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Sample records for brazil genotype distribution

  1. Geographic distribution of hepatitis C virus genotypes in Brazil

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    Campiotto S.

    2005-01-01

    Full Text Available Brazil is a country of continental dimension with a population of different ethnic backgrounds. Thus, a wide variation in the frequencies of hepatitis C virus (HCV genotypes is expected to occur. To address this point, 1,688 sequential samples from chronic HCV patients were analyzed. HCV-RNA was amplified by the RT-PCR from blood samples collected from 1995 to 2000 at different laboratories located in different cities from all Brazilian States. Samples were collected in tubes containing a gel separator, centrifuged in the site of collection and sent by express mail in a refrigerated container to Laboratório Bioquímico Jardim Paulista, São Paulo, SP, Brazil. HCV- RNA was extracted from serum and submitted to RT and nested PCR using standard procedures. Nested PCR products were submitted to cycle sequencing reactions without prior purification. Sequences were analyzed for genotype determination and the following frequencies were found: 64.9% (1,095 for genotype 1, 4.6% (78 for genotype 2, 30.2% (510 for genotype 3, 0.2% (3 for genotype 4, and 0.1% (2 for genotype 5. The frequencies of HCV genotypes were statistically different among Brazilian regions (P = 0.00017. In all regions, genotype 1 was the most frequent (51.7 to 74.1%, reaching the highest value in the North; genotype 2 was more prevalent in the Center-West region (11.4%, especially in Mato Grosso State (25.8%, while genotype 3 was more common in the South (43.2%. Genotypes 4 and 5 were rarely found and only in the Southeast, in São Paulo State. The present data indicate the need for careful epidemiological surveys throughout Brazil since knowing the frequency and distribution of the genotypes would provide key information for understanding the spread of HCV.

  2. Hepatitis B virus genotypes circulating in Brazil: molecular characterization of genotype F isolates

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    Virgolino Helaine A

    2007-11-01

    Full Text Available Abstract Background Hepatitis B virus (HBV isolates have been classified in eight genotypes, A to H, which exhibit distinct geographical distributions. Genotypes A, D and F are predominant in Brazil, a country formed by a miscegenated population, where the proportion of individuals from Caucasian, Amerindian and African origins varies by region. Genotype F, which is the most divergent, is considered indigenous to the Americas. A systematic molecular characterization of HBV isolates from different parts of the world would be invaluable in establishing HBV evolutionary origins and dispersion patterns. A large-scale study is needed to map the region-by-region distribution of the HBV genotypes in Brazil. Results Genotyping by PCR-RFLP of 303 HBV isolates from HBsAg-positive blood donors showed that at least two of the three genotypes, A, D, and F, co-circulate in each of the five geographic regions of Brazil. No other genotypes were identified. Overall, genotype A was most prevalent (48.5%, and most of these isolates were classified as subgenotype A1 (138/153; 90.2%. Genotype D was the most common genotype in the South (84.2% and Central (47.6% regions. The prevalence of genotype F was low (13% countrywide. Nucleotide sequencing of the S gene and a phylogenetic analysis of 32 HBV genotype F isolates showed that a great majority (28/32; 87.5% belonged to subgenotype F2, cluster II. The deduced serotype of 31 of 32 F isolates was adw4. The remaining isolate showed a leucine-to-isoleucine substitution at position 127. Conclusion The presence of genotypes A, D and F, and the absence of other genotypes in a large cohort of HBV infected individuals may reflect the ethnic origins of the Brazilian population. The high prevalence of isolates from subgenotype A1 (of African origin indicates that the African influx during the colonial slavery period had a major impact on the circulation of HBV genotype A currently found in Brazil. Although most genotype F

  3. Biotyping and genotyping (MLVA16 of Brucella abortus isolated from cattle in Brazil, 1977 to 2008.

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    Sílvia Minharro

    Full Text Available Brucellosis is a worldwide distributed zoonosis that causes important economic losses to animal production. In Brazil, information on the distribution of biovars and genotypes of Brucella spp. is scarce or unavailable. This study aimed (i to biotype and genotype 137 Brazilian cattle isolates (from 1977 to 2008 of B. abortus and (ii to analyze their distribution. B. abortus biovars 1, 2 and 3 (subgroup 3b were confirmed and biovars 4 and 6 were first described in Brazil. Genotyping by the panel 1 revealed two groups, one clustering around genotype 40 and another around genotype 28. Panels 2A and 2B disclosed a high diversity among Brazilian B. abortus strains. Eighty-nine genotypes were found by MLVA16. MLVA16 panel 1 and 2 showed geographic clustering of some genotypes. Biotyping and MLVA16 genotyping of Brazilian B. abortus isolates were useful to better understand the epidemiology of bovine brucellosis in the region.

  4. Genotype and mating type distribution within clinical Cryptococcus neoformans and Cryptococcus gattii isolates from patients with cryptococcal meningitis in Uberaba, Minas Gerais, Brazil.

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    Mora, Delio José; Pedrosa, André Luiz; Rodrigues, Virmondes; Leite Maffei, Claudia Maria; Trilles, Luciana; Dos Santos Lazéra, Márcia; Silva-Vergara, Mario León

    2010-06-01

    We molecularly characterized 81 cryptococcal isolates recovered from cerebrospinal fluid samples of 77 patients diagnosed between 1998 and 2007 as having cryptococcal meningitis in Uberaba Minas Gerais, Brazil. Fifty-seven (74%) were male with a mean age 35.6 years. Seventy-two (88.9%) of the isolates were from 68 AIDS patients and cryp-tococcosis was the first AIDS-defining condition in 38 (55.9%) patients. Cryptococcosis and AIDS were simultaneously diagnosed in 25 (65.8%) of these 38 patients. Genotypes were characterized through the use of URA5 restriction fragment length polymorphisms analysis, the genetic variability was determined using PCR-fingerprinting with the minisatellite-specific primer M13, and the mating type and serotypes were established by PCR. Seventy-six of the 81 isolates were Cryptococcus neoformans (93.8%), while the remaining five were C. gattii (6.1%), but all were mating type alpha. C. neoformans isolates were genotype VNI (serotype A), while C. gattii isolates were VGII. Four of the latter isolates were identical, but only two were from AIDS patients. Six of the nine isolates from non-AIDS patients were VNI. PCR fingerprints of the isolates from two of the three AIDS patients with clinical relapse were 100% identical. The predominance of VNI and mating type alpha is in accordance with data from other parts of the world. The occurrence of VGII in Minas Gerais indicates a geographical expansion within Brazil.

  5. Hepatitis B virus genotypes and resistance mutations in patients under long term lamivudine therapy: characterization of genotype G in Brazil

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    Brandão Carlos E

    2008-01-01

    Full Text Available Abstract Background Lamivudine is an oral nucleoside analogue widely used for the treatment of chronic hepatitis B. The main limitation of lamivudine use is the selection of resistant mutations that increases with time of utilization. Hepatitis B virus (HBV isolates have been classified into eight genotypes (A to H with distinct geographical distributions. HBV genotypes may also influence pathogenic properties and therapeutic features. Here, we analyzed the HBV genotype distribution and the nature and frequency of lamivudine resistant mutations among 36 patients submitted to lamivudine treatment for 12 to 84 months. Results Half of the patients were homosexual men. Only 4/36 (11% patients were HBV DNA negative. As expected for a Brazilian group, genotypes A (24/32 positive individuals, 75%, D (3/32, 9.3% and F (1/32, 3% were present. One sample was from genotype C, which is a genotype rarely found in Brazil. Three samples were from genotype G, which had not been previously detected in Brazil. Lamivudine resistance mutations were identified in 20/32 (62% HBV DNA positive samples. Mean HBV loads of patients with and without lamivudine resistance mutations were not very different (2.7 × 107 and 6.9 × 107 copies/mL, respectively. Fifteen patients showed the L180M/M204V lamivudine resistant double mutation. The triple mutant rt173V/180M/204V, which acts as a vaccine escape mutant, was found in two individuals. The three isolates of genotype G were entirely sequenced. All three showed the double mutation L180M/M204V and displayed a large genetic divergence when compared with other full-length genotype G isolates. Conclusion A high (55% proportion of patients submitted to long term lamivudine therapy displayed resistant mutations, with elevated viral load. The potential of transmission of such HBV mutants should be monitored. The identification of genotypes C and G, rarely detected in South America, seems to indicate a genotype distribution different

  6. Asian genotypes of dengue virus 4 in Brazil.

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    Pinho, A C O; Sardi, S I; Paula, F L; Peixoto, I B; Brandão, C J; Fernandez, F M C; Campos, G S

    2015-10-01

    Dengue virus, commonly transmitted by mosquitoes, causes a human disease of significant social impact and presents a serious public health problem in Brazil. This report describes the unusual emergence of DENV-4 in northern Brazil after a nearly 30-year-long absence. DENV-4 genotype I is of Asian origin and was identified in the serum of patients receiving treatment at a hospital serving the Salvador area (Brazilian state of Bahia). The identification of dengue virus serotypes through molecular and phylogenetic analysis is essential for predicting disease severity or fatal illness, principally in endemic countries such as Brazil.

  7. Human platelet antigen genotyping of platelet donors in southern Brazil.

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    Merzoni, J; Fagundes, I S; Lunardi, L W; Lindenau, J D-R; Gil, B C; Jobim, M; Dias, V G; Merzoni, L; Sekine, L; Onsten, T G H; Jobim, L F

    2015-10-01

    Human platelet antigens (HPA) are immunogenic structures that result from single nucleotide polymorphisms (SNPs) leading to single amino acid substitutions. This study sought to determine the allele and genotype frequencies of HPA-1, HPA-2, HPA-3, HPA-4, HPA-5 and HPA-15 in platelet donors from the state of Rio Grande do Sul (RS), Brazil, and compare their allele frequencies to those observed in other populations. HPA genotyping was performed by PCR-SSP method. The study sample comprised 201 platelet donors (167 Caucasians and 34 non-Caucasians). Allele 'a' was that most commonly found for HPA-1 to 5 in both groups. The HPA-15ab genotype predominated over homozygous genotypes of this system. Fisher's exact test revealed statistically significant differences for the HPA-5 system, with a greater prevalence of the HPA-5b allele in non-Caucasians. The neighbour-joining method and principal components analysis revealed genetic proximity between our Caucasian group and European populations. We conclude that the allele frequencies of HPA-1 to 5 and HPA-15 found in our Caucasian sample are similar to those reported for European populations. These findings corroborate the ethnic makeup of the population of RS. The higher frequency of the HPA-5b allele found in the non-Caucasian group of our sample suggests the possibility of allosensitization in patients who receive platelet transfusions from genetically incompatible donors.

  8. HIV and HCV coinfection: prevalence, associated factors and genotype characterization in the Midwest Region of Brazil.

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    Freitas, Solange Zacalusni; Teles, Sheila Araújo; Lorenzo, Paulo Cesar; Puga, Marco Antonio Moreira; Tanaka, Tayana Serpa Ortiz; Thomaz, Danilo Yamamoto; Martins, Regina Maria Bringel; Druzian, Angelita Fernandes; Lindenberg, Andréa Siqueira Campos; Torres, Marina Sawada; Pereira, Sérgio A; Villar, Livia Melo; Lampe, Elisabete; Motta-Castro, Ana Rita Coimbra

    2014-01-01

    A cross-sectional study on prevalence, associated factors and genotype distribution of HCV infection was conducted among 848 HIV-infected patients recruited at reference centers in the Midwest Region of Brazil. The prevalence rate of HIV-HCV coinfection was 6.9% (95% CI: 5.2 to 8.6). In multivariable analysis, increasing age, use of illicit drugs (injection and non-injection), a history of blood transfusion before 1994, and the absence of a steady partnership were significant independent associated factors for HIV-HCV coinfection. The phylogenetic analysis based on the NS5B region revealed the presence of two major circulating genotypes of HCV: genotypes 1 (58.3%) and 3 (41.7%). The prevalence of HIV-HCV coinfection was lower than those reported in studies conducted with HIV-infected patients in different regions of Brazil, due to the fact that illicit drug use is not a frequent mode of HIV transmission in this region of Brazil. Serologic screening of HIV-patients for HCV before initiating antiretroviral treatment, a comprehensive identification of associated factors, and the implementation of effective harm reduction programs are highly recommended to provide useful information for treatment and to prevent HCV coinfection in these patients.

  9. HIV AND HCV COINFECTION: PREVALENCE, ASSOCIATED FACTORS AND GENOTYPE CHARACTERIZATION IN THE MIDWEST REGION OF BRAZIL

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    Solange Zacalusni Freitas

    2014-12-01

    Full Text Available A cross-sectional study on prevalence, associated factors and genotype distribution of HCV infection was conducted among 848 HIV-infected patients recruited at reference centers in the Midwest Region of Brazil. The prevalence rate of HIV-HCV coinfection was 6.9% (95% CI: 5.2 to 8.6. In multivariable analysis, increasing age, use of illicit drugs (injection and non-injection, a history of blood transfusion before 1994, and the absence of a steady partnership were significant independent associated factors for HIV-HCV coinfection. The phylogenetic analysis based on the NS5B region revealed the presence of two major circulating genotypes of HCV: genotypes 1 (58.3% and 3 (41.7%. The prevalence of HIV-HCV coinfection was lower than those reported in studies conducted with HIV-infected patients in different regions of Brazil, due to the fact that illicit drug use is not a frequent mode of HIV transmission in this region of Brazil. Serologic screening of HIV-patients for HCV before initiating antiretroviral treatment, a comprehensive identification of associated factors, and the implementation of effective harm reduction programs are highly recommended to provide useful information for treatment and to prevent HCV coinfection in these patients.

  10. Identification of Cryptosporidiumspecies and genotypes in dairy cattle in Brazil

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    Flavio Medeiros Paz e Silva

    Full Text Available In this study, we identified Cryptosporidium species and genotypes present in dairy cattle in the central region of São Paulo state, Brazil. Fecal specimens were collected from 200 animals (100 calves and 100 cows in ten dairy farms. Fecal samples were examined using microscopic examination (ME, enzyme immunoassay (EIA and polymerase chain reaction (PCR. Cryptosporidiumspecies and genotypes were determined by restriction fragment length polymorphism (RFLP or DNA sequencing analysis of the SSU-rRNA and GP60 genes. The occurrence of Cryptosporidium spp. infection was 14% (28/200. The occurrence in calves (26% was significantly higher than in cows (2%. Of the 27 Cryptosporidium-positive specimens submitted to genotyping, C. andersoni was identified in 23 (85.1%, C. bovis in three (11.1%, and the zoonotic C. parvum subtype IIaA15G2R1 in one (3.7%. The study demonstrates thatCryptosporidium spp. infection was common and widespread in dairy cattle in this region and that calves have a high prevalence of C. andersoni. Furthermore, the presence of C. parvumsubtype IIaA15G2R1 indicates that dairy calves from this region should be considered a potential source of zoonotic Cryptosporidiumoocysts.

  11. Hepatitis B virus genotypes from European origin explains the high endemicity found in some areas from southern Brazil.

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    Bertolini, Dennis Armando; Gomes-Gouvêa, Michele Soares; Guedes de Carvalho-Mello, Isabel Maria Vicente; Carvalho-Mello, Isabel Maria Vicente Guedes de; Saraceni, Cláudia Patara; Sitnik, Roberta; Grazziotin, Felipe Gobbi; Laurino, Jomar Pereira; Laurindo, Jomar Pereira; Fagundes, Nelson Jurandi Rosa; Carrilho, Flair José; Pinho, João Renato Rebello

    2012-08-01

    Southern Brazil is considered an area of low Hepatitis B endemicity, but some areas of higher endemicity have been described in the Southwest of Paraná and Santa Catarina states. The aim of this study was to evaluate viral genotypes circulating throughout Paraná state. PCR amplification and partial sequencing of the S gene was carried out in 228 samples from HBsAg positive candidate blood donors. Samples have been collected in seven different counties (Cascavel, Curitiba, Foz do Iguaçu, Francisco Beltrão, Maringá, Londrina and Paranaguá). The most common HBV genotype in Paraná state was D (82.9%; 189/228), followed by A (14.1%; 32/228). Genotypes F (1.3%; 3/228), C (1.3%; 3/228) and H (0.4%; 1/228) were also found. Distribution of genotypes was different in the studied counties, but genotype D was the most frequent in all of them. In Francisco Beltrão, all studied samples belonged to genotype D. The high prevalence of HBV genotype D in South of Brazil is explained by the intense migration of settlers from Europeans countries. Subgenotypes A1 and A2 were identified circulating in all cities where HBV/A was found. As observed in other areas of Brazil, HBV/A1 is more frequent than the HBV/A2 in Paraná state and its presence was significantly larger in black and mulatto individuals. Genotype C was found only in individuals with Asian ancestry from Londrina and Maringá. Most HBV/F sequences identified in this study were classified as subgenotype F2a that was previously described in Brazil. The sole case of subgenotype F4 was from Foz do Iguaçu city, near to Northern Argentina, where F4 is highly prevalent. The single genotype H sample was from Curitiba. This is the first case of this genotype described in Brazil. Further studies should be carried out to determine if more genotype H samples can be found in other populations from Brazil.

  12. Hepatitis B virus infection profile in hemodialysis patients in Central Brazil: prevalence, risk factors, and genotypes

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    Renata C Ferreira

    2006-09-01

    Full Text Available Hemodialysis patients are at high risk for hepatitis B virus (HBV infection. A survey was conducted in the hemodialysis population of the state of Goiás, Central Brazil, aiming to assess the prevalence of HBV infection, to analyse associated risk factors, and also to investigate HBV genotypes distribution. A total of 1095 patients were interviewed in 15 dialysis units. Serum samples were screened for HBV serological markers by enzyme-linked immunosorbent assay. Hepatitis B surface antigen (HBsAg positive samples were tested for HBV DNA by polymerase chain reaction and genotyped by restriction fragment length polymorphism. Global HBV infection prevalence was 29.8% (95% CI: 27.1-32.5. Multivariate analysis of risk factors showed that male gender, length of time on hemodialysis, and blood transfusion before 1993 were associated with HBV positivity. HBV DNA was detected in 65.4% (17/26 of the HBsAg-positive samples. Thirteen of 17 HBV DNA positive samples were genotyped. Genotype D (61.5% was predominant, followed by A (30.8%, while genotype F was detected in only one (7.7% sample.

  13. Genotypic characterization of psittacid herpesvirus isolates from Brazil

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    Luppi, Marcela Miranda; Luiz, Ana Paula Moreira Franco; Coelho, Fabiana Magalhães; Ecco, Roselene; da Fonseca, Flávio Guimarães; Resende, Mauricio

    2016-01-01

    Thirty-six isolates of psittacid herpesvirus (PsHV), obtained from 12 different species of psittacids in Brazil, were genotypically characterized by restriction fragment length polymorphism (RFLP) analysis and PCR amplification. RFLP analysis with the PstI enzyme revealed four distinct restriction patterns (A1, X, W and Y), of which only A1 (corresponding to PsHV-1) had previously been described. To study PCR amplification patterns, six pairs of primers were used. Using this method, six variants were identified, of which, variants 10, 8, and 9 (in this order) were most prevalent, followed by variants 1, 4, and 5. It was not possible to correlate the PCR and RFLP patterns. Twenty-nine of the 36 isolates were shown to contain a 419 bp fragment of the UL16 gene, displaying high similarity to the PsHV-1 sequences available in GenBank. Comparison of the results with the literature data suggests that the 36 Brazilian isolates from this study belong to genotype 1 and serotype 1. PMID:26887248

  14. An autochthonous case of hepatitis C virus genotype 5a in Brazil: phylogenetic analysis

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    Ribeiro, L.C.; Souto, F.J.D.; do Espirito-Santo, M.P.;

    2009-01-01

    Genotype 5 of hepatitis C virus (HCV) has been rarely identified in South America. A female of African descent who never left Brazil was found to be infected by this genotype in Mato Grosso state, Central Brazil. The patient denied drug injections and revealed that she had received blood...... transfusions several years before. One of her blood donors was identified and tested negative for anti-HCV and HCV RNA, as were her husband and offspring. Phylogenetic analysis of the E1 and NS5B regions confirmed that this HCV strain belonged to genotype 5a. However, the E1 region analysis indicates that our...... strain is not closely related to any sequences of genotype 5a from other geographical areas, diverging from the African and European subclades known so far. These data suggest that genotype 5a HCV might have been circulating at a low level in Brazil longer than previously supposed....

  15. RAPD identification of Varroa destructor genotypes in Brazil and other regions of the Americas.

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    Guerra, J C V; Issa, M R C; Carneiro, F E; Strapazzon, R; Moretto, G

    2010-01-01

    The mite Varroa destructor is the main pest causing damage to apiculture worldwide. In Brazil and other parts of the world, where bees of African origin and their hybrids predominate, the bees can survive these mites without treatment. Studies have shown a correlation between the various genotypes of the mite and its fertility in different geographical regions. Information about mite genotype could be helpful in understanding the diverse effects and relationships of the mite with bees in different regions of the world. DNA analysis by RAPD technique has permitted identification of three distinct genotypes in the mite V. destructor, namely Russian, Japanese and Papua New Guinea. We found predominance of the Russian genotype in Brazil, along with other parts of South America, and in Cuba and Mexico. The Japanese genotype was exclusively found on Fernando de Noronha Island in Brazil.

  16. Hepatitis B virus genotypes and mutations in the basal core promoter and pre-core/core in chronically infected patients in southern Brazil: a cross-sectional study of HBV genotypes and mutations in chronic carriers

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    Flávia Miryan Martins Almeida de Mello

    2014-12-01

    Full Text Available Introduction In Brazil, little data exist regarding the distribution of genotypes in relation to basal core promoter (BCP and precore/core mutations among chronic hepatitis B virus (HBV carriers from different regions of the country. The aim of this study was to identify HBV genotypes and the frequency of mutations at the BCP and precore/core region among the prevalent genotypes in chronic carriers from southern Brazil. Methods Nested-polymerase chain reaction (nested-PCR products amplified from the S-polymerase gene, BCP and precore/core region from 54 samples were sequenced and analyzed. Results Phylogenetic analysis of the S-polymerase gene sequences showed that 66.7% (36/54 of the patients were infected with genotype D (D1, D2, D3, 25.9% (14/54 with genotype A (A1, A2, 5.6% (3/54 with subgenotype C2, and 2% (1/54 with genotype E. A comparison of virological characteristics showed significant differences between genotypes A, C and D. The comparison between HBeAg status and the G1896A stop codon mutation in patients with genotype D revealed a relationship between HBV G1896A precore mutants and genotype D and hepatitis B e antigen (HBeAg seroconversion. Genotype D had a higher prevalence of the G1896A mutation and the presence of a thymine at position 1858. Genotype A was associated with a higher prevalence of the G1862T mutation and the presence of a cytosine at position 1858. Conclusions HBV genotype D (D3 is predominant in HBV chronic carriers from southern Brazil. The presence of mutations in the BCP and precore/core region was correlated with the HBV genotype and HBeAg negative status.

  17. Prevalence of hepatitis C virus (HCV infection and HCV genotypes of hemodialysis patients in Salvador, Northeastern Brazil

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    Silva L.K.

    2006-01-01

    Full Text Available Hepatitis C virus (HCV infection has been identified as the major cause of chronic liver disease among patients on chronic hemodialysis (HD, despite the important reduction in risks obtained by testing candidate blood donors for anti-HCV antibodies and the use of recombinant erythropoietin to treat anemia. A cross-sectional study was performed to estimate the prevalence of HCV infection and genotypes among HD patients in Salvador, Northeastern Brazil. Anti-HCV seroprevalence was determined by ELISA in 1243 HD patients from all ten different dialysis centers of the city. HCV infection was confirmed by RT-PCR and genotyping was performed by restriction fragment length polymorphism. Anti-HCV seroprevalence among HD patients was 10.5% (95% CI: 8.8-12.3 (Murex anti-HCV, Abbott Murex, Chicago, IL, USA. Blood samples for qualitative HCV detection and genotyping were collected from 125/130 seropositive HD patients (96.2%. HCV-RNA was detected in 92/125 (73.6% of the anti-HCV-positive patients. HCV genotype 1 (77.9% was the most prevalent, followed by genotype 3 (10.5% and genotype 2 (4.6%. Mixed infections of genotypes 1 and 3 were found in 7.0% of the total number of patients. The present results indicate a significant decrease in anti-HCV prevalence from 23.8% detected in a study carried out in 1994 to 10.5% in the present study. The HCV genotype distribution was closely similar to that observed in other hemodialysis populations in Brazil, in local candidate blood donors and in other groups at risk of transfusion-transmitted infection.

  18. Global distribution of novel rhinovirus genotype

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    Briese, Thomas; Renwick, Neil; Venter, Marietjie;

    2008-01-01

    Global surveillance for a novel rhinovirus genotype indicated its association with community outbreaks and pediatric respiratory disease in Africa, Asia, Australia, Europe, and North America. Molecular dating indicates that these viruses have been circulating for at least 250 years Udgivelsesdato...

  19. Global distribution of novel rhinovirus genotype

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    Briese, Thomas; Renwick, Neil; Venter, Marietjie;

    2008-01-01

    Global surveillance for a novel rhinovirus genotype indicated its association with community outbreaks and pediatric respiratory disease in Africa, Asia, Australia, Europe, and North America. Molecular dating indicates that these viruses have been circulating for at least 250 years....

  20. Distribution of HCV genotypes in the metropolitan area of Naples

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    Giuseppe Sodano

    2013-08-01

    Full Text Available The Hepatitis C virus is characterized by high genomic variability that leads to the identification of six different genotypes and many subtypes. In this work, we show the prevalence of genotypes in patients living in the metropolitan area of Naples collected in one year, analyzing differences in the distribution depending on sex and age groups.

  1. Isolation and genotyping of free-living environmental isolates of Acanthamoeba spp. from bromeliads in Southern Brazil.

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    Landell, Melissa Fontes; Salton, Juliana; Caumo, Karin; Broetto, Leonardo; Rott, Marilise B

    2013-07-01

    Species of Acanthamoeba are frequently isolated from distinct environmental sources such as water, soil, dust and air. They are responsible to cause infections and disease in humans and animals. In addition, Acanthamoeba sp. are considered an important reservoir of bacteria, virus and fungi, which act as "Trojan horses" to protect these microorganisms of harsh environmental conditions. In this study, nine Acanthamoeba isolates from bromeliads phylloplane were identified based on the morphology of cyst and trophozoite forms. The genotype level was accessed by the sequence analysis of Acanthamoeba small-subunit rRNA gene. Genotypic characterization grouped five isolates in the genotype T2/T6, three in the T4 genotype and one in the genotype T16. The results obtained indicate that the genotype T2/T6 is common on phylloplane. To predict the pathogenic potential of the Acanthamoeba isolates, thermo and osmotolerance assays were employed, although all isolates were capable of surviving at temperatures of 37°C, other tests will be conducted in the future to determine the potential pathogenic of the isolates. Altogether, our results revealed the importance of the presence of Acanthamoeba associated with bromeliads in Rio Grande do Sul, Brazil, and the necessity for further studies to determine the environmental distribution and the role of these species.

  2. Multiattribute Response of Maize Genotypes Tested in Different Coastal Regions of Brazil

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    Lúcio Borges de Araújo

    2011-01-01

    Full Text Available This work applies the three mode principal components analysis to analyze simultaneously the multiple attributes; to fit of models with additive main effects and multiplicative interaction effects (AMMI models and the regressions models on sites (SREG models; to evaluate, respectively, the multivariate response of the genotype × environment interaction and the mean response of 36 genotypes of corn tested in 4 locations in Brazil. The results were presented by joint plots to identify the best genotypes for their adaptability and performance in the set of attributes.

  3. Movement of genotypes of Ceratocystis fimbriata within and among Eucalyptus plantations in Brazil.

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    Ferreira, Maria A; Harrington, Thomas C; Alfenas, Acelino C; Mizubuti, Eduardo S G

    2011-08-01

    Ceratocystis wilt on eucalyptus, caused by Ceratocystis fimbriata, was first recognized in 1997 in the state of Bahia, Brazil, but is now known in five other states and in four other countries. C. fimbriata is a native, soilborne pathogen in some parts of Brazil but we hypothesized that genotypes of the pathogen have been moved among plantations in rooted cuttings collected from diseased trees and within plantations on cutting tools. We used six microsatellite markers to identify 78 genotypes of C. fimbriata among 177 isolates from individual trees in 20 eucalyptus plantations. The highest gene and genotypic diversity values were found in plantations on formerly wild Cerrado forest in Minas Gerais, suggesting that the fungus was in the soil prior to planting eucalyptus. In contrast, one or only a few genotypes were found in plantations on previous pastureland (with no woody hosts) in Bahia and São Paulo, and most of these genotypes were found in a Bahian nursery or in one of two Bahian plantations that were sources for rooted cuttings. Sources of cuttings tended to be dominated by one or a few genotypes that may have been spread within the plantation on cutting tools.

  4. Evidence for the co-circulation of dengue virus type 3 genotypes III and V in the Northern region of Brazil during the 2002-2004 epidemics

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    Meri Bordignon Nogueira; Vanessa Stella; Juliano Bordignon; Weber Cheli Batista; Luana de Borba; Luis Hildebrando Pereira da Silva; Federico Guillermo Hoffmann; Christian Macagnan Probst; Claudia Nunes Duarte dos Santos

    2008-01-01

    The reintroduction of dengue virus type 3 (DENV-3) in Brazil in 2000 and its subsequent spread throughout the country was associated with genotype III viruses, the only DENV-3 genotype isolated in Brazil prior to 2002. We report here the co-circulation of two different DENV-3 genotypes in patients living in the Northern region of Brazil during the 2002-2004 epidemics. Complete genomic sequences of viral RNA were determined from these epidemics, and viruses belonging to genotypes V (Southeast ...

  5. Hepatitis B Virus Genotype D Isolates Circulating in Chapecó, Southern Brazil, Originate from Italy

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    Gusatti, Carolina Souza; Costi, Cintia; Halon, Maria Laura; Grandi, Tarciana; Medeiros, Arlete Ferrari Rech; Silva, Cláudia Maria Dornelles; Gomes, Selma Andrade; Silva, Marcia Susana Nunes; Niel, Christian; Rossetti, Maria Lucia Rosa

    2015-01-01

    Hepatitis B virus genotype A1 (HBV/A1), of African origin, is the most prevalent genotype in Brazil, while HBV/F predominates in the other South American countries. However, HBV/D is the most common in the three states of southern Brazil, where ‘islands’ of elevated prevalence, as Chapecó and other cities, have been described. In this study, 202 HBV chronic carriers attending in 2013 the viral hepatitis ambulatory of Chapecó, were investigated. In comparison with previous studies performed in the same ambulatory, a rapid aging of the HBV infected population was observed (mean age of the newly diagnosed patients increasing from 29.9 ± 10.3 years in 1996 to 44.4 ± 13.3 years in 2013), probably due to a singular vaccination schedule at Chapecó that included not only children but also adolescents. Phylogenetic and BLAST analyses (S region) classified 91 HBV isolates into genotypes A (n = 3) and D (n = 88). The majority of HBV/D isolates were closely related to D3 sequences. To understand the reasons for the absence or near absence of genotypes A and F, and how HBV/D was introduced in the south of Brazil, HBV/D infected patients were inquired about their genealogical and geographical origins. Forty-three (52%) patients have their four grandparents of Italian origin, vs. seven (8%) who have their four grandparents of Brazilian origin. At all, 65 out of 83 (78%) patients had at least one grandparent originating from Italy. Taking into consideration the fact that Italy is one of the few countries where subgenotype D3 is predominant, the results strongly suggested that HBV/D was introduced in Brazil through Italian immigration which culminated between 1870 and 1920. PMID:26275046

  6. Hepatitis B Virus Genotype D Isolates Circulating in Chapeco, Southern Brazil, Originate from Italy.

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    Carolina Souza Gusatti

    Full Text Available Hepatitis B virus genotype A1 (HBV/A1, of African origin, is the most prevalent genotype in Brazil, while HBV/F predominates in the other South American countries. However, HBV/D is the most common in the three states of southern Brazil, where 'islands' of elevated prevalence, as Chapecó and other cities, have been described. In this study, 202 HBV chronic carriers attending in 2013 the viral hepatitis ambulatory of Chapecó, were investigated. In comparison with previous studies performed in the same ambulatory, a rapid aging of the HBV infected population was observed (mean age of the newly diagnosed patients increasing from 29.9 ± 10.3 years in 1996 to 44.4 ± 13.3 years in 2013, probably due to a singular vaccination schedule at Chapecó that included not only children but also adolescents. Phylogenetic and BLAST analyses (S region classified 91 HBV isolates into genotypes A (n = 3 and D (n = 88. The majority of HBV/D isolates were closely related to D3 sequences. To understand the reasons for the absence or near absence of genotypes A and F, and how HBV/D was introduced in the south of Brazil, HBV/D infected patients were inquired about their genealogical and geographical origins. Forty-three (52% patients have their four grandparents of Italian origin, vs. seven (8% who have their four grandparents of Brazilian origin. At all, 65 out of 83 (78% patients had at least one grandparent originating from Italy. Taking into consideration the fact that Italy is one of the few countries where subgenotype D3 is predominant, the results strongly suggested that HBV/D was introduced in Brazil through Italian immigration which culminated between 1870 and 1920.

  7. Hepatitis B Virus Genotype D Isolates Circulating in Chapecó, Southern Brazil, Originate from Italy.

    Science.gov (United States)

    Gusatti, Carolina Souza; Costi, Cintia; Halon, Maria Laura; Grandi, Tarciana; Medeiros, Arlete Ferrari Rech; Silva, Cláudia Maria Dornelles; Gomes, Selma Andrade; Silva, Marcia Susana Nunes; Niel, Christian; Rossetti, Maria Lucia Rosa

    2015-01-01

    Hepatitis B virus genotype A1 (HBV/A1), of African origin, is the most prevalent genotype in Brazil, while HBV/F predominates in the other South American countries. However, HBV/D is the most common in the three states of southern Brazil, where 'islands' of elevated prevalence, as Chapecó and other cities, have been described. In this study, 202 HBV chronic carriers attending in 2013 the viral hepatitis ambulatory of Chapecó, were investigated. In comparison with previous studies performed in the same ambulatory, a rapid aging of the HBV infected population was observed (mean age of the newly diagnosed patients increasing from 29.9 ± 10.3 years in 1996 to 44.4 ± 13.3 years in 2013), probably due to a singular vaccination schedule at Chapecó that included not only children but also adolescents. Phylogenetic and BLAST analyses (S region) classified 91 HBV isolates into genotypes A (n = 3) and D (n = 88). The majority of HBV/D isolates were closely related to D3 sequences. To understand the reasons for the absence or near absence of genotypes A and F, and how HBV/D was introduced in the south of Brazil, HBV/D infected patients were inquired about their genealogical and geographical origins. Forty-three (52%) patients have their four grandparents of Italian origin, vs. seven (8%) who have their four grandparents of Brazilian origin. At all, 65 out of 83 (78%) patients had at least one grandparent originating from Italy. Taking into consideration the fact that Italy is one of the few countries where subgenotype D3 is predominant, the results strongly suggested that HBV/D was introduced in Brazil through Italian immigration which culminated between 1870 and 1920.

  8. New genotype of dengue type 3 virus circulating in Brazil and Colombia showed a close relationship to old Asian viruses.

    Science.gov (United States)

    Aquino, Victor Hugo; Amarilla, Alberto Anastacio; Alfonso, Helda Liz; Batista, Weber Cheli; Figueiredo, Luiz Tadeu Moraes

    2009-10-13

    Dengue type 3 genotype V viruses have been recently detected in Brazil and Colombia. In this study, we described another Brazilian isolate belonging to this genotype. Phylogenetic analysis including dengue type 3 viruses isolated worldwide showed that Brazilian and Colombian viruses were closely related to viruses isolated in Asia more than two decades ago. The characteristic evolutionary pattern of dengue type 3 virus cannot explain the close similarity of new circulating viruses with old viruses. Further studies are needed to confirm the origin of the new dengue type III genotype circulating in Brazil and Colombia.

  9. New genotype of dengue type 3 virus circulating in Brazil and Colombia showed a close relationship to old Asian viruses.

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    Victor Hugo Aquino

    Full Text Available Dengue type 3 genotype V viruses have been recently detected in Brazil and Colombia. In this study, we described another Brazilian isolate belonging to this genotype. Phylogenetic analysis including dengue type 3 viruses isolated worldwide showed that Brazilian and Colombian viruses were closely related to viruses isolated in Asia more than two decades ago. The characteristic evolutionary pattern of dengue type 3 virus cannot explain the close similarity of new circulating viruses with old viruses. Further studies are needed to confirm the origin of the new dengue type III genotype circulating in Brazil and Colombia.

  10. The circulation of human astrovirus genotypes in the Central West Region of Brazil

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    Paula Andreia Silva

    2009-07-01

    Full Text Available Out of 1,588 faecal samples of children taken from three locations of the Central West Region of Brazil, 57 were positive for astroviruses (HAstVs using reverse transcription-polymerase chain reaction (RT-PCR. They were genotyped by nested RT-PCR and/or genomic sequencing. HAstV-1 (42.8%, HAstV-2 (23.2%, HAstV-3 (3.6%, HAstV-4 (14.3% and HAstVs -5, -6, -7 and -8 (1.8% each were detected. In Goiânia and Campo Grande, HAstV-1 was the most frequently detected genotype while in Brasília (DF it was HAstV-2. Shifts in the circulation of astrovirus genotypes were observed in DF and Campo Grande. All samples collected by rectal swabs were viral negative. The astrovirus genotypes were detected in all age groups and there was no correlation between genotype and age group.

  11. HPV genotyping and p16 expression in Xingu Indigenous Park, Brazil.

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    Freitas, V G; Focchi, G R; Pereira, E R; Levi, J E; Speck, N M G; Ribalta, J C

    2016-09-16

    The association between high-risk human papillomavirus (HPV) genotypes and p16 expression in indigenous women from the Xingu Indigenous Park, Brazil, was unknown. This study evaluated p16 expression in women with a histological diagnosis of cervical intraepithelial neoplasia (CIN) 3 or higher and correlated this expression with HPV genotypes to determine possible discrepancies in the expression of this marker. We evaluated 37 previously collected samples with different HPV genotypes and high-grade lesions diagnosed based on cytology, histology, and colposcopy. Immunohistochemical analysis was performed using paraffin-embedded tissue sections and the CINtec® Histology Kit. p16 protein expression was investigated by immunostaining with an anti-p16 antibody. HPV genotyping was performed by reverse hybridization. The age of the study population ranged from 22-75 years (43.81 ± 15.89 years) and parity ranged from 1-11 (5.92 ± 2.58). Thirteen different HPV genotypes were found using the INNO-LiPA kit. Single and multiple infections by HPV were found with prevalence of single infections (P = 0.029). Comparison between HPV genotype and simple or multiple infections was highly significant; it was observed more HPV 52 followed by HPV 16 in single infections (P p16 expression was predominantly diffuse, which was observed in 91.7% of lesions, whereas 8.3% were focal (P p16 expression in high-grade CIN was not influenced by the viral genotype; however, more studies are necessary to further our understanding of this restricted group.

  12. Genotyping of canine distemper virus strains circulating in Brazil from 2008 to 2012.

    Science.gov (United States)

    Budaszewski, Renata da Fontoura; Pinto, Luciane Dubina; Weber, Matheus Nunes; Caldart, Eloiza Teles; Alves, Christian Diniz Beduschi Travassos; Martella, Vito; Ikuta, Nilo; Lunge, Vagner Ricardo; Canal, Cláudio Wageck

    2014-02-13

    Canine distemper virus (CDV) is a major pathogen of dogs and represents a serious threat to both unvaccinated and vaccinated animals. This study surveyed dogs with or without clinical signs related to canine distemper from different regions of Brazil from 2008 to 2012. A total of 155 out of 386 animals were found to be CDV positive by RT-PCR; 37 (23.8%) dogs were asymptomatic at the time of sampling, and 90 (58%) displayed clinical signs suggestive of distemper. Nineteen (12.2%) dogs had a record of complete vaccination, 15 (9.6%) had an incomplete vaccination protocol, and 76 (49%) had no vaccination record. Based on the sequence analysis of the complete hemagglutinin gene of 13 samples, 12 of the strains were characterized as Genotype South America-I/Europe. Considering criteria of at least 95% nucleotide identity to define a genotype and 98% to define a subgenotype, South America-I/Europe sequences segregated into eight different phylogenetically well-defined clusters that circulated or co-circulated in distinct geographical areas. Together, these findings highlight the relevance of CDV infection in Brazilian dogs, demonstrate the predominance of one genotype in Brazil and support the need to intensify the current control measures.

  13. Response of banana genotypes to yellow Sigatoka in coastal tablelands of Sergipe, Brazil

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    Zilná Brito de Rezende Quirino

    Full Text Available Brazil has low availability of productive commercial cultivars with appropriate size and resistance to yellow Sigatoka. The objective of this study was to evaluate the behavior of different banana genotypes against yellow Sigatoka at conditions of Coastal Tablelands of Sergipe. The experiment was conducted at the Experimental Field of Embrapa Tabuleiros Costeiros, municipality of Nossa Senhora das Dores. The experimental design was randomized blocks design with 22 genotypes and three replications, six plants per plot. The genotypes tested were: Enxerto-33, Japira-106, FHIA-23, YB42-17, YB42-47, FHIA-18, PA42-44, PA94-01, PV79-34, Pacovan Ken, Pacovan, Prata-Anã, Maravilha, Garantida, Princesa, Tropical, Maçã, Grande Naine, FHIA-02, Caipira, Bucaneiro and Thap Maeo. The severity of yellow Sigatoka was evaluated at 60, 270 and 420 days after planting (DAP (from July/2009 to July/2010, using a descriptive scale of Stover. Then, the infection rate was calculated at 60, 270 and 420 DAP, and was compared by Scott-Knott test at 5%. It was observed that genotypes have the same behavior at 270 DAP. At 60 DAP, genotypes with lower infection rate were Bucaneiro, Enxerto-33, Japira-106, YB42-17, FHIA-02, FHIA-18, FHIA-23, PA42-44, PA94-01, Caipira, Maçã, Prata-Anã and Thap Maeo. At 420 DAP, the lowest rates were obtained for genotypes YB42-17, FHIA-23, Princesa, YB42-47, Tropical, Grand Naine, Caipira, Maçã, Garantida, Bucaneiro, Pacovan Ken and Thap Maeo.

  14. HIV-1 genotypic resistance profile of patients failing antiretroviral therapy in Paraná, Brazil

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    Paula Virginia Michelon Toledo

    2010-08-01

    Full Text Available Antiretroviral therapy (ART has reduced morbidity and mortality related to human immunodeficiency virus (HIV infection, but in spite of this advance, HIV mutations decrease antiretroviral susceptibility, thus contributing to treatment failure in patients. Genotyping HIV-1 allows the selection of new drugs after initial drug failure. This study evaluated the genotypic profile of HIV-1 isolates from treated (drug-experienced patients in Paraná, Brazil. The prevalence of mutations in reverse transcriptase (RT and protease (PR genes were assessed. We analyzed 467 genotypes of patients with HIV-1 viral loads above 1,000 copies/mL. Mutations at HIV-1 RT and PR genes and previously used ART regimens were recorded. The most prevalent RT mutations were: 184V (68.31%, 215YF (51.6%, 103NS (46%, 41L (39.4%, 67N (38.54%, 210W (23.5%, 190ASE (23.2%, and 181C (17.4%. PR mutations were 90M (33.33%, 82ATFS (29%, 46I (26.8% and 54V (22.2%. The prevalence of mutations was in line with previous national and international reports, except to nonnucleoside analogue reverse transcriptase inhibitors related mutations, which were more prevalent in this study. Previous exposure to antiretroviral drugs was associated with genotypic resistance to specific drugs, leading to treatment failure in HIV patients.

  15. Genotypic distribution of HHV-8 in AIDS individuals without and with Kaposi sarcoma: Is genotype B associated with better prognosis of AIDS-KS?

    Science.gov (United States)

    Tozetto-Mendoza, Tania Regina; Ibrahim, Karim Yaqub; Tateno, Adriana Fumie; Oliveira, Cristiane Mendes de; Sumita, Laura Massami; Sanchez, Maria Carmem Arroyo; Luna, Expedito José; Pierrotti, Ligia Camara; Drexler, Jan Felix; Braz-Silva, Paulo Henrique; Pannuti, Claudio Sérgio; Romano, Camila Malta

    2016-11-01

    AIDS-associated Kaposi's sarcoma (AIDS-KS) caused by human herpes virus 8 (HHV-8) is the most severe and resistant form of KS tumor. Our aim was to verify whether there is an association between HHV-8 variability and development of AIDS-KS in Brazil by comparing the HHV-8 variability between individuals without and with KS. Saliva samples and blood, when available, were analyzed by polymerase chain reaction (PCR) techniques for detection of the fragments of ORF K1 of HHV-8, which were then genotyped and analyzed regarding the genetic variability. Our study described 106 positive cases for HHV-8 in the saliva from 751 AIDS patients without previous KS. In addition, we performed a phylogenetic analysis of HHV-8 in 34 of the 106 AIDS patients without KS and in 33 of the 37 patients with active KS. The distribution of HHV-8 genotypes A, B, C, and F in AIDS individuals was indistinguishable by comparing non-KS and KS groups, as well as regarding ethnicity. Considering the KS group, genotype B was associated with better prognosis of KS tumor. Interestingly, we found a particular profile of diversity within clade C and 2 recombinant patterns of HHV-8 in the saliva of AIDS individuals without KS. We emphasize the need to achieve standard genotyping protocol for ORF K1 amplification, thus allowing for substantial detection of HHV-8 variants. Our findings can shed light on the role of HHV-8 variability in the pathogenesis of AIDS-KS.

  16. New Genotype of Dengue Type 3 Virus Circulating in Brazil and Colombia Showed a Close Relationship to Old Asian Viruses

    OpenAIRE

    Victor Hugo Aquino; Alberto Anastacio Amarilla; Helda Liz Alfonso; Weber Cheli Batista; Luiz Tadeu Moraes Figueiredo

    2009-01-01

    Dengue type 3 genotype V viruses have been recently detected in Brazil and Colombia. In this study, we described another Brazilian isolate belonging to this genotype. Phylogenetic analysis including dengue type 3 viruses isolated worldwide showed that Brazilian and Colombian viruses were closely related to viruses isolated in Asia more than two decades ago. The characteristic evolutionary pattern of dengue type 3 virus cannot explain the close similarity of new circulating viruses with old vi...

  17. Characteristics of general distribution of hepatitis B virus genotypes in China

    Institute of Scientific and Technical Information of China (English)

    Chang-Tai Zhu; Chun-Lei Dong

    2009-01-01

    BACKGROUND:Based on differences in the virus nucleotide sequence, hepatitis B virus (HBV) genotypes are presently divided into genotypes A-H. The geographic distributions of HBV genotypes differ in countries and regions. To determine the general characteristics of their distributions in the mainland of China, we reviewed articles on HBV genotypes published in China. METHODS:The Wanfang Database and the CNKI Database were searched for original articles involving HBV in China, and then the data from the articles were classiifed according to genotype and latitude and analyzed using SPSS 11.0. RESULTS:The main HBV genotypes were C, B and BC, and their rates were 50.99%, 35.58%, 6.07%, respectively;other genotypes were rare. There was a negative correlation between latitude and the rate of genotype B (r=-0.782,P0.05). CONCLUSIONS:In China, HBV genotype C predominates, followed by genotype C and mixed genotype BC; genotypes A, D and others are rare. With an increasing latitude, the distribution of genotype B decreases gradually, while that of genotype C tends to increase. The other genotypes do not show any changes.

  18. Distribution patterns of riodinid butterflies (Lepidoptera: Riodinidae) from southern Brazil

    OpenAIRE

    Siewert, Ricardo Russo; Iserhard,Cristiano Agra; Romanowski, Helena Piccoli; Callaghan,Curtis J.; Moser, Alfred

    2014-01-01

    Background: The aim of this study was to synthesize the knowledge of Riodinidae butterflies (Lepidoptera: Papilionoidea) in Rio Grande do Sul state (RS), southern Brazil, evaluating the role of climatic, topographic, and vegetational variables on the observed patterns of occurrence and distribution of these butterflies in the Pampa and Atlantic Forest biomes. The records of riodinid butterflies in RS were collected from published studies and the examination of museum collections in Brazil. Re...

  19. Distribution study of Chlamydia trachomatis genotypes in symptomatic patients in Buenos Aires, Argentina: association between genotype E and neonatal conjunctivitis

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    Corominas Ana I

    2010-02-01

    Full Text Available Abstract Background Chlamydia trachomatis infections are the most prevalent sexually transmitted bacterial infections in the world. There is scarce data available referring to the distribution of C. trachomatis genotypes in Argentina. The aim of this study was to identify the genotypes of C. trachomatis circulating in the metropolitan area of Buenos Aires (Argentina associated with ophthalmia neonatorum and genital infections. Findings From 2001 to 2006, 199 positive samples for C. trachomatis infection from symptomatic adult patients and neonates with ophthalmia neonatorum from two public hospitals were studied. C. trachomatis genotypes were determined by PCR-RFLP of an ompA fragment. Genotype E was the most prevalent regardless of the sample origin (46.3% 57/123 in adults and 72.4% 55/76 in neonates, followed by genotype D (19.5% 24/123 and F (14.6% 18/123 in adults, and G (9.2% 7/76 and D (7.9% 6/76 in neonates. We detected a significantly higher frequency of genotype E (p ophthalmia neonatorum than in genital specimens. Genotype D was associated with genital localization (p Conclusion We found a particularly increased frequency of C. trachomatis genotype E in neonatal conjunctivitis, which may indicate an epidemiological association between this genotype and the newborn population. The present study also contributed to increase the knowledge on genotype distribution of Chlamydia trachomatis in symptomatic adult patients in Buenos Aires, Argentina, in which genotypes E, D and F were the predominant ones.

  20. Distribution and molecular evolution of bacillus anthracis genotypes in Namibia.

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    Wolfgang Beyer

    Full Text Available The recent development of genetic markers for Bacillus anthracis has made it possible to monitor the spread and distribution of this pathogen during and between anthrax outbreaks. In Namibia, anthrax outbreaks occur annually in the Etosha National Park (ENP and on private game and livestock farms. We genotyped 384 B. anthracis isolates collected between 1983-2010 to identify the possible epidemiological correlations of anthrax outbreaks within and outside the ENP and to analyze genetic relationships between isolates from domestic and wild animals. The isolates came from 20 animal species and from the environment and were genotyped using a 31-marker multi-locus-VNTR-analysis (MLVA and, in part, by twelve single nucleotide polymorphism (SNP markers and four single nucleotide repeat (SNR markers. A total of 37 genotypes (GT were identified by MLVA, belonging to four SNP-groups. All GTs belonged to the A-branch in the cluster- and SNP-analyses. Thirteen GTs were found only outside the ENP, 18 only within the ENP and 6 both inside and outside. Genetic distances between isolates increased with increasing time between isolations. However, genetic distance between isolates at the beginning and end of the study period was relatively small, indicating that while the majority of GTs were only found sporadically, three genetically close GTs, accounting for more than four fifths of all the ENP isolates, appeared dominant throughout the study period. Genetic distances among isolates were significantly greater for isolates from different host species, but this effect was small, suggesting that while species-specific ecological factors may affect exposure processes, transmission cycles in different host species are still highly interrelated. The MLVA data were further used to establish a model of the probable evolution of GTs within the endemic region of the ENP. SNR-analysis was helpful in correlating an isolate with its source but did not elucidate

  1. Infection of the central nervous system with dengue virus 3 genotype I causing neurological manifestations in Brazil

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    Danilo Bretas de Oliveira

    2016-02-01

    Full Text Available Abstract: A case of dengue virus 3 (DENV-3 genotype I infection with neurological manifestations occurred in Belo Horizonte, Minas Gerais in October 2012. The serotype was detected by PCR, and the genotype was assessed by sequencing and phylogenetic analysis of the C-prM region. The virus causing neurological manifestations clustered with other sequences of DENV-3 genotype I. Because neurological manifestations of DENV are possibly misdiagnosed in Brazil, this study serves as an alert of the importance of DENV diagnoses in CNS infections.

  2. Potential geographic distribution of hantavirus reservoirs in Brazil.

    Science.gov (United States)

    de Oliveira, Stefan Vilges; Escobar, Luis E; Peterson, A Townsend; Gurgel-Gonçalves, Rodrigo

    2013-01-01

    Hantavirus cardiopulmonary syndrome is an emerging zoonosis in Brazil. Human infections occur via inhalation of aerosolized viral particles from excreta of infected wild rodents. Necromys lasiurus and Oligoryzomys nigripes appear to be the main reservoirs of hantavirus in the Atlantic Forest and Cerrado biomes. We estimated and compared ecological niches of the two rodent species, and analyzed environmental factors influencing their occurrence, to understand the geography of hantavirus transmission. N. lasiurus showed a wide potential distribution in Brazil, in the Cerrado, Caatinga, and Atlantic Forest biomes. Highest climate suitability for O. nigripes was observed along the Brazilian Atlantic coast. Maximum temperature in the warmest months and annual precipitation were the variables that most influence the distributions of N. lasiurus and O. nigripes, respectively. Models based on occurrences of infected rodents estimated a broader area of risk for hantavirus transmission in southeastern and southern Brazil, coinciding with the distribution of human cases of hantavirus cardiopulmonary syndrome. We found no demonstrable environmental differences among occurrence sites for the rodents and for human cases of hantavirus. However, areas of northern and northeastern Brazil are also apparently suitable for the two species, without broad coincidence with human cases. Modeling of niches and distributions of rodent reservoirs indicates potential for transmission of hantavirus across virtually all of Brazil outside the Amazon Basin.

  3. Potential geographic distribution of hantavirus reservoirs in Brazil.

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    Stefan Vilges de Oliveira

    Full Text Available Hantavirus cardiopulmonary syndrome is an emerging zoonosis in Brazil. Human infections occur via inhalation of aerosolized viral particles from excreta of infected wild rodents. Necromys lasiurus and Oligoryzomys nigripes appear to be the main reservoirs of hantavirus in the Atlantic Forest and Cerrado biomes. We estimated and compared ecological niches of the two rodent species, and analyzed environmental factors influencing their occurrence, to understand the geography of hantavirus transmission. N. lasiurus showed a wide potential distribution in Brazil, in the Cerrado, Caatinga, and Atlantic Forest biomes. Highest climate suitability for O. nigripes was observed along the Brazilian Atlantic coast. Maximum temperature in the warmest months and annual precipitation were the variables that most influence the distributions of N. lasiurus and O. nigripes, respectively. Models based on occurrences of infected rodents estimated a broader area of risk for hantavirus transmission in southeastern and southern Brazil, coinciding with the distribution of human cases of hantavirus cardiopulmonary syndrome. We found no demonstrable environmental differences among occurrence sites for the rodents and for human cases of hantavirus. However, areas of northern and northeastern Brazil are also apparently suitable for the two species, without broad coincidence with human cases. Modeling of niches and distributions of rodent reservoirs indicates potential for transmission of hantavirus across virtually all of Brazil outside the Amazon Basin.

  4. Genotyping and antimicrobial susceptibility of Clostridium perfringens isolated from Tinamidae, Cracidae and Ramphastidae species in Brazil

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    Rodrigo Otávio Silveira Silva

    2014-03-01

    Full Text Available The aim of this study was to isolate, genotype and evaluate the antimicrobial susceptibility of Clostridium perfringens found in species Tinamidae, Cracidae and Ramphastidae in Brazil. C. perfringens was isolated in 13 (5% out of 260 swab samples and five (8.3% out of 60 stool samples. All strains were classified as C. perfringens type A, and nine (50% were positive for the beta-2 toxin-encoding gene. No strains were positive for the necrotic enteritis toxin B-like (NetB-encoding gene. All isolates were susceptible to penicillin, metronidazole and vancomycin, whereas four (22.2%, five (27.8% and 13 (72.2% strains were considered resistant to erythromycin, oxytetracycline and lincomycin, respectively.

  5. Diversity of genotypes in CTX-M-producing Klebsiella pneumoniae isolated in different hospitals in Brazil

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    Thiago Pavoni Gomes Chagas

    2011-10-01

    Full Text Available OBJECTIVE: The present study was undertaken to characterize CTX-M ESBL-producing Klebsiella pneumoniae collected from hospitals in different cities of Brazil. MATERIAL AND METHODS: Eighty-five K. pneumoniae strains isolated from hospitalized patients in six different hospitals of three cities of Brazil were analyzed. ESBL production was confirmed by the standard double-disk synergy test and the Etest®. The MIC50 and MIC90 for ESBL-producing isolates were determined by the Etest® method. The antimicrobial susceptibilities of bacterial isolates were determined using the agar diffusion method according to the CLSI. Screening for blaTEM, blaSHV, blaCTX-M genes and class 1 integron was performed by PCR amplification. To determine the genomic diversity of CTX-M-producers, isolates were analyzed by macrorestriction profile analysis following PFGE. RESULTS AND DISCUSSION: Seventy-one K. pneumoniae isolates were ESBL-producing. PCR and sequencing experiments detected 38 CTX-M-producing K. pneumoniae belonged to groups CTX-M 1, CTX-M 2, CTX-M 8 and CTX-M 9. The association of different types ESBL (CTX-M, SHV and TEM was frequent. All K. pneumoniae isolates carried class 1 integron. PFGE analysis revealed thirty-one clonal types among CTX-M-producing isolates. The data presented herein illustrate the diversity of genotypes of CTX-M producing K. pneumoniae among Brazilians hospitals.

  6. Prevalence, genotypes and factors associated with HCV infection among prisoners in Northeastern Brazil

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    de Oliveira Santos, Bruno Fernandes; de Santana, Nathalie Oliveira; Franca, Alex Vianey Callado

    2011-01-01

    AIM: To determine hepatitis C virus (HCV) seroprevalence and its genotypes, and to identify the factors associated with HCV infection. METHODS: This cross-sectional study, conducted in two prisons (one male and one female) in the State of Sergipe, Brazil, comprised 422 subjects. All of the prisoners underwent a rapid test for the detection of HCV antibodies. Patients with a positive result were tested for anti-HCV by enzyme linked immunosorbent assay and for HCV RNA by qualitative polymerase chain reaction (PCR). The virus genotype was defined in every serum sample that presented positive for PCR-HCV. In order to determine the factors independently associated with positive serology for HCV, multivariate logistic regression was used. RESULTS: HCV seroprevalence was 3.1%. Of the 13 subjects with positive anti-HCV, 11 had viremia confirmed by PCR. Of these, 90.9% had genotype 1. A total of 43 (10.2%) were injecting drug users, and HCV seroprevalence in this subgroup was 20.6%. The variable most strongly associated with positive serology for HCV was use of injecting drugs [odds ratio (OR), 23.3; 95% confidence interval (CI), 6.0-90.8]. Age over 30 years (OR, 5.5; 95%CI, 1.1-29.2), history of syphilis (OR, 9.8; 95%CI, 1.7-55.2) and history of household contact with HCV positive individual (OR, 14.1; 95%CI, 2.3-85.4) were also independently associated with HCV infection. CONCLUSION: Most of the HCV transmissions result from parenteral exposure. However, there is evidence to suggest a role for sex and household contact with an infected subject in virus transmission. PMID:21799649

  7. Prevalence, genotypes and factors associated with HCV infection among prisoners in Northeastern Brazil

    Institute of Scientific and Technical Information of China (English)

    Bruno Fernandes de Oliveira Santos; Nathalie Oliveira de Santana; Alex Vianey Callado Franca

    2011-01-01

    AIM: To determine hepatitis C virus (HCV) seroprevalence and its genotypes, and to identify the factors associated with HCV infection. METHODS: This cross-sectional study, conducted in two prisons (one male and one female) in the State of Sergipe, Brazil, comprised 422 subjects. All of the prisoners underwent a rapid test for the detection of HCV antibodies. Patients with a positive result were tested for anti- HCV by enzyme linked immunosorbent assay and for HCV RNA by qualitative polymerase chain reaction (PCR). The virus genotype was defined in every serum sample that presented positive for PCR-HCV. In order to determine the factors independently associated with positive serology for HCV, multivariate logistic regression was used. RESULTS: HCV seroprevalence was 3.1%. Of the 13 subjects with positive anti-HCV, 11 had viremia confirmed by PCR. Of these, 90.9% had genotype 1. A total of 43 (10.2%) were injecting drug users, and HCV seroprevalence in this subgroup was 20.6%. The variable most strongly associated with positive serology for HCV was use of injecting drugs [odds ratio (OR), 23.3; 95% confidence interval (CI), 6.0-90.8]. Age over 30 years (OR, 5.5; 95%CI, 1.1-29.2), history of syphilis (OR, 9.8; 95%CI, 1.7-55.2) and history of household contact with HCV positive individual (OR, 14.1; 95%CI, 2.3-85.4) were also independently associated with HCV infection. CONCLUSION: Most of the HCV transmissions result from parenteral exposure. However, there is evidence to suggest a role for sex and household contact with an infected subject in virus transmission.

  8. Fusarium keratitis in Brazil: genotyping, in vitro susceptibilities, and clinical outcomes

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    Oechsler RA

    2013-08-01

    Full Text Available Rafael A Oechsler,1 Tiago M Yamanaka,1 Paulo JM Bispo,1 Juliana Sartori,1 Maria Cecilia Zorat Yu,1 Analy Salles A Melo,2 Darlene Miller,3 Ana Luisa Hofling-Lima1 1Ophthalmology Department, 2Division of Infectious Diseases, Internal Medicine Department, Federal University of São Paulo, São Paulo, Brazil; 3Bascom Palmer Eye Institute, Miller School of Medicine, University of Miami, Miami, FL, USA Background: The purpose of this paper is to describe clinical characteristics and determine correlations between clinical outcomes and antifungal susceptibility among molecularly characterized ocular Fusarium isolates in Brazil. Methods: Forty-one Fusarium isolates obtained from 41 eyes of 41 patients were retrieved from the ophthalmic microbiology laboratory at São Paulo Federal University and grown in pure culture. These isolates were genotyped and antifungal susceptibilities determined for each isolate using a broth microdilution method. The corresponding medical records were reviewed to determine clinical outcomes. Results: The 41 isolates were genotypically classified as Fusarium solani species complex (36 isolates, 88%, Fusarium oxysporum species complex (two isolates, 5%, Fusarium dimerum species complex (one isolate, 2% and two isolates that did not group into any of the species complexes. Final best corrected visual acuity varied from 20/20 to light perception and was on average 20/800 (logarithm of the minimum angle of resolution (LogMAR 1.6. A history of trauma was the most common risk factor, being present in 21 patients (51%. Therapeutic penetrating keratoplasty was necessary in 22 patients (54%. Amphotericin B had the lowest minimum inhibitory concentration for 90% of isolates (MIC90 value (2 µg/mL and voriconazole had the highest (16 µg/mL. There was an association between a higher natamycin MIC and need for therapeutic penetrating keratoplasty (Mann–Whitney test, P < 0.005. Conclusion: Trauma was the main risk factor, and

  9. Global geographic distribution of Trichinella species and genotypes.

    Science.gov (United States)

    Feidas, Haralambos; Kouam, Marc K; Kantzoura, Vaia; Theodoropoulos, Georgios

    2014-08-01

    Maximum entropy ecological niche modeling was utilized to describe the global geographic distribution of Trichinella species and genotypes and to assess their invasive risk in new areas other than the ones currently known. Also, space-time scan statistic was utilized to identify global spatiotemporal clusters of infection. A database containing 3209 records for 12 species and genotypes identified at the International Trichinella Reference Center (ITRC) as well as climate, elevation, and land cover data extracted from various databases were used. Ecological niche modeling implemented in the Maxent program indicated new potential ranges for T. spiralis (T1), T. nativa (T2), T. britovi (T3), T. pseudospiralis (T4), T. murrelli (T5), T6, T. papuae (T10), and T. zimbabwensis (T11). The area under the curve values for the test data of the models ranged from 0.901 to 0.998, indicating that the models were very good to excellent. The most important bioclimatic factor in modeling the ranges for T. spiralis (T1), T. nativa (T2), T. britovi (T3), T6, and T. zimbabwensis (T11) was temperature, for T. pseudospiralis (T4) and T. papuae (T10) was precipitation, and for T. murrelli (T5) was land cover. T. spiralis (T1), T. britovi (T3), and T. pseudospiralis (T4) had the same primary land cover which was "Grass Crops". The primary land covers were "Conifer Boreal Forest" for T. nativa (T2), "Cool Fields and Woods" for T. murrelli (T5), "Upland Tundra" for T6, "Tropical Rainforest" for T. papuae (T10), and "Crops and Town" for T. zimbabwensis (T11). The scan statistic analyses revealed the presence of significant spatiotemporal clusters (p<0.05) for T. spiralis (T1), T. nativa (T2), T. britovi (T3), T. pseudospiralis (T4), T. murrelli (T5), T6, and T. nelsoni (T7). No significant clusters were found for T. papuae (T10) and T. zimbabwensis (T11).

  10. The distribution of hepatitis B virus genotypes in Thailand.

    Science.gov (United States)

    Louisirirotchanakul, Suda; Olinger, Christophe M; Arunkaewchaemsri, Panida; Poovorawan, Yong; Kanoksinsombat, Chinda; Thongme, Chittima; Sa-Nguanmoo, Pattaratida; Krasae, Sasithorn; Theamboonlert, Apiradee; Oota, Sineenart; Fongsatitkul, Ladda; Puapairoj, Chintana; Promwong, Charuporn; Weber, Bernard

    2012-10-01

    Phylogenetic analysis was performed on hepatitis B virus (HBV) strains obtained from 86 hepatitis B surface antigen (HBsAg) positive donors from Thailand originating throughout the country. Based on the S gene, 87.5% of strains were of genotype C while 10.5% were of genotype B, with all genotype B strains obtained from patients originating from the central or the south Thailand. No genotype B strains were found in the north of Thailand. Surprisingly, one patient was infected with a genotype H strain while another patient was infected with a genotype G strain. Complete genome sequencing and recombination analysis identified the latter as being a genotype G and C2 recombinant with the breakpoint around nucleotide position 700. The origin of the genotype G fragment was not identifiable while the genotype C2 fragment most likely came from strains circulating in Laos or Malaysia. The performance of different HBsAg diagnostic kits and HBV nucleic acid amplification technology (NAT) was evaluated. The genotype H and G/C2 recombination did not interfere with HBV detection.

  11. High proportion of hepatitis C virus genotypes 1 and 3 in a large cohort of patients from Southern Brazil

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    Cláudia Maria Dornelles da Silva

    2007-11-01

    Full Text Available Hepatitis C virus (HCV isolates have been divided into six genotypes (1 to 6. The duration of hepatitis C standard treatment is 48 weeks for patients infected with HCV genotype 1 vs 24 weeks for those infected with genotypes 2 and 3. A total of 1544 HCV isolates from chronic patients living in the southern Brazilian states of Rio Grande do Sul (RS, n = 627 and Santa Catarina (SC, n = 917 were genotyped by restriction fragment length polymorphism (RFLP of polymerase chain reaction (PCR products. In RS, 338 (53.9%; 95% CI 50.0 - 57.8%, 34 (5.4%; 95% CI 3.8 - 7.4% and, 255 (40.7%; 95% CI 36.9 - 44.6% samples were from genotypes 1, 2, and 3, respectively. In SC, 468 (51%; 95% CI 47.8 - 54.2%, 26 (2.9%; 95% CI 1.9 - 4.1% and, 423 (46.1%; 95% CI 42.9 - 49.3% samples were from genotypes 1, 2, and 3, respectively. Genotyping results were confirmed by direct nucleotide sequencing of PCR products derived from 68 samples, without any discrepancy between PCR-RFLP and nucleotide sequencing methods. In conclusion, almost half of the hepatitis C patients from South of Brazil are infected by genotypes 2 and 3 and, these results have important consequential therapeutic implications as they can be treated for only 24 weeks, not 48.

  12. Detection of the emerging rotavirus G12P[8] genotype at high frequency in brazil in 2014: Successive replacement of predominant strains after vaccine introduction.

    Science.gov (United States)

    Luchs, Adriana; Cilli, Audrey; Morillo, Simone Guadagnucci; Gregório, Debora de Souza; de Souza, Karen Aparecida Farias; Vieira, Heloísa Rosa; Fernandes, Adeline de Mira; Carmona, Rita de Cássia Compagnoli; Timenetsky, Maria do Carmo Sampaio Tavares

    2016-04-01

    The continuum characterization of rotavirus (RVA) genotypes is essential to understand how vaccine introduction could impact virus epidemiology. In the present study, an unexpected rapid changing pattern of RVA genotypes distribution in Brazilian population during three followed seasons is described. From January/2012 to December/2014, a total of 3441 fecal specimens were collected from collaborating centers across Southern, Southeastern and Midwest of Brazil. All specimens were screened for RVA using ELISA, and genotyped by RT-PCR. Differences in proportions were tested using Chi-Squares. A p-value of less than 0.05 was considered statistically significant. RVA was detected in 19.7% (677/3441). Among RVA positive cases (n=677), a total of 652 (96.3%) samples were successfully amplified by RT-PCR. G3P[8] remained prevalent in 2012 (37.6%, 69/185) and 2013 (40.1%, 74/186) (χ(2)=0.107, p=0.743), but declined markedly in 2014 (3.5%, 10/281) (χ(2)=71.770, p=0.000). G12P[8] was second highest strain in 2012 (22.7%, 42/185), decrease rapidly in 2013 (2.7%, 5/186) (χ(2)=26.224, p=0.000) and re-emerged as the predominant genotype in 2014 (86.6%, 243/281) (χ(2)=118.299, p=0.000). From July/2014, G12P[8] was the single genotype detected in all regions studied. The sudden emergence, spread and predominance of G12P[8] strain in Brazil, raised the hypothesis of a possible G12 outbreak being in progress. Nationally, the long term decline in gastroenteritis hospitalization observed in the country after RVA vaccine introduction was confirmed. Nevertheless, the sharp increase in diarrhea hospitalization prevalence from 2013 to 2014 observed in Southern and Southeastern regions is consistent with what appears to be an outbreak of G12P[8]. Continued surveillance is needed to verify the effectiveness of the RotarixTM vaccine in Brazil together with potential emergence of unusual genotypes.

  13. Genotypic characterization and phylogenetic analysis of Cryptosporidium sp. from domestic animals in Brazil.

    Science.gov (United States)

    Huber, F; da Silva, S; Bomfim, T C B; Teixeira, K R S; Bello, A R

    2007-11-30

    The purpose of the present study was the genetic characterization, sequencing and phylogenetic analysis of 18S rDNA sequences of Cryptosporidium isolates obtained from different animal hosts in Brazil. Fecal samples containing Cryptosporidium oocysts were obtained from chickens, ducks, quails, guinea pigs, dairy calves, dogs and cats. For amplification of 18S rDNA sequences the Secondary-PCR product of the extracted DNA from fecal suspension of each studied animal was utilized. The primary genetic characterization of Cryptosporidium sp. was performed using RFLP with the enzymes SspI and VspI. DNA samples were sequenced and subjected to phylogenetic analysis. The results showed C. baileyi infecting two ducks and one quail and C. melagridis infecting one chicken. The sequences obtained from Cryptosporidium sp. infecting guinea pigs were not identified within groups of known Cryptosporidium species. The isolates found parasitizing cats and one dog were diagnosed as C. felis and C. canis, respectively. One isolate of calf origin was identified as C. parvum. The phylogenetic analysis showed clear distribution of isolates between two Cryptosporidium sp. groups according to their gastric or intestinal parasitism. A great genetic distance was observed between C. felis and C. canis from Brazil when compared to the reference sequences obtained from GenBank. The results obtained during this study constitute the first report of rDNA sequences from C. baileyi, C. meleagridis, C. felis, C. canis and C. parvum isolated in Brazil.

  14. Distribution of Hepatitis B virus genotypes among healthy blood donors in eastern part of North India

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    Kumar Kailash

    2011-01-01

    Full Text Available Aim: We evaluated the distribution HBV genotypes among non-remunerated healthy blood donors in eastern North India. Materials and Methods: During screening of donated blood, 176 consecutive HBsAg positive, samples comprised the study. HBV-DNA was quantitative detected in 150 samples by PCR. HBV genotype was determined by identifying genotype-specific DNA band using nested PCR. Results: Majorities were of age group 31-40 yrs (65.3%. Males (92.7% outnumbered females (7.3% and were HbeAg-negative HBsAg carriers. Over all, genotype-A was the most prevalent (54% followed by D (21.3%. We did not find genotype-G and H. Districts under study, divided into four zones: Zone-I genotype-A was most common (62.3% followed by D (18.8%; Zone-II genotype-C (41.2% was more frequent followed by D (20.6% and A (17.7%. Zone-III in adjoining Bihar state close to Zone-I, A was more prevalent (81.8% followed by B and C (9.1%. In Zone-IV adjoining Zone- II had genotype-A (100% only. Genotype-D had more sporadic distribution. Genotype-E and F were prevalent in Zone I and II (3/150, 2%. Conclusions: Among blood donors HBV genotype-A followed by D was the most prevalent in eastern North India. Genotype-A had pattern of distribution signifying common focus, while D was more sporadic and C had single large pocket (Zone-II probably common focus but restricting to particular area. Evidences are suggestive of association of HBV genotype in liver dysfunction. An effective treatment and preventive strategies based of genotypes will reduce the disease burden and increase the blood safety.

  15. Distribution of Hepatitis B Virus Genotypes and Its Clinical Significance in Hubei Province, China

    Institute of Scientific and Technical Information of China (English)

    TONG Qiaoxia; WU Yanyan; LUO Duande

    2007-01-01

    The distribution of hepatitis B virus genotype in Hubei province and its clinical significance were investigated. HBV genotypes of 276 patients were detected by PCR-microplate sandwich hybrization-ELISA technique. The level of HBV DNA was detected by using PCR-fluorescence quantification test. Among 276 patients, there were 78 cases of HBV asymptomatic carriers, 110 cases of chronic hepatitis B (CHB), 62 cases of severe hepatitis (SH) or liver cirrhosis (LC) and 26 cases of hepatocellular carcinoma (HCC). The genotypes of HBV included C, B, mixtures (B+C, B+D, C+D) and D, accounting for 55.8%, 25.4%, 16.7% and 2.1% respectively. The average level of HBV DNA in genotypes C, B, mixtures and D was 1.20×106, 7.81×104, 3.26×105 and 5.01×104 copies/mL respectively. The ratio of SH, LC and HCC in genotype B, C and mixtures was 20%, 30% and 48% respectively. Statistical analysis revealed the percentage of genotype mixtures infection was significantly higher than that of genotype B infection. There was no significant difference in the percentage between genotype B and genotype C or between genotype C and mixtures. The distribution of genotype B, C and mixtures in SH, LC and HCC was significantly different. The frequency of HCC was zero in patients with co-infection. Genotype D was only related with SH and LC. The increased ALT could be converted to categorical grades of severity. From mild, moderate to severity,the prevalence of genotype C showed an opposite trend, although no statistically significant difference was observed. The HBeAg positive rate was higher in patients with genotype C infection than in those with genotype B, especially in the patients whose ages were from 31 to 40 years old. Compared with genotype B, genotype C showed a higher HBeAg positive rate in patients with SH and LC. The percentage of SH, LC and HCC was higher in patients with genotype C and mixtures infection. On the contrary, the percentage of genotype B was lower. The HBeAg positive rate

  16. GENOTYPE BY ENVIRONMENT INTERACTIONS IN Pinus taeda L. IN SOUTH AND SOUTH-EAST BRAZIL

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    Estefano Paludzyszyn Filho

    2001-01-01

    Full Text Available Genotype x environment interactions of stem volume were investigated by assessing the variation in 46 open-pollinated loblolly pine (Pinus taeda L. families from first-generation cloned seed orchard in four genetic trials in the south and south-east Brazil. They were used to obtain least squares and restricted maximum likelihood (REML estimates of variance components. Familie-by- trial interaction effects were evaluated by adjusting the mixed univariate model that contained data of two and four places tested by the likelihood ratio test. Breeding values from local data (univarate procedure and predicted to the others sites (multivariate procedure were obtained from best linear unbiased prediction (BLUP. The adjusted and average (obtained from local and predicted to other sites breeding values were used to select parents and trees. The interaction effects and the adjusting of the mixed models were statistically significant, respectively, by F test and by likelihood ratio test. The loss of potential gain, sustained by not selecting the best families by site was 3.2%. For parents, the loss in mean productivity by indirect selection was respectively 2.3%. In the individual tree selection for seedling seed orchard, no loss of potential gain was observed when selection was carried by average genetic breeding values. For clonal seed orchard with the selection of ten more greater genetic breeding values trees, the interaction cause a inflation of 2% in the average productivity. In this case, the selection by average breeding values was the best procedure and may prove to be a useful tool, in selection stem volume, when genotype x environment interaction is significant.

  17. Fusarium keratitis in Brazil: genotyping, in vitro susceptibilities, and clinical outcomes

    Science.gov (United States)

    Oechsler, Rafael A; Yamanaka, Tiago M; Bispo, Paulo JM; Sartori, Juliana; Yu, Maria Cecilia Zorat; Melo, Analy Salles A; Miller, Darlene; Hofling-Lima, Ana Luisa

    2013-01-01

    Background The purpose of this paper is to describe clinical characteristics and determine correlations between clinical outcomes and antifungal susceptibility among molecularly characterized ocular Fusarium isolates in Brazil. Methods Forty-one Fusarium isolates obtained from 41 eyes of 41 patients were retrieved from the ophthalmic microbiology laboratory at São Paulo Federal University and grown in pure culture. These isolates were genotyped and antifungal susceptibilities determined for each isolate using a broth microdilution method. The corresponding medical records were reviewed to determine clinical outcomes. Results The 41 isolates were genotypically classified as Fusarium solani species complex (36 isolates, 88%), Fusarium oxysporum species complex (two isolates, 5%), Fusarium dimerum species complex (one isolate, 2%) and two isolates that did not group into any of the species complexes. Final best corrected visual acuity varied from 20/20 to light perception and was on average 20/800 (logarithm of the minimum angle of resolution (LogMAR) 1.6). A history of trauma was the most common risk factor, being present in 21 patients (51%). Therapeutic penetrating keratoplasty was necessary in 22 patients (54%). Amphotericin B had the lowest minimum inhibitory concentration for 90% of isolates (MIC90) value (2 μg/mL) and voriconazole had the highest (16 μg/mL). There was an association between a higher natamycin MIC and need for therapeutic penetrating keratoplasty (Mann–Whitney test, P < 0.005). Conclusion Trauma was the main risk factor, and therapeutic penetrating keratoplasty was necessary in 54% of patients. Amphotericin B had the lowest MIC90 (2 μg/mL) of the three antifungal agents tested. There was an association between higher natamycin MIC levels and corneal perforation, emphasizing the need for antifungal susceptibility testing and tailoring of antifungal strategies. PMID:24039389

  18. Antiviral therapy against chronic hepatitis B in Brazil: high rates of lamivudine resistance mutations and correlation with HBV genotypes

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    Francisco Campello do Amaral Mello

    2012-05-01

    Full Text Available The effectiveness of antiviral treatments of chronic hepatitis B has been poorly studied in Brazil. Here, hepatitis B virus (HBV DNA positivity, drug resistance mutations and their association with HBV genotypes were evaluated in chronically HBV-infected patients under different drug regimens in Brazil. The study involved 129 patients under interferon or nucleos(tide analogue therapy for a median treatment time of 12 months. One hundred and five (81% of these patients were treated with lamivudine (LAM, either in monotherapy or in combination with newer drugs, such as entecavir (ETV or tenofovir (TDF. High (37.5-100% rates of HBV DNA positivity were observed with all but one drug regimen (LAM + ETV. However, patients that were treated with ETV alone, TDF alone or with LAM combination therapies had a mean viral load that was 3-4 log lower than patients treated with LAM monotherapy. Of the patients treated with LAM, 47% developed resistance mutations. HBV genotypes A (59.1%, D (30.3% and F (9.1% were found. There was no association between the presence of LAM resistance mutations and genotypes, HBeAg status or treatment duration. Nevertheless, the rtM204V mutation was observed more frequently (12/13, 92% in genotype A than in the others (p = 0.023. Six out of nine isolates that contained the rtM204I mutation belonged to genotype D and half of them displayed a single mutation. Genotype D isolates with the rtM204V variant preferentially displayed a triple mutation, while genotype A preferentially displayed a double mutation (p = 0.04.

  19. Evidence for the co-circulation of dengue virus type 3 genotypes III and V in the Northern region of Brazil during the 2002-2004 epidemics

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    Meri Bordignon Nogueira

    2008-08-01

    Full Text Available The reintroduction of dengue virus type 3 (DENV-3 in Brazil in 2000 and its subsequent spread throughout the country was associated with genotype III viruses, the only DENV-3 genotype isolated in Brazil prior to 2002. We report here the co-circulation of two different DENV-3 genotypes in patients living in the Northern region of Brazil during the 2002-2004 epidemics. Complete genomic sequences of viral RNA were determined from these epidemics, and viruses belonging to genotypes V (Southeast Asia/South Pacific and III were identified. This recent co-circulation of different DENV-3 genotypes in South America may have implications for pathological and epidemiological dynamics.

  20. Group a rotavirus and norovirus genotypes circulating in the northeastern Brazil in the post-monovalent vaccination era.

    Science.gov (United States)

    Sá, Ana Caroline C; Gómez, Mariela M; Lima, Ila Fernanda N; Quetz, Josiane S; Havt, Alexandre; Oriá, Reinaldo B; Lima, Aldo A; Leite, José Paulo G

    2015-09-01

    Group A rotaviruses (RVA) and noroviruses (NoV) are the leading cause of acute gastroenteritis (AGE) worldwide. Childhood diarrhea deaths and hospital admissions have declined since the introduction of the monovalent (G1P[8]) vaccine (Rotarix(®) [RV1]) in the National Immunization Program in Brazil in 2006. This study aims to investigate the epidemiological profile of NoV and RVA infections from children with AGE in the Northeastern region of Brazil in the post vaccine season. Two-hundred fecal samples collected from children up to 10 years old in Fortaleza, Ceará between 2008-2009 were screened for the presence of RVA and NoV. Positive samples were genotyped and sequenced. The RVA screening revealed 12% prevalence and all RVA strains belonged to G2P[4] genotype. Phylogenetic analysis based on the 11 RVA genome segments sequenced from eight samples revealed a DS-1-like genotype constellation: I2-R2-C2-M2-A2-N2-T2-E2-H2. For NoV screening, the prevalence observed was 17% and the following genotypes were detected: GII.4 (59%), GII.12 (17%), GII.6 (9%), GII.3 (6%), and GII.? (9%). At least four different NoVs genotypes and two RVA G2P[4] variants were identified circulating in the Northeastern region of Brazil. RVA phylogenetic analysis suggests that the RVA G2P[4] strains might have originated from intragenogroup reassortment events. Whether the genetic modifications observed in these contemporary G2P[4] RVA strains may impact the long-term effectiveness of the current vaccination programs remains to be explored. These data reinforce the importance of surveillance for monitoring the emergence of new strains of RVA and NoV and their impact on cases of acute gastroenteritis.

  1. Human Papillomavirus Genotype Distribution in Invasive Cervical Cancer in Pakistan.

    Science.gov (United States)

    Loya, Asif; Serrano, Beatriz; Rasheed, Farah; Tous, Sara; Hassan, Mariam; Clavero, Omar; Raza, Muhammad; De Sanjosé, Silvia; Bosch, F Xavier; Alemany, Laia

    2016-07-30

    Few studies have assessed the burden of human papillomavirus (HPV) infection in Pakistan. We aim to provide specific information on HPV-type distribution in invasive cervical cancer (ICC) in the country. A total of 280 formalin-fixed paraffin-embedded tissue blocks were consecutively selected from Shaukat Khanum Memorial Cancer Hospital and Research Centre (Lahore, Pakistan). HPV-DNA was detected by SPF10 broad-spectrum PCR followed by DNA enzyme immunoassay and genotyping by LiPA25. HPV-DNA prevalence was 87.5% (95%CI: 83.0-91.1), with 96.1% of cases histologically classified as squamous cell carcinoma. Most of the HPV-DNA positive cases presented single infections (95.9%). HPV16 was the most common type followed by HPV18 and 45. Among HPV-DNA positive, a significantly higher contribution of HPV16/18 was detected in Pakistan (78.4%; 72.7-83.3), compared to Asia (71.6%; 69.9-73.4) and worldwide (70.8%; 69.9-71.8) and a lower contribution of HPVs31/33/45/52/58 (11.1%; 7.9-15.7 vs. 19.8%; 18.3-21.3 and 18.5%; 17.7-19.3). HPV18 or HPV45 positive ICC cases were significantly younger than cases infected by HPV16 (mean age: 43.3, 44.4, 50.5 years, respectively). A routine cervical cancer screening and HPV vaccination program does not yet exist in Pakistan; however, the country could benefit from national integrated efforts for cervical cancer prevention and control. Calculated estimations based on our results show that current HPV vaccine could potentially prevent new ICC cases.

  2. Distribution of viral genotypes and extrahepatic manifestations in patients with chronic hepatitis C in Eastern Turkey

    OpenAIRE

    YILMAZ, Sibel İBA; Erol, Serpil; ÖZBEK, Ahmet; Parlak, Mehmet

    2015-01-01

    To investigate the distribution of viral genotypes, the extrahepatic manifestations, and the relationship between genotypes and extrahepatic manifestations in patients with chronic hepatitis C. Materials and methods: The study included 62 treatment-naive patients with chronic hepatitis C infection. Genotype determination was performed by DNA sequencing analysis. To investigate extrahepatic manifestations, the patients' data, recorded prospectively during the pretreatment period, were an...

  3. Hepatitis C virus genotypes distribution and transmission risk factors in Luxembourg from 1991 to 2006

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    AIM: To analyze the Hepatitis C virus (HCV) genotype distribution and transmission risk factors in a population of unselected patients in Luxembourg. METHODS: Epidemiological information (gender, age and transmission risks) were collected from 802patients newly diagnosed for hepatitis C and living in Luxembourg, among whom 228 patients referred from prison. Genotyping using 5'noncoding (5'NC) sequencing was performed. We compared categorical data using the Fisher's exact F-test and odds ratios (OR) were calculated for evaluating association of HCV genotype and risk factors. RESULTS: The sex ratio was predominantly male (2.2) and individuals aged less than 40 years represented 49.6% of the population. Genotype l was predominant (53.4%) followed by genotype 3 (33%). Among risk factors, intravenous drug usage (IVDU) was the most frequently reported (71.4%) followed by medical-related transmission (17.6%) including haernophilia, transfusion recipients and other nosocomial reasons. Genotype 3was significantly associated to IVDU (OR=4.84,P<0.0001= whereas genotype l was significantly associated with a medical procedure (OR = 2.42,P<0.001=.The HCV genotype distribution from inmate patients differed significantly from the rest of the population (Chi-square test with four degrees of freedom, P<0.0001= with a higher frequency of genotype 3 (46.5% vs 27.5%) and a lower frequency of genotype 1 and 4 (44.7% vs 56.8%and 5.3% vs 9.6%,respectively).IVDU was nearly exclusively reported as a risk factor in prison. CONCLUSION: We report the first description of the HCV genotype distribution in Luxembourg. The repartition is similar to other European countries, with one of the highest European prevalence rates of genotype 3 (33%). Since serology screening became available in 1991,IVDU remains the most common way of HCV transmission in Luxembourg.

  4. First Report of the East-Central South African Genotype of Chikungunya Virus in Rio de Janeiro, Brazil

    Science.gov (United States)

    Souza, Thiara Manuele Alves; Azeredo, Elzinandes Leal; Badolato-Corrêa, Jessica; Damasco, Paulo Vieira; Santos, Carla; Petitinga-Paiva, Fabienne; Nunes, Priscila Conrado Guerra; Barbosa, Luciana Santos; Cipitelli, Márcio Costa; Chouin-Carneiro, Thais; Faria, Nieli Rodrigues Costa; Nogueira, Rita Maria Ribeiro; de Bruycker-Nogueira, Fernanda; dos Santos, Flavia Barreto

    2017-01-01

    Background: Chikungunya virus (CHIKV) is an arbovirus that causes an acute febrile syndrome with a severe and debilitating arthralgia. In Brazil, the Asian and East-Central South African (ECSA) genotypes are circulating in the north and northeast of the country, respectively. In 2015, the first autochthonous cases in Rio de Janeiro, Brazil were reported but until now the circulating strains have not been characterized. Therefore, we aimed here to perform the molecular characterization and phylogenetic analysis of CHIKV strains circulating in the 2016 outbreak occurred in the municipality of Rio de Janeiro. Methods: The cases analyzed in this study were collected at a private Hospital, from April 2016 to May 2016, during the chikungunya outbreak in Rio de Janeiro, Brazil. All cases were submitted to the Real Time RT-PCR for CHIKV genome detection and to anti-CHIKV IgM ELISA. Chikungunya infection was laboratorially confirmed by at least one diagnostic method and, randomly selected positive cases (n=10), were partially sequenced (CHIKV E1 gene) and analyzed. Results: The results showed that all the samples grouped in ECSA genotype branch and the molecular characterization of the fragment did not reveal the A226V mutation in the Rio de Janeiro strains analyzed, but a K211T amino acid substitution was observed for the first time in all samples and a V156A substitution in two of ten samples. Conclusions: Phylogenetic analysis and molecular characterization reveals the circulation of the ECSA genotype of CHIKV in the city of Rio de Janeiro, Brazil and two amino acids substitutions (K211T and V156A) exclusive to the CHIKV strains obtained during the 2016 epidemic, were reported. PMID:28286701

  5. Genotypic diversity, pathogenic potential and the resistance profile of Salmonella Typhimurium strains isolated from humans and food from 1983 to 2013 in Brazil.

    Science.gov (United States)

    Almeida, Fernanda; Medeiros, Marta Inês Cazentini; Rodrigues, Dália dos Prazeres; Falcão, Juliana Pfrimer

    2015-11-01

    Salmonella enterica subsp. enterica serovar Typhimurium is one of the leading serovars that causes salmonellosis worldwide. However, few studies have molecularly characterized S. Typhimurium strains in Brazil. In this study, we genotyped 92 S. Typhimurium strains isolated from humans (43) and food (49) between 1983 and 2013 in Brazil using PFGE, multiple-locus variable number of tandem repeats analysis (MLVA) and enterobacterial repetitive intergenic consensus PCR (ERIC-PCR). Moreover, we assessed the frequency of 12 virulence markers by PCR and the resistance profile against 12 antimicrobials. More than 85.8% of the strains studied carried 11 of the virulence markers or more. Thirty-three strains (25%) were multidrug resistant (MDR). The 92 S. Typhimurium studied were grouped by PFGE as PFGE-A, PFGE-B1 and PFGE-B2; by MLVA as MLVA-A, MLVA-B1 and MLVA-B2; and, finally, by ERIC-PCR as ERIC-A and ERIC-B. The strains isolated from humans before the mid-1990s were allocated to all clusters. The strains isolated from humans after the mid-1990s were distributed in the PFGE-B1, MLVA-B1, MLVA-B2 and ERIC-A clusters. The strains isolated from food were distributed in all clusters, except in PFGE-B2. All typing results suggested that the S. Typhimurium strains of human clinical origin isolated before the mid-1990s were genetically more diverse, which might indicate the selection of a more adapted S. Typhimurium subtype after Salmonella Enteritidis became the most prevalent serovar in Brazil. Regarding strains isolated from food, the results suggest the current circulation of more than one subtype. Furthermore, the high frequency of virulence genes and the presence of MDR strains reinforces their potential hazard for humans and the risk of their presence in foods in Brazil.

  6. Distribution of Candida albicans genotypes among family members

    Science.gov (United States)

    Mehta, S. K.; Stevens, D. A.; Mishra, S. K.; Feroze, F.; Pierson, D. L.

    1999-01-01

    Thirty-three families (71 subjects) were screened for the presence of Candida albicans in mouthwash or stool specimens; 12 families (28 subjects) were culture-positive for this yeast. An enrichment procedure provided a twofold increase in the recovery of C. albicans from mouthwash specimens. Nine of the twelve culture-positive families had two positive members each, two families had three positive members each, and one family had four positive members. Genetic profiles were obtained by three methods: pulsed-field gel electrophoresis; restriction endonuclease analysis, and random amplification of polymorphic DNA analysis. DNA fingerprinting of C. albicans isolated from one body site three consecutive times revealed that each of the 12 families carried a distinct genotype. No two families shared the same strain, and two or more members of a family commonly shared the same strain. Intrafamily genotypic identity (i.e., each member within the family harbored the same strain) was demonstrated in six families. Genotypes of isolates from husband and wife differed from one another in five families. All three methods were satisfactory in determining genotypes; however, we concluded that restriction endonuclease analysis provided adequate resolving power.

  7. KIR genotype distribution among Lebanese patients with Hodgkin's lymphoma

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    Rouba Hoteit

    2015-06-01

    Conclusion: In this first study from the Mediterranean region, KIR genotype does not seem to be associated with Hodgkin's lymphoma. Further clinical and translational research is needed to rule out the protective or predisposing role of KIR genes in this important clinical entity.

  8. Distribution and heterogeneity of hepatitis C genotypes in hepatitis patients in Cameroon.

    Science.gov (United States)

    Pasquier, Christophe; Njouom, Richard; Ayouba, Ahidjo; Dubois, Martine; Sartre, Michèle Tagni; Vessière, Aurelia; Timba, Isabelle; Thonnon, Jocelyn; Izopet, Jacques; Nerrienet, Eric

    2005-11-01

    Hepatitis C virus infects humans world-wide. The virus genome varies greatly and it has several genotypes. HCV infection is highly prevalent in Central Africa and Cameroon. Initial studies on the genetic variability of HCV showed infection with HCV genotypes 1, 2, and 4. We have now sequenced the NS5b and E2 regions of 156 HCV isolates collected from patients presenting for diagnosis in Yaounde and used the data to describe the distribution of HCV genotypes and subtypes in patients with hepatitis in Cameroon. Genotype 1 was more frequent than Genotypes 4 and 2. Genotypes 1 and 4 were highly heterogeneous, containing many subtypes described previously (1b, 1c, 1e, 1h, 1l, 4f, 4t, 4p, 4k) and unsubtyped groups. There was a systematic phylogenetic concordance between NS5b and E2 sequence clustering. The Genotype 2 sequences did not vary. Neither subject age nor gender influenced HCV distribution. HCV Genotypes 1 and 4 are very heterogeneous in Cameroon, perhaps due to ancient infections. The homogeneity of HCV Genotype 2 indicates its more recent introduction from western Africa.

  9. Distribution of HBV genotypes among HBV carriers in Benin:phylogenetic analysis and virological characteristics of HBV genotype E

    Institute of Scientific and Technical Information of China (English)

    Kei Fujiwara; Atsushi Ozasa; Yuko Sakamoto; Isao Arita; Ahmed El-Gohary; Agossou Benoit; Sophie I Ogoundele-Akplogan; Namiko Yoshihara; Ryuzo Ueda; Masashi Mizokami; Yasuhito Tanaka; Etsuro Orito; Tomoyoshi Ohno; Takanobu Kato; Kanji Sugihara; Izumi Hasegawa; Mayumi Sakurai; Kiyoaki Ito

    2005-01-01

    AIM: To determine the distribution of Hepatitis B virus (HBV) genotypes in Benin, and to clarify the virological characteristics of the dominant genotype.METHODS: Among 500 blood donors in Benin, 21 HBsAg-positive donors were enrolled in the study. HBV genotypes were determined by enzyme immunoassay and restriction fragment length polymorphism. Complete genome sequences were determined by PCR and direct sequencing.RESULTS: HBV genotype E (HBV/E) was detected in 20/21 (95.2%), and HBV/A in 1/21 (4.8%). From the age-specific prevalence of HBeAg to anti-HBe seroconversion (SC) in 19 HBV/E subjects, SC was estimated to occur frequently in late teens in HBV/E.The comparison of four complete HBV/E genomes from HBeAg-positive subjects in this study and five HBV/E sequences recruited from the database revealed that HBV/E was distributed throughout West Africa with very low genetic divers ity (nucleotide homology 96.7-99.2%).Based on the sequences in the basic core promoter (BCP)to precore region of the nine HBV/E isolates compared to those of the other genotypes, a nucleotide substitution in the BCP, G1757A, was observed in HBV/E.CONCLUSION: HBV/E is predominant in the Republic of Benin, and SC is estimated to occur in late teens in HBV/E. The specific nucleotide substitution G1757A in BCP, which might influence the virological characteristics,is observed in HBV/E.

  10. Genotyping of Cryptosporidium spp. from free-living wild birds from Brazil.

    Science.gov (United States)

    Sevá, Anaiá da Paixão; Funada, Mikaela Renata; Richtzenhain, Leonardo; Guimarães, Marta Brito; Souza, Sheila de Oliveira; Allegretti, Luciana; Sinhorini, Juliana Anaya; Duarte, Vanessa Vertematti; Soares, Rodrigo Martins

    2011-01-10

    In wild and domestic birds, cryptosporidiosis is often associated with infections by Cryptosporidium galli, Cryptosporidium baileyi and Cryptosporidium meleagridis. In addition to these species, a number of avian Cryptosporidium species yet to be fully characterized are commonly found among exotic and wild avian isolates. The present study aimed to detect and identify samples of Cryptosporidium spp. from free-living wild birds, in order to contribute to the knowledge of the variability of this parasite in the free-living population of Brazil. Stool samples were collected from 242 birds, with the following proportions of individuals: 50 Emberizidae (20.7%), 112 Psittacidae (46.3%), 44 Cardinalidae (18.2%), 12 Turdidae (5.0%), eight Ramphastidae (3.3%), seven Icteridae (2.9%), three Estrilididae (1.2%), two Contigidae (0.8%), two Thraupidae (0.8%) and two Fringilidae (0.8%). Among the 242 fecal samples from wild birds, 16 (6.6%) were positive for the presence of oocysts of Cryptosporidium. Molecular characterization of the 16 samples of Cryptosporidium, were performed with phylogenetic reconstructions employing 292 positions of 18S rDNA. None of the samples of birds was characterized as C. meleagridis. C. galli was identified in one rufous-bellied thrush (Turdus rufiventris), five green-winged saltators (Saltator similis), one slate-coloured seedeater (Sporophila schistacea), one goldfinch (Carduelis carduelis) and three saffron finches (Sicalis flaveola). One goldfinch isolate, one buffy-fronted seedeater (Sporophila frontalis), one red-cowled cardinal (Paroaria dominicana) and one other saffron finch (S. flaveola) were identified as C. baileyi. Avian genotype II was found in an isolate from a white-eyed parakeet (Aratinga leucophthalma). Clinical symptoms of cryptosporidiosis in birds have already been described and the number of wild birds which were shedding parasites was high. Therefore, further epidemiological research and disease surveillance of birds in the

  11. Distribution of hepatitis C virus genotypes in volunteer blood donors from Chengdu, China.

    Science.gov (United States)

    Gong, Tianxiang; Zhao, Xin; Luo, Yijia; Hong, Ying; Li, Shuping; Fu, Xuemei

    2016-07-01

    Hepatitis C virus (HCV) is a significant pathogen of global concern. The virus is usually spread through blood contact, such as transfusion, hemodialysis and injection of illegal drugs. HCV genotypes have a geographic distribution in different areas. In this paper, we focus on the distribution of HCV genotypes from volunteer blood donors in Chengdu. The prevalence of genotypes was analyzed using phylogenetic analysis. Phylogenetic trees were constructed based on the HCV core and NS5B regions from 313 sequences. HCV sequences were classified into six subtypes, and HCV genotypes were determined with the following results: 1b in 283, 2a in 14, 3b in seven, 3a in three, 6a in five and 6u in one. Subtype 1b was the most common and accounted for approximately 90.41 % (283/313), and a virus of subtype 6u was isolated for the first time from the Chengdu area. Genotypes 4 and 5 were not detected.

  12. The Evolving Genotypic Profile of HIV-1 Mutations Related to Antiretroviral Treatment in the North Region of Brazil.

    Science.gov (United States)

    Lopes, Carmen Andréa F; Soares, Marcelo A; Falci, Diego R; Sprinz, Eduardo

    2015-01-01

    HIV related mutations can be associated with decreased susceptibility to antiretrovirals and treatment failures. There is scarce information about HIV mutations in persons failing HIV treatment in North of Brazil. Our aim was to evaluate evolution of HIV subtypes and mutations patterns related to antiretroviral therapy in this region. We investigated HIV resistance profile in adults failing antiretroviral regimen in Northern Brazil from January, 2004, through December, 2013. Genotype data was evaluated through Stanford University algorithm. There were 377 genotypes from different individuals to evaluate. Resistance mutations were similar to worldwide reports and related to antiretroviral exposure. Most prevalent mutations in the reverse transcriptase gene were M184V (80.1%) and K130N (40.6%). Thymidine associated mutations were more frequent in multiexperienced patients. Most common protease mutations were M46I, V82A, I54V, L90M, I84V, M46L, and L76V. Subtype B was the most prevalent (90.7%). There were differences between subtypes B and non-B mutations. We documented for the first time subtypes and patterns of HIV associated mutations in Northern Brazil. A1 subtype was identified for the first time in this area. Depending on drug regimen and how experienced the patient is, an empirical switch of a failing antiretroviral treatment could be a reasonable option.

  13. The Evolving Genotypic Profile of HIV-1 Mutations Related to Antiretroviral Treatment in the North Region of Brazil

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    Carmen Andréa F. Lopes

    2015-01-01

    Full Text Available HIV related mutations can be associated with decreased susceptibility to antiretrovirals and treatment failures. There is scarce information about HIV mutations in persons failing HIV treatment in North of Brazil. Our aim was to evaluate evolution of HIV subtypes and mutations patterns related to antiretroviral therapy in this region. We investigated HIV resistance profile in adults failing antiretroviral regimen in Northern Brazil from January, 2004, through December, 2013. Genotype data was evaluated through Stanford University algorithm. There were 377 genotypes from different individuals to evaluate. Resistance mutations were similar to worldwide reports and related to antiretroviral exposure. Most prevalent mutations in the reverse transcriptase gene were M184V (80.1% and K130N (40.6%. Thymidine associated mutations were more frequent in multiexperienced patients. Most common protease mutations were M46I, V82A, I54V, L90M, I84V, M46L, and L76V. Subtype B was the most prevalent (90.7%. There were differences between subtypes B and non-B mutations. We documented for the first time subtypes and patterns of HIV associated mutations in Northern Brazil. A1 subtype was identified for the first time in this area. Depending on drug regimen and how experienced the patient is, an empirical switch of a failing antiretroviral treatment could be a reasonable option.

  14. Clinical characteristics and distribution of hepatitis B virus genotypes in Guangxi Zhuang population

    Institute of Scientific and Technical Information of China (English)

    Zhong-Min Huang; Qi-Wen Huang; Ya-Qin Qin; Chun-He Huang; Hou-Ji Qin; Yiao-Nan Zhou; Xiang Xu; Chun-Lei Lu

    2005-01-01

    AIM: To investigate the distribution of HBV genotypes and their YMDD mutations in Guangxi Zhuang population, China, and to study the relationship between HBV genotypes and clinical types of HB, ALT, HBV DNA, HBe system as well as the curative effect of Lamivudine (LAM) on hepatitis B.METHODS: A total of 156 cases were randomly chosen as study subjects from 317 patients with chronic hepatitis B (CHB). HBV genotypes were determined by PCR-microcosmic nucleic acid cross-ELISA. YMDD mutations were detected by microcosmic nucleic acid cross-nucleic acid quantitative determination. HBV DNA was detected by fluorescence ratio PCR analysis.LAM was given to 81 cases and its curative effect was observed by measuring ALT, HBV DNA load, HBeAg, and HBeAg/HBeAb conversion rate.RESULTS: HBV genotypes B, C, D, and non-classified genotypes were found in Guangxi Zhuang population.accounting for 25.6%, 47.4%, 58.3%, and 16.0%,respectively. Seventy-four cases were CD-, CB-, BD-mixed genotypes (47.7%). Forty-six (29.5%) cases had YMDD mutations. Genotype B was mostly found in mild and moderate CHB patients. Genotypes C, D and mixed genotype mostly occurred in severe CHB cases.Genotypes D and CD HBV-infected patients had higher ALT and HBV DNA than patients with other types of HBV infection. There was no significant difference among the genotypes in YMDD mutations, clinical types, ALT and HBV DNA level. Non-classified types geno had a significantly lower positive rate of HBeAg than other genotypes (x2= 12.841, P<0.05). There was no significant difference in ALT recovery rate, HBV DNA load, HBeAg,and HBeAg/HBeAb conversion rate, 48 wk after LAM treatment between groups of genotypes D, CD, and nonclassified type.CONCLUSION: Genotypes B, C, and D, non-classified and mixed genotype of HBV are identified in the Guangxi Zhuang population. Variations in genotypes are associated with clinical severity and serum ALT levels, but not with YMDD mutation or HBV DNA load.Therapeutic effects of LAM

  15. HCV genotype distribution and possible transmission risks in Lahore, Pakistan

    Institute of Scientific and Technical Information of China (English)

    Waqar; Ahmad; Bushra; Ijaz; Fouzia; Tahir; Javed; Shah; Jahan; Imran; Shahid; Fawad; Mumtaz; Khan; Sajida; Hassan

    2010-01-01

    AIM: To investigate the prevalence of hepatitis C virus (HCV) genotypes and their association with possible transmission routes in the general population of Lahore, as the data exclusively related to this city is limited. METHODS: Complete data regarding patient's history, possible route of infection and biochemical tests was collected from the public hospital for 1364 patients. SPSS version 16 windows software was used for data analysis by univariate and multivariate techniques. RESULTS: Age range ≤ 40 yea...

  16. Distribution of Hepatitis C virus genotypes in city of Mashhad, North-east of Iran

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    M Rastin

    2014-01-01

    Full Text Available Purpose: Six major hepatitis C virus genotypes have been characterised, which vary in their geographical distribution. The prevalence of hepatitis C virus (HCV in an area is not constant, and depends on the changes in route of infection, which may change over time. In this study, the distribution of HCV genotypes in Mashhad, the capital of Razavi Khorasan province in north-east of Iran was investigated. Mashhad is a holy city of Shiate Moslems, which attracts more than 20 million tourists and pilgrims every year. Materials and Methods: Two hundred and seventy-eight HCV infected subjects (227 males and 51 females were included in this study. HCV genotypes were analysed by type specific reverse transcriptase polymerase chain reaction (RT-PCR. Results: Genotype 3a was detected in 49.6%, 1a in 36.3%, 1b in 12.6% and 2a in 0.4%. Two HCV genotypes were detected in 1.1% cases; 1a +3a in 1%, 3a + 1b in 0.4%. Genotypes 2b and 3b were not detected in any samples. Conclusion: We demonstrated that despite the previous reports on the frequency of HCV genotypes in Iran, 3a is the predominant genotype in Mashhad.

  17. Prevalence and genotyping of hepatitis C virus in blood donors in the state of Pará, Northern Brazil

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    Aldemir B Oliveira-Filho

    2010-02-01

    Full Text Available Given the scarcity of epidemiological information on hepatitis C virus (HCV infection in Northern Brazil, we determined the prevalence and genotypic frequency in blood donors in the state of Pará (PA. Blood samples from all of the blood donors at the Fundação HEMOPA (blood bank of PA from 2004-2006 were screened for the presence of antibodies to anti-HCV and samples seroreactive to anti-HCV were further tested for HCV RNA using real-time PCR. In total, 116 HCV-RNA samples were genotyped, based on maximum likelihood phylogenetic analyses, using BioEdit, Modelgenerator, PHYML and FigTree software. The population consisted of 242,726 volunteers who donated blood from 2004-2006; the most common subgroup was males between the ages of 18-29 years old (37.30%. Within the whole group, 1,112 blood donors (0.46% had indeterminate or positive serology; among these, 28.78% were males whose ages ranged from 18-29 years. A diagnosis of chronic HCV infection was confirmed for 304 donors (60.20% males; 66.45% were 30-49 years old, resulting in a prevalence of HCV RNA in 0.13% of the samples (304 of 242,726. HCV genotyping revealed a high frequency of genotype 1 (108/116 followed by genotype 3 (8/116. This study found HCV infection to be relatively infrequent in PA; genotype 1 was most commonly isolated. This information can help guide prevention and control policies aimed at efficient diagnosis and control measures.

  18. Prevalence and genotype distribution of rotaviruses in children with gastroenteritis in Rize province

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    Selim Dereci

    2015-07-01

    Full Text Available Determination of the distribution of rotavirus genotypes is essential for understanding the epidemiology of this virus responsible for nearly half a million of deaths in patients with gastroenteritis worldwide. In the present study, we aimed to genotype the rotavirus strains isolated from diarrheal stool samples in children under 5 years old. A total of 1297 fecal samples were collected, and rotavirus antigen was detected in 73 of these samples. Antigen-positive samples were transferred to the Public Health Agency of Turkey, Molecular Microbiology Research Laboratory, and were tested for determination of genotypes G and P using semi-nested multiplex polymerase chain reaction method performed with consensus- and genotype-specific primers. Twelve specimens were found to be negative for rotavirus in genotyping method. All the positive-strains were in G1-4, G8-9, P(4, P(8, and P(9 genotypes. The most frequent GP genotype combinations were found to be G9P(8 in 21 strains (34.4%, G2P(4 in 14 strains (23.0%, and G1P(8 in 12 strains (19.7%. We found 10 distinct genotypes amongst a total of 61 strains. Among the strains isolated and genotyped in our study, 90.2% (55/61 and 67.2% (41/61 have already been included in the two existing commercial vaccines. In conclusion, these findings implicate the necessity of development of region-specific vaccines after evaluation of the local genotype distribution. Further studies on the large number of rotavirus strains would contribute to this process. 

  19. Prevalence and genotype distribution of rotaviruses in children with gastroenteritis in Rize province.

    Science.gov (United States)

    Dereci, Selim; Çopur Çiçek, Ayşegül; Savaş Acar, Sümeyra; Bakkaloğlu, Zekiye; Özkasap, Serdar; Kanber, Kadri; Hacisalihoğlu, Şadan; Albayrak, Yücehan; Durmaz, Rıza

    2015-07-09

    Determination of the distribution of rotavirus genotypes is essential for understanding the epidemiology of this virus responsible for nearly half a million of deaths in patients with gastroenteritis worldwide. In the present study, we aimed to genotype the rotavirus strains isolated from diarrheal stool samples in children under 5 years old. A total of 1297 fecal samples were collected, and rotavirus antigen was detected in 73 of these samples. Antigen-positive samples were transferred to the Public Health Agency of Turkey, Molecular Microbiology Research Laboratory, and were tested for determination of genotypes G and P using semi-nested multiplex polymerase chain reaction method performed with consensus- and genotype-specific primers. Twelve specimens were found to be negative for rotavirus in genotyping method. All the positive-strains were in G1-4, G8-9, P(4), P(8), and P(9) genotypes. The most frequent GP genotype combinations were found to be G9P(8) in 21 strains (34.4%), G2P(4) in 14 strains (23.0%), and G1P(8) in 12 strains (19.7%). We found 10 distinct genotypes amongst a total of 61 strains. Among the strains isolated and genotyped in our study, 90.2% (55/61) and 67.2% (41/61) have already been included in the two existing commercial vaccines. In conclusion, these findings implicate the necessity of development of region-specific vaccines after evaluation of the local genotype distribution. Further studies on the large number of rotavirus strains would contribute to this process.

  20. Genotypes of Cryptococcus neoformans and Cryptococcus gattii as agents of endemic cryptococcosis in Teresina, Piauí (northeastern Brazil

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    Liline Maria Soares Martins

    2011-09-01

    Full Text Available Throughout Brazil, Cryptococcus neoformans is the cause of cryptococcosis, whereas Cryptococcus gattii is endemic to the northern and northeastern states. In this study, the molecular types of 63 cryptococcal isolates recovered from the cerebrospinal fluid of meningitis patients diagnosed between 2008-2010 in Teresina, Piauí, Brazil, were analysed. Out of the 63 patients, 37 (58.7% were human immunodeficiency virus (HIV-positive and 26 (41.3% were HIV-negative. URA5-restriction fragment length polymorphism analysis identified 37/63 (58.7% isolates as the C. neoformans VNI genotype, predominantly in HIV-positive patients (32/37, 86.5%, and 24/63 (38.1% as the C. gattii VGII genotype, mostly in HIV-negative patients (21/26, 80.8%. The occurrence of C. gattii VGII in six apparently healthy children and in seven adolescents/young adults in this region reaffirms the endemic occurrence of C. gattii VGII-induced primary cryptococcosis and early cryptococcal infection. Lethality occurred in 18/37 (48.6% of the HIV-positive subjects and in 13/26 (50% of the HIV-negative patients. Our results provide new information on the molecular epidemiology of C. neoformans and C. gattii in Brazilian endemic areas.

  1. Overview of genotypic and clinical profiles of human immunodeficiency virus type 1-infected children in Rio de Janeiro, Brazil

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    Elizabeth S. Machado

    2004-12-01

    Full Text Available Although mother-to-child HIV transmission prevention has slowed down pediatric HIV infection in developed countries, large numbers of infants still become infected in developing nations. Data on pediatric HIV infection is however largely scarce. In this study, we have overviewed clinical, laboratory and genotypic data from a large cohort of HIV-infected infants regularly followed at two pediatric HIV outpatient clinics in Rio de Janeiro, Brazil. Children on antiretroviral therapy, as well as drug-naïve, newly diagnosed infants were analyzed. Prevalence of drug resistance mutations, as well as immunological and virological responses to therapy were evaluated. Additionally, HIV-1 subtype frequencies and their distribution over the course of the epidemic were studied. We have found a high prevalence of mutations among ARV-experienced children, whereas mutations were absent in the drug-naïve group. Despite the high levels of resistance among treated infants, an important improvement of their immunological status was observed. HIV-1 subtype distribution followed the trends of the adult population, with the appearance of non-B subtypes and recombinant forms after 1990. To our knowledge, this is the largest pediatric cohort ever analyzed in Brazil, and the data provided is of paramount importance to a better understanding of HIV/AIDS evolution in pediatric settings.Embora os protocolos de prevenção da transmissão materno-infantil do HIV tenham diminuído a infecção pediátrica pelo HIV nos países desenvolvidos, um grande número de crianças ainda se infectam nas nações em desenvolvimento. Dados disponíveis de infecção pediátrica são entretanto ainda escassos. Neste trabalho, nós conduzimos um levantamento clínico, laboratorial e genotípico de um grande coorte de crianças infectadas pelo HIV em acompanhamento em dois grandes centros de atendimento de HIV/AIDS pediátrica do Rio de Janeiro. Crianças em tratamento anti-retroviral, bem

  2. The Distribution of Hepatitis C Virus Genotypes in Patients with Chronic Hepatitis C Infection

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    Sevin Kırdar

    2015-12-01

    Full Text Available Objective: Hepatitis C virus (HCV infection represents a major public health problem worldwide. HCV can cause chronic hepatitis infection which may ultimately result in cirrhosis and hepatocellular carcinoma. Seven major genotypes and more than 100 subtypes of HCV are shown by sequence analysis. Genotype 1 is associated with more severity of liver disease than genotypes 2 and 3 and sustained response totreatment is known to be less. In this study, we aimed to determine the HCV genotype distribution in chronic hepatitis C patients. Materials and Methods: A total of 50 patients with chronic HCV infection who attended the Microbiology Laboratory at Adnan Menderes University Hospital between August 2007 and December 2010 found to be positive for anti-HCV and HCV-RNA were included in the study. Anti-HCV testing was performed using microparticle Enzyme-Linked immunosorbent assay test kit (Murex Anti-HCV version 4, UK with autoanalyser (Grifols Triturus, Spain. The quantification of serum HCV-RNA was carried out by a realtime polymerase chain reaction method with two different systems (Cobas TaqMan HCV, Roche Diagnostics, Germany and RotorGene 6000,Corbett Research, USA. HCV genotype analysis was performed by using a kit (HCV-TS; AB Analitica, Italy based on the reverse hybridization of 5’-untranslated region and amplified products with genotype-specific probes. Results: The mean age of the 50 chronic hepatitis C patients [27 (54% female, and 23 (46% male] was 57.1±14.3 years. Genotype 1b was found in 36 (72% subjects, genotype 1a in nine (18%, genotype 2b in one (2%, genotype 3 in one (2%, and genotype 1a/1b was found in three (6% patients. No statistically significant difference was detected in HCV-RNA quantities and anti-HCV index between HCV genotypes (p>0.05. Conclusion: Compatible with the previous data obtained in Turkey, genotype 1b was found to be the most common HCV genotype in patients with chronic hepatitis C followed in our hospital.

  3. Genotyping of human parvovirus B19 in clinical samples from Brazil and Paraguay using heteroduplex mobility assay, single-stranded conformation polymorphism and nucleotide sequencing.

    Science.gov (United States)

    Mendonça, Marcos César Lima de; Ferreira, Ana Maria de Amorim; Santos, Marta Gonçalves Matos dos; Oviedo, Elva Cristina; Bello, Maria Sônia Dal; Siqueira, Marilda Mendonça; Maceira, Juan Manuel Piñeiro; von Hubinger, Maria Genoveva; Couceiro, José Nelson dos Santos Silva

    2011-06-01

    Heteroduplex mobility assay, single-stranded conformation polymorphism and nucleotide sequencing were utilised to genotype human parvovirus B19 samples from Brazil and Paraguay. Ninety-seven serum samples were collected from individuals presenting with abortion or erythema infectiosum, arthropathies, severe anaemia and transient aplastic crisis; two additional skin samples were collected by biopsy. After the procedure, all clinical samples were classified as genotype 1.

  4. Genotyping of human parvovirus B19 in clinical samples from Brazil and Paraguay using heteroduplex mobility assay, single-stranded conformation polymorphism and nucleotide sequencing

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    Marcos César Lima de Mendonça

    2011-06-01

    Full Text Available Heteroduplex mobility assay, single-stranded conformation polymorphism and nucleotide sequencing were utilised to genotype human parvovirus B19 samples from Brazil and Paraguay. Ninety-seven serum samples were collected from individuals presenting with abortion or erythema infectiosum, arthropathies, severe anaemia and transient aplastic crisis; two additional skin samples were collected by biopsy. After the procedure, all clinical samples were classified as genotype 1.

  5. Genotypic distribution of hepatitis C virus in Thailand and Southeast Asia.

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    Rujipat Wasitthankasem

    Full Text Available The majority of hepatitis C virus (HCV infection results in chronic infection, which can lead to liver cirrhosis and hepatocellular carcinoma. Global burden of hepatitis C virus (HCV is estimated at 150 million individuals, or 3% of the world's population. The distribution of the seven major genotypes of HCV varies with geographical regions. Since Asia has a high incidence of HCV, we assessed the distribution of HCV genotypes in Thailand and Southeast Asia. From 588 HCV-positive samples obtained throughout Thailand, we characterized the HCV 5' untranslated region, Core, and NS5B regions by nested PCR. Nucleotide sequences obtained from both the Core and NS5B of these isolates were subjected to phylogenetic analysis, and genotypes were assigned using published reference genotypes. Results were compared to the epidemiological data of HCV genotypes identified within Southeast Asian. Among the HCV subtypes characterized in the Thai samples, subtype 3a was the most predominant (36.4%, followed by 1a (19.9%, 1b (12.6%, 3b (9.7% and 2a (0.5%. While genotype 1 was prevalent throughout Thailand (27-36%, genotype 3 was more common in the south. Genotype 6 (20.9% constituted subtype 6f (7.8%, 6n (7.7%, 6i (3.4%, 6j and 6m (0.7% each, 6c (0.3%, 6v and 6xa (0.2% each and its prevalence was significantly lower in southern Thailand compared to the north and northeast (p = 0.027 and p = 0.030, respectively. Within Southeast Asia, high prevalence of genotype 6 occurred in northern countries such as Myanmar, Laos, and Vietnam, while genotype 3 was prevalent in Thailand and Malaysia. Island nations of Singapore, Indonesia and Philippines demonstrated prevalence of genotype 1. This study further provides regional HCV genotype information that may be useful in fostering sound public health policy and tracking future patterns of HCV spread.

  6. HPV genotype distribution in older Danish women undergoing surgery due to cervical cancer

    DEFF Research Database (Denmark)

    Hammer, Anne; Mejlgaard, Else; Gravitt, Patti;

    2015-01-01

    INTRODUCTION: The prevalence of human papillomavirus (HPV)16/18 in cervical cancer may decrease with age. This study aimed to describe the HPV genotype distribution in Danish women aged 55 years or older with cervical cancer. MATERIAL AND METHODS: In this cross-sectional study we identified 153...... cases of cervical cancer diagnosed at Aarhus University Hospital, Denmark (1990-2012) and Copenhagen University Hospital Herlev, Denmark (2007-2012). All women had surgery to treat the disease. HPV genotyping was performed on cervical cancer tissue using the INNO LiPA HPV genotyping extra (Fujirebio......, Belgium) at the Department of Pathology, Aarhus University Hospital, Denmark. The main outcome was to estimate the age-specific prevalence of high-risk HPV genotypes included in the bivalent, the quadrivalent, and the nonavalent vaccine. RESULTS: Of 121 cases of cervical cancer included in this study, 113...

  7. Temporal distribution of tuberculosis in the State of Amazonas, Brazil

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    Marlucia da Silva Garrido

    2015-06-01

    Full Text Available Tuberculosis (TB is one of the infectious diseases that contributes most to the morbidity and mortality of millions of people worldwide. Brazil is one of 22 countries that accounts for 80% of the tuberculosis global burden. The highest incidence rates in Brazil occur in the States of Amazonas and Rio de Janeiro. The aim of this study was to describe the temporal distribution of TB in the State of Amazonas. Between 2001 and 2011, 28,198 cases of tuberculosis were reported in Amazonas, distributed among 62 municipalities, with the capital Manaus reporting the highest (68.7% concentration of cases. Tuberculosis was more prevalent among males (59.3% aged 15 to 34 years old (45.5%, whose race/color was predominantly pardo (64.7% and who had pulmonary TB (84.3%. During this period, 81 cases of multidrug-resistant TB were registered, of which the highest concentration was reported from 2008 onward (p = 0.002. The municipalities with the largest numbers of indigenous individuals affected were São Gabriel da Cachoeira (93%, Itamarati (78.1%, and Santa Isabel do Rio Negro (70.1%. The future outlook for this region includes strengthening the TB control at the primary care level, by expanding diagnostic capabilities, access to treatment, research projects developed in collaboration with the Dr. Heitor Vieira Dourado Tropical Medicine Foundation .;Fundação de Medicina Tropical Dr. Heitor Vieira Dourado (FMT-HVD.; and financing institutions, such as the project for the expansion of the Clinical Research Center and the creation of a hospital ward for individuals with transmissible respiratory diseases, including TB.

  8. HCV Antibody Response and Genotype Distribution in Different Areas and Races of China

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    Leili Jia, Jiyun Yu, Jinliang Yang, Hongbin Song, Xuelin Liu, Yong Wang, Yuanyong Xu, Chuanfu Zhang, Yanwei Zhong, Qiao Li

    2009-01-01

    Full Text Available Hepatitis C virus (HCV heterogeneity accounts for the failure of effective vaccine development and the lack of successful anti-viral therapy in some patients. Little is known about the immune response to HCV peptides and the region or race specific genotypes in China. The objective of this study was to characterize HCV antibody immune response to HCV peptides and HCV genotypes in different regions and races of China. A total of 363 serum samples were collected from HCV carriers in 6 regions in China. The immune response to HCV peptides was evaluated by ELISA. HCV genotypes were examined using nested RT-PCR. We found that the anti-HCV antibody neutralization rates were significantly different among the serum samples from different areas or from different races in the same area. For samples from Tibet and Sinkiang, the rates of neutralization by HCV peptides were only 3.2% and 30.8%, respectively. The genotypes of samples from Tibet and Sinkiang were apparently heterogeneic and included type I, II, III and multiple types (I/II/III, I/II, I/III, II/III. One specific sample with multiple-genotype (I/II/III HCV infection was found to consist of type I, II, III, II/III and an unclassified genotype. These studies indicate that the anti-HCV antibody immune response to HCV peptides varied across regions and among races. The distribution of HCV genotypes among Tibetans in Tibet and Uighurs in Sinkiang was different from that in the inner areas of China. In addition, a “master” genotype, type II, was found to exist in HCV infection with multiple HCV genotypes.

  9. HCV antibody response and genotype distribution in different areas and races of China.

    Science.gov (United States)

    Jia, Leili; Yu, Jiyun; Yang, Jinliang; Song, Hongbin; Liu, Xuelin; Wang, Yong; Xu, Yuanyong; Zhang, Chuanfu; Zhong, Yanwei; Li, Qiao

    2009-06-13

    Hepatitis C virus (HCV) heterogeneity accounts for the failure of effective vaccine development and the lack of successful anti-viral therapy in some patients. Little is known about the immune response to HCV peptides and the region or race specific genotypes in China. The objective of this study was to characterize HCV antibody immune response to HCV peptides and HCV genotypes in different regions and races of China. A total of 363 serum samples were collected from HCV carriers in 6 regions in China. The immune response to HCV peptides was evaluated by ELISA. HCV genotypes were examined using nested RT-PCR. We found that the anti-HCV antibody neutralization rates were significantly different among the serum samples from different areas or from different races in the same area. For samples from Tibet and Sinkiang, the rates of neutralization by HCV peptides were only 3.2% and 30.8%, respectively. The genotypes of samples from Tibet and Sinkiang were apparently heterogeneic and included type I, II, III and multiple types (I/II/III, I/II, I/III, II/III). One specific sample with multiple-genotype (I/II/III) HCV infection was found to consist of type I, II, III, II/III and an unclassified genotype. These studies indicate that the anti-HCV antibody immune response to HCV peptides varied across regions and among races. The distribution of HCV genotypes among Tibetans in Tibet and Uighurs in Sinkiang was different from that in the inner areas of China. In addition, a "master" genotype, type II, was found to exist in HCV infection with multiple HCV genotypes.

  10. Distribution and diversity of hepatitis B virus genotypes in Yunnan, China.

    Science.gov (United States)

    Wang, Binghui; Feng, Yue; Li, Zheng; Duan, Haiping; Zhao, Ting; Zhang, Amei; Liu, Li; Baloch, Zulqarnain; Xia, Xueshan

    2014-10-01

    Hepatitis B virus (HBV) is one of the most prevalent pathogens in the world, and infection with this virus is a serious threat for public health. Yunnan is considered as an important endemic center for blood-borne viruses such as human immunodeficiency virus and hepatitis C virus, in China. However, the distribution and diversity of HBV subgenotypes remain unclear in Yunnan province. In the current study, HBV positive samples were collected from different prefectures of Yunnan province and their molecular epidemiological characters were determined. Phylogenetic analysis on the pre-S/S gene (865 bps) showed the prevalence of four HBV genotypes, including genotype B (24 cases, 33.3%), genotype C (45 cases, 62.5%), genotype I (two cases, 2.78%) and C/D recombinants (one case, 1.39%). The most prevalent genotypes B and C could be sub classified into subgenotype B2 and C1, C2, C5, and C7, respectively. Clusters of subgenotype B2 and C2 consisted of strains from China and other East Asian countries, while subgenotype C1, C5, and C7 and genotype I formed a cluster together with strains from Southeast Asia. Using Bayesian inference from phylogenetic, HBV genotypes B and C were estimated to have originated in 1860s and 1910s with an evolutionary rate of 3.26 and 8.01 × 10(-4) substitutions/site/year, respectively. These findings indicate that the distribution of HBV genotypes in Yunnan was influenced by strains from the rest of China and the neighboring countries.

  11. Distribution pattern of crustacean ectoparasites of freshwater fish from Brazil

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    Marcos Tavares-Dias

    Full Text Available The purpose of this study was to use the informations relating to parasite crustaceans species that was published over the course of one century (1913 to 2013, in order to search for infestation and distribution patterns among these ectoparasites in Brazilian freshwater fish species. This search was carried out on 445 samples of 119 host fish of 27 families within the orders Characiformes, Perciformes, Clupeiformes, Mugiliformes, Osteoglossiformes, Symbranchiformes, Tetraodontiformes and Siluriformes from various regions of Brazil. We organized different host-parasite systems into matrices grouping species at different taxonomic and infestation levels and according to host parameters. Five families of parasites (Ergasilidae, Argulidae, Lernaeidae, Lernaeopodidae and Cymothoidae distributed into 76 species of 27 genera were analyzed in the host samples, which presented dominance of Ergasilidae species, mainly from the genus Ergasilus. Some crustaceans are host and site-specific, especially in relation to fish in particular habitats and lifestyles (e.g. Perulernaea gamitanae, Anphira branchialis and Riggia paranensis, while other parasites frequently have no preference (e.g. Lernaea cyprinacea and Braga patagonica. We found broadly similar distribution patterns for some crustacean species among the different localities, whereas other species showed well-defined geographical patterns, and these findings were discussed.

  12. Tsallis statistics in the income distribution of Brazil

    Science.gov (United States)

    Soares, Abner D.; Moura, Newton J., Jr.; Ribeiro, Marcelo B.

    2016-07-01

    This paper discusses the empirical evidence of Tsallis statistical functions in the personal income distribution of Brazil. Yearly samples from 1978 to 2014 were linearized by the q-logarithm and straight lines were fitted to the entire range of the income data in all samples, producing a two-parameters-only single function representation of the whole distribution in every year. The results showed that the time evolution of the parameters is periodic and plotting one in terms of the other reveals a cycle mostly clockwise. It was also found that the empirical data oscillate periodically around the fitted straight lines with the amplitude growing as the income values increase. Since the entire income data range can be fitted by a single function, this raises questions on previous results claiming that the income distribution is constituted by a well defined two-classes-base income structure, since such a division in two very distinct income classes might not be an intrinsic property of societies, but a consequence of an a priori fitting-choice procedure that may leave aside possibly important income dynamics at the intermediate levels.

  13. Phenotypic and genotypic characterization of two Toxoplasma gondii isolates in free-range chickens from Uberlândia, Brazil.

    Science.gov (United States)

    Lopes, C S; Franco, P S; Silva, N M; Silva, D A O; Ferro, E A V; Pena, H F J; Soares, R M; Gennari, S M; Mineo, J R

    2016-07-01

    The aim of this study was to determine the seroprevalence of Toxoplasma gondii infection in free-range chickens from Uberlândia, Minas Gerais state, Brazil, and characterize the genotypic and phenotypic features of two isolates of this parasite, considering the importance of these hosts in the epidemiology of toxoplasmosis. Serum samples from 108 free-range chickens were obtained from ten different districts, and submitted to the modified agglutination test (MAT) for the presence of anti-T. gondii antibodies, and brain and heart tissue samples from infected chickens were processed for mouse bioassay. An overall seroprevalence of 71·3% was found and antibody titres ranged from 16 to 4096. After confirmation of seropositivity by mouse bioassay, the determination of the T. gondii genotypes of two isolates was performed by PCR-RFLP, using primers for the following markers: SAG1, SAG2, SAG3, BTUB, GRA6, c22-8, c29-2, L358, PK1, new SAG2, Apico and CS3. These T. gondii isolates, designated TgChBrUD1and TgChBrUD2, were obtained from heart samples of free-range chickens. The TgChBrUD1 isolate belonged to ToxoDB PCR-RFLP genotype 11 and the TgChBrUD2 isolate belonged to ToxoDB PCR-RFLP genotype 6. Both isolates demonstrated high virulence in a rodent model, with the TgChBrUD1 isolate able to induce brain cysts, in accord with its pattern of multiplication rates in human fibroblast culture. Taken together, these results reveal high prevalence of T. gondii infection in free-range chickens throughout Uberlândia, indicating an important degree of oocyst environmental contamination and the existence of considerable risk for T. gondii transmission to humans by consumption of free-range chicken as a food source.

  14. High prevalence of unusual genotypes of Toxoplasma gondii infection in pork meat samples from Erechim, Southern Brazil

    Directory of Open Access Journals (Sweden)

    RN Belfort

    2007-03-01

    Full Text Available Toxoplasmosis is the most common cause of infectious uveitis in Brazil, with a higher frequency in the South of the country. We have collected samples from porcine tongue and diaphragm obtained in both large and small abattoirs and used molecular biological technique to determine the prevalence of infection and RFLP analysis to type the parasites. Seventeen out of 50 (34% samples from the diaphragm and 33 out of 50 (66% samples from the tongue demonstrated a positive PCR reaction for T. gondii and restriction analysis of four of the positive samples revealed that all had a type I genotype at SAG2. However, when other unlinked loci were analyzed, these strains had a type III genotype at markers BTUB, SAG3, and GRA6. One of the strains (8T had a type II allele at SAG3, indicating it has a combination of alleles normally seen in the clonal lineages. Our sampling indicates a high prevalence of infection and suggests that unusual genotypes of T. gondii are found in Brazil even among domesticated pigs.Toxoplasmose é a causa mais comum de uveíte infecciosa no Brasil, com maior freqüência no sul do país. Coletamos amostras de diafragma e língua de porcos em pequenos e grandes abatedouros e utilizamos biologia molecular para determinar a taxa de infecção e ''DNA genotyping'' para tipar os parasitas. Dezessete das 50 amostras de diafragma (34% e 33 das 50 amostras de língua (66% foram positivas na reação de PCR para T. gondii. A análise restritiva e o sequenciamento do DNA em quatro amostras revelaram que todas apresentam genótipo tipo I no SAG2. No entanto, quando outros loci não ligados foram analisados, estas mesmas amostras se mostraram como tipo III nos marcadores BTUB, SAG3 e GRA6. Uma das amostras (8T mostrava-se como tipo II no SAG3, indicando um perfil misto. Estas amostras demonstraram não só uma alta taxa de infecção, mas também genótipos incomuns que não foram observados com freqüência em estudos prévios. Nosso trabalho

  15. Timeline and geographical distribution of Helicoverpa armigera (Hübner) (Lepidoptera, Noctuidae: Heliothinae) in Brazil

    OpenAIRE

    Sosa-Gómez, Daniel R.; Alexandre Specht; Paula-Moraes, Silvana V.; Adilson Lopes-Lima; Silvia A.C. Yano; Adriana Micheli; Morais,Elisangela G.F.; Paulo Gallo; Pereira,Paulo R.V.S.; José R. Salvadori; Marcos Botton; Maurício M. Zenker; Azevedo-Filho,Wilson S.

    2016-01-01

    ABSTRACT This study presents registers of Helicoverpa armigera (Hübner) occurrence to assess its spatial and temporal distribution in Brazil. We used data from collections, especially from the Southern Region, systematic collections in Rio Grande do Sul, occasional collections of caterpillars and adults in different regions of Brazil, as well as literature registers. We conclude that the introduction of H. armigera in Brazil probably occurred before October 2008. We also register that in Augu...

  16. Genotyping of Leptospira directly in urine samples of cattle demonstrates a diversity of species and strains in Brazil.

    Science.gov (United States)

    Hamond, C; Pestana, C P; Medeiros, M A; Lilenbaum, W

    2016-01-01

    The aim of this study was to identify Leptospira in urine samples of cattle by direct sequencing of the secY gene. The validity of this approach was assessed using ten Leptospira strains obtained from cattle in Brazil and 77 DNA samples previously extracted from cattle urine, that were positive by PCR for the genus-specific lipL32 gene of Leptospira. Direct sequencing identified 24 (31·1%) interpretable secY sequences and these were identical to those obtained from direct DNA sequencing of the urine samples from which they were recovered. Phylogenetic analyses identified four species: L. interrogans, L. borgpetersenii, L. noguchii, and L. santarosai with the most prevalent genotypes being associated with L. borgpetersenii. While direct sequencing cannot, as yet, replace culturing of leptospires, it is a valid additional tool for epidemiological studies. An unexpected finding from this study was the genetic diversity of Leptospira infecting Brazilian cattle.

  17. Prevalence and genotype distribution of Pneumocystis jirovecii in Cuban infants and toddlers with whooping cough.

    Science.gov (United States)

    Monroy-Vaca, Ernesto X; de Armas, Yaxsier; Illnait-Zaragozí, María T; Toraño, Gilda; Diaz, Raúl; Vega, Dania; Alvarez-Lam, Ileana; Calderón, Enrique J; Stensvold, Christen R

    2014-01-01

    This study describes the prevalence and genotype distribution of Pneumocystis jirovecii obtained from nasopharyngeal (NP) swabs from immunocompetent Cuban infants and toddlers with whooping cough (WC). A total of 163 NP swabs from 163 young Cuban children with WC who were admitted to the respiratory care units at two pediatric centers were studied. The prevalence of the organism was determined by a quantitative PCR (qPCR) assay targeting the P. jirovecii mitochondrial large subunit (mtLSU) rRNA gene. Genotypes were identified by direct sequencing of mtLSU ribosomal DNA (rDNA) and restriction fragment length polymorphism (RFLP) analysis of the dihydropteroate synthase (DHPS) gene amplicons. qPCR detected P. jirovecii DNA in 48/163 (29.4%) samples. mtLSU rDNA sequence analysis revealed the presence of three different genotypes in the population. Genotype 2 was most common (48%), followed in prevalence by genotypes 1 (23%) and 3 (19%); mixed-genotype infections were seen in 10% of the cases. RFLP analysis of DHPS PCR products revealed four genotypes, 18% of which were associated with resistance to sulfa drugs. Only contact with coughers (prevalence ratio [PR], 3.51 [95% confidence interval {CI}, 1.79 to 6.87]; P = 0.000) and exposure to tobacco smoke (PR, 1.82 [95% CI, 1.14 to 2.92]; P = 0.009) were statistically associated with being colonized by P. jirovecii. The prevalence of P. jirovecii in infants and toddlers with WC and the genotyping results provide evidence that this population represents a potential reservoir and transmission source of P. jirovecii.

  18. Genotyping of Mycobacterium leprae present on Ziehl-Neelsen-stained microscopic slides and in skin biopsy samples from leprosy patients in different geographic regions of Brazil

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    Amanda Nogueira Brum Fontes

    2012-12-01

    Full Text Available We analysed 16 variable number tandem repeats (VNTR and three single-nucleotide polymorphisms (SNP in Mycobacterium leprae present on 115 Ziehl-Neelsen (Z-N-stained slides and in 51 skin biopsy samples derived from leprosy patients from Ceará (n = 23, Pernambuco (n = 41, Rio de Janeiro (n = 22 and Rondônia (RO (n = 78. All skin biopsies yielded SNP-based genotypes, while 48 of the samples (94.1% yielded complete VNTR genotypes. We evaluated two procedures for extracting M. leprae DNA from Z-N-stained slides: the first including Chelex and the other combining proteinase and sodium dodecyl sulfate. Of the 76 samples processed using the first procedure, 30.2% were positive for 16 or 15 VNTRs, whereas of the 39 samples processed using the second procedure, 28.2% yielded genotypes defined by at least 10 VNTRs. Combined VNTR and SNP analysis revealed large variability in genotypes, but a high prevalence of SNP genotype 4 in the Northeast Region of Brazil. Our observation of two samples from RO with an identical genotype and seven groups with similar genotypes, including four derived from residents of the same state or region, suggest a tendency to form groups according to the origin of the isolates. This study demonstrates the existence of geographically related M. leprae genotypes and that Z-N-stained slides are an alternative source for M. leprae genotyping.

  19. Genotyping of Mycobacterium leprae present on Ziehl-Neelsen-stained microscopic slides and in skin biopsy samples from leprosy patients in different geographic regions of Brazil.

    Science.gov (United States)

    Fontes, Amanda Nogueira Brum; Gomes, Harrison Magdinier; Araujo, Marcelo Ivens de; Albuquerque, Edson Cláudio Araripe de; Baptista, Ida Maria Foschiani Dias; Moura, Maria Manuela da Fonseca; Rezende, Denise Silva; Pessolani, Maria Cristina Vidal; Lara, Flávio Alves; Pontes, Maria Araci de Andrade; Gonçalves, Heitor de Sá; Lucena-Silva, Norma; Sarno, Euzenir Nunes; Vissa, Varalakshmi D; Brennan, Patrick J; Suffys, Philip Noel

    2012-12-01

    We analysed 16 variable number tandem repeats (VNTR) and three single-nucleotide polymorphisms (SNP) in Mycobacterium leprae present on 115 Ziehl-Neelsen (Z-N)-stained slides and in 51 skin biopsy samples derived from leprosy patients from Ceará (n = 23), Pernambuco (n = 41), Rio de Janeiro (n = 22) and Rondônia (RO) (n = 78). All skin biopsies yielded SNP-based genotypes, while 48 of the samples (94.1%) yielded complete VNTR genotypes. We evaluated two procedures for extracting M. leprae DNA from Z-N-stained slides: the first including Chelex and the other combining proteinase and sodium dodecyl sulfate. Of the 76 samples processed using the first procedure, 30.2% were positive for 16 or 15 VNTRs, whereas of the 39 samples processed using the second procedure, 28.2% yielded genotypes defined by at least 10 VNTRs. Combined VNTR and SNP analysis revealed large variability in genotypes, but a high prevalence of SNP genotype 4 in the Northeast Region of Brazil. Our observation of two samples from RO with an identical genotype and seven groups with similar genotypes, including four derived from residents of the same state or region, suggest a tendency to form groups according to the origin of the isolates. This study demonstrates the existence of geographically related M. leprae genotypes and that Z-N-stained slides are an alternative source for M. leprae genotyping.

  20. ISOLATION AND GENOTYPING OF Toxoplasma gondii IN SERONEGATIVE URBAN RATS AND PRESENCE OF ANTIBODIES IN COMMUNICATING DOGS IN BRAZIL

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    Bruno Bergamo RUFFOLO

    2016-01-01

    Full Text Available The role of rodents in the epidemiology of toxoplasmosis was investigated inLondrina, Paraná State, Brazil. One hundred and eighty-one Rattus rattus and one Mus musculus were caught in 37 places. Blood and tissues were collected and submitted to the indirect fluorescence antibody test (IFAT and the bioassay. Serum samples from 61 contacting dogs were also collected. Sixteen rats (8.8% were positive for Toxoplasma gondii, but just two of them were positive by serology and bioassay test. Antibodies were found in nine (4.9% rats. Tissues of nine rats bioassayed were positive and four isolates were obtained. Restriction fragment length polymorphism (RFLP analysis was performed using 12 markers (SAG1, SAG2, SAG2-alt, C22-8, C29-2, L358, PK1, BTUB, GRA6, SAG3, Apico, CS3. Genotyping revealed that the four strains isolated from this study have been isolated before in cats and chickens from Brazil. None of the isolates was identified like clonal archetypal T-types I, II, and III. The rats presented lower serologic Toxoplasma gondii prevalence (8.8% compared to contacting dogs (70.5%.

  1. ISOLATION AND GENOTYPING OF Toxoplasma gondii IN SERONEGATIVE URBAN RATS AND PRESENCE OF ANTIBODIES IN COMMUNICATING DOGS IN BRAZIL

    Science.gov (United States)

    RUFFOLO, Bruno Bergamo; TOLEDO, Roberta dos Santos; MARTINS, Felippe Danyel Cardoso; BUGNI, Felipe Monteiro; da COSTA, Letícia; MARANA, Elizabete Regina Marangoni; NAVARRO, Italmar Teodorico; GARCIA, João Luis; SU, Chunlei; FREIRE, Roberta Lemos

    2016-01-01

    The role of rodents in the epidemiology of toxoplasmosis was investigated in Londrina, Paraná State, Brazil. One hundred and eighty-one Rattus rattus and one Mus musculus were caught in 37 places. Blood and tissues were collected and submitted to the indirect fluorescence antibody test (IFAT) and the bioassay. Serum samples from 61 contacting dogs were also collected. Sixteen rats (8.8%) were positive for Toxoplasma gondii, but just two of them were positive by serology and bioassay test. Antibodies were found in nine (4.9%) rats. Tissues of nine rats bioassayed were positive and four isolates were obtained. Restriction fragment length polymorphism (RFLP) analysis was performed using 12 markers (SAG1, SAG2, SAG2-alt, C22-8, C29-2, L358, PK1, BTUB, GRA6, SAG3, Apico, CS3). Genotyping revealed that the four strains isolated from this study have been isolated before in cats and chickens from Brazil. None of the isolates was identified like clonal archetypal T-types I, II, and III. The rats presented lower serologic Toxoplasma gondii prevalence (8.8%) compared to contacting dogs (70.5%). PMID:27074322

  2. ISOLATION AND GENOTYPING OF Toxoplasma gondii IN SERONEGATIVE URBAN RATS AND PRESENCE OF ANTIBODIES IN COMMUNICATING DOGS IN BRAZIL.

    Science.gov (United States)

    Ruffolo, Bruno Bergamo; Toledo, Roberta dos Santos; Martins, Felippe Danyel Cardoso; Bugni, Felipe Monteiro; Costa, Letícia da; Marana, Elizabete Regina Marangoni; Navarro, Italmar Teodorico; Garcia, João Luis; Su, Chunlei; Freire, Roberta Lemos

    2016-01-01

    The role of rodents in the epidemiology of toxoplasmosis was investigated in Londrina, Paraná State, Brazil. One hundred and eighty-one Rattus rattus and one Mus musculus were caught in 37 places. Blood and tissues were collected and submitted to the indirect fluorescence antibody test (IFAT) and the bioassay. Serum samples from 61 contacting dogs were also collected. Sixteen rats (8.8%) were positive for Toxoplasma gondii, but just two of them were positive by serology and bioassay test. Antibodies were found in nine (4.9%) rats. Tissues of nine rats bioassayed were positive and four isolates were obtained. Restriction fragment length polymorphism (RFLP) analysis was performed using 12 markers (SAG1, SAG2, SAG2-alt, C22-8, C29-2, L358, PK1, BTUB, GRA6, SAG3, Apico, CS3). Genotyping revealed that the four strains isolated from this study have been isolated before in cats and chickens from Brazil. None of the isolates was identified like clonal archetypal T-types I, II, and III. The rats presented lower serologic Toxoplasma gondii prevalence (8.8%) compared to contacting dogs (70.5%).

  3. Timeline and geographical distribution of Helicoverpa armigera (Hübner (Lepidoptera, Noctuidae: Heliothinae in Brazil

    Directory of Open Access Journals (Sweden)

    Daniel R. Sosa-Gómez

    2016-03-01

    Full Text Available ABSTRACT This study presents registers of Helicoverpa armigera (Hübner occurrence to assess its spatial and temporal distribution in Brazil. We used data from collections, especially from the Southern Region, systematic collections in Rio Grande do Sul, occasional collections of caterpillars and adults in different regions of Brazil, as well as literature registers. We conclude that the introduction of H. armigera in Brazil probably occurred before October 2008. We also register that in August 2012 H. armigera was already present from the extreme southern part (Rio Grande do Sul to the extreme northern part (Amapá of Brazil.

  4. Fusarium keratitis in Brazil: genotyping, in vitro susceptibilities, and clinical outcomes

    OpenAIRE

    2013-01-01

    Rafael A Oechsler,1 Tiago M Yamanaka,1 Paulo JM Bispo,1 Juliana Sartori,1 Maria Cecilia Zorat Yu,1 Analy Salles A Melo,2 Darlene Miller,3 Ana Luisa Hofling-Lima1 1Ophthalmology Department, 2Division of Infectious Diseases, Internal Medicine Department, Federal University of São Paulo, São Paulo, Brazil; 3Bascom Palmer Eye Institute, Miller School of Medicine, University of Miami, Miami, FL, USA Background: The purpose of this paper is to describe clinical characteristic...

  5. Genotypic Characterization of Cryptosporidium hominis from Water Samples in São Paulo, Brazil

    Science.gov (United States)

    Araújo, Ronalda S.; Dropa, Milena; Fernandes, Licia N.; Carvalho, Terezinha T.; Sato, Maria Inês Z.; Soares, Rodrigo M.; Matté, Glavur R.; Matté, Maria Helena

    2011-01-01

    The protozoan parasite Cryptosporidium has emerged as one of the most important water contaminants, causing waterborne outbreaks of diarrheal diseases worldwide. The small size of oocysts under the microscope and the possibility of changes in characteristics of oocysts, mainly in environmental samples, make the taxonomy of the genus difficult if morphologic characteristics are considered. This limitation encouraged the application of molecular methods to identify this microorganism. The aim of this study was to detect and identify by nested-polymerase chain reaction oocysts of Cryptosporidium present in water samples in the state of São Paulo, Brazil. Water samples were concentrated through a membrane filter, DNA was extracted by using a standard technique, and both amplification reactions used forward and reverse oligonucleotides that were complementary to Cryptosporidium 18S ribosomal RNA gene sequences. Thirty water samples from different sites of collection in the state of São Paulo were evaluated. Cryptosporidium oocysts were detected in 30% of the samples. By genoptyping, C. hominis and Cryptosporidium sp. were identified in recreational water and C. meleagridis was identified in surface water samples. This is the first report of C. hominis in environmental samples in Brazil. Although identification of Cryptosporidium is still a difficult task, molecular methods are essential for specific identification and are a helpful tool to aid to understand the epidemiology of this parasite in Brazil. PMID:22049036

  6. Distribution of composite CYP1A1 genotypes in Africans, African-Americans and Caucasians.

    Science.gov (United States)

    Garte, S J; Trachman, J; Crofts, F; Toniolo, P; Buxbaum, J; Bayo, S; Taioli, E

    1996-01-01

    We present the genotype distribution of the CYP1A1 gene in a sample of over 300 subjects of various ethnic origins. Genotypes are presented as composites of eight possible alleles, taking into account the three major polymorphisms, including a recently described African-American-specific MspI RFLP. A new nomenclature system is presented for clarifying the various haplotypes. Interesting interracial differences in allelic frequencies and admixture rates were observed for the three polymorphisms. Because of the importance of the CYP1A1 gene (which encodes the aromatic hydrocarbon hydroxylase) as a biomarker of genetic susceptibility to environmental carcinogens such as polycyclic aromatic hydrocarbons, these data may provide a useful reference for future studies of relationships between CYP1A1 genotype and disease susceptibility.

  7. Genotypic distribution of an indigenous model microorganism along an estuarine gradient.

    Science.gov (United States)

    Hawkins, Robert J; Purdy, Kevin J

    2007-11-01

    Using the genus Desulfobulbus as an indigenous model, microbial distribution along an estuarine gradient was investigated. Denaturing gradient gel electrophoresis analysis indicated a sequential change in Desulfobulbus genotypes along the estuary with marine, brackish and freshwater genotypes detected. This differential distribution was significantly correlated with porewater concentrations of chloride, sulphate and nitrate. Temporal analysis indicated that there was a shift in the whole Desulfobulbus community towards to marine end of the estuary by the end of the winter compared with the late summer. This distribution pattern is similar to those seen with other estuarine organisms and, given the correlation with chloride and sulphate, is indicative of classic niche separation within this genus driven by gross environmental factors such as salinity. These results will help in developing a truly ecological description of microbial biodiversity.

  8. Viral hepatitis B, C infection and genotype distribution among cholangiocarcinoma patients in northeast Thailand.

    Science.gov (United States)

    Barusrux, Sahapat; Nanok, Chaiyachet; Puthisawas, Watcharapong; Pairojkul, Chawalit; Poovorawan, Yong

    2012-01-01

    The prevalence of HBV and HCV infection among 295 cholangiocarcinoma (CCA) patients in northeast Thailand was analyzed. Hepatitis B surface antigen (HBsAg) was detected in 8.8% (26/295 cases) and antibodies to HCV (anti-HCV) in 2.7% (8/295 cases) of CCA cases. Screening for HBV DNA was performed in 15 of 26 HBV seropositive cases and genotypes could be determined in all 15. HBV genotypes C and B were detected in 73.3% (11/15 cases) and 26.7% (4/15 cases), respectively. HCV RNA was detected in 87.5% (7/8 cases) of anti-HCV positive cases. Specifically, 57.1% (4/7 cases) were HCV genotype 1a and 42.9% (3/7 cases) were HCV genotype 3a. The prevalence of infection and genotype distribution of both HCV and HBV among CCA in northeast Thailand is comparable to that in the general population, suggesting that HCV and HBV infections are, if at all, not serious risk factors for CCA.

  9. A new trend of genotype distribution of hepatitis B virus infection in southeast China (Fujian), 2006-2013.

    Science.gov (United States)

    Wei, D H; Liu, H Z; Huang, A M; Liu, X L; Liu, J F

    2015-10-01

    HBV genotypes have specific geographical distributions and can serve as epidemiological markers. Accumulated data have shown that the major HBV genotypes in China are B and C. Here, the HBV genotypes were examined from 6817 blood samples, which were collected from patients with chronic HBV infection in Fujian Province during 2006-2013; genotype B was identified in 3384 patients (49·6%), while genotype C was identified in 3430 patients (50·3%). The percentage of patients infected with genotype C gradually increased with age from 39·5% (patients aged 50 years), reaching a peak of 67·3% in the 45-50 years age group. These results clearly demonstrate that the genotype distribution of HBV in Fujian Province has significantly changed in recent years with almost equal numbers of genotype B and genotype C infections existing in the entire patient population, while higher incidence of genotype C infection exists in older patients, but genotype B is no longer dominant in the Fujian area as previously reported.

  10. Distribution of hepatitis B virus genotypes: Phylogenetic analysis and virological characteristics of Genotype C circulating among HBV carriers in Kolkata, Eastern India

    Institute of Scientific and Technical Information of China (English)

    Arup Banerjee; Sibnarayan Datta; Partha K Chandra; Susanta Roychowdhury; Chinmoy Kumar Panda; Runu Chakravarty

    2006-01-01

    AIM: To evaluate the genotype distribution of hepatitis B virus (HBV) in Eastern India and to clarify the phylogenetic origin and virological characteristics of the recently identified genotype C in this region.METHODS: Genotype determination, T1762/A1764mutation in the basal core promoter (BCP) and A1896mutation in the precore region of 230 subjects were determined by restriction fragment length polymorphism method (RFLP) and the result was confirmed by direct sequencing.RESULTS: The predominant genotypes D (HBV/D) and A (HBV/A) were detected in 131/230 (57%) and 57/230(25%) samples. In addition, genotype C (HBV/C) was detected in 42/230 (18%) isolates. Surface gene region was sequenced from 45 isolates (27 HBV/C, 9 HBV/A and 9 HBV/D). Phylogenetic analysis revealed that all of the HBV/C sequences clustered with South East Asian subgenotype (HBV/Cs). The sequence data showed remarkable similarity with a Thai strain (AF068756) (99.5%± 0.4% nucleotide identities) in 90% of the genotype C strains analyzed. T1762/A1764 mutation in BCP region, associated with high ALT was significantly higher in HBeAg negative isolates than HBeAg positive isolates.Frequency of A1896 mutation leading to HBeAg negativity was low.CONCLUSION: The present study reports the genotypic distribution and the characteristics of partial genome sequences of HBV/C isolates from Eastern India. Low genetic diversity and confinement of HBV/C in Eastern India possibly indicate a recent, limited, spread in this region. Genotype C with T1762/A1764 mutation has been reported to increase the risk for hepatocellular carcinoma; therefore genotype C carriers in Eastern India should be carefully monitored.

  11. Mycobacterium tuberculosis of the RDRio genotype is the predominant cause of tuberculosis and associated with multidrug resistance in Porto Alegre City, South Brazil.

    Science.gov (United States)

    Dalla Costa, Elis Regina; Lazzarini, Luiz Claudio Oliveira; Perizzolo, Paulo Fernado; Díaz, Chyntia Acosta; Spies, Fernanda S; Costa, Lucas Laux; Ribeiro, Andrezza W; Barroco, Caroline; Schuh, Sandra Jungblut; da Silva Pereira, Marcia Aparecida; Dias, Claudia F; Gomes, Harrison M; Unis, Gisela; Zaha, Arnaldo; Almeida da Silva, Pedro E; Suffys, Philip N; Rossetti, Maria L R

    2013-04-01

    Spoligotyping has shown Mycobacterium tuberculosis strains to be composed of different lineages, and some of them are not just geographically restricted but also affect specific ethnic populations and are associated with outbreaks and drug resistance. We recently described a particular subtype within the Latin American-Mediterranean (LAM) family, called RD(Rio), widespread in Brazil. Moreover, recent data also indicate that RD(Rio) is present in many countries on all continents and is associated with cavitary disease and multidrug resistance (MDR). To further explore the relationship between RD(Rio) and MDR, we conducted a study in a tuberculosis (TB) reference center responsible for the care of MDR patients in Rio Grande do Sul, the southernmost Brazilian state. From a collection of 237 clinical isolates, RD(Rio) alone was responsible for one-half of all MDR cases, including one large group composed of strains with identical IS6110-restriction fragment length polymorphism (RFLP) and having the LAM5 signature. We additionally had complete data records for 96 patients and could make comparisons between the presence and absence of RD(Rio). No difference in clinical, radiological or laboratory features was observed, but a significantly greater number of cases with MDR were described in patients infected with an RD(Rio) strain (P = 0.0015). Altogether, RD(Rio) was responsible for 38% of all TB cases. These data support and confirmed previous findings that RD(Rio) is the main agent responsible for TB in Brazil and is associated with drug resistance. Considering that RD(Rio) is a globally distributed genotype, such findings raise concern about the increase in MDR in certain human populations.

  12. Hepatitis C virus (HCV) genotypes distribution: an epidemiological up-date in Europe.

    Science.gov (United States)

    Petruzziello, Arnolfo; Marigliano, Samantha; Loquercio, Giovanna; Cacciapuoti, Carmela

    2016-01-01

    Hepatitis C virus (HCV) infection is a major public health burden in Europe, causing an increasing level of liver-related morbidity and mortality, characterized by several regional variations in the genotypes distribution. A comprehensive review of the literature from 2000 to 2015 was used to gather country-specific data on prevalence and genotype distribution of HCV infection in 33 European countries (about 80 % of the European population), grouped in three geographical areas (Western, Eastern and Central Europe), as defined by the Global Burden of Diseases project (GBD). The estimated prevalence of HCV in Europe is 1.7 % showing a decrease than previously reported (- 0.6 %) and accounting over 13 million of estimated cases. The lowest prevalence (0.9 %) is reported from Western Europe (except for some rural areas of Southern Italy and Greece) and the highest (3.1 %) from Central Europe, especially Romania and Russia. The average HCV viraemic rate is 72.4 %, with a population of almost 10 million of HCV RNA positive patients. Genotype distribution does not show high variability among the three macro-areas studied, ranging between 70.0 % (Central Europe), 68.1 % (Eastern Europe) and 55.1 % (Western Europe) for genotype 1, 29.0 % (Western Europe), 26.6 % (Eastern Europe) and 21.0 % (Central Europe) for genotype 3. Genotype 2 seems, instead, to have a major prevalence in the Western Europe (8.9 %), if compared to Eastern (4.3 %) or Central (3.2 %), whereas genotype 4 is present especially in Central and Western area (4.9 % and 5.8 %, respectively). Despite the eradication of transmission by blood products, HCV infection continues to be one of the leading blood-borne infections in Europe. The aim of this review is, therefore, to provide an update on the epidemiology of HCV infection across Europe, and to foster the discussion about eventual potential strategies to eradicate it.

  13. Spatial distribution of Legionella pneumophila MLVA-genotypes in a drinking water system.

    Science.gov (United States)

    Rodríguez-Martínez, Sarah; Sharaby, Yehonatan; Pecellín, Marina; Brettar, Ingrid; Höfle, Manfred; Halpern, Malka

    2015-06-15

    Bacteria of the genus Legionella cause water-based infections, resulting in severe pneumonia. To improve our knowledge about Legionella spp. ecology, its prevalence and its relationships with environmental factors were studied. Seasonal samples were taken from both water and biofilm at seven sampling points of a small drinking water distribution system in Israel. Representative isolates were obtained from each sample and identified to the species level. Legionella pneumophila was further determined to the serotype and genotype level. High resolution genotyping of L. pneumophila isolates was achieved by Multiple-Locus Variable number of tandem repeat Analysis (MLVA). Within the studied water system, Legionella plate counts were higher in summer and highly variable even between adjacent sampling points. Legionella was present in six out of the seven selected sampling points, with counts ranging from 1.0 × 10(1) to 5.8 × 10(3) cfu/l. Water counts were significantly higher in points where Legionella was present in biofilms. The main fraction of the isolated Legionella was L. pneumophila serogroup 1. Serogroup 3 and Legionella sainthelensis were also isolated. Legionella counts were positively correlated with heterotrophic plate counts at 37 °C and negatively correlated with chlorine. Five MLVA-genotypes of L. pneumophila were identified at different buildings of the sampled area. The presence of a specific genotype, "MLVA-genotype 4", consistently co-occurred with high Legionella counts and seemed to "trigger" high Legionella counts in cold water. Our hypothesis is that both the presence of L. pneumophila in biofilm and the presence of specific genotypes, may indicate and/or even lead to high Legionella concentration in water. This observation deserves further studies in a broad range of drinking water systems to assess its potential for general use in drinking water monitoring and management.

  14. Helicobacter pylori vacA and cagA genotypes in patients from northeastern Brazil with upper gastrointestinal diseases

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    Meyssa Quezado de Figueiredo Cavalcante

    2012-06-01

    Full Text Available Helicobacter pylori causes chronic gastric inflammation and significantly increases the risk of duodenal and gastric ulcer disease and distal gastric carcinoma. In this study, we evaluated the Helicobacter pylori vacA and cagA genotypes in patients from a Brazilian region where there is a high prevalence of gastric cancer. Polymerase chain reaction (PCR was used to investigate vacA mosaicism and cagA status in the gastric mucosa of 134 H. pylori-positive patients, including 76 with gastritis: 28 with peptic ulcer disease and 30 with gastric cancer. The s1m1 variant was the predominant vacA genotype observed, whereas the s1 allele was more frequently observed in patients with more severe diseases associated with H. pylori infection [p = 0.03, odds ratio (OR = 5.72, 95% confidence interval (CI = 1.15-38.60]. Furthermore, all of the s1 alleles were s1b. Mixed vacA m1/m2 strains were found more frequently in patients with gastric cancer and a cagA-positive status was significantly associated with gastric cancer (p = 0.016, OR = 10.36, 95% CI = 1.35-217.31. Patients with gastric cancer (21/21, 100%, p = 0.006 or peptic ulcers (20/21, 95%, p = 0.02 were more frequently colonised by more virulent H. pylori strains compared to gastritis patients (41/61, 67.2%. In conclusion, in the northeastern of Brazil, which is one of the regions with the highest prevalence of gastric cancer in the country, infection with the most virulent H. pylori strains, carrying the cagA gene and s1m1 vacA alleles, predominates and is correlated with more severe H. pylori-associated diseases.

  15. Norovirus GII.Pe Genotype: Tracking a Foodborne Outbreak on a Cruise Ship Through Molecular Epidemiology, Brazil, 2014.

    Science.gov (United States)

    Morillo, Simone Guadagnucci; Luchs, Adriana; Cilli, Audrey; Ribeiro, Cibele Daniel; de Cássia Compagnoli Carmona, Rita; do Carmo Sampaio Tavares Timenetsky, Maria

    2016-12-08

    Norovirus (NoV) is recognized as the most common cause of foodborne outbreaks. In 2014, an outbreak of acute gastroenteritis occurred on a cruise ship in Brazil, and NoV became the suspected etiology. Here we present the molecular identification of the NoV strains and the use of sequence analysis to determine modes of virus transmission. Food (cream cheese, tuna salad, grilled fish, orange mousse, and vegetables soup) and clinical samples were analyzed by ELISA, conventional RT-PCR, qRT-PCR, and sequencing. Genogroup GII NoV was identified by ELISA and conventional RT-PCR in fecal samples from 5 of 12 patients tested (41.7%), and in the orange mousse food sample by conventional RT-PCR and qRT-PCR. Two fecal GII NoV samples and the orange mousse GII NoV sample were successfully genotyped as GII.Pe (ORF 1), revealed 98.0-98.8% identities among them, and shared phylogenetically distinct cluster. Establishing the source of a NoV outbreak can be a challenging task. In this report, the molecular analysis of the partial RdRp NoV gene provided a powerful tool for genotyping (GII.Pe) and tracking of outbreak-related samples. In addition, the same fast and simple extraction methods applied to clinical samples could be successfully used for complex food matrices, and have the potential to be introduced in routine laboratories for screening foods for presence of NoV.

  16. Distribution and Genotypic Analysis of Rubella Virus in West Java on 2011–2013

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    Acep T. Hardiana

    2015-03-01

    Full Text Available Rubella spreads around the world and dangerous especially for pregnant women because it can cause abortion, fetal death or congenital rubella syndrome (CRS almost 90% cases. Spread and identifiation of rubella genotypes in Indonesia is important to ensure the indigenous or importation virus. The purpose of this study was to determine the rubella genotype distribution and spread in West Java in effective prevention efforts. This study was conducted by examining the urine samples of suspect measles patients using WHO protocol through the virus isolation in vero cells, PCR, DNA sequencing, and analysis of the sequencing results. Samples taken from the measles-rubella surveillance program nationwide in 2011 ̶ 2013. Of the 251 urine samples were examined, 32 samples (12.7% were positive. A total of 28 cases (87.5% were genotype 1E while the remaining 4 cases (12.5% were genotype 2B. Rubella virus spread primarily occurs in District of Kuningan, Garut, Tasikmalaya, Bandung City, Cimahi City, and Tasikmalaya City. Prevention of the rubella diseases and CRS surveillance in endemic areas should be priority task to break the chain of transmission.

  17. Prevalence and genotype distribution of human papillomavirus infection in asymptomatic women in Liaoning province, China.

    Science.gov (United States)

    Xue, Hui; Lin, Xuyong; Li, Tianren; Yan, Xiaoxia; Guo, Kejun; Zhang, Yi

    2015-07-01

    Infection by human papillomavirus (HPV) is a necessary cause of cervical cancer. The purpose of this study was to investigate the prevalence and genotype distribution of HPV infection in Chinese women who were asymptomatic for cervical diseases. Cervical cytology samples were collected from 6479 asymptomatic Chinese women of Liaoning province, and tested for various HPV genotypes using a chip hybridization assay. HPV was found in 10.3% of all the asymptomatic women studied, with the prevalence of high risk HPV (HR HPV) and low risk HPV (LR HPV) being 9.5% and 1.1%, respectively. HPV genotypes 16, 52, and 58 were found the most frequently genotypes in the HR HPV positive women, and were present in 26.2%, 19.4% and 13.8%, respectively. A graph of HR HPV positive infection rates as a function of age is U-shaped, with a peak in women less than 30 years old and a second peak among women older than 50 years. Nearly half of the women infected with either HR HPV or LR HPV presented a normal looking cervix upon visual examination. The current study demonstrates that the epidemiology of HPV infection in asymptomatic Chinese women in Liaoning province is different from that in women from other regions, even from patients with cervical lesions in the same region. These findings could be used to guide the generation and design of an HPV vaccine for this population.

  18. Frequency distribution of hepatitis C virus genotypes in different geographical regions of Pakistan and their possible routes of transmission

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    Riazuddin Sheikh

    2008-05-01

    Full Text Available Abstract Background Information regarding hepatitis C virus genotypes and subtypes circulating in Pakistan and various risk factors for their transmission are not known well. The specific objective of this study was to find out the frequency of various HCV genotypes present in well-characterized Pakistani HCV isolates and their possible routes of transmission. Methods A total of 3351 serum samples were tested by type-specific genotyping assay. Out of 3351 HCV RNA positive patients, 2039 were males and 1312 were females. As regard as genotyped samples, 2165 belonged to Punjab region, 823 belonged to N.W.F.P., 239 to Sindh and 124 patients were from Balochistan. Results Out of the total 3351 tested serum samples, type-specific PCR fragments were observed in 3150 (94.00% serum samples. The distribution of genotypes of the typeable samples as determined by this assay, was as follows: 1664 (49.05% genotype 3a; 592 (17.66% genotype 3b; 280 (8.35% genotype 1a; 252 (7.52% genotype 2a; 101 (3.01% genotype 1b; 50 (1.49% with genotype 4; 25 (0.75% with 3c; 27 (0.80% genotype 2b; 6 (0.18% with subtype 5a; 5 (0.15% genotype 1c; 4 (0.12% with subtype 6a; 3 (0.09% genotype 2c; and 161 (4.80% patients were infected with mixed infection. Two hundred and one (5.99% serum samples were found untypeable by the present genotyping system. More than 86% and 72% patients with genotypes 3a and 3b respectively had received multiple injections in past. For genotypes 1a and 1b the route of transmission was major/minor surgery along with unknown reasons. Majority of the cases with type 2a, 2b and indeterminate genotypes were sporadic. Mixed infections were common in thalassaemic patients. Conclusion The most common HCV genotype in Pakistan is type 3a. Regional difference in genotypes was observed only in Balochistan province of Pakistan. More than 70% of the cases were acquired in hospitals through reuse of needles/syringes and major/minor surgery that is very common in this

  19. Prevalence, risk factors and genotypes of hepatitis B infection among HIV-infected patients in the State of MS, Central Brazil

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    Solange Zacalusni Freitas

    2014-09-01

    Full Text Available Objectives: A cross-sectional study on prevalence of HBV and HDV infection, risk factors and genotype distribution of HBV infection was conducted among 848 HIV-infected patients in Mato Grosso do Sul, Central Brazil. Methods: Serum samples of 848 participants were tested for hepatitis B surface antigen (HBsAg, hepatitis B core antibody (anti-HBc and hepatitis surface antibody (anti-HBs. HBsAg positive samples were tested for anti-HBc IgM, HBeAg, anti-HBe, anti-HCV, and total anti-HDV. HBsAg and anti-HBc positive were subjected to DNA extraction. Viral DNA was amplified by semi-nested PCR for the regions pre-S/S and then purified and genotyped/subgenotyped by direct sequencing. Student's t-test, chi-square test and Fisher's exact test were used to compare variables and to evaluate association between HBV positivity (defined as anti-HBc and/or HBsAg positivity and risk factors. Results: Among the 848 HIV infected patients investigated 222 had serological markers of HBV infection. The prevalence rate of HIV-HBV coinfection was 2.5% (21/848; 95% CI: 1.4–3.5%; 484 (57.1% patients were susceptible for HBV infection. There were no cases of anti-HDV positive and only one (0.1% anti-HCV-positive case among the HIV-HBV coinfected patients. Male gender, increasing age, family history of hepatitis, use of illicit drug, and homosexual activity were independent factors associated with HBV exposure. The phylogenetic analysis based on the S gene region revealed the presence of genotypes D (76.9%, F (15.4% and A (7.7% in the study sample. Conclusion: This study demonstrates the low prevalence of HIV-HBV infection and also highlights the need for early vaccination against HBV as well as testing for HBV, HCV and HDV in all HIV-infected individuals.

  20. In vitro culture of a novel genotype of Ehrlichia sp. from Brazil.

    Science.gov (United States)

    Zweygarth, E; Schöl, H; Lis, K; Cabezas Cruz, A; Thiel, C; Silaghi, C; Ribeiro, M F B; Passos, L M F

    2013-11-01

    Ehrlichiae are obligate intracytoplasmic Gram-negative, tick-borne bacteria belonging to the Anaplasmataceae family. Ehrlichioses are considered emerging diseases in both humans and animals. Several members of the genus Ehrlichia have been isolated and propagated in vitro. This study describes the continuous propagation of a Brazilian Ehrlichia sp. isolate in IDE8 tick cells, canine DH82 cells and bovine aorta cells. Initially, the organisms were isolated from the haemolymph of a Rhipicephalus (Boophilus) microplus tick into IDE8 cells. Infected IDE8 cells were brought from Brazil to Germany, where the organisms were continuously propagated in IDE8, DH82 and bovine aorta cells. Bovine aorta cells were infected and propagated for 3 months, corresponding to six subcultures, whereas the other two infected cell lines were kept for more than 1 year. During the cultivation period, 36 and 14 subcultures were carried out in IDE8 and DH82 cell cultures, respectively. Reinfection of IDE8 cells with organisms grown in DH82 cells was achieved. Sequence analysis made with a fragment of the 16S rRNA gene showed that this Ehrlicha sp. is closely related to Ehrlichia canis. However, the maximum likelihood phylogenetic tree shows that it falls in a separate phylogenetic clade from E. canis.

  1. Genotypes of Candida albicans involved in development of candidiasis and their distribution in oral cavity of non-candidiasis individuals.

    Science.gov (United States)

    Takagi, Yuki; Hattori, Hisao; Adachi, Hidesada; Takakura, Shunji; Horii, Toshinobu; Chindamporn, Ariya; Kitai, Hiroki; Tanaka, Reiko; Yaguchi, Takashi; Fukano, Hideo; Kawamoto, Fumihiko; Shimozato, Kazuo; Kanbe, Toshio

    2011-01-01

    Genotype characteristics and distribution of commensal Candida albicans should be studied to predict the development of candidiasis, however, extensive genotype analysis of commensal C. albicans has not been made. In this study, 508 C. albicans isolates were collected from patients with/without candidiasis and divided into 4 isolate groups (SG-1, oral cavity of non-candidiasis patients; SG-2, patients with cutaneous candidiasis; SG-3, patients with vaginal candidiasis; SG-4, patients with candidemia). These isolates were characterized to study the relationship between genotypes and pathogenicity using microsatellite analysis. Using CDC3 and CAI, 5 genotypes (I, 111: 115/33: 41; II, 115: 119/23: 23; III, 115: 123/18: 27; IV, 115: 123/33: 40; and V, 123: 127/32: 41) were found in 4.2%, 8.9%, 7.1%, 2.2% and 3.1% of the isolates, respectively. Genotypes II and III were commonly found in all isolate groups. These genotypes were further divided into 28 types by additional HIS3 and CAIII microsatellite markers. In this analysis, C. albicans with type 6 and type 23 was widely distributed as a commensal species in the oral cavity of non-candidiasis patients and found to be related with candidiasis development. Additionally, genotypes I and IV were found in SG-2 and/or SG-4, suggesting that the fungus with those genotypes is also involved in this development. In contrast, genotype V was not identified in any infective isolates.

  2. Trypanosoma rangeli genotypes association with Rhodnius prolixus and R. pallescens allopatric distribution in Central America.

    Science.gov (United States)

    Salazar-Antón, Fernando; Urrea, Daniel Alfonso; Guhl, Felipe; Arévalo, Carolina; Azofeifa, Gabriela; Urbina, Andrea; Blandón-Naranjo, Melissa; Sousa, Octavio E; Zeledón, Rodrigo; Vallejo, Gustavo Adolfo

    2009-12-01

    Previous kDNA polymorphism-based reports have revealed the existence of two Trypanosoma rangeli genotypes (KP1+ and KP1-): SL and SSU rRNA gene polymorphism-based studies have revealed that five genotypes (A-E) are distributed throughout different Latin-American countries. Some evidence has shown that the genotypes' biogeographical distribution is associated with sympatric Rhodnius species. 12 T. rangeli isolates from humans and reservoirs from El Salvador, Guatemala, Honduras, Costa Rica and Panama were characterised by kDNA and mini-exon gene intergene spacer analysis and compared to 12 previously characterised isolates from humans and vectors from Colombia, Guatemala, Honduras and Venezuela. Central American isolates corresponded to genotypes called KP1(+) or lineage A and KP1(-) or lineage C. Such dimorphism was corroborated by randomly amplified polymorphic DNA (RAPD) in 22 selected isolates; a dendrogram was thus produced having two defined branches. One branch grouped KP1(-) or lineage C strains isolated from Rhodnius colombiensis (Colombia), humans (Panama), Procyon lotor and Choloepus hoffmanni (Costa Rica). The other group was formed by KP1(+) or lineage A strains isolated from Rhodnius prolixus (Colombia, Venezuela) and humans (El Salvador, Guatemala, Honduras). These results present evidence that both groups infect different mammals (humans, domestic and silvatic animals) having no association with any particular vertebrate species; however, T. rangeli KP1(+) or (A) strains have been isolated in Central America in areas where R. prolixus circulate (Honduras, El Salvador and Guatemala) and KP1(-) or (C) strains have been isolated in areas where Rhodnius pallescens is the main vector (Panama and Costa Rica) indicating a parasite-vector association. The same lineages circulate in Andean countries (Colombia, Venezuela, Ecuador and Peru), KP1+ being associated with members of the prolixus group (R. prolixus and Rhodnius robustus) and KP1- with members of the

  3. Morphological, genotypic, and physiological characterization of Acanthamoeba isolates from keratitis patients and the domestic environment in Vitoria, Espírito Santo, Brazil.

    Science.gov (United States)

    Duarte, Juliana L; Furst, Cinthia; Klisiowicz, Débora R; Klassen, Giseli; Costa, Adriana O

    2013-09-01

    Amoebae of the genus Acanthamoeba are free-living protozoa that can cause granulomatous encephalitis and keratitis in humans. In this study, four clinical and three household dust isolates obtained in Vitória, Espírito Santo, Brazil were characterized by their morphological, genotypic, and physiological properties. All isolates belonged to group II according to Pussard and Pons' cyst morphology. Analysis of their 18S rDNA sequence identified one isolate from household dust as genotype T11 and the others six samples as genotype T4. Five T4 isolates presented a highly variable region (DF3) in 18S rDNA identical to those previously described. Physiological assays carried out with trophozoites in co-culture with bacteria or in axenic conditions showed all samples tolerated temperatures up to 37°C, regardless of culture method. One keratitis isolate grew at 42°C in co-culture with bacteria. Most isolates in co-culture survived at 1.0M, except a T11 isolate, which tolerated up to 0.5M. The isolates did not grow at 42°C and did not tolerate 0.5M and 1.0M under axenic condition. This is the first report of 18S rRNA gene genotyping applied to Acanthamoeba isolated from keratitis patients in Brazil. The results also indicated that osmo-tolerance is dependent on the culture system.

  4. Geographic distribution of phlebotomine sandfly species (Diptera: Psychodidae) in Central-West Brazil

    OpenAIRE

    Paulo Silva de Almeida; Andrey José de Andrade; Alan Sciamarelli; Josué Raizer; Jaqueline Aparecida Menegatti; Sandra Cristina Negreli Moreira Hermes; Maria do Socorro Laurentino de Carvalho; Rodrigo Gurgel-Gonçalves

    2015-01-01

    This study updates the geographic distributions of phlebotomine species in Central-West Brazil and analyses the climatic factors associated with their occurrence. The data were obtained from the entomology services of the state departments of health in Central-West Brazil, scientific collections and a literature review of articles from 1962-2014. Ecological niche models were produced for sandfly species with more than 20 occurrences using the Maxent algorithm and eight climate variables. In a...

  5. New distribution records of Mesoclemmys vanderhaegei (Testudines: Chelidae from southeastern Brazil, including observations on reproduction

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    Fábio Maffei

    2016-09-01

    Full Text Available Mesoclemmys vanderhaegei is a poorly known freshwater turtle widely distributed in central South America, where it occurs in Argentina, Paraguay, Brazil, and probably Bolivia.  It is considered “Near Threatened” by the IUCN Red List and “Data Deficient” by other local lists. Herein, we present new records and data on the reproductive biology of Mesoclemmys vanderhaegei in southeastern Brazil

  6. Cyanobacterial dominance in Brazil: Distribution and environmental preferences

    NARCIS (Netherlands)

    Soares, M.C.S.; Miranda, A.; Mello, M.M.; Roland, F.; Lurling, M.

    2013-01-01

    Based on a literature survey, we evaluated the periods of cyanobacterial dominance in Brazil. We hypothesized that variability of environmental forces along the country will promote or facilitate temporal and spatial mosaic in cyanobacterial dominance. The most striking outcomes are related to the d

  7. Dengue virus 2 American-Asian genotype identified during the 2006/2007 outbreak in Piauí, Brazil reveals a Caribbean route of introduction and dissemination of dengue virus in Brazil.

    Science.gov (United States)

    Barcelos Figueiredo, Leandra; Sakamoto, Tetsu; Leomil Coelho, Luiz Felipe; de Oliveira Rocha, Eliseu Soares; Gomes Cota, Marcela Menezes; Ferreira, Gustavo Portela; de Oliveira, Jaquelline Germano; Kroon, Erna Geessien

    2014-01-01

    Dengue virus (DENV) is the most widespread arthropod-borne virus, and the number and severity of outbreaks has increased worldwide in recent decades. Dengue is caused by DENV-1, DENV- 2, DENV-3 and DENV-4 which are genetically distant. The species has been subdivided into genotypes based on phylogenetic studies. DENV-2, which was isolated from dengue fever patients during an outbreak in Piaui, Brazil in 2006/2007 was analyzed by sequencing the envelope (E) gene. The results indicated a high similarity among the isolated viruses, as well as to other DENV-2 from Brazil, Central America and South America. A phylogenetic and phylogeographic analysis based on DENV-2E gene sequences revealed that these viruses are grouped together with viruses of the American-Asian genotype in two distinct lineages. Our results demonstrate the co-circulation of two American-Asian genotype lineages in northeast Brazil. Moreover, we reveal that DENV-2 lineage 2 was detected in Piauí before it disseminated to other Brazilian states and South American countries, indicating the existence of a new dissemination route that has not been previously described.

  8. Effect of Water Stress on Root Distribution and Extension of Different Triticale Genotypes

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    H.R. Khazaei

    2014-12-01

    Full Text Available Root depth and distribution have an important role in drought resistance and optimization of moisture content of soil. This research was carried out in order to consider of root response of triticale genotypes to water stress and recognition of root trait that can effective in resistance of water stress. This experiment was in a factorial experiment based on completely random design on the year 2009. The genotypes of triticale was included (i ET-82-15 (ii ET-82-8 (iii ET-82-17 and commercial triticale genotype Juanillo-92. Two irrigation regimes included 100 and 50 % of field capacity, respectively. The result showed that water stress result in increased 9% of root depth in each plant. Differences between minimum root depth was observed in ET-82-15 rather than maximum root depth in Juanillo-92 was approximately 8.2 centimeters. Late irrigation caused to diminish 25% of root length. Differences between maximum root length in ET-82-15 and minimum root length in ET-82-17 was not significant (p

  9. Molecular characterization, distribution, and dynamics of hepatitis C virus genotypes in blood donors in Colombia.

    Science.gov (United States)

    Mora, Mónica Viviana Alvarado; Romano, Camila Malta; Gomes-Gouvêa, Michele Soares; Gutiérrez, Maria Fernanda; Carrilho, Flair José; Pinho, João Renato Rebello

    2010-11-01

    Hepatitis C virus (HCV) is a frequent cause of acute and chronic hepatitis and a leading cause for cirrhosis of the liver and hepatocellular carcinoma. HCV is classified in six major genotypes and more than 70 subtypes. In Colombian blood banks, serum samples were tested for anti-HCV antibodies using a third-generation ELISA. The aim of this study was to characterize the viral sequences in plasma of 184 volunteer blood donors who attended the "Banco Nacional de Sangre de la Cruz Roja Colombiana," Bogotá, Colombia. Three different HCV genomic regions were amplified by nested PCR. The first of these was a segment of 180 bp of the 5'UTR region to confirm the previous diagnosis by ELISA. From those that were positive to the 5'UTR region, two further segments were amplified for genotyping and subtyping by phylogenetic analysis: a segment of 380 bp from the NS5B region; and a segment of 391 bp from the E1 region. The distribution of HCV subtypes was: 1b (82.8%), 1a (5.7%), 2a (5.7%), 2b (2.8%), and 3a (2.8%). By applying Bayesian Markov chain Monte Carlo simulation, it was estimated that HCV-1b was introduced into Bogotá around 1950. Also, this subtype spread at an exponential rate between about 1970 to about 1990, after which transmission of HCV was reduced by anti-HCV testing of this population. Among Colombian blood donors, HCV genotype 1b is the most frequent genotype, especially in large urban conglomerates such as Bogotá, as is the case in other South American countries.

  10. Α-Thalassemia: Genotypic Profile Associated with Ethnicity and Hematological Differentiation of Iron Deficiency Anemia in the Region of Uberaba, Minas Gerais, Brazil.

    Science.gov (United States)

    de Souza, Renata A Volpe; Carlos, Aline Menezes; de Souza, Bruna M Bereta; Rodrigues, Cibele Velloso; Pereira, Gilberto de Araujo; Moraes-Souza, Helio

    2015-01-01

    α-Thalassemia (α-thal) is a hereditary hemoglobinopathy characterized by microcytic anemia due to impaired production of α chains of human globin. Brazilian studies show that the most common genotype is an -α(3.7) deletion with the loss of one or two α genes. As the production of α chains is not as accentuated in these cases, the correct diagnosis can only be achieved through molecular analysis that is not usually routinely performed by laboratories. We investigated the occurrence of α-thal babies born between September 2011 to January 2013 at the hospital of the Universidade Federal do Triângulo Mineiro (UFTM), Uberaba, Brazil, and blood donors of the Uberaba Regional Blood Center, Hemominas Foundation, Uberaba, Brazil, correlating it with ethnicity and differences between hematological parameters of donors, α-thal and iron deficiency patients. α-Thalassemia was investigated for the most common deleted alleles (-α(3.7), -α(4.2), - -(SEA), - -(FIL), - -(THAI), -(α)(20.5) and - -(MED)). The incidence in newborns was 13.16% with a predominance of heterozygosity for the -α(3.7) genotype (12.35%), followed by the -α(3.7)/-α(3.7) (0.46%) and αα/-α(4.2) genotypes (0.35%). In blood donors, the prevalence of α-thal was 14.89%, with all cases being heterozygous for the -α(3.7) deletion. There was an association of the α-thal genotype with African ancestors for both groups, thereby confirming published data and showing the strong influence of Blacks on the composition of the population of Brazil's southeastern region. Minor changes were found between hematological parameters of blood donors with iron deficiency and α-thal that did not contribute to the differential diagnosis between the two types of anemia.

  11. Myxomycetes in Alagoas state (Brazil and notes on its distribution

    Directory of Open Access Journals (Sweden)

    Andrea Carla Caldas Bezerra

    2014-09-01

    Full Text Available The state of Alagoas is located in the northeastern region of Brazil, and covers an area of 27,767 km2. Several different ecosystem types exist in this area, including mangroves forests and Atlantic rainforest on the coast, and Caatinga inland. The literature reports the occurrence of 43 species of Myxomycetes in Alagoas, all of which are recorded in humid forest environments, or in stored sugarcane bagasse. This study is the first one to record members of family Didymiaceae, and the genera Badhamia, Comatricha, Perichaena and Stemonaria in Alagoas. A species key is presented. Licea succulenticola, Reticularia jurana and Stemonaria longa are new references for the Caatinga biome. Licea succulenticola is also reported for the first time in Brazil.

  12. A novel Ehrlichia genotype strain distinguished by the TRP36 gene naturally infects cattle in Brazil and causes clinical manifestations associated with ehrlichiosis.

    Science.gov (United States)

    Aguiar, Daniel M; Ziliani, Thayza F; Zhang, Xiaofeng; Melo, Andreia L T; Braga, Isis A; Witter, Rute; Freitas, Leodil C; Rondelli, André L H; Luis, Michele A; Sorte, Eveline C B; Jaune, Felipe W; Santarém, Vamilton A; Horta, Mauricio C; Pescador, Carolina A; Colodel, Edson M; Soares, Herbert S; Pacheco, Richard C; Onuma, Selma S M; Labruna, Marcelo B; McBride, Jere W

    2014-09-01

    A novel Ehrlichia genotype most closely related to E. canis was reported in North American cattle in 2010, and a similar agent was subsequently identified in the hemolymph of Brazilian Rhipicephalus (Boophilus) microplus ticks and isolated in 2012. The purpose of this study was to determine whether this or other novel ehrlichial agents naturally infect Brazilian cattle. Using PCR targeting the genus-conserved dsb gene, DNA from this novel ehrlichial agent in Brazilian cattle was detected. Attempts to isolate the organism in vitro were performed using DH82 cells, but morulae and ehrlichial DNA could only be detected for approximately one month. In order to further molecularly characterize the organism, PCR was performed using primers specific for multiple E. canis genes (dsb, rrs, and trp36). Sequence obtained from the conserved rrs and dsb genes demonstrated that the organism was 99-100% identical to the novel Ehrlichia genotypes previously reported in North American cattle (rrs gene) and Brazilian ticks (rrs and dsb genes). However, analysis of the trp36 gene revealed substantial strain diversity between these Ehrlichia genotypes strains, including divergent tandem repeat sequences. In order to obtain preliminary information on the potential pathogenicity of this ehrlichial agent and clinical course of infection, a calf was experimentally infected. The calf showed clinical signs of ehrlichiosis, including fever, depression, lethargy, thrombocytopenia, and morulae were observed in peripheral blood monocytes. This study reports a previously unrecognized disease-causing Ehrlichia sp. in Brazilian cattle that is consistent with the genotype previously described in North America cattle and ticks from Brazil. Hence, it is likely that this is the organism previously identified as Ehrlichia bovis in Brazil in 1982. Furthermore, we have concluded that strains of these Ehrlichia genotypes can be molecularly distinguished by the trp36 gene, which has been widely utilized to

  13. Expanding the knowledge of the geographic distribution of Trypanosoma cruzi TcII and TcV/TcVI genotypes in the Brazilian Amazon.

    Science.gov (United States)

    Lima, Valdirene Dos Santos; Xavier, Samanta Cristina das Chagas; Maldonado, Irene Fabíola Roman; Roque, André Luiz Rodrigues; Vicente, Ana Carolina Paulo; Jansen, Ana Maria

    2014-01-01

    Trypanosoma cruzi infection is a complex sylvatic enzooty involving a wide range of animal species. Six discrete typing units (DTUs) of T. cruzi, named TcI to TcVI, are currently recognized. One unanswered question concerning the epidemiology of T. cruzi is the distribution pattern of TcII and hybrid DTUs in nature, including their virtual absence in the Brazilian Amazon, the current endemic area of Chagas disease in Brazil. Herein, we characterized biological samples that were collected in previous epizootiological studies carried out in the Amazon Basin in Brazil. We performed T. cruzi genotyping using four polymorphic genes to identify T. cruzi DTUs: mini-exon, 1f8, histone 3 and gp72. This analysis was conducted in the following biological samples: (i) two T. cruzi isolates obtained by culturing of stools from the triatomine species Rhodnius picttipes and (ii) five serum samples from dogs in which trypomastigotes were observed during fresh blood examination. We report for the first time the presence of TcII and hybrid DTUs (TcV/TcVI) in the Amazon region in mixed infections with TcI. Furthermore, sequencing of the constitutive gene, gp72, demonstrated diversity in TcII even within the same forest fragment. These data show that TcII is distributed in the five main Brazilian biomes and is likely more prevalent than currently described. It is very probable that there is no biological or ecological barrier to the transmission and establishment of any DTU in any biome in Brazil.

  14. Essential Oil Variation from Twenty Two Genotypes of Citrus in Brazil-Chemometric Approach and Repellency Against Diaphorina citri Kuwayama.

    Science.gov (United States)

    Andrade, Moacir Dos Santos; Ribeiro, Leandro do Prado; Borgoni, Paulo Cesar; Silva, Maria Fátima das Graças Fernandes da; Forim, Moacir Rossi; Fernandes, João Batista; Vieira, Paulo Cezar; Vendramin, José Djair; Machado, Marcos Antônio

    2016-06-22

    The chemical composition of volatile oils from 22 genotypes of Citrus and related genera was poorly differentiated, but chemometric techniques have clarified the relationships between the 22 genotypes, and allowed us to understand their resistance to D. citri. The most convincing similarities include the synthesis of (Z)-β-ocimene and (E)-caryophyllene for all 11 genotypes of group A. Genotypes of group B are not uniformly characterized by essential oil compounds. When stimulated with odor sources of 22 genotypes in a Y-tube olfactometer D. citri preferentially entered the arm containing the volatile oils of Murraya paniculata, confirming orange jasmine as its best host. C. reticulata × C. sinensis was the least preferred genotype, and is characterized by the presence of phytol, (Z)-β-ocimene, and β-elemene, which were not found in the most preferred genotype. We speculate that these three compounds may act as a repellent, making these oils less attractive to D. citri.

  15. Light, distribution company in Brazil; Light, compagnie de distribution d'electricite au Bresil

    Energy Technology Data Exchange (ETDEWEB)

    Meritet, S. [Pari-9 Univ. Paris-Dauphine, Centre de Geopolitique de l' Energie et des Matieres Premieres (CGEMP), 75 - Paris (France)

    2005-08-01

    Since the publication of the Roulet Report, Electricite de France (EDF), the French group is crossing tormented hours. Despite its good financial results in 2004 with a turnover of 46.9 Mds euros its debts are around 19.7 Mds euros and are mainly due to its international investments which were not all very profitable. The first source of concern remains the Latin America markets and more particularly the Brazilian one which recorded 1.6 Md euros of losses. The future of EDF investment in Brazil, through its acquisition of the distribution company, Light, is uncertain. Within a new electric power industry framework, after currency devaluation and a rationing, Light is now in a catastrophic financial situation. The last tariff revisions given by the Brazilian authorities and the economic characteristics of the concession put the distributor at the edge of the bankruptcy. This article presents the situation of EDF group and Light at the end of 2004. The main question is the future of the Brazilian distributor in general and more particularly within the French group EDF. (author)

  16. Hepatitis C virus prevalence and genotype distribution in Pakistan: Comprehensive review of recent data.

    Science.gov (United States)

    Umer, Muhammad; Iqbal, Mazhar

    2016-01-28

    Hepatitis C virus (HCV) is endemic in Pakistan and its burden is expected to increase in coming decades owing mainly to widespread use of unsafe medical procedures. The prevalence of HCV in Pakistan has previously been reviewed. However, the literature search conducted here revealed that at least 86 relevant studies have been produced since the publication of these systematic reviews. A revised updated analysis was therefore needed in order to integrate the fresh data. A systematic review of data published between 2010 and 2015 showed that HCV seroprevalence among the general adult Pakistani population is 6.8%, while active HCV infection was found in approximately 6% of the population. Studies included in this review have also shown extremely high HCV prevalence in rural and underdeveloped peri-urban areas (up to 25%), highlighting the need for an increased focus on this previously neglected socioeconomic stratum of the population. While a 2.45% seroprevalence among blood donors demands immediate measures to curtail the risk of transfusion transmitted HCV, a very high prevalence in patients attending hospitals with various non-liver disease related complaints (up to 30%) suggests a rise in the incidence of nosocomial HCV spread. HCV genotype 3a continues to be the most prevalent subtype infecting people in Pakistan (61.3%). However, recent years have witnessed an increase in the frequency of subtype 2a in certain geographical sub-regions within Pakistan. In Khyber Pakhtunkhwa and Sindh provinces, 2a was the second most prevalent genotype (17.3% and 11.3% respectively). While the changing frequency distribution of various genotypes demands an increased emphasis on research for novel therapeutic regimens, evidence of high nosocomial transmission calls for immediate measures aimed at ensuring safe medical practices.

  17. Chronic hepatitis C in Austria, 1992-2006: genotype distribution and demographic factors.

    Science.gov (United States)

    Maieron, A; Metz-Gercek, S; Hackl, F; Luger, C; Ziachehabi, A; Strauss, R; Schöfl, R; Mittermayer, H

    2010-02-25

    Chronic hepatitis C is a leading cause of end-stage liver disease and, with a worldwide prevalence of up to 3%, is a pandemic infectious disease. Austria, like most western European countries can be considered as a low prevalence country. This analysis aimed to assess the distribution of hepatitis C virus (HCV) genotypes in patients with chronic HCV infection in Upper Austria. Between September 1992 and December 2006, we identified 1,318 consecutive patients who tested positive for HCV RNA. Genotyping was routinely performed in 1,239 of the 1,318 patients, and in a subgroup of 617 patients data on the source of transmission were collected. Additionally we obtained data on liver histology and body mass index in a subsample of 273 of the 617 patients. Hepatitis C genotypes 1, 2, 3, 4, 6 and co-infections were found in 80.4%, 4.5%, 12.3%, 2.7%, 0.1% and 0.2% of the patients, respectively. There was a highly significant age difference in relation to gender at the time of diagnosis of chronic hepatitis C, with women being older than men (men: 45.0 years; women: 49.3 years; p<0.0001). The number of new cases of chronic hepatitis C decreased substantially over the last decade, but although risk factors for obtaining HCV are well established, we did not find a decrease in the age of first diagnosis. Besides consistent screening in defined risk groups it is important to raise awareness for risk factors for HCV acquisition and liver disease progression.

  18. Geographic distribution of phlebotomine sandfly species (Diptera: Psychodidae in Central-West Brazil

    Directory of Open Access Journals (Sweden)

    Paulo Silva de Almeida

    2015-06-01

    Full Text Available This study updates the geographic distributions of phlebotomine species in Central-West Brazil and analyses the climatic factors associated with their occurrence. The data were obtained from the entomology services of the state departments of health in Central-West Brazil, scientific collections and a literature review of articles from 1962-2014. Ecological niche models were produced for sandfly species with more than 20 occurrences using the Maxent algorithm and eight climate variables. In all, 2,803 phlebotomine records for 127 species were analysed. Nyssomyia whitmani,Evandromyia lenti and Lutzomyia longipalpiswere the species with the greatest number of records and were present in all the biomes in Central-West Brazil. The models, which were produced for 34 species, indicated that the Cerrado areas in the central and western regions of Central-West Brazil were climatically more suitable to sandflies. The variables with the greatest influence on the models were the temperature in the coldest months and the temperature seasonality. The results show that phlebotomine species in Central-West Brazil have different geographical distribution patterns and that climate conditions in essentially the entire region favour the occurrence of at least one Leishmania vector species, highlighting the need to maintain or intensify vector control and surveillance strategies.

  19. Geographic distribution of phlebotomine sandfly species (Diptera: Psychodidae) in Central-West Brazil.

    Science.gov (United States)

    Almeida, Paulo Silva de; Andrade, Andrey José de; Sciamarelli, Alan; Raizer, Josué; Menegatti, Jaqueline Aparecida; Hermes, Sandra Cristina Negreli Moreira; Carvalho, Maria do Socorro Laurentino de; Gurgel-Gonçalves, Rodrigo

    2015-06-01

    This study updates the geographic distributions of phlebotomine species in Central-West Brazil and analyses the climatic factors associated with their occurrence. The data were obtained from the entomology services of the state departments of health in Central-West Brazil, scientific collections and a literature review of articles from 1962-2014. Ecological niche models were produced for sandfly species with more than 20 occurrences using the Maxent algorithm and eight climate variables. In all, 2,803 phlebotomine records for 127 species were analysed. Nyssomyia whitmani, Evandromyia lenti and Lutzomyia longipalpis were the species with the greatest number of records and were present in all the biomes in Central-West Brazil. The models, which were produced for 34 species, indicated that the Cerrado areas in the central and western regions of Central-West Brazil were climatically more suitable to sandflies. The variables with the greatest influence on the models were the temperature in the coldest months and the temperature seasonality. The results show that phlebotomine species in Central-West Brazil have different geographical distribution patterns and that climate conditions in essentially the entire region favour the occurrence of at least one Leishmania vector species, highlighting the need to maintain or intensify vector control and surveillance strategies.

  20. Dry season distribution of hydroids in a small tropical estuary, Pernambuco, Brazil

    NARCIS (Netherlands)

    Calder, D.R.; Maÿal, E.M.

    1998-01-01

    Hydroid distribution patterns along a horizontal ecocline in the Rio Formoso/Rio Ariquindá/Rio Porto Alegre system, a small and seasonally poikilohaline estuary on the tropical northeast coast of Brazil, were investigated. Collecting was undertaken during the dry season, in November 1993, by diving

  1. Distribution of nuclear medicine service in Brazil; Distribuicao do servico de medicina nuclear no Brasil

    Energy Technology Data Exchange (ETDEWEB)

    Silva, Ana Carolina Costa da; Duarte, Alessandro; Santos, Bianca Maciel dos [Faculdade Metodo de Sao Paulo (FAMESP), Sao Paulo, SP (Brazil)

    2011-10-26

    The Brazil does not posses a good distribution of nuclear medicine service por all his territory. This paper shows the difference among country regions as far the number of clinics of nuclear medicine as is concerning, and also doctors licensed in the area and radioprotection supervisors, both licensed by the Brazilian Nuclear Energy Commission (CNEN)

  2. Genotype distribution and the relative risk factors for human papillomavirus in Urumqi, China.

    Science.gov (United States)

    Chen, Zhifang; Meng, Wei; DU, Rong; Zhu, Yuejie; Zhang, Yi; Ding, Yan

    2013-07-01

    The aim of this study was to investigate human papillomavirus (HPV) infection and HPV genotype distributions in Urumqi, Xinjiang, China. The related risk factors for high-risk HPV infection was also analyzed. A stratified cluster sampling method was used for the population-based cervical cancer screening of women aged 18-69 years in the Urumqi Saybagh district. Exfoliated cervical cell samples were collected for liquid-based cytology detection and HPV genotyping DNA microarrays. Education level, number of sexual partners, condom use and occupation were used in the multivariate analysis model. The HPV infection rate of women working in service industries was significantly higher compared with those of white-collar workers, community residents and migrant workers. The 35-44-year-old migrant worker group had the highest HPV infection rates among all of the groups in the three different age ranges. The number of marriages, education level, smoking history, number of abortions, use of condoms, number of sexual partners, number of sexual partners in the past five years and occupation were all associated with female HPV infection rate (P<0.05). The 35-44-year-old women were the age group with the highest HPV infection rate. The HPV infection rate of females in service industries was the highest. Education level and condom use were protective factors of HPV infection, while the number of sexual partners and occupation were risk factors for HPV infection.

  3. Hepatitis B virus genotype and subgenotype prevalence and distribution in Montenegro.

    Science.gov (United States)

    Vratnica, Zoran; Zehender, Gianguglielmo; Ebranati, Erika; Sorrentino, Chiara; Lai, Alessia; Vujošević, Danijela; Veo, Carla; Lo Presti, Alessandra; Cella, Eleonora; Giovanetti, Marta; Laušević, Dragan; Galli, Massimo; Ciccozzi, Massimo; Mugoša, Boban

    2015-05-01

    The Mediterranean area and the Balkans in particular show the highest level of genetic heterogeneity of HBV in Europe. Data about the circulation of HBV genotypes in Montenegro are lacking. It was studied the prevalence and distribution of HBV genot/subgenotypes in a total of 150 HBV infected patients living in Montenegro. Phylogenetic analysis of 136 successfully amplified P sequences showed a high degree of genetic heterogeneity of HBV in Montenegro. Subgenotype D2 (36.8%) and D3 (32.3%) were the most prevalent, followed by genotype A (subgenotype A2 in all of the cases-19.8%). Eight patients were infected with recombinant strains. HBV-D1 which is the most spread HBV subgenotype in the south-eastern Mediterranean countries, seems to be relatively rare in Montenegro, suggesting a penetration of HBV more probably from North-East or West than from Eastern Mediterranean countries. The relatively different prevalence of D3 and A2 among subjects infected through sexual route, seems to confirm the association of these subgenotypes with different route of transmissions (mainly parenteral for D3 and mainly sexual for A2) even in Montenegro. The low prevalence of D2 among children and its absence in perinatal transmission, suggests that this subgenotype circulated prevalently in the past. If this is due to changes in the most prevalent way of transmission and in the recent different contacts of Montenegro with other European countries, it remains to be established by other larger studies.

  4. Distribution of Hepatitis C Virus Genotypes in the South Marmara Region

    Directory of Open Access Journals (Sweden)

    Harun Agca

    2014-03-01

    Full Text Available Aim: Hepatitis C virus (HCV is an important caustive agent of hepatitis, cirrhosis and hepatocellular carcinoma both in our country and the world. Prognosis and response to treatment is related with the genotype of HCV which has six genotypes and over a hundred quasispecies. Knowing the HCV genotype is also important for epidemiological data. In this study we aimed to investigate the HCV genotypes of samples sent to Uludag University Hospital Microbiology Laboratory which is the reference centre in the South Marmara Region. Material and Method: This study was done retrospectively to analyse the HCV patients%u2019 sera sent to our laboratory between July 2010and December 2012 for HCV genotyping. Artus HCV QS-RGQ PCR kit (Qiagene,Hilden, Germany was used in Rotor-Gene Q (Qiagene, Hilden Germany for detection of HCV RNA. HCV RNA positive samples of patients%u2019 sera were were used for genotyping by the Linear Array HCV genotyping test (Roche, NJ, USA.Results: 214 (92.6 % of total 231 patients included in the study were genotype 1, one (0.4 % was genotype 2, nine (3.9 % were genotype 3 and, seven (3.4 % were found genotype 4. Three of genotype 3 patients were of foreign nationality, two were born abroad and one of the genotype 4 patients were born abroad. Discussion: Concordant with our country data the most frequent genotype was 1, genotype 2 was seen in patients especially related with foreign countries and genotype 4 was seen rare. The importance of genotype 1, which is seen more frequent in our country and region is; resistance to antiviral treatment and prolonged treatment duration in chronic hepatitis C patients.

  5. New records, distribution and status of six seabird species in Brazil

    Directory of Open Access Journals (Sweden)

    Rafael Antunes Dias

    2010-12-01

    Full Text Available Distribution records of poorly-known species are currently the most explored theme in the Brazilian seabird literature. If properly evaluated, this kind of information can improve our knowledge on distribution, migration and status of occurrence of these species. In this note we present new records for six species of poorly-known seabirds in the Brazilian coast, reviewing distribution records and defining their status of occurrence in the country. We consider Chionis albus (Gmelin, 1789 a pseudo-vagrant in Brazil and define its status as a scarce seasonal visitor from southern South America. We present the first records of Leucophaeus atricilla (Linnaeus, 1758 for Trindade Island, and of Leucophaeus pipixcan (Wagler, 1831 for the state of Rio Grande do Sul, and determined that the former is a vagrant in eastern Brazil and the latter a vagrant across the country. Anous stolidus (Linnaeus, 1758 is a vagrant in southernmost Brazil. We were unable to determine if records of Chlidonias niger (Linnaeus, 1758 for Brazil and southern South America refer to vagrancy or pseudo-vagrancy. Additionally, we verified the occurrence of breeding individuals of Anous minutus Boie, 1844 on Martin Vaz Island and confirmed that there is no evidence of breeding on neighboring Trindade Island.

  6. Brazil.

    Science.gov (United States)

    1985-09-01

    Brazil's population in 1985 was 135 million, with an annual growth rate (1982) of 2.3%. The infant mortality rate (1981) was 92/1000, and life expectancy stood at 62.8 years. 76% of the adult population was literate. Brazil is a federal republic which recognizes 5 political parties. 55% of the population is Portuguese, Italian, German, Japanese, African, or American Indian; 38% is white. Of the work force of 50 million, 35% are engaged in agriculture, 25% work in industry, and 40% are employed in services. Trade union membership totals 6 million. The agricultural sector accounts for 12% of the GDP and 40% of exports. Brazil is largely self-sufficient in terms of food. The GDP was US$218 billion in 1984, with an annual growth rate of 4%. Per capita GDP was US$1645. Brazil's power, transportation, and communications systems have improved greatly in recent years, providing a base for economic development. High inflation rates have been a persistent problem.

  7. Genotypes of Candida albicans isolated from healthy individuals and their distribution in patients with oral candidiasis.

    Science.gov (United States)

    Takagi, Yuki; Fukano, Hideo; Shimozato, Kazuo; Tanaka, Reiko; Horii, Toshinobu; Kawamoto, Fumihiko; Kanbe, Toshio

    2013-12-01

    For the study of Candida albicans genotypes involved in development of candidiasis, Candida albicans isolates were collected from healthy volunteers and patients with oral candidiasis and genotyped on the basis of 25S rDNA and microsatellite polymorphisms. In the microsatellite analysis using two microsatellite markers (CDC3 and CAI), 63 healthy volunteer isolates were classified into 35 genotypes (allelic relations to CDC3 alleles 1:2/CAI alleles 1:2), among which genotypes II (115:119/23:23), III (115:123/18:27), and V (123:127/32:41) were found at frequencies of 12.7%, 7.9%, and 7.9%, respectively. In 68 oral candidiasis isolates classified into 39 genotypes, genotypes II and III were identified in 4.4% and 20.6% of the isolates, respectively. The frequency of genotype III was higher in the candidiasis isolates than in the healthy isolates (p oral candidiasis.

  8. Low occurrence of occult hepatitis B virus infection and high frequency of hepatitis C virus genotype 3 in hepatocellular carcinoma in Brazil

    Directory of Open Access Journals (Sweden)

    R.S.M. Alencar

    2008-03-01

    Full Text Available Occult hepatitis B virus (HBV infection has been reported among patients with hepatitis C virus (HCV infection and hepatocellular carcinoma (HCC. Our aim was to evaluate the presence of occult HBV infection in patients with HCV-related liver cirrhosis (LC with or without HCC in São Paulo, Brazil. Serum and liver tissue samples from 50 hepatitis B surface antigen-negative patients with HCV-related LC who underwent liver transplantation at the University of São Paulo School of Medicine Hospital from 1993 to 2004 were divided into groups with LC only (N = 33 and with LC plus HCC (N = 17. HBV DNA was assayed for serum and paraffin-embedded liver tissue (tumoral and non-tumoral using real time PCR and only 1 case with HCC had HBV DNA-positive serum. All liver samples were negative. HCV genotype 3 was detected in 17/39 (43.7% cases. In conclusion, using a sensitive real time PCR directed to detect HBV variants circulating in Brazil, occult hepatitis B infection was not found among HCV-positive cirrhotic patients and was rarely found among HCV-positive HCC patients. These results are probably related to the low prevalence of HBV infection in our population. Furthermore, we have also shown that HCV genotype 3 is frequently found in Brazilian cirrhotic patients, particularly when they also have HCC. More studies involving a large number of cases should be carried out to confirm these data and to further characterize Brazilian HCV genotype isolates to elucidate genetic features that might be related to its carcinogenic potential.

  9. Distribution of periphytic algae in wetlands (Palm swamps, Cerrado, Brazil

    Directory of Open Access Journals (Sweden)

    B Dunck

    Full Text Available The distribution of periphytic algae communities depends on various factors such as type of substrate, level of disturbance, nutrient availability and light. According to the prediction that impacts of anthropogenic activity provide changes in environmental characteristics, making impacted Palm swamps related to environmental changes such as deforestation and higher loads of nutrients via allochthonous, the hypothesis tested was: impacted Palm swamps have higher richness, density, biomass and biovolume of epiphytic algae. We evaluated the distribution and structure of epiphytic algae communities in 23 Palm swamps of Goiás State under different environmental impacts. The community structure attributes here analyzed were composition, richness, density, biomass and biovolume. This study revealed the importance of the environment on the distribution and structuration of algal communities, relating the higher values of richness, biomass and biovolume with impacted environments. Acidic waters and high concentration of silica were important factors in this study. Altogether 200 taxa were identified, and the zygnemaphycea was the group most representative in richness and biovolume, whereas the diatoms, in density of studied epiphyton. Impacted Palm swamps in agricultural area presented two indicator species, Gomphonema lagenula Kützing and Oedogonium sp, both related to mesotrophic to eutrophic conditions for total nitrogen concentrations of these environments.

  10. Distribution of periphytic algae in wetlands (Palm swamps, Cerrado), Brazil.

    Science.gov (United States)

    Dunck, B; Nogueira, I S; Felisberto, S A

    2013-05-01

    The distribution of periphytic algae communities depends on various factors such as type of substrate, level of disturbance, nutrient availability and light. According to the prediction that impacts of anthropogenic activity provide changes in environmental characteristics, making impacted Palm swamps related to environmental changes such as deforestation and higher loads of nutrients via allochthonous, the hypothesis tested was: impacted Palm swamps have higher richness, density, biomass and biovolume of epiphytic algae. We evaluated the distribution and structure of epiphytic algae communities in 23 Palm swamps of Goiás State under different environmental impacts. The community structure attributes here analyzed were composition, richness, density, biomass and biovolume. This study revealed the importance of the environment on the distribution and structuration of algal communities, relating the higher values of richness, biomass and biovolume with impacted environments. Acidic waters and high concentration of silica were important factors in this study. Altogether 200 taxa were identified, and the zygnemaphycea was the group most representative in richness and biovolume, whereas the diatoms, in density of studied epiphyton. Impacted Palm swamps in agricultural area presented two indicator species, Gomphonema lagenula Kützing and Oedogonium sp, both related to mesotrophic to eutrophic conditions for total nitrogen concentrations of these environments.

  11. Spatial distribution of river dolphins, Inia geoffrensis (Iniidae), in the Araguaia River (central Brazil)

    OpenAIRE

    ARAÚJO, CLARYANA COSTA; Vera Maria Ferreira da Silva

    2014-01-01

    This study aimed to characterize the distribution of botos, Inia geoffrensis, along a 530 km stretch in the middle reaches of the Araguaia River (central Brazil). Data collection was conducted in May (lowering water season) and September (dry season) of 2009. The location and group size of botos were recorded, and the relative density was calculated. The river was divided into nine areas according to geomorphological features; these areas were later grouped into two (low and high) levels of s...

  12. Synopsis of Paxillus MacLeay, 1819 (Coleoptera: Passalidae): distributional records and descriptions of four new species from Brazil.

    Science.gov (United States)

    Mattos, Ingrid; Mermudes, José Ricardo M

    2013-01-01

    Paxillus MacLeay, 1819 (Coleoptera: Passalidae) is redescribed, with new distributional records and descriptions of four species from Brazil. Paxillus reyesi new species is characterized by the first antennomere of antennal club reduced, slightly longer than half of the second antennomere; mesosternal scar straight, wide and deep. Paxillus chapadensis new species from the Chapada dos Guimarães (Mato Grosso, Brazil) has prostenal process centrally impressed with an opaque depression; and the scape of the antenna with a subapical dorsal spine, shallow ventral depression, and few erect setae. Paxillus manausensis new species from Manaus (Amazonas, Brazil) has high frontal ridges; mid-frontal tubercles high, acuminate and larger than the internal tubercles; and the central tubercle short. Paxillus uaupesensis new species from Uaupes (Amazonas, Brazil) has the mesosternal scar opaque, elongate and depressed; and the scutellum depressed. Diagnostic redescriptions and illustrations of known species from Brazil, a key to all known species, and a checklist with distributional data are provided.

  13. Spatial distribution of Biomphalaria spp., the intermediate host snails of Schistosoma mansoni, in Brazil.

    Science.gov (United States)

    Scholte, Ronaldo G C; Carvalho, Omar S; Malone, John B; Utzinger, Jürg; Vounatsou, Penelope

    2012-09-01

    Schistosomiasis mansoni remains an important parasitic disease of man, endemic in large parts of sub-Saharan Africa, the Middle East, South America and the Caribbean. The aetiological agent is the trematode Schistosoma mansoni, whereas aquatic snails of the genus Biomphalaria act as intermediate hosts in the parasite life cycle. In Brazil, the distribution of Biomphalaria spp. is closely associated with the occurrence of schistosomiasis. The purpose of this study was to map and predict the spatial distribution of the intermediate host snails of S. mansoni across Brazil. We assembled snail "presenceonly" data and used a maximum entropy approach, along with climatic and environmental variables to produce predictive risk maps. We identified a series of risk factors that govern the distribution of Biomphalaria snails. We find that high-risk areas for B. glabrata are concentrated in the regions of Northeast and Southeast and the northern part of the South region. B. straminea are found in the Northeast and Southeast regions, and B. tenagophila are concentrated in the Southeast and South regions. Our findings confirm that the presence of the intermediate host snails is correlated with the occurrence of schistosomiasis mansoni. The generated risk maps of intermediate host snails might assist the national control programme for spatial targeting of control interventions and to ultimately move towards schistosomiasis elimination in Brazil.

  14. The diversity and distribution of Heliconia (Heliconiaceae) in Brazil A diversidade e distribuição de Heliconia (Heliconiaceae)

    OpenAIRE

    John Kress

    1990-01-01

    A review of the phylogenetic relationships of the Zingiberales is presented and the distribution patterns and diversity of Heliconia are discussed. Sixty-five species names have been applied to the heliconias that occur in Brazil. Of these 65 names, 28 are generally recognized synonyms. Of the remaining 37 species of Brazilian Heliconia, some controversy exists over the taxonomic status of at least eight. Two primary areas of distribution of species of Heliconia exist in Brazil: the Amazon ba...

  15. Temporal changes in HCV genotype distribution in three different high risk populations in San Francisco, California

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    Evans Jennifer

    2011-08-01

    Full Text Available Abstract Background Hepatitis C virus (HCV genotype (GT has become an important measure in the diagnosis and monitoring of HCV infection treatment. In the United States (U.S. HCV GT 1 is reported as the most common infecting GT among chronically infected patients. In Europe, however, recent studies have suggested that the epidemiology of HCV GTs is changing. Methods We assessed HCV GT distribution in 460 patients from three HCV-infected high risk populations in San Francisco, and examined patterns by birth cohort to assess temporal trends. Multiple logistic regression was used to assess factors independently associated with GT 1 infection compared to other GTs (2, 3, and 4. Results Overall, GT 1 was predominant (72.4%, however younger injection drug users (IDU had a lower proportion of GT 1 infections (54.7% compared to older IDU and HIV-infected patients (80.5% and 76.6%, respectively. Analysis by birth cohort showed increasing proportions of non-GT 1 infections associated with year of birth: birth before 1970 was independently associated with higher adjusted odds of GT 1: AOR 2.03 (95% CI: 1.23, 3.34. African-Americans as compared to whites also had higher adjusted odds of GT 1 infection (AOR: 3.37; 95% CI: 1.89, 5.99. Conclusions Although, HCV GT 1 remains the most prevalent GT, especially among older groups, changes in GT distribution could have significant implications for how HCV might be controlled on a population level and treated on an individual level.

  16. Spatial distribution and abundance of nonindigenous coral genus Tubastraea (Cnidaria, Scleractinia around Ilha Grande, Brazil

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    A. F. Paula

    Full Text Available The distribution and abundance of azooxanthellate coral Tubastraea Lesson, 1829 were examined at different depths and their slope preference was measured on rocky shores on Ilha Grande, Brazil. Tubastraea is an ahermatypic scleractinian nonindigenous to Brazil, which probably arrived on a ship's hull or oil platform in the late 1980's. The exotic coral was found along a great geographic range of the Canal Central of Ilha Grande, extending over a distance of 25 km. The abundance of Tubastraea was quantified by depth, using three different sampling methods: colony density, visual estimation and intercept points (100 for percentage of cover. Tubastraea showed ample tolerance to temperature and desiccation since it was found more abundantly in very shallow waters (0.1-0.5 m, despite the fact that hard substratum is available at greater depths at all the stations sampled. At most sites, 1 to 5 colonies per 0.25 m² were found most frequently, but occasionally more than 50 colonies were found per 0.25 m², indicating a somewhat gregarious spatial distribution for this coral. The coral Tubastraea was found to occupy slopes of every possible angle in the Canal Central of Ilha Grande, but more colonies were found occupying slopes of 80 to 100°. Therefore, its insensitivity to angles of recruitment and its tolerance for different depths makes it an organism with great ecological tolerance, with a potential to colonize new areas and increase its current range in Brazil's coastal waters.

  17. Geographic distribution model for Mabuya agmosticha (Squamata: Scincidae in northeastern Brazil

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    Raul F.D. Sales

    2015-02-01

    Full Text Available The Neotropical lizard Mabuya agmosticha Rodrigues, 2000 is a habitat-specialist of thorny bromeliads in rocky outcrops of northeastern Brazil. Its distribution in the Caatinga Domain is most likely relictual. In recent years, new surveys conducted in northeastern Brazil have revealed new records of the species in the Caatinga and also in the Atlantic Forest Domain. In this study, we add four new records for M. agmosticha, extending its known geographic range in the states of Rio Grande do Norte and Paraíba. In addition, we investigated the potential geographical distribution of the species using ecological niche modeling (ENM, which combines the available occurrence records with environmental variables. Our model revealed a continuous range of areas with suitable climatic conditions for the species, from the state of Rio Grande do Norte to the northeast portion of the state of Bahia, plus some relictual distribution spots, mainly in the states of Bahia, Pernambuco, Ceará and western Rio Grande do Norte. Based on the model, we suggest that the distribution of M. agmosticha is continuous on a large geographic scale. On a smaller spatial scale, however, it is clear that its distribution is clumped, reflecting its specialist habits associated with rupicolous bromeliads.

  18. Spatial distribution of mortality by diseases of the respiratory system in Brazil.

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    Felipe Bitencourt de Oliveira

    2009-12-01

    Full Text Available In the literature, consistent evidences relating the increase in the incidence of diseases of the respiratory system and the intensification of air pollution were described, therefore, the investigation of the mortality by those diseases can be useful in public health programs. In the present study the spatial distribution of mortality by diseases of the respiratory system in Brazil was investigated, based on data on deaths registered in the Information System (SIM of the Ministry of Health. Bayesian statistical method was applied. The results indicate that, between 2003 and 2007, the higher rates of deaths by those diseases were found in the states of RS, SP, AC, RJ, GO, PR, MG and SC, and from 54 to 56% of all victims of those diseases registered in Brazil were men.

  19. HCV Antibody Response and Genotype Distribution in Different Areas and Races of China

    OpenAIRE

    Leili Jia, Jiyun Yu, Hongbin Song, Xuelin Liu, Weina Ma, Yuanyong Xu, Chuanfu Zhang, Shicun Dong, Qiao Li

    2009-01-01

    Hepatitis C virus (HCV) heterogeneity accounts for the failure of effective vaccine development and the lack of successful anti-viral therapy in some patients. Little is known about the immune response to HCV peptides and the region or race specific genotypes in China. The objective of this study was to characterize HCV antibody immune response to HCV peptides and HCV genotypes in different regions and races of China. A total of 363 serum samples were collected from HCV carriers in 6 regions ...

  20. Genotype-Phenotype Correlations in CYP1B1-Associated Primary Congenital Glaucoma Patients Representing Two Large Cohorts from India and Brazil.

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    Mônica Barbosa de Melo

    Full Text Available Primary congenital glaucoma (PCG, occurs due to the developmental defects in the trabecular meshwork and anterior chamber angle in children. PCG exhibits genetic heterogeneity and the CYP1B1 gene has been widely implicated worldwide. Despite the diverse mutation spectra, the clinical implications of these mutations are yet unclear. The present study attempted to delineate the clinical profile of PCG in the background of CYP1B1 mutations from a large cohort of 901 subjects from India (n=601 and Brazil (n=300.Genotype-phenotype correlations was undertaken on clinically well characterized PCG cases from India (n=301 and Brazil (n=150 to assess the contributions of CYP1B1 mutation on a set of demographic and clinical parameters. The demographic (gender, and history of consanguinity and quantitative clinical (presenting intraocular pressure [IOP] and corneal diameter [CD] parameters were considered as binary and continuous variables, respectively, for PCG patients in the background of the overall mutation spectra and also with respect to the prevalent mutations in India (R368H and Brazil (4340delG. All these variables were fitted in a multivariate logistic regression model using the Akaike Information Criterion (AIC to estimate the adjusted odds ratio (OR using the R software (version 2.14.1.The overall mutation spectrum were similar across the Indian and Brazilian PCG cases, despite significantly higher number of homozygous mutations in the former (p=0.024 and compound heterozygous mutations in the later (p=0.012. A wide allelic heterogeneity was observed and only 6 mutations were infrequently shared between these two populations. The adjusted ORs for the binary (demographic and continuous (clinical variables did not indicate any susceptibility to the observed mutations (p>0.05.The present study demonstrated a lack of genotype-phenotype correlation of the demographic and clinical traits to CYP1B1 mutations in PCG at presentation. However, the

  1. Chronic Hepatitis C treatment for genotype 2 or 3 in Brazil: cost effectiveness analysis of peginterferon plus ribavirin as first choice treatment

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    Carine Raquel Blatt

    2014-04-01

    Full Text Available Brazilian Guidelines to HCV treatment (2007 recommended that the first choice treatment for patients with chronic hepatitis C (CHC and genotype 2 or 3 is interferon alpha (IFN plus ribavirin (RBV for 24 weeks. The aim of this study is compare the cost and effectiveness to Hepatitis C treatment in patients with genotype 2 or 3 of peginterferon alpha (PEG as the first choice of treatment within PEG for those that do not respond to IFN. The target population is CHC patients with genotype 2 or 3 in Brazil. The interventions are: PEG-SEC (first IFN plus RBV for 24 weeks, after, for non-responders and relapsers subsequently PEG plus RBV for 48 weeks; PEG-FIRST24 (PEG+RBV for 24 weeks. The type of the study is cost-effectiveness analysis. The data sources are: Effectiveness data from meta-analysis conducted on the Brazilian population. Treatment cost from Brazilian micro costing study is converted into USD (2010. The perspective is the Public Health System. The outcome measurements are Sustained Viral Response (SVR and costs. PEG-FIRST24 (SVR: 87.8%, costs: USD 8,338.27 was more effective and more costly than PEG-SEC (SVR: 79.2%, costs: USD 5,852.99. The sensitivity analyses are: When SVR rates with IFN was less than 30% PEG-FIRST is dominant. On the other hand, when SVR with IFN was more then 75% PEG-SEC is dominant (SVR=88.2% and costs USD $ 3,753.00. PEG-SEC is also dominant when SVR to PEG24 weeks was less than 54%. In the Brazilian context, PEG-FIRST is more effective and more expensive than PEG-SEC. PEG-SEC could be dominant when rates of IFN therapy are higher than 75% or rates of PEG24 therapy are lower than 54%.

  2. Genetic diversity and phylogeography of highly zoonotic Echinococcus granulosus genotype G1 in the Americas (Argentina, Brazil, Chile and Mexico) based on 8279bp of mtDNA.

    Science.gov (United States)

    Laurimäe, Teivi; Kinkar, Liina; Andresiuk, Vanessa; Haag, Karen Luisa; Ponce-Gordo, Francisco; Acosta-Jamett, Gerardo; Garate, Teresa; Gonzàlez, Luis Miguel; Saarma, Urmas

    2016-11-01

    Echinococcus granulosus is a taeniid cestode and the etiological agent of an infectious zoonotic disease known as cystic echinococcosis (CE) or hydatid disease. CE is a serious public health concern in many parts of the world, including the Americas, where it is highly endemic in many regions. Echinococcus granulosus displays high intraspecific genetic variability and is divided into multiple genotypes (G1-G8, G10) with differences in their biology and etiology. Of these, genotype G1 is responsible for the majority of human and livestock infections and has the broadest host spectrum. However, despite the high significance to the public and livestock health, the data on genetic variability and regional genetic differences of genotype G1 in America are scarce. The aim of this study was to evaluate the genetic variability and phylogeography of G1 in several countries in America by sequencing a large portion of the mitochondrial genome. We analysed 8279bp of mtDNA for 52 E. granulosus G1 samples from sheep, cattle and pigs collected in Argentina, Brazil, Chile and Mexico, covering majority of countries in the Americas where G1 has been reported. The phylogenetic network revealed 29 haplotypes and a high haplotype diversity (Hd=0.903). The absence of phylogeographic segregation between different regions in America suggests the importance of animal transportation in shaping the genetic structure of E. granulosus G1. In addition, our study revealed many highly divergent haplotypes, indicating a long and complex evolutionary history of E. granulosus G1 in the Americas.

  3. Distribution of hepatitis B virus genotypes in patients with chronic hepatitis B in Turkey

    Institute of Scientific and Technical Information of China (English)

    Mustafa Sunbul; Hakan Leblebicioglu

    2005-01-01

    AIM: Hepatitis B virus (HBV) strains isolated worldwide has been classified into eight genomic groups deduced from genome comparisons and designated as genotypes A to H. We aimed to investigate prevalence of HBV genotypes and subtypes in Turkey.METHODS: A total of 88 chronic hepatitis B (CHB) patients from 15 hospitals throughout the country were included.Patients who were HBsAg positive in serum at least for 6 mo, who had HBV-DNA in serum and elevation of ALT levels more than two times upper limit of normal, and who had percutaneous liver biopsy within 6 mo were included. Genotyping of HBV was done by restriction fragment length polymorphism (RFLP). The patients received subcutaneous 9 MU interferon-α 2a thrice a week for a period of 6 mo.RESULTS: Genotype D was detected in 78 of 88 (88.7%)patients, however, genotyping failed in two patients (2.3%),while no product was obtained in eight (9.0%) patients.Regarding subtypes, D2 was more prevalent (67 patients between 78% and 85.9%) followed by subtype D2+deletion (seven patients of 78 or 8.9%), subtype D1 (three patients of 78% or 3.9%) and subtype D3 (one patient of 78% or 1.3%). Thirty-three patients (37.5%) were HBeAg positive compared to 55 (62.5%) anti-HBe positive patients. The endpoint for the viral response of HBeAg positive patients was 27.2%, while it was found 52.7% in HBeAg negative patients (P<0.05). Long-term persistent viral response was 29.5% for all patients.CONCLUSION: This multi-center study indicates that the predominant genotype with CHB patients in Turkey like in other Mediterranean countries is genotype D.

  4. Diversity and distribution of extra-floral nectaries in the cerrado savanna vegetation of Brazil.

    Science.gov (United States)

    Boudouris, John; Queenborough, Simon A

    2013-01-01

    Aim. Throughout evolutionary history, plants and animals have evolved alongside one another. This is especially apparent when considering mutualistic relationships such as between plants with extra-floral nectaries (EFNs, glands on leaves or stems that secrete nectar) and the ants that visit them. Ants are attracted by the nectar and then protect the plant against destructive herbivores. The distribution of these plants is of particular interest, because it can provide insights into the evolutionary history of this unique trait and the plants that possess it. In this study, we investigated factors driving the distribution of woody plants with EFNs in the cerrado vegetation of Brazil. Location. Brazil Methods. We used a database detailing the incidence of 849 plant species at 367 cerrado sites throughout Brazil. We determined which species possessed EFNs and mapped their distributions. We tested for correlations between the proportion of EFN species at each site and (i) three environmental variables (mean annual temperature, mean annual precipitation, and the precipitation in the driest quarter of the year), (ii) a broad soil classification, and (iii) the total species diversity of each site. Results. We found a wide range in the proportion of EFN species at any one site (0-57%). However, whilst low diversity sites had wide variation in the number of EFN species, high diversity sites all had few EFN species. The proportion of EFN species was positively correlated with absolute latitude and negatively correlated with longitude. When accounting for total species diversity, the proportion of EFN species per site was negatively correlated with precipitation in the driest quarter of the year and positively correlated with temperature range. Main Conclusions. These results suggest either that herbivore pressure may be lower in drier sites, or that ants are not as dominant in these locations, or that plant lineages at these sites were unable to evolve EFNs.

  5. Distribution of prokaryotic organisms in a tropical estuary influenced by sugar cane agriculture in northeast Brazil

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    Lars Wolf

    2010-12-01

    Full Text Available In a joint Brazilian-German case study, distribution patterns of microorganisms were compared with environmental variables in the tropical coastal Manguaba lagoon in northeast Brazil, which is situated downstream of several sugar cane processing plants . 16S rDNA and 16S rRNA single strand conformation polymorphism (SSCP gene fingerprinting were used to follow the composition and distribution of microorganisms throughout the salinity gradient of the lagoon. Potentially abundant microorganisms were identified by sequencing representative SSCP bands. It could be demonstrated that the distribution of microbes was in close relation to the physico-chemical environmental settings and followed a common scheme. In the in- and outlet areas of the lagoon rather transient microbial communities were found, whereas in the central part a stable, diverse community was encountered, that due to the long residence time of the water, had ample time for development and adaptation.

  6. Sentinel phenotype for rubella embryopathy: time-space distribution in Brazil

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    Iêda Maria Orioli

    2011-10-01

    Full Text Available The dyad comprising eye anomalies and congenital heart defects in the same newborn has been proposed as the best sentinel phenotype for the early detection of rubella embryopathy. Time-space birth prevalence distributions of the eye-heart dyad were described in 36 Brazilian hospitals from the Latin-American Collaborative Study of Congenital Anomalies - ECLAMC network, for the period 1994-2008. Seventy dyad cases observed among 554,531 births showed seasonal variation (Χ2 = 5.84; p < 0.05, suggesting an environmental etiology, with an increase in cases in October-March and acrophase in December. The secular distribution of dyad prevalence rates was consistent with the distribution of rubella cases in Brazil, showing a decrease from 1994 to 2004, followed by an increase until 2008. Two geographic clusters were identified, one with high and the other with low dyad prevalence. In the high prevalence cluster, a secular increase was observed, starting in 1999, matching the rubella epidemic waves observed in Brazil in 1998-2000 and 2006.

  7. Seasonal distribution of aliphatic hydrocarbons in the Vaza Barris Estuarine System, Sergipe, Brazil.

    Science.gov (United States)

    Barbosa, José Carlos S; Santos, Lukas G G V; Sant'Anna, Mércia V S; Souza, Michel R R; Damasceno, Flaviana C; Alexandre, Marcelo R

    2016-03-15

    The seasonal assessment of anthropogenic activities in the Vaza Barris estuarine river system, located in the Sergipe state, northeastern Brazil, was performed using the aliphatic hydrocarbon distribution. The aliphatic hydrocarbon and isoprenoid (Pristane and Phytane) concentrations ranged between 0.19 μg g(-1) and 8.5 μg g(-1) of dry weight. Data were analyzed using Kruskal-Wallis test, with significance level set at p n-alkanes/n-C16, Low Molecular Weight/High Molecular Weight ratio (LMW/HMW) and Terrigenous to Aquatic Ratio (TAR) suggested biogenic input of aliphatic hydrocarbons for most samples, with significant contribution of higher plants.

  8. Distribution of Acanthamoeba Genotypes Isolated from Recreational and Therapeutic Geothermal Water Sources in Southwestern Iran.

    Science.gov (United States)

    Niyyati, Maryam; Saberi, Reza; Latifi, Alireza; Lasjerdi, Zohreh

    2016-01-01

    A comprehensive survey was conducted along 10 km of geothermal rivers in southwestern Iran. A total of 40 water samples were tested for the presence of Acanthamoeba spp., and genotypes were determined by targeting the diagnostic fragment 3 region of the 18S rRNA gene. The pathogenic potential of all positive isolates was also identified using tolerance ability test. High occurrences of Acanthamoeba (50%) were detected in the sampling areas. Based on sequencing analysis, isolates belonging to T4 (93.7%) and T2 (6.25%) genotypes were reported. Thermo- and osmotolerance tests revealed that five strains are highly pathogenic. Since every collection site of this study was associated with high human activity, posting of warning signs, monitoring of recreational water sources, and awareness of high-risk people are of utmost importance. To the best of our knowledge, the present research is the first to report T2 genotype from geothermal water sources in Iran.

  9. Desmanthus GENOTYPES

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    JOSÉ HENRIQUE DE ALBUQUERQUE RANGEL

    2015-01-01

    Full Text Available Desmanthus is a genus of forage legumes with potential to improve pastures and livestock produc-tion on clay soils of dry tropical and subtropical regions such as the existing in Brazil and Australia. Despite this patterns of natural or enforced after-ripening of Desmanthus seeds have not been well established. Four year old seed banks of nine Desmanthus genotypes at James Cook University were accessed for their patterns of seed softe-ning in response to a range of temperatures. Persistent seed banks were found to exist under all of the studied ge-notypes. The largest seeds banks were found in the genotypes CPI 78373 and CPI 78382 and the smallest in the genotypes CPI’s 37143, 67643, and 83563. An increase in the percentage of softened seeds was correlated with higher temperatures, in two patterns of response: in some accessions seeds were not significantly affected by tempe-ratures below 80º C; and in others, seeds become soft when temperature rose to as little as 60 ºC. At 80 °C the heat started to depress germination. High seed production of Desmanthus associated with dependence of seeds on eleva-ted temperatures to softening can be a very important strategy for plants to survive in dry tropical regions.

  10. Rotavirus genotype distribution during the pre-vaccine period in Bolivia: 2007–2008

    Science.gov (United States)

    Rivera, Rosario; Forney, Kristen; Castro, Maria René; Rebolledo, Paulina A.; Mamani, Nataniel; Patzi, Maritza; Halkyer, Percy; Leon, Juan S.; Iñiguez, Volga

    2013-01-01

    Summary Objectives Rotavirus is the most important etiology of severe diarrhea in Bolivia. The monovalent attenuated human oral rotavirus vaccine Rotarix® was introduced in Bolivia in 2008. We describe the molecular epidemiology of circulating rotavirus strains before vaccine introduction. Methods Two thousand one hundred thirty-five diarrheal samples were collected from hospitals in four Bolivian cities during 2007–2008. Forty-three percent (445 of 1030 rotavirus-positive samples) were analyzed for G and P genotypes. Among those, 331 were electropherotyped by polyacrylamide gel electrophoresis. Disease severity was quantified using a modified Vesikari scale. Results Among the 445 samples, five genotypes were found to be prevalent: G9P[8] (33%), G1P[6] (17%), G2P[4] (13%), G9P[6] (12%), and G1P[8] (4%). Co-infections with two or more strains accounted for 14% of samples. The most prevalent strain, G9, showed greater electropherotype diversity compared to other serogroups. Strain G1P[6] generally infected younger children and peaked later in the year than other strains. No particular genotype was associated with a higher severity score, though there was a significant difference in the duration of diarrhea between genotypes. Conclusions During the 2-year pre-vaccine period, substantial diversity of rotavirus co-circulating strains was observed. These data constitute a baseline against which changes in circulating strains post-vaccine introduction can be monitored. PMID:23688547

  11. Distribution of human papillomavirus (HPV genotypes and bacterial vaginosis presence in cervical samples from Paraguayan indigenous

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    Pamela Mongelos

    2015-10-01

    Conclusions: A large variety of HPV genotypes was detected and showed a slightly different pattern from previous studies on urban women in Paraguay, with the predominance of HR-HPV. Furthermore, the information of co-infections involved in BV could be useful for the improvement of national prevention programs, as well as for laboratory surveillance of these genital infections.

  12. Correlation between genotypes of tRNA-linked short tandem repeats in Entamoeba nuttalli isolates and the geographical distribution of host rhesus macaques.

    Science.gov (United States)

    Feng, Meng; Komiyama, Tomoyoshi; Yanagi, Tetsuo; Cheng, Xunjia; Sherchand, Jeevan B; Tachibana, Hiroshi

    2014-01-01

    Several polymorphic markers, including serine-rich protein genes, have been used for the genotyping of isolates from the morphologically indistinguishable protozoan parasites Entamoeba histolytica, Entamoeba dispar, and Entamoeba nuttalli. Genotypes of tRNA-linked short tandem repeats (STRs) are highly polymorphic, but the correlation with geographical distribution is unknown. We have recently isolated 15 E. nuttalli strains from wild rhesus macaques in four locations in Kathmandu Valley, Nepal. The sequences of the serine-rich protein genes of the E. nuttalli strains differed among the four locations. In this study, we analyzed tRNA-linked STRs in six loci of the 15 strains. Two genotypes were found in loci N-K2, R-R, and S(TGA)-D, three in locus S-Q, and five in locus D-A. In locus A-L, one major genotype and ten minor genotypes were found, resulting in mixtures of two to six genotypes in eight strains. By combination of the main genotypes in the six loci, the 15 strains were divided into nine genotypes. The genotypes observed in E. nuttalli strains were quite different from those in E. histolytica and E. dispar. A phylogenetic tree constructed from tRNA-linked STRs in the six loci reflected the different places of isolation. These results suggest that sequence diversity of tRNA-linked STRs in E. nuttalli occurs with relatively high frequency and might be a marker of geographical distribution of host rhesus macaques, even in limited areas.

  13. Potential geographic distribution and conservation of Audubon's Shearwater, Puffinus lherminieri in Brazil

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    Ana Cecília P.A. Lopes

    2014-01-01

    Full Text Available Audubon's Shearwater (Puffinus lherminieri Lesson 1839 is a tropical seabird occurring mainly between southern Canada and the southeast coast of Brazil. Puffinus lherminieri is considered Critically Endangered on the Brazilian Red List because it only occurs in two known localities, both of which contain very small populations. However, many offshore islands along the Brazilian coast are poorly known and the discovery of new colonies would be of considerable significance for the conservation of this species. The aim of this study was to estimate the potential geographic distribution of Audubon's Shearwater in Brazil, based on ecological niche model (ENM using Maxent algorithm with layers obtained from AquaMaps environmental dataset. The ENM was based on 37 records for reproduction areas in North and South America. The model yielded a very broad potential distribution, covering most of the Atlantic coast ranging from Brazil to the US. When filtered for islands along the Brazilian coast, the model indicates higher levels of environmental suitability near the states of São Paulo, Rio de Janeiro, Espírito Santo and Bahia. However, P. lherminieri prefers islands in environments with warm saline water. Thus, based on the influence of currents that act on the Brazilian coast we can infer undiscovered colonies are most likely to occur on islands on coast of Bahia, Espírito Santo and extreme north of the Rio de Janeiro. These should be intensively surveyed while the islands south of Cabo Frio should be discarded. The existence of new populations would have profound effects on the conservation status of this enigmatic and rarely seen seabird.

  14. Hepatitis B virus infection in blood donors in Argentina: prevalence of infection, genotype distribution and frequency of occult HBV infection.

    Science.gov (United States)

    Pisano, María Belén; Blanco, Sebastián; Carrizo, Horacio; Ré, Viviana Elizabeth; Gallego, Sandra

    2016-10-01

    This study describes the prevalence of HBV infection based on detection of HBsAg and HBV-DNA by NAT in 70,102 blood donors in Argentina (Córdoba province) and shows the viral genotype distribution and frequency of occult HBV infection (OBI) in this population. Forty-two donors were confirmed positive for HBV infection (0.06 %), and four had OBI. Genotype F was the most prevalent (71.4 %), followed by A (14.3 %), C (7.1 %) and D (7.1 %). This is the first report of the prevalence of confirmed HBV infection and the high frequency of occult HBV infection in a blood bank in Argentina.

  15. SPATIAL DISTRIBUTION OF PHLEBOTOMINAE IN PUERTO IGUAZU-MISIONES, ARGENTINA-BRAZIL-PARAGUAY BORDER AREA

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    Maria Soledad Santini

    2013-07-01

    Full Text Available SUMMARY The first Argentinian autochthonous human case of visceral leishmaniasis (VL was confirmed in Posadas (Misiones in 2006. Since then, the disease has increased its incidence and geographical distribution. In the 2006-2012 period, 107 human cases were detected (11 deaths. The presence of Lutzomyia longipalpis was detected in peridomiciles in Puerto Iguazú urban area in 2010; some of these findings were associated with households where cases of canine VL had already been reported. The objective of this study was to ascertain the abundance and spatial distribution of Lu. longipalpis in Puerto Iguazú City, on the Argentina-Brazil-Paraguay border. Lu. longipalpis proved to be exclusively urban and was found in 31% of the households sampled (n = 53, 67% of which belonged to areas of low abundance, 20% to areas of moderate abundance and 13% to areas of high abundance. Nyssomyia whitmani was the only species found both in urban and peri-urban environments, and Migonemyia migonei was registered only on the outskirts of the city. Due to the fact that Puerto Iguazú is considered to be at moderate risk at the moment, it is necessary to intensify human and canine case controls, as well as take integrated prevention and control measures regarding the environment, vectors and reservoirs on the Argentina-Brazil-Paraguay border area.

  16. IS6110 restriction fragment length polymorphism of Mycobacterium tuberculosis isolated from patients with pulmonary tuberculosis in Campinas, Brazil: evidence of intercontinental distribution of strains

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    Ana Lucia Roscani Calusni

    2003-07-01

    Full Text Available Tuberculosis (TB is a major concern in developing countries. In Brazil, few genotyping studies have been conducted to verify the number of IS6110 copies present in local prevalent strains of Mycobacterium tuberculosis, the distribution and clustering of strains. IS6110 DNA fingerprinting was performed on a sample of M. tuberculosis isolates from patients with AFB smear-positive pulmonary TB, at a hospital in Brazil. The IS6110 profiles were analyzed and compared to a M. tuberculosis database of the Houston Tuberculosis Initiative, Houston, US. Seventy-six fingerprints were obtained from 98 patients. All M. tuberculosis strains had an IS6110 copy number between 5-21 allowing for differentiation of the isolates. Human immunodeficiency virus infection was confirmed in nearly half the patients of whom data was available. Fifty-eight strains had unique patterns, while 17 strains were grouped in 7 clusters (2 to 6 strains. When compared to the HTI database, 6 strains matched isolates from El Paso, Ciudad de Juarez, Houston, and New York. Recently acquired infections were documented in 19% of cases. The community transmission of infection is intense, since some clustered strains were recovered during the four-year study period. The intercontinental dissemination of M. tuberculosis strains is suspected by demonstration of identical fingerprints in a distant country.

  17. Spatial distribution of epibenthic molluscs on a sandstone reef in the Northeast of Brazil

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    AS. Martinez

    Full Text Available The present study investigated the distribution and abundance of epibenthic molluscs and their feeding habits associated to substrate features (coverage and rugosity in a sandstone reef system in the Northeast of Brazil. Rugosity, low coral cover and high coverage of zoanthids and fleshy alga were the variables that influenced a low richness and high abundance of a few molluscan species in the reef habitat. The most abundant species were generalist carnivores, probably associated to a lesser offer and variability of resources in this type of reef system, when compared to the coral reefs. The results found in this study could reflect a normal characteristic of the molluscan community distribution in sandstone reefs, with low coral cover, or could indicate a degradation state of this habitat if it is compared to coral reefs, once that the significantly high coverage of fleshy alga has been recognized as a negative indicator of reef ecosystems health.

  18. Phlebotomine sand flies (Diptera, Psychodidae from Rio de Janeiro State, Brazil: species distribution and potential vectors of leishmaniases

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    Bruno Moreira Carvalho

    2014-03-01

    Full Text Available Phlebotomine sand flies (Diptera, Psychodidae from Rio de Janeiro State, Brazil: Species distribution and potential vectors of leishmaniases. Rio de Janeiro State, in Brazil, has endemic areas of both cutaneous and visceral leishmaniases. In these areas, entomologic surveillance actions are highly recommended by Brazil's Ministry of Health. The present work describes the results of sand fly captures performed by the Health Department of Rio de Janeiro State between 2009 and 2011 in several municipalities. An updated species list and distribution of phlebotomine sand flies in the state are provided based on an extensive literature review. Currently, the sand fly fauna of Rio de Janeiro State has 65 species, belonging to the genera Brumptomyia (8 spp. and Lutzomyia (57 spp.. Distribution maps of potential leishmaniases vector species Lutzomyia (Nyssomyia intermedia, L. migonei, L. (N. whitmani, L. (N. flaviscutellata and L. (Lutzomyia longipalpis are provided and their epidemiological importance is discussed.

  19. Antimicrobial susceptibility of Streptococcus pneumoniae and genotypic characterization of erythromycin-resistant strains in Porto Alegre, Brazil

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    F. T. Weber

    2010-03-01

    Full Text Available The antimicrobial susceptibility of 64 strains of S. pneumoniae obtained from three hospitals in Porto Alegre, Brazil, isolated between 2004 and 2005, was determined, using the agar-dilution method. The prevalence of resistant (intermediate and full resistance strains to trimethoprim/sulphamethoxazole, penicillin, tetracycline, erythromycin, chloramphenicol, and ceftriaxone were 68%, 28%, 18%, 15%, 3%, and 1%, respectively. All strains were susceptible to vancomycin. Among 18 penicillin-resistant strains, 7 were resistant to at least two other antimicrobial drugs. All erythromycin-resistant strains, except one, contained the erm(B and/or mef(A/E genes, with a predominance of the former. The resistance rate to penicillin and erythromycin in Porto Alegre remained stable. The combination of trimethoprim/ sulphamethoxazole should not be recommended to treat pneumococcal infections, because of the high rate of resistant strains.

  20. Hepatitis A Virus Genotype Distribution during a Decade of Universal Vaccination of Preadolescents

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    Lucía D’Andrea

    2015-03-01

    Full Text Available A universal vaccination program among preadolescents was implemented in Catalonia, Spain, during the period of 1999–2013 and its effectiveness has been clearly demonstrated by an overall significant attack rate reduction. However, reductions were not constant over time, and increases were again observed in 2002–2009 due to the occurrence of huge outbreaks. In the following years, in the absence of large outbreaks, the attack rate decreased again to very low levels. However, an increase of symptomatic cases in the <5 age group has recently been observed. This is an unexpected observation since children younger than 6 are mostly asymptomatic. Such a long vaccination campaign offers the opportunity to analyze not only the effectiveness of vaccination, but also the influence of the circulating genotypes on the incidence of hepatitis A among the different age groups. This study has revealed the emergence of genotype IC during a foodborne outbreak, the short-lived circulation of vaccine-escape variants isolated during an outbreak among the men-having-sex-with-men group, and the association of genotype IIIA with the increase of symptomatic cases among the very young. From a public health perspective, two conclusions may be drawn: vaccination is better at an early age, and the vaccination schedule must be complete and include all recommended vaccine doses.

  1. Genotype distribution of cervical human papillomavirus DNA in women with cervical lesions in Bioko, Equatorial Guinea

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    Carro-Campos Patricia

    2009-09-01

    Full Text Available Abstract Background The HVP vaccine is a useful tool for preventing cervical cancer. The purpose of this study is to determine the most frequent HPV genotypes in Equatorial Guinea in order to develop future vaccination strategies to apply in this country. Methods A campaign against cervical cancer was carried out in the area on a total of 1,680 women. 26 of the women, following cytological screening, were treated surgically with a loop electrosurgical excision procedure (LEEP. Cases were studied histologically and were genotyped from paraffin blocks by applying a commercial kit that recognized 35 HPV types. Results Cytological diagnoses included 17 HSIL, 1 LSIL, 5 ASC-H and 3 AGUS. Histological diagnosis resulted in 3 cases of microinvasive squamous cell carcinoma stage IA of FIGO, 9 CIN-3, 8 CIN-2, 2 CIN-1, 3 flat condylomas and mild dysplasia of the endocervical epithelium. Fifteen of twenty-five cases genotyped were positive for HPV (60%. HPV 16 and 33 were identified in four cases each, HPV 58 in two other cases, and HPV 18, 31, 52, and 82 in one case, with one HPV 16 and 58 coinfection. Conclusion The frequency of HPV types in the African area varies in comparison to other regions, particularly in Europe and USA. Vaccination against the five most common HPV types (16, 33, 58, 18, and 31 should be considered in the geographic region of West Africa and specifically in Equatorial Guinea.

  2. Ethnogeographical structure of hepatitis B virus genotype distribution in Indonesia and discovery of a new subgenotype, B9.

    Science.gov (United States)

    Thedja, Meta Dewi; Muljono, David Handojo; Nurainy, Neni; Sukowati, Caecilia H C; Verhoef, Jan; Marzuki, Sangkot

    2011-05-01

    The distribution of hepatitis B virus (HBV) in the populations of island Southeast Asia is of medical and anthropological interest and is associated with an unusually high genetic diversity. This study examined the association of this HBV genetic diversity with the ethnogeography of the populations of the Indonesian archipelago. Whole genome analysis of 21 HBV isolates from East Nusa Tenggara and Papua revealed two recently reported HBV/B subgenotypes unique to the former, B7 (7 isolates) and B8 (5 isolates), and uncovered a further novel subgenotype designated B9 (4 isolates). Further isolates were collected from 419 individuals with defined ethnic backgrounds representing 40 populations. HBV/B was predominant in Austronesian-language-speaking populations, whereas HBV/C was the major genotype in Papua and Papua-influenced populations of Moluccas; HBV/B3 was the predominant subgenotype in the western half of the archipelago (speakers of the Western Malayo-Polynesian [WMP] branch of Austronesian languages), whereas B7, B8 and B9 were specific to Nusa Tenggara (Central Malayo-Polynesian (CMP)). The result provides the first direct evidence that the distribution of HBV genotypes/subgenotypes in the Indonesian archipelago is related to the ethnic origin of its populations and suggests that the HBV distribution is associated with the ancient migratory events in the peopling of the archipelago.

  3. Global epidemiology of hepatitis C virus infection: An up-date of the distribution and circulation of hepatitis C virus genotypes

    Science.gov (United States)

    Petruzziello, Arnolfo; Marigliano, Samantha; Loquercio, Giovanna; Cozzolino, Anna; Cacciapuoti, Carmela

    2016-01-01

    AIM To review Hepatitis C virus (HCV) prevalence and genotypes distribution worldwide. METHODS We conducted a systematic study which represents one of the most comprehensive effort to quantify global HCV epidemiology, using the best available published data between 2000 and 2015 from 138 countries (about 90% of the global population), grouped in 20 geographical areas (with the exclusion of Oceania), as defined by the Global Burden of Diseases project (GBD). Countries for which we were unable to obtain HCV genotype prevalence data were excluded from calculations of regional proportions, although their populations were included in the total population size of each region when generating regional genotype prevalence estimates. RESULTS Total global HCV prevalence is estimated at 2.5% (177.5 million of HCV infected adults), ranging from 2.9% in Africa and 1.3% in Americas, with a global viraemic rate of 67% (118.9 million of HCV RNA positive cases), varying from 64.4% in Asia to 74.8% in Australasia. HCV genotype 1 is the most prevalent worldwide (49.1%), followed by genotype 3 (17.9%), 4 (16.8%) and 2 (11.0%). Genotypes 5 and 6 are responsible for the remaining < 5%. While genotypes 1 and 3 are common worldwide, the largest proportion of genotypes 4 and 5 is in lower-income countries. Although HCV genotypes 1 and 3 infections are the most prevalent globally (67.0% if considered together), other genotypes are found more commonly in lower-income countries where still account for a significant proportion of HCV cases. CONCLUSION A more precise knowledge of HCV genotype distribution will be helpful to best inform national healthcare models to improve access to new treatments. PMID:27678366

  4. Detection of porcine circovirus genotypes 2a and 2b in aborted foetuses from infected swine herds in the State of São Paulo, Brazil

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    de Castro Alessandra MMG

    2012-05-01

    Full Text Available Abstract Background Porcine circovirus type 2 (PCV2 has been associated with several disease complexes, including reproductive failure. The aim of this study was to identify the subtypes of PCV2 that are associated with reproductive failure in pigs from the State of São Paulo, Brazil and to investigate co-infections with other infectious organisms. Findings Samples of 168 aborted foetuses or mummified foetuses from five farrow-to-finish swine farms known to be infected with PCV2 and located in the State of São Paulo were tested for PCV2 by polymerase chain reaction (PCR. Positive samples were additionally tested for porcine parvovirus (PPV, Leptospira spp. and Brucella spp. by PCR. PCV2 was detected in 18 of the samples (10.7%. PPV, Brucella spp. and Leptospira spp were found in 2, 10 and 0 cases, respectively. Eleven PCV2 strains were sequenced and determined to be either genotype 2a (n = 1 or 2b (n = 10. Conclusions The findings indicate that the frequency of PCV2 infections in aborted porcine foetuses from the State of São Paulo is rather low (10.7% and that co-infection with other pathogens is common and may be involved in PCV2 associated reproductive failure. No repeatable, characteristic amino acid motifs for regions of the PCV2 capsid protein seemed to be associated with abortion in sows.

  5. Adaptabilidade e estabilidade de genótipos de girassol no Brasil Central Adaptability and stability of sunflower genotypes in Central Brazil

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    Anna Karolina Grunvald

    2008-11-01

    Full Text Available O objetivo deste trabalho foi avaliar a adaptabilidade e estabilidade de genótipos de girassol, no Brasil Central, quanto ao rendimento de grãos e de óleo. Os dados foram obtidos de ensaios de genótipos de girassol coordenados pela Embrapa Soja, de 2004 a 2007. Foram usados os métodos de Eberhart & Russell, Porto et al., Rocha et al. e Annicchiarico. Foi realizada a decomposição do índice de recomendação de Annicchiarico nos ambientes favoráveis e desfavoráveis. Este método e o de Porto et al. foram similares e mais adequados para avaliar a adaptabilidade dos genótipos. Em relação ao rendimento de grãos, as variedades BRSGira 02 e Nutrissol apresentaram adaptação ampla. Os híbridos Agrobel 959, MG50 e V03005 e as variedades Catissol e Multissol apresentaram adaptação aos ambientes favoráveis, e os híbridos BRHS 02 e BRHS 04 apresentaram adaptação aos ambientes desfavoráveis. Quanto ao rendimento de óleo, os híbridos Agrobel 959, V03005, MG50, VDH 487, EXP 1441, EXP 1447 e EXP 1446 e as variedades BRSGira 01, BRSGira 02 e Nutrissol apresentaram adaptação ampla. O híbrido MG52 e as variedades Catissol e Multissol mostraram adaptação aos ambientes favoráveis, e BRHS 04 e BRHS 02 mostraram adaptação aos ambientes desfavoráveis. Os genótipos selecionados mostraram-se estáveis, mas em níveis diferenciados.The objective of this study was to evaluate the adaptability and stability of sunflower genotype grain and oil yield, in Central Brazil. The analyzed data were obtained from sunflower genotype trials coordinated by Embrapa Soja, from 2004 to 2007. Genotype adaptability and stability were evaluated using the methods of Eberhart & Russell, Porto et al., Rocha et al., and Annicchiarico. The Annicchiarico method divides sites into favorable and unfavorable environments. This method and the one of Porto et al. were similar and more adequate to evaluate genotypic adaptability. For grain yield, the varieties BRSGira

  6. Wilson's disease in Southern Brazil: genotype-phenotype correlation and description of two novel mutations in ATP7B gene

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    Ricardo Schmitt de Bem

    2013-08-01

    Full Text Available OBJECTIVE: Wilson's disease (WD is an inborn error of metabolism caused by abnormalities of the copper-transporting protein encoding gene ATP7B. In this study, we examined ATP7B for mutations in a group of patients living in southern Brazil. METHODS: 36 WD subjects were studied and classified according to their clinical and epidemiological data. In 23 subjects the ATP7B gene was analyzed. RESULTS: Fourteen distinct mutations were detected in at least one of the alleles. The c.3207C>A substitution at exon 14 was the most common mutation (allelic frequency=37.1% followed by the c.3402delC at exon 15 (allelic frequency=11.4%. The mutations c.2018-2030del13 at exon 7 and c.4093InsT at exon 20 are being reported for the first time. CONCLUSION: The c.3207C>A substitution at exon 14, was the most common mutation, with an allelic frequency of 37.1%. This mutation is the most common mutation described in Europe.

  7. Distribution of different hepatitis C virus genotypes in patients with hepatitis C virus infection

    Institute of Scientific and Technical Information of China (English)

    Farah; Bokharaei; Salim; Hossein; Keyvani; Afsaneh; Amiri; Fatemeh; Jahanbakhsh; Sef; idi; Ramin; Shakeri; Farhad; Zamani

    2010-01-01

    AIM:To investigate the presence of mixed infection and discrepancy between hepatitis C virus(HCV) genotypes in plasma,peripheral blood mononuclear cells(PBMCs),and liver biopsy specimens.METHODS:From September 2008 up to April 2009,133 patients with chronic hepatitis C referred to Firouzgar Hospital for initiation of an antiviral therapy were recruited in the study.Five milliliters of peripheral blood was collected from each patient and liver biopsy was performed in those who gave consent or had indications...

  8. [Characteristics of distribution and transportation of rice genotype with high nitrogen utilization efficiency at the late growth stage].

    Science.gov (United States)

    Ji, Lin; Li, Ting-Xuan; Zhang, Xi-Zhou; Yu, Hai-Ying; Zheng, Zi-Cheng

    2014-04-01

    Taking a high nitrogen utilization efficiency rice genotype (NUE(H)) as test material and a low nitrogen utilization efficiency genotype (NUE(L)) as control, a pot experiment was carried out with nitrogen treatments of 100 (low) and 200 mg x kg(-1) (normal), to analyze the differences in nitrogen accumulation distribution, translocation and transport efficiency between the two genotypes. The results showed that NUE(H) could still maintain a high yield and a high nitrogen utilization efficiency at the low rate of nitrogen fertilization, with the grain yield being 1.75 times of that of NUE(L), and the nitrogen recovery efficiency of 50.9% compared with 36.4% for NUE(L). Compared to the normal nitrogen fertilization rate, the low nitrogen fertilization rate promoted the nitrogen accumulation by 34.2%, 2.5% and 0.5% in NUE(H) at the flowering, filling and mature stages, while decreased by 23.5% and 15.6% in NUE(L) at filling and mature stages, respectively. Nitrogen accumulation distribution in organs of NUE(H) was in the order of leaf > stem > root > spike, spike > leaf > stem > root, and spike > stem > leaf > root at the flowering, filling and mature stages, respectively. With the advancement of growth period, the nitrogen accumulation in spike increased obviously. At the two nitrogen fertilization rates, nitrogen transfer was ordered as leaf > stem > root for NUE(H), and stem > leaf > root for NUE(L), and nitrogen transfer efficiencies of NUE(H) were 50.8%, 60.3%, which were as 1.67 and 1.55 times as that of NUE(L), respectively. It could be concluded that the higher nitrogen transport efficiency of NUE(H) leaves laid a good foundation for the construction of grain after heading.

  9. Phenotypic and genotypic variant of MDR-Mycobacterium tuberculosis multiple isolates in the same tuberculosis episode, Rio de Janeiro, Brazil

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    M.K.N. Andrade

    2009-05-01

    Full Text Available Assuming that the IS6110-restriction fragment length polymorphism (RFLP changes at a constant rate of 3.2 years, this methodology was applied to demonstrate, for the first time, variant patterns of Mycobacterium tuberculosis (MTB in multiple isolates obtained at short time intervals from sputum and blood of an HIV+ patient with multiple admissions to the Emergency Room and to the multidrug-resistant tuberculosis (MDR-TB Reference Center of a secondary-care hospital in Rio de Janeiro, Brazil. In sputum, the IS6110-RFLP appeared in isolates with two variant patterns with 10 and 13 IS6110 copies. However, blood presented only the pattern corresponding to 10 copies, suggesting compartmentalization. With regard to the exact match of 10 of 13 bands, this may be a subpopulation with the same clonal origin and this may be related to the IS6110 transposition. A susceptibility test demonstrated an MDR profile (INH R, RIF R, SM R, and EMB R, with the sputum isolate also exhibiting EMB S (R = resistant; S = sensitive. A gene mutation confirmed resistance only to streptomycin. There was agreement between the results of the phenotypic test and the clinical response to MDR-TB treatment, suggesting serious implications with regard to treatment administration based exclusively on molecular methods, and calling attention to the fact that more effective control strategies against the emergence of MDR strains must be implemented by the TB control program to prevent transmission of MDR-MTB strains at health facilities in areas highly endemic for TB.

  10. Evidence for the Gompertz curve in the income distribution of Brazil 1978-2005

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    Moura, N. J., Jr.; Ribeiro, M. B.

    2009-01-01

    This work presents an empirical study of the evolution of the personal income distribution in Brazil. Yearly samples available from 1978 to 2005 were studied and evidence was found that the complementary cumulative distribution of personal income for 99% of the economically less favorable population is well represented by a Gompertz curve of the form G(x) = exp [exp (A-Bx)], where x is the normalized individual income. The complementary cumulative distribution of the remaining 1% richest part of the population is well represented by a Pareto power law distribution P(x) = βx-α. This result means that similarly to other countries, Brazil’s income distribution is characterized by a well defined two class system. The parameters A, B, α, β were determined by a mixture of boundary conditions, normalization and fitting methods for every year in the time span of this study. Since the Gompertz curve is characteristic of growth models, its presence here suggests that these patterns in income distribution could be a consequence of the growth dynamics of the underlying economic system. In addition, we found out that the percentage share of both the Gompertzian and Paretian components relative to the total income shows an approximate cycling pattern with periods of about 4 years and whose maximum and minimum peaks in each component alternate at about every 2 years. This finding suggests that the growth dynamics of Brazil’s economic system might possibly follow a Goodwin-type class model dynamics based on the application of the Lotka-Volterra equation to economic growth and cycle.

  11. Epstein-Barr virus and human papillomavirus infections and genotype distribution in head and neck cancers.

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    Zeyi Deng

    Full Text Available To investigate the prevalence, genotypes, and prognostic values of Epstein-Barr virus (EBV and human papillomavirus (HPV infections in Japanese patients with different types of head and neck cancer (HNC.HPV and EBV DNA, EBV genotypes and LMP-1 variants, and HPV mRNA expression were detected by PCR from fresh-frozen HNC samples. HPV genotypes were determined by direct sequencing, and EBV encoded RNA (EBER was examined by in situ hybridization.Of the 209 HNC patients, 63 (30.1% had HPV infection, and HPV-16 was the most common subtype (86.9%. HPV E6/E7 mRNA expression was found in 23 of 60 (38.3% HPV DNA-positive cases detected. The site of highest prevalence of HPV was the oropharynx (45.9%. Among 146 (69.9% HNCs in which EBV DNA was identified, 107 (73.3% and 27 (18.5% contained types A and B, respectively, and 124 (84.9% showed the existence of del-LMP-1. However, only 13 (6.2% HNCs were positive for EBER, 12 (92.3% of which derived from the nasopharynx. Co-infection of HPV and EBER was found in only 1.0% of HNCs and 10.0% of NPCs. Kaplan-Meier survival analysis showed significantly better disease-specific and overall survival in the HPV DNA+/mRNA+ oropharyngeal squamous cell carcinoma (OPC patients than in the other OPC patients (P = 0.027 and 0.017, respectively. Multivariate analysis showed that stage T1-3 (P = 0.002 and HPV mRNA-positive status (P = 0.061 independently predicted better disease-specific survival. No significant difference in disease-specific survival was found between the EBER-positive and -negative NPC patients (P = 0.155.Our findings indicate that co-infection with HPV and EBV is rare in HNC. Oropharyngeal SCC with active HPV infection was related to a highly favorable outcome, while EBV status was not prognostic in the NPC cohort.

  12. Modeling distribution of Phoneutria bahiensis (Araneae: Ctenidae: an endemic and threatened spider from Brazil

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    Marcelo A Dias

    2011-08-01

    Full Text Available Phoneutria bahiensis Simó & Brescovit, 2001 is a large ctenid spider inhabiting the states of Bahia and Espírito Santo, Brazil. Considering that it is probably endemic, this species was included in the Brazilian red book of threatened species. Here, we predict the distribution range of P. bahiensis using 19 bioclimatic variables in the model design. The most septentrional record for this spider was indicated for northern Bahia. The model predicts that the distribution range covers the Atlantic Forest from the state of Paraíba to Rio de Janeiro, with the best suitable area in the Atlantic Forest of the state of Bahia. The bioclimatic variable with the best contribution to the model was precipitation in the driest quarter. Based on collected data, the species inhabits Ombrophilous Forests and Restinga vegetation, two ecosystems of the Atlantic Forest biome. In the best-predicted area of distribution, eleven Conservation Units were included. This information could be considered for future conservation plans of this species.

  13. H. pylori clinical isolates have diverse babAB genotype distributions over different topographic sites of stomach with correlation to clinical disease outcomes

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    Sheu Shew-Meei

    2012-05-01

    Full Text Available Abstract Background Intragenomic recombination between babA and babB mediates antigenic variations and may help H. pylori colonization. This study determined whether variable genotypes of babA and babB correlate to different clinical disease outcomes, and can distribute over the different gastric niches. Results This study enrolled 92 clinical strains (45 from peptic ulcer, 27 from gastritis, and 20 from gastric cancer to detect whether the babA and babB are at locus A or B by PCR reactions using the primers designed from the upstream and variable region of the babA and babB genes. Four genotypes of babA and babB (A B, AB B, A AB, AB AB were found. The distribution of the 4 genotypes in 92 clinical strains was significantly different among patients with different gastric diseases (p vs. 9.7%, p p p > 0.05. Besides, the study enrolled 19 patients to verify whether variable genotypes of babAB existed in the different gastric niches. Among the patients infected with more than one babAB genotypes over antrum and corpus, there were higher rate of genotypes as A B or AB AB in isolates from antrum than in those from corpus (75.0 % vs. 16.7%, p  Conclusions The H. pylori isolate with the AB AB genotype correlates with an increased gastric cancer risk, and colonize in an antrum predominant manner.

  14. HPV prevalence and genotype distribution in a population-based split-sample study of well-screened women using CLART HPV2 Human Papillomavirus genotype microarray system

    DEFF Research Database (Denmark)

    Bonde, Jesper; Rebolj, Matejka; Ejegod, Ditte Møller;

    2014-01-01

    , Denmark, an area with a high background risk of cervical cancer where women aged 23-65 years are targeted for organized screening. METHODS: Material from 5,068 SurePath samples of women participating in routine screening and clinical follow-up of cervical abnormalities was tested using liquid based...... cytology, CLART HPV2 and Hybrid Capture 2 (HC2). RESULTS: At least one of the 35 defined genotypes was detected by CLART in 1,896 (37%) samples. The most frequent high-risk genotypes were HPV 16 (7%), HPV 52 (5%), and HPV 31 (4%). The most frequent low-risk genotypes were HPV 53 (5%), HPV 61 (4%), and HPV...... CLART showed a higher analytical sensitivity for 13 high-risk HPV genotypes than HC2, and this was found in all age-groups and in women normal cytology. CONCLUSIONS: CLART performed well with a positive reproducibility for high-risk genotypes of 86%, and a negative reproducibility of 97%. This report...

  15. Variations in Concentration and Distribution of Health-Related Elements Affected by Environmental and Genotypic Differences in Rice Grains

    Institute of Scientific and Technical Information of China (English)

    REN Xue-liang; LIU Qing-long; WU Dian-xing; SHU Qing-yao

    2006-01-01

    A research work was conducted to investigate the variations in concentration and distribution of health-related elements affected by environmental and genotypic differences in rice grains. The grain of Xieqingzao B (indica rice variety) and Xiushui 110 (japonica rice variety) were divided into: hull, bran and milled rice, based on the conventional rice consumption and process. Xieqingzao B was grown at four different locations, and at one location, it was planted in the same field and season as Xiushui 110. In addition, another four indica and four japonica varieties were cultivated in the same field and time to analyze the elements in milled rice. The average concentrations of total P and phytic acid P were the highest in the bran, followed by milled rice and hull; Zn, K, Mg, and As concentrations were the highest in bran, followed by hull and milled rice, while Fe, Ca, and Cu concentrations were the highest in the hull, but similar in bran and milled rice. The result indicated that genotype and environment significantly affected the concentrations of all the tested elements, while the distribution of the above elements in grains was not in the same order as concentration. Moreover, all the elements except 97.7% of Cu and 93.2% of Fe was deposited in the hull on average, were mostly distributed either in the bran (37.3% and 57.7% for K and phytic acid P) or in milled rice (41.7%, 42.6%, 40.3%, 49.8% for Zn, Mg, As, total P, respectively).

  16. Spatial distribution and socioeconomic context of tuberculosis in Rio de Janeiro, Brazil

    Science.gov (United States)

    Pereira, Alessandra Gonçalves Lisbôa; Medronho, Roberto de Andrade; Escosteguy, Claudia Caminha; Valencia, Luis Iván Ortiz; Magalhães, Mônica de Avelar Figueiredo Mafra

    2015-01-01

    OBJECTIVE To analyze the spatial distribution of risk for tuberculosis and its socioeconomic determinants in the city of Rio de Janeiro, Brazil. METHODS An ecological study on the association between the mean incidence rate of tuberculosis from 2004 to 2006 and socioeconomic indicators of the Censo Demográfico (Demographic Census) of 2000. The unit of analysis was the home district registered in the Sistema de Informação de Agravos de Notificação (Notifiable Diseases Information System) of Rio de Janeiro, Southeastern Brazil. The rates were standardized by sex and age group, and smoothed by the empirical Bayes method. Spatial autocorrelation was evaluated by Moran’s I. Multiple linear regression models were studied and the appropriateness of incorporating the spatial component in modeling was evaluated. RESULTS We observed a higher risk of the disease in some neighborhoods of the port and north regions, as well as a high incidence in the slums of Rocinha and Vidigal, in the south region, and Cidade de Deus, in the west. The final model identified a positive association for the variables: percentage of permanent private households in which the head of the house earns three to five minimum wages; percentage of individual residents in the neighborhood; and percentage of people living in homes with more than two people per bedroom. CONCLUSIONS The spatial analysis identified areas of risk of tuberculosis incidence in the neighborhoods of the city of Rio de Janeiro and also found spatial dependence for the incidence of tuberculosis and some socioeconomic variables. However, the inclusion of the space component in the final model was not required during the modeling process. PMID:26270014

  17. Spatial distribution and socioeconomic context of tuberculosis in Rio de Janeiro, Brazil

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    Alessandra Gonçalves Lisbôa Pereira

    2015-01-01

    Full Text Available OBJECTIVE To analyze the spatial distribution of risk for tuberculosis and its socioeconomic determinants in the city of Rio de Janeiro, Brazil.METHODS An ecological study on the association between the mean incidence rate of tuberculosis from 2004 to 2006 and socioeconomic indicators of the Censo Demográfico (Demographic Census of 2000. The unit of analysis was the home district registered in the Sistema de Informação de Agravos de Notificação (Notifiable Diseases Information System of Rio de Janeiro, Southeastern Brazil. The rates were standardized by sex and age group, and smoothed by the empirical Bayes method. Spatial autocorrelation was evaluated by Moran’s I. Multiple linear regression models were studied and the appropriateness of incorporating the spatial component in modeling was evaluated.RESULTS We observed a higher risk of the disease in some neighborhoods of the port and north regions, as well as a high incidence in the slums of Rocinha and Vidigal, in the south region, and Cidade de Deus, in the west. The final model identified a positive association for the variables: percentage of permanent private households in which the head of the house earns three to five minimum wages; percentage of individual residents in the neighborhood; and percentage of people living in homes with more than two people per bedroom.CONCLUSIONS The spatial analysis identified areas of risk of tuberculosis incidence in the neighborhoods of the city of Rio de Janeiro and also found spatial dependence for the incidence of tuberculosis and some socioeconomic variables. However, the inclusion of the space component in the final model was not required during the modeling process.

  18. EVALUATION OF CIRCUMSPOROZOITE PROTEIN OF Plasmodium vivax TO ESTIMATE ITS PREVALENCE IN OIAPOQUE , AMAPÁ STATE, BRAZIL, BORDERING FRENCH GUIANA

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    Margarete do Socorro Mendonça GOMES

    Full Text Available SUMMARY Malaria is a major health problem for people who live on the border between Brazil and French Guiana. Here we discuss Plasmodium vivax distribution pattern in the town of Oiapoque, Amapá State using the circumsporozoite (CS gene as a marker. Ninety-one peripheral blood samples from P. vivax patients have been studied. Of these, 64 individuals were from the municipality of Oiapoque (Amapá State, Brazil and 27 patients from French Guiana (August to December 2011. DNA extraction was performed, and a fragment of the P. vivax CS gene was subsequently analyzed using PCR/RFLP. The VK210 genotype was the most common in both countries (48.36% in Brazil and 14.28% in French Guiana, followed by the P. vivax-like (1.10% in both Brazil and French Guiana and VK247 (1.10% only in Brazil in single infections. We were able to detect all three CS genotypes simultaneously in mixed infections. There were no statistically significant differences either regarding infection site or parasitaemia among individuals with different genotypes. These results suggest that the same genotypes circulating in French Guiana are found in the municipality of Oiapoque in Brazil. These findings suggest that there may be a dispersion of parasitic populations occurring between the two countries. Most likely, this distribution is associated with prolonged and/or more complex transmission patterns of these genotypes in Brazil, bordering French Guiana.

  19. EVALUATION OF CIRCUMSPOROZOITE PROTEIN OF Plasmodium vivax TO ESTIMATE ITS PREVALENCE IN OIAPOQUE , AMAPÁ STATE, BRAZIL, BORDERING FRENCH GUIANA.

    Science.gov (United States)

    Gomes, Margarete do Socorro Mendonça; Vieira, José Luiz Fernandes; Cassiano, Gustavo Capatti; Musset, Lise; Legrand, Eric; Nacher, Mathieu; Couto, Vanja Suely Calvosa D'Almeida; Machado, Ricardo Luiz Dantas; Couto, Álvaro Augusto Ribeiro D'Almeida

    2016-09-22

    Malaria is a major health problem for people who live on the border between Brazil and French Guiana. Here we discuss Plasmodium vivax distribution pattern in the town of Oiapoque, Amapá State using the circumsporozoite (CS) gene as a marker. Ninety-one peripheral blood samples from P. vivax patients have been studied. Of these, 64 individuals were from the municipality of Oiapoque (Amapá State, Brazil) and 27 patients from French Guiana (August to December 2011). DNA extraction was performed, and a fragment of the P. vivax CS gene was subsequently analyzed using PCR/RFLP. The VK210 genotype was the most common in both countries (48.36% in Brazil and 14.28% in French Guiana), followed by the P. vivax-like (1.10% in both Brazil and French Guiana) and VK247 (1.10% only in Brazil) in single infections. We were able to detect all three CS genotypes simultaneously in mixed infections. There were no statistically significant differences either regarding infection site or parasitaemia among individuals with different genotypes. These results suggest that the same genotypes circulating in French Guiana are found in the municipality of Oiapoque in Brazil. These findings suggest that there may be a dispersion of parasitic populations occurring between the two countries. Most likely, this distribution is associated with prolonged and/or more complex transmission patterns of these genotypes in Brazil, bordering French Guiana.

  20. EVALUATION OF CIRCUMSPOROZOITE PROTEIN OF Plasmodium vivax TO ESTIMATE ITS PREVALENCE IN OIAPOQUE , AMAPÁ STATE, BRAZIL, BORDERING FRENCH GUIANA

    Science.gov (United States)

    GOMES, Margarete do Socorro Mendonça; VIEIRA, José Luiz Fernandes; CASSIANO, Gustavo Capatti; MUSSET, Lise; LEGRAND, Eric; NACHER, Mathieu; COUTO, Vanja Suely Calvosa D'Almeida; MACHADO, Ricardo Luiz Dantas; COUTO, Álvaro Augusto Ribeiro D'Almeida

    2016-01-01

    SUMMARY Malaria is a major health problem for people who live on the border between Brazil and French Guiana. Here we discuss Plasmodium vivax distribution pattern in the town of Oiapoque, Amapá State using the circumsporozoite (CS) gene as a marker. Ninety-one peripheral blood samples from P. vivax patients have been studied. Of these, 64 individuals were from the municipality of Oiapoque (Amapá State, Brazil) and 27 patients from French Guiana (August to December 2011). DNA extraction was performed, and a fragment of the P. vivax CS gene was subsequently analyzed using PCR/RFLP. The VK210 genotype was the most common in both countries (48.36% in Brazil and 14.28% in French Guiana), followed by the P. vivax-like (1.10% in both Brazil and French Guiana) and VK247 (1.10% only in Brazil) in single infections. We were able to detect all three CS genotypes simultaneously in mixed infections. There were no statistically significant differences either regarding infection site or parasitaemia among individuals with different genotypes. These results suggest that the same genotypes circulating in French Guiana are found in the municipality of Oiapoque in Brazil. These findings suggest that there may be a dispersion of parasitic populations occurring between the two countries. Most likely, this distribution is associated with prolonged and/or more complex transmission patterns of these genotypes in Brazil, bordering French Guiana. PMID:27680177

  1. Genotypic Difference of Plants in K—Enrichment Capability and the Distribution of K in Plant Rhizosphere

    Institute of Scientific and Technical Information of China (English)

    YANWEIDONG; SHIWEIMNG; 等

    1997-01-01

    Plant genotypic difference of potassium-enrichment capalbility and potassium(K) distribution at root-soil interace of different plant genotypes were studied by using seven plant species and eight varieties of tobacco(Nicotiana tabacum L.) The results indicated that K enrichment capability was: Ethiopian guizotia(Guizotia abyssinica Cass.)>feather cockscomb(Celosia argentea L.)>alligator alternanthera(Alternathera philoxeroides (Mart.) Griseb.)>tobacco>sesbania(Sesbania cannabina(Retz.)Pers.)>wheat(Triticum aestivum L.)>broadbean(Vicia faba L.).Ethiopian guizotia showed very high K-enrichment capability at different soil K levles,and the K content in its dry matter was over 110 mg kg-1 when soil K was fully supplied ,and about 60 mg kg-1 when no K fertilizer was applied.For alligator alternanthera,the capabiltiy to accumulate K was closely related with its growth medium,When it was grown on soils ,both the K content and K uptake rate of the plant were similar to whose of tobacco.Evident K depletion was observed in the rhizospere of all plant species,and the depletion rate was related to the capability of enrichment of plant .

  2. Population genetic structure of two columnar cacti with a patchy distribution in eastern Brazil.

    Science.gov (United States)

    Moraes, Evandro M; Abreu, Aluana G; Andrade, Sónia C S; Sene, Fabio M; Solferini, Vera N

    2005-11-01

    The genetic variability and population genetic structure of six populations of Praecereus euchlorus and Pilosocereus machrisii were investigated. The genetic variability in single populations of Pilosocereus vilaboensis, Pilosocereus aureispinus, and Facheiroa squamosa was also examined. All of these cacti species have a patchy geographic distribution in which they are restricted to small areas of xeric habitats in eastern Brazil. An analysis of genetic structure was used to gain insights into the historical mechanisms responsible for the patchy distribution of P. euchlorus and P. machrisii. High genetic variability was found at the populational level in all species (P=58.9-92.8%, A(p)=2.34-3.33, H(e)=0.266-0.401), and did not support our expectations of low variability based on the small population size. Substantial inbreeding was detected within populations (F(IS)=0.370-0.623). In agreement with their insular distribution patterns, P. euchlorus and P. machrisii had a high genetic differentiation (F(ST)=0.484 and F(ST)=0.281, respectively), with no evidence of isolation by distance. Accordingly, estimates of gene flow (N(m)) calculated from F(ST) and private alleles were below the level of N(m)=1 in P. machrisii and P. euchlorus. These results favored historical fragmentation as the mechanism responsible for the patchy distribution of these two species. The genetic distance between P. machrisii and P. vilaboensis was not compatible with their taxonomic distinction, indicating a possible local speciation event in this genus, or the occurrence of introgression events.

  3. Comparison of spatial interpolation methods for the estimation of precipitation distribution in Distrito Federal, Brazil

    Science.gov (United States)

    Borges, Pablo de Amorim; Franke, Johannes; da Anunciação, Yumiko Marina Tanaka; Weiss, Holger; Bernhofer, Christian

    2016-01-01

    Available climatological information of Distrito Federal does not satisfy the requirements for detailed climate diagnosis, as they do not provide the necessary spatial resolution for water resources management purposes. Annual and seasonal climatology (1971-2000) of precipitation from 6 meteorological stations and 54 rain gauges from Central Brazil were used to test eight different spatial interpolation methods. Geographical factors (i.e., altitude, longitude and latitude) explain a large portion of precipitation in the region, and therefore, multivariate models were included. The performance of estimations was assessed through independent validation using mean square error, correlation coefficient and Nash-Sutcliffe efficiency criterion. Inverse distance weighting (IDW), ordinary kriging (OK) and the multivariate regression with interpolation of residuals by IDW (MRegIDW) and OK (MRegOK) have performed the lowest errors and the highest correlation and Nash-Sutcliffe efficiency criterion. In general, interpolation methods provide similar spatial distributions of rainfall wherever observation network is dense. However, the inclusion of geographical variables to the interpolation method should improve estimates in areas where the observation network density is low. Nevertheless, the assessment of uncertainties using a geostatistical method provides supplementary and qualitative information which should be considered when interpreting the spatial distribution of rainfall.

  4. The effects of non-agricultural activities on income distribution in rural Brazil

    Directory of Open Access Journals (Sweden)

    Henrique D. Neder

    2003-06-01

    Full Text Available The growth of non-agricultural activity since the 1980s has reconfigured the economic and social dynamic in Brazil’s rural areas. Our paper intends to describe the impact of this growth on income distribution in rural Brazil. We made use of a method of decomposition of two indicators of income distribution applied to1992 and 1999 Brazilian National Household Sample Survey (PNAD data: the variation coefficient and the Gini index. It was observed that non-agricultural activities have increased the concentration of rural income and that this phenomenon is more prominent in Region I (states of Brazil’s Northeast and the state of Tocantins and Region IV (states of São Paulo and Mato Grosso do Sul and the Distrito Federal. It was found that the income concentrating effect of each non-agricultural activity branch (commerce, transformation industry, administration, service differed by region. In Region I, income from the "Social/Public Administration and Other Activities branch " (a PNAD designation presents a coefficient of relative concentration greater than a unit, which indicates that income from this activities branch acts to increase the concentration of non-agricultural income in this region. In Region IV, income from industrial activities and from Social/ Public Administration and Other Activities both present coefficients of relative concentration greater than a unit; therefore, both branches act to increase the concentration of income from non-agricultural activities in this region.

  5. HCV infection in northeastern Brazil: unexpected high prevalence of genotype 3a and absence of African genotypes Infecção pelo vírus da hepatite C no nordeste do Brasil: alta prevalência inesperada do genotipo 3a e ausência de genotipos africanos

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    Raymundo PARANÁ

    2000-10-01

    Full Text Available The genomic diversity of HCV embraces 6 genotypes and at least 52 subtypes with clinical and epidemiological correlations. There is a paucity of studies assessing HCV genotypes and biomolecular epidemiology in Brazil. We studied genotype distribution and epidemiological aspects in 232 HCV carriers, 133 (57,9% males and 99 (42,1% females, followed in the liver disease referral unit in Salvador, BA, northeastern Brazil. All of them were anti-HCV positive by 3rd generation ELISA assay, and HCV-RNA positive by RT-PCR. Genotyping was performed by INNOLIPA. Assessment of risk factors for HCV infection showed that 93 (40% had past blood transfusion, 14 (6% intravenous drug use, 19 (8% inhalation of cocaine, 28 (12% tattooing, 15 (7% were health care workers, 5 (2% had reused disposable syringes, 5 (2% had multiple risk factors and in 53 (23% no risk factor was determined. Genotype 1a was observed in 75 (32%, 1b in 72 (31%, 3a in 61 (26%, 2ab in 14 (6%; 5 (2.5% had mixed genotypes and 5 (2.5% were undetermined. Patients with genotype 1 had a higher mean age (P A organização e diversidade genômica do vírus da hepatite C define, pelo menos, 6 genotipos e 52 subtipos com peculiaridades clínicas e epidemiológicas. Há escassez de estudos referentes ao genotipo do vírus da hepatite C no Brasil, assim como sua epidemiologia biomolecular. Foram estudados a freqüência do genotipo e os aspectos epidemiológicos em 232 portadores do vírus da hepatite C, 133 (57,9% homens e 99 (42,1% mulheres, seguidos num centro de referência para doenças de fígado em Salvador, nordeste do Brasil. Todos os pacientes eram anti-HCV positivo por ELISA de terceira geração e HCV RNA positivo por RT PCR. O genotipo foi determinado por INNOLIPA. Os fatores de risco para o vírus da hepatite C verificados através de questionário padrão, demonstrou que 93 (40% tinham história de transfusão, 14 (6% eram usuários de droga venosa, 19 (18% referiam inalação de coca

  6. HCMV gB genotypes in cervical secretion and placenta tissues in the state of Espírito Santo, Southeastearn Brazil Genótipos gB de citomegalovírus humano em secreção cervical e placenta no Espírito Santo, Sudeste do Brasil

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    Liliana Cruz Spano

    2007-09-01

    Full Text Available Human cytomegalovirus (HCMV displays genetic variability in several regions, supposed to be related with strain-specific tissue tropism and immunopathogenesis. Based on sequence variation in the UL55 gene that encodes gB glycoprotein, HCMV strains can be assigned to one of four genotypes. Previous studies have addressed gB genotyping mostly by investigating strains derived from immunosuppressed patients, sometimes without previous knowledge about genotype distribution in a geographic area. The present study verified the distribution of HCMV gB genotypes of strains obtained from immunocompetent women at Vitória City, Espírito Santo State, Southeastern, Brazil. The HCMV genome was extracted from their cervical secretion, fetal and maternal placenta tissues (chorionic villous and decidua from abortion cases and from white blood cells (WBCs. HCMV genotyping was performed by restriction fragment length polymorphism analyses of amplified product from the high variability site of the UL55 gene. All four genotypes were observed in both cervical secretion and placenta, whereas in WBCs a single gB1 genotype was detected. HCMV gB1 and gB2 genotypes were detected, respectively, in nine and in six of the 23 studied samples, while gB3 and gB4 were each found in four separate samples of the total. The differences in genotype frequency were not considered statistically significant. No mixed genotype infection was observed. The results indicated that the four gB HCMV genotypes had no particular tropism for placenta tissues and that all genotypes circulated within immunocompetent women at the time and in the region of study.O citomegalovírus humano (HCMV apresenta variabilidade em diversas regiões do genoma, supostamente relacionada ao tropismo tecidual e imunopatogênese viral. Baseando-se na variação de seqüência do gene UL55 que codifica a glicoproteína gB, o HCMV pode ser classificado em um dos quatro genótipos. Estudos prévios têm investigado a

  7. Reduction in Rotavirus Disease and Sustained Predominance of G2P[4] Rotavirus Strain following Introduction of Rotavirus Vaccine in Recife, Brazil.

    Science.gov (United States)

    Montenegro, Fernanda Maria Ulisses; Falbo, Ana Rodrigues; Germano, Eliane Mendes; Correia, Nancy Barros; Souza, Edvaldo da Silva; Nakagomi, Osamu; Nakagomi, Toyoko; Cuevas, Luis E; Cunliffe, Nigel A; Correia, Jailson B

    2015-06-01

    Rotavirus vaccination was introduced in Brazil in March 2006. We describe the distribution of rotavirus genotypes in children with acute gastroenteritis in a hospital in Recife, Brazil, during pre- and post-vaccination periods. There was a 43.8% reduction in the proportion of diarrhea episodes due to rotavirus. Nevertheless, we observed a sustained predominance of G2P[4] as the main genotype identified in the post-vaccination period.

  8. Diversity and distribution of aquatic insects in Southern Brazil wetlands: implications for biodiversity conservation in a Neotropical region.

    Science.gov (United States)

    Maltchik, Leonardo; Dalzochio, Marina Schmidt; Stenert, Cristina; Rolon, Ana Silvia

    2012-03-01

    The selection of priority areas is an enormous challenge for biodiversity conservation. Some biogeographic methods have been used to identify the priority areas to conservation, and panbiogeography is one of them. This study aimed at the utilization of panbiogeographic tools, to identify the distribution patterns of aquatic insect genera, in wetland systems of an extensive area in the Neotropical region (approximately 280 000km2), and to compare the distribution of the biogeographic units identified by the aquatic insects, with the conservation units of Southern Brazil. We analyzed the distribution pattern of 82 genera distributed in four orders of aquatic insects (Diptera, Odonata, Ephemeroptera and Trichoptera) in Southern Brazil wetlands. Therefore, 32 biogeographic nodes corresponded to the priority areas for conservation of the aquatic insect diversity. Among this total, 13 were located in the Atlantic Rainforest, 16 in the Pampa and three amongst both biomes. The distribution of nodes showed that only 15% of the dispersion centers of insects were inserted in conservation units. The four priority areas pointed by node cluster criterion must be considered in further inclusions of areas for biodiversity conservation in Southern Brazil wetlands, since such areas present species from different ancestral biota. The inclusion of such areas into the conservation units would be a strong way to conserve the aquatic biodiversity in this region.

  9. The Impact of Global Climate Change on the Geographic Distribution and Sustainable Harvest of Hancornia speciosa Gomes (Apocynaceae) in Brazil.

    Science.gov (United States)

    Nabout, João Carlos; Magalhães, Mara Rúbia; de Amorim Gomes, Marcos Aurélio; da Cunha, Hélida Ferreira

    2016-04-01

    The global Climate change may affect biodiversity and the functioning of ecosystems by changing the appropriate locations for the development and establishment of the species. The Hancornia speciosa, popularly called Mangaba, is a plant species that has potential commercial value and contributes to rural economic activities in Brazil. The aim of this study was to evaluate the impact of global climate change on the potential geographic distribution, productivity, and value of production of H. speciosa in Brazil. We used MaxEnt to estimate the potential geographic distribution of the species in current and future (2050) climate scenarios. We obtained the productivity and value of production for 74 municipalities in Brazil. Moreover, to explain the variation the productivity and value of production, we constructed 15 models based on four variables: two ecological (ecological niche model and the presence of Unity of conservation) and two socio-economic (gross domestic product and human developed index). The models were selected using Akaike Information Criteria. Our results suggest that municipalities currently harvesting H. speciosa will have lower harvest rates in the future (mainly in northeastern Brazil). The best model to explain the productivity was ecological niche model; thus, municipalities with higher productivity are inserted in regions with higher environmental suitability (indicated by niche model). Thus, in the future, the municipalities harvesting H. speciosa will produce less because there will be less suitable habitat for H. speciosa, which in turn will affect the H. speciosa harvest and the local economy.

  10. The Impact of Global Climate Change on the Geographic Distribution and Sustainable Harvest of Hancornia speciosa Gomes (Apocynaceae) in Brazil

    Science.gov (United States)

    Nabout, João Carlos; Magalhães, Mara Rúbia; de Amorim Gomes, Marcos Aurélio; da Cunha, Hélida Ferreira

    2016-04-01

    The global Climate change may affect biodiversity and the functioning of ecosystems by changing the appropriate locations for the development and establishment of the species. The Hancornia speciosa, popularly called Mangaba, is a plant species that has potential commercial value and contributes to rural economic activities in Brazil. The aim of this study was to evaluate the impact of global climate change on the potential geographic distribution, productivity, and value of production of H. speciosa in Brazil. We used MaxEnt to estimate the potential geographic distribution of the species in current and future (2050) climate scenarios. We obtained the productivity and value of production for 74 municipalities in Brazil. Moreover, to explain the variation the productivity and value of production, we constructed 15 models based on four variables: two ecological (ecological niche model and the presence of Unity of conservation) and two socio-economic (gross domestic product and human developed index). The models were selected using Akaike Information Criteria. Our results suggest that municipalities currently harvesting H. speciosa will have lower harvest rates in the future (mainly in northeastern Brazil). The best model to explain the productivity was ecological niche model; thus, municipalities with higher productivity are inserted in regions with higher environmental suitability (indicated by niche model). Thus, in the future, the municipalities harvesting H. speciosa will produce less because there will be less suitable habitat for H. speciosa, which in turn will affect the H. speciosa harvest and the local economy.

  11. Genotype Distribution and Molecular Epidemiology of Hepatitis C Virus in Hubei, Central China.

    Directory of Open Access Journals (Sweden)

    Jing Peng

    Full Text Available Little is known about the molecular epidemiology of hepatitis C virus (HCV infection in Central China.A total of 570 patients from Hubei Province in central China were enrolled. These patients were tested positive for HCV antibody prior to blood transfusion. Among them, 177 were characterized by partial NS5B and/or Core-E1 sequences and classified into five subtypes: 1b, 83.0% (147/177; 2a, 13.0% (23/177; 3b, 2.3% (4/177; 6a, 1.1% (2/177; 3a, 0.6% (1/177. Analysis of genotype-associated risk factors revealed that paid blood donation and transfusion before 1997 were strongly associated with subtypes 1b and 2a, while some subtype 2a cases were also found in individuals with high risk sexual behaviors; subtypes 3b, 6a, and 3a were detected only in intravenous drug users. Phylogeographic analyses based on the coalescent datasets demonstrated that 1b, 2a, 3b, and 6a were locally epidemic in Hubei Province. Among them, subtype 1b Hubei strains may have served as the origins of this subtype in China, and 2a and 3b Hubei strains may have descended from the northwest and southwest of China, respectively, while 6a Hubei strains may have been imported from the central south and southwest.The results suggest that the migration patterns of HCV in Hubei are complex and variable among different subtypes. Implementation of mandatory HCV screening before donation has significantly decreased the incidence of transfusion-associated HCV infection since 1997. More attention should be paid to intravenous drug use and unsafe sexual contact, which may have become new risk factors for HCV infection in Hubei Province.

  12. Diversity, natural history, and geographic distribution of snakes in the Caatinga, Northeastern Brazil.

    Science.gov (United States)

    Guedes, Thaís B; Nogueira, Cristiano; Marques, Otavio A V

    2014-09-19

    The present study is a synthesis on snake diversity and distribution in the Caatinga region of northeastern Brazil, providing an updated species list and data on natural history and geographic distribution. Our study is based on the careful revision of 7,102 voucher specimens, housed in 17 herpetological collections, complemented by data on taxonomic literature. We recorded a total of 112 snake species in the Caatinga, belonging to nine families: Anomalepididae, Leptotyphlopidae, Typhlopidae, Aniliidae, Boidae, Viperidae, Elapidae, Colubridae, and Dipsadidae. Our list includes at least 13 never recorded species for this region, as well as distribution records for all species known from the Caatinga (including expansion and new records of distribution). The snake assemblage of the Caatinga is complex, sharing species with other continental open areas (38.4%), forested areas (27.7%), and both open and forested areas (32.1%). The richest areas were isolated plateaus, followed by contact areas, semi-arid caatinga, and sandy dunes of the São Franscisco River. We identified 22 Caatinga endemic species with the sandy dunes of São Franscico River showing the highest endemism level (12 species, with six endemic species restricted to the area) followed by semi-arid caatinga, and isolated plateaus (eight endemic species each, and six and three endemic species with restricted distribution to each area, respectively). Most species show relatively restricted ranges in parts of the Caatinga. The snake assemblage in Caatinga includes mainly terrestrial species (38.4%), followed by fossorial/cryptozoic (26.8%), arboreal/semi-arboreal (26.8%), and aquatic/semi-aquatic (7.1%) species. Vertebrates are the most important dietary item (80.4%), with 56.6% of species being generalist consumers of this kind of prey; 24.4% are frog-eaters, 7.8% prey on caecilians/amphisbaenians, 6.7% lizard-eaters, 3.3% mammal-eaters, and 1.1% are fish-eaters. Only 18.7% of the snakes eat invertebrate

  13. Hepatitis B virus genotype distribution and genotype-specific BCP/preCore substitutions in acute and chronic infections in Argentina.

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    María Mora González López Ledesma

    Full Text Available In order to assess Hepatitis B Virus genotype (g and subgenotype (sg implications in the course of infection, 234 HBsAg positive patients in different infection stages were characterized (66 acute infections, 63 HBeAg positive chronic infections and 105 anti-HBe positive chronic infections.Overall, sgA2 (17.9%, gD (20.9%, sgF1b (34.2% and sgF4 (19.7% were the most prevalent. Subgenotype F1b was overrepresented in acute and chronic HBeAg infections (56.1%, whereas gD was the most frequent (40.0% in anti-HBe positive chronic infections. Among chronic infections, HBeAg positivity rates were 50.0, 12.5, 62.8 and 35.3% for sgA2, gD, sgF1b and sgF4, respectively (p <0.05. A bias toward BCP/preCore mutations was observed among genotypes. In anti-HBe positive chronic infections, sgF1b was more prone to have A1762T/G1764A mutation than sgA2, sgF4 and gD (75.0, 40.0, 33.3 and 31.8%, p<0.005, whereas in the pC region, gD and sgF4 were more likely to have G1896A than sgA2 and sgF1b (81.0, 72.7, 0.0 and 31.3%, p <0.001. The unexpected low frequency of the G1896A mutation in the sgF1b (despite carrying 1858T prompted us to perform a further analysis in order to identify genotype-specific features that could justify the pattern mutations observed. A region encompassing nucleotides 1720 to 1920 showed the higher dissimilarity between sgF1b and sgF4. Genotypes and subgenotypes carrying the 1727G, 1740C and 1773T polymorphisms were prevented to mutate position 1896.HBeAg seroconversion is a critical event in the natural history of HBV infection. Differences in the HBeAg positivity rate might be relevant since different studies have observed that delayed HBeAg seroconversion is associated with a more severe clinical course of infection, highlighting the critical role that genotypes/subgenotypes might play in the progression of HBV infection. Polymorphisms in the regions 1720 to 1920 could be involved in the molecular mechanisms underlying seroconversion of each

  14. Prevalence and Distribution of High-Risk Genotypes of HPV in Women with Severe Cervical Lesions in Madrid, Spain: Importance of Detecting Genotype 16 and Other High-Risk Genotypes.

    Science.gov (United States)

    Mateos Lindemann, Maria Luisa; Sánchez Calvo, Juan Manuel; Chacón de Antonio, Jesús; Sanz, Itziar; Diaz, Esperanza; Rubio, Maria Dolores; de la Morena, Maria Luisa

    2011-01-01

    Background. Persistent infection with high-risk human papillomavirus (HR-HPV) has been demonstrated to be the necessary causal factor for developing cervical cancer. To know the most prevalent HR-HPV in different geographical areas is important to design diagnostic tests and implementation of vaccines. Objectives. The goal of this study is to evaluate the prevalence of HR-HPV in a total of 1001 patients, 198 with normal cytology results, 498 with low-grade squamous intraepithelial lesion (LSIL), and 205 with high-grade squamous intraepithelial lesion (HSIL) who attended our gynaecology department for opportunistic screening of HPV infection. Study design. Cervical samples were taken in a PreservCyt vial (Cytyc Corporation, Boxborough, MA). Hybrid capture assay was carried out following the manufacturer's instructions (Digene Corp., Gaithersburg, MD). All samples were further studied with polymerase chain reaction (PCR) (Linear Array HPV Genotyping Test, Roche Diagnostics, Mannheim, Germany). Results. Genotype 16 was the most prevalent HR-HPV in the three groups, 17.8% in the patients with normal cytology results, 22.3% in the LSIL group, and 60% in the HSIL group. Genotype 18 had a very low prevalence in all groups. Other HR-HPV genotypes such as genotype 31, genotype 58 and genotype 52 were found in significant numbers in HSIL patients. Discussion. Our data show that genotypes 16, 31, 58, and 52 are the most prevalent HR-HPV in cervical samples with severe intraepithelial lesion in Spain. There may be some geographical variation in prevalence of carcinogenic types, and it must be considered for designing diagnostic tests and vaccine.

  15. Distribution of AdeABC efflux system genes in genotypically diverse strains of clinical Acinetobacter baumannii.

    Science.gov (United States)

    Wieczorek, Piotr; Sacha, Paweł; Czaban, Sławomir; Hauschild, Tomasz; Ojdana, Dominika; Kowalczuk, Oksana; Milewski, Robert; Poniatowski, Bogusław; Nikliński, Jacek; Tryniszewska, Elżbieta

    2013-10-01

    Acinetobacter baumannii has emerged as a highly problematic hospital-associated pathogen. Different mechanisms contribute to the formation of multidrug resistance in A. baumannii, including the AdeABC efflux system. Distribution of the structural and regulatory genes encoding the AdeABC efflux system among genetically diverse clinical A. baumannii strains was achieved by using PCR and pulsed-field gel electrophoresis techniques. The distribution of adeABRS genes is extremely high among our A. baumannii strains, except the adeC gene. We have observed a large proportion of strains presenting multidrug-resistance phenotype for several years. The efflux pump could be an important mechanism in these strains in resistance to antibiotics.

  16. Distribution of dengue vectors in neighborhoods with different urbanization types of Manaus, state of Amazonas, Brazil

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    Claudia M Ríos-Velásquez

    2007-08-01

    Full Text Available Aedes aegypti and Ae. albopictus are vectors of dengue viruses, which cause endemic disease in the city of Manaus, capital of the state of Amazonas, Brazil. More than 53 thousand cases have been registered in this city since the first epidemic in 1998. We evaluated the hypothesis that different ecological conditions result in different patterns of vector infestation in Manaus, by measuring the infestation level in four neighborhoods with different urbanization patterns, during the rainy (April, dry (August, and transitional (November seasons. Ae. aegypti predominated throughout the study areas and sampling periods, representing 86% of all specimens collected in oviposition traps. High frequencies of houses positive for both species were observed in all studied sites, with Ae. aegypti present in more than 84% of the houses in all seasons. Ae. albopictus, on the other hand, showed more spatial and temporal variation in abundance. We found no association between infestation level and house traits. This study highlights the homogeneity of dengue vector distribution in Manaus.

  17. Phlebotominae distribution in Janaúba, an area of transmission for visceral leishmaniasis in Brazil

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    Érika Monteiro Michalsky

    2009-02-01

    Full Text Available In Brazil, visceral leishmaniasis (VL is caused by Leishmania chagasi parasites that are transmitted to man through the bites of infected females of Lutzomyia longipalpis sand flies. In order to evaluate transmission risk and to clarify the epidemiology of this tropical disease, studies focused on the vector and favorable environmental conditions are of fundamental importance. In this work, we surveyed the phlebotomine sand fly fauna in Janaúba, a Brazilian municipality that is endemic for VL. During a two-year period, entomological captures were performed monthly in 15 districts with high, moderate and low profiles of VL transmission. A total of 14,591 phlebotomine sand flies were captured (92% L. longipalpis, with a predominance of males. Most specimens were captured in the peri-domicile setting, although the number of specimens captured in the intra-domicile setting emphasises the anthropophilic behaviour of this insect. The population density of L. longipalpis was modulated by climate variations, particularly with clear increases immediately after the rainy season. However, the pattern of distribution did not coincide with the occurrence of human or canine cases of VL. This suggests that the eco-epidemiology of VL is particular to each area of transmission and must be taken into account during the design of public health control actions.

  18. Phlebotominae distribution in Janaúba, an area of transmission for visceral leishmaniasis in Brazil.

    Science.gov (United States)

    Michalsky, Erika Monteiro; França-Silva, João Carlos; Barata, Ricardo Andrade; Lara e Silva, Fabiana de Oliveira; Loureiro, Angélica Marciano Fernandes; Fortes-Dias, Consuelo Latorre; Dias, Edelberto Santos

    2009-02-01

    In Brazil, visceral leishmaniasis (VL) is caused by Leishmania chagasi parasites that are transmitted to man through the bites of infected females of Lutzomyia longipalpis sand flies. In order to evaluate transmission risk and to clarify the epidemiology of this tropical disease, studies focused on the vector and favorable environmental conditions are of fundamental importance. In this work, we surveyed the phlebotomine sand fly fauna in Janaúba, a Brazilian municipality that is endemic for VL. During a two-year period, entomological captures were performed monthly in 15 districts with high, moderate and low profiles of VL transmission. A total of 14,591 phlebotomine sand flies were captured (92% L. longipalpis), with a predominance of males. Most specimens were captured in the peri-domicile setting, although the number of specimens captured in the intra-domicile setting emphasises the anthropophilic behaviour of this insect. The population density of L. longipalpis was modulated by climate variations, particularly with clear increases immediately after the rainy season. However, the pattern of distribution did not coincide with the occurrence of human or canine cases of VL. This suggests that the eco-epidemiology of VL is particular to each area of transmission and must be taken into account during the design of public health control actions.

  19. Spatial distribution and diet of Cephalopholis fulva (Ephinephelidae at Trindade Island, Brazil

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    Flavio do Nascimento Coelho

    Full Text Available In this study we analyze the population structure and diet of the coney Cephalopholis fulva at Trindade Island, Brazil, through direct observation with SCUBA diving in 11 reef sites around the Island, up to 50 m deep. Diet was based on 77 individuals collected with speargun. Mean population density and biomass were estimated at 29 individuals/100 m² and 13 kg/100 m², respectively. This species is regularly distributed along the costal environments of the Trindade Island, with no significant differences in densities and biomass detected among the different collection habitats (reef crest, reef slope, and reef plateau. However, significantly higher densities were observed micro-habitats with greater structural complexity, which may offer more shelter and food to C. fulva. Four food item groups were identified from the gut contents of C. fulva: Annelida, Crustacea, Teleostei, and Testudinata. It is the first record of predation of the green turtle Chelonia mydas hatchlings by the coney. Trindade Island seems to present the densest concentration of C. fulva in all Brazilian and Caribbean ecosystems inhabited by this species. Scarcity of competitors, predators, and fishing pressure may explain the high densities observed in the Island.

  20. Distribution of heavy metals in sediments of a tropical reservoir in Brazil: Sources and fate

    Science.gov (United States)

    Souza, Vinícius A.; Wasserman, Julio C.

    2015-11-01

    Juturnaíba Lake has been utilized for the captation of water to supply over one million people in the Lakes Region, Rio de Janeiro, Brazil. The water treatment plant sludges have been directly disposed in the margins of the lake, constituting a potential threat for the water quality. The aim of the present work was to evaluate the geochemical processes that control concentrations and mobility of metals (Al, Cu, Fe, Mn, Pb and Zn) in the sediments of the Juturnaíba Reservoir, and whether they are affected by the disposal of the water treatment sludges. Sediment samples were collected from thirty-two stations in the Juturnaíba lake, and the total concentration of metals (pseudo-total concentrations), granulometry, total organic carbon, total nitrogen and total phosphorus concentrations were evaluated. Distribution maps and attenuation models were constructed. The results show that the metals concentrations are affected by the presence of large stands of the aquatic macrophyte Egeria sp. (Hydrocharitaceae). The sludges from the water treatment plants do not seem to contribute to the contamination of the sediments, probably because the mobility of the contaminants in the dumping piles is low.

  1. Skeletonema potamos (Bacillariophyta in Patos Lagoon, southern Brazil: Taxonomy and distribution

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    Lezilda Carvalho Torgan

    2011-07-01

    Full Text Available We analyzed the morphogical features of the centric diatom Skeletonema potamos (Weber Hasle from Patos Lagoon, southern Brazil, using light and scanning electron microscopy. We discuss the abundance and dis- tribution of the species along the salinity gradient in the lagoon. Samples from the water surface were taken monthly at eight stations along the longitudinal axis of the lagoon, from December 1987 to December 1988. The species were counted by the Utermöhl method, and the density (cells.mL-1 was estimated based on live cells. The morphology of the specimens agrees with the type, from the Little Miami River, Ohio, U.S.A., except for the convexity and the pattern of granules on the valve face. Skeletonema potamos was found in the winter and spring, and was distributed in the limnetic, oligohaline and mesohaline zones of the lagoon. The cell con- centration appeared to be controlled by the salinity, with a significant negative correlation observed. Light and competition probably also influence the development of S. potamos populations in the Patos Lagoon.

  2. Seasonal Variation and Frequency Distribution of Ectoparasites in Crossbreed Cattle in Southeastern Brazil

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    Maria do Socorro Ferraz da Costa

    2014-01-01

    Full Text Available The aims of this study were to evaluate the seasonal variation and frequency distribution of Rhipicephalus (Boophilus microplus, Haematobia irritans, and Dermatobia hominis on crossbred heifers under field conditions in the northeast of Minas Gerais state, southeastern Brazil. From November 2007 to September 2009 (23 months, 40 heifers aged 16.6±2.4 months were divided into groups A (1/4 Holstein × 3/4 Gir and B (1/2 Holstein × 1/2 Gir and had the monthly infestation estimated along with the climatic conditions. The mean maximum and minimum temperatures were 28.5 and 19°C, respectively. The ectoparasites were present on animals in all months of the year. The levels of ticks on the animals were low (3.0±0.2 ticks/animal, with the highest density in midwinter. The temperature was the climatic factor that most influenced the tick levels. The population of H. irritans (13.9±0.3 flies/animal and D. hominis (1.5±0.2 larvae/animal on heifers was more influenced by rainfall and exhibited two population peaks during the year. 1/2 Holstein heifers harbored significantly more H. irritans and D. hominis than 1/4 Holstein heifers. The results are discussed considering the most appropriate periods to apply ectoparasiticides and the genetic make-up of the animals.

  3. Natural radionuclides distribution in the shelf and upper slope of southeast Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Cordero, Luisa M.; Figueira, Rubens C.L., E-mail: luisa.cordero@usp.b, E-mail: rfigueira@usp.b [Universidade de Sao Paulo (USP), SP (Brazil). Inst. Oceanografico. Lab. de Quimica Inorganica Marinha; Mahiques, Michel M., E-mail: mahiques@usp.b [Universidade de Sao Paulo (USP), SP (Brazil). Inst. Oceanografico. Lab. de Analise de Materia Organica; Tessler, Moyses G., E-mail: mgtessle@usp.b [Universidade de Sao Paulo (USP), SP (Brazil). Inst. Oceanografico. Lab. de Espectrometria Gama

    2009-07-01

    In recent decades, Oceanography has been using a variety of radionuclides as tracers to understand the ocean dynamic processes, handling and disposal of sediments of seabed. In this context, the determination of natural radionuclides distributions ({sup 238}U, {sup 232}Th and {sup 40}K) has been carried out with sediments samples from the shelf and upper slope off Southeast Brazil using a gamma spectrometry technique. The samples were sliced into strata of 2 cm, dried, ground and properly packed to be analysed. The concentration of activities was performed in a hyperpure Ge detector with a resolution of 1,9 keV for the peak of 1332,3 keV of {sup 60}Co, model GEM50P by EGG and ORTEC. The study area is located between latitudes 28 deg 40'S and 23 deg 00'S and extends from Cabo Frio (RJ) to Cabo de Santa Marta Grande (SC). The activity concentrations varied from 0,6 to 52,8 BqKg{sup -1} for {sup 238}U, from 1,6 to 50,9BqKg{sup -1} for {sup 232}Th and from 65,4 to 873,3 BqKg{sup -1} for {sup 40}K. From these results it is possible to establish a correlation between the depositional area dynamics and the samples size parameters. (author)

  4. SPATIAL DISTRIBUTION OF PULMONARY TUBERCULOSIS IN URBAN AREAS: A CASE FROM BELÉM, BRAZIL

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    Marco Aurélio Arbage LOBO

    2016-12-01

    Full Text Available The precise location of areas with high incidence of pulmonary tuberculosis (TB is important to improve public health actions. Official data records of the addresses and neighborhoods where the infected people live allow the mapping of the disease on this spatial scale. However, great socioeconomic diversity often exists inside neighborhoods, wherein high- and low-income families reside. This situation hampers the location of those areas that require close attention. Objective: This study aimed to estimate the risk of pulmonary TB infections in census tracts in Belém City (Brazil from data on neighborhoods. Methods: A partial least-squares regression model was constructed in the scale of neighborhoods based on the record of addresses of TB-infected people and socioeconomic data from official sources. The model was then slightly modified and used to estimate the risk of TB prevalence in urban census tracts. The results were mapped using a geographical information system. Results: The percentages of explained variance of the set of independent variables and dependent variable were 86.4% and 30.2%, respectively. These values indicated that the model was acceptable for its purpose. Conclusion: The model’s results were consistent with the spatial distribution of socioeconomic and environmental characteristics of Belém City.

  5. Altitudinal distribution of birds in a mountainous region in southeastern Brazil

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    Francisco Mallet-Rodrigues

    2010-08-01

    Full Text Available We studied the altitudinal distribution of 426 bird species in the Serra dos Órgãos, a mountainous region in southeastern Brazil. Thirty-four localities were visited between 1991 and 2009. Our study revealed a decline in bird species richness with elevation, although a smaller number of species was recorded at lower altitudes (below 300 m possibly due to local extinctions caused by the intense human occupation of the region. A less diverse avifauna was found above 2,000 m, with only one species (Caprimulgus longirostris recorded exclusively in this altitudinal range. Most endemic species were found between 300 and 1,200 m, but the endemism was more significant at higher altitudes. Nearly half of the birds found above 1,400 m were endemic species. Most of the threatened species from the state of Rio de Janeiro recorded in our study were found below 1,200 m, but no significant difference was found between the proportions of threatened species among different altitudinal ranges. Species of seventeen genera have exhibited some replacement (sometimes with partial overlap along altitudinal gradients.

  6. Spatial distribution of metals in soil samples from Zona da Mata, Pernambuco, Brazil using XRF technique

    Energy Technology Data Exchange (ETDEWEB)

    Fernandez, Zahily Herrero; Santos Junior, Jose Araujo dos; Amaral, Romilton dos Santos; Menezes, Romulo Simoes Cezar; Santos, Josineide Marques do Nascimento; Bezerra, Jairo Dias; Damascena, Kennedy Francys Rodrigues, E-mail: zahily1985@gmail.com, E-mail: jaraujo@ufpe.br, E-mail: romilton@ufpe.br, E-mail: rmenezes@ufpe.br, E-mail: neideden@hotmail.com, E-mail: jairo.dias@ufpe.br, E-mail: kennedy.eng.ambiental@gmail.com [Universidade Federal de Pernambuco (UFPE), Recife, PE (Brazil). Centro de Tecnologia e Geociencias. Departamento de Energia Nuclear; Alvarez, Juan Reinaldo Estevez, E-mail: jestevez@ceaden.cu [Centro de Aplicaciones Tecnologicas y Desarrollo Nuclear (CEADEN), Havana (Cuba); Silva, Edvane Borges da, E-mail: edvane.borges@pq.cnpq.br [Universidade Federal de Pernambuco (UFPE), Vitoria de Santo Antao, PE (Brazil). Nucleo de Biologia; Franca, Elvis Joacir de; Farias, Emerson Emiliano Gualberto de, E-mail: ejfranca@cnen.gov.br, E-mail: emersonemiliano@yahoo.com.br [Centro Regional de Ciencias Nucleares do Nordeste (CRCN-NE/CNEN-PE), Recife, PE (Brazil); Silva, Alberto Antonio da, E-mail: alberto.silva@barreiros.ifpe.edu.br [Instituto Federal de Educacao, Ciencia e Tecnologia de Pernambuco (IFPE), Barreiros, PE (Brazil)

    2015-07-01

    Soil contamination is today one of the most important environmental issues for society. In the past, soil pollution was not considered as important as air and water contamination, because this was more difficult to be controlled, becoming an important topic in studies of environmental protection worldwide. Based on this, this paper provides information on the determination of metals in soil samples collected in Zona da Mata, Pernambuco, Brazil, where normally the application of pesticides, insecticides and other agricultural additives are used in a disorderly manner and without control. A total of 24 sampling points were monitored. The analysis of Mn, Fe, Ni, Zn, Br, Rb, Sr, Pb, Ti, La, Al, Si and P were performed using Energy Dispersive X-Ray Fluorescence. In order to assess the development of analytical method, inorganic Certified Reference Materials (IAEA-SOIL-7 and SRM 2709) were analyzed. In each sampling site, the geoaccumulation index were calculated to estimate the level of metal contamination in the soil, this was made taking into account the resolution 460 of the National Environmental Council (CONAMA in Portuguese). The elemental distribution patterns obtained for each metal were associated with different pollution sources. This assessment provides an initial description of pollution levels presented by metals in soils from several areas of Zona da Mata, providing quantitative evidence and demonstrating the need to improve the regulation of agricultural and industrial activities. (author)

  7. Exchange rate misalignment, capital accumulation and income distribution: Theory and evidence from the case of Brazil

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    Oreiro José Luis

    2013-01-01

    Full Text Available This article analyzes the relationship between economic growth, income distribution and real exchange rate within the neo-Kaleckian literature, through the construction of a nonlinear macrodynamic model for an open economy in which investment in fixed capital is assumed to be a quadratic function of the real exchange rate. The model demonstrates that the prevailing regime of accumulation in a given economy depends on the type of currency misalignment, so if the real exchange rate is overvalued, then the regime of accumulation will be profit-led, but if the exchange rate is undervalued, then the accumulation regime is wage-led. Subsequently, the adherence of the theoretical model to data is tested for Brazil in the period 1994/Q3-2008/Q4. The econometric results are consistent with the theoretical non-linear specification of the investment function used in the model, so that we can define the existence of a real exchange rate that maximizes the rate of capital accumulation for the Brazilian economy. From the estimate of this optimal rate we show that the real exchange rate is overvalued in 1994/Q3- 2001/Q1 and 2005/Q4-2008/Q4 and undervalued in the period 2001/Q2-2005/Q3. As a direct corollary of this result, it follows that the prevailing regime of accumulation in the Brazilian economy after the last quarter of 2005 is profit-led.

  8. Fasciola hepatica IN BOVINES IN BRAZIL: DATA AVAILABILITY AND SPATIAL DISTRIBUTION

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    Sita C. Bennema

    2014-01-01

    Full Text Available Fasciolosis is a disease of importance for both veterinary and public health. For the first time, georeferenced prevalence data of Fasciola hepatica in bovines were collected and mapped for the Brazilian territory and data availability was discussed. Bovine fasciolosis in Brazil is monitored on a Federal, State and Municipal level, and to improve monitoring it is essential to combine the data collected on these three levels into one dataset. Data were collected for 1032 municipalities where livers were condemned by the Federal Inspection Service (MAPA/SIF because of the presence of F. hepatica. The information was distributed over 11 states: Espírito Santo, Goiás, Minas Gerais, Mato Grosso do Sul, Mato Grosso, Pará, Paraná, Rio de Janeiro, Rio Grande do Sul, Santa Catarina and São Paulo. The highest prevalence of fasciolosis was observed in the southern states, with disease clusters along the coast of Paraná and Santa Catarina and in Rio Grande do Sul. Also, temporal variation of the prevalence was observed. The observed prevalence and the kriged prevalence maps presented in this paper can assist both animal and human health workers in estimating the risk of infection in their state or municipality.

  9. Avaliação de genótipos de mandioca em diferentes épocas de colheita no Estado do Acre Evaluation of cassava genotypes in different harvesting times in the State of Acre, Brazil

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    Hélia Alves de Mendonça

    2003-06-01

    Full Text Available No Estado do Acre, a mandioca tem grande importância econômica e social, constituindo-se num dos principais produtos básicos da alimentação da população, principalmente na forma de farinha, mas com grande potencial também para o consumo in natura. O objetivo deste trabalho foi avaliar genótipos de mandioca em diferentes épocas de colheita no Estado do Acre. Foram avaliados dez genótipos de mandioca em quatro épocas de colheita utilizando o delineamento de blocos casualizados com quatro repetições, em esquema de parcelas subdivididas, sendo as épocas as parcelas e os genótipos as subparcelas, nas safras 1999/2000 e 2000/2001. Os genótipos MD-33 e Pão apresentaram alto rendimento de raízes e resistência à podridão radicular; o primeiro é indicado para a industrialização e o segundo para o consumo in natura. A colheita aos 14 meses após o plantio proporcionou o maior rendimento de raízes, mas apresentou maior incidência de podridão radicular. O teor de amido e a incidência de podridão radicular variaram em razão dos genótipos e épocas de colheita avaliados.The cassava has a great economical and social importance as a basic food for the population of the State of Acre, Brazil. It is used to produce flour and it has a great potential for fresh consumption too. The aim of this work was to evaluate genotypes of cassava at different harvesting times in the State of Acre, Brazil. Ten cassava genotypes were evaluated at four harvesting times in a randomized block experimental design, arranged in a split-plot scheme with four replications, with the harvesting time in the plots and the genotypes in the subplots, during the 1999/2000 and 2000/2001 seasons. The MD-33 and Pão genotypes presented high root yield and resistance to the root rot. The MD-33 genotype is indicated for industrialization and the Pão genotype for fresh consumption. Harvesting 14 months after planting resulted in the highest root yield, but presented

  10. Serum uric acid distribution according to SLC22A12 W258X genotype in a cross-sectional study of a general Japanese population

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    Okada Rieko

    2011-03-01

    Full Text Available Abstract Background Although SLC22A12 258X allele was found among those with hypouricemia, it was unknown that serum uric acid distribution among those with SLC22A12 258X allele. This study examined serum uric acid (SUA distribution according to SLC22A12 W258X genotype in a general Japanese population. Methods Subjects were 5,023 health checkup examinees (3,413 males and 1,610 females aged 35 to 69 years with creatinine SLC22A12 W258X was genotyped with a polymerase chain reaction with confronting two-pair primers. Results The genotype frequency was 4,793 for WW, 225 for WX, and 5 for XX, which was in Hardy-Weinberg equilibrium (p = 0.164 with X allele 0.023 (95% confidence interval [0.021-0.027]. Mean (range SUA was 6.2 (2.1-11.4 mg/dL for WW, 3.9 (0.8-7.8 mg/dL for WX, and 0.8 (0.7-0.9 mg/dL for XX among males, and 4.5 (1.9-8.9 mg/dL, 3.3 (2.0-6.5 mg/dL, and 0.60 (0.5-0.7 mg/dL among females, respectively. Six individuals with SUA less than 1.0 mg/dL included two males with XX genotype, one male with WX genotype, and three females with XX genotype. Subjects with WX genotype were 14 (77.8% of 18 males with a SUA of 1.0-2.9 mg/dL, and 28 (34.6% of 81 females with the same range of SUA. The corresponding values were 131 (25.1% of 522 males and 37 (3.5% of 1,073 females for SUA 3.0-4.9 mg/dL, and 8 (0.4% of 2,069 males and 5 (1.1% of 429 females for SUA 5.0-6.9 mg/dL. The X allele effect for SUA less than 3 mg/dL was significantly (p Conclusions Although SLC22A12 W258X was a determining genetic factor on SUA, SUA of those with WX genotype distributed widely from 0.8 mg/dL to 7.8 mg/dL. It indicated that other genetic traits and/or lifestyle affected SUA of those with WX genotype, as well as those with WW genotype.

  11. Spatial distribution of schistosomiasis and geohelminthiasis cases in the rural areas of Pernambuco, Brazil

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    Verônica Santos Barbosa

    2012-10-01

    Full Text Available INTRODUCTION: The prevalence and intensity of geohelminth infections and schistosomiasis remain high in the rural areas of Zona da Mata, Pernambuco (ZMP, Brazil, where these parasites still represent a significant public health problem. The present study aimed to spatially assess the occurrences of schistosomiasis and geohelminthiasis in the ZMP. METHODS: The ZMP has a population of 1,132,544 inhabitants, formed by 43 municipalities. An ecological study was conducted, using secondary data relating to positive human cases and parasite loads of schistosomiasis and positive human cases of geohelminthiasis that were worked up in Excel 2007. We used the coordinates of the municipal headquarters to represent the cities which served as the unit of analysis of this study. The Kernel estimator was used to spatially analyze the data and identify distribution patterns and case densities, with analysis done in ArcGIS software. RESULTS: Spatial analysis from the Kernel intensity estimator made it possible to construct density maps showing that the northern ZMP was the region with the greatest number of children infected with parasites and the populations most intensely infected by Schistosoma mansoni. In relation to geohelminths, there was higher spatial distribution of cases of Ascaris lumbricoides and Trichuris trichiura in the southern ZMP, and greater occurrence of hookworms in the northern/central ZMP. CONCLUSIONS: Despite several surveys and studies showing occurrences of schistosomiasis and geohelminthiasis in the ZMP, no preventive measures that are known to have been effective in decreasing these health hazards have yet been implemented in the endemic area.

  12. Spatial distribution of mollusks in the intertidal zone of sheltered beaches in southeastern of Brazil

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    Eliane P. de Arruda

    2003-06-01

    Full Text Available The spatial distribution of mollusks in the intertidal zone was examined monthly from August 1995 through July 1997, in Enseada, Barra Velha and Araçá beaches in southeastern of Brazil. One study sector was selected in Enseada and Barra Velha, and two sectors in Araçá (Araçá I and Araçá II. The sectors were 10 m wide and equivalent in length to the width of the intertidal zone. Each sector was divided into three horizontal levels: lower, middle and upper, where the samples were taken with a cylinder corer with a base area of 0.16 m². In order to characterize the intertidal environment in these areas, some environmental variables were analyzed. In general, the mollusks were distributed in the sectors as follows: Enseada - Olivella minuta (Link, 1807 in the lower level and Tagelus plebeius (Lightfoot, 1786 in the upper level; Araçá I - O. minuta in the lower level, Tellina lineata Turton, 1819 and Anomalocardia brasiliana (Gmelin, 1791 in the middle levels; Araçá II - Cerithium atratum (Born, 1778 in the lower level, O. minuta in the lower and middle levels, and A. brasiliana and Corbula caribaea Orbigny, 1842 in the middle level; Barra Velha - Tagelus divisus (Spengler, 1794, Lucina pectinata (Gmelin, 1791 and Tellina versicolor De Kay, 1843 in the lower level, and A. brasiliana and Macoma constricta (Brugüìere, 1792 in the upper level. The intertidal zone of the study sectors could be divided into two biological zones: the upper zone, where T. plebeius, A. brasiliana and M. constricta were more abundant; and the lower zone, where O. minuta, C. atratum, T. lineata, T. versicolor, C. caribaea, T. divisus and L. pectinata were abundant.

  13. Local distribution and abundance of Cardisoma guanhumi Latreille, 1928 (Brachyura: Gecarcinidae) in southern Brazil.

    Science.gov (United States)

    Oliveira-Neto, J F; Batista, E; Metri, R; Metri, C B

    2014-02-01

    The blue land crab, Cardisoma guanhumi Latreille, 1828 (Brachyura: Gecarcinidae) is officially included in the list of over-exploited species in Brazil, although still abundantly found in the state of Santa Catarina, the southern limit of its distribution. This species was found in forested areas, gardens, and grassy areas, including crabs with carapace width larger than 80mm. The existence of this population with these characteristics is surprising, since there is only one official record of the species in the southern region. The objectives of this study are to estimate the abundance and occupation patterns of C. guanhumi in this region. Correlations with conservation were discussed. The absolute abundance of crabs in the middle of summer activity was established for an area of 100,000 m2. A smaller area was mapped and divided into sampling units for statistical analyses. We distributed approximately 240 crabs in a forested area of about 3,000 m2 and 150 crabs in grassy areas (90,000 m2). The statistical test of Kruskal-Wallis test showed that there are significant differences between the sizes of the openings of the galleries inside the forest and that located in grassy areas. In the forest, the openings tend to be much larger. Burrows were found at a distance of 150 metres from the channel. The number of galleries was higher in the forested area, although the burrows were more densely grouped in grassy areas. Although C. guanhumi seems to be adjusting well to changes caused by human occupation, small forested areas are more conducive to growth and conservation of this species.

  14. Water pollution and distribution of the black fly (Diptera: Simuliidae) in the Atlantic Forest, Brazil.

    Science.gov (United States)

    Docile, Tatiana N; Figueiró, Ronaldo; Gil-Azevedo, Leonardo H; Nessimian, Jorge L

    2015-09-01

    Black flies have medical importance because some species are vectors of the unenocerciasis and Mansonelosis, nevertheless, their ecology and potential use as bioindicators is still poorly studied in the Neotropical Region. In Brazil, bioindicators use is strongly focused in a multimetrical ecological index approach; this way, we investigated the black fly spatial distribution, in relation to abiotic factors correlated to water quality, to provide baseline information for their utilization as standalone indicators of lotic systems integrity. We have tested the hypothesis that environmental changes related to urbanization, lead to decreased abundance and loss in the number of species of the black fly fauna. The sampling was conducted in 10 urban and 10 preserved streams during the dry season (August-September) of 2012, in the mountainous region of Teres6polis, State of Rio de Janeiro, Brazil. The streams were characterized for their environmental integrity conditions and physico-chemical properties of water. In each stream, five different rapid points were sampled in a section of 50 meters, 10 meters apart from each other. The black flies were sampled with a kick-net sampler on rocky substrates. The material was separated and the larvae were sorted in morphotypes, and later, the final instar specimens were dissected and identified with the help of taxonomical literature at species level. A total abundance of 488 larvae from nine species were collected, 5 (1.02 %) in extremely impacted streams, 470 (96.31 %) in intermediate streams and 13 (2.66 %) in preserved streams. The visual evaluation (HII) differed in relation to the water physico-chemical evaluation, in which more variation in the characterization of the sampling sites was observed. In Canonical Correspondence Analysis Simulium subpallidum, S. inscrustatum and S. pertinax were significantly associated with intermediate values of most of the variables, and then to intermediate impacted sites. On the other hand

  15. Serotype and genotype distribution among invasive Streptococcus pneumoniae isolates in Colombia, 2005-2010.

    Science.gov (United States)

    Parra, Eliana L; Ramos, Viviana; Sanabria, Olga; Moreno, Jaime

    2014-01-01

    In Colombia, a laboratory-based surveillance of invasive Streptococcus pneumoniae isolates as part of SIREVA II PAHO has been conducted since 1994. This study describes the serotype distribution, antimicrobial resistance, and genetic relationships of pneumococcal isolates recovered in Colombia from 2005 to 2010. In this study, demographic data of invasive S. pneumoniae isolates were analyzed, and antimicrobial susceptibility patterns were determined. Pulse field gel electrophoresis (n = 629) and multilocus sequence typing (n = 10) were used to determine genetic relationship of isolates with minimal inhibitory concentration to penicillin ≥0.125 µg/mL. A total of 1775 isolates of S. pneumoniae were obtained. Fifteen serotypes accounted for 80.7% of isolates. Serotype 14 (23.1%) was the most frequent in the general population. Penicillin resistance was 30.7% in meningitis and 9.0% in non-meningitis. Clones Spain(6B)ST90, Spain(9V)ST156, Spain(23F)ST81, and Colombia(23F)ST338 were associated to isolates. Additionally, serotype 6A isolates were associated with ST460 and ST473, and 19A isolates with ST276, ST320, and ST1118. In conclusion, the surveillance program provided updated information of trends in serotype distribution, antimicrobial resistance and the circulation of clones in invasive pneumococcal diseases. These results could be helpful to understand the epidemiology of S. pneumoniae in Colombia, and provide a baseline to measure the impact of vaccine introduction.

  16. SPATIAL DISTRIBUTION OF LYMNAEIDAE (MOLLUSCA, BASOMMATOPHORA, INTERMEDIATE HOST OF Fasciola hepatica LINNAEUS, 1758 (TREMATODA, DIGENEA IN BRAZIL

    Directory of Open Access Journals (Sweden)

    Camilla Medeiros

    2014-06-01

    Full Text Available Snails of the family Lymnaeidae act as intermediate hosts in the biological cycle of Fasciola hepatica, which is a biological agent of fasciolosis, a parasitic disease of medical importance for humans and animals. The present work aimed to update and map the spatial distribution of the intermediate host snails of F. hepatica in Brazil. Data on the distribution of lymnaeids species were compiled from the Collection of Medical Malacology (Fiocruz-CMM, CPqRR, Collection of Malacology (MZUSP, “SpeciesLink” (CRIA network and through systematic surveys in the literature. Our maps of the distribution of lymnaeids show that Pseudosuccinea columella is the most common species and it is widespread in the South and Southeast with few records in the Midwest, North and Northeast regions. The distribution of the Galba viatrix, G. cubensis and G. truncatula showed a few records in the South and Southeast regions, they were not reported for the Midwest, North and Northeast. In addition, in the South region there are a few records for G. viatrix and one occurrence of Lymnaea rupestris. Our findings resulted in the first map of the spatial distribution of Lymnaeidae species in Brazil which might be useful to better understand the fasciolosis distribution and delineate priority areas for control interventions.

  17. Epidemiological Scenario of Dengue in Brazil

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    Rafaelle C. G. Fares

    2015-01-01

    Full Text Available Dengue is the most important reemerging mosquito-borne viral disease worldwide. It is caused by any of four Dengue virus types or serotypes (DENV-1 to DENV-4 and is transmitted by mosquitoes from the genus Aedes. Ecological changes have favored the geographic expansion of the vector and, since the dengue pandemic in the Asian and Pacific regions, the infection became widely distributed worldwide, reaching Brazil in 1845. The incidence of dengue in Brazil has been frequently high, and the number of cases in the country has at some point in time represented up to 60% of the dengue reported cases worldwide. This review addresses vector distribution, dengue outbreaks, circulating serotypes and genotypes, and prevention approaches being utilized in Brazil.

  18. Spatial distribution of triatomines (Reduviidae: Triatominae in urban areas of the city of Salvador, Bahia, Brazil

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    Karine de Souza O. Santana

    2011-05-01

    Full Text Available Environmental changes have a strong influence on the emergence and/or reemergence of infectious diseases. The city of Salvador, Brazil -currently the focus of a housing boom linked to massive deforestation- is an example in point as the destruction of the remaining areas of the Atlantic Forest around the city has led to an increased risk for Chagas disease. Human domiciles have been invaded by the triatomine vectors of Trypansoma cruzi, the flagellate protozoan causing Chagas disease, a problem of particular concern in urban/suburban areas of the city such as the Patamares sector in the north-east, where numbers of both the vector and human cases of the disease have increased lately. To control and prevent further deterioration of the situation, the control programme for Chagas disease, developed by the Bahia Center for Zoonosis Control, has divided the area into a grid of designated surveillance units (ZIs that are subjected to vector examination. In six out of 98 of these ZIs, 988 triatomes were collected and georeferenced during the 3-year period between 2006 and 2009. The hottest months, that are also generally the driest, showed the highest numbers of triatomines with Triatoma tibiamaculata being the predominant species (98.3% with Panstrongylus geniculatus present only occasionally (0.6%. Fifty-four percent of all triatomines captured were found inside the homes, and 48.6% out of 479 individuals in the affected ZIs selected for analysis tested positive for T. cruzi infection. The study presented here is a pioneering initiative to map the spatial distribution of triatomines based on geographical information systems with the additional aim of contributing to an expanded knowledge-base about T. cruzi and its vectors in urban areas and raise public health awareness of the risks involved.

  19. Coexistence and geographical distribution of Leguminosae in an area of Atlantic forest in the semi-arid region of Brazil

    Institute of Scientific and Technical Information of China (English)

    Jacira R. LIMA; Vidal F. MANSANO; Francisca S. ARA(U)JO

    2012-01-01

    Understanding the factors that affect plant species distribution and coexistence in areas with high plant species diversity is a challenge for ecologists.According to some authors,species occupy specific niches,but for others,species coexistence and geographical distribution patterns are random.Floristic composition of the family Leguminosae was studied on moist and dry slopes of the Baturité mountains in semi-arid northeastern Brazil and was compared with findings for other plant formations elsewhere in Brazil.Substantial floristic differences were found between the moist windward and dry leeward slopes of the Baturité mountains despite their close geographical proximity.The leeward slope was slightly more diverse than the windward slope.Similarity analyses showed that the windward face is floristically allied to the Amazon forest,whereas the leeward slope is similar to other dry-area formations of northeastern Brazil,such as thorny woodland (caatinga) and seasonal forests.The strong floristic differences that were observed between the windward and leeward slopes corroborate the theory of ecological niche conservatism,which holds that species occurrence is closely linked to environmental factors,such as temperature and precipitation.

  20. Whole genome comparisons suggest random distribution of Mycobacterium ulcerans genotypes in a Buruli ulcer endemic region of Ghana.

    Science.gov (United States)

    Ablordey, Anthony S; Vandelannoote, Koen; Frimpong, Isaac A; Ahortor, Evans K; Amissah, Nana Ama; Eddyani, Miriam; Durnez, Lies; Portaels, Françoise; de Jong, Bouke C; Leirs, Herwig; Porter, Jessica L; Mangas, Kirstie M; Lam, Margaret M C; Buultjens, Andrew; Seemann, Torsten; Tobias, Nicholas J; Stinear, Timothy P

    2015-03-01

    Efforts to control the spread of Buruli ulcer--an emerging ulcerative skin infection caused by Mycobacterium ulcerans--have been hampered by our poor understanding of reservoirs and transmission. To help address this issue, we compared whole genomes from 18 clinical M. ulcerans isolates from a 30 km2 region within the Asante Akim North District, Ashanti region, Ghana, with 15 other M. ulcerans isolates from elsewhere in Ghana and the surrounding countries of Ivory Coast, Togo, Benin and Nigeria. Contrary to our expectations of finding minor DNA sequence variations among isolates representing a single M. ulcerans circulating genotype, we found instead two distinct genotypes. One genotype was closely related to isolates from neighbouring regions of Amansie West and Densu, consistent with the predicted local endemic clone, but the second genotype (separated by 138 single nucleotide polymorphisms [SNPs] from other Ghanaian strains) most closely matched M. ulcerans from Nigeria, suggesting another introduction of M. ulcerans to Ghana, perhaps from that country. Both the exotic genotype and the local Ghanaian genotype displayed highly restricted intra-strain genetic variation, with less than 50 SNP differences across a 5.2 Mbp core genome within each genotype. Interestingly, there was no discernible spatial clustering of genotypes at the local village scale. Interviews revealed no obvious epidemiological links among BU patients who had been infected with identical M. ulcerans genotypes but lived in geographically separate villages. We conclude that M. ulcerans is spread widely across the region, with multiple genotypes present in any one area. These data give us new perspectives on the behaviour of possible reservoirs and subsequent transmission mechanisms of M. ulcerans. These observations also show for the first time that M. ulcerans can be mobilized, introduced to a new area and then spread within a population. Potential reservoirs of M. ulcerans thus might include

  1. Whole genome comparisons suggest random distribution of Mycobacterium ulcerans genotypes in a Buruli ulcer endemic region of Ghana.

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    Anthony S Ablordey

    2015-03-01

    Full Text Available Efforts to control the spread of Buruli ulcer--an emerging ulcerative skin infection caused by Mycobacterium ulcerans--have been hampered by our poor understanding of reservoirs and transmission. To help address this issue, we compared whole genomes from 18 clinical M. ulcerans isolates from a 30 km2 region within the Asante Akim North District, Ashanti region, Ghana, with 15 other M. ulcerans isolates from elsewhere in Ghana and the surrounding countries of Ivory Coast, Togo, Benin and Nigeria. Contrary to our expectations of finding minor DNA sequence variations among isolates representing a single M. ulcerans circulating genotype, we found instead two distinct genotypes. One genotype was closely related to isolates from neighbouring regions of Amansie West and Densu, consistent with the predicted local endemic clone, but the second genotype (separated by 138 single nucleotide polymorphisms [SNPs] from other Ghanaian strains most closely matched M. ulcerans from Nigeria, suggesting another introduction of M. ulcerans to Ghana, perhaps from that country. Both the exotic genotype and the local Ghanaian genotype displayed highly restricted intra-strain genetic variation, with less than 50 SNP differences across a 5.2 Mbp core genome within each genotype. Interestingly, there was no discernible spatial clustering of genotypes at the local village scale. Interviews revealed no obvious epidemiological links among BU patients who had been infected with identical M. ulcerans genotypes but lived in geographically separate villages. We conclude that M. ulcerans is spread widely across the region, with multiple genotypes present in any one area. These data give us new perspectives on the behaviour of possible reservoirs and subsequent transmission mechanisms of M. ulcerans. These observations also show for the first time that M. ulcerans can be mobilized, introduced to a new area and then spread within a population. Potential reservoirs of M. ulcerans

  2. Perilestes eustaquioi sp. nov. and new distributional records of Perilestidae (Odonata in Brazil

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    Angelo B. M. Machado

    2015-10-01

    Full Text Available ABSTRACT Perilestes eustaquioi sp. nov. (holotype male deposited in ABMM collection from the state of Bahia (municipality of Una, northeastern Brazil, is described and illustrated based on one male specimen. It differs from the other species of the genus mainly by the larger size of the anteclypeus in relations to the postclypeus. Together with P. fragilis Hagen in Selys, 1862 from the state of Sergipe and P. solutus Williamson & Williamson, 1924 from the state of Ceará, these are the first records of Perilestidae from northeastern Brazil.

  3. Influence of agricultural biomass burning on aerosol size distribution and dry deposition in southeastern Brazil.

    Science.gov (United States)

    Rocha, Gisele O; Allen, Andrew G; Cardoso, Arnaldo A

    2005-07-15

    The size distributed composition of ambient aerosols is used to explore seasonal differences in particle chemistry and to show that dry deposition fluxes of soluble species, including important plant nutrients, increase during periods of biomass (sugar cane trash) burning in São Paulo State, Brazil. Measurements were made at a single site centrally located in the State's sugar cane growing region but away from the immediate vicinity of burns, so that the airsampled was representative of the regional background. Calculation of ion equivalent balances showed that during burning periods smaller particles (Aitken and accumulation modes) were more acidic, containing higher concentrations of SO4(2-), oxalate, NO3-, HCOO-, CH3COO-, and CI-, but insufficient NH4+ and K+ to achieve neutrality. Larger particles showed an anion deficit due to the presence of unmeasured ions and comprised resuspended dusts modified by accumulation of nitrate, chloride, and organic anions. Increases of resuspended particles during the burning season were attributed to release of earlier deposits from the surfaces of burning vegetation as well as increased vehicle movement on unsurfaced roads. During winter months the relative contribution of combined emissions from road transport and industry diminished due to increased emissions from biomass combustion and other activities specifically associated with the harvest period. Positive increments in annual particulate dry deposition fluxes due to higher fluxes during the sugar cane harvest were 44.3% (NH4+), 42.1% (K+), 31.8% (Mg2+), 30.4% (HCOO-), 12.8% (CI-), 6.6% (CH3COO-), 5.2% (Ca2+), 3.8% (SO4(2-)), and 2.3% (NO3-). Na+ and oxalate fluxes were seasonally invariant. Annual aerosol dry deposition fluxes (kg ha(-1)) were 0.5 (Na+), 0.25 (NH4+), 0.39 (K+), 0.51 (Mg2+), 3.19 (Ca2+), 1.34 (Cl-), 4.47 (NO3-), 3.59 (SO4(2-)), 0.58 (oxalate), 0.71 (HCOO-), and 1.38 (CH3COO-). Contributions of this mechanism to combined aerosol dry deposition and

  4. Studies on chaetognaths off Ubatuba region, Brazil: I. distribution and abundance

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    Liang Tsui Hua

    1994-12-01

    Full Text Available The distribution of chaetognath species off Ubatuba region, São Paulo State, Brazil, was studied during a program of multidisciplinary research. Ten species belonging to the genera Sagitta, Krohnita and Pterosagitta were identified. S. enflata was the dominant species followed by S.friderici and S. hispida. The species S. enflata, S. hispida, S. tenuis, S. bipunctata and JC pacifica were found in the Shelf water whereas S. serratodentata, S. minima, S. hexaptera and P. draco in the Tropical water. Only S. friderici was found associated to Coastal water. Hydrological conditions affected population structure, size of individuals and abundance.A ocorrência, distribuição, freqüência dos estágios de maturidade e comprimento total do corpo das espécies do filo Chaetognatha foram estudados. As amostras foram obtidas com o auxílio de rede Bongo, nos verões de 1985 - 1987 e invernos de 1986 e 1987, durante o Projeto "Utilização Racional do Ecossistema Costeiro da Região Tropical Brasileira, Estado de São Paulo". Dez espécies foram identificadas, sendo Sagitta enflata, S. friderici e S. hispida as espécies mais abundantes. S. enflata, S. hispida, S. tenuis, S. bipunctata e Krohnita pacifica estão associadas à água de Plataforma enquanto que S. serratodentata, S. hexaptera, S. minima e Pterosagitta draco à água Tropical. Apenas S. friderici mostrou preferência por água Costeira. Diferenças sazonais na estrutura da população, tamanho dos indivíduos, abundância e distribuição estão associados à hidrodinâmica local. Nos verões, os quetognatos apresentaram maior número de estágios maduros nas amostras examinadas, comprimentos maiores e baixa abundância como conseqüência da intrusão da água Central do Atlântico Sul que provocou uma estratificação térmica característica. Em contraposição, nestas amostras, nos invernos, a população é formada por indivíduos de estágios jovens, de comprimentos menores e grande

  5. Population structure and circulating genotypes of drug-sensitive and drug-resistant Mycobacterium tuberculosis clinical isolates in São Paulo state, Brazil.

    Science.gov (United States)

    Martins, Maria Conceição; Giampaglia, Carmen M Saraiva; Oliveira, Rosângela S; Simonsen, Vera; Latrilha, Fábio Oliveira; Moniz, Letícia Lisboa; Couvin, David; Rastogi, Nalin; Ferrazoli, Lucilaine

    2013-03-01

    São Paulo is the most populous Brazilian state and reports the largest number of tuberculosis cases in the country annually (over 18,500). This study included 193 isolates obtained during the 2nd Nationwide Survey on Mycobacterium tuberculosis Drug Resistance that was conducted in São Paulo state and 547 isolates from a laboratory based study of drug resistance that were analyzed by the Mycobacteria Reference Laboratory at the Institute Adolfo Lutz. Both studies were conducted from 2006 to 2008 and sought to determine the genetic diversity and pattern of drug resistance of M. tuberculosis isolates (MTC) circulating in São Paulo. The patterns obtained from the spoligotyping analysis demonstrated that 51/740 (6.9%) of the isolates corresponded to orphan patterns and that 689 (93.1%) of the isolates distributed into 144 shared types, including 119 that matched a preexisting shared type in the SITVIT2 database and 25 that were new isolates. A total of 77/144 patterns corresponded to unique isolates, while the remaining 67 corresponded to clustered patterns (n=612 isolates clustered into groups of 2-84 isolates each). The evolutionarily ancient PGG1 lineages (Beijing, CAS1-DEL, EAI3-IND, and PINI2) were rarely detected in São Paulo and comprised only 13/740, or 1.76%, of the total isolates; all of the remaining 727/740, or 98.24%, of the MTC isolates from São Paulo state were from the recent PGG2/3 evolutionary isolates belonging to the LAM, T, S, X, and Haarlem lineages, i.e., the Euro-American group. This study provides the first overview of circulating genotypes of M. tuberculosis in São Paulo state and demonstrates that the clustered shared types containing seven or more M. tuberculosis isolates that are spread in São Paulo state included both resistant and susceptible isolates.

  6. Rubella epidemics and genotypic distribution of the rubella virus in Shandong Province, China, in 1999-2010.

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    Changyin Wang

    Full Text Available BACKGROUND: The rubella vaccine was introduced into the immunization program in 1995 in the Shandong province, China. A series of different rubella vaccination strategies were implemented at different stages of measles control in Shandong province. METHODOLOGY/PRINCIPAL FINDINGS: The average reported incidence rate of rubella cases remained at a low level in Shandong province after 1999. However, rubella epidemics occurred repeatedly in 2001/2002, 2006, and 2008/2009. The age of the onset of rubella cases gradually increased during 1999-2010, which showed that most cases were found among the 10 years old in 1999 and among the 17 years old in 2010. Phylogenetic analysis was performed and a phylogenetic tree was constructed based on the World Health Organization standard sequence window for rubella virus isolates. All rubella viruses isolated in Shandong province were divided into 4 genotypes: 1E, 1F, 2A, and 2B. Genotype 1E viruses accounted for the majority (79% of all these viruses. The similarity of nucleotide and amino acid sequences among genotype 1E viruses was 98.2-100% and 99.1-100%, respectively. All Shandong genotype 1E strains, differed from international genotype 1E strains, belonged to cluster 1 and interdigitated with the viruses from other provinces in mainland China. The effective number of infections indicated by a bayesian skyline plot remained constant from 2001 to 2009. CONCLUSIONS/SIGNIFICANCE: The gradual shift of disease burden to an older age group occurred after a rubella-containing vaccine was introduced into the childhood immunization schedule in 1995 in Shandong province. Four genotypes, including 1E, 1F, 2A, and 2B, were found in Shandong province during 2000-2009. Genotype 1E, rather than genotype 1F, became the predominant genotype circulating in Shandong province from 2001. All Shandong genotype 1E viruses belong to the genotype 1E/cluster 1; they have constantly circulated, and co-evolved and co-circulated, with

  7. Fuel distribution logistics in Brazil: technical and economic aspects; Aspectos tecnico-economicos da logistica da distribuicao de combustiveis no Brasil

    Energy Technology Data Exchange (ETDEWEB)

    Esteves, Heloisa Borges B.; Bicalho, Lucia N. [Agencia Nacional do Petroleo, Gas Natural e Biocombustiveis (ANP), Rio de Janeiro, RJ (Brazil)

    2008-07-01

    In Brazil, there are around 250 companies operating in the automotive fuel distribution segment, responsible for the automotive fuels wholesale commercialization activity. Those companies supply not only gas stations, but also final consumers and TRR's. Their clients are distributed regionally, which requires flexibility and the ability to supply clients efficiently at the smaller possible cost, transforming variables such as the transportation alternatives adopted, the location of the storage facilities and its correct dimension on key decisions. This paper analyses the general scenario of the fuels distribution logistics in Brazil from a economic perspective, and its impacts on the companies competitive strategies. (author)

  8. Prevalence of HBV genotypes in South American immigrants affected by HBV-related chronic active hepatitis

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    Emilio Palumbo

    2007-06-01

    Full Text Available This study evaluated the prevalence of HBV infection in a population of South American immigrants in Italy and to determine in patients with detectable serum HBV-DNA the HBVgenotypes. Between April 2005 and April 2006 a total of 130 South American immigrants were tested for HBsAg. In HBsAg positive patients the biochemical and virological activity of infection and the possible presence of co-infections (HCV, HDV, HIV were evaluated. In patients with detectable serum HBV DNA, the HBV genotype was determined by INNOLiPA. Among the 130 subjects tested, 14 (10.7% resulted HBsAg positive. All were men, with a mean age of 22 years (range 19-37 and 12 (85.7 % came from Brazil, while 2 (14.3% came from Ecuador. All patients infected by HBV had elevated alanine-aminotransferase serum levels (mean level was 127 IU/L, range 74-312 and serum HBV DNA detectable by PCR-Real Time (mean level 1,037,652 copies/mL, range 19,876-1,377,648. Genotype distribution was as follow: genotype D, 9 (64.2%, genotype A, 5 (35.8%. All patients infected by genotype D came from Brazil, while among the patients infected by genotype A, three came from Brazil and two from Ecuador. Our study evidences a moderate prevalence of HBV-infection in South American immigrants with the identification of two genotypes, D and A. These genotypes are not the most prevalent in the South America and this is probably the expression of a possible geographical redistribution of HBV genotypes.

  9. Selection of common bean (Phaseolus vulgaris L.) genotypes using a genotype plus genotype x environment interaction biplot.

    Science.gov (United States)

    Corrêa, A M; Teodoro, P E; Gonçalves, M C; Santos, A; Torres, F E

    2016-08-05

    Recently, the genotype plus genotype x environment interaction (GGE) biplot methodology has been used to investigate genotype x environment interactions in several crop species, but has not been applied to the common bean (Phaseolus vulgaris L.) crop in Brazil. The aim of this study was to identify common bean genotypes that exhibit high grain yield and stability in the State of Mato Grosso do Sul, Brazil. We conducted 12 trials from 2000 to 2006 in the municipalities of Aquidauana and Dourados, and evaluated 13 genotypes in a randomized block design with three replications. Grain yield data were subjected to individual and joint analyses of variance. After analyzing the GE interaction, the adaptability and phenotypic stability of the common bean genotypes were analyzed using GGE biplot methodology. The genotypes EMGOPA-201, Xamego, and Aporé are recommended for growing in Mato Grosso do Sul, because they exhibited high grain yield and phenotypic stability.

  10. Absence of Helicobacter pylori high tetracycline resistant 16S rDNA AGA926-928TTC genotype in gastric biopsy specimens from dyspeptic patients of a city in the interior of São Paulo, Brazil

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    Suzuki Rodrigo

    2012-05-01

    Full Text Available Abstract Background Treatment effectiveness of Helicobacter pylori varies regionally and is decreasing worldwide, principally as a result of antibiotic resistant bacterium. Tetracycline is generally included in second line H. pylori eradication regimens. In Brazil, a high level of tetracycline resistance (TetR is mainly associated with AGA926-928TTC 16 S rDNA nucleotide substitutions. As H. pylori culture is fastidious, we investigated the primary occurrence of H. pylori 16 S rDNA high level TetR genotype using a molecular approach directly on gastric biopsies of dyspeptic patients attending consecutively at Hospital das Clinicas of Marilia, São Paulo, Brazil. Methods Gastric biopsy specimens of 68 peptic ulcer disease (PUD and 327 chronic gastritis (CG patients with a positive histological diagnosis of H. pylori were investigated for TetR 16 S rDNA genotype through a molecular assay based on amplification of a 16 S rDNA 545 bp fragment by polymerase chain reaction and HinfI restriction fragment length polymorphism (PCR/RFLP. Through this assay, AGA926-928TTC 16 S rDNA TetR genotype resulted in a three DNA fragment restriction pattern (281, 227 and 37 bp and its absence originated two DNA fragments (264 and 281 bp due to a 16 S rDNA conserved Hinf I restriction site. Results The 545 bp 16 S rDNA PCR fragment was amplified from 90% of gastric biopsies from histological H. pylori positive patients. HinfI RFLP revealed absence of the AGA926–928TTC H. pylori genotype and PCR products of two patients showed absence of the conserved 16 S rDNA HinfI restriction site. BLASTN sequence analysis of four amplicons (two conserved and two with an unpredicted HinfI restriction pattern revealed a 99% homology to H. pylori 16 S rDNA from African, North and South American bacterial isolates. A nucleotide substitution abolished the conserved HinfI restriction site in the two PCR fragments with unpredicted HinfI RFLP, resulting in an

  11. Distribution of genotypes C825T polymorphism G-protein β3-subunit gene in patients with hypertension depending on body mass index

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    Prystupa L.N.

    2015-09-01

    Full Text Available The aim of the study was to investigate the frequency of genotypes of C825T polymorphism G-protein β3-subunit gene (GNB3 in patients with arterial hypertension (AH, depending on body mass index (BMI. The study involved 155 patients with verified diagnosis of AH (study group and 50 healthy individuals (control group. The patients of the main group were divided into 3 groups according to BMI: I - 35 patients with normal body weight, II - 38 patients with overweight, III - 82 patients with obesity. We used general clinical, anthropometric, instrumental, molecular-genetic and statistical methods. Probability of differences in the frequency of alleles and genotypes was determined using χ² criteria. Pairwise comparison of groups was made using nonparametric Mann-Whitney test. The difference was considered statistically significant at p <0,05. Investigation of the distribution of genotypes C825T polymorphism GNB3 in patients with AH according to BMI showed statistically significant increase in the frequency of genotypes C / T and T / T and T allele in patients with overweight and obesity as compared with patients with normal body weight (χ² = 26 8; p <0.001. The risk of weight increase in AH patients with T allele carriers is 2,2 times higher than in C allele carriers. Association of C825T polymorphism of GNB3 with a tendency to obesity and overweight in patients with AH was proved.

  12. The diversity and distribution of Heliconia (Heliconiaceae in Brazil A diversidade e distribuição de Heliconia (Heliconiaceae

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    John Kress

    1990-07-01

    Full Text Available A review of the phylogenetic relationships of the Zingiberales is presented and the distribution patterns and diversity of Heliconia are discussed. Sixty-five species names have been applied to the heliconias that occur in Brazil. Of these 65 names, 28 are generally recognized synonyms. Of the remaining 37 species of Brazilian Heliconia, some controversy exists over the taxonomic status of at least eight. Two primary areas of distribution of species of Heliconia exist in Brazil: the Amazon basin (21 species and the Atlantic coastal forest (20 species.É apresentada uma revisão filogenética das Zingiberales e os padrões de distribuição geográfica e a diversidade das Heliconia são apresentados. Para o gênero são referidos 65 nomes de espécies dos quais provavelmente 28 sejam sinonímias. Das 37 espécies restantes, existe controvérsia pelo menos para oito delas. Duas áreas de distribuição de espécies de Heliconia são apresentadas para o Brasil: a bacia amazônica (21 espécies e a floresta costeira Atlântica (20 espécies.

  13. Distribution of phlebotomine sandflies (Diptera: Psychodidae) of medical importance in Mato Grosso State, Brazil

    OpenAIRE

    Ribeiro, Ana Lúcia Maria; Missawa,Nanci Akemi; Zeilhofer, Peter

    2007-01-01

    Intense environmental impacts, causing alterations of the natural habitats of fauna, including those of sandfly disease vectors are observed in Mato Grosso State, Central Brazil. Entomologic survey of phlebotomines was based on light trap and was carried out by entomological nucleus of the FUNASA and SES in the period between 1996 and 2001. Eighty eight species were identified, including the following sandflies with medical importance to leishmaniasis: Lutzomyia amazonensis, L. anduzei, L. an...

  14. Spatial distribution of dengue incidence and socio-environmental conditions in Campinas, São Paulo State, Brazil, 2007.

    Science.gov (United States)

    Costa, José Vilton; Donalisio, Maria Rita; Silveira, Liciana Vaz de Arruda

    2013-08-01

    This study aimed to analyze the spatial distribution of dengue risk and its association with socio-environmental conditions. This was an ecological study of the counts of autochthonous dengue cases in the municipality of Campinas, São Paulo State, Brazil, in the year 2007, aggregated according to 47 coverage areas of municipal health centers. Spatial models for mapping diseases were constructed with Bayesian hierarchical models, based on Integrated Nested Laplace Approximation (INLA). The analyses were stratified according to two age groups, 0 to 14 years and above 14 years. The results indicate that the spatial distribution of dengue risk is not associated with socio-environmental conditions in the 0 to 14 year age group. In the age group older than 14 years, the relative risk of dengue increases significantly as the level of socio-environmental deprivation increases. Mapping of socio-environmental deprivation and dengue cases proved to be a useful tool for data analysis in dengue surveillance systems.

  15. Clinical features of sarcoidosis in relation to HLA distribution and HLA-DRB3 genotyping by PCR-RFLP.

    OpenAIRE

    Ishihara, M; Ishida, T.; Mizuki, N; Inoko, H.; Ando, H; Ohno, S

    1995-01-01

    BACKGROUND--Susceptibility to the development of sarcoidosis has been demonstrated to be associated with HLA-DR5, -DR6, and -DR8 encoded by the DRB1 gene. However, involvement of the DRB3 (HLA-DR52) gene in the development of sarcoidosis remains unclear. METHODS--HLA-DRB3 genotyping was performed using the PCR-RFLP method and the clinical features of the patients with and without the DR3, 5, 6, 8 group antigens were compared. RESULTS--HLA-DRB3 genotyping indicated an association between DRB3*...

  16. A review of the ticks (Acari, Ixodida of Brazil, their hosts and geographic distribution - 1. The State of Rio Grande do Sul, Southern Brazil

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    Evans DE

    2000-01-01

    Full Text Available A review of the ticks (Acari, Ixodida of the State of Rio Grande do Sul, southern Brazil, was completed as a step towards a definitive list (currently indicated as 12 of such species, their hosts and distribution. The ticks: Argas miniatus (poultry, Ixodes loricatus (opossums, Amblyomma aureolatum (dogs, A. calcaratum (anteaters, A. cooperi (capybaras, A. nodosum (anteaters, A. tigrinum (dogs (Neotropical and Rhipicephalus sanguineus (dogs (introduced, cosmopolitan, Afrotropical were confirmed as present, in addition to the predominant, Boophilus microplus (cattle (introduced, pan-tropical, Oriental. Of the further 18 species thus far reported in the literature as present in the state, but unavailable for examination: only Ornithodoros brasiliensis (humans and their habitations (Neotropical, Ixodes affinis (deer (Nearctic/Neotropical and I. auritulus (birds (Nearctic/Neotropical/Afrotropical/ Australasian are considered likely; 13 species would benefit from corroborative local data but the majority appear unlikely; reports of A. maculatum (Nearctic/Neotropical, but circum-Caribbean are considered erroneous; the validity of A. fuscum is in doubt. The very recent, first known report of the tropical Anocentor nitens (horses(Nearctic/Neotropical, but still apparent absence of the tropical A. cajennense (catholic (Nearctic/Neotropical and the sub-tropical/temperate Ixodes pararicinus (cattle (Neotropical in Rio Grande do Sul are important for considerations on their current biogeographical distribution and its dynamics in South America. The state has relatively long established, introduced ("exotic", Old World tick species (B. microplus, R. sanguineus that continue to represent significant pests and disease vectors to their traditional, introduced domestic animal hosts, cattle and urban dogs. There are also indigenous, New World ticks (A. miniatus, O. brasiliensis, A. aureolatum, A. nitens, as both long established and possibly newly locally

  17. Estabilidade fenotípica de genótipos de algodoeiro no Estado do Mato Grosso Phenotypic stability in cotton genotypes in Mato Grosso State, Brazil

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    Eulália Soler Sobreira Hoogerheide

    2007-05-01

    Full Text Available Foram avaliados oito genótipos de algodoeiro herbáceo, sendo três linhagens e cinco cultivares, com o objetivo de estimar a adaptabilidade e estabilidade fenotípica para o caráter produtividade de algodão em caroço, pelo método Eberhart e Russell. Foram conduzidos 12 experimentos em 11 locais no Estado do Mato Grosso, sob um delineamento de blocos ao acaso com oito repetições, no ano agrícola 2000/2001. Praticamente todos os genótipos apresentaram coeficiente de determinação acima de 85%, exceto Delta Opal. As estimativas de adaptabilidade indicam que todos os genótipos apresentaram adaptação ampla (b i = 1. Quanto à estabilidade, os genótipos CNPA ITA 90, BRS Antares, CNPA 96-124, CNPA 96-283 e BRS Aroeira revelaram-se estáveis (S²d i= 0. Os melhores genótipos, caracterizados pela maior produtividade, estabilidade e adaptabilidade ampla foram CNPA ITA 90, BRS Aroeira e CNPA 96-124.Eight cotton genotypes, three lines and five cultivars, were evaluated for estimation of phenotypic adaptability and stability parameters relative to cotton yield using the method proposed by Eberhart and Russell. Twelve yield trials, in randomized complete blocks, comprising eight replications, were carried out in 11 locations of the Mato Grosso State, during the 2000/2001 crop season. All the genotypes showed determination coefficient above of 85%, except Delta Opal. For the estimates of adaptability, all the genotypes presented broad adaptation (b i = 1. The genotypes CNPA ITA 90, BRS Antares, CNPA 96-124, CNPA 96-283 and BRS Aroeira showing hight stability (S²d i= 0. The best genotypes, characterized by higher yield, stability and broad adaptability, were CNPA ITA 90, BRS Aroeira and CNPA 96-124.

  18. The relationship between genotype, psychiatric symptoms and quality of life in adult patients with sickle cell disease in São Paulo, Brazil: a cross-sectional study

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    Érika Bergamini Mastandréa

    Full Text Available CONTEXT AND OBJECTIVE: Health-related quality of life (HRQoL may be worsened in sickle cell patients due to the presence of psychiatric disorders. The aims of this study were to describe the psychiatric symptoms in Brazilian sickle cell patients and to evaluate the relationship of these symptoms to the genotype of the disease and the subject's HRQoL. DESIGN AND SETTING: Cross-sectional study conducted at the hematology outpatient clinic, Hospital São Paulo. METHODS: Adult patients with sickle cell disease completed the Medical Outcome Study - Short Form 36 and the Patients' Health Questionnaire. Clinical data were gathered from their medical files. Linear regression models were developed to study the dependency of HRQoL domains on the genotype controlling for psychiatric symptoms. RESULTS: In the study period, 110 patients were evaluated. The most frequent psychiatric symptom was depression (30%, followed by anxiety (12.7% and alcohol abuse (9.1%. Patients with the more severe genotype (SS and Sβthal0 showed lower scores for the "general health" and "role-physical" HRQoL domains, without interference from psychiatric symptoms. In the "role-physical" domain, the more severe genotype operated as a protective factor for HRQoL (β = 0.255; P = 0.007. CONCLUSION: The more severe genotypes worsened HRQoL in two domains of physical health (general health and role-physical, but they did not have any influence on mental health, thus suggesting that physicians should be more attentive to aspects of HRQoL relating to the functionality of sickle cell disease patients, so as to be aware of the limitations that these patient live with.

  19. Helicobacter pylori bab Paralog Distribution and Association with cagA, vacA, and homA/B Genotypes in American and South Korean Clinical Isolates.

    Science.gov (United States)

    Kim, Aeryun; Servetas, Stephanie L; Kang, Jieun; Kim, Jinmoon; Jang, Sungil; Cha, Ho Jin; Lee, Wan Jin; Kim, June; Romero-Gallo, Judith; Peek, Richard M; Merrell, D Scott; Cha, Jeong-Heon

    2015-01-01

    Helicobacter pylori genetic variation is a crucial component of colonization and persistence within the inhospitable niche of the gastric mucosa. As such, numerous H. pylori genes have been shown to vary in terms of presence and genomic location within this pathogen. Among the variable factors, the Bab family of outer membrane proteins (OMPs) has been shown to differ within subsets of strains. To better understand genetic variation among the bab genes and to determine whether this variation differed among isolates obtained from different geographic locations, we characterized the distribution of the Bab family members in 80 American H. pylori clinical isolates (AH) and 80 South Korean H. pylori clinical isolates (KH). Overall, we identified 23 different bab genotypes (19 in AH and 11 in KH), but only 5 occurred in greater than 5 isolates. Regardless of strain origin, a strain in which locus A and locus B were both occupied by a bab gene was the most common (85%); locus C was only occupied in those isolates that carried bab paralog at locus A and B. While the babA/babB/- genotype predominated in the KH (78.8%), no single genotype could account for greater than 40% in the AH collection. In addition to basic genotyping, we also identified associations between bab genotype and well known virulence factors cagA and vacA. Specifically, significant associations between babA at locus A and the cagA EPIYA-ABD motif (P<0.0001) and the vacA s1/i1/m1 allele (P<0.0001) were identified. Log-linear modeling further revealed a three-way association between bab carried at locus A, vacA, and number of OMPs from the HOM family (P<0.002). En masse this study provides a detailed characterization of the bab genotypes from two distinct populations. Our analysis suggests greater variability in the AH, perhaps due to adaptation to a more diverse host population. Furthermore, when considering the presence or absence of both the bab and homA/B paralogs at their given loci and the vac

  20. Predicting the geographic distribution of Lutzomyia longipalpis (Diptera: Psychodidae) and visceral leishmaniasis in the state of Mato Grosso do Sul, Brazil

    OpenAIRE

    Paulo Silva de Almeida; Alan Sciamarelli; Paulo Mira Batista; Ademar Dimas Ferreira; Joao Nascimento; Josue Raizer.; Jose Dilermando Andrade Filho; Rodrigo Gurgel-Goncalves

    2013-01-01

    To understand the geographic distribution of visceral leishmaniasis (VL) in the state of Mato Grosso do Sul (MS), Brazil, both the climatic niches of Lutzomyia longipalpis and VL cases were analysed. Distributional data were obtained from 55 of the 79 counties of MS between 2003-2012. Ecological niche models (ENM) of Lu. longipalpis and VL cases were produced using the maximum entropy algorithm based on eight climatic variables. Lu. longipalpis showed a wide distribution in MS. The highest cl...

  1. Simulation of Distributed Generation with Photovoltaic Microgrids—Case Study in Brazil

    Directory of Open Access Journals (Sweden)

    Gustavo Azevedo Xavier

    2015-05-01

    Full Text Available Elevated prices and lack of proper legislation and government incentives have been the main barriers in the development of the photovoltaic market in Brazil. In an attempt to overcome those barriers, a microgrid model was proposed and simulated. In the proposed microgrids, residential consumers are connected to each other to maximize the investment return by trading the surplus of generated energy among them. Different topologies and scenarios were studied from electrical energy and economic standpoints. Stochastic data of solar radiation were simulated for the city of Viçosa, Minas Gerais, Brazil, for the period of one year, considering the statistical behavior of a series over 20 years. The system output power and energy balance were calculated considering a model for photovoltaic generators and the radiation simulated data. By determining the generated energy and electrical needs of the microgrid members, the cash flow and economic feasibility were calculated. Sensitivity analyses were performed by varying economic parameters to determine situations where investment becomes feasible. This paper shows that microgrid contributes to improve the economics and the initial investments. The number of participants in a microgrid, the electricity and the equipment costs are important parameters to speed up the economic and technical feasibility process.

  2. Amphibia, Anura, Centrolenidae, Hyalinobatrachium crurifasciatum Myers and Donnelly, 1997: First record from Brazil and geographic distribution map

    OpenAIRE

    RODRIGUES,Domingos de Jesus; Lima, Marcelo de Morais; Morais, Drausio H. [UNESP; Kawashita-Ribeiro, Ricardo A.

    2010-01-01

    The current note reports the presence of Hyalinobatrachium crurifasciatum at municipality of Cotriguaçu, state of Mato Grosso, Central Brazil. This is the first occurrence of this species in Brazil. © 2010 Check List and Authors.

  3. Seed dispersal and spatial distribution of Attalea geraensis (Arecaceae) in two remnants of Cerrado in Southeastern Brazil

    Science.gov (United States)

    Bonjorne de Almeida, Lilian; Galetti, Mauro

    2007-09-01

    The seed dispersal system of Attalea geraensis (Arecaceae), an acaulescent palm, was investigated during one year in two Cerrado fragments in the state of São Paulo, southeastern Brazil. A. geraensis had inflorescences and infrutescences throughout the year. Two scatter-hoarding rodents (the spiny rat, Clyomys bishopi and agoutis, Dasyprocta azarae) were identified as seed predators/dispersers, able to move seeds up to 30 m from the palms, although most of the fruits (57.5%) were dispersed less than 2 m. The removal rates were high and after 20 days, 97.2% of the fruits were removed. Fruit fate was not related to fruit mass, length and diameter. The application of Morisita's index showed a more clumped distribution of adults in the smaller fragment, probably because of the absence of agoutis. Higher seed removal by rodents in the large Cerrado remnant may decrease seed predation by beetles.

  4. Monitoring and spatial distribution of heterotrophic bacteria and fecal coliforms in the Rodrigo de Freitas Lagoon, Rio de Janeiro, Brazil

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    Lutterbach Márcia T. S.

    2001-01-01

    Full Text Available The distribution of heterothrophic bacteria and fecal coliforms was monitored at four sampling stations located near the shore of the Rodrigo de Freitas Lagoon, in the city of Rio de Janeiro, Brazil. Water samples were collected, monthly from October 1994 through September 1998. The highest heterothrophic count (6.5x10 7 CFU/100mL was recorded at stations 2 and 4 during August 1998 and the lowest (10 ³ CFU/100 mL at station 3 during February 1995. With respect to fecal coliforms, the highest and lowest counts were 1.6x10 5 coliforms/100mL at station 3 during March 1997 and <1 coliform/100mL at all the stations during February 1995 and September 1997 as well as station 3 during February 1998. The data indicated a percentage increase of the microorganisms surveyed over time at all the sampling stations studied.

  5. Adaptabilidade e estabilidade de genótipos de girassol para a região subtropical do Brasil Adaptability and stability of sunflower genotypes for the sub-tropical region of Brazil

    Directory of Open Access Journals (Sweden)

    Willyam Stern Porto

    2009-12-01

    áveis.The success of sunflower crop in Brazil is associated to the choice of adapted cultivars to different environments. When there are different genotypes answers in different environments, the release of new cultivars can be facilitated by carrying out studies of adaptability and stability of these genotypes to reduce the effects of genotypes x environments interaction. In Brazil, this information become more important, therefore the main cultivars had been developed in others countries, with different soil traits and climate. The objective of this study was to select sunflower genotypes for the sub-tropical region of Brazil. Experimental data from 1999/2000 to 2003/2004 were obtained by the National Sunflower Trials, coordinated by Embrapa Soja. The evaluated traits were grain and oil yields (kg ha-1. It was carried out a study of adaptability and stability of genotypes according to the methods proposed by PORTO et al. (2007, EBERHART & RUSSELL (1966 and ROCHA et al. (2005. Differently from the method of EBERHART & RUSSELL (1966, PORTO et al. (2007 selected genotypes, that despite of its lower overall average in relation to reference standard had good performance in specific environments. This method was more rigorous to select genotypes, when compared with ROCHA et al. (2005. For grain yield, genotype ACA 884 was indicated for general environments, EM 677008, Agrobel 930 and GV 26048 were indicated for favorable environments and ACA 885 for the unfavorable environments. In the same way, for oil yield, ACA 884 had general indication, GV 26048, CF 17, Agrobel 972 and Helio 358 are indicated for favorable environments and HT 01 and ACA 885 for the unfavorable ones.

  6. Uneven seasonal distribution of Babesia canis and its two 18S rDNA genotypes in questing Dermacentor reticulatus ticks in urban habitats.

    Science.gov (United States)

    Hornok, Sándor; Kartali, Kitti; Takács, Nóra; Hofmann-Lehmann, Regina

    2016-07-01

    It has been reported from cities in Central Europe that clinical cases of canine babesiosis are most frequent in spring time, despite the fact that the peak activity of Dermacentor reticulatus (the vector of Babesia canis) is during autumn. The present study was initiated to evaluate the seasonal distribution of B. canis-infected D. reticulatus ticks in this context. In two habitats of Budapest 852 D. reticulatus adults were collected between August, 2014 and June, 2015. Among the molecularly analysed 413 ticks 8.2% were PCR positive for piroplasms. Both formerly reported 18S rDNA genotypes of B. canis: ("A" and "B") were identified. In habitat-1 B. canis-infected ticks were detected only in spring. Similarly, in habitat-2 B. canis-infected ticks occurred significantly more frequently during winter and spring than in the autumn (24.6% vs. 1.4%), and their monthly distribution showed significant negative correlation with tick size. The prevalence of infected ticks was the highest (43.5%) in late February. In addition, a month-dependent time-shift was noted in the appearance of the two B. canis 18S rDNA genotypes: the less pathogenic "A" predominating earlier, and the more pathogenic "B" later. It is known from literature that D. reticulatus individuals that moult to adult in the spring are smaller in size. Thus, the above results suggest that in urban habitats the occurrence of B. canis-infected ticks (or their questing activity) is more likely, when there are freshly emerged adults in the population, i.e. early in the questing season. It was also observed that the temporal distribution of D. reticulatus ticks carrying different B. canis genotypes was not random.

  7. Susceptibility of biallelic haplotype and genotype frequencies to genotyping error.

    Science.gov (United States)

    Moskvina, Valentina; Schmidt, Karl Michael

    2006-12-01

    With the availability of fast genotyping methods and genomic databases, the search for statistical association of single nucleotide polymorphisms with a complex trait has become an important methodology in medical genetics. However, even fairly rare errors occurring during the genotyping process can lead to spurious association results and decrease in statistical power. We develop a systematic approach to study how genotyping errors change the genotype distribution in a sample. The general M-marker case is reduced to that of a single-marker locus by recognizing the underlying tensor-product structure of the error matrix. Both method and general conclusions apply to the general error model; we give detailed results for allele-based errors of size depending both on the marker locus and the allele present. Multiple errors are treated in terms of the associated diffusion process on the space of genotype distributions. We find that certain genotype and haplotype distributions remain unchanged under genotyping errors, and that genotyping errors generally render the distribution more similar to the stable one. In case-control association studies, this will lead to loss of statistical power for nondifferential genotyping errors and increase in type I error for differential genotyping errors. Moreover, we show that allele-based genotyping errors do not disturb Hardy-Weinberg equilibrium in the genotype distribution. In this setting we also identify maximally affected distributions. As they correspond to situations with rare alleles and marker loci in high linkage disequilibrium, careful checking for genotyping errors is advisable when significant association based on such alleles/haplotypes is observed in association studies.

  8. [The growth and distribution of the population of Brazil: recent trends].

    Science.gov (United States)

    Martine, G; Camargo, L

    1984-01-01

    Population trends underwent profound changes in Brazil during the last few decades. An important decrease in the rate of population growth was registered in the 1970s. This decrease is attributable to a decline in the level of fertility, which was observed in all regions and in both urban and rural areas. In order to explain this decline, it is necessary to analyze both structural and circumstantial factors related to the political, economic, and social context of the times. Main trends in population redistribution during the 1970s can be regrouped in terms of interregional exchanges and rural-urban migration. A growing convergence between these 2 types of patterns is observed in that population is increasingly being concentrated in densely populated areas of intense economic activities. The implications of these trends for public action are analyzed in the final section.

  9. Distribution of phlebotomine sandflies (Diptera: Psychodidae) of medical importance in Mato Grosso State, Brazil.

    Science.gov (United States)

    Ribeiro, Ana Lúcia Maria; Missawa, Nanci Akemi; Zeilhofer, Peter

    2007-01-01

    Intense environmental impacts, causing alterations of the natural habitats of fauna, including those of sandfly disease vectors are observed in Mato Grosso State, Central Brazil. Entomologic survey of phlebotomines was based on light trap and was carried out by entomological nucleus of the FUNASA and SES in the period between 1996 and 2001. Eighty eight species were identified, including the following sandflies with medical importance to leishmaniasis: Lutzomyia amazonensis, L. anduzei, L. antunesi, L. ayrozai, L. carrerai carrerai, L. complexa, L. cruzi, L. flaviscutellata, L. intermedia, L. longipalpis, L. migonei, L. paraensis, L. ubiquitalis, L. whitmani and L. yuilli yuilli. Most sandflies of medical importance occurred in the Amazon forest and savannah. L. longipalpis and L. cruzi had high densities in the savannah region. L. flaviscutellata is predominating in both the Amazon forest and the savannah region. L. whitmani and L. antunesi were sampled in the Amazon forest, savannah and marsh land.

  10. Analysis of the XLPE Insulation of Distribution Covered Conductors in Brazil

    Science.gov (United States)

    Nóbrega, A. M.; Martinez, M. L. B.; de Queiroz, Alvaro Antonio Alencar

    2014-03-01

    Cross-linked polyethylene (XLPE) has been the most common insulation applied to medium voltage covered conductors (MVCCs) in Brazil. The results of accelerated aging tests carried out at high voltage laboratory of UNIFEI (LAT-EFEI), combining the stresses of heat and voltage to ground aiming at enhancing surface corona activity assays, have identified the early failures in XLPE insulations of the Brazilian MVCCs. The observed failures indicate that complementary studies should be performed to better understand the degradation mechanisms of the MVCCs insulations manufactured in Brazil. In this paper, x-ray photoelectron spectroscopy (XPS), contact angle analysis (CA), photoacoustic spectroscopy (PAS), x-ray diffraction (XRD), and atomic force microscopy (AFM) measurements on samples of five Brazilian national/regional MVCCs are reported. XPS, CA, and PAS analysis indicated that a large variety of oxygen-containing groups associated to the oxidation of the XLPE insulations appear to be related to the manufacturing conditions. AFM analysis indicated that the average surface roughness and topography of the XLPE insulation changed significantly and depend on the selected manufacturer. XRD analysis indicates a strong heterogeneity of crystals nucleation that results into different degrees of crystallinity of the Brazilian MVCCs cables. The results of this work indicate strong evidences of manufacturing defects in the XLPE insulation of Brazilian's MVCCs. The origin of these defects seems to be inherent to the technology used by manufacturers to the production of the MVCCs. The production-related defects are not detectable by the standard tests as partial discharges or even the standard routine—acceptance power frequency assays routinely used in dielectric compatibility tests at high voltage laboratories.

  11. Stability and adaptability of runner peanut genotypes based on nonlinear regression and AMMI analysis

    Directory of Open Access Journals (Sweden)

    Roseane Cavalcanti dos Santos

    2012-08-01

    Full Text Available The objective of this work was to estimate the stability and adaptability of pod and seed yield in runner peanut genotypes based on the nonlinear regression and AMMI analysis. Yield data from 11 trials, distributed in six environments and three harvests, carried out in the Northeast region of Brazil during the rainy season were used. Significant effects of genotypes (G, environments (E, and GE interactions were detected in the analysis, indicating different behaviors among genotypes in favorable and unfavorable environmental conditions. The genotypes BRS Pérola Branca and LViPE‑06 are more stable and adapted to the semiarid environment, whereas LGoPE‑06 is a promising material for pod production, despite being highly dependent on favorable environments.

  12. Vertical and time distribution of Diplopoda (Arthropoda: Myriapoda in a monodominant forest in Pantanal of Mato Grosso, Brazil

    Directory of Open Access Journals (Sweden)

    Leandro D. Battirola

    2009-09-01

    Full Text Available In this study different sampling techniques for Diplopoda in soil, tree trunks and canopies were applied in an integrated way in the northern region of the Pantanal of Mato Grosso, Brazil. This was done in order to assess the relationship within the fauna in each forest strata, as well as its richness and temporal distribution. In all these habitats there were a total of 1,354 diplopods, distributed in four taxonomic orders, with Polyxenida being predominant over Polydesmida, Spirostreptida and Spirobolida. The largest representation was found on the trunks of the Vochysia divergens (721 ind., intercepted by tree photoecletors, whereas in the canopies sampling reached only 65 specimens. In the edaphic stratum 568 diplopods were captured, most with the use of the Winkler extractor, followed by pitfall traps and soil photoecletors. In spite of being an important group in these environments, both in terms of richness and diversity, this was less than has been observed in other Neotropical areas. However, due to seasonal changes in the Pantanal the existence of a relationship between the soil and the tree fauna was found as well as different survival strategies observed during the flood period. Regarding vertical distribution, the greatest richness and variety of taxonomic groups was found in the forest's edaphic environment demonstrating its association mainly with this forest stratum.

  13. Natural gas distribution in Brazil - opportunities of improvement; Distribuicao de gas natural no pais - oportunidades de melhoria

    Energy Technology Data Exchange (ETDEWEB)

    Correa, Silvia R. [PETROBRAS, Rio de Janeiro, RJ (Brazil); Quintella, Odair M.; Farias Filho, Jose R. de [Universidade Federal Fluminense, Niteroi, RJ (Brazil)

    2005-07-01

    Great are the challenges established by the Brazilian Government related to goals to be achieved for the increment of the Natural Gas participation in brazilian energetic matrix, from current 5% to 12%, up to 2010. The enlargement of the distribution infrastructure of the gas (gas-pipelines 'mesh') in Brazil is considered one of the greatest challenges for the growth of the Brazilian market of Natural Gas, accomplishment that involves elevated investments. This paper presents a model of Management System for the good organizational performance of the small Natural Gas Supplying Brazilian Companies focused on criteria of Leadership, Strategies and Plans and Results, established by the Premio TOP Empresarial and by the 'Rumo a Excelencia', held by the 'Progama Qualidade Rio' and 'Fundacao para o Premio Nacional da Qualidade', respectively. The management practices of these companies were reviewed, considering the context of the energetic Brazilian scenario, subjected to the political and operational definitions and uncertainties, the available financial resources, limited or not prioritized, and actual barriers to be surpassed by the Gas Supplying Companies in order to achieve the pre-established government goals for this segment. The implementation of the proposed simplified Model, seen as improvement opportunities for the segment of Natural Gas distribution, will lead the Gas Distribution Companies to a intermediary stage envisioning the real steps towards the excellence of the performance. (author)

  14. Distribution of genotypes and subtypes of hepatitis B virus in the population of southern of Anhui Province%皖南地区乙型肝炎病毒基因型和亚型的分布特征

    Institute of Scientific and Technical Information of China (English)

    宋骏; 夏长胜

    2011-01-01

    目的:研究皖南地区人群乙型肝炎病毒(hepatitis B virus,HBV) 基因型和亚型流行及分布情况.方法:采用HBV基因型和亚型特异性引物PCR法,对皖南地区319例HBV DNA阳性患者进行基因型和亚型的检测.结果:皖南地区319例HBV感染者中,可检出基因型285例,检出率为89%,其中B型162例(57%),全部为Ba亚型;C型49例(17%),其中C1亚型38例,C2亚型9例,未分型2例;B+C 混合型74例(26%).B型感染者与C型感染者血清HBV DNA 水平差异无统计学意义(P>0.05),但均高于B 和C 基因型混合感染患者(P<0.01).结论:皖南地区人群HBV感染的基因型主要为B 型、B+C混合型及C 型;亚型则以Ba和C1亚型为主.%Objective:To investigate the distribution of genotypes and subtypes of hepatitis B virus (HBV) in the population living in southern area of Anhui Province. Methods: The genotypes were detected in 319 subjects infected with HBV by genotype/subtype-specific primer PCR.Results: HBV genotypes and subtypes were identified in 285 of the 319 serum samples(89% ), and genotype B, which totally fell into sub-genotype Ba, was seen in 162(57 % ) and genotype C in 49( 17% ) which included 38 genotypes of C1, 9 of C2 and failure of genotyping in 2.Mixed genotypes( B + C ) accounted for 26 % (74/285). There was no significant difference between patients infected with genotype B and those with genotype C in terms of serum HBV DNA loads(P>0.05), and yet the loads were greater than that of mixed genotypes of B and C.Conclusion: Genotype B, mixed genotypes ( B + C) and genotype C are prevalent in the population living in southern of Anhui province, and subtypes of Ba and C1 are predominant.

  15. A new method to predict the epidemiology of fungal keratitis by monitoring the sales distribution of antifungal eye drops in Brazil.

    Directory of Open Access Journals (Sweden)

    Marlon Moraes Ibrahim

    Full Text Available PURPOSE: Fungi are a major cause of keratitis, although few medications are licensed for their treatment. The aim of this study is to observe the variation in commercialisation of antifungal eye drops, and to predict the seasonal distribution of fungal keratitis in Brazil. METHODS: Data from a retrospective study of antifungal eye drops sales from the only pharmaceutical ophthalmologic laboratory, authorized to dispense them in Brazil (Opthalmos were gathered. These data were correlated with geographic and seasonal distribution of fungal keratitis in Brazil between July 2002 and June 2008. RESULTS: A total of 26,087 antifungal eye drop units were sold, with a mean of 2.3 per patient. There was significant variation in antifungal sales during the year (p<0.01. A linear regression model displayed a significant association between reduced relative humidity and antifungal drug sales (R2 = 0.17,p<0.01. CONCLUSIONS: Antifungal eye drops sales suggest that there is a seasonal distribution of fungal keratitis. A possible interpretation is that the third quarter of the year (a period when the climate is drier, when agricultural activity is more intense in Brazil, suggests a correlation with a higher incidence of fungal keratitis. A similar model could be applied to other diseases, that are managed with unique, or few, and monitorable medications to predict epidemiological aspects.

  16. Key locations for soybean genotype assessment in Central Brazil Locais-chave para avaliação de genótipos de soja na Região Central do Brasil

    Directory of Open Access Journals (Sweden)

    Roberto Miranda Pacheco

    2009-05-01

    Full Text Available The objective of this work was to identify key locations for the establishment of soybean (Glycine max genetic breeding programs, in the Central Region of Brazil. Grain yield data of three maturity groups of soybean genotypes, from regional trials conducted over three years, at 18 locations in Brazilian Cerrado were used. A key location for the early phases of the breeding program was defined as the site that best classifies the winning genotypes in the region. Key locations for the final phases were defined as those sites that best represent each environmental stratum, in relation to the adaptability of the respective winning genotype. This adaptability was estimated by additive main effects and multiplicative interaction (AMMI model analysis, using the distance between the score of each location in a stratum and the score of the winning genotype, which characterizes such stratum in an AMMI biplot. The locations that best classified the winning genotypes over space and time were Mineiros, Placas and Rio Verde. For the final phases of genotype selection, with data from the three maturity group, the recommended locations were: Buritis, Chapadão do Céu, Iraí, Pamplona, Placas, Planaltina, Rio Verde, Sacramento, Senador Canedo, Uberaba, and Uberlândia.O objetivo deste trabalho foi identificar locais-chave para o estabelecimento de programas de melhoramento genético de soja (Glycine max, na Região Central do Brasil. Foram utilizados dados de produtividade de grãos de genótipos de soja, de três ciclos de maturação, obtidos de ensaios regionais conduzidos por três anos em 18 localidades da região. O local-chave para a condução das fases preliminares do programa foi definido como a localidade que melhor classifica os genótipos vencedores na região. Os locais-chave para as fases finais foram definidos como os que melhor representam cada estrato ambiental identificado, em termos da adaptabilidade do respectivo genótipo vencedor. Essa

  17. Taxonomic key for the genera of Elmidae (Coleoptera, Byrrhoidea occurring in Goiás State, Brazil, including new records and distributional notes

    Directory of Open Access Journals (Sweden)

    Felipe F. Barbosa

    2013-06-01

    Full Text Available A taxonomic key for the genera of Elmidae (Coleoptera, Byrrhoidea occurring in Goiás State, Brazil, including new records and distributional notes. Despite their great diversity and high abundance in Neotropical aquatic environments, the fauna of Elmidae remains practically unknown in some areas and even entire biomes in this region. In this work we bring, for the first time, faunistic data for the Elmidae of central Brazil. The aim of this work was to inventory the Elmidae fauna in central, southwestern and southeastern Goiás State, Brazil and to produce a taxonomic key, at genus level, for adults from the studied region. The taxonomic key presented herein offers means for the identification of all the 13 genera known to occur in Goiás, 11 of them being new records for the State. Moreover, the number of named species registered for Goiás increased from one to nine.

  18. CagA phosphorylation EPIYA-C motifs and the vacA i genotype in Helicobacter pylori strains of asymptomatic children from a high-risk gastric cancer area in northeastern Brazil

    Science.gov (United States)

    Braga, Lucia Libanez Bessa Campelo; de Oliveira, Maria Aparecida Alves; Gonçalves, Maria Helane Rocha Batista; Chaves, Fernando Kennedy; Benigno, Tiago Gomes da Silva; Gomes, Adriana Dias; Silva, Cícero Igor Simões Moura; Anacleto, Charles; Batista, Sérgio de Assis; Queiroz, Dulciene Maria Magalhães

    2014-01-01

    Helicobacter pylori infection is one of the most common infections worldwide and is associated with gastric diseases. Virulence factors such as VacA and CagA have been shown to increase the risk of these diseases. Studies have suggested a causal role of CagA EPIYA-C in gastric carcinogenesis and this factor has been shown to be geographically diverse. We investigated the number of CagA EPIYA motifs and the vacA i genotypes in H. pylori strains from asymptomatic children. We included samples from 40 infected children (18 females and 22 males), extracted DNA directly from the gastric mucus/juice (obtained using the string procedure) and analysed the DNA using polymerase chain reaction and DNA sequencing. The vacA i1 genotype was present in 30 (75%) samples, the i2 allele was present in nine (22.5%) samples and both alleles were present in one (2.5%) sample. The cagA-positive samples showed distinct patterns in the 3’ variable region of cagA and 18 of the 30 (60%) strains contained 1 EPIYA-C motif, whereas 12 (40%) strains contained two EPIYA-C motifs. We confirmed that the studied population was colonised early by the most virulent H. pylori strains, as demonstrated by the high frequency of the vacA i1 allele and the high number of EPIYA-C motifs. Therefore, asymptomatic children from an urban community in Fortaleza in northeastern Brazil are frequently colonised with the most virulent H. pylori strains. PMID:25494468

  19. Chaetognatha of the Brazil-Malvinas (Falkland confluence: distribution and associations

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    Alina M. Crelier

    Full Text Available The planktonic chaetognaths from the Brazil-Malvinas (Falkland confluence, extending between 36º 30' - 50º 5' S and 60º 33' - 41º 7' W, were studied. Ten species were found: Eukrohnia hamata (Möbius, 1875 (Eukrohniidae, Pterosagitta draco (Krohn, 1853 (Pterosagittidae, Sagitta enflata Grassi, 1881, Sagitta gazellae Ritter-Zahony, 1909, Sagitta hexaptera d´Orbigny, 1834, Sagitta lyra Krohn, 1853, Sagitta minima Grassi, 1881, Sagitta planctonis Steinhaus, 1896, Sagitta serratodentata Krohn, 1853, and Sagitta tasmanica Thomson, 1947 (Sagittidae. Sagitta gazellae was the most abundant species followed by E. hamata, S. tasmanica and S. serratodentata. The association analysis among the different species, salinity and temperature revealed two groups of species, one related to higher salinities and warmer waters (P. draco, S. hexaptera and S. serratodentata and the other to lower salinities and colder waters (E. hamata, S. gazellae and S. tasmanica. The fact that P. draco and S. hexaptera, formerly defined as warm-water species, appeared further south than previously reported might be related to the existence of warm core eddies up to 46º S in September and October 1988.

  20. Spatial distribution of schistosomiasis foci on Itamaracá Island, Pernambuco, Brazil

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    CS Barbosa

    2004-08-01

    Full Text Available Acute cases of schistosomiasis have been found on the coastal area of Pernambuco, Brazil, due to environmental disturbances and disorderly occupation of the urban areas. This study identifies and spatially marks the main foci of the snail host species, Biomphalaria glabrata on Itamaracá Island. The chaotic occupation of the beach resorts has favoured the emergence of transmission foci, thus exposing residents and tourists to the risk of infection. A database covering five years of epidemiological investigation on snails infected by Schistosoma mansoni in the island was produced with information from the geographic positioning of the foci, number of snails collected, number of snails tested positive, and their infection rate. The spatial position of the foci were recorded through the Global Positioning System (GPS, and the geographical coordinates were imported by AutoCad. The software packages ArcView and Spring were used for data processing and spatial analysis. AutoCad 2000 was used to plot the pairs of coordinates obtained from GPS. Between 1998 and 2002 5009 snails, of which 12.2% were positive for S. mansoni, were collected in Forte Beach. A total of 27 foci and areas of environmental risk were identified and spatially analyzed allowing the identification of the areas exposed to varying degrees of risk.

  1. IMPLEMENTATION OF DISTRIBUTION CENTERS AS LOGISTICS COMPETITIVE ADVANTAGE: STUDY ON OIL COMPANY DISTRIBUTOR IN SOUTHEAST BRAZIL

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    Henrique Albernaz

    2014-12-01

    Full Text Available This study aims to present how distribution centers implementation in organization is able to provide a competitive advantage over its competitors. The qualitative research was based on multiple case studies. Thus, these cases were focused on lubricants segment national distribution company. It was intended to introduce improvements recognizing distribution centers (DCs importance as competitive advantage. DC Macaé-RJ and Piracicaba-SP were chosen to represent this scenario. Therefore, as results it was found increased sales and operating leverage of results within the market in which it operates.

  2. Distribution and conservation of three important bird groups of the Atlantic Forest in north-east Brazil

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    G. A. Pereira

    Full Text Available Abstract The Pernambuco Endemism Center in north-east Brazil has the most fragmented forest cover and the largest number of threatened birds of the whole Atlantic Forest. We analyzed the distribution of three groups of bird species: forest-dependent, endemic and/or threatened using the interpolation method of Inverse Distance Weighting. We also checked the concentration of these birds in protected and unprotected areas, suggesting new sites that need to be protected. The richness concentration of forest-dependent, endemic and/or threatened birds in 123 sites were analysed. There was a greater concentration of the three groups in north Alagoas, south and north Pernambuco, and north and west Paraíba. The distribution of the three groups was almost regular in different vegetation types, although a lower concentration was found in the pioneer formation. There was a greater concentration of birds from all three groups between Pernambuco and Alagoas, and this must be due to the presence of more forest fragments with better structure and vegetation heterogeneity. The protected and unprotected areas hosted important records of endemic and/or threatened birds. We suggested some important places for implementation of new protected areas due to the larger concentrations of the target birds and because they are located within the boundaries of the Important Bird Areas.

  3. Distribution and conservation of three important bird groups of the Atlantic Forest in north-east Brazil.

    Science.gov (United States)

    Pereira, G A; Araújo, H F P; Azevedo-Júnior, S M

    2016-01-01

    The Pernambuco Endemism Center in north-east Brazil has the most fragmented forest cover and the largest number of threatened birds of the whole Atlantic Forest. We analyzed the distribution of three groups of bird species: forest-dependent, endemic and/or threatened using the interpolation method of Inverse Distance Weighting. We also checked the concentration of these birds in protected and unprotected areas, suggesting new sites that need to be protected. The richness concentration of forest-dependent, endemic and/or threatened birds in 123 sites were analysed. There was a greater concentration of the three groups in north Alagoas, south and north Pernambuco, and north and west Paraíba. The distribution of the three groups was almost regular in different vegetation types, although a lower concentration was found in the pioneer formation. There was a greater concentration of birds from all three groups between Pernambuco and Alagoas, and this must be due to the presence of more forest fragments with better structure and vegetation heterogeneity. The protected and unprotected areas hosted important records of endemic and/or threatened birds. We suggested some important places for implementation of new protected areas due to the larger concentrations of the target birds and because they are located within the boundaries of the Important Bird Areas.

  4. Diversity and distribution of the bryophyte flora in montane forests in the Chapada Diamantina region of Brazil

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    Emilia de Brito Valente

    2013-09-01

    Full Text Available Bryophytes constitute an important component of tropical rain forests, which provide microhabitats favorable for their establishment. Bryophytes are also quite responsive to changes in microclimate, which makes them good bioindicators. This study aimed to determine the diversity and distribution of bryophytes in upper and lower montane forests of the Chapada Diamantina region of the state of Bahia, Brazil. To that end, we studied community aspects such as richness, diversity, substrates colonized, life forms and floristic similarity between areas and regions. In 2007 and 2008, we collected specimens from six forest sites, located from the north to the south of the Chapada Diamantina region. We identified a total of 205 infrageneric taxa. In comparison with the lower montane forests, the upper montane forests presented higher diversity and species richness, as well as greater numbers of substrates colonized, life form types, species of restricted geographic distribution and species typical of shaded areas. We also found low similarity in the species composition, the populations of the upper and lower montane forests forming two large and distinct groups. Although presenting relatively high floristic homogeneity among themselves, the Chapada Diamantina areas presented little similarity with those of the Atlantic Forest. This can be explained by the differences between the two regions in terms of environmental conditions, precipitation, seasonality, elevation and continentality.

  5. Longitudinal use of feeding resources and distribution of fish trophic guilds in a coastal Atlantic stream, southern Brazil

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    Luciano Lazzarini Wolff

    Full Text Available This study described the use of food resources and the distribution of fish trophic guilds along the longitudinal gradient of a coastal Atlantic stream, southern Brazil. Allochthonous resources (terrestrial insects predominated in the headwaters, whereas autochthonous food items (algae, fish and detritus predominated in the mouth section. Detritivorous, aquaticinvertivorous, and terrestrial- and aquatic-insectivorous species occurred throughout the gradient, while omnivorous and piscivorous in the headwaters and middle stretches, respectively, and herbivorous in the middle and mouth. Detritivores and aquatic-insectivores were significantly more specialized than the other guilds, however, there was no evidence of a longitudinal increase in trophic specialization. Density and biomass of aquatic-invertivores and aquatic-insectivores decreased, whereas that of detritivores increased longitudinally. The distribution of trophic guilds was significantly associated with the stream section, where aquatic and terrestrial insectivorous were more frequent in rocky and flowed stretches from the headwater and detritivores in deeper environments with finer particles of substrate from the mouth. This suggests that fish assemblages in coastal streams with a steep longitudinal gradient may follow patterns in the use of food resources according with the food availability along the river, as predicted by the River Continuum Concept.

  6. Updating the geographical distribution and frequency of Aedes albopictus in Brazil with remarks regarding its range in the Americas

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    Roberta Gomes Carvalho/

    2014-09-01

    Full Text Available The geographical distribution of Aedes albopictus in Brazil was updated according to the data recorded across the country over the last eight years. Countrywide house indexes (HI for Ae. albopictus in urban and suburban areas were described for the first time using a sample of Brazilian municipalities. This mosquito is currently present in at least 59% of the Brazilian municipalities and in 24 of the 27 federal units (i.e., 26 states and the Federal District. In 34 Brazilian municipalities, the HI values for Ae. albopictus were higher than those recorded for Ae. aegypti, reaching figures as high as HI = 7.72 in the Southeast Region. Remarks regarding the current range of this mosquito species in the Americas are also presented. Nineteen American countries are currently infested and few mainland American countries have not confirmed the occurrence of Ae. albopictus. The large distribution and high frequency of Ae. albopictus in the Americas may become a critical factor in the spread of arboviruses like chikungunya in the new world.

  7. Spatial distribution of the estuarine ichthyofauna of the Rio Formoso (Pernambuco, Brazil, with emphasis on reef fish

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    Andréa C. G. de Paiva

    2009-06-01

    Full Text Available The objectives of the present study were to identify species of reef fish that use the Rio Formoso estuary (northeastern Brazil as a refuge and natural nursery and to describe the spatial distribution of the estuary fish fauna in rainy and dry seasons. A total of 5475 specimens, across 78 species and 39 families, were analyzed; 51.3% of the species were of reef origin. Among these, Eucinostomus melanopterus (Bleeker, 1863, E. gula (Cuvier, 1830, and Sphoeroides testudineus (Linnaeus, 1758, in this order, were the most abundant in the upper estuary; S. greeleyi Gilbert, 1900, E. melanopterus, and Lutjanus synagris (Linnaeus, 1758 were the most abundant in the mid estuary; and E. gula and Albula vulpes (Linnaeus, 1758 in the lower estuary. The percentages of reef species were 39.2%, 54.2% and 66.7% for the upper, mid and lower regions, respectively. The greatest diversity was found in the upper estuary and greatest abundance occurred in the mid region. The type of sediment was a strong determinant of the spatial distribution of fish fauna. The most abundant species were found in a mesohaline (5-18 to euhaline (30-40 salinity regimen, suggesting some capacity for osmotic regulation. The fish fauna of the Rio Formoso estuary receives a direct influence from the reefs and coastal region between Sirinhaém and Tamandaré, thereby providing a greater richness of reef fish.

  8. Abundance and spatial-temporal distribution of the shrimp Xiphopenaeus kroyeri (Decapoda: Penaeidae): an exploited species in southeast Brazil.

    Science.gov (United States)

    Silva, E R; Sancinetti, G S; Fransozo, A; Azevedo, A; Costa, R C

    2016-04-19

    This study evaluated the abundance and spatial-temporal distribution of the shrimp Xiphopenaeus kroyeri in the coastal region of Macaé, state of Rio de Janeiro, southeastern Brazil. Monthly samples were obtained from March 2008 to February 2010 in six stations located in Inner (5, 10 and 15m depth) and Outer (25, 35 and 45m depth) areas. It was used a commercial fishery boat equipped with an otter-trawl net (3.5 m mouth width, mesh size 20mm and 15mm in the cod end). Water samples were taken for determination of temperature and salinity, and sediment samples for determination of texture and organic matter content. A total of 7146 shrimps were sampled. About 95% of all shrimps were caught in the shallow area, i.e., depths <20m. Greatest abundances were recorded in winter and spring. No significant correlation was observed between sediment (phi) and abundance. The distribution of X. kroyeri in the studied area was closely related to seasonal cold waterfront of the South Atlantic Central Water (SACW) and temperature was the main factor affecting the species abundance.

  9. [Distribution of emm genotypes and antibiotic susceptibility of Streptococcus pyogenes strains: analogy with the vaccine in development].

    Science.gov (United States)

    Arslan, Uğur; Oryaşın, Erman; Eskin, Zeynep; Türk Dağı, Hatice; Fındık, Duygu; Tuncer, Inci; Bozdoğan, Bülent

    2013-04-01

    Streptococcus pyogenes is the most common bacterial pathogen causing pharyngotonsillitis, and also can lead to diseases such as otitis media, impetigo, necrotizing fasciitis, bacteremia, sepsis and toxic shock-like syndrome. M protein encoded by emm gene is an important virulence factor of S.pyogenes and it is used for genotyping in epidemiological studies. The aims of this study were to determine the M protein types of group A streptococci (GAS) by using emm gene sequence analysis method, to compare the M types in terms of analogy with the vaccine in development and to determine the antibiotic susceptibilities of the isolates. A total of 35 GAS strains isolated from various clinical specimens in our laboratory were included in the study. Strains growing in blood culture were considered as invasive, strains growing in throat and abscess cultures were considered as non-invasive. The isolates have been identified by conventional methods and 16S rRNA sequence analysis at species level. emm genotyping of strains identified as S.pyogenes, was performed by PCR method as proposed by the CDC. Amplicons were obtained and sequenced in 23 out of 35 isolates. The results were compared with CDC emm sequence database. Antibiotic susceptibility of the isolates was performed by agar dilution method and evaluated as recommended by CLSI. Twenty-three out of 35 isolates could be typed and 15 different emm genotypes were detected. The most common emm types were emm1 (22%), emm89 (13%), emm18 (9%) and emm19 (9%). The detection rate of other emm types (emm5, 12, 14, 17, 26, 29, 37, 74, 78, 92, 99) was 47%. Types emm1, 12, 19, 74, 89 and 99 were observed in strains isolated from blood cultures. It was detected that nine of the 15 (60%) emm types are within the contents of 26 valent vaccine (emm 1, 5, 12, 14, 18, 19, 29, 89, 92). It was also observed that 17 (74%) of the 23 cases were infected by vaccine types and the four emm types (emm1, 12, 19, 89) identified in blood samples were

  10. Phenotypic and genotypic profile of pyrethroid resistance in populations of the mosquito Aedes aegypti from Goiânia, Central West Brazil

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    Francesca Guaracyaba Garcia Chapadense

    2015-10-01

    Full Text Available ABSTRACTINTRODUCTION:The mosquito Aedes aegypti has evolved resistance to pyrethroid insecticides. The present study evaluated Ae. aegypti from Goiânia for the resistant phenotype and for mutations associated with resistance.METHODS:Insecticide dose-response bioassays were conducted on mosquitoes descended from field-collected eggs, and polymerase chain reaction (PCR was used to genotype 90 individuals at sites implicated in pyrethroid resistance.RESULTS:All mosquito populations displayed high levels of resistance to deltamethrin, as well as high frequencies of the 1016Ile kdr and 1534Cys kdrmutations.CONCLUSIONS:Aedes aegypti populations in the Goiânia area are highly resistant to deltamethrin, presumably due to high frequencies of kdr(knockdown-resistance mutations.

  11. LEAD DISTRIBUTION BY URBAN SEDIMENTS ON IMPERMEABLE AREAS OF PORTO ALEGRE - RS, BRAZIL

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    Leidy L.G. Martínez

    2010-01-01

    Full Text Available Heavy metals, like lead (Pb, are subproducts of industrial activities; however, in recent years, studies have shown that even in non-industrial areas, elevated concentrations of this element have been found. In this study, Pb concentrations were measured in 20 composite samples of urban sediments collected in an urban watershed of 4.85 km² with three types of soil use (commercial/residential, commercial and industrial in the city of Porto Alegre, RS, Brazil. Concentrations were determined by acid digestion (EPA 3050 of the 209 ìm, 150 ìm, 90 ìm, 63 ìm and 45 ìm fractions followed by atomic emission spectrophotometry with inductively coupled plasma. Average values of 178.1 ìg.g-1 (± 332; 226.5 ìg.g-1 (± 500; 245.2 ìg.g-1 (± 454.1; 272.4 ìg.g-1 (± 497.3 and 251.5 ìg.g-1 (± 322.6 were obtained in the 209, 150, 90, 63 and 45 ìm fractions, respectively. Concentrations of the metals studied were interpolated and represented geographically using Idrisi© Andes. Results show that the greatest concentrations are located in the commercial part of the study area, characterized as presenting high vehicle flow most of the day, with this being considered a potential source of lead. All concentrations were above that of the local background. Studies of this type are important because they make the establishment of control targets possible within sustainable management of water resources, allowing inferences regarding future pollution scenarios of local water resources.

  12. Firm size and productivity. Evidence from the electricity distribution industry in Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Tovar, Beatriz [Departmento de Analisis Economico Aplicado y EIT, Universidad de Las Palmas de Gran Canaria (Spain); Javier Ramos-Real, Francisco [Departamento de Analisis Economico, Facultad de Ciencias Economicas y Empresariales, Campus de Guajara, Universidad de La Laguna, La Laguna, S/C de Tenerife, Espana (Spain); De Almeida, Edmar Fagundes [IE-UFRJ (Instituto de Economia-Universidade Federal do Rio de Janeiro) (Brazil)

    2011-02-15

    In this paper we apply Stochastic Frontier Analysis through a distance function to investigate the impact of firm size on productivity development in electricity distribution. We use a sample of seventeen Brazilian firms from 1998 to 2005 and decompose productivity into technical efficiency, scale efficiency and technical change. Moreover, a further step is to decompose the technical change measurement into several components. The results indicate that firm size is important for industry's productivity, and therefore a key aspect to consider when making decisions that affect the market structure in the electricity distribution industry. (author)

  13. Multiparameter probability distributions for heavy rainfall modeling in extreme southern Brazil

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    Samuel Beskow

    2015-09-01

    New hydrological insights for the region: The Anderson–Darling and Filliben tests were the most restrictive in this study. Based on the Anderson–Darling test, it was found that the Kappa distribution presented the best performance, followed by the GEV. This finding provides evidence that these multiparameter distributions result, for the region of study, in greater accuracy for the generation of intensity–duration–frequency curves and the prediction of peak streamflows and design hydrographs. As a result, this finding can support the design of hydraulic structures and flood management in river basins.

  14. Breeding Guild Determines Frog Distributions in Response to Edge Effects and Habitat Conversion in the Brazil's Atlantic Forest.

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    Rodrigo B Ferreira

    Full Text Available Understanding the response of species with differing life-history traits to habitat edges and habitat conversion helps predict their likelihood of persistence across changing landscape. In Brazil's Atlantic Forest, we evaluated frog richness and abundance by breeding guild at four distances from the edge of a reserve: i 200 m inside the forest, ii 50 m inside the forest, iii at the forest edge, and iv 50 m inside three different converted habitats (coffee plantation, non-native Eucalyptus plantation, and abandoned pastures, hereafter matrix types. By sampling a dry and a wet season, we recorded 622 individual frogs representing 29 species, of which three were undescribed. Breeding guild (i.e. bromeliad, leaf-litter, and water-body breeders was the most important variable explaining frog distributions in relation to edge effects and matrix types. Leaf-litter and bromeliad breeders decreased in richness and abundance from the forest interior toward the matrix habitats. Water-body breeders increased in richness toward the matrix and remained relatively stable in abundance across distances. Number of large trees (i.e. DBH > 15 cm and bromeliads best explained frog richness and abundance across distances. Twenty species found in the interior of the forest were not found in any matrix habitat. Richness and abundance across breeding guilds were higher in the rainy season but frog distributions were similar across the four distances in the two seasons. Across matrix types, leaf-litter species primarily used Eucalyptus plantations, whereas water-body species primarily used coffee plantations. Bromeliad breeders were not found inside any matrix habitat. Our study highlights the importance of primary forest for bromeliad and leaf-litter breeders. We propose that water-body breeders use edge and matrix habitats to reach breeding habitats along the valleys. Including life-history characteristics, such as breeding guild, can improve predictions of frog

  15. Detection and distribution of rotavirus in raw sewage and creeks in Sao Paulo, Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Mehnert, D.U.; Stewien, K.E. (Univ. of Sao Paulo (Brazil))

    1993-01-01

    Rotavirus invection is an important cause of hospitalization and mortality of infants and children in developing countries, especially where the water supply and sewage disposal systems are in precarious conditions. This report describes the detection, quantitation, and distribution of rotaviruses in domestic sewage and sewage polluted creeks in the city of San Paulo. 22 refs., 1 fig., 3 tabs.

  16. The Design and Program Evaluation of a Distributed PBL Curriculum for Training Family Doctors in Brazil

    Science.gov (United States)

    Tomaz, Jose B. C.; van der Molen, Henk T.; Mamede, Silvia

    2013-01-01

    Over the past decade Problem-based Learning (PBL) and distance education have been combined as educational approaches in higher education. This combination has been called distributed PBL (dPBL). However, more research is needed to obtain more evidence and deeper insight in how to design and implement dPBL. The present study aims at describing the…

  17. A model based on environmental factors for diameter distribution in black wattle in Brazil.

    Science.gov (United States)

    Sanquetta, Carlos Roberto; Behling, Alexandre; Dalla Corte, Ana Paula; Péllico Netto, Sylvio; Rodrigues, Aurelio Lourenço; Simon, Augusto Arlindo

    2014-01-01

    This article discusses the dynamics of a diameter distribution in stands of black wattle throughout its growth cycle using the Weibull probability density function. Moreover, the parameters of this distribution were related to environmental variables from meteorological data and surface soil horizon with the aim of finding a model for diameter distribution which their coefficients were related to the environmental variables. We found that the diameter distribution of the stand changes only slightly over time and that the estimators of the Weibull function are correlated with various environmental variables, with accumulated rainfall foremost among them. Thus, a model was obtained in which the estimators of the Weibull function are dependent on rainfall. Such a function can have important applications, such as in simulating growth potential in regions where historical growth data is lacking, as well as the behavior of the stand under different environmental conditions. The model can also be used to project growth in diameter, based on the rainfall affecting the forest over a certain time period.

  18. A Model Based on Environmental Factors for Diameter Distribution in Black Wattle in Brazil

    Science.gov (United States)

    Sanquetta, Carlos Roberto; Behling, Alexandre; Dalla Corte, Ana Paula; Péllico Netto, Sylvio; Rodrigues, Aurelio Lourenço; Simon, Augusto Arlindo

    2014-01-01

    This article discusses the dynamics of a diameter distribution in stands of black wattle throughout its growth cycle using the Weibull probability density function. Moreover, the parameters of this distribution were related to environmental variables from meteorological data and surface soil horizon with the aim of finding a model for diameter distribution which their coefficients were related to the environmental variables. We found that the diameter distribution of the stand changes only slightly over time and that the estimators of the Weibull function are correlated with various environmental variables, with accumulated rainfall foremost among them. Thus, a model was obtained in which the estimators of the Weibull function are dependent on rainfall. Such a function can have important applications, such as in simulating growth potential in regions where historical growth data is lacking, as well as the behavior of the stand under different environmental conditions. The model can also be used to project growth in diameter, based on the rainfall affecting the forest over a certain time period. PMID:24932909

  19. Growth trends, genotype-environment interaction and genetic gains in six-year-old rubber tree clones (Hevea in São Paulo State, Brazil

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    Gonçalves Paulo de Souza

    1998-01-01

    Full Text Available Budwood from seven different clones of rubber tree [Hevea brasiliensis (Willd. ex Adr. de Juss. Müell. Arg.] was planted in replicated trials in four different test sites in the plateau region of the state of São Paulo, Brazil. The clones represented a range of imported germplasm, whereas the locations were selected to represent a range of rubber growing areas. Girths were measured for six years consecutively, before the initiation of tapping for latex. Total number of latex vessel rings (lvr and bark thickness (bt were measured at six years. The largest average for all characters was observed in Matão. Overall means for girth, total number of latex vessel rings and bark thickness at six years were 35.26 cm, 11.30 units and 4.83 mm, respectively. Both the test sites and clones showed statistically significant differences in girth, lvr and bt values. There were significant clone x site interactions. Girth at one year was not a reliable predictor of future field performance. Broad sense heritability for girth was 0.16, and for lvr and bt it was 0.28 and 0.40, respectively, at six years. Repeatability was quite high, from 0.52 to 0.75 for all characters in all years. When two clones out of seven were selected, expected genetic gain in girth was about 2.0%; for lvr and bt it was 7.0% and 14.6%, respectively.

  20. Impact of genotype and cooking style on the content, retention, and bioacessibility of β-carotene in biofortified cassava (Manihot esculenta Crantz) conventionally bred in Brazil.

    Science.gov (United States)

    Berni, Paulo; Chitchumroonchokchai, Chureeporn; Canniatti-Brazaca, Solange G; De Moura, Fabiana F; Failla, Mark L

    2014-07-16

    Biofortification is a strategy for decreasing micronutrient deficiencies in vulnerable populations by increasing nutrient density in staple food crops. Roots from five varieties of cassava biofortified with β-carotene (βC), three parental accessions, and one variety of commonly consumed white cassava from Brazil were investigated. Roots from biofortified varieties contained up to 23-fold higher βC than white cassava, and the additional complement of βC was primarily the all-trans isomer. At least 68% of βC per gram fresh weight was retained after boiling or boiling and briefly frying. Micellarization of βC during simulated digestion of fried root exceeded that of boiled root. Apical uptake of all-trans-βC from mixed micelles by Caco-2 cells was affected by an interaction between variety and cooking style. These results suggest that Brazilian cassava biofortified with βC has the potential to reduce vitamin A deficiency without requiring major changes in local and ethnic styles of home cooking.

  1. Distribution of the type III DNA methyltransferases modA, modB and modD among Neisseria meningitidis genotypes: implications for gene regulation and virulence.

    Science.gov (United States)

    Tan, Aimee; Hill, Dorothea M C; Harrison, Odile B; Srikhanta, Yogitha N; Jennings, Michael P; Maiden, Martin C J; Seib, Kate L

    2016-02-12

    Neisseria meningitidis is a human-specific bacterium that varies in invasive potential. All meningococci are carried in the nasopharynx, and most genotypes are very infrequently associated with invasive meningococcal disease; however, those belonging to the 'hyperinvasive lineages' are more frequently associated with sepsis or meningitis. Genome content is highly conserved between carriage and disease isolates, and differential gene expression has been proposed as a major determinant of the hyperinvasive phenotype. Three phase variable DNA methyltransferases (ModA, ModB and ModD), which mediate epigenetic regulation of distinct phase variable regulons (phasevarions), have been identified in N. meningitidis. Each mod gene has distinct alleles, defined by their Mod DNA recognition domain, and these target and methylate different DNA sequences, thereby regulating distinct gene sets. Here 211 meningococcal carriage and >1,400 disease isolates were surveyed for the distribution of meningococcal mod alleles. While modA11-12 and modB1-2 were found in most isolates, rarer alleles (e.g., modA15, modB4, modD1-6) were specific to particular genotypes as defined by clonal complex. This suggests that phase variable Mod proteins may be associated with distinct phenotypes and hence invasive potential of N. meningitidis strains.

  2. [DISTRIBUTION OF GENOTYPES OF C825T POLYMORPHISM β3-SUBUNIT G-PROTEIN GENE IN PATIENTS WITH ARTERIAL HYPERTENSION ACCORDING THE DEGREE OF OBESITY].

    Science.gov (United States)

    Moiseyenko, I; Prystupa, L; Garbuzova, V; Pogorielova, O; Opolonskaya, N

    2015-01-01

    Arterial hypertension (AH) and obesity - risk factors for cardiovascular diseases and their complications, leading to high morbidity and mortality. These nosologies notedly linked, because have common etiological factors, pathophysiological mechanisms and genetic determination. The aim this research was to analyze the distribution of genotypes of the C825T polymorphism of β3-subunit G-protein gene (GNB3) according the degree of obesity and to assess the risk of obesity in patients with AH. Patients were divided into three groups according the degree of obesity. We used clinical, anthropometric, instrumental, molecular-genetic and statistical methods. The significance of differences of alleles and genotypes frequency was determined by test χ². For comparing the groups used nonparametric Mann-Whitney and Kruskal-Wallis tests. A value of phypertension and obesity (χ² = 27,976, p obesity. The risk of obesity in T allele carriers was in 2.2 times higher than in C allele carriers in patients with AH. In summary, our study showed association of C825T polymorphism of the GNB3 with obesity, but did not prove the association this with the degree of obesity i patients with AH.

  3. Prevalence, Genotype Distribution and Risk Factors for Cervical Human Papillomavirus Infection in the Grand Tunis Region, Tunisia.

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    Monia Ardhaoui

    Full Text Available Implementation of Human Papillomavirus (HPV vaccination should be considered a key cervical cancer prevention strategy in Tunisia, where Pap smear screening is not efficient. This study aims to estimate the prevalence and to identify risk factors associated with HPV infection among women from Grand Tunis, Tunisia. We conducted a cross-sectional study, between December 2012 and May 2013. Eligible women for this study were those aged 18-65 years, sexually active, who sought medical attention at their primary health care centre or clinic in Grand Tunis, Tunisia and who gave written consent. A liquid-based Pap smear sample was obtained from all women using a cervical brush. Only women with betaglobin positive test were further analysed for HPV detection and typing. A nested-PCR of the L1 region was performed followed by reverse line blot hybridization to facilitate the specific detection of 31 HPV genotypes. Multiple logistic regression modeling was used for the analysis of associations between variables with some considered possible confounders after checking for interactions. A total of 391 women were enrolled in this study and 325 out of the 391 cervical samples were positive for the betaglobin test. Overall HPV prevalence was 13.2% [9.8%-17.5%], with the following most prevalent HPV genotypes: HPV6 (40%, HPV40 (14%, HPV16 (12%, HPV52 (9%, HPV31 and HPV59 (7%, followed by HPV68 (4%. Mean age of HPV positive women was 40.7±0.92 years. Independently associated risk factors of HPV infection were smoking (OR:2.8 [0.8-9.6], low income (OR:9.6 [1.4-63.4, bad housing type (OR:2.5 [1-6.8], partner with multiple sexual relationship (OR:4.5 [0.9-22.9] and single women (widowed, divorced, separated, never married (OR:6.9 [1.1-42.2]. This study provides the first national-based estimate of HPV prevalence in Tunisia. Our findings contribute to the evidence on the current burden of HPV infection, the critical role of sexual behaviour and socioeconomic status

  4. Regional validity of the parameters of a distributed runoff-erosion model in the semi-arid region of Brazil

    Institute of Scientific and Technical Information of China (English)

    SRINIVASAN Vajapeyam Srirangachar; PAIVA Fernanda Maria de Lima

    2009-01-01

    The present paper examines the validity of the application of a distributed rainfall-runoff-erosion model on a regional basis in a semi-arid region of Brazil.The model tested is known as WESP (Water Erosion Simulation Program) developed by Lopes (1987).The model simulates the hydrograph and the sedi-ment graph for individual events and thus, the model when properly calibrated can serve as a predic-tive tool for runoff and soil erosion on an individual or a continuous basis.The possibility of the exis-tence of regionally applicable values for the parameters of the model WESP would be very interesting from the point of view of predictability of runoff and soil erosion from ungauged basins in the region.For this purpose, data collected in several experimental units in the experimental basin of Sume as well as in the experimental basin of Sao Joao de Cariri have been used.The model was calibrated and validated in each of the experimental units (consisting of erosion plots and micro-basins) and the av-erage value from all of the units for each of the parameters was considered to be the regional value.With these average values, all the events in all the experimental units were simulated.The results show that the runoff and erosion values simulated with this single parameter set were very good in all the units, being well within the acceptable deviations.

  5. Regional validity of the parameters of a distributed runoff-erosion model in the semi-arid region of Brazil

    Institute of Scientific and Technical Information of China (English)

    SRINIVASAN; Vajapeyam; Srirangachar; PAIVA; Fernanda; Maria; de; Lima

    2009-01-01

    The present paper examines the validity of the application of a distributed rainfall-runoff-erosion model on a regional basis in a semi-arid region of Brazil. The model tested is known as WESP (Water Erosion Simulation Program) developed by Lopes (1987). The model simulates the hydrograph and the sediment graph for individual events and thus, the model when properly calibrated can serve as a predictive tool for runoff and soil erosion on an individual or a continuous basis. The possibility of the existence of regionally applicable values for the parameters of the model WESP would be very interesting from the point of view of predictability of runoff and soil erosion from ungauged basins in the region. For this purpose, data collected in several experimental units in the experimental basin of Sumé as well as in the experimental basin of So Joo de Cariri have been used. The model was calibrated and validated in each of the experimental units (consisting of erosion plots and micro-basins) and the average value from all of the units for each of the parameters was considered to be the regional value. With these average values, all the events in all the experimental units were simulated. The results show that the runoff and erosion values simulated with this single parameter set were very good in all the units, being well within the acceptable deviations.

  6. Stratigraphical discontinuities, tropical landscape evolution and soil distribution relationships in a case study in SE-Brazil

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    M. Cooper

    2002-09-01

    Full Text Available On a regional summit surface in the county of Piracicaba (SP within the Peripheric Depression of São Paulo, formed of discontinued flattened tops, there is an abrupt transition between a Typic Hapludox and a Kandiudalfic Eutrudox, together with two stoneline layers. Using stratigraphical, mineralogical, and cartographic studies, this transition and the soil distribution of this surface were studied, correlating them with the different parent materials and the morphoclimatic model of landscape evolution in Southeastern Brazil. The Typic Hapludox was formed on a sandy Cenozoic deposit (Q that overlies a pellitic deposit of the Iratí formation (Pi, representing a regional erosive discordance. Westwards to the Piracicaba River, this sequence is interrupted by a diabase sill overlain by a red clayey material which gave origin to the Kandiudalfic Eutrudox. Two post-Permian depositional events were identified by the two stonelines and stratigraphical discontinuities. The first event generated the deposition of a sandy sediment in the form of levelled alveoluses on regional barriers, most of these formed by dikes and diabase sills, probably during a drier phase. The second depositional event, leading to the deposition of the red clay was probably the dissection of the previously formed pediplane during a humid climate, followed by another pedimentation process during a later, drier period.

  7. Spatial distribution and enteroparasite contamination in peridomiciliar soil and water in the Apucaraninha Indigenous Land, southern Brazil.

    Science.gov (United States)

    da Silva, Joseane Balan; Piva, Camila; Falavigna-Guilherme, Ana Lúcia; Rossoni, Diogo Francisco; de Ornelas Toledo, Max Jean

    2016-04-01

    The prevalence and distribution of soil and water samples contaminated with enteroparasites of humans and animals with zoonotic potential (EHAZP) in Apucaraninha Indigenous Land (AIL), southern Brazil, was evaluated. An environmental survey was conducted to evaluate the presence of parasitic forms in peridomiciliary soil and associated variables. Soil samples were collected from 40/293 domiciles (10 domiciles per season), from November 2010 to June 2011, and evaluated by modified methods of Faust et al. and Lutz. Analyses of water from seven consumption sites were also performed. The overall prevalence of soil samples contaminated by EHAZP was 23.8 %. The most prevalent parasitic forms were cyst of Entamoeba spp. and eggs of Ascaris spp. The highest prevalence of contaminated soil samples was observed in winter (31 %). The probability map obtained with geostatistical analyses showed an average of 47 % soil contamination at a distance of approximately 140 m. The parasitological analysis of water did not detect Giardia spp. or Cryptosporidium spp. and showed that all collection points were within the standards of the Brazilian law. However, the microbiological analysis showed the presence of Escherichia coli in 6/7 sampled points. Despite the low level of contamination by EHAZP in peridomiciliar soil and the absence of pathogenic protozoa in water, the AIL soil and water (due to the presence of fecal coliforms) are potential sources of infection for the population, indicating the need for improvements in sanitation and water treatment, in addition periodic treatment of the population with antiparasitic.

  8. Spatial distribution of scorpions according to the socioeconomic conditions in Campina Grande,State of Paraíba, Brazil

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    Thassiany Sarmento Oliveira de Almeida

    Full Text Available Abstract: INTRODUCTION: Due to its frequency and morbidity, such as that caused by scorpions have achieved public health importance in certain regions of the world. The present exploratory ecological study aimed to characterize the epidemiological profile and spatial distribution of scorpion stings in Campina Grande, State of Paraíba in Northeastern Brazil. METHODS: Geographical information system techniques were used to record the scorpion stings, and Google Earth software, Track Maker, and ArcGIS 10 Esri were used as geocoding databases. The Moran test was used to evaluate spatial correlation, and the Pearson chi-square test was used to analyze associations between scorpion stings and socioeconomic variables. RESULTS: The study evaluated 1,466 scorpion stings. Envenomations were more frequent among women (n = 908, 61.9%, and most patients were aged 13-28 years (n = 428, 29.2%. The Southern region of the city had the largest number of registered cases (n = 548, 37.4%, followed by the Western region (n = 510, 34.8%. CONCLUSIONS: Spatial analysis of scorpionism revealed an irregular occurrence in Campina Grande. Further, no association was observed between the socioeconomic factors analyzed and the geographic location of the scorpion envenomations. Detection of spatial areas with an increased risk of scorpionism can help prioritize adoption of preventive measures in these regions to reduce the associated incidence and morbidity.

  9. Spatial and temporal distribution of fish eggs and larvae in a subtropical coastal lagoon, Santa Catarina State, Brazil

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    Luis C. P. Macedo-Soares

    Full Text Available This study investigated the variation in abundance, distribution and composition of ichthyoplankton in a lagoon in southern Brazil through the year and at different stations within the lagoon. Ibiraquera Lagoon is a shallow coastal lagoon connected to the sea by a semi-permanent sandbar. Ichthyoplankton samples were collected monthly from December 2003 to December 2004, with a 200 µm mesh net using horizontal surface hauls. A colder, drier period was detected, contrasting with warm months during which salinity varied depending on rainfall and whether the sandbar was open or closed. The mean abundance of ichthyoplankton over the study period was 459.6 ± 76.2 (SE eggs · 100 m-3 and 63.6 ± 7.9 (SE larvae · 100 m-3, and they were present during all months. Significantly higher abundances of eggs and larvae were observed during warm months. The community was dominated by the family Engraulidae followed by Clupeidae, Gobiidae and Mugilidae. Engraulidae and Clupeidae were present throughout the year, with greater abundances in months with higher temperatures. Some coastal fish species spawn in Ibiraquera Lagoon, mainly near to the sandbar, demonstrating that the lagoon is a spawning area for coastal stock. We recommend the establishment of environmental procedures to promote the conservation of Ibiraquera Lagoon and its ichthyoplankton community.

  10. Genotype-environment interaction and the number of test sites for the genetic improvement of rubber trees (Hevea in São Paulo State, Brazil

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    Reginaldo Brito da Costa

    2000-03-01

    Full Text Available The present study quantifies the possible genotype-environment interactions and determines the ideal number of test sites for rubber trees [Hevea brasiliensis (Willd ex Adr. de Juss. Muell Arg] in the plateau region of São Paulo State. The study was based on the genetic correlation among progenies at three different sites and on estimates of genetic gains with indirect selection of rubber trees. Twenty-two half-sib progenies were planted at the Jaú, Pindorama and Votuporanga experimental stations using random blocks with five replications and 10 plants per plot. At three years of age, the plants were evaluated for their total number of latex ring vessels (NR, rubber production (RP, bark thickness (BT and girth (SG. There was significant genetic variability in the characters RP, SG and BT, mainly among progenies from Pindorama and Votuporanga. The effects of genotype-site interactions were significant for RP and SG. The finding of significant interactions was not a complicating factor because of the large genetic correlation detected. These results indicate that the use of two sites is more profitable when the gains in efficiency of selection are greater than 10%. Thus, Pindorama and Votuporanga will satisfactorily attend the studied region.O presente estudo objetivou quantificar possíveis interações de progênie x local, bem como determinar o número ideal de locais de experimentação com base em estimativas de correlação genética entre progênies nos diferentes locais e estimativa de ganhos genéticos com seleção indireta em seringueira [Hevea brasiliensis (Willd ex Adr. de Juss. Müell. Arg.]. Vinte e duas progênies de meio-irmãos foram plantadas nas Estações Experimentais de Jaú, Pindorama e Votuporanga, todas em SP, no delineamento de blocos ao acaso, com cinco repetições e dez plantas por parcela. Aos três anos de idade foram avaliados os caracteres: número total de anéis de vasos laticíferos, produção de borracha

  11. Genotyping of Toxoplasma gondii and Sarcocystis spp. in road-killed wild mammals from the Central Western Region of the State of São Paulo, Brazil

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    Virgínia Bodelão Richini-Pereira

    Full Text Available Abstract INTRODUCTION: Road-killed wild animals host zoonotic pathogens such as Toxoplasma gondii, offering a new opportunity for the epidemiological study of these infectious organisms. METHODS This investigation aimed to determine the presence of T. gondii and other apicomplexan parasites in tissue samples of 64 road-killed wild animals, using polymerase chain reaction (PCR. Positive samples were then typed by PCR-restriction fragment length polymorphism (RFLP using 7 markers: SAG1, 5′-3′SAG2, SAG3, BTUB, c29-6, PK1, and Apico. PCR-RFLP targeting 18S ribosomal RNA (rRNA genes was also performed on all samples to detect other apicomplexan parasites. RESULTS T. gondii DNA was detected in 16 tissue samples from 8 individual animals, as follows: 1 Cerdocyon thous (crab-eating fox, 1 Didelphis albiventris (white-eared opossum, 1 Lutreolina crassicaudata (lutrine opossum, 2 Myrmecophaga tridactyla (giant anteater, 1 Procyon cancrivorus (crab-eating raccoon, and 2 Sphiggurus spinosus (Paraguay hairy dwarf porcupine. Seven different T. gondii genotypes were identified, 6 of which were novel. Typing by 18S rRNA verified these 16 T. gondii-infected samples, and identified 1 Sarcocystis spp.-infected animal [Dasypus novemcinctus (nine-banded armadillo]. The amplified T. gondii (GenBank accession No. L37415.1 and Sarcocystis spp. 18S rRNA products were confirmed by sequencing. CONCLUSIONS Our results indicate that T. gondii is commonly present in wild mammals, which act as sources of infection for humans and animals, including other wild species. The approach employed herein proved useful for detecting T. gondii and Sarcocystis spp. in the environment and identifying their natural reservoirs, contributing to our understanding of host-parasite interactions.

  12. RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus).

    Science.gov (United States)

    Benestan, Laura; Gosselin, Thierry; Perrier, Charles; Sainte-Marie, Bernard; Rochette, Rémy; Bernatchez, Louis

    2015-07-01

    Deciphering genetic structure and inferring connectivity in marine species have been challenging due to weak genetic differentiation and limited resolution offered by traditional genotypic methods. The main goal of this study was to assess how a population genomics framework could help delineate the genetic structure of the American lobster (Homarus americanus) throughout much of the species' range and increase the assignment success of individuals to their location of origin. We genotyped 10 156 filtered SNPs using RAD sequencing to delineate genetic structure and perform population assignment for 586 American lobsters collected in 17 locations distributed across a large portion of the species' natural distribution range. Our results revealed the existence of a hierarchical genetic structure, first separating lobsters from the northern and southern part of the range (FCT  = 0.0011; P-value = 0.0002) and then revealing a total of 11 genetically distinguishable populations (mean FST  = 0.00185; CI: 0.0007-0.0021, P-value < 0.0002), providing strong evidence for weak, albeit fine-scale population structuring within each region. A resampling procedure showed that assignment success was highest with a subset of 3000 SNPs having the highest FST . Applying Anderson's (Molecular Ecology Resources, 2010, 10, 701) method to avoid 'high-grading bias', 94.2% and 80.8% of individuals were correctly assigned to their region and location of origin, respectively. Lastly, we showed that assignment success was positively associated with sample size. These results demonstrate that using a large number of SNPs improves fine-scale population structure delineation and population assignment success in a context of weak genetic structure. We discuss the implications of these findings for the conservation and management of highly connected marine species, particularly regarding the geographic scale of demographic independence.

  13. Ecological distribution of the shrimp camarao serrinha Artemesia longinaris (Decapoda, Penaeidae) in Fortaleza bay, Ubatuba, Brazil, in relation to abiotic factors

    OpenAIRE

    Fransozo, A.; Costa, R.C.; Castilho, A.L.; Mantelatto, F.L.

    2004-01-01

    The spatial and temporal distribution of the shrimp Artemesia longinaris in Fortaleza Bay, northern coast of Sao Paulo State, Brazil, in relation to abiotic factors, was studied. Shrimp samples were obtained on a monthly basis from November 1988 through October 1989 at seven pre-delimited transects on board of a fishing vessel supplied with double otter trawl nets. Depth was recorded at the midpoint of each transect; water and sediment samples were taken to measure salinity, temperature, text...

  14. Diversity and distribution of oligochaetes in tropical forested streams, southeastern Brazil

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    Luciana Falci Theza Rodrigues

    2015-01-01

    Full Text Available The distribution and beta diversity of oligochaete assemblages were investigated in different spatial scales to verify the influence of environmental factors and geographic distance on their structure. Two types of mesohabitats (riffles and pools were sampled in eight first-order streams located in four preservation areas (Poço D’Anta Municipal Biological Reserve, Santa Cândida Municipal Biological Reserve, Ibitipoca State Park and a private farm called Fazenda Floresta and two Atlantic Forest phytophysiognomies (Seasonal Semideciduous Forest and Rocky Field. Variations in the taxon richness, abundance and composition of the oligochaete assemblages occurred between streams and phytophysiognomies, but not between riffles and pools in the same stream. Low beta diversity values were found and both turnover and nestedness contributed similarly in the environments studied, which could have occurred because of the high capability of oligochaetes to adapt to different environmental conditions. Although the canonical correspondence analysis explained 85.5% of the data (first three axes, the partial Mantel test showed greater influence of geographic distance on the faunal composition than the environmental variables measured. Simple linear regression confirmed this result and showed that the decay of similarity increased with distance between streams. The information from this study sheds light on how environmental and spatial factors determine the variation in the distribution and diversity of oligochaetes in forested low-order streams.

  15. Seasonal distribution of gastrointestinal nematode infections in sheep in a semiarid region, northeastern Brazil

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    Maria de Fátima de Souza

    Full Text Available The objective of this study was to determine the seasonal distribution and gastrointestinal nematode parasite load in crossbred Santa Inês tracer lambs, and to correlate the rainfall during the study period with occurrences of parasitic infections. Sixty-four male tracer lambs between the ages of four and eight months were used in the study. Two tracer lambs were inserted into the herd every 28 days to determine the pattern of infective larvae available in the environment. Variation in the fecal egg count (FEC of nematodes was observed at the study site, with many samples containing undetectable parasite loads during the dry season. The larvae identified in coprocultures wereHaemonchus sp., Trichostrongylus sp.,Cooperia sp., Strongyloides sp. andOesophagostomum sp. The nematodes recovered at necropsy were Haemonchus contortus, Trichostrongylus colubriformis, Cooperia punctata, C. pectinata, Trichuris sp.,Oesophagostomum sp. and Skrajabinema ovis. The total number of larvae and the total number of immature and adult forms recovered from the tracers showed seasonal distributions that significantly correlated with the amount of rainfall received that month (p value ≅ 0.000 in all cases . The species H. contortus was predominant in the herd and should be considered to be main pathogenic nematode species in these hosts under these conditions.

  16. Spatial distribution of fish assemblages along environmental gradients in the temporary ponds of Northern Pantanal, Brazil

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    Karina K. Tondato

    2013-02-01

    Full Text Available Ten temporary ponds in northern Pantanal were studied in July 2006 to explore whether a spatial distribution pattern existed in the composition of fish assemblages, and to identify which environmental variables determined their distribution. The existence of any spatial pattern was tested using the multivariate Mantel correlogram, while the influence of environmental variables was quantified by a Canonical Correspondence Analysis (CCA. A total of 8735 individuals was sampled from 29 species, predominantly represented by Hyphessobrycon elachys and Serrapinnus calliurus. Composition of fish assemblages varied among ponds, but this variation had no significant spatial pattern for any of the distance classes considered, thus indicating that the species composition varied independently of the distance between ponds. This suggests that stochastic dispersal processes did not influence the spatial structure of species, as predicted by the neutral theory. Conversely, species composition in the ponds was determined by variables that included depth, macrophyte richness and cover. Species such as Markiana nigripinnis, Crenicichla vittata and Moenkhausia sanctaefilomenae occurred in deeper waters, while Parauchenipterus striatulus, Eigenmannia trilineata and Psellogrammus kennedyi were mainly associated with greater richness and macrophyte cover, as already demonstrated by the niche theory applied in ponds which tended to have similar characteristics and a similar fish composition.

  17. Distinctive distribution of HPV genotypes in cervical cancers in multi-ethnic Suriname: implications for prevention and vaccination.

    Science.gov (United States)

    Grunberg, M G; Chan, M; Adhin, M R

    2017-01-01

    Suriname is ranked as high-risk country for cervical cancer, but recent national data of HPV prevalence and distribution in cervical cancer is scarce. In a retrospective cross-sectional study, cervical cancer incidence, HPV prevalence and HPV-type-specific distribution were investigated in all cervical cancer cases (n = 111), diagnosed in two consecutive years. HPV presence and type-specific prevalence were determined in paraffin-embedded biopsies utilizing master-nested multiplex PCR assays, targeting 14 HPV types. The age-standardized incidence rate of cervical cancer was 22·4/100 000 women, justifying revision of the current international ranking of Suriname. Eleven HPV types were detected, with the most common types in descending order of frequency: 16, 18, 45, 66, 58/52/35. HPV16 was predominant, although with markedly low presence (25%). HPV16 or 18 infections were detected in 43% of the cases, while 28% were untyped, implicating a divergent HPV-type distribution in Suriname with significant variation in the prevalence of less common high-risk virus types and/or presence of HPV16 variants. HPV-type distribution differed between ethnic groups. A vaccination efficacy of just 28-30% was anticipated, next to an uneven vaccination impact in different ethnic groups, cautioning Suriname and other multi-ethnic countries to tailor the information presented to different ethnic communities.

  18. Ichthyoplankton distribution and abundance in the northern Todos os Santos and Camamu Bays, Bahia State - Brazil

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    Mario Katsuragawa

    2011-03-01

    Full Text Available The occurrence, distribution and abundance of ichthyoplankton in Todos os Santos and Camamu Bays were analyzed based on four samplings (winter 2003, summer 2003, winter 2004 and summer 2005. Samples were obtained by surface horizontal hauls, using a 200-µm mesh conical-cylinder plankton net. The distribution and abundance of eggs indicate a remarkable seasonal and annual variation of spawning activity in the region, especially when the two summer campaigns are compared. In summer 2003 the highest quantitative values were recorded, especially for Camamu, where the maximum reached 106.56 eggs.m-3, with an overall average of 43.46 eggs.m-3 for the two areas. In summer 2005 values were relatively low, the overall average being 3.49 eggs.m-3. The larval taxonomic composition is characterized by the predominance of gobiids, with small variation from summer to winter. Considering all the campaigns and samplings undertaken in both areas, larvae of 11 families were identified: Engraulidae, Clupeidae, Mugilidae, Atherinopsidae, Hemiramphidae, Syngnathidae, Blenniidae, Carangidae, Gobiidae, Achiridae and Tetraodontidae.O ictioplâncton coletado ao norte da baía de Todos os Santos e na baía de Camamu (Inverno 2003, Verão 2003, Inverno 2004 e Verão 2005 é analisado de forma comparativa. As amostras foram obtidas com redes de plâncton do tipo cônica-cilíndrica de 200 µm de malhagem, em arrastos horizontais de subsuperfície. Os resultados sobre a distribuição e abundância de ovos de peixes sugerem uma ampla variação sazonal e anual da desova. Entre os verões as diferenças foram especialmente visíveis, sendo observados no primeiro verão (dez/03 os maiores valores quantitativos do projeto (máximo = 106,56 ovos.m-3; média = 43,46 ovos.m-3, enquanto que no segundo verão (jan/05 os valores foram em geral baixos (média geral = 3,49 ovos.m-3. A composição taxonômica é caracterizada pela predominância de gobiídeos, com pequenas varia

  19. Ethnogeographical structure of hepatitis B virus genotype distribution in Indonesia and discovery of a new subgenotype, B9

    OpenAIRE

    Thedja, Meta Dewi; Muljono, David Handojo; Nurainy, Neni; Sukowati, Caecilia H. C.; Verhoef, Jan; Marzuki, Sangkot

    2011-01-01

    The distribution of hepatitis B virus (HBV) in the populations of island Southeast Asia is of medical and anthropological interest and is associated with an unusually high genetic diversity. This study examined the association of this HBV genetic diversity with the ethnogeography of the populations of the Indonesian archipelago. Whole genome analysis of 21 HBV isolates from East Nusa Tenggara and Papua revealed two recently reported HBV/B subgenotypes unique to the former, B7 (7 isolates) and...

  20. Occurrence and distribution of copepods (Crustacea in the epipelagial off southern Brazil

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    Antonio Frederico Campaner

    1985-01-01

    Full Text Available The copepods of plankton samples collected with a Bongo net of 0.333 mm mesh in 66 oceanographic stations of 4 transects off the States of Rio de Janeiro (RJ and Santa Catarina (SC in Nov./Dec. 75 and May 76 were qualitatively and quantitatively studied. An amount of 173 species was identified, of which Paivella naporai Wheeler, Xanthocalanus marlyae Campaner, and Corycaeus giesbrechti F. Dahl were taxonomically reviewed. Frequency and density of each species, and absolute and mean density of total copepods were determined for every station, as well as frequency of adult females and males, and young forms. Abundance was higher in the neritic than in the oceanic zone, the mean density being twice greater of the neritic zone of RJ than in that of SC and almost identical in the oceanic zone off both States except for SC in Nov./Dec. 75, where values were thrice greater than in RJ. These results were related to the distribution of water masses in the sampling areas. Copepod associations were determined for neritic and oceanic zones off the States of RJ and SC at both sampling seasons.

  1. Spatial and temporal distribution of ichthyoplankton in the upper Uruguay river, Brazil

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    Samara Hermes-Silva

    2009-08-01

    Full Text Available The distribution and abundance of fish eggs and larvae was analyzed in three sections of the Upper Uruguay river, in a stretch of 290 km. Samples were collected monthly from October, 2001 to March, 2002 during 48-h cycles at 6-h intervals between each sampling. Surface and bottom samples were collected with a 0.5-mm mesh cylindroconical net. Fishes from the Upper Uruguay river were reproductively active mainly from October to January, and this activity was more intense at the Ligeiro and Chapecó tributaries and Chapecó main river. It was observed that the tributaries are important spawning grounds and larval nursery sites, indicating the importance of preserving such environments.Foram analisadas a distribuição e abundância de ovos e larvas de peixes em três seções do Alto rio Uruguai, num trecho de 290 km. As coletas foram realizadas mensalmente no período de outubro de 2001 a março de 2002, durante um ciclo de 48 horas com intervalos de 6 horas entre as amostragens. Foram feitas coletas de superfície e fundo, nas margens e no canal central do rio, utilizando-se redes de plâncton do tipo cônicocilíndricas de malha 0,5mm. As maiores ocorrências foram verificadas entre os meses de outubro a janeiro, sendo que a atividade reprodutiva foi mais intensa nos tributários Ligeiro e Chapecó e no rio Uruguai, na foz do rio Chapecó. Foi observado neste estudo que alguns tributários se destacam como locais de desova e desenvolvimento de larvas de peixe, indicando a importância de se preservar estes ambientes.

  2. Distributed deformation structures in shallow water carbonates subsiding through a simple stress field (Jandaira Formation, NE Brazil)

    Science.gov (United States)

    Bertotti, Giovanni; Bisdom, Kevin; Bezerra, Hilario; Reijmer, John; Cazarin, Carol

    2016-04-01

    Despite the scarcity of major deformation structures such as folds and faults, the flat-lying, post-rift shallow water carbonates of the Jandaira Formation (Potiguar Basin, NE Brazil) display well-organized fracture systems distributed of tens of km2. Structures observed in the outcropping carbonates are sub-vertical, generally N-S trending mode I and hybrid veins and barren fractures, sub-vertical roughly E-W trending stylolites and sub-horizontal stylolites. These features developed during subsidence in a simple and constant stress field characterized by, beside gravity, a significant horizontal stress probably of tectonic origin. The corresponding depth curves have different origin and slopes and, therefore, cross each other resulting in position of the principal stresses which change with depth. As a result, the type and amount of fractures affecting subsiding rocks change despite the fact that the far-field stresses remain constant. Following early diagenesis and porosity elimination in the first 100-200m depth, Jandaira carbonates experienced wholesale fracturing at depths of 400-800m resulting in a network of NNW-NE trending fractures partly organized in conjugate sets with a low interfault angle and a sub-vertical intersection, and sub-vertical stylolites roughly perpendicular to the fractures. Intense fluid circulation was activated as a consequence through the carbonates. With increasing subsidence, sub-horizontal stylolites formed providing calcite which precipitated in the open fractures transforming them in veins. The Jandaira formation lost thereby the permeability it had reached during the previous stage. Because of the lack of major deformation, the outcrops of the Jandaira Formation is an excellent analog for carbonate reservoirs in the Middle East, South Atlantic and elsewhere.

  3. Thermal Niches of Two Invasive Genotypes of the Wheat Curl Mite Aceria tosichella: Congruence between Physiological and Geographical Distribution Data

    Science.gov (United States)

    2016-01-01

    The wheat curl mite (WCM), Aceria tosichella Keifer, is a major pest of cereals worldwide. It is also a complex of well-defined genetic lineages with divergent physiological traits, which has not been accounted for in applied contexts. The aims of the study were to model the thermal niches of the two most pestiferous WCM lineages, designated MT-1 and MT-8, and to assess the extent to which temperature determines the distribution of these lineages. WCM population dynamics were modeled based on thermal niche data from March to November on the area of Poland (>311,000 km2). The most suitable regions for population development were predicted and compared to empirical field abundance data. Congruence between modeled parameters and field data for mite presence were observed for both WCM lineages although congruence between modeled thermal suitability and mite field abundance was observed only for MT-8. Thermal niche data for MT-1 and MT-8 provide biological insights and aid monitoring and management of WCM and the plant viruses it vectors. The presented models accurately estimate distributions of WCM and can be incorporated into management strategies for both current and predicted climate scenarios. PMID:27123590

  4. Sodium and Potassium Absorption and Distribution in Relation to Growth and Internal Potassium Use Efficiency of K-efficient and -inefficient rice genotypes

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    A pot experiment with two rice (Oriza sativa L.) genotypes differing in internal potassium use efficiency (IKUE) was conducted under different sodium (Na) and potassium (K) levels. Adding NaC1 at a proper level enhanced rice vegetative growth and increased grain yield and IKUE under low potassium. Addition of higher rate of NaC1 had a negative effect on the growth of the K-efficient rice genotype, but did not for the K-inefficient genotype. Under low-K stress, higher NaC1 decreased IKUE of the K-efficient rice genotype but increased IKUE for the K-inefficient genotype. At tillering stage and under low-K stress, adding NaCl increased K and Na contents and decreased the ratio of K/Na for both genotypes. At harvesting stage under low-K stress, adding NaG1 increased K and Na contents and K/Na ratio for the K-efficient genotype but decreased the K/Na ratio for the K-inefficient genotype. The accumulated Na was mostly deposited in the roots and sheaths. At tillering stage, the K and Na contents and the K/Na ratios in different parts for both genotypes decreased in the following sequence: K+ in sheaths > K+ in blades > K+ in roots; Na+ in roots > Na+ in sheaths > Na+ in blades; and K/Na in sheaths 》 K/Na in roots. The K-efficient genotype had a lower K/Na ratio in roots and sheaths than the K-inefficient genotype under low-K stress. At harvesting stage, K and Na contents in grains were not affected, whereas K/Na ratio in the rice straws was increased for the K-efficient genotype but decreased for the K-inefficient genotype by Na addition. However, this was not the case under K sufficient condition.

  5. Evaluation of informative materials on leishmaniasis distributed in Brazil: criteria and basis for the production and improvement of health education materials

    Directory of Open Access Journals (Sweden)

    Zélia Maria Profeta da Luz

    Full Text Available Based on categories related to structure, content, language, and illustrations, the present study provides an evaluation of the quality of educational materials on leishmaniasis available to health services in Brazil. The 18 publications evaluated consisted of four handbooks, four guided studies, four booklets, and six leaflets. Of the total publications assessed, nine were produced by the Brazilian National Health Foundation (FUNASA, five by State and Municipal Health Departments jointly with FUNASA, and one by the Pan-American Health Organization. The evaluations were also performed by three professionals: a physician specialized in leishmaniasis, a parasitologist, and an information/communications expert. The publications failed to specify key items such as target public, objective, and bibliography. The illustrations, especially in the booklets and leaflets, failed to clarify the text, portrayed biased concepts, and omitted credits and scale. According to this study, informative materials on leishmaniasis distributed in Brazil present major limitations which jeopardize the quality of information they contain.

  6. Evaluation of informative materials on leishmaniasis distributed in Brazil: criteria and basis for the production and improvement of health education materials.

    Science.gov (United States)

    da Luz, Zélia Maria Profeta; Pimenta, Denise Nacif; Rabello, Ana; Schall, Virgínia

    2003-01-01

    Based on categories related to structure, content, language, and illustrations, the present study provides an evaluation of the quality of educational materials on leishmaniasis available to health services in Brazil. The 18 publications evaluated consisted of four handbooks, four guided studies, four booklets, and six leaflets. Of the total publications assessed, nine were produced by the Brazilian National Health Foundation (FUNASA), five by State and Municipal Health Departments jointly with FUNASA, and one by the Pan-American Health Organization. The evaluations were also performed by three professionals: a physician specialized in leishmaniasis, a parasitologist, and an information/communications expert. The publications failed to specify key items such as target public, objective, and bibliography. The illustrations, especially in the booklets and leaflets, failed to clarify the text, portrayed biased concepts, and omitted credits and scale. According to this study, informative materials on leishmaniasis distributed in Brazil present major limitations which jeopardize the quality of information they contain.

  7. Trace elements distribution in hawksbill turtle (Eretmochelys imbricata) and green turtle (Chelonia mydas) tissues on the northern coast of Bahia, Brazil.

    Science.gov (United States)

    de Macêdo, Gustavo R; Tarantino, Taiana B; Barbosa, Isa S; Pires, Thaís T; Rostan, Gonzalo; Goldberg, Daphne W; Pinto, Luis Fernando B; Korn, Maria Graças A; Franke, Carlos Roberto

    2015-05-15

    Concentrations of elements (As, Al, Ba, Ca, Cd, Co, Cr, Cu, Fe, Hg, K, Mg, Mn, Mo, Na, Ni, Pb, Sb, Se, Sr, V, Zn) were determined in liver, kidneys and bones of Eretmochelys imbricata and Chelonia mydas specimens found stranded along the northern coast of Bahia, Brazil. Results showed that the concentrations of Cd, Cu, Ni and Zn in the liver and kidneys of juvenile C. mydas were the highest found in Brazil. We also observed a significant difference (p<0.05) on the bioaccumulation of trace elements between the two species: Al, Co, Mo, Na and Se in the liver; Al, Cr, Cu, K, Mo, Ni, Pb, Sr and V in the kidneys; and Al, Ba, Ca, Cd, Mn, Ni, Pb, Se, Sr and V in the bones. This study represents the first report on the distribution and concentration of trace elements in E. imbricata in the Brazilian coast.

  8. Identification of Cryptosporidium species and genotypes in dairy cattle in Brazil Identificação de espécies e genótipos de Cryptosporidium em bovinos leiteiros no Brasil

    Directory of Open Access Journals (Sweden)

    Flavio Medeiros Paz e Silva

    Full Text Available In this study, we identified Cryptosporidium species and genotypes present in dairy cattle in the central region of São Paulo state, Brazil. Fecal specimens were collected from 200 animals (100 calves and 100 cows in ten dairy farms. Fecal samples were examined using microscopic examination (ME, enzyme immunoassay (EIA and polymerase chain reaction (PCR. Cryptosporidium species and genotypes were determined by restriction fragment length polymorphism (RFLP or DNA sequencing analysis of the SSU-rRNA and GP60 genes. The occurrence of Cryptosporidium spp. infection was 14% (28/200. The occurrence in calves (26% was significantly higher than in cows (2%. Of the 27 Cryptosporidium-positive specimens submitted to genotyping, C. andersoni was identified in 23 (85.1%, C. bovis in three (11.1%, and the zoonotic C. parvum subtype IIaA15G2R1 in one (3.7%. The study demonstrates that Cryptosporidium spp. infection was common and widespread in dairy cattle in this region and that calves have a high prevalence of C. andersoni. Furthermore, the presence of C. parvum subtype IIaA15G2R1 indicates that dairy calves from this region should be considered a potential source of zoonotic Cryptosporidium oocysts.No presente estudo foram identificadas espécies e genótipos de Cryptosporidium originadas de bovinos leiteiros na região central do estado de São Paulo, Brasil. Amostras fecais foram coletadas de 200 animais (100 bezerros e 100 vacas em 10 propriedades leiteiras. As amostras foram examinadas utilizando os métodos de microscopia óptica (MO, ensaio imunoenzimático (EI e reação em cadeia da polimerase (PCR. As espécies e genótipos de Cryptosporidium foram determinados pelo método de polimorfismo no tamanho dos fragmentos de restrição (RFLP ou sequenciamento dos genes SSU-rRNA e GP60. A infecção por Cryptosporidium spp. teve ocorrência de 14% (28/200. A ocorrência em bezerros (26% foi significativamente maior do que em vacas (2%. Do total de 27

  9. Distribution and phenotypic and genotypic detection of a metallo-β-lactamase, CphA, among bacteraemic Aeromonas isolates.

    Science.gov (United States)

    Wu, Chi-Jung; Chen, Po-Lin; Wu, Jiunn-Jong; Yan, Jing-Jou; Lee, Chin-Chi; Lee, Hsin-Chun; Lee, Nan-Yao; Chang, Chia-Ming; Lin, Yu-Tzu; Chiu, Yen-Cheng; Ko, Wen-Chien

    2012-05-01

    The objectives of the study were to investigate the distribution of cphA-related genes (cphA) encoding a CphA metallo-β-lactamase (MBL) among 51 consecutive Aeromonas blood isolates and to compare different phenotypic methods for detecting CphA. The presence of cphA was detected by PCR. Four phenotypic methods, the imipenem-EDTA combined disc test, imipenem-EDTA MBL Etest, agar dilution test and modified Hodge test (MHT), were used to detect imipenem susceptibility and MBL production. The results showed that 35 (69%) blood isolates had cphA. All (100%) of 16 Aeromonas aquariorum isolates and 12 Aeromonas veronii isolates, and 4 (80%) of 5 Aeromonas hydrophila isolates, carried cphA, but none of 15 Aeromonas caviae isolates did. With the standard inocula, irrespective of the presence or absence of cphA, all but one (50, 98%) isolates were susceptible to imipenem tested by disc diffusion, Etest and agar dilution (10(4) c.f.u. spot inocula), and did not exhibit MBL production by the imipenem-EDTA combined disc test and MBL Etest. By the agar dilution test using large inocula (10(7) c.f.u.), 34 (97%) of 35 cphA(+) isolates had imipenem MICs of ≥16 µg ml(-1), higher than the susceptible breakpoint (4 µg ml(-1)), and demonstrated positive results for the MHT, while one cphA(+) and all 17 cphA(-) isolates had imipenem MICs of ≤4 µg ml(-1). In conclusion, the distribution of cphA among aeromonads is species-specific, found in A. aquariorum, A. veronii and A. hydrophila, and the MHT may be a phenotypic screening test for CphA production.

  10. Global distribution of polymorphisms associated with delayed Plasmodium falciparum parasite clearance following artemisinin treatment: genotyping of archive blood samples.

    Science.gov (United States)

    Murai, Kenji; Culleton, Richard; Hisaoka, Teruhiko; Endo, Hiroyoshi; Mita, Toshihiro

    2015-06-01

    The recent emergence and spread of artemisinin-resistant Plasmodium falciparum isolates is a growing concern for global malaria-control efforts. A recent genome-wide analysis study identified two SNPs at genomic positions MAL10-688956 and MAL13-1718319, which are linked to delayed clearance of parasites following artemisinin combination therapy (ACT). It is expected that continuous artemisinin pressure will affect the distribution of these SNPs. Here, we investigate the worldwide distribution of these SNPs using a large number of archived samples in order to generate baseline data from the period before the emergence of ACT resistance. The presence of SNPs in MAL10-688956 and MAL13-1718319 was assessed by nested PCR RFLP and direct DNA sequencing using 653 global P. falciparum samples obtained before the reported emergence of ACT resistance. SNPs at MAL10-688956 and MAL13-1718319 associated with delayed parasite clearance following ACT administration were observed in 8% and 3% of parasites, respectively, mostly in Cambodia and Thailand. Parasites harbouring both SNPs were found in only eight (1%) isolates, all of which were from Cambodia and Thailand. Linkage disequilibrium was detected between MAL10-688956 and MAL13-1718319, suggesting that this SNP combination may have been selected by ACT drug pressure. Neither of the SNPs associated with delayed parasite clearance were observed in samples from Africa or South America. Baseline information of the geographical difference of MAL10-688956 and MAL13-1718319 SNPs provides a solid basis for assessing whether these SNPs are selected by artemisinin-based combination therapies.

  11. Epidemiology of respiratory syncytial virus in children in Cyprus during three consecutive winter seasons (2010-2013): age distribution, seasonality and association between prevalent genotypes and disease severity.

    Science.gov (United States)

    Panayiotou, C; Richter, J; Koliou, M; Kalogirou, N; Georgiou, E; Christodoulou, C

    2014-11-01

    This study reports the epidemiology of respiratory syncytial virus (RSV) in hospitalized children in Cyprus over three successive seasons (2010-2013) and the association between prevalent genotypes and disease severity. RSV infections had a circulation pattern from December to March. Most RSV-positive children (83%) were aged <2 years. Genotyping of RSV isolates showed that during the first winter season of the study (2010-2011), the only RSV genotype circulating was GA2 (RSV-A), followed by genotype BA (RSV-B) in the next winter season with only few sporadic cases of GA2. During the last winter season of the study (2012-2013) the newly emerged RSV genotype ON1 (RSV-A) was virtually the only circulating genotype. Children infected with genotype ON1 suffered a significantly milder illness compared to infections with genotypes GA2 and BA with a higher percentage of BA-infected children requiring oxygen. Our findings are in contrast to the majority of published reports that suggest RSV-A causes more severe illness than RSV-B. Therefore, further investigation of the association between RSV genotypes and disease severity is required, as it might affect treatment strategies in the future.

  12. Spontaneous viral clearance, viral load, and genotype distribution of hepatitis C virus (HCV) in HIV-infected patients with anti-HCV antibodies in Europe

    DEFF Research Database (Denmark)

    Soriano, Vincent; Mocroft, Amanda; Rockstroh, Juergen

    2008-01-01

    for hepatitis B surface antigen (HBsAg) were more likely to have spontaneously cleared HCV than were those negative for HBsAg (43% vs. 21%; aOR, 2.91 [95% CI, 1.94-4.38]). Of patients with HCV viremia, 786 (53%) carried HCV genotype 1, and 53 (4%), 440 (29%), and 217 (15%) carried HCV genotype 2, 3, and 4...... in IDUs and, conversely, was less common in HBsAg-positive patients. Of the patients with HCV viremia analyzed, 53% were found to carry HCV genotype 1, and this genotype was associated with greater serum HCV RNA levels....

  13. Distribution of hepatitis B infection in Brazil: the epidemiological situation at the beginning of the 21 st century

    Directory of Open Access Journals (Sweden)

    Francisco José Dutra Souto

    2015-01-01

    Full Text Available Abstract Brazil was formerly considered a country with intermediate hepatitis B endemicity, with large heterogeneity between Brazilian regions and areas of high prevalence, especially in the Amazon basin. Systematic vaccination of children was initiated in 1998. Between 2004 and 2009, a large population-based study reported decreased prevalence in all regions of Brazil. This review analyzed the current hepatitis B epidemiological situation in Brazil through a systematic search of the scientific literature in MEDLINE, LILACS, and CAPES thesis database, as well as disease notifications to the Information System for Notifiable Diseases. The search strategy identified 87 articles and 13 theses, resulting in 100 total publications. The most recent results indicate reduced hepatitis B prevalence nationwide, classifying Brazil as having low endemicity. Most studies showed HBV carrier prevalence less than 1%. However, there are still isolated regions with increased prevalence, particularly the Amazon, as well as specific groups, such as homeless people in large cities and isolated Afro-descendant communities in the center of the country. This review alsao detected successful vaccination coverage reported in a few studies around the country. The prevalence of anti-HBs alone ranged from 50% to 90%. However, isolated and distant localities still have low coverage rates. This review reinforces the downward trend of hepatitis B prevalence in Brazil and the need to intensify vaccination strategies for young people and adults in specific regions with persisting higher HBV infection prevalence.

  14. Characteristics of the distribution of doctors in the Mais Médicos (More Doctors) Program in the states of Brazil's Northeast.

    Science.gov (United States)

    Nogueira, Priscila Tamar Alves; Bezerra, Adriana Falangola Benjamin; Leite, Antonio Flaudiano Bem; Carvalho, Islândia Maria de Sousa; Gonçalves, Rogério Fabiano; Brito-Silva, Keila Silene de

    2016-09-01

    Inequalities in access to health, reflecting shortages and inadequate geographical distribution of health professionals, have been indicated as a challenge for Brazil. This paper analyzes the geographical distribution of professionals of the Mais Médicos Program allocated in the Northeastern Region of Brazil, through a descriptive cross-sectional study. Secondary data provided by the Health Ministry were used, and thematic maps of distribution of doctors in the Region were prepared. Data on 4,716 doctors who became members of health teams in 1,294 municipalities in six Indigenous Health Districts in the years 2013 and 2014 were analyzed. The greater part of the municipalities of the Region received between one and five doctors. The municipalities most benefited had, at least, 20% of their population in extreme poverty. 99.9% of the doctors were allocated in a Health Center or Primary Healthcare Unit. The majority were women (57%), predominantly of the 45-49 age group (24%). In spite of the advances achieved by the Program - such as distribution of the doctors in locations with greater vulnerability - some States continue to have significant shortages of healthcare.

  15. Phenotypic and genotypic comparisons reveal a broad distribution and heterogeneity of hemolysin BL genes among Bacillus cereus isolates.

    Science.gov (United States)

    Thaenthanee, Suwicha; Wong, Amy C Lee; Panbangred, Watanalai

    2005-11-25

    The presence of hemolysin BL (HBL; components L(2), L(1), and B)-encoding genes (hblC, hblD, and hblA) from 339 Bacillus cereus strains isolated in Thailand was determined. PCR analysis showed that all three hbl genes were detected in 222 strains (65.5%). Two, one or no hbl genes were detected in 3 (0.9%), 6 (1.8%), and 108 (31.8%) strains, respectively. Among the 222 strains in which all three hbl genes were detected, 210 (61.9%) displayed discontinuous hemolysis (DH) characteristic of HBL producers, while 12 (3.5%) showed continuous hemolysis (CH) on sheep blood agar. Among strains in which none of the hbl genes was detected, 97 (28.6%) displayed CH while 11 (3.2%) did not show hemolytic activity. Three strains in which two hbl genes were detected showed CH. hblC was present in five of six strains where only one hbl gene was detected, and all of them (designated SS-00-15, TG-00-06, TG-00-14, F-00-25, and NR-01-49) showed DH. The HpaII restriction profiles of PCR fragments amplified from the hblC-A region in these five strains using hblC forward (FHC) and hblA reverse (RHA(2)) primers displayed heterogeneous patterns, which indicated sequence variation. Western blot analysis using polyclonal antibodies (Pab) raised against HBL components purified from strain F837/76 showed that three of the five strains produced all three components, whereas strain TG-00-06 did not give a signal for any component, and strain TG-00-14 produced B and L(1) but not L(2). The production of L(2) by these five strains was further analyzed using the Oxoid RPLA test. Three strains gave high titers (>64) whereas strains TG-00-06 and TG-00-14 showed lower titers of 16 and 32, respectively. The data show that HBL-encoding genes are widely distributed among B. cereus isolated in Thailand and there is a high degree of heterogeneity in both the genes and proteins. This is the first report of a B. cereus strain showing DH in which all three hbl genes and their proteins were not detected by both

  16. Three new species and new distributional records of Oecetis McLachlan 1877 (Trichoptera: Leptoceridae: Leptocerinae) from Brazil.

    Science.gov (United States)

    Henriques-Oliveira, Ana Lucia; Dumas, Leandro Lourenço; Nessimian, Jorge Luiz

    2014-01-07

    The genus Oecetis is widespread over the world, being most diverse in tropical areas, especially in the Australian Region. Of about 400 described species, only 34 occur in the Neotropical Region. Herein, we describe and illustrate three new species of Oecetis from Brazil: Oecetis angelae sp. nov., O. danielae sp. nov. and O. iara sp. nov. Furthermore, O. doesburgi, O. dominguezi, and O. knutsoni are recorded for the first time in Brazil. Also, we provide new state records for 7 species: O. amazonica, O. connata, O. excisa, O. fibra, O. iguazu, O. inconspicua, and O. paranensis.

  17. Fauna of Simuliidae (Diptera from the state of Espírito Santo, Brazil: distribution, new records and list of species

    Directory of Open Access Journals (Sweden)

    Karina Bertazo

    2013-03-01

    Full Text Available Fauna of Simuliidae (Diptera from the state of Espírito Santo, Brazil: Distribution, new records and list of species. The fauna of Simuliidae in Brazil is composed of 87 species, 17 of which are recorded from the state of Espírito Santo. Entomological collections were carried out in 2010-2011 with the objective of increasing the knowledge of the species richness of this family in the state. Ninety three rivers and streams were sampled, each collection being carried out in a 50m transect. During the study period 30 species were collected, 13 of which represent new records for the state, 12 of the genus Simulium and one of the genus Lutzsimulium. Among these new state records one, Simulium lobatoi, also represents a new record from southeastern Brazil. The other newly recorded species are: Lutzsimulium hirticosta, Simulium distinctum, Simulium exiguum, Simulium oyapockense, Simulium botulibranchium, Simulium petropoliense, Simulium clavibranchium, Simulium rappae, Simulium minusculum, Simulium dinellii, Simulium ochraceum and Simulium scutistriatum.

  18. Candida parapsilosis (sensu lato) isolated from hospitals located in the Southeast of Brazil: Species distribution, antifungal susceptibility and virulence attributes.

    Science.gov (United States)

    Ziccardi, Mariangela; Souza, Lucieri O P; Gandra, Rafael M; Galdino, Anna Clara M; Baptista, Andréa R S; Nunes, Ana Paula F; Ribeiro, Mariceli A; Branquinha, Marta H; Santos, André L S

    2015-12-01

    Candida parapsilosis (sensu lato), which represents a fungal complex composed of three genetically related species - Candida parapsilosis sensu stricto, Candida orthopsilosis and Candida metapsilosis, has emerged as an important yeast causing fungemia worldwide. The goal of the present work was to assess the prevalence, antifungal susceptibility and production of virulence traits in 53 clinical isolates previously identified as C. parapsilosis (sensu lato) obtained from hospitals located in the Southeast of Brazil. Species forming this fungal complex are physiologically/morphologically indistinguishable; however, polymerase chain reaction followed by restriction fragment length polymorphism of FKS1 gene has solved the identification inaccuracy, revealing that 43 (81.1%) isolates were identified as C. parapsilosis sensu stricto and 10 (18.9%) as C. orthopsilosis. No C. metapsilosis was found. The geographic distribution of these Candida species was uniform among the studied Brazilian States (São Paulo, Rio de Janeiro and Espírito Santo). All C. orthopsilosis and almost all C. parapsilosis sensu stricto (95.3%) isolates were susceptible to amphotericin B, fluconazole, itraconazole, voriconazole and caspofungin. Nevertheless, one C. parapsilosis sensu stricto isolate was resistant to fluconazole and another one was resistant to caspofungin. C. parapsilosis sensu stricto isolates exhibited higher MIC mean values to amphotericin B, fluconazole and caspofungin than those of C. orthopsilosis, while C. orthopsilosis isolates displayed higher MIC mean to itraconazole compared to C. parapsilosis sensu stricto. Identical MIC mean values to voriconazole were measured for these Candida species. All the isolates of both species were able to form biofilm on polystyrene surface. Impressively, biofilm-growing cells of C. parapsilosis sensu stricto and C. orthopsilosis exhibited a considerable resistance to all antifungal agents tested. Pseudohyphae were observed in 67.4% and 80

  19. Distribution of chemical compartments of soil organic matter and c stocks of a cambisol from south Brazil as affected by Pinus afforestation

    Directory of Open Access Journals (Sweden)

    Henrique Cesar Almeida

    2012-01-01

    Full Text Available Distribution and stocks of soil organic matter (SOM compartments after Pinus monoculture introduction in a native pasture area of a Cambisol, Santa Catarina, Brazil, were investigated. Pinus introduction increased soil acidity, content of exchangeable Al+3 and diminished soil nutrients. Nevertheless, soil C stock increased in all humic fractions of the 0-5 cm layer after Pinus afforestation. In the subsurface, the vegetation change only promoted SOM redistribution from the NaOH-extractable humic substances to a less hydrophobic humin fraction. Under Pinus, soil organo-mineral interactions were relevant up to a 15 cm depth, while in pasture environment, this mechanism occurred mainly in the surface layer.

  20. Avaliação de genótipos de pimentão no período de inverno, em Araguari, MG Genotypic evaluation of sweet pepper in the winter season in Araguari, MG, Brazil

    Directory of Open Access Journals (Sweden)

    José Ricardo Peixoto

    1999-10-01

    Full Text Available Desenvolveu-se um trabalho de pesquisa na Fazenda Jordão em Araguari, MG (18º38'30" S e 48º11'18" O, na época do inverno, com o objetivo de verificar o desempenho agronômico de genótipos de pimentão. Utilizou-se o delineamento experimental de blocos casualizados, com 17 tratamentos (17 genótipos e quatro repetições. A parcela experimental foi constituída por uma fileira com 30 plantas, no espaçamento de 1,00 x 0,45 m. Efetuou-se um total de dez colheitas sendo a primeira feita aos 28 de julho de 1996 (77 dias após o transplante e a última em 9 de novembro de 1996. Vários híbridos F1 apresentaram boas características agronômicas, podendo ser plantadas na região, no período de inverno, principalmente Lygia, Magali e Magali R, Acuário, Luis, Fresco (BS 50-30 e Sambor. O híbrido Lygia F1 destacou-se em produtividade, seguido por Acuário F1 e Magali F1, e também em número total de frutos, porém apresentou formato de fruto próximo ao quadrado e classificação inferior de frutos extra AA. Os genótipos Acuário F1, Sambor F1, Fresco (BS 50-30 F1, Luis F1 e All Big se destacaram em frutos tipo extra AA, enquanto Magna Super, Nacional AG-506, Itaipu e Hércules AG-672, apresentaram maior número de frutos tipo extra A.An experimental field was carried out in the Jordão farm, located in Araguari, MG, Brazil, at 18º38'30" S and 48º11'18" W, during the winter season, with the purpose of evaluating the agronomic potential of sweet pepper cultivars. The experimental design was in randomized blocks with 17 treatments (17 genotypes with four replications. The experimental plots were made up each of one line with 30 plants, with 1 m of space between lines and 0,45 m between plants. A total of ten harvestings were made starting on July 28, 1996 (77 days after transplanting and ending on November 9, 1996. Several F1 hybrids as Lygia F1, Magali F1, Magali R F1, Acuário F1, Luis F1, Fresco (BS 50-30 F1 and Sambor F1 showed good

  1. Sodium and Potassium Absorption and Distribution in Relation to Growth and Internal Potassium Use Efficiency of K—efficient and—inefficient rice genotypes

    Institute of Scientific and Technical Information of China (English)

    LIUJIANXIANG; YANGXIAOE; 等

    2001-01-01

    A pot experiment with two rice(Oriza saiva L.)genotypes differing in internal potassium use efficiency (IKUE) was condcucted under different sodium( Na) and potassium(k) levels.Addin NaCl at a proper level enhanced rice vegetative growth and increased grain yield and IKUE under low potassium Addition of higher rate of NaCl had a negative effect on the growth of the K-efficient rice genotype,but did not fro the K-inefficient genotype.Under low-K stress,higher NaCl decreased IKUE of the K-efficient rices genotype but increased IKUE for the K-inefficient genotype,At tillering stage and under low-K stress,adding NaCl increased K and Na contents and decreased the ration of K/Na both genotypes ,At harvesting stage under low-K stress,adding NaCl increased K and Na contents and K/Na ratio for the K-efficient genotype but decreased the K/Na ratio for the K=inefficient genotype.The accumulated Na was mostly deposited in the roots and sheaths ,At tillering stage,the K and Na contents and the K/Na ratios in different parts for both genotypes decreased in the following sequence:K+ in sheaths >K+ in blades>K+ in roots;Na+ in roots >Na+ in sheaths>Na+ in blades;and K/Na in sheaths ≥K/Na in roots.The K-effcient genotype had a lower K/Na ratio in roots and sheaths than the K-inefficient genotype under low-K stress,At harvesting stage,K and Na contents in grains were not affected ,hereas K/Na ratio in the rice straws was increased for the K-efficient genotype but decreased for the K-inefficient genotype by Na addition.However,this was not the case under K sufficient condition.

  2. HPV genotypes in invasive cervical cancer in Danish women

    DEFF Research Database (Denmark)

    Kirschner, Benny; Junge, Jette; Holl, Katsiaryna;

    2013-01-01

    Human papillomavirus (HPV) genotype distribution in invasive cervical cancers may differ by geographic region. The primary objective of this study was to estimate HPV-genotype distribution in Danish women with a diagnosis of invasive cervical cancer.......Human papillomavirus (HPV) genotype distribution in invasive cervical cancers may differ by geographic region. The primary objective of this study was to estimate HPV-genotype distribution in Danish women with a diagnosis of invasive cervical cancer....

  3. HBV genotypic variability in Cuba.

    Science.gov (United States)

    Loureiro, Carmen L; Aguilar, Julio C; Aguiar, Jorge; Muzio, Verena; Pentón, Eduardo; Garcia, Daymir; Guillen, Gerardo; Pujol, Flor H

    2015-01-01

    The genetic diversity of HBV in human population is often a reflection of its genetic admixture. The aim of this study was to explore the genotypic diversity of HBV in Cuba. The S genomic region of Cuban HBV isolates was sequenced and for selected isolates the complete genome or precore-core sequence was analyzed. The most frequent genotype was A (167/250, 67%), mainly A2 (149, 60%) but also A1 and one A4. A total of 77 isolates were classified as genotype D (31%), with co-circulation of several subgenotypes (56 D4, 2 D1, 5 D2, 7 D3/6 and 7 D7). Three isolates belonged to genotype E, two to H and one to B3. Complete genome sequence analysis of selected isolates confirmed the phylogenetic analysis performed with the S region. Mutations or polymorphisms in precore region were more common among genotype D compared to genotype A isolates. The HBV genotypic distribution in this Caribbean island correlates with the Y lineage genetic background of the population, where a European and African origin prevails. HBV genotypes E, B3 and H isolates might represent more recent introductions.

  4. The distinct distribution and phylogenetic characteristics of dengue virus serotypes/genotypes during the 2013 outbreak in Yunnan, China: Phylogenetic characteristics of 2013 dengue outbreak in Yunnan, China.

    Science.gov (United States)

    Wang, Binghui; Yang, Henglin; Feng, Yue; Zhou, Hongning; Dai, Jiejie; Hu, Yunzhang; Zhang, Li; Wang, Yajuan; Baloch, Zulqarnain; Xia, Xueshan

    2016-01-01

    Since 2000, sporadic imported cases of dengue fever were documented almost every year in Yunnan Province, China. Unexpectedly, a large-scale outbreak of dengue virus (DENV) infection occurred from August to December 2013, with 1538 documented cases. In the current study, 81 dengue-positive patient samples were collected from Xishuangbanna, the southernmost prefecture of the Yunnan province, and 23 from Dehong, the westernmost prefecture of the Yunnan province. The full-length envelope genes were amplified and sequenced. Phylogenetic analysis revealed that nine strains (39.1%) and 14 strains (60.9%) from the Dehong prefecture were classified as genotype I of DENV-1 and Asian I genotype of DENV-2, respectively. All strains from Xishuangbanna were identified as genotype II of DENV-3. Bayesian coalescent analysis indicates that the outbreak originated from bordering southeastern Asian countries. These three epidemic genotypes were predicted to originate in Thailand and then migrate into Yunnan through different routes.

  5. Richness, geographic distribution and ecological aspects of the fern community within the Murici Ecological Station in the state of Alagoas, Brazil

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    Anna Flora de Novaes Pereira

    2013-12-01

    Full Text Available We conducted a floristic survey of ferns within the Murici Ecological Station (remnant of the northeastern Atlantic Forest, located near the municipalities of Messias and Murici, in the state of Alagoas, Brazil. To increase knowledge of the ferns of Alagoas, we evaluated the species occurring in the study area in terms of richness, composition, geographic distribution, similarities with species in other Brazilian biomes, regional conservation status and ecological aspects. Data were obtained from field work conducted between March 2009 and September 2010. We identified 107 species of ferns, of which 19 represent new records for Alagoas. The richest families were Pteridaceae (29 species and Polypodiaceae (22 species. The richest genera were Adiantum (15 species and Thelypteris (9 species. Most of the species sampled are widely distributed throughout Brazil and the Americas. Within the context of the northeastern Atlantic Forest, 12 species were considered endangered. Concerning the ecological aspects, 88.8% of the species identified were herbaceous, 57.9% were terrestrial and 70.0% occurred in the forest interior.

  6. White grubs (Coleoptera, Melolonthidae in the "Planalto Region", Rio Grande do Sul state, Brazil: Key for identification, species richness and distribution

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    Mariana A. Cherman

    2013-09-01

    Full Text Available White grubs (Coleoptera, Melolonthidae in the "Planalto Region", Rio Grande do Sul state, Brazil: Key for identification, species richness and distribution. The objective of this study was to survey the occurrence and geographic distribution of white grub species (Coleoptera, Melolonthidae in cultivated and non-cultivated fields of the "Planalto Region", Rio Grande do Sul state, Brazil and develop a key at genus-level. Twenty-eight species from 15 genera and three subfamilies were recorded: Dynastinae, Melolonthinae and Rutelinae. The species or genera recorded for the first time in the state are: Cyclocephala metrica, C. tucumana, Isonychus albicinctus, Liogenys bidenticeps, L. fusca, L. obesa and L. sinuaticeps, Paranomala violacea, as well as unidentified species of Amononyx, Dicrania, Leucothyreus, Macrodactylus, Plectris and Rhizogeniates. Among the species recorded, 23 were associated with winter crops. Only Cyclocephala metrica, Dyscinetus rugifrons, two species of Leucothyreus and one species of the tribe Sericini were not present in cultivated crop fields. Cyclocephala flavipennis and Diloboderus abderus occurred in most of the municipalities sampled, often associated with Plectris sp., C. modesta and C. putrida. The highest richness of melolonthids was concentrated in the northeast of the Planalto region.

  7. The human papillomavirus infection in men study: human papillomavirus prevalence and type distribution among men residing in Brazil, Mexico, and the United States.

    Science.gov (United States)

    Giuliano, Anna R; Lazcano-Ponce, Eduardo; Villa, Luisa L; Flores, Roberto; Salmeron, Jorge; Lee, Ji-Hyun; Papenfuss, Mary R; Abrahamsen, Martha; Jolles, Emily; Nielson, Carrie M; Baggio, Maria Luisa; Silva, Roberto; Quiterio, Manuel

    2008-08-01

    Male sexual behavior influences the rates of cervical dysplasia and invasive cervical cancer, as well as male human papillomavirus (HPV) infection and disease. Unfortunately, little is known regarding male HPV type distribution by age and across countries. In samples combined from the coronal sulcus, glans penis, shaft, and scrotum of 1,160 men from Brazil, Mexico, and the United States, overall HPV prevalence was 65.2%, with 12.0% oncogenic types only, 20.7% nononcogenic types only, 17.8% both oncogenic and nononcogenic, and 14.7% unclassified infections. Multiple HPV types were detected in 25.7% of study participants. HPV prevalence was higher in Brazil (72.3%) than in the United States (61.3%) and Mexico (61.9%). HPV16 (6.5%), HPV51 (5.3%), and HPV59 (5.3%) were the most commonly detected oncogenic infections, and HPV84 (7.7%), HPV62 (7.3%), and HPV6 (6.6%) were the most commonly detected nononcogenic infections. Overall HPV prevalence was not associated with age. However, significant associations with age were observed when specific categories of HPV, nononcogenic, and unclassified HPV infections were considered. Studies of HPV type distribution among a broad age range of men from multiple countries is needed to fill the information gap internationally with respect to our knowledge of HPV infection in men.

  8. New Insights into the Geographic Distribution of Mycobacterium leprae SNP Genotypes Determined for Isolates from Leprosy Cases Diagnosed in Metropolitan France and French Territories.

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    Florence Reibel

    Full Text Available Between 20 and 30 bacteriologically confirmed cases of leprosy are diagnosed each year at the French National Reference Center for mycobacteria. Patients are mainly immigrants from various endemic countries or living in French overseas territories. We aimed at expanding data regarding the geographical distribution of the SNP genotypes of the M. leprae isolates from these patients.Skin biopsies were obtained from 71 leprosy patients diagnosed between January 2009 and December 2013. Data regarding age, sex and place of birth and residence were also collected. Diagnosis of leprosy was confirmed by microscopic detection of acid-fast bacilli and/or amplification by PCR of the M. leprae-specific RLEP region. Single nucleotide polymorphisms (SNP, present in the M. leprae genome at positions 14 676, 1 642 875 and 2 935 685, were determined with an efficiency of 94% (67/71. Almost all patients were from countries other than France where leprosy is still prevalent (n = 31 or from French overseas territories (n = 36 where leprosy is not totally eradicated, while only a minority (n = 4 was born in metropolitan France but have lived in other countries. SNP type 1 was predominant (n = 33, followed by type 3 (n = 17, type 4 (n = 11 and type 2 (n = 6. SNP types were concordant with those previously reported as prevalent in the patients' countries of birth. SNP types found in patients born in countries other than France (Comoros, Haiti, Benin, Congo, Sri Lanka and French overseas territories (French Polynesia, Mayotte and La Réunion not covered by previous work correlated well with geographical location and history of human settlements.The phylogenic analysis of M. leprae strains isolated in France strongly suggests that French leprosy cases are caused by SNP types that are (a concordant with the geographic origin or residence of the patients (non-French countries, French overseas territories, metropolitan France or (b more likely random in regions where

  9. Distribution and abundance of Cladocera (Branchiopoda in the Paraíba do Sul River estuary, Rio de Janeiro, Brazil

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    José Mauro Sterza

    2006-12-01

    Full Text Available To characterize the cladoceran community of the Paraíba do Sul River estuary, located in the district of São João da Barra, Rio de Janeiro, Brazil, cladocerans were collected monthly in nine sampling stations from September 2002 until August 2003. Samples were obtained by subsurface tows using a plankton net with a 30 cm opening mouth and 70 micron mesh size, fitted with a mechanical flowmeter. Environmental parameters such as salinity and temperature were also obtained. Seventeen species of Cladocera were identified: Pseudoevadne tergestina, Penilia avirostris, Macrothrix triserialis, Moina micrura, Simocephalus kerhervei, Simocephalus vetalus, Simocephalus latirostris, Simocephalus serrulatus, Alona rectangula, Alona quadrangularis, Bosmina longirostris, Bosminopsis deitersi, Camptocercus dadayi, Ceriodaphnia richardi, Diaphanosoma fluviatile, Kurzia latissima and Pleuroxus similis. The highest total abundance of Cladocera occurred in April in the marine zone of the estuary. The most abundant species during this period was Penilia avirostris. At the mixing and freshwater zones of the estuary, the most abundant species were Moina micrura, mainly in January; and Simocephalus vetalus and Bosmina longirostris during spring. From this scenario, it can be inferred that the cladoceran community of the Paraíba do Sul River estuary presents characteristics of marine, brackish and freshwater environments. Temperature and salinity seem to limit the occurrence and distribution of cladocerans in the estuary.O presente estudo teve como objetivo caracterizar a comunidade zooplanctônica de cladóceros no estuário do Rio Paraíba do Sul, localizado no município de São João da Barra, RJ. O zooplâncton foi coletado mensalmente de setembro/2002 a agosto/2003 em nove estações através de arrastos subsuperficiais com uma rede de plâncton com abertura de boca de 30 cm e malha de 70 mµ, dotada de fluxômetro mecânico. Foram medidas simultaneamente a

  10. [Genotypic identification and distribution patterns of Candida parapsilosis complex species (C.parapsilosis sensu stricto, C.metapsilosis and C.orthopsilosis) isolated from clinical samples].

    Science.gov (United States)

    Cebeci Güler, Nejla; Tosun, Ilknur; Bayramoğlu, Gülçin; Buruk, Kurtuluş; Aydın, Faruk

    2011-10-01

    knowledge in the clinical importance, isolation rates and geographical distribution of these species. Thus, genotypical identification of C.parapsilosis complex species will be the initial step for the arrangement of further studies in that area.

  11. Mendel: a simple excel workbook to compare the observed and expected distributions of genotypes/phenotypes in transgenic and knockout mouse crosses involving up to three unlinked loci by means of a χ2 test.

    Science.gov (United States)

    Montoliu, Lluís

    2012-06-01

    The analysis of transgenic and knockout mice always involves the establishment of matings with individuals carrying different loci, segregating independently, whose presence is expected among the progeny, according to a Mendelian distribution. The appearance of distorted inheritance ratios suggests the existence of unexpected lethal or sub-lethal phenotypes associated with some genotypes. These situations are common in a number of cases, including: testing transgenic founder mice for germ-line transmission of their transgenes; setting up heterozygous crosses to obtain homozygous individuals, both for transgenic and knockout mice; establishing matings between floxed mouse lines and suitable cre transgenic mouse lines, etc. The Pearson's χ(2) test can be used to assess the significance of the observed frequencies of genotypes/phenotypes in relation to the expected values, in order to determine whether the observed cases fit the expected distribution. Here, I describe a simple Excel workbook to compare the observed and expected distributions of genotypes/phenotypes in transgenic and knockout mouse crosses involving up to three unlinked loci by means of a χ(2) test. The file is freely available for download from my laboratory's web page at: http://www.cnb.csic.es/~montoliu/Mendel.xls .

  12. The spatial distribution of the subtidal benthic macrofauna and its relationship with environmental factors using geostatistical tools: a case study in Trapandé Bay, southern Brazil

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    Fernanda M. de Souza

    2013-02-01

    Full Text Available Modeling the distribution patterns of the estuarine macrobenthic community has revealed itself as a difficult task due to spatio-temporal heterogeneity. This study uses ordinary kriging and Poisson modeling to generate distribution maps of the subtidal benthic macrofauna in the Trapandé Bay (southeastern Brazil. Samples were taken in duplicate from 36 locations distributed along nine transects perpendicular to the main estuarine axis in October 2006 and March 2007. One-hundred and seventy taxa belonging to 12 phyla, were identified, with dominance of Annelida Polychaeta. Distribution maps were prepared to illustrate the total density, the number of species and the six most numerous taxa, as well as abiotic parameters. The general distribution pattern has revealed that the greatest number of species and the highest densities are at the estuary mouth, decreasing towards its inner areas. However the temporal and spatial changes observed at the estuary mouth have clearly shown the impact of environmental variations such as nutrients and freshwater input, attributed to increased rainfall in March. The increased flow in the Cananeia Sea, coming from the drainage basin, produces major changes in sediment and faunal composition. Ordinary kriging associated with Poisson modeling has proved to be a powerful and promising tool for modeling the macrofauna, despite the fact that it is not frequently used due to the scarcity of appropriate software.

  13. Exploring the diversity and distribution of neotropical avian malaria parasites--a molecular survey from Southeast Brazil.

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    Gustavo A Lacorte

    Full Text Available Southeast Brazil is a neotropical region composed of a mosaic of different tropical habitats and mountain chains, which allowed for the formation of bird-rich communities with distinct ecological niches. Although this region has the potential to harbor a remarkable variety of avian parasites, there is a lack of information about the diversity of malarial parasites. We used molecular approaches to characterize the lineage diversity of Plasmodium and Haemoproteus in bird communities from three different habitats in southeast Brazil based on the prevalence, richness and composition of lineages. We observed an overall prevalence of 35.3%, with a local prevalence ranging from 17.2% to 54.8%. Moreover, no significant association between prevalence and habitat type could be verified (p>0.05. We identified 89 Plasmodium and 22 Haemoproteus lineages, with 86% of them described for the first time here, including an unusual infection of a non-columbiform host by a Haemoproteus (Haemoproteus parasite. The composition analyses of the parasite communities showed that the lineage composition from Brazilian savannah and tropical dry forest was similar, but it was different from the lineage composition of Atlantic rainforest, reflecting the greater likeness of the former habitats with respect to seasonality and forest density. No significant effects of habitat type on lineage richness were observed based on GLM analyses. We also found that sites whose samples had a greater diversity of bird species showed a greater diversity of parasite lineages, providing evidence that areas with high bird richness also have high parasite richness. Our findings point to the importance of the neotropical region (southeast Brazil as a major reservoir of new haemosporidian lineages.

  14. Characterization of rotavirus P genotypes circulating among paediatric inpatients in Northern Brazil Caracterização de genótipos P de rotavírus circulantes entre pacientes pediátricos hospitalizados no norte do Brasil

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    Joana D’Arc P. MASCARENHAS

    1999-05-01

    Full Text Available Between November 1992 and August 1993, twenty-eight rotavirus-positive stool samples obtained from paediatric inpatients in Belém, Brazil, aged less than four years, were tested by RT-PCR to determine the P genotype specificities. With the exception of 7 non-diarrhoeic children, all patients were either diarrhoeic at admission or developed diarrhoea while in hospital. Rotavirus strains with the gene 4 alleles corresponding to P1B[4] and P1A[8] types (both of which bearing G2 specificity predominated, accounting for 78.6% of the strains. While only one P2A[6] type strain - with (mixed G1 and 4 type specificities - was detected, the gene 4 allele could not be identified in 4 (14.3% of the strains. Most (81% of the specimens were obtained from children during their first 18 months of life. Rotavirus strains bearing single P1B[4] type-specificity were identified in both diarrhoeic (either nosocomial, 28.6% or community-acquired diarrhoea, 28.6% and non-diarrhoeic (42.8% children. P1A[8] gene 4 allele, on the other hand, was detected only among diarrhoeic children, at rates of 57.1% and 42.9% for nosocomial- and- community acquired diarrhoea, respectively. Mixed P1A[8],1B[4] type infection was identified in only one case of community-acquired diarrhoea.De novembro de 1992 a agosto de 1993, 28 amostras fecais positivas para rotavírus, obtidas de pacientes pediátricos hospitalizados em Belém, Brasil, com idades inferiores a 4 anos, foram testadas por RT-PCR visando à determinação dos genótipos P. Com exceção de 7 crianças não diarréicas, todos os pacientes apresentavam diarréia à admissão ou a desenvolviam enquanto internados no hospital. Cepas de rotavírus com especificidades antigênicas P correspondentes aos genótipos P1B[4] e P1A[8] (ambos pertencentes ao tipo G2 predominaram, representando 78,6% das amostras. Enquanto apenas uma cepa classificada como P2A[6] - com dupla especifidade antigênica (1 e 4 para o tipo G - foi

  15. Avaliação de genótipos de bananeira em Botucatu-SP Evaluation of banana genotypes in Botucatu, state of São Paulo, Brazil

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    Dayana Portes Ramos

    2009-12-01

    Full Text Available O objetivo do trabalho foi avaliar o crescimento e a produção de genótipos de 3 grupos genômicos de bananeira: 'Nanicão-IAC-2001', 'Grande Naine', 'Caipira' e 'Nam' (AAA; 'maçã', 'Thap maeo', 'Prata-Anã' e 'Prata-Zulu' (AAB; 'FHIA 01', 'FHIA 18', 'Prata-Graúda' e 'maçã Tropical' (AAAB, em Botucatu-SP. Foram avaliadas as seguintes características de crescimento: altura de plantas, circunferência do pseudocaule, número de folhas, número de dias entre o plantio e o florescimento, entre o florescimento e a colheita e do plantio à colheita. As características de produção avaliadas foram: peso do cacho, número de pencas, número de frutos, peso médio dos frutos, produtividade; peso, número, comprimento e diâmetro de frutos da 2ª penca. os resultados mostraram que, no grupo AAA, 'Nanicão' apresentou boas características de crescimento e produção, no entanto 'Grande Naine' apresentou maiores valores produtivos. 'Nam' apresentou menor porte e ciclo, porém baixos valores produtivos. No grupo AAB, 'Prata-Zulu' apresentou maior circunferência do pseudocaule, boas características produtivas, porém ciclo longo e porte maior. 'Thap maeo' destacou-se por apresentar boas características de produção. 'Prata-Anã' apresentou porte reduzido, menor ciclo, porém não apresentou bom desempenho produtivo. 'FHIA 01', no grupo AAAB, apresentou maiores valores na maioria das características avaliadas. Pode concluir-se que 'Grande Naine' se destacou no grupo AAA, 'Thap maeo' no grupo AAB e 'FHIA 01' no grupo AAAB.The purpose of this research was to assess the plants growth and production of genotypes of 4 genomic groups of banana: 'Nanicão-iAC-2001', 'Grande Naine', 'Caipira' and 'Nam' (AAA; 'maçã', 'Thap maeo', 'PrataAnã'and 'Prata Zulu'(AAB; 'FHIA01', 'FHIA18', 'Prata Graúda'and 'maçã Tropical' (AAAB, in Botucatu, state of São Paulo, Brazil. Some growth characteristics were evaluated such as: plant height, the pseudostem

  16. Hepatitis C virus genotypes in Pakistan: a systemic review

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    Ali Ijaz

    2011-09-01

    Full Text Available Abstract Background and aim Phylogenetic analysis has led to the classification of hepatitis C virus (HCV into 1-6 major genotypes. HCV genotypes have different biological properties, clinical outcome and response to antiviral treatment and provide important clues for studying the epidemiology, transmission and pathogenesis. This article deepens the current molecular information about the geographical distribution of HCV genotypes and subgenotypes in population of four provinces of Pakistan. 34 published papers (1996-2011 related to prevalence of HCV genotypes/serotypes and subgenotypes in Pakistan were searched. Result HCV genotype/s distribution from all 34 studies was observed in 28,400 HCV infected individuals in the following pattern: 1,999 (7.03% cases of genotype 1; 1,085 (3.81% cases of genotype 2; 22,429 (78.96% cases of genotype 3; 453 (1.59% cases of genotype 4; 29 (0.10% cases of genotype 5; 37 (0.13% cases of genotype 6; 1,429 (5.03% cases of mixed genotypes, and 939 (3.30% cases of untypeable genotypes. Overall, genotype 3a was the predominant genotype with a rate of 55.10%, followed by genotype 1a, 3b and mixed genotype with a rate of 10.25%, 8.20%, and 5.08%, respectively; and genotypes 4, 5 and 6 were rare. Genotype 3 occurred predominately in all the provinces of Pakistan. Second more frequently genotype was genotype 1 in Punjab province and untypeable genotypes in Sindh, Khyber Pakhtunkhwa and Balochistan provinces.

  17. Spatial distribution and risk factors for Toxoplasma gondii seropositivity in cattle slaughtered for human consumption in Rondônia, North region, Brazil.

    Science.gov (United States)

    de Souza, Juliana Bianca Rocha; Soares, Vando Edésio; Maia, Maerle Oliveira; Pereira, Cleidiane Magalhães; Ferraudo, Antônio Sergio; Cruz, Breno Cayeiro; Pires Teixeira, Weslen Fabrício; Felippelli, Gustavo; Maciel, Willian Giquelin; Gonçalves, Walter Antonio; da Costa, Alvimar José; Zanetti Lopes, Welber Daniel

    2016-08-15

    The present study aimed to evaluate Toxoplasma gondii seroprevalence in cattle slaughtered for human consumption from rural properties in the state of Rondônia, North region, Brazil; the seroprevalence was determined using indirect immunofluorescence assays (IFATs). Additionally, spatial distribution and risk factors associated with toxoplasmosis were also analyzed. Of the 1000 cattle serum samples examined, 53 (5.3%) were determined to be seropositive for T. gondii with antibody titers (IgG) ≥64. In regard to results of the studied risk factors (presence of cats, cats with free access to cattle, breeding system, animal's gender, consumption of raw milk by humans on the property and cattle abortion in the last 12 months) and the odds ratio (OR) of each of these factors influencing cattle to acquire toxoplasmosis, only animals raised on a feeder/stocker/backgrounder system presented a higher probability of being seropositive for T. gondii (OR≥1, P=0.04) than cattle raised only in a feeder/stocker system. There was no association between the occurrence of reproductive problems and T. gondii seropositivity. Based on results obtained in the Brazilian state of Rondônia, it could be concluded that the presence of cats and their contact with cattle on each property, cattle breeding purpose and cattle abortion in the last 12 months were not considered risk factors for T. gondii infection in cattle. Considering that the presence of T. gondii was detected in animals slaughtered in the state of Rondônia, consuming raw or undercooked meat from seropositive cattle should be considered a route of transmission of T. gondii to humans. However, the prevalence of toxoplasmosis diagnosed in cattle from this state (5.30%) is lower than the prevalence of toxoplasmosis observed in South, Southeast and Center-West regions of Brazil, which may vary between 48.5% and 71.0%. The low prevalence of toxoplasmosis in cattle is highlighted in Rondônia, which is the sixth largest state

  18. Distribution and Properties of Aerosol and Gas Phase Constituents within Biomass Burning Regional Haze in Brazil, 2012, during the Sambba (South American Biomass Burning Analysis) Field Campaign

    Science.gov (United States)

    Darbyshire, E.; Morgan, W.; Allan, J. D.; Flynn, M.; Liu, D.; O'Shea, S.; Trembath, J.; Szpek, K.; Langridge, J.; Brooke, J.; Ferreira De Brito, J.; Johnson, B. T.; Haywood, J.; Longo, K.; Artaxo, P.; Coe, H.

    2014-12-01

    Biomass Burning (BB) aerosols (BBA) impact upon weather, climate, ecosystems and human health at global and regional scales. Yet quantitative evaluation is impeded by a limited understanding of BB processes and a dearth of in-situ measurements. Thus large model uncertainties prevail, especially in data poor, intensive BB regions such as Brazil. Hence the timely nature of the SAMBBA campaign, utilizing aircraft (UK Facility for Airborne Atmospheric Measurement BAe-146) and ground based observations out of Porto Velho in Sept-Oct 2012. This work utilizes aircraft measurements to characterize BB regional haze - the inhomogeneous accumulation of aged BBA capped within the boundary layer, present across swathes of Brazil. As context, aerosol optical depth (AOD) and meteorological climatologies are presented and compared to the synoptic conditions of 2012. Throughout the early flights an expansive area of elevated (>1) AOD persisted, although in transitioning toward the wet season, rain out and advection significantly reduced its spatial extent and magnitude in western regions of Brazil. Concurrent decreases in haze BBA concentrations (~50%) were observed from the aircraft measurements sampling in these deforested/forested areas. However, the relative vertical structure, composition, physical and optical properties remained similar. The lofted maxima in aerosol concentrations at ~1.5km, typically not captured in models, is potentially important for regional climate. Significant differences were observed, however, during flights over the eastern savannah-like regions of Brazil, which remained drier throughout. Here, haze BBA concentrations resembled those in the west prior to wash out, with the exception of high loadings of refractive black carbon. This acted to lower the single scattering albedo and alter the number size distribution. The observed haze BBA west-east split is also present at source and remains similar throughout fresh plume evolution, thus we conclude

  19. Distribution of HCV genotype and single nucleotide polymorphisms (SNPs of IL-28B gene in HIV/HCV-coinfected Thai populations

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    A Avihingsanon

    2012-11-01

    Full Text Available Introduction: Hepatitis C virus (HCV infection remains a major silent killer, worldwide, particularly in resource poor settings where treatment of hepatitis C is mainly impossible. Pegylated interferon-α (PEG-IFN plus ribavirin (RBV are the recommended treatment for patients with chronic hepatitis C genotype 2/3. Recent study revealed that treatment responses against HCV infection by PEG-IFN and RBV are significantly associated with the single nucleotide polymorphisms (SNPs of interleukin-28B (IL-28B gene. There is limited data about the HCV genotype and SNPs of IL-28B in HIV-infected Thai population. Therefore, we aimed to investigate HCV genotype and the SNP patterns of the IL-28B gene in our HIV/HCV coinfection. Methods: Quantification of HCV RNA was done by a real-time polymerase chain reaction assay (Abbott with lower limit of detection of <12 copies/ml. HCV RNA-positive samples based on reverse transcriptase-polymerase chain reaction (RT-PCR of the 5'UTR were amplified with primer specific for the core and NS5B regions. Nucleotide sequences of both regions were analyzed for the genotype by phylogenetic analysis. DNA sample was extracted from PBMCs or sera. Then SNPs within IL-28B gene were detected by TaqMan real-time PCR (rs8099917 and rs12979860. The data were analyzed by allelic discrimination (AD software on the ABI-7900HT. Results: Totally 60 HIV/HCV-coinfected patients were studied. Median HCV RNA were 5.8 log10 copies/mL, 70% of them had HCV RNA >100,000 copies/mL. After sequencing, the phylogenetic analyses in this study showed that genotype 3 was the most prevalent in this population (56%; following by genotype 1 (30% and 6 (13%. Approximately 4% of them had infected for both genotypes 1 and 3. For IL-28B at rs8099917 and rs12979860 position, 95% of them were major allele (T/T or C/C and 5% were heterozygous (T/G or C/T. Conclusions: HCV genotype 3 is the most prevalent in our HIV/HCV coinfection. 95% of our patients have

  20. Aging, Alzheimer’s, and APOE genotype influence the expression and neuronal distribution patterns of microtubule motor protein dynactin-P50

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    Orwa eAboud

    2015-03-01

    Full Text Available Reports from neural cell cultures and experimental animal studies provide evidence of age- and disease-related changes in retrograde transport of spent or misfolded proteins destined for degradation or recycling. However, few studies address these issues in human brain from those who either age without dementia and overt neuropathology, or succumb to Alzheimer’s; especially as such propensity may be influenced by APOE genotype. We studied the expression and distribution of the dynein subunit dynactin-P50, the β amyloid precursor protein (βAPP, and hyperphosphorylated tau (P-tau in tissues and tissue sections of brains from non-demented, neuropathology-free patients and from Alzheimer patients, with either APOE ε3,3 or APOE ε4,4. We found that advanced age in patients without dementia or neuropathological change was associated with coordinated increases in dynactin-P50 and βAPP in neurons in pyramidal layers of the hippocampus. In contrast, in Alzheimer’s, βAPP and dynactin were significantly reduced. Furthermore, the dynactin-P50 and βAPP that was present was located primarily in dystrophic neurites in Aβ plaques. Tissues from Alzheimer patients with APOE ε3,3 had less P-tau, more βAPP, dynactin-P50, and synaptophysin than did tissues from Alzheimer patients carrying APOE ε4,4. It is logical to conclude, then, that as neurons age successfully, there is coordination between retrograde delivery and maintenance and repair, as well as between retrograde delivery and degradation and/or recycling of spent proteins. The buildup of proteins slated for repair, synaptic viability, transport, and re-cycling in neuron soma and dystrophic neurites suggest a loss of this coordination in Alzheimer neurons. Inheritance of APOE ε3,3 rather than APOE ε4,4, is associated with neuronal resilience, suggestive of better repair capabilities, more synapses, more efficient transport, and less hyperphosphorylation of tau. We conclude that even in disease

  1. Distribution of natural resistance to NS3 protease inhibitors in hepatitis C genotype 1a separated into clades 1 and 2 and in genotype 1b of HIV-infected patients.

    Science.gov (United States)

    Bagaglio, S; Uberti-Foppa, C; Messina, E; Merli, M; Hasson, H; Andolina, A; Galli, A; Lazzarin, A; Morsica, G

    2016-04-01

    Naturally occurring resistance-associated variants (RAVs) within the protease domain of hepatitis C virus (HCV) genotype (G) 1a separated into clades 1 and 2, and G1b were investigated in 59 HIV/HCV coinfected patients. RAVs were detected in 10/23 G1a/clade 1 and 1/19 G1b (p 0.0059). A similar frequency of RAVs was found when comparing G1a/clade 2 and G1b (p 0.1672). A cross-resistance to the macrocyclic compounds simeprevir and paritaprevir was detected in two G1a/clade 2 and 1 G1b sequences and none of G1a/clade 1 sequences. The simultaneous characterization of subtype and natural RAVs by population analysis of the NS3 domain by may add important information for anti-HCV treatment strategies including protease inhibitors.

  2. Predicting the geographic distribution of Lutzomyia longipalpis (Diptera: Psychodidae and visceral leishmaniasis in the state of Mato Grosso do Sul, Brazil

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    Paulo Silva de Almeida

    2013-12-01

    Full Text Available To understand the geographic distribution of visceral leishmaniasis (VL in the state of Mato Grosso do Sul (MS, Brazil, both the climatic niches of Lutzomyia longipalpis and VL cases were analysed. Distributional data were obtained from 55 of the 79 counties of MS between 2003-2012. Ecological niche models (ENM of Lu. longipalpis and VL cases were produced using the maximum entropy algorithm based on eight climatic variables. Lu. longipalpis showed a wide distribution in MS. The highest climatic suitability for Lu. longipalpis was observed in southern MS. Temperature seasonality and annual mean precipitation were the variables that most influenced these models. Two areas of high climatic suitability for the occurrence of VL cases were predicted: one near Aquidauana and another encompassing several municipalities in the southeast region of MS. As expected, a large overlap between the models for Lu. longipalpis and VL cases was detected. Northern and northwestern areas of MS were suitable for the occurrence of cases, but did not show high climatic suitability for Lu. longipalpis . ENM of vectors and human cases provided a greater understanding of the geographic distribution of VL in MS, which can be applied to the development of future surveillance strategies.

  3. Predicting the geographic distribution of Lutzomyia longipalpis (Diptera: Psychodidae) and visceral leishmaniasis in the state of Mato Grosso do Sul, Brazil.

    Science.gov (United States)

    Almeida, Paulo Silva de; Sciamarelli, Alan; Batista, Paulo Mira; Ferreira, Ademar Dimas; Nascimento, João; Raizer, Josué; Andrade Filho, José Dilermando; Gurgel-Gonçalves, Rodrigo

    2013-12-01

    To understand the geographic distribution of visceral leishmaniasis (VL) in the state of Mato Grosso do Sul (MS), Brazil, both the climatic niches of Lutzomyia longipalpis and VL cases were analysed. Distributional data were obtained from 55 of the 79 counties of MS between 2003-2012. Ecological niche models (ENM) of Lu. longipalpis and VL cases were produced using the maximum entropy algorithm based on eight climatic variables. Lu. longipalpis showed a wide distribution in MS. The highest climatic suitability for Lu. longipalpis was observed in southern MS. Temperature seasonality and annual mean precipitation were the variables that most influenced these models. Two areas of high climatic suitability for the occurrence of VL cases were predicted: one near Aquidauana and another encompassing several municipalities in the southeast region of MS. As expected, a large overlap between the models for Lu. longipalpis and VL cases was detected. Northern and northwestern areas of MS were suitable for the occurrence of cases, but did not show high climatic suitability for Lu. longipalpis. ENM of vectors and human cases provided a greater understanding of the geographic distribution of VL in MS, which can be applied to the development of future surveillance strategies.

  4. Estrutura genética espacial de duas populações naturais de Myracrodruon urundeuva M. Allemão na região semi-árida, Brasil Spacial genotype structure of two natural populations of Myracrodruon urundeuva M. Allemão in a semi-arid region of Brazil

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    Cristina Maria Batista de Lacerda

    2003-04-01

    Full Text Available Para determinar se a distribuição espacial dos genótipos é aleatória ou se está estruturada, utilizou-se a autocorrelação espacial dos genótipos para investigar dados alozímicos de duas populações naturais de Myracrodruon urundeuva do semi-árido brasileiro (Estação Ecológica do Seridó/RN, com 1.166,38/ha e Sítio Mata dos Alves/PB com 84/ha. A primeira população encontra-se em áreas mais preservadas, enquanto a segunda está em uma área fragmentada. O programa utilizado foi o "Autocorr". A autocorrelação estimada para os locos polimórficos foi realizada nos indivíduos adultos. Foram analisados dois alelos na Estação Ecológica do Seridó e quatro no Sítio Mata dos Alves. Utilizaram-se de três métodos para o pareamento de indivíduos a serem comparados: conexão de Gabriel (Ig, vizinho mais próximo (Ivmp e comparações dentro de classes de distâncias preestabelecidas. Os resultados obtidos para Ig e Ivmp (Pgm-2: 0,032 e 0,236; Est-1: 0,263 e 0,242, respectivamente na estação ecológica e Ig e Ivmp (Pgm-1: -0,349 e -0,288; Pgm-2: -0,341 e-0,278; Est-1: -0,349 e -0,284 e Mdh-1: -0,345 e 0,282, respectivamente no sítio não mostraram a presença de estruturação genética espacial, o que possibilita pressupor que exista uma distribuição aleatória dos genótipos dentro delas. O mesmo foi detectado para as comparações dentro de classes de distâncias preestabelecidas. Os resultados mantiveram o mesmo padrão encontrado para algumas populações naturais de espécies arbóreas tropicais já estudadas.To determine whether genotype spacial distribution is random or structured, spacial genotypic autocorrelation was used to compare two natural populations of Myracrodruon urundeuva in the semi-arid region of Northeastern Brazil (Estação Ecológica do Seridó/RN - 1166,38/ha and Sítio Mata dos Alves/PB - 84/ha. The former is characteristic of preserved areas, while the latter is found in areas with marked

  5. An analysis of the spatiotemporal distribution of American cutaneous leishmaniasis in counties located along road and railway corridors in the State of Maranhao, Brazil

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    Vicente Silva Goncalves Neto

    2013-06-01

    Full Text Available Introduction The incidence of American cutaneous leishmaniasis (ACL is increasing in Latin America, especially in Brazil, where 256,587 cases were confirmed in the last decade. Methods This study used a Bayesian model to examine the spatial and temporal distribution of ACL cases between 2000 and 2009 in 61 counties of State of Maranhão located along the three main road and railway corridors. Results During the study period, 13,818 cases of ACL were recorded. There was a significant decrease in the incidence of ACL in the ten study years. The recorded incidence rate ranged from 7.36 to 241.45 per 100,000 inhabitants. The relative risk increased in 77% of the counties, decreased in 18% and was maintained in only five counties. Conclusions Although there was a decreased incidence of the disease, ACL was present in all of the examined municipalities, thus maintaining the risk of contracting this illness.

  6. Hepatitis C Virus Genotypes

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    Kayhan Azadmanesh

    2005-09-01

    , based on its phenotype according to its disease pattern or cytopathology, and serotype based on a panel of cross-neutralization antibodies, impossible(21. Phylogenetic analysis may aid in the separation of sequences into distinct types(22. So far six majorgenotypes (HCV-1 to HCV-6 have been described, each containing multiple subtypes (e.g., 1a, 1b, etc.. More than 50 subtypes have been reported todate and are normally identified on the bases of partial gene sequences from E1 and NS5B. The isolates formerly published as genotypes 7 to 11 are now considered subtypes within genotypes 3 (subtype 10 and 6 (subtypes 7, 8, 9, and 11(22.In general, sequence characteristics of a particular subtype are found throughout the HCV genome. Thus, the HCV genotype has been determined primarily based on analysis of partial genome sequences. The most extensive database exists for the 5'-UTR, core, E1, and NS5B (23-28. Whereas the 5'-UTR is highly conserved and therefore preferred for diagnosis, the core, the envelope, and the NS5B regions are less conserved and therefore highly discriminative and preferred for subtyping. Although the 5'-UTR contains characteristic sequence motifs of some genotypes, analysis of this region may not accurately predict all genotypes or subtypes. HCV Genotyping MethodsMolecular Genotyping Because differences in geographical distribution, disease outcome, and response to therapy among HCV genotypes have been suggested, reliable 1 573 1149 2187 3078 4971 5916 9033C E1 E2 P7 NS2 NS3 NS4A NS4B NS5A NS5B Figure 1. The HCV genome contains a single open reading frame (ORF. The genes for structural proteins (C, E1, E2, P7 are situated towards the N-terminus of the ORF. Genes coding for proteins necessary for viral replication are found towards the C-terminus of the ORF. methods for determining the HCV genotype may become an important clinical test. The HCV genotype can be determined by nucleotide sequencing of a specific PCR-amplified portion of the HCV genome

  7. SPACIAL DISTRIBUTION AND ASSOCIATION BETWEEN INFANT MORTALITY AND LOW BIRTH WEIGHT WITH SOCIOECONOMIC FACTORS AND HEALTH SERVICES IN THE SOUTHERN REGION OF BRAZIL.

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    Antonio Fernando Boing, Fernando Kel e Alexandra Crispim Boing

    2006-12-01

    Full Text Available This research aimed to realize the spacial distribution of the infant mortality rates and of the proportion of low weight newborns in the southern area of Brazil and to test the association of those indicators with socioeconomic factors and health services. It is an ecological study put together from data collected from the 1,159 municipalities comprising the southern area of Brazil in the year 2000. The independent variables were the Municipal Human Development Rate, the illiteracy rate, the Gini coefficient, the proportion of poor people and people in homes with indoor plumbing and bathrooms, the annual average of medical visits for basic medical specialties, the monthly average of home visits per family and the number of medical clinics per 10,000 inhabitants. Kolmogorov-Smirnov, ANOVA and Kruskall-Wallis tests were performed and the Spearman coefficient of correlation was calculated. A significant statistical association was established between infant mortality and all the socioeconomic indicators. As for the proportion of low birth weight, it was associated with the proportion of people in homes with indoor plumbing and bathrooms, the annual average of medical visits for basic medical specialties, the Gini coefficient, poverty levels and monthly average of home visits per family. The spacial distribution of the diseases investigated allowed the identification of areas with the worst indicators investigated and which need greater government investment and attention. The public policies in infant health care should consider the need to improve the socioeconomic conditions and accessible health services in order to reduce the inequalities in health and the magnitude of the disease.

  8. Seis novas larvas do gênero Micrathyria Kirby e notas sobre a distribuição no Brasil (Odonata, Libellulidae Six new larvae of genus Micrathyria Kirby and notes on distribution in Brazil. (Odonata, Libellulidae

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    Cristiane Vieira de Assis

    1994-01-01

    Full Text Available Six new Micrathyria Kirby, 1889 larvae from Brazil are described and compared to those described by SANTOS (1968, 1972, 1978 and NEEDHAM (1943. The distribution of the species is studied based on material deposited in colection of Museu Nacional, Universidade Federal do Rio de Janeiro (MN-UFRJ.

  9. Diesel oil safety stock in storage and distribution terminals: a case study: Porto Velho/Rio, Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Freitas, Rubens C. [Agencia Nacional do Petroleo, Gas Natural e Biocombustiveis (ANP), Rio de Janeiro, RJ (Brazil); D' agosto, Marcio A. [Coordenacao dos Programas de Pos-Graduacao de Engenharia (COPPE/UFRJ), RJ (Brazil)

    2012-07-01

    This paper presents a methodology for calculating diesel oil safety stock in distributor terminals located in the northern of Brazil, applied on a case study for terminals in the state of Rondonia. From the mapping of logistic flows related to transport and storage of diesel oil, the risk factors that cause uncertainties in lead time were analyzed and quantified. Through a research conducted among economic agents (producers, distributors and carriers) operating in the region, it was measured the relevance and impact of risk factors on the safety stock in the terminals. The safety stock was calculated by the classical equation of inventories, as well as by the methodology proposed in this paper. The difference between the two methods has unveiled inefficiencies derived from uncertainties in lead time. Recommendations of actions to mitigate the risk factors are included at the end of this paper. (author)

  10. Distribution of human immunodeficiency virus type 1 subtypes in the State of Amazonas, Brazil, and subtype C identification

    Energy Technology Data Exchange (ETDEWEB)

    Cunha, L.K.H. [Departamento de Parasitologia, Universidade Federal do Amazonas, Manaus, AM (Brazil); Kashima, S.; Amarante, M.F.C.; Haddad, R.; Rodrigues, E.S. [Laboratório de Biologia Molecular, Hemocentro de Ribeirão Preto, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP (Brazil); Silva, K.L.T.; Lima, T.A.; Castro, D.B.; Brito, F.C.; Almeida, E.G. [Diretoria de Ensino e Pesquisa,Fundação de Hematologia e Hemoterapia do Amazonas, Manaus, AM (Brazil); Covas, D.T. [Laboratório de Biologia Molecular, Hemocentro de Ribeirão Preto, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP (Brazil); Malheiro, A. [Departamento de Parasitologia, Universidade Federal do Amazonas, Manaus, AM (Brazil); Diretoria de Ensino e Pesquisa,Fundação de Hematologia e Hemoterapia do Amazonas, Manaus, AM (Brazil)

    2012-01-20

    Few studies have reported the molecular epidemiological characterization of HIV-1 in the Northern region of Brazil. The present study reports the molecular and epidemiological characterization of 31 HIV-1 isolates from blood donors from the State of Amazonas who donated blood between April 2006 and March 2007. Serum/plasma samples from all donors were screened for HIV antibodies by ELISA and the results confirmed by Western blot analysis. Genomic DNA was extracted from the buffy coat using the Super Quik-Gene-DNA Isolation kit. Nested PCR was performed on the env, gag, and pol regions of HIV-1 using the Gene Amp PCR System 9700. Sequencing reactions were performed using the inner PCR primers and the DYEnamic™ ET Dye Terminator Kit, and phylogenetic analysis was performed using the gag, pol, and env gene sequences. We collected samples from 31 blood donors who tested positive for HIV-1 in confirmatory experiments. The male:female ratio of blood donors was 3.4:1, and the mean age was 32.4 years (range: 19 to 61 years). Phylogenetic analysis showed that subtype B is the most prevalent among Northern Brazilian HIV-1-seropositive blood donors. One HIV-1 subtype C and one circulating recombinant form (CRF-BF) of HIV-1 were identified in the State of Amazonas. This is the first study showing the occurrence of a possible “homogenous” subtype C in this region of Brazil. This finding could contribute to a better characterization of the HIV-1 strains that circulate in the country. Key words: HIV-1; Subtypes; Phylogenetic analysis; Blood donors; Molecular and epidemiological characterization.

  11. POPULATION STRUCTURE AND SPATIAL DISTRIBUTION OF Bauhinia cheilantha (Bong. Steud. IN TWO FRAGMENTS AT DIFFERENT REGENERATION STAGES IN THE CAATINGA, IN SERGIPE, BRAZIL

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    Ana Cecília da Cruz Silva

    2015-06-01

    Full Text Available ABSTRACTThis study aimed to analyze the vertical and diameter structure and the spatial distribution pattern of Bauhinia cheilantha in two Caatinga fragments in Sergipe, Brazil, at different regeneration stages. Thirty plots were demarcated in area I (Canindé de São Francisco and Poço Redondo, which has vegetation regeneration, and 25 plots in area II (Porto da Folha with preserved vegetation, both having 400 m2. All B. cheilanthaindividuals had their height and circumference (circumference at breast height > 6 cm measured. Possible differences in height and diameter at breast height were tested in the two populations by using Student’s T-test. The distribution pattern of species was calculated through Payandeh’s index. We sampled 154 B. cheilantha individuals, equivalent to 33.3% of the plots in area I and in 1,027 individuals in area II, totaling 100% frequency. Height and the diameter of the two populations were statistically different, where AI achieved all values lower than AII. The spatial distribution pattern of B. cheilantha found in both areas was aggregate, with values of 11.85 and 9.00, respectively. Thus, it became clear that the population in AII is at a more advanced successional status than AI, due to its longer conservation time.

  12. Epidemic Distribution Characteristics of Wild-type Measles Viruses Genotypes in Yunnan Province%云南省麻疹野病毒不同基因型的流行分布状况

    Institute of Scientific and Technical Information of China (English)

    李立群; 庞颜坤; 王慧玲; 张杰; 彭敏; 余文; 罗梅; 丁峥嵘

    2012-01-01

    Objective To know the epidemic and distribution of wild-type measles viruses genotypes in Yunnan province. Methods Measles viruses were isolated from the specimens, which collected from measles outbreaks and sporadic patients by B95, cell[Epstein-Barr(EB)Virus-Transformed,Marmoset B Lymphoblastoid Cell Line]and Vero/SLAM cell[Vero Cell Transfected to Express the Human Signaling Lymphocyte Activation Molecule (SLAM ) ]. Fragment of 676 nucleotide acids of the carboxyl end of nucleoprotein gene were amplified by reverse transcription-polymerase chain reaction (RT-PCR) and then the PCR products were directly sequenced and analyzed. Besides, phylogenetic tree was constructed based on 450 nucleotide acids of the carboxyl end of nucleoprotein gene, and homological analysis was performed. Results 46 wild-type measles viruses and 2 nucleotide acids were isolated in Yunnan province from 2004 to 2011. 43 strains were identified as H, genotype, distributed in 14 counties and Puge county, Sichuan province. 4 strains were identified as dn genotype, distributed in Menglian county, Yunnan province and Bankang county, Myanmar. 1 strain was identified as A genotype, from Longling county. Conclusion H, genotype was predominant genotype of wild measles viruses circulated in Yunnan province. dn genotype currently has circulated in the border areas after imported from Myanmar. A genotype was the same with Chinese measles vaccine strain of Shanghai191.%目的 了解云南省麻疹野病毒不同基因型的流行分布状况.方法 用B95a细胞[Epstein-Barr( EB) Virus-Transformed,Marmoset B Lymphoblastoid Cell Line;埃泼斯坦-巴尔病毒转化的绒猴淋巴母细胞]和Vero/SLAM细胞[ Vero Cell Transfected to Express the Human Signaling Lymphocyte Activation Molecule (SLAM),淋巴信号激活因子转染的非洲绿猴肾细胞]从麻疹爆发和散发患者的标本中分离麻疹野病毒,用逆转录-聚合酶链反应扩增核蛋白(Nucleoprotein,N)基因羧基末端的676

  13. Selection of Cactus Pear Forage (Opuntia spp. and (Nopalea spp. Genotypes resistant to the Carmine Cochineal (Dactylopius opuntiae cockerell, 1929 in the State of Paraíba, Brazil

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    Edson Batista Lopes

    2010-04-01

    Full Text Available Since 2001, the giant cactus pear (O. ficus-indica has been decimated by carmine cochineal (Dactylopius opuntiae Cockerell, 1929, considered a potentially devastating pest. The objective of this research was to select genotypes resistant of cactus pear to the carmine cochineal. The experiment was conducted at the Laboratory of Plant Protection of Lagoa Seca Experimental Station owned by the Agricultural Research Corporation of Paraiba-EMEPA-PB, during the months of February to July 2009. We evaluated 22 genotypes of cactus pear (Opuntia spp. and Nopalea spp.. Of each genotype were selected five cladodes, standardized in relation to the physiological state (age of the cladodes. They were divided into four quadrants, where one in every five of them were applied “toothpicks” infested with the insect colonies, a total of 20 colonies/cladodes. Weekly cladodes of the infested genotypes were inspected to evaluate the growth of old colonies and the emergence of new colonies. This procedure took 60 days. The results showed that the genotypes Palma ornamental (Opuntia stricta,, X-Italiana, Palma Gigante, F5, F8, F11, V12, IPA-Clone 20, Orelha-de-onça (Opuntia sp., Redonda, Branco São Pedro, Formosa, Lingua-de-vaca and Gigantona are susceptible to the carmine cochineal. Already the genotypes Baiana or Alagoana, Palma Doce or Miúda Orelha-de-elefante-africana, Orelha-de-elefante-mexicana, Orelha-de-onça (Nopalea sp. and Palma Azul are resistant to the carmine cochineal.

  14. Levels and spatial distribution of trace elements in macroalgae species from the Todos os Santos Bay, Bahia, Brazil.

    Science.gov (United States)

    Brito, Geysa B; de Souza, Thaís L; Bressy, Fernanda C; Moura, Carlos W N; Korn, Maria Graças A

    2012-10-01

    Concentrations of elements (As, Ba, Cd, Co, Cr, Cu, Li, Mn, Ni, Pb, V, and Zn) were determined in ten species of macroalgae collected from six sites in the Todos os Santos Bay, Brazil, between May and July of 2010. An optimized microwave-assisted digestion procedure was used to digest the samples. The elements were determined by inductively coupled plasma mass spectrometry (ICP-MS). A wide range of metal concentrations were observed between the species analysed. Somewhat higher concentrations of Cd (5.99μg g(-1)), Co (372μg g(-1)), Mn (640μg g(-1)), Ni (17.2μg g(-1)) and Zn (51.4μg g(-1)) were found in the brown macroalgae species Padina spp., whereas elements, such as As (19.7μg g(-1)) and Pb (8.27μg g(-1)), were mainly concentrated in the species Sargassum spp. and Bostrychia montagnei, respectively. Statistical analyses (ANOVA) of the Padina data showed significant inter-site differences for all metals examined except nickel.

  15. Biodiversity and spatial distribution of epiphytic ferns on Alsophila setosa Kaulf. (Cyatheaceae caudices in Rio Grande do Sul, Brazil

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    JL. Schmitt

    Full Text Available The extractive exploitation of the tree fern Alsophila setosa Kaulf. alters forest formations and diminishes the availability of micro-habitat for epiphytes. A survey of epiphytic fern communities on A. setosa at 16 study sites in different forest formations in the State of Rio Grande do Sul, Brazil, documented the occurrence of 31 species representing 16 genera and six families. The greatest richness of species occurred in Polypodiaceae (39% and in the genus Asplenium L. (22%. Habitual holoepiphyte was the predominant ecological category, representing 61% of the species. Similarity analysis demonstrated heterogeneity in the composition of the epiphytic ferns at the study sites and indicated that the vegetation type is not the main factor for floristic difference. The lowest total specific richness (5 was recorded for the seasonal deciduous forest site. The majority of the sites presented similar averages of phorophyte height and epiphyte richness per caudex. In 25% of the sites the height of the host plants presented significant correlation with specific richness. Considering that the majority of the epiphytes are habitual and that some of them occur exclusively or preferentially on tree ferns, the maintenance of these host plants in the vegetation is essential for the conservation of epiphytic species.

  16. Distribution of rare earths, thorium and uranium in bryophytes and soils in Tripui Ecological Station, Minas Gerais, Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Palmieri, Helena E.L. [Centro de Desenvolvimento da Tecnologia Nuclear (CDTN/CNEN-MG), Belo Horizonte, MG (Brazil)], E-mail: help@cdtn.br; Nalini Junior, Herminio A. [Universidade Federal de Ouro Preto (UFOP), MG (Brazil). Dept. de Geologia], E-mail: nalini@degeo.ufop.br; Friese, Kurt [Helmholtz Centre for Environmental Research- UFZ, Magdeburg (Germany). Dept. of Lake Research], E-mail: kurt.friese@ufz.de

    2007-07-01

    The concentrations of rare earth elements (REEs), thorium and uranium were determined in liverworts (Noteroclada confluens (Tayl.) and Dumortirea hirsute (Sw.) Nees), in mosses (Leucobryum martianum (Hornsh.) Hampe, Vesicularia vesicularis (Schwaegr.) Broth., Pyrrhobruym spiniforme (Hedw.) Mitt. and Sematophyllum subsimplex (Hedw.) Mitt.) and in the soil upon which they were growing. The samples were collected on the margins of the main streams of the Tripui Ecological Station, located in the valley of the Tripui stream near the town of Ouro Preto, Minas Gerais State, Brazil. For decades, this Station has been the object of interest of many studies due to its historical, ecological and environmental importance. Analyses in bryophytes (mosses and liverworts) were determined by inductively coupled plasma mass spectrometry (ICP-MS) and in the soil samples by using neutron activation analysis (NAA), specifically the k{sub 0}-standardization method and the energy dispersive spectrometry technique (EDS). Lanthanum (La), cerium (Ce) and neodymium (Nd) were present in higher concentrations in soils and bryophytes than other REEs. It was observed that in all the collected bryophytes species the elements Th, U, Y, La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy, Ho, Er and Yb were transferred from the soil water to these plants. These bryophytes presented different capacities of accumulating these elements with the liverworts (Noteroclada confluens and Dumortirea hirsute) and the moss Leucobryum martianum showing a more efficient accumulation capacity than the other bryophyte species. (author)

  17. Distribution of strain type and antimicrobial susceptibility of Escherichia coli isolates causing meningitis in a large urban setting in Brazil.

    Science.gov (United States)

    Berman, Hillary; Barberino, Maria Goreth; Moreira, Edson Duarte; Riley, Lee; Reis, Joice N

    2014-05-01

    The clinical management of meningitis caused by Escherichia coli is greatly complicated when the organism becomes resistant to broad-spectrum antibiotics. We sought to characterize the antimicrobial susceptibilities, sequence types (ST), and presence of known drug resistance genes of E. coli isolates that caused meningitis between 1996 and 2011 in Salvador, Brazil. We then compared these findings to those for E. coli isolates from community-acquired urinary tract infections (UTI) that occurred during the same time period and in the same city. We found that 19% of E. coli isolates from cases of meningitis and less than 1% of isolates from UTI were resistant to third-generation cephalosporins. The sequence types of E. coli isolates from cases of meningitis included ST131, ST69, ST405, and ST62, which were also found among isolates from UTI. Additionally, among the E. coli isolates that were resistant to third-generation cephalosporins, we found genes that encode the extended-spectrum beta-lactamases CTX-M-2, CTX-M-14, and CTX-M-15. These observations demonstrate that compared to E. coli strains isolated from cases of community-acquired UTI, those isolated from cases of meningitis are more resistant to third-generation cephalosporins, even though the same sequence types are shared between the two forms of extraintestinal infections.

  18. Seed dispersal, plant recruitment and spatial distribution of Bactris acanthocarpa Martius (Arecaceae) in a remnant of Atlantic forest in northeast Brazil

    Science.gov (United States)

    Silva, Maria G.; Tabarelli, Marcelo

    2001-12-01

    Seed dispersal ecology of Bactris acanthocarpa Mart. (Arecaceae), an Atlantic forest understory palm, was investigated during two years as an attempt to test the following predictions: (i) seeds of Bactris are dispersed by mammals and large-gaped birds; (ii) Bactris benefits from seed dispersal in terms of seed predation avoidance, improvement of seed germination and seedling survival; and (iii) spatial distribution of adults is related to patterns of seed dispersal. The study was conducted at Dois Irmãos Reserve, a 387.4-ha reserve of Atlantic forest in northeastern Brazil (8º S-35º W). Black-rumped agoutis ( Dasyprocta prymnolopha) and Guianan squirrels ( Sciurus aestuans) were identified as the seed dispersers/predators, moving seeds short distances ( 4 m away in contrast to 96% of seedlings that occurred concentrated within 4 m from adults (77% under the palm crowns). Here, we present evidence that spatial distribution of B. acanthocarpa is partly due to low rates of seed removal, short-distance seed dispersal by agoutis and squirrels, and early seedling mortality associated with presence of seedlings under palm crowns.

  19. Cogeneration, micro turbines and fuel cells: perspectives for distributed generation in Brazil; Cogeracao, microturbinas e celulas a combustivel: perspectivas para geracao distribuida no Brasil

    Energy Technology Data Exchange (ETDEWEB)

    Leite, Marco Antonio Haikal [PETROBRAS, Rio de Janeiro, RJ (Brazil). Centro de Pesquisas (CENPES)

    2004-07-01

    Brazil has a large potential to install distributed generation systems, using natural gas or renewable like solar, wind or biomass energy. Regarding urban centers, natural gas fired cogeneration and other distributed energy technologies find economical applications. Cogeneration is defined as the generation of two kinds of useful energy from a single energy source. Usually, electrical energy and thermal energy as steam or hot water are produced. By using the absorption refrigeration cycle, chilled water can also be produced to be used in air conditioned systems, often called tri generation, a good alternative to industries, commercial buildings, shopping centers, hospitals, schools and universities. Micro turbines find utilization whenever natural gas is available, but not electricity, like gas compression installations, unmanned platforms or remote production fields. Fuel cells are used in systems requiring high levels of reliability or wherever the non availability cost is high. This paper describe technical and economical data related to PETROBRAS Research Center (CENPES) 3,200 kW electric energy and 1,000 RT chilled water cogeneration system, 200 kW fuel cell and 30 kW and 60 kW microturbines. (author)

  20. Population biology and distribution of the portunid crab Callinectes ornatus (Decapoda: Brachyura in an estuary-bay complex of southern Brazil

    Directory of Open Access Journals (Sweden)

    Timoteo T. Watanabe

    2014-08-01

    Full Text Available Trawl fisheries are associated with catches of swimming crabs, which are an important economic resource for commercial as well for small-scale fisheries. This study evaluated the population biology and distribution of the swimming crab Callinectes ornatus (Ordway, 1863 in the Estuary-Bay of São Vicente, state of São Paulo, Brazil. Crabs were collected from a shrimp fishing boat equipped with a semi-balloon otter-trawl net, on eight transects (four in the estuary and four in the bay from March 2007 through February 2008. Specimens caught were identified, sexed and measured. Samples of bottom water were collected and the temperature and salinity measured. A total of 618 crabs were captured (332 males, 267 females and 19 ovigerous females, with a sex ratio close to 1:1. A large number of juveniles were captured (77.67%. Crab spatial distributions were positively correlated with salinity (Rs = 0.73, p = 0.0395 and temperature (Rs = 0.71, p = 0.0092. Two peaks of recruitment occurred, in summer and autumn, and ovigerous females were mostly captured during summer, showing a seasonal reproductive pattern. The results showed that C. ornatus uses the bay as a nursery area for juvenile development. Callinectes ornatus is not yet a legally protected species, and the minimum allowed size of crabs caught in the area, although already restricted, should be carefully evaluated since the removal of large numbers of juveniles could negatively impact the local population.

  1. Influence of Topographic and Hydrographic Factors on the Spatial Distribution of Leptospirosis Disease in São Paulo County, Brazil: An Approach Using Geospatial Techniques and GIS Analysis

    Science.gov (United States)

    Ferreira, M. C.; Ferreira, M. F. M.

    2016-06-01

    Leptospirosis is a zoonosis caused by Leptospira genus bacteria. Rodents, especially Rattus norvegicus, are the most frequent hosts of this microorganism in the cities. The human transmission occurs by contact with urine, blood or tissues of the rodent and contacting water or mud contaminated by rodent urine. Spatial patterns of concentration of leptospirosis are related to the multiple environmental and socioeconomic factors, like housing near flooding areas, domestic garbage disposal sites and high-density of peoples living in slums located near river channels. We used geospatial techniques and geographical information system (GIS) to analysing spatial relationship between the distribution of leptospirosis cases and distance from rivers, river density in the census sector and terrain slope factors, in Sao Paulo County, Brazil. To test this methodology we used a sample of 183 geocoded leptospirosis cases confirmed in 2007, ASTER GDEM2 data, hydrography and census sectors shapefiles. Our results showed that GIS and geospatial analysis techniques improved the mapping of the disease and permitted identify the spatial pattern of association between location of cases and spatial distribution of the environmental variables analyzed. This study showed also that leptospirosis cases might be more related to the census sectors located on higher river density areas and households situated at shorter distances from rivers. In the other hand, it was not possible to assert that slope terrain contributes significantly to the location of leptospirosis cases.

  2. Biomphalaria species distribution and its effect on human Schistosoma mansoni infection in an irrigated area used for rice cultivation in northeast Brazil

    Directory of Open Access Journals (Sweden)

    Delmany Moitinho Barboza

    2012-09-01

    Full Text Available The role of irrigated areas for the spread of schistosomiasis is of worldwide concern. The aim of the present study was to investigate the spatial distribution of the intermediate snail host Biomphalaria in an area highly endemic for schistosomiasis due to Schistosoma mansoni, evaluating the relationship between irrigation and types of natural water sources on one hand, and the influence of place and time of water exposure on the intensity of human infection on the other. A geographical information system (GIS was used to map the distribution of the intermediate snail hosts in Ilha das Flores, Sergipe, Brazil, combined with a clinical/epidemiological survey. We observed a direct correlation between the intensity of human infection with S. mansoni and irrigation projects. Malacological studies to identify snail species and infection rates showed that B. glabrata is the main species responsible for human schistosomiasis in the municipality, but that B. straminea also plays a role. Our results provide evidence for a competitive selection between the two snail species in rice fields with a predominance of B. glabrata in irrigation systems and B. straminea in natural water sources.

  3. Identification of a new hepatitis B virus recombinant D2/D3 in the city of São Paulo, Brazil.

    Science.gov (United States)

    Santana, Luiz Claudio; Mantovani, Nathalia Pena; Ferreira, Maira Cicero; Arnold, Rafael; Duro, Rodrigo Lopes Sanz; Ferreira, Paulo Roberto Abrão; Hunter, James Richard; Leal, Élcio; Diaz, Ricardo Sobhie; Komninakis, Shirley Vasconcelos

    2017-02-01

    Two hundred forty million people are chronically infected with hepatitis B virus (HBV) worldwide. The rise of globalization has facilitated the emergence of novel HBV recombinants and genotypes. We evaluated HBV genotypes and recombinants, mutations associated with resistance to antivirals (AVs), progression of hepatic illness, and inefficient hepatitis B vaccination responses in chronically infected individuals in the city of São Paulo, Brazil. Forty-five full-length and 24 partial-length sequences were obtained. The genotype distribution was as follows: A (66.7%), D (15.9%), F (11.6%) and C (4.3%). We describe a new recombinant (D2/D3), confirmed through next-generation sequencing (NGS) and reconstruction of the quasispecies sequences in silico. Primary resistance and major vaccine escape mutations were not found. We did, however, find mutations in the S region that might may be related to HBV antigenicity changes, as well as Pre-S deletions. The precore/core mutations A1762T + G1764A (40.9%) were found mostly in genotypes A and D, and G1896A (29.55%) was more frequent in genotype D than in genotype A. The genotypic distribution reflects the history of Brazilian immigration. This is the first description of recombination between genotypes D2 and D3 in Brazil. It is also the first confirmation through NGS and reconstruction of the quasispecies in silico. However, little is known about the response to treatment of recombinants. This demonstrates the need for molecular epidemiology studies involving the analysis of full-length HBV sequences.

  4. The influence of environmental characteristics on the distribution of ciliates (Protozoa, Ciliophora in an urban stream of southeast Brazil

    Directory of Open Access Journals (Sweden)

    RJP. Dias

    Full Text Available The aim of this research was to study the ciliated protozoa community at three sampling stations that receive different levels of domestic sewage along the São Pedro Stream in the municipality of Juiz de Fora, Minas Gerais, Brazil, in order to determine the influence of organic pollution on this community and to assess the feasibility of using ciliates as water quality indicators. Four physical-chemical parameters of the water samples were evaluated: dissolved oxygen concentration, electrical conductivity, pH and temperature. The sediment was obtained manually, using dredges with capacity of 300 mL, at each collection point. Point 1 was located in a rural region that receives a low sewage load, while Points 2 and 3 were located in populated regions receiving high sewage loads. We found 22 ciliate species, of which 18 are included in the saprobic system and are considered bioindicators. These showed beta-mesosaprobic environments at Point 1 and alfa-mesosaprobic to polisaprobic environments at Points 2 and 3. The low levels of dissolved oxygen and the high electrical conductivity values at Points 2 and 3, together with the strong similarity between the ciliate taxocenoses of these points and the weak similarity between Point 1 and the other two, confirm the high sewage loads received at the latter two points. The combination of the biological indicators and physical-chemical analyses therefore proved itself to be an efficient method of evaluating water quality, and has excellent potential to support decisions on the conservation of headwaters and recuperation of degraded environments in lotic systems.

  5. Temporal distribution of Aedes aegypti in different districts of Rio de Janeiro, Brazil, measured by two types of traps.

    Science.gov (United States)

    Honório, N A; Codeço, C T; Alves, F C; Magalhães, M A F M; Lourenço-De-Oliveira, R

    2009-09-01

    Dengue dynamics in Rio de Janeiro, Brazil, as in many dengue-endemic regions of the world, is seasonal, with peaks during the wet-hot months. This temporal pattern is generally attributed to the dynamics of its mosquito vector Aedes aegypti (L.). The objectives of this study were to characterize the temporal pattern of Ae. aegypti population dynamics in three neighborhoods of Rio de Janeiro and its association with local meteorological variables; and to compare positivity and density indices obtained with ovitraps and MosquiTraps. The three neighborhoods are distinct in vegetation coverage, sanitation, water supply, and urbanization. Mosquito sampling was carried out weekly, from September 2006 to March 2008, a period during which large dengue epidemics occurred in the city. Our results show peaks of oviposition in early summer 2007 and late summer 2008, detected by both traps. The ovitrap provided a more sensitive index than MosquiTrap. The MosquiTrap detection threshold showed high variation among areas, corresponding to a mean egg density of approximately 25-52 eggs per ovitrap. Both temperature and rainfall were significantly related to Ae. aegypti indices at a short (1 wk) time lag. Our results suggest that mean weekly temperature above 22-24 degrees C is strongly associated with high Ae. aegypti abundance and consequently with an increased risk of dengue transmission. Understanding the effects of meteorological variables on Ae. aegypti population dynamics will help to target control measures at the times when vector populations are greatest, contributing to the development of climate-based control and surveillance measures for dengue fever in a hyperendemic area.

  6. Distribution of HPV Genotypes and Involvement of Risk Factors in Cervical Lesions and Invasive Cervical Cancer: A Study in an Indian Population

    Science.gov (United States)

    Srivastava, Shikha; Shahi, U P; Dibya, Arti; Gupta, Sadhana; Roy, Jagat K

    2014-01-01

    Human papilloma virus (HPV) is considered as the main sexually transmitted etiological agent for the cause and progression of preneoplastic cervical lesions to cervical cancer. This study is discussing the prevalence of HPV and its genotypes in cervical lesions and invasive cervical cancer tissues and their association with various risk factors in women from Varanasi and its adjoining areas in India. A total of 122 cervical biopsy samples were collected from SS Hospital and Indian Railways Cancer Institute and Research Centre, Varanasi and were screened for HPV infection by PCR using primers from L1 consensus region of the viral genome. HPV positive samples were genotyped by type-specific PCR and sequencing. The association of different risk factors with HPV infection in various grades of cervical lesion was evaluated by chi-square test. A total of 10 different HPV genotypes were observed in women with cervicitis, CIN, invasive squamous cell cervical carcinoma and adenocarcinoma. Increased frequency of HPV infection with increasing lesion grade (p=0.002) was observed. HPV16 being the predominant type was found significantly associated with severity of the disease (p=0.03). Various socio- demographic factors other than HPV including high parity (p<0.0001), rural residential area (p<0.0001), elder age (p<0.0001), low socio-economic status (p<0.0001) and women in postmenopausal group (p<0.0001) were also observed to be associated with cervical cancer.These findings show HPV as a direct cause of cervical cancer suggesting urgent need of screening programs and HPV vaccination in women with low socio-economic status and those residing in rural areas. PMID:25035855

  7. Prenatal pesticide exposure and PON1 genotype associated with adolescent body fat distribution evaluated by dual X-ray absorptiometry (DXA)

    DEFF Research Database (Denmark)

    Tinggaard, J.; Wohlfahrt-Veje, C.; Husby, S.

    2016-01-01

    ) at age 10-15. Prenatal pesticide exposure was associated with increased total, android, and gynoid fat% (DXA) at age 10-15 years after adjustment for sex, socioeconomic status, and puberty (all β = 0.5 standard deviation score (SDS) p ... (total fat: β = 0.7 SDS, android-gynoid ratio: β = 0.1, both p ... circumference were found. Prenatal pesticide exposure was associated with higher adolescent body fat content, including android fat deposition, independent of puberty. Girls appeared more susceptible than boys. Furthermore, the association depended on maternal and child PON1 Q192R genotype....

  8. USE OF THE DE LIOCOURT QUOTIENT IN THE EVALUATION OF THE DIAMETRIC DISTRIBUTION IN FRAGMENTS OF OMBROPHYLOUS FOREST, PERNAMBUCO STATE-BRAZIL

    Directory of Open Access Journals (Sweden)

    Francisco Tarcísio Alves Junior

    2010-08-01

    Full Text Available Great part of the biodiversity of the ecosystem of tropical forests is being lost even before we have full knowledge of its natural wealth, making it important perform studies that can provide knowledge and the maintenance of its structure, besides making possible the exploration of its products, goods and/or services in a planned and rational form, guaranteeing the continuous flow of these resources. The general objective of this study was to use the De Liocourt quotient in the evaluation of the diametric distribution in fragments of Ombrophylous Forest located in the city of Catende, Pernambuco state - Brazil, having as specific objectives: to describe the diametric structure of the fragments and the species of greater importance using the Value of Importance Index (VI; and to evaluate the degradation and the state of succession of the studied areas. The diametric distribution revealed uneven-aged forests as the diametric curve of distribution resembled a reverse J-shape. The values of basal area in the fragments were of 23.6 and 20.9 m2.ha-1, for Mata das Caldeiras and Mata das Galinhas. The fragments were, on average, in the secondary period of succession. Some species presented difficulties in the rate of recruitment, which could lead to the extinguishing of some species in the future. Species, such as Tapirira guianensis Aubl., Dialium guianense (Aubl. Sandwith and Brosimum discolor Schott, demonstrated a distinct diametric structure among the fragments. The species Plathymenia foliolosa Benth. presented accented discontinuities in the diametric structure in both areas.

  9. Selection of Cactus Pear Forage (Opuntia spp.) and (Nopalea spp.) Genotypes resistant to the Carmine Cochineal (Dactylopius opuntiae cockerell, 1929) in the State of Paraíba, Brazil

    OpenAIRE

    2010-01-01

    Since 2001, the giant cactus pear (O. ficus-indica) has been decimated by carmine cochineal (Dactylopius opuntiae Cockerell, 1929), considered a potentially devastating pest. The objective of this research was to select genotypes resistant of cactus pear to the carmine cochineal. The experiment was conducted at the Laboratory of Plant Protection of Lagoa Seca Experimental Station owned by the Agricultural Research Corporation of Paraiba-EMEPA-PB, during the months of February to July 2009. We...

  10. Modeling of spatial distribution for scorpions of medical importance in the São Paulo State, Brazil

    Directory of Open Access Journals (Sweden)

    José Brites-Neto

    2015-07-01

    Full Text Available Aim: In this work, we aimed to develop maps of modeling geographic distribution correlating to environmental suitability for the two species of scorpions of medical importance at São Paulo State and to develop spatial configuration parameters for epidemiological surveillance of these species of venomous animals. Materials and Methods: In this study, 54 georeferenced points for Tityus serrulatus and 86 points for Tityus bahiensis and eight environmental indicators, were used to generate species distribution models in Maxent (maximum entropy modeling of species geographic distributions version 3.3.3k using 70% of data for training (n=38 to T. serrulatus and n=60 to T. bahiensis and 30% to test the models (n=16 for T. serrulatus and n=26 for T. bahiensis. The logistic threshold used to cut models in converting the continuous probability model into a binary model was the “maximum test sensitivity plus specificity,” provided by Maxent, with results of 0.4143 to T. serrulatus and of 0.3401 to T. bahiensis. The models were evaluated by the area under the curve (AUC, using the omission error and the binomial probability. With the data generated by Maxent, distribution maps were produced using the “ESRI® ArcGIS 10.2.2 for Desktop” software. Results: The models had high predictive success (AUC=0.7698±0.0533, omission error=0.2467 and p<0.001 for T. serrulatus and AUC=0.8205±0.0390, omission error=0.1917 and p<0.001 for T. bahiensis and the resultant maps showed a high environmental suitability in the north, central, and southeast of the state, confirming the increasing spread of these species. The environmental variables that mostly contributed to the scorpions species distribution model were rain precipitation (28.9% and tree cover (28.2% for the T. serrulatus and temperature (45.8% and thermal amplitude (12.6% for the T. bahiensis. Conclusion: The distribution model of these species of medical importance scorpions in São Paulo State

  11. Development and training for the professional of the gas distribution industry in Brazil; Formation des professionnels de l'industrie de la distribution du gaz au Bresil

    Energy Technology Data Exchange (ETDEWEB)

    Hatsumi Nagato, D. [Workout Energy Business (Brazil)

    2000-07-01

    This work will present a Training and Development model for professionals of the gas distribution industry. Today's there are not schools developing gas related subjects. It's important to give to the future gas man, the knowledge needed to develop their activities. This can be achieved by focusing on criteria based on The Competency Concept and Learning Organization. To develop professional 'competency' we consider this tree of basic points: to know, to know how to do and wish to do ( willing ). We are going to present the 'minimum' 'competences' required for gas distribution companies and the methods used to qualify people for emergent gas industries, considering basically four professionals groups: workers, technicians, engineers and managers. (author)

  12. Diversity and distribution of sandflies (Diptera: Psychodidae: Phlebotominae in a military area in the state of Amazonas, Brazil

    Directory of Open Access Journals (Sweden)

    Luís Henrique Monteiro Gomes

    2013-08-01

    Full Text Available This study reports the distribution, ecotopes and fauna diversity of sandflies captured in five training bases on a military reserve in Manaus, state of Amazonas (AM. A total of 10,762 specimens were collected, which were distributed among 58 species, with the highest number recorded at Base Instruction 1 (BI1. A higher rate of species richness was found at the Base Instruction Boina Rajada and low levels of diversity associated with a high abundance index with the clear dominance of Lutzomyia umbratilis, Lutzomyia ruii and Lutzomyia anduzei were found at BI1. The abundance of Lu. umbratilis raises the possibility of outbreaks of American cutaneous leishmaniasis by the main vector of the disease in AM.

  13. SPATIAL DISTRIBUTION AND POPULATION STRUCTURE OF PALMS (ARECACEAE IN A FOREST FRAGMENT OF LOWLAND DENSE HUMID FOREST IN SOUTH BRAZIL

    Directory of Open Access Journals (Sweden)

    Laura Cappelatti

    2015-01-01

    Full Text Available In the state of Rio Grande do Sul, the Dense Humid Forest is reduced to less than 5% of its original cover. However, it still has the highest richness of palms in this state, which constitute an important and economically relevant group. Environmental and demographic aspects of plant populations in forest fragments are of great importance for their management and conservation. We conducted a study on the spatial distribution and age structure of five palm species in a forest fragment at the municipality of Três Cachoeiras, in the north coast of Rio Grande do Sul. We delimited 25 10×10 m plots and counted the number of individuals in the stages of seedling, juvenile and adult for each palm species. Aggregation Indices were calculated with software SADIEShell. We performed variation partitioning analyses among species distribution and environmental variables canopy openness and soil moisture. A total of 1,443 plants were counted and the most abundant species was Euterpe edulis. The average density was of 57.72 ind. 100 m-2. Three species showed a pattern of “inverse J”, which indicated that they have a potential for regenerating in that palm community. The predominant spatial pattern was aggregated (Ia>1 and canopy openness did not influence species abundances. Only the distribution of Bactris setosa and Geonoma gamiova, both understory species, was explained by soil moisture, suggesting that other abiotic or biotic factors may be influencing the spatial arrangement of the canopy species.

  14. Richness and distribution of unicellular eukaryotes in three streams under anthropic influence, Ivinhema City, Mato Grosso do Sul State, Brazil

    Directory of Open Access Journals (Sweden)

    Emílio Colzani

    2013-08-01

    Full Text Available Unicellular eukaryotes are abundant in most aquatic environments and contribute in several ways to ecosystems. For example, they act as producers, as primary and secondary consumers, and they aid in the decrease and control of bacteria communities and in nutrient cycling. The aim of this study was to describe the abundance and distribution of unicellular eukaryotes in Ponta Porã stream and in its main tributary streams, as well as possible relationships between their presence and water quality on the sampled sites. We selected six sites (locals, considering headwaters (L1 and L2, downstreams (L5 and L6 and the main pollution source (L3. We used similarity and canonical correspondence analysis to evaluate relationships between microorganism abundance and distribution to abiotic variables (dissolved oxygen, pH, temperature, turbidity and conductivity. Abundance was related to the increase of organic and inorganic sediment due to decomposition and erosion. We had a variation on the genera distribution, with slight predominance of ciliates, and some genera used as eutrophicated environmental indicators. The presence of Vorticella, Saprodinium, Paramecium, Metopus and Chilodonella suggests an environment ranging from polysaprobic to olygosaprobic. Urostyla, that has been used as water quality indicators, the flagellate Cercomonas, that has broad dispersion in aquatic environments, Didinium, a ciliate predator widely dispersed, Synura, a chrysophyte sensitive to basic pH and high temperatures, and Amoeba, frequently found in clean or in depuration process waters, may suggest a recuperating environment, since they are also found on lesser impacted sites.

  15. High sensitivity C-reactive protein distribution in the elderly: the Bambuí Cohort Study, Brazil

    Directory of Open Access Journals (Sweden)

    L.G.S. Assunção

    2012-12-01

    Full Text Available The measurement of the serum concentration of the acute-phase reactant C-reactive protein (CRP provides a useful marker in clinical practice. However, the distribution of CRP is not available for all age and population groups. This study assessed the distribution of high sensitivity-CRP (hs-CRP by gender and age in 1470 elderly individuals from a Brazilian community that participates in the Bambuí Cohort Study. Blood samples were collected after 12 h of fasting and serum samples were stored at -70°C. Measurements were made with a commercial hs-CRP immunonephelometric instrument. More than 50% of the results were above 3.0 mg/L for both genders. Mean hs-CRP was higher in women (3.62 ± 2.58 mg/L than in men (3.03 ± 2.50 mg/L. This difference was observed for all ages, except for the over-80 age group. This is the first population-based study to describe hs-CRP values in Latin American elderly subjects. Our results indicate that significant gender differences exist in the distribution of hs-CRP, and suggest that gender-specific cut-off points for hs-CRP would be necessary for the prediction of cardiovascular risks.

  16. High sensitivity C-reactive protein distribution in the elderly: the Bambuí Cohort Study, Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Assunção, L.G.S. [Programa de Pós-Graduação em Patologia, Faculdade de Medicina, Universidade Federal de Minas Gerais, Belo Horizonte, MG (Brazil); Eloi-Santos, S.M. [Programa de Pós-Graduação em Patologia, Faculdade de Medicina, Universidade Federal de Minas Gerais, Belo Horizonte, MG (Brazil); Departamento de Propedêutica Complementar, Faculdade de Medicina, Universidade Federal de Minas Gerais, Belo Horizonte, MG (Brazil); Peixoto, S.V. [Departamento de Enfermagem Aplicada, Escola de Enfermagem, Universidade Federal de Minas Gerais, Belo Horizonte, MG (Brazil); Centro de Pesquisas René Rachou, Fundação Oswaldo Cruz, Belo Horizonte, MG (Brazil); Lima-Costa, M.F. [Departamento de Medicina Preventiva e Social, Universidade Federal de Minas Gerais, Belo Horizonte, MG (Brazil); Centro de Pesquisas René Rachou, Fundação Oswaldo Cruz, Belo Horizonte, MG (Brazil); Vidigal, P.G. [Programa de Pós-Graduação em Patologia, Faculdade de Medicina, Universidade Federal de Minas Gerais, Belo Horizonte, MG (Brazil); Departamento de Propedêutica Complementar, Faculdade de Medicina, Universidade Federal de Minas Gerais, Belo Horizonte, MG (Brazil)

    2012-09-28

    The measurement of the serum concentration of the acute-phase reactant C-reactive protein (CRP) provides a useful marker in clinical practice. However, the distribution of CRP is not available for all age and population groups. This study assessed the distribution of high sensitivity CRP (hs-CRP) by gender and age in 1470 elderly individuals from a Brazilian community that participates in the Bambuí Cohort Study. Blood samples were collected after 12 h of fasting and serum samples were stored at -70°C. Measurements were made with a commercial hs-CRP immunonephelometric instrument. More than 50% of the results were above 3.0 mg/L for both genders. Mean hs-CRP was higher in women (3.62 ± 2.58 mg/L) than in men (3.03 ± 2.50 mg/L). This difference was observed for all ages, except for the over-80 age group. This is the first population-based study to describe hs-CRP values in Latin American elderly subjects. Our results indicate that significant gender differences exist in the distribution of hs-CRP, and suggest that gender-specific cut-off points for hs-CRP would be necessary for the prediction of cardiovascular risks.

  17. Distribution and origin of polycyclic aromatic hydrocarbons in surface sediments from an urban river basin at the Metropolitan Region of Curitiba, Brazil

    Institute of Scientific and Technical Information of China (English)

    Natalicio Ferreira Leite; Patricio Peralta-Zamora; Marco Tadeu Grassi

    2011-01-01

    The concentrations of 16 polycyclic aromatic hydrocarbons (PAHs) were determined in surface sediment samples from nine sites located at the Iguacu River Basin in the Metropolitan Region of Curitiba, Brazil to evaluate their distribution and sources.The total concentration of the PAHs was greater for sediments from highly urbanized areas, while the sediments from the IraíEnvironmental Protection Area (IraíEPA) showed significantly low concentrations.The sediments from the Iguacu and Barigui rivers were classified as highly contaminated, while those from the Cercado and Curralinho rivers were classified as moderately contaminated.The predominance of PAHs containing two to four aromatic rings in most of the samples suggested the direct input of raw sewage into the water resources evaluated.Benzo[g,h,i]perylene, dibenzo[a,h]anthracene and indeno[1,2,3-cd]pyrene were predominant in sediments from the areas under the greatest urban and industrial development.The correlation between thermodynamic stability and the kinetics of evolution presented by the isomeric pairs indicated that combustion is the predominant source of PAHs in the sediments because the combustion of fossil fuels affected most of the points evaluated, followed by combustion of biomass and eventually combustion of oil product inputs.In general, the results showed that areas under strong urban influence, as well as the IraíEPA, receive contributions of PAils from similar sources.

  18. Profile and geographic distribution of reported cases of visceral leishmaniasis in Campo Grande, State of Mato Grosso do Sul, Brazil, from 2002 to 2009

    Directory of Open Access Journals (Sweden)

    Júlia Cristina Maksoud Brazuna

    2012-10-01

    Full Text Available INTRODUCTION: This study sought to describe the profile and geographic distribution of reported cases of visceral leishmaniasis (VL in the City of Campo Grande, State of Mato Grosso do Sul (MS, Brazil, from 2002 to 2009. METHODS: Human data were collected from the Brazilian National Information System for Notifiable Diseases. Canine cases and entomological data were obtained from the Information Service for Canine Visceral Leishmaniasis Control/Campo Grande, MS. RESULTS: A total of 951 records from 2002 to 2009 were investigated. The number of reported cases of VL in males was significantly higher (p < 0.0001 than that in females. The higher frequency observed among males was associated with age (p < 0.0001, which increased in individuals aged 40 years and older. The overall fatality rate was 7.4%. Entomological surveys conducted in 2006, 2007, and 2009 showed the insect vector Lutzomyia longipalpis to be present in all urban regions of the county. CONCLUSIONS: VL cases in humans and dogs, as well as in vectors, occurs in all urban regions of Campo Grande. Despite not observing tendencies of increase or reduction in the incidence of the disease due to aging, the major incidence in men is higher in those aged 40 years or above.

  19. Distribution of 226Ra, 232Th and 40K in soils and sugar cane crops at Corumbataí river basin, São Paulo State, Brazil.

    Science.gov (United States)

    da Conceição, Fabiano Tomazini; Bonotto, Daniel Marcos; Jiménez-Rueda, Jairo Roberto; Roveda, José Arnaldo Frutuoso

    2009-06-01

    The common use of phosphate fertilizers NPK and amendments in sugar cane crops in Brazilian agriculture may increase the (226)Ra, (232)Th and (40)K activity concentrations in soils and their availability for plants and human food chain. Thus, the main aim of this study was to evaluate the distribution of (226)Ra, (232)Th and (40)K in soils and sugar cane crops in the Corumbataí river basin, São Paulo State, Brazil. The gamma spectrometry was utilized to measure the (226)Ra, (232)Th and (40)K activity concentration in all samples. The soil-to-sugar cane transfer factors (TF) were quantified using the ratio between the radionuclide activity concentration in sugar cane and its activity concentration in soil. The results show that, although radionuclides incorporated in phosphate fertilizers and amendments are annually added in the sugar cane crops, if utilized in accordance with the recommended rates, their use does not lead to hazards levels in soils. The soil-to-sugar cane transfer of radionuclides occurred in the following order (40)K>(226)Ra>(232)Th. Therefore, under these conditions, radionuclides intake through consumption of sugar is not hazardous to human health.

  20. Distribution and Schistosoma mansoni infection of Biomphalaria glabrata in different habitats in a rural area in the Jequitinhonha Valley, Minas Gerais, Brazil: environmental and epidemiological aspects

    Directory of Open Access Journals (Sweden)

    Helmut Kloos

    2004-11-01

    Full Text Available This paper examines the distribution and infection of Biomphalaria glabrata with Schistosoma mansoni in all aquatic snail habitats in a rural area in the state of Minas Gerais, Brazil, in relation to physico/biotic and behavioral factors. Snail and environmental surveys were carried out semi-annually between July 2001 and November 2002 at 106 sites. Collected snails were examined in the laboratory for infection. B. glabrata densities were highest in overflow ponds, irrigation ponds, springs, canals and wells, and lowest in fishponds and water tanks. Snail densities were higher during the hot, rainy season except for streams and canals and were statistically associated with the presence of fish, pollution, and vegetation density. Tilapia fish and an unidentified Diptera larva were found to be predators of B. glabrata but ducks were not. Twenty-four of the 25 infected snails were collected in 2001(1.4% infection rate and only one in 2002, after mass chemotherapy. The occurrence of B. glabrata in all 11 snail habitats both at and away from water contact sites studied indicates widespread risk of human infection in the study area. In spite of the strong association between B. glabrata and tilapia in fishponds we do not recommend its use in schistosomiasis control for ecological reasons and its relative inefficiency in streams and dams.

  1. Influence of effluents from a Wastewater Treatment Plant on nutrient distribution in a coastal creek from southern Brazil

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    Isaac Rodrigues Santos

    2008-02-01

    Full Text Available The hypothesis that effluents treated through activated sludge process cause changes in nutrient biogeochemistry of receiving water bodies was investigated in Vieira creek, southern Brazil. Dissolved oxygen, suspended matter, and pH did not vary among the sampling stations. Nutrient, biochemical oxygen demand, and conductivity values were significantly higher downstream from the Wastewater Treatment Plant (WWTP effluents. Further downstream, nitrate concentrations were higher due to ammonium nitrification, organic matter remineralization and/or the occurrence of unidentified sources. Per capita nutrient emission factors were estimated to be 0.16 kg P.yr-1 and 4.14 kg N.yr-1. Under pristine conditions, low N:P ratios were observed, which were significantly increased downstream due to the high ammonium input. The mixing zone of the nitrogen-rich waters from Vieira creek with the phosphorus-enriched waters from Patos lagoon estuary was considered under high risk of eutrophication. The results could be useful for planning and management of WWTP-effluent receiving waters in temperate regions from developing countries.A hipótese de que efluentes urbanos tratados através de um sistema de lodo ativado causam alterações na qualidade de água de ambientes aquáticos foi investigada no Arroio Vieira, Rio Grande, RS. Amostras de água foram coletadas a montante e a jusante dos emissários de uma estação de tratamento de esgoto (ETE. Oxigênio, material em suspensão e pH não variaram espacialmente. Já os valores para os nutrientes e para a demanda bioquímica do oxigênio foram significativamente maiores a jusante dos efluentes. Mais a jusante, as concentrações de nitrato aumentam devido à nitrificação do nitrogênio amoniacal, remineralização da matéria orgânica e/ou ocorrência de outros aportes não-identificados. A emissão de nutrientes per capita após o tratamento dos efluentes domésticos (0.16 kg P ano-1 e 4.14 kg N ano-1

  2. STR MARKERS. GENOTYPING APPLICATIONS

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    I. O. Sirbu

    2001-01-01

    Full Text Available STR (short tandem repeats loci consist of short, repetitive sequence elements of 2-8 bp in length. These abundant repeats are well distributed throughout the human genome and are rich source of highly polymorphic markers. There are literally hundreds of STR systems which have been mapped throughout the human genome. Several dozen have been investigated for application to human identity testing. These STR loci are found on almost every chromosome in the genome. They may be amplified using a variety of PCR primers. Tetranucleotide repeats have been most popular among forensic scientists due to their fidelity in PCR amplification although some tri- and pentanucleotide repeats are also in use. In this paper we intend (far from being exhaustive to present a synthesis of the characteristics of these genetic markers and their applications in genotyping, giving as an example the use of the STRs in a paternity testing case.

  3. Avaliação de genótipos de triticale e trigo em ambientes favoráveis e desfavoráveis no Estado de São Paulo Evaluation of triticale and wheat genotypes under favorable and unfavorable environments in the State of São Paulo, Brazil

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    JOÃO CARLOS FELICIO

    2001-01-01

    Full Text Available Avaliou-se a adaptação de 18 genótipos de triticale e dois de trigo em experimentos instalados em dois ambientes, na Estação Experimental de Agronomia do Instituto Agronômico, localizada em Mococa (SP, no período de 1996-99. No primeiro ambiente, aplicou-se a irrigação por aspersão em condição de sequeiro (favorável e, no segundo, várzea úmida com irrigação por inundação (desfavorável. A diversidade entre os ambientes propiciou diferença entre os padrões de resposta dos genótipos. No ambiente irrigado por aspersão, houve maior produtividade para ambas as espécies, sendo o genótipo de triticale TATU 4/ARDI 1 o que apresentou o melhor rendimento de grãos. Na várzea úmida, destacou-se o triticale LT 978.82/ASAD//TARASCA. O IAC 60 (trigo apresentou grande variação no rendimento de grãos de um ano para outro, nas condições de várzea. O ciclo das plantas, da emergência ao espigamento, foi mais longo entre os genótipos de triticale nas condições de várzea úmida, quando comparado ao cultivo irrigado por aspersão. Esses resultados indicam que os genótipos de trigo apresentam adaptação específica para o ambiente de sequeiro com irrigação por aspersão, e o grupo de genótipos de triticale, adaptação mais ampla.The environment adaptation of eighteen triticale and two wheat genotypes were evaluated in experiments carried out at two different sites of the Mococa Agronomy Experimental Station, São Paulo State, Brazil, in the period 1996-99. The favorable environment was provided with sprinkler irrigation on an upland; the unfavorable condition consisted of a moist flat area with basin irrigation system. The environment diversity induced different genotypes response patterns. Under the sprinkler irrigation system the yields were higher for both species, but the triticale genotype TATU 4/ARDI 1 presented the highest grain yield. Under moist and flat area condition the triticale LT 978.82/ASAD//TARASCA showed

  4. Produtividade de genótipos de batata inglesa tolerantes ao calor em duas épocas de plantio, no vale do São Francisco Productivity of heat tolerant potato genotypes in two planting times in São Francisco Valley, Northeast of Brazil

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    José Egídio Flori

    2000-07-01

    Full Text Available Com o objetivo de avaliar diferentes genótipos de batata tolerantes ao calor em duas épocas de plantio (inverno e primavera, instalaram-se dois experimentos no Campo Experimental de Bebedouro da Embrapa Semi-Árido, Petrolina (PE. O delineamento experimental foi blocos ao acaso com quatro repetições, utilizando-se os genótipos LT-9, 301251-1, 311320-1, 301217-1, 301159-1, Serrana x DTO-33 e a variedade comercial Baraka como testemunha. Na condição de clima quente (média de 25,8°C, o genótipo LT-9 apresentou a maior produtividade comercial (10,3 t/ha, seguido pelos demais tratamentos que não mostraram diferenças estatísticas entre si, à exceção de Serrana x DTO-33 que apresentou a menor produtividade (2,7 t/ha. O cultivo na condição de clima mais frio (média de 24,7°C, a produtividade total variou de 17,5 t/ha a 23,3 t/ha, sendo que o genótipo 301251-1 alcançou a maior produtividade (23,3 t/ha, não se verificando diferença estatística entre os tratamentos. Pelos resultados preliminares obtidos há indicação que os genótipos 301251-1, 311320-1; 301217-1 e 301159-1 podem ser plantados de abril a agosto como alternativas de cultivo à cultivar Baraka, necessitando, porém, de maiores investigações.The experiments were carried out at the Bebedouro Experimental Field of Embrapa Semi-Àrid Research Center in Petrolina, Brazil, to evaluate different heat tolerant potato genotypes under two climatic conditions. The experimental design was of randomized complete blocks with seven genotypes (LT-9, 301251-1, 311320-1, 301217-1, 301159-1, Serrana x DTO-33 and cv. Baraka and four replications. Under hot climatic condition (28°C the genotype LT-9 showed the highest commercial yield (10.3 t/ha, followed by the other treatments that didn't show statistical differences in relation to each other, except the genotype Serrana x DTO-33 which showed the lowest commercial yield (2.7 t/ha. Under favorable condition (23°C, the commercial

  5. Distribution, composition and seasonality of aquatic birds in the Nhecolândia sub-region of South Pantanal, Brazil.

    Science.gov (United States)

    Donatelli, R J; Posso, S R; Toledo, M C B

    2014-11-01

    Despite remarkable significance of Pantanal for the conservation of aquatic birds, the status of their populations, the spatiotemporal patterns of distribution and habitat use and structure of communities are little known. Thus, we studied three aquatic environments (Negro river, bays and salines) from 2007 to 2009 in the Nhecolândia Pantanal to verify the distribution and composition of aquatic birds and also if there is significant seasonal influence on these aspects. We adopted the transect method (288 hours of sampling) and recorded 135 species (7.834 individuals). The Negro river showed the highest diversity, while the salines the lowest. The similarity of aquatic bird communities was higher between bays and salines, followed by Negro river and bays and lower between salines and Negro river. The equidistribution is more variable in the salines and more stable in the Negro river. The environments strongly differ from each other in aquatic bird composition in space (habitat use and distribution) and time (seasonal water fluctuations). The diversity of bird community in the dry season varies significantly in the salines, followed by the bays and more stable in the Negro river. The Negro river, regardless of large annual amplitude of flow, is more seasonally stable since its riparian vegetation is continuous (not isolated) and constant. These aspects provide better conditions to stay all year, contributing to decrease the seasonal nomadic tendencies of aquatic birds. Finally, all these data provide strong arguments to the preservation of all phytophysiognomies in the Nhecolândia sub- region of Pantanal, but with special attention to the salines widely used by many flocks of aquatic birds (mainly in the dry season) and migrant and/or rare species restricted to this habitat.

  6. Analysis and Detection of Subtype Distribution of Human Papillomavirus Genotype in 347 Patients with Condyloma Acuminatum%347例尖锐湿疣患者人乳头瘤病毒基因型检测及分析

    Institute of Scientific and Technical Information of China (English)

    凌勇活; 孙菲; 张霞; 阮建波

    2016-01-01

    Objective:To analyze the subtype distribution of Human Papillomavirus ( HPV ) genotypes in patients with Condyloma Acuminatum ( CA ) , and to present relevant findings for HPV prevention efforts .Methods:Lesions were excised from 347 patients with CA , and the flow-through hybridization technique was used to detect and classify 21 HPV genotypes according to the appropriate subtype distribution .Results:The overall prevalence of HPV in CA patients was 95.10%.All 21 genotypes of HPV were found .In the 347 samples , the main HPV genotypes were 6 ( 36.31%) , 11 ( 29.39%) , 16 ( 13.83%) , 52 ( 11.24%) , 58 ( 8.07%) , and 39 (8.07%).105 (31.82%) patients were found to have a single low-risk HPV infection, 92 (27.88%) patients with a single high-risk HPV infection and 133(40.30%) patients with multi-ple HPV infections .There were significant differences in single high-risk HPV infection and multi-ple HPV infection between female and male patients ( P0.05 ) .Conclusion:HPV 6 and HPV 11 were the most com-monly found genotypes , followed by HPV16, HPV52, HPV58, HPV39.Identification of the most prevalent genotypes is significant for efforts to develop preventative vaccines in Dongguan .%目的:分析尖锐湿疣(CA)患者人乳头瘤病毒(HPV)基因型的感染情况,为制定HPV感染的预防策略提供理论依据。方法:采用核酸分子快速导流杂交基因芯片技术,对347例尖锐湿疣患者皮损组织进行HPV感染21种基因亚型检测。结果:347份 CA 组织标本中 HPV 阳性330例,检出率95.10%,21种HPV亚型均能检测出。排名位于前6位的亚型检出率由高到低依次是HPV6(36.31%,126/347)、HPV11(29.39%,102/347)、HPV16(13.83%,48/347)、HPV52(11.24%,39/347)、HPV58(8.07%,28/347)、HPV39(8.07%,28/347)。单一低危型感染占31.82%(105/330),单一高危型感染占27.88%(92/330),多重感染占40.30%(133/330)。不同

  7. Distribution of bovine fasciolosis and associated factors in south Espírito Santo, Brazil: an update

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    Isabella Vilhena Freire Martins

    Full Text Available The geographical distribution and factors associated with bovine fasciolosis in the south of Espírito Santo were updated and the prevalences of this disease and of snails of the genus Lymnaea in the municipality of Jerônimo Monteiro were calculated. In the first stage, fecal samples were collected from 10% of the herds of 115 farms in 23 municipalities and interviews were conducted with owners. Generalized linear mixed models were used. In the second stage, in Jerônimo Monteiro municipality, feces and mollusks were collected from all farms registered in the milk cooperatives in the region. The mollusks were identified and examined for infection by Fasciola hepatica. Fasciolosis was diagnosed in 18 (78% of the 23 municipalities. Of the 1157 fecal samples examined, 19.01% were positive for eggs of F. hepatica. The final model shows statistical evidence of associations between positive farms and previous cases of fasciolosis and concomitant grazing of cattle with other definitive hosts. In the evaluated farms from the studied municipality the prevalence of fasciolosis and Lymnaea was of 66.7% and 23.8%, respectively. Mollusks were found in flooded areas and the animals' drinking water troughs. The wide geographical distribution of bovine fasciolosis in the south of Espírito Santo requires control measures to prevent its expansion towards the north of this state and other places characterized as F. hepatica free-infection.

  8. Características agronômicas de seis genótipos de maracujazeiro-azedo cultivados no Distrito Federal Agronomic features of six genotypes of passion fruit cultivated in Distrito Federal, Brazil

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    Simone de Paula Miranda Abreu

    2009-09-01

    Full Text Available Este trabalho teve como objetivo avaliar as características agronômicas de seis genótipos de maracujazeiro-azedo cultivados no Distrito Federal. O experimento foi desenvolvido na área experimental da Fazenda Água Limpa da Universidade de Brasília, no DF. Utilizou-se o delineamento em blocos casualizados, com quatro repetições, seis tratamentos e sete plantas por parcela. Foram avaliados os genótipos: Rubi Gigante, EC-3-0, EC-L-7, RC-3, Redondão e Gigante Amarelo. Os parâmetros analisados, durante seis meses (17 colheitas, foram: produtividade total estimada, quantidade de frutos e coloração da casca. O genótipo Rubi Gigante teve a maior produtividade (16,69 t/ha-1, enquanto o RC-3 a menor (2,92 t/ha-1. Foram observados resultados semelhantes quanto às variáveis: produtividade total e quantidade de frutos de tamanho: primeira, 1B e 1A em relação aos seis genótipos. Não houve diferença significativa a 5%, pelo teste de Tukey, para: % de frutos de coloração amarela, rosa e roxa; massa fresca de frutos amarelos e rosas; quantidade de frutos rosas e roxos, e também quantidade de frutos de tamanho 2A e 3A em relação a todos os genótipos avaliados. Os genótipos Rubi Gigante, Redondão, EC-3-0 e EC-L-7 podem ser recomendados para o cultivo no DF e região geoeconômica, se confirmarem a superioridade quando avaliados por um maior período e em diferentes condições ambientais.This work had as objective to evaluate the agronomic features of six cultivated genotypes of passion fruit in the Distrito Federal. The experiment was developed in the experimental area of Fazenda Água Limpa (FAL UnB, Brasilia-DF. The experimental design was randomized blocks with four useful repetitions, with six treatments, and seven plants per parcel. The six genotypes that had been evaluated were: Rubi Gigante, EC-3-0, EC-L-7, RC-3, Redondão and Gigante Amarelo. The analyzed parameters, in a period of six months (17 harvests had been: total

  9. Caracterização de genótipos de trigo do bloco de cruzamento da Embrapa Trigo, RS, Brasil Characterization of wheat genotypes from the crossing block of the national wheat research center, RS, Brazil

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    Gilberto Peripolli Bevilaqua

    2003-10-01

    Full Text Available No Centro Nacional de Pesquisa de Trigo (CNPT - Embrapa Trigo, em 1999, genótipos de trigo integrantes do bloco de cruzamento foram avaliados quanto à altura de planta, à duração do ciclo até o espigamento, ao comprimento do pedúnculo e ao número de grãos por espiga. Relacionando essas características, foram estudados 122 genótipos em duas épocas de semeadura, que consistiram os blocos. Foram medidos dez pedúnculos do afilho principal, de cada genótipo, e contou-se o número total de grãos de cada espiga. Para a apresentação dos resultados, foram considerados os valores médios dessas avaliações. Para a análise estatística, considerou-se o experimento como blocos casualizados. Dos resultados obtidos, concluiu-se que os genótipos de trigo BR 18, BR 42 e Sonora 64 destacam-se por porte baixo e ciclo precoce, enquanto Florida 301 e "Trigo de chapéu" destacam-se por porte alto e ciclo longo até o espigamento. A altura de planta mostra elevada correlação com comprimento do pedúnculo e duração do ciclo até o espigamento, e esta, com o comprimento de pedúnculo. Os genótipos de trigo CNT 10 e PF 92130 são indicados com finalidades artesanais por suas características de pedúnculo longo e número de grãos por espiga acima da média. O estudo mostra grande variabilidade genotípica em trigo quanto às características avaliadas, fornecendo informações sobre os genótipos que poderão ser utilizados por melhoristas, técnicos e agricultores.Wheat genotypes from the crossing block were caracterized at the National Wheat Research Center (Embrapa Trigo in 1999. Plant traits evaluated were height, cycle up to heading, peduncle length, and number of grains per spike. One hundred and twenty-two genotypes were evaluated at two seeding dates that consisted blocks. For each tretament, ten peduncles from the main tiller were measured and the total number of grain in each spike was counted. The mean values obtained in such

  10. Acanthamoeba T4, T5 and T11 isolated from mineral water bottles in southern Brazil.

    Science.gov (United States)

    Maschio, Vinicius José; Chies, Fernanda; Carlesso, Ana Maris; Carvalho, Amanda; Rosa, Sayonara Peixoto; Van Der Sand, Sueli Teresinha; Rott, Marilise Brittes

    2015-01-01

    Acanthamoeba is a protist potential pathogen, capable of causing a blinding keratitis in contact lens wearers and disseminated infection, leading to granulomatous amebic encephalitis in immunocompromised individuals. This amoeba is a ubiquitous organism that has been isolated from various domestic water systems, such as cooling towers and hospital water networks. The objective of this work was to investigate the presence of Acanthamoeba in mineral water bottles marketed in Porto Alegre, southern Brazil. Positive samples were further classified at the genotype level after sequencing the ASA.S1 region of 18S rDNA gene. Six of the eight isolates belonged to T5 genotype, one to T4 genotype, and one was T11. Several genotypes have been reported worldwide as causative of pathologies in humans, including genotypes T4, T5 and T11. Overall, the widespread distribution of potentially pathogenic Acanthamoeba strains in the studied source demands more awareness within the public and health professionals, because this pathogen is emerging as a risk for human health worldwide.

  11. Temporal distribution of Aedes aegypti Linnaeus (Diptera, Culicidae, in a Hospital in Cuiabá, State of Mato Grosso, Brazil

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    Danilo de Carvalho-Leandro

    2010-01-01

    Full Text Available This study aimed at registering and monitoring the presence of Aedes aegypti in the University Hospital Júlio Muller, Cuiabá-MT, as well as investigating the influence of temperature and rainfall on its temporal distribution and egg densities in ovitraps. The study was performed from April/2007 to March/2008, utilizing ovitraps with 10% of hay infusion and a wood paddle as an oviposition substrate. For surveillance, one ovitrap was placed in each of the 12 points distributed throughout the hospital. Ovitraps were collected monthly at the end of a 5-day installation period. After egg counting, wood paddles were immersed in water to allow larval eclosion for species identification through optical microscopy. Egg Density Index (EDI, Positive Ovitraps Index (POI, and Mean Number of Eggs (MNE were used for data analysis. The presence of A. aegypti in the hospital was registered throughout the study period, except in July. The MNE was proportionally higher in the internal area (n= 8.47 eggs/paddle when compared to the external area (n= 5.46 eggs/paddle, and was higher in September/October 2007 and January/February 2008. A significant increase in EDI, POI and MNE was registered in periods where the average temperature was higher, and the increase in POI was also concomitant with an increase in rainfall. The continuous presence of A. aegypti in the hospital throughout the study period, points out the need of including this mosquito in the arthropod control list in this environment. This is particularly important, considering that A. aegypti is an important vector of several arboviroses.

  12. Distribution of histological diagnoses of black and white skin in Campinas, diseases Brazil, from 1993 to 2009

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    Isabela Mamere Alvarez

    2013-08-01

    Full Text Available INTRODUCTION: Little is known about ethnic differences in the frequency of skin diseases, and even less in terms of Brazilian population, which is characterized by miscegenation. OBJECTIVE: To evaluate the distribution of skin disorders in black and Caucasian patients through pathological specimens. METHODS: 826 biopsies from black-skinned individuals and 1,652 from white-skinned patients were retrieved and studied from the files of the Pathology Department, UNICAMP Hospital within the period of 1993-2009. The clinical data were obtained from medical records and the results were tested by statistical methods. RESULTS: Non-melanoma cancer was the most frequent diagnosis in Caucasians (45%, differing from the frequency among black patients (8%, both arising in sun-exposed skin. Regarding topography and age, in white-skinned patients aged over 50 years, biopsies of "head and neck" prevailed. As to black patients, the disease predominated among female individuals aged from 15 to 50 years and in the genital area. In the comparative analysis of vulvar diseases, we observed differences in diagnoses of sexually transmitted diseases more common among black women. Excluding cancers and genital lesions, black patients had a higher percentage of infectious diseases. Among the non-infectious diseases, cutaneous lupus was the most frequent diagnosis in both groups. Lichen planus and drug reactions were more frequent in black patients. CONCLUSION: Apart from intrinsic differences among skin types, social factors may interfere in the distribution of diseases. Not only may these results be useful to public health programs, but they may also aid the approach to dermatological diseases in black skin patients.

  13. Analysis of phenotype, genotype and serotype distribution in erythromycin-resistant group B streptococci isolated from vaginal flora in Southern Ireland.

    LENUS (Irish Health Repository)

    Kiely, R A

    2010-02-01

    The screening of 2000 women of childbearing age in Cork between 2004 and 2006 produced 37 erythromycin-resistant group B streptococcus (GBS) isolates. PCR analysis was performed to determine the basis for erythromycin resistance. The ermTR gene was most frequently expressed (n = 19), followed by the ermB gene (n = 8). Four isolates harboured the mefA gene. Six isolates yielded no PCR products. Some phenotype-genotype correlation was observed. All isolates expressing the mefA gene displayed the M phenotype whilst all those expressing ermB displayed the constitutive macrolide resistance (cMLS(B)) phenotype. Of 19 isolates that expressed the ermTR gene, 16 displayed the inducible macrolide resistance (iMLS(B)) phenotype. Serotype analysis revealed that serotypes III and V predominated in these isolates. The identification of two erythromycin-resistant serotype VIII isolates among this collection represents the first reported finding of erythromycin resistance in this serotype. A single isolate was non-typable using two latex agglutination serotyping kits.

  14. [Seasonal distribution of gill parasites in fishes from fee-fishing at Guariba, São Paulo State, Brazil].

    Science.gov (United States)

    Schalch, Sergio H C; Moraes, Flávio R de

    2005-01-01

    This study was accomplished with the objective of knowing the seasonal distribution of the main species of parasites causes of branchial damages to the fish from fee-fishing at Guariba, State of São Paulo. This city is situated at 21 degrees 15'22'' S, 48 degrees 18'58'' W, in altitude 595 meters. This research was conducted between April, 1997 to March, 1999. From 408 fishes examined, 29.1% of them were infested by the protozoans e metazoans. Leporinus macrocephalus showed the highest parasitism by Trichodina sp., although Piaractus mesopotamicus and Cyprinus carpio were also parasited. Piscinoodinium pillulare infestation were found in L. macrocephalus, P. mesopotamicus, C. carpio e Colossoma macropomum. Monogenetics metazoan have largely been observed in L. macrocephalus, P. mesopotamicus, C. carpio, C. macropomum e cross-bred tambacu. The incidence of this parasite was elevated in the summer for L. macrocephalus, spring for P. mesopotamicus and C. macropomum, and both seasons for cross-bred tambacu. Lernaea cyprinacea copepodes were observed in L. macrocephalus, P. mesopotamicus, C. carpio and cross- breeding tambacu, in spite of the fact that C. carpio has demonstrated high parasitism of adult form. The fish L. macrocephalus, P. mesopotamicus and C. carpio were sponged intensely by Dolops carvalhoi, in situation of high population density. Piaractus mesopotamicus was considered the species more parasited by myxosporídeos, that were also observed in L. macrocephalus and cross-breeding tambacu.

  15. Genotypes Distribution among Hepatitis B Virus Infectied Patients with Different Immune Statuses in Guangxi North Region%广西桂北地区HBV感染者不同免疫状态HBV基因型分布研究

    Institute of Scientific and Technical Information of China (English)

    杨丽莎; 吴淋玲; 蒋冬香; 王绩业; 黄亚琴

    2012-01-01

    In order to find out the distribution of Genotype of those people infected with HBV(hepatitis B virus )from north Guangxi and the relationship between different immune status of HBV infected people and their genotypes, the HBV infected people are classified into three types according to immune tolerance, immune clearance ( response ) and immune incompetence (residues) . 150 cases from each type, a total of 450 cases are chosen to be tested with real time fluorescence quantitative PCR assay for detection of HBV infection in three kinds of different immune state of the HBV genotype. In the 450 cases, 323 cases belong to type B, 94 cases belong to type B, 23 cases belong to mixed type B+C and 10 cases belong to none B and none C type. Type B are the majority in all the three HBV immunestatus, made up to 70%, 78% , 67. 33% of each type. The different immune state genotype proportion difference don't have statistical significance; immune state and genotypic correlation isn't statistically significant; type B HBV-DNA load is higher than that of type C, groups of persons aged 30 years or older with type C are significantly higher than that of < 30 years of age, the difference was statistically significant; among the genotypes of alanine aminotransferase ( ALT ) , aspartate aminotransferase ( AST ) , total bilirubin ( Tbil ) positive rate showed no significant difference between male and female; there was no significant difference in genotype distribution. The results show that, in North Guangxi HBV genotypes B, C accounts for the proportion, a small amount of B+C hybrid, occasionally fails to type HBV infection; among immune tolerance, immune clearance ( response ) and immune incompetence ( residues ) type B are in majority in these three kinds of immune state, chronic HBV infection immunity with the HBV genotype correlations were not statistically significant.%为了了解广西桂北地区乙型肝炎病毒(Hepatitis B Virus,HBV)感染者基因型分布情况及探

  16. Geographical distribution of American cutaneous leishmaniasis and its phlebotomine vectors (Diptera: Psychodidae in the state of São Paulo, Brazil

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    Baton Luke

    2010-12-01

    Full Text Available Abstract Background American cutaneous leishmaniasis (ACL is a re-emerging disease in the state of São Paulo, Brazil. It is important to understand both the vector and disease distribution to help design control strategies. As an initial step in applying geographic information systems (GIS and remote sensing (RS tools to map disease-risk, the objectives of the present work were to: (i produce a single database of species distributions of the sand fly vectors in the state of São Paulo, (ii create combined distributional maps of both the incidence of ACL and its sand fly vectors, and (iii thereby provide individual municipalities with a source of reference material for work carried out in their area. Results A database containing 910 individual records of sand fly occurrence in the state of São Paulo, from 37 different sources, was compiled. These records date from between 1943 to 2009, and describe the presence of at least one of the six incriminated or suspected sand fly vector species in 183/645 (28.4% municipalities. For the remaining 462 (71.6% municipalities, we were unable to locate records of any of the six incriminated or suspected sand fly vector species (Nyssomyia intermedia, N. neivai, N. whitmani, Pintomyia fischeri, P. pessoai and Migonemyia migonei. The distribution of each of the six incriminated or suspected vector species of ACL in the state of São Paulo were individually mapped and overlaid on the incidence of ACL for the period 1993 to 1995 and 1998 to 2007. Overall, the maps reveal that the six sand fly vector species analyzed have unique and heterogeneous, although often overlapping, distributions. Several sand fly species - Nyssomyia intermedia and N. neivai - are highly localized, while the other sand fly species - N. whitmani, M. migonei, P. fischeri and P. pessoai - are much more broadly distributed. ACL has been reported in 160/183 (87.4% of the municipalities with records for at least one of the six incriminated or

  17. Detection of Mayaro virus infections during a dengue outbreak in Mato Grosso, Brazil.

    Science.gov (United States)

    Vieira, Carla Julia da Silva Pessoa; Silva, David José Ferreira da; Barreto, Eriana Serpa; Siqueira, Carlos Eduardo Hassegawa; Colombo, Tatiana Elias; Ozanic, Katia; Schmidt, Diane Johnson; Drumond, Betânia Paiva; Mondini, Adriano; Nogueira, Maurício Lacerda; Bronzoni, Roberta Vieira de Morais

    2015-07-01

    Arboviruses are common agents of human febrile illness worldwide. In dengue-endemic areas illness due to other arboviruses have been misdiagnosed as dengue based only on clinical-epidemiological data. In this study we investigated the presence of Brazilian arboviruses in sera of 200 patients presenting acute febrile illness, during a dengue outbreak in Sinop, MT, Brazil. The results showed that 38 samples were positive to Dengue virus (DENV) type 1, two samples to DENV type 4, and six to Mayaro virus. These results indicate that arboviruses others than DENV are circulating in Sinop and the surrounding region, which are going undiagnosed. In addition, molecular and evolutionary analyses indicate that two MAYV genotypes are co-circulating in Mato Grosso, Brazil. Thus, a strong surveillance program must be implemented to evaluate and monitor the distribution and the true importance of non-dengue arboviruses in the etiology of acute febrile illnesses.

  18. Spatial distribution of the risk of dengue and the entomological indicators in Sumare, state of Sao Paulo, Brazil.

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    Gerson Laurindo Barbosa

    2014-05-01

    Full Text Available Dengue fever is a major public health problem worldwide, caused by any of four virus (DENV-1, DENV-2, DENV-3 and DENV-4; Flaviviridae: Flavivirus, transmitted by Aedes aegypti mosquito. Reducing the levels of infestation by A. aegypti is one of the few current strategies to control dengue fever. Entomological indicators are used by dengue national control program to measure the infestation of A. aegypti, but little is known about predictive power of these indicators to measure dengue risk. In this spatial case-control study, we analyzed the spatial distribution of the risk of dengue and the influence of entomological indicators of A. aegypti in its egg, larva-pupa and adult stages occurring in a mid-size city in the state of São Paulo. The dengue cases were those confirmed by the city's epidemiological surveillance system and the controls were obtained through random selection of points within the perimeter of the inhabited area. The values of the entomological indicators were extrapolated for the entire study area through the geostatistical ordinary kriging technique. For each case and control, the respective indicator values were obtained, according with its geographical coordinates and analyzed by using a generalized additive model. Dengue incidence demonstrated a seasonal behavior, as well as the entomological indicators of all mosquito's evolutionary stages. The infestation did not present a significant variation in intensity and was not a limiting or determining factor of the occurrence of cases in the municipality. The risk maps of the disease from crude and adjusted generalized additive models did not present differences, suggesting that areas with the highest values of entomological indicators were not associated with the incidence of dengue. The inclusion of other variables in the generalized additive models may reveal the modulatory effect for the risk of the disease, which is not found in this study.

  19. Genotypic variation among lineages of Trypanosoma cruzi and its geographic aspects.

    Science.gov (United States)

    Higo, Hiroo; Miura, Sachio; Horio, Masahiro; Mimori, Tatsuyuki; Hamano, Shinjiro; Agatsuma, Takeshi; Yanagi, Tetsuo; Cruz-Reyes, Arejandro; Uyema, Norma; Rojas de Arias, A; Matta, Vivian; Akahane, Hiroshige; Hirayama, Kenji; Takeuchi, Tsutomu; Tada, Isao; Himeno, Kunisuke

    2004-12-01

    Isozyme analysis with 18 enzyme loci was conducted on 146 isolates of Trypanosoma cruzi from Mexico, Guatemala, Colombia, Ecuador, Peru, Brazil, Bolivia, Paraguay and Chile. Forty-four different MLGs (groups of isolates with identical multilocus genotypes) were identified and a phylogeny was constructed. The phylogenetic tree consisted of two main groups (T. cruzi I, T. cruzi II), and the latter was further divided into two subgroups (T. cruzi IIa, T. cruzi IIb-e). Evidence of hybridization between different MLGs of T. cruzi II was found, which means that genetic exchanges seem to have occurred in South American T. cruzi. On the other hand, the persistence of characteristic T. cruzi I and T. cruzi II isozyme patterns in single small villages in Bolivia and Guatemala suggested that genetic exchange is very rare between major lineages. A significant difference in genetic diversity was shown between T. cruzi I and T. cruzi II from several indices of population genetics. Two possibilities could explain this genetic variation in the population: differences in evolutionary history and/or different tendencies to exchange genetic material. Broad-scale geographic distributions of T. cruzi I and T. cruzi IIb-e were different; T. cruzi I occurred in Central America and south to Bolivia and Brazil, while T. cruzi IIb-e occurred in the central and southern areas of South America, overlapping with T. cruzi I in Brazil and Bolivia.

  20. Modelos da distribuição temporal de chuvas intensas em Piracicaba, SP Time distribution models of intense rainfall in Piracicaba, SP, Brazil

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    Décio E. Cruciani

    2002-04-01

    Full Text Available O estudo da variação temporal de chuvas intensas é de grande importância na hidrologia, para a análise e previsão de eventos extremos, necessárias em projetos de controle de engenharia. Com esse objetivo, foram analisados dados de pluviogramas da cidade de Piracicaba, SP, do período de 1966 a 2000, para se determinar a distribuição temporal de chuvas intensas de 60 e de 120 min de duração. As chuvas de 60 min foram subdivididas em três intervalos iguais e sucessivos de 20 min cada um, enquanto as chuvas de 120 min foram subdivididas em quatro intervalos iguais e sucessivos de 30 min cada um. O modelo de distribuição da precipitação que predominou para as chuvas de 60 e 120 min, foi do tipo exponencial negativo, com 85,7 e 50,7% dos casos, respectivamente. Para as chuvas de 60 min, com altura pluviométrica média de 20,7 mm, a distribuição foi de 72,3, 21,4 e 6,2% do total precipitado, respectivamente, nos três intervalos sucessivos de 20 min. Para as chuvas de 120 min, com altura pluviométrica média de 33,3 mm, o resultado foi de 60,1, 25,2, 11,1 e 3,6%, respectivamente, nos quatro intervalos sucessivos de 30 min. O modelo de distribuição temporal dessas chuvas não foi modificado pelo total precipitado nem pela sua duração, nos intervalos em questão.Time distribution models of intense and short rains are very important in hydrology and for extreme predictions in engineering projects. With this purpose, rain data of Piracicaba, SP, Brazil, from 1966 to 2000 were analyzed to establish time distribution models of 60 and 120 min intense rains, during the rainy season from October through March. Time distribution models were assessed by three intervals of twenty minutes duration, for 60 min rains and by four intervals of thirty minutes duration for 120 min rains. The prevailing precipitation model for both, 60 and 120 min rains was a negative exponential distribution, in 85.7 and 50.7% of cases, respectively. For 60 min

  1. Serotype distribution of Streptococcus pneumoniae isolated from patients with invasive pneumococcal disease in Brazil before and after ten-pneumococcal conjugate vaccine implementation.

    Science.gov (United States)

    dos Santos, Silvia R; Passadore, Lilian F; Takagi, Elizabeth H; Fujii, Cristiane M; Yoshioka, Cristina R M; Gilio, Alfredo E; Martinez, Marina B

    2013-12-09

    The ten-pneumococcal conjugate vaccine (PCV10) was introduced into the national immunization program for childhood vaccination schedules by the Brazilian Health Public Service in March 2010. The aim of this study was to compare Streptococcus pneumoniae serotype distribution, antibiotic resistance patterns, and potential coverage before (January 2006-June 2010) and after (July 2010-September 2012) PCV10 introduction. The incidence of invasive pneumococcal disease (IPD), patient demographics, and disease characteristics were recorded. This study was conducted at the University Hospital of Sao Paulo University in Brazil from January 2006 to September 2012. Serotyping was performed using multiplex PCR typing, and antimicrobial sensitivity by Clinical and Laboratory Standards Institute (CLSI). A total of 259 S. pneumoniae strains were isolated from patients with IPD. The ages of the patients ranged from 3 months to 95 years old. The strains were isolated from cerebrospinal fluid, pleural fluid, and blood. The incidence of IPD among patients at HU-USP changed after the introduction of PCV10. The overall incidence of IPD was 3.42 cases per 1000 admissions in the vaccine pre- implementation period and of 2.99 cases per 1000 admissions in the vaccine post-implementation period. The incidence of IPD among children<2 y.o. attended at HU-USP changed significantly after the introduction of PCV10, from 20.30 to 3.97 of incidence. The incidence of PCV10- serotypes decrease from 16.47 to 0.44 in the same age, before and after PC10 implementation, respectively. Moreover, it was possible to realize the sensitivity to penicillin among isolates increased significantly in the post-vaccine period. Data from this study suggest that PCV10 contributed to decrease with PID rate among children less than 2 y.o. The resistance rate among pneumococcal isolates also could be observed since serotypes with greater resistance to beta lactam antibiotics were not easily isolated after vaccination.

  2. Detection of genotype-specific Ehrlichia canis exposure in Brazilian dogs by TRP36 peptide ELISA.

    Science.gov (United States)

    Aguiar, Daniel M; Zhang, Xiaofeng; Braga, Isis A; Taques, Isis I G G; McBride, Jere W

    2016-02-01

    We recently characterized a novel genotype of Ehrlichia canis based on the tandem repeat (TR) sequence of the TRP36 gene in Brazil. The TR amino acid sequence of the Brazilian (Br) genotype (ASVVPEAE) was divergent from the previously described US genotype (TEDSVSAPA) of E. canis. In this study, we developed an ELISA based on TRP36 TR synthetic peptides from both Br and US E. canis TRP36 genotypes to serologically detect and distinguish infections caused by these genotypes. Sera from 30 Brazilian dogs naturally infected with E. canis, sera from dogs experimentally infected E. canis (Jake and Cuiabá #1 strains) and E. chaffeensis (Arkansas strain) and 12 seronegative E. canis dogs were evaluated. Fifteen naturally infected Brazilian dogs had antibodies that reacted with the US TRP36 (n=9) or Br TRP36 (n=6) only, and 13 dogs had antibodies that reacted with both TPR36 peptides suggesting that these dogs were exposed to both genotypes. Most dogs (n=28) had antibodies that reacted with the highly conserved E. canis TRP19 peptide; however, two dogs had antibodies to E. canis TRP19, but did not have TRP36 antibodies, raising the possibility that another novel TRP36 genotype is circulating in Brazil. Our results demonstrate that synthetic peptides based on the TR region of E. canis TRP36 can be used to serologically distinguish infections or identify coinfections by different genotypes, and to determine the seroprevalence of various E. canis genotypes in Brazil.

  3. Distribution of stream macroalgal communities from the mid-western region of Paraná state, southern Brazil: importance of local scale variation

    Directory of Open Access Journals (Sweden)

    Ciro Cesar Zanini Branco

    2009-04-01

    Full Text Available Twenty-two stream segments, representing the diverse types of environments in the mid-western region of the Paraná State, southern Brazil, were sampled for occurrence of macroalgal communities from May to October in 2002. Twenty-seven macroalgal taxa were found, with Chlorophyta as the dominant algal group, followed by Cyanobacteria, Rhodophyta and Chrysophyta. The most widespread species was Phormidium retzii. Distribution was patchy, with species number per sampling sites ranging from zero to six and correlated positively with the abundance. On the other hand, no significant correlation was found among the species number and abundance with environmental variables. Results indicated wide and random variation among the streams. Thus, it seemed that the distribution of macroalgal communities in the study area responded more closely to the local-scale variation than the regional characteristics.Durante o período de maio a outubro de 2002, vinte e dois segmentos de riachos, representando os diversos tipos de ambientes da região centro-oeste do estado do Paraná, sul do Brasil, foram amostrados quanto à comunidade de macroalgas. Foram encontradas vinte e sete macroalgas. A divisão Chlorophyta foi o grupo algal predominante, seguido por Cyanobacteria, Rhodophyta e Chrysophyta. A espécie com melhor distribuição foi Phormidium retzii. Foi observado um padrão de distribuição em mosaico. O número de espécies por ponto de amostragem variou de zero a seis e correlacionou-se positivamente com abundância de espécies. Por outro lado, nenhuma outra correlação significativa foi encontrada entre número de espécies e abundância com as variáveis ambientais. Os resultados, suportados por dados de literatura, indicaram uma variação ampla e aleatória entre os riachos, sugerindo que a distribuição da comunidade de macroalgas na área de estudos parece responder mais fortemente a variações nas condições em escala local do que em escalas

  4. Calibration and parameterization of a semi-distributed hydrological model to support sub-daily ensemble flood forecasting; a watershed in southeast Brazil

    Science.gov (United States)

    de Almeida Bressiani, D.; Srinivasan, R.; Mendiondo, E. M.

    2013-12-01

    The use of distributed or semi-distributed models to represent the processes and dynamics of a watershed in the last few years has increased. These models are important tools to predict and forecast the hydrological responses of the watersheds, and they can subside disaster risk management and planning. However they usually have a lot of parameters, of which, due to the spatial and temporal variability of the processes, are not known, specially in developing countries; therefore a robust and sensible calibration is very important. This study conduced a sub-daily calibration and parameterization of the Soil & Water Assessment Tool (SWAT) for a 12,600 km2 watershed in southeast Brazil, and uses ensemble forecasts to evaluate if the model can be used as a tool for flood forecasting. The Piracicaba Watershed, in São Paulo State, is mainly rural, but has about 4 million of population in highly relevant urban areas, and three cities in the list of critical cities of the National Center for Natural Disasters Monitoring and Alerts. For calibration: the watershed was divided in areas with similar hydrological characteristics, for each of these areas one gauge station was chosen for calibration; this procedure was performed to evaluate the effectiveness of calibrating in fewer places, since areas with the same group of groundwater, soil, land use and slope characteristics should have similar parameters; making calibration a less time-consuming task. The sensibility analysis and calibration were performed on the software SWAT-CUP with the optimization algorithm: Sequential Uncertainly Fitting Version 2 (SUFI-2), which uses Latin hypercube sampling scheme in an iterative process. The performance of the models to evaluate the calibration and validation was done with: Nash-Sutcliffe efficiency coefficient (NSE), determination coefficient (r2), root mean square error (RMSE), and percent bias (PBIAS), with monthly average values of NSE around 0.70, r2 of 0.9, normalized RMSE of 0

  5. Influência do ambiente no rendimento e na qualidade de grãos de genótipos de trigo com irrigação por aspersão no Estado de São Paulo Environmental influence on grain yield and grain quality of wheat genotypes with sprinkler irrigation in the State of São paulo, Brazil

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    JOÃO CARLOS FELICIO

    2001-01-01

    Full Text Available Avaliaram-se a influência do ambiente em 20 genótipos de trigo, no rendimento e qualidade de grãos, a adaptabilidade e a reação a doenças, em regiões onde a irrigação se faz necessária para permitir o bom desempenho agronômico de um genótipo. Instalaram-se os experimentos em Tatuí, Votuporanga, Ribeirão Preto e Mococa, Estado de São Paulo, no período de 1995-98. Avaliaram-se, também, a tolerância dos genótipos ao alumínio tóxico em solução nutritiva e a qualidade industrial para panificação. Com bom rendimento de grãos destacaram-se: em Tatuí, os genótipos IAC 351, IAC 335, IAC 289 e Mochis; em Votuporanga, IAC 289, TUI"S" e SERI*3/BUC; em Ribeirão Preto e Mococa, o IAC 370. No conceito de genótipo ideal, o IAC 370 apresentou alta capacidade produtiva, foi responsivo à melhoria do ambiente e sensível às condições desfavoráveis do ambiente. Entre as doenças, a ferrugem-da-folha foi a de abrangência generalizada com maior incidência em Tatuí. Anahuac, IAC 287, CAL/CHKW//VEE"S" e IAC 370 foram os mais suscetíveis ao oídio. Os genótipos Anahuac, IAC 287, JCAM//EMU"S"/YACO"S", PFAU e IAC 339 foram os mais sensíveis à toxicidade por Al3+. Os genótipos Anahuac, IAC 24, IAC 287, IAC 289, IAC 334, PFAU, TUI"S", IAC 339, IAC 370 e IAC 351 apresentaram características de farinha com bom potencial para panificação.Environmental influence was evaluated in 20 wheat genotypes in relation to grain yield and quality, adaptability and disease reaction in regions where irrigation is necessary for good agronomical performance. The experiments were carried out at Tatuí, Votuporanga, Ribeirão Preto, and Mococa in the State of São Paulo, Brazil, during 1995-98. Genotypes were also evaluated for tolerance to aluminum toxicity in nutrient solutions and for industrial quality for bread production. The genotypes IAC 351, IAC 335, IAC 289 and Mochis presented high grain yield in Tatuí; IAC 289, TUI"S" and SERI*3/BUC in

  6. Identificação de Genótipos de Feijão-caupi Tolerantes a Acidez em um Latossolo Vermelho-Amarelo do Estado de Roraima = Identification of cowpea genotypes sensitivity to acidicy conditions in an Oxisol of Roraima State (Brazil.

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    Sandra Cátia Pereira Uchôa

    2007-12-01

    Full Text Available O presente trabalho foi realizado com o objetivo de identificar genótipos de feijão-caupi (Vigna unguiculata (L Walp., tolerantes à acidez. O trabalho foi realizado em casa de vegetação localizada no Campus do Cauamé, da Universidade Federal de Roraima, utilizando um Latossolo Vermelho-Amarelo de Boa Vista-RR. Foi adotado o delineamento experimental de Blocos Inteiramente Casualizados em esquema fatorial 2 x 5 x 10 com três repetições. Os tratamentos resultaram de duas formas de localização do calcário (localizada e não-localizada, 5 profundidades (0-5; 5-10; 10-15; 15-20; 20-25 cm e 10 genótipos de feijão-caupi(IT85D-3428-4-R2,4-HM; Apiaú; Hikari Graúdo; Pretinho Precoce 1; IT85D-3428-4-3-HP; USA; UFRR Grão Verde; BRS-Mazagão; Canapum e Sempre Verde. A unidade experimental foi constituída por 2dm3 de solo, dispostos em tubo de PVC com 25cm de altura,10cm de diâmetro e duas plantas de feijão. Os tubos foram confeccionados por meio da junção de 5 anéis com 5 cm cada, sendo que no anel inferior foi colocada uma placa delgada de isopor para permitir a acomodação do solo. Aos 40 dias após a emergência, as plantas foram coletadas, sendo determinada à produção de matéria seca das raízes e parte aérea. Os genótipos IT85D-3428-4-3-HP e UFRRGRÃO VERDE foram classificados como sendo de baixa tolerância, os genótipos USA, BRS-Mazagão, IT85D-3428-4-R2,4-HM e Sempre Verde, medianamente tolerantes e os genótipos Apiaú, Hikari Graúdo, Pretinho Precoce 1 e Canapum, tolerantes à acidez.= This research was carried out objecting to identify the sensibility of cowpea (Vigna unguiculata (L Walp genotypes to acidity conditions. The experiment was installed in a greenhouse located at Campus of Cauamé (Universidade Federal de Roraima in an oxisol of Roraima State (Brazil. The experimental design adopted was a completely andomized blocks in a factorial scheme 2 x 5 x 10 with three replicates. The terms of this factorial

  7. TRI12 based quantitative real-time PCR assays reveal the distribution of trichothecene genotype of F. graminearum and F. culmorum isolates in Danish small grain cereals

    DEFF Research Database (Denmark)

    Nielsen, L. K.; Jensen, J. D.; Rodríguez, A.;

    2012-01-01

    species complex, Fusarium culmorum, Fusarium cerealis and Fusarium pseudograminearum. These assays were applied on a total of 378 field samples of cereal grain of wheat, barley, triticale, rye and oats collected from 2003 to 2007 to study the trichothecene genotype composition in Danish cereals. The three...... in wheat. The NIV genotype was found at low levels in most samples. Study of genotype composition within the Danish F. graminearum and F. culmorum population was based on principal component analysis (PCA). PCA revealed that the dominating genotype of F. graminearum in wheat is 15ADON. For barley, the PCA...... analysis indicated that the F. graminearum population consisted of all three genotypes, and in triticale, the F. graminearum population consisted mainly of 15ADON genotype. F. culmorum/F. cerealis showed correlation to the NIV genotype in wheat and triticale but not in barley. F. culmorum/F. cerealis also...

  8. Propagação vegetativa de genótipos de pitangueira (Eugenia uniflora L. do Sul do Brasil por enxertia de garfagem Vegetative propagation of surinam cherry (Eugenia uniflora L. genotypes from Southern Brazil, through cleft graft

    Directory of Open Access Journals (Sweden)

    Rodrigo Cezar Franzon

    2010-03-01

    Full Text Available Este trabalho teve como objetivo avaliar o uso da enxertia de garfagem em fenda cheia na propagação vegetativa de diferentes genótipos de pitangueira. Foram utilizados sete genótipos do Banco Ativo de Germoplasma de fruteiras nativas do Sul do Brasil, mantidos na Embrapa Clima Temperado, em Pelotas-RS, dos quais foram coletados garfos (estacas semilenhosas, com aproximadamente 5 cm de comprimento. Utilizou-se como porta-enxertos de plantas de pitangueira oriundas de sementes. O diâmetro médio no ponto de enxertia foi de 2,5 mm. A enxertia foi realizada em setembro de 2006. O delineamento experimental foi o inteiramente casualizado, com quatro repetições, sendo a unidade experimental constituída por 10 plantas. Foram avaliadas as percentagens de brotação e de pegamento dos enxertos. Os percentuais de estacas brotadas variaram entre 45,0% e 95,0%, enquanto o pegamento dos enxertos variou entre 40,0% e 87,5%. Percentuais acima de 65,0% foram obtidos para as seleções "Pit 75", "Pit 61" e "Pit 137", para ambos os parâmetros avaliados, brotação e pegamento dos enxertos. Existe diferença entre genótipos desta espécie quanto à capacidade de pegamento na enxertia por garfagem no topo em fenda cheia. Este tipo de enxertia é apropriado para a propagação vegetativa da pitangueira.This work had the objective of testing cleft grafting as a way to asexually propagate different genotypes of Surinam cherry. Bud wood of around 5 cm length were collected from seven genotypes of the Germplasm Bank of Embrapa Clima Temperado, Pelotas, RS. Seedling plants of Surinam cherry seedlings were used as rootstocks. The average diameter at the grafting point was 2.5 mm. Grafting was done on September, 2006. The experiment was carried out as a completely randomized design with four replications and 10 plants per plot. Evaluations were based on percentage of obtained plants in relation to the total number of grafts and percentage of grafts with leaf burst

  9. Interação genótipo x ambiente em cultivares de alface na região de Jaboticabal Interaction genotype x environment of lettuce cultivars in Jaboticabal, Brazil

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    Eduardo B. de Figueiredo

    2004-03-01

    Full Text Available Estudou-se a interação genótipo x ambiente de doze cultivares de alface, sendo quatro do grupo lisa (Babá de Verão, Karla, Nacional e Elisa, quatro do grupo crespa (Simpson, Hortência, Verônica e Grand Rapids e quatro do grupo americana (Laidy, Tainá, Lucy Brown e Raider. Os tratamentos foram constituídos pelo cultivo da alface em dez ambientes (casa de vegetação, túnel baixo de cultivo, túnel baixo com sombrite, agrotêxtil e campo, na presença e ausência de mulching. Foram utilizados dois períodos de cultivo, agosto a novembro de 2001 e março a junho de 2002 em Jaboticabal. Cada experimento (ambiente de cultivo foi conduzido utilizando-se o delineamento de blocos casualizados, com doze cultivares e três repetições. A análise de variância conjunta demonstrou valores de F significativos (pWe evaluated the interaction genotype x environment of twelve genotypes of lettuce (Babá de Verão, Karla, Nacional, Elisa, Simpson, Hortência, Verônica, Grand Rapids, Laidy, Tainá, Lucy Brown and Raider, cultivated under greenhouse, low tunnel, low tunnel covered with black plastic screen, floating row cover (light-weight woven and open field. All these treatments were conducted with and without mulching with ten treatments in total. The experiments were conducted in two different periods (August to November, 2001 and March to June, 2002. Each experiment (growth environment was conducted using randomized blocks and three replicates. The measured variables were dry matter, volume and number of leaves. The value of F was significant (p<0,01 for the interaction genotype x environment. For the planting period from August to November/2001, the best results were obtained with the butterhead cultivars (Babá de Verão, Karla, Nacional, Elisa, cultivated under greenhouse with mulching, low tunnel without mulching and field without mulching. All cultivars had the worst performance when cultivated under tunnel with black plastic screen with or

  10. Desempenho agronômico de genótipos de girassol no norte de Minas Gerais = Agronomic performance of sunflower genotypes in the north of Minas Gerais, Brazil.

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    Danúbia Aparecida Costa Nobre

    2012-08-01

    Full Text Available O girassol (Helianthus annuus L. encontra-se entre as quatro culturas de maior produção de óleo comestível no mundo, e destaca-se pela sua adaptação a diferentes condições edafoclimáticas. Objetivou-se com este estudo avaliar o desempenho agronômico de dez genótipos de girassol no norte de Minas Gerais. O estudo foi conduzido nas Fazendas Experimentais da Empresa de Pesquisa Agropecuária de Minas Gerais (Epamig, nos municípios de Jaíba, distrito de Mocambinho e NovaPorteirinha. Fez-se a avaliação do desempenho agronômico destes genótipos analisando as seguintes características: floração inicial, altura das plantas, diâmetro da haste, número de folhas,circunferência do capítulo, estande final e rendimento de grãos. Os dados coletados foram submetidos à análise de variância e ao teste de Scott-Knott a 5% de probabilidade. Houve variação em todos os parâmetros avaliados no comportamento agronômico dos genótipos, os quais apresentaram bom desempenho quando cultivados em Mocambinho e Nova Porteirinha, no norte de Minas Gerais. Os genótipos avaliados apresentam ciclo precoce, exceto o SYN 039A, com ciclo médio. Com a redução do ciclo da cultura, observa-se também redução na maioria das variáveis avaliadas.The sunflower (Helianthus annuus L. is one of the four cultures of the largest production of edible oil worldwide, and stands out for its adaptation to different edafoclimatic conditions. The objective of this study was to evaluate the agronomic performance of ten cultivars of sunflower in northern Minas Gerais. The study was conducted at the Experimental Farms of the Agricultural Research Company of Minas (Epamig in the municipalities of Jaíba, District of Mocambinho and Nova Porteirinha. The agronomic perfomance of these genotypes was evaluated by reviewing these characteristics: initial flowering,plant height, stem diameter, leaf number, circumference of the chapter, final stand, and yield. The data

  11. Spotlight: Brazil.

    Science.gov (United States)

    Carter, M

    1996-08-01

    Brazil is South America's largest country and home to nearly half of the continent's people. Despite solid economic growth, Brazil has one of the world's widest income disparities. In the early 1990s, nearly 40% of urban and 66% of rural Brazilians lived in poverty. The streets of Brazil's cities are home to a large population of street children. Although it is difficult to estimate, 10 million children and youths may be either homeless or making a meager living off of the streets. Street children may be linked to prostitution and drugs and be the targets or perpetrators of violence. Child labor is an issue in Brazil. Today an estimated 30% of rural children and 9% of urban children ages 10-13 work in the formal economy. In some rural areas, 60% of workers are ages 5-17. Child labor also contributes to Brazil's relatively low educational attainment levels. UNICEF estimates that around 1990 only 1/3 of all Brazilian children continued on to secondary school, compared to 74% and 47%, respectively, for the Latin America and Caribbean regions. Immunization rates among Brazil's children are rising but still lag slightly behind regional averages. The mortality rate for children under age 5 decreased dramatically from 181 deaths for every 1000 live births in 1960 to 61/1000 in 1994. During the same time period, the average number of children born to a woman during her lifetime dropped from 6.2 to 2.8. This fertility decline is related in part to increased access to and acceptance of family planning. Contraceptive prevalence, including traditional and modern methods, is around 66%, with female sterilization and the pill being the most popular methods. Brazil's abortion rates are high, despite laws limiting access to abortion services. One estimate suggests that about 30% of all pregnancies are terminated through abortion each year.

  12. Hepatitis B virus genotypes and hepatocellular carcinoma in Thailand

    Institute of Scientific and Technical Information of China (English)

    Pisit Tangkijvanich; Varocha Mahachai; Piyawat Komolmit; Juthatip Fongsaru; Apiradee Theamboonlers; Yong Poovorawan

    2005-01-01

    AIM: The role of hepatitis B virus (HBV) genotypes on the clinical features and prognosis of patients with hepatocellular carcinoma (HCC) is currently unknown. The aim of the present study was to evaluate the distribution of HBV genotypes and their clinical relevance in Thai patients.METHODS: HBV genotypes were determined by PCR-RFLP in stored sera of 93 asymptomatic carriers, 103 patients with chronic hepatitis, 60 patients with cirrhosis and 76patients with HCC. The clinical data were analyzed in relation to the HBV genotype.RESULTS: HBV genotypes C and B were predominant in Thailand, accounting for 73% and 21%, respectively. The distributions of genotypes B and C were similar in HCC patients compared to the other groups. Genotype C was significantly more common in HCC patients who were under 40 years old than genotype B (18% vs 0%, P= 0.03), but was significantly less common in patients older than 60 years (26% vs 56.5%, P= 0.01). The positive rate of hepatitis B e antigen (HBeAg) in patients with genotype C was significantly higher than that in patients with genotype B (71.6% vs 44.4%, P = 0.03 in chronic hepatitis; 56.8% vs 11.1%,P = 0.01 in cirrhosis). There were no differences between HCC patients with genotypes B and C regarding tumor staging by CLIP criteria and the overall median survival. Multivariate analyses showed that HBV genotype was not an independent prognostic factor of survival in HCC patients.CONCLUSION: Patients with genotype C had a higher positive rate of HBeAg and exhibited earlier progression of cirrhosis and HCC than those with genotype B. However,there were no differences in the risk of developing HCC and its prognosis between patients with these genotypes.

  13. Dengue virus type 3 in Brazil: a phylogenetic perspective

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    Josélio Maria Galvão de Araújo

    2009-05-01

    Full Text Available Circulation of a new dengue virus (DENV-3 genotype was recently described in Brazil and Colombia, but the precise classification of this genotype has been controversial. Here we perform phylogenetic and nucleotide-distance analyses of the envelope gene, which support the subdivision of DENV-3 strains into five distinct genotypes (GI to GV and confirm the classification of the new South American genotype as GV. The extremely low genetic distances between Brazilian GV strains and the prototype Philippines/L11423 GV strain isolated in 1956 raise important questions regarding the origin of GV in South America.

  14. Topologia do risco de acidentes do trabalho em Piracicaba, SP Spatial distribution of risks for work-related injuries in a city of Southeastern e Brazil

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    Lia Thieme Oikawa Zangirolani

    2008-04-01

    Full Text Available OBJETIVO: Analisar a distribuição espacial do risco de acidente do trabalho controlado por variáveis nutricionais e outras co-variáveis. MÉTODOS: Estudo caso-controle espacial de base hospitalar, tendo como variável de interesse a localização espacial dos acidentes do trabalho. Foram amostrados 794 trabalhadores, no período de maio a outubro de 2004. Os critérios de inclusão para casos (N=263 foram: ser trabalhador acidentado do trabalho, morador de Piracicaba, com idade entre 15 e 60 anos, e atendido em centro de ortopedia e traumatologia. Os controles (N=531 tiveram o mesmo critério de idade e residência na cidade, exceto que o acidente não era do trabalho, tendo sido considerandos também trabalhadores acompanhantes dos casos. A distribuição espacial da estimativa baseou-se no ajuste do modelo aditivo generalizado, tendo as coordenadas geográficas dos casos e controles como componente espacial não linear e as demais co-variáveis como componente linear. RESULTADOS: A variação da estimativa do risco espacial de acidentes do trabalho, controlada por sexo (OR=1,87; pOBJECTIVE: To assess spatial distribution of risks for work-related injuries controlled for nutritional variables and other covariables. METHODS: Hospital-based spatial case-control study with work-related injuries spatial distribution as the main variable of interest. A total of 794 workers were selected between May and October 2004. Inclusion criteria for cases (N=263 were: worker with work-related injury; living in Piracicaba (Southeastern Brazil; age between 15 and 60 years old; and cared at an orthopedics and trauma center. Controls (N=531 met the same criteria for age and residence, but had non-work-related injuries and workers accompanying cases were included as well. Spatial distribution was estimated by adjusting a generalized additive model with geographical coordinates of cases and controls as spatial non-linear component and the remaining covariables

  15. Evolution of garnet distribution, shape and composition in high-grade pelitic migmatites of Salvador da Bahia, Brazil: insights from LA-ICP-MS trace element mapping

    Science.gov (United States)

    Goncalves, Philippe; Raimondo, Tom; Santos de Souza, Jailma

    2016-04-01

    Garnet is a widely used mineral in metamorphic petrology and more particularly for thermobarometric modelling to reconstruct the P-T-t evolution of Earth's crust. This is due to its ubiquity in high grade rocks (T > 450°C), its occurrence in many assemblages of interest for thermobarometry, and mostly to its ability to preserve chemical zoning. Two types of zoning are distinguished: growth and diffusion zoning. Growth zoning reflects crystallisation coeval with changes in P-T conditions or bulk composition. This type of zoning is therefore particularly useful to unravel the P-T evolution of open systems and determine the growth mechanisms involved. However, growth zoning in major elements is commonly altered by processes such as volume diffusion, which is particularly efficient at high temperatures and for elements like Fe or Mg that have high diffusion coefficients. In such cases, information that relates to the environmental conditions of garnet growth is either totally or partially obliterated. To minimise the impact of this process on growth zoning and retain useful information, trace elements are more appropriate because of their lower diffusion coefficients compared to major elements. In this study, the distribution of trace elements in garnet has been imaged using an emerging LA-ICP-MS mapping technique. This is achieved by rastering of the focused laser beam in linear transects, which are then stitched together by post-acquisition processing to form a quantified or semi-quantified image of the trace element distribution, with excellent detection limits (ppb) over a wide isotopic range (7Li to 238U) and minimal sample preparation required. This technique has been applied to high-grade pelitic gneisses and migmatites from the Paleoproterozoic Itabuna-Salvador-Curaça belt (adjacent to the Farol da Bara, Salvador da Bahia, Brazil). Structurally, it is located in a steeply-dipping high strain zone that may have played a major role in the segregation and

  16. Distribuição espacial da mortalidade por tuberculose em Salvador, Bahia, Brasil Spatial distribution of tuberculosis mortality in Salvador, Bahia, Brazil

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    Fábio Frias Mota

    2003-08-01

    Full Text Available Com o objetivo de descrever a distribuição espacial da mortalidade por tuberculose em Salvador nos anos de 1991, 1994 e 1997, foi realizado um estudo ecológico, descritivo, tendo como unidade de análise o Distrito Sanitário (DS. Foram calculados os coeficientes padronizados de mortalidade por tuberculose e a mortalidade proporcional por tuberculose, em relação ao conjunto das doenças infecciosas e parasitárias, utilizando-se as declarações de óbitos como fonte de dados. O DS com os maiores coeficientes padronizados foi o Subúrbio Ferroviário, com taxas de 15,7, 10,6 e 10,6/100 mil habitantes, em 1991, 1994 e 1997, respectivamente. Em 1997, foram observadas as menores taxas padronizadas. A mortalidade proporcional por tuberculose em Salvador, nos anos de 1991, 1994 e 1997, representou 20,7%, 18,2 % e 16,9%, respectivamente, do total das mortes por doenças infecciosas e parasitárias. A faixa etária de maior risco, nos anos estudados, foi aquela acima de 65 anos. Os autores discutem as possibilidades de utilização dos resultados deste estudo para a implementação de políticas locais de saúde equânimes e desenvolvimento de operações de vigilância da saúde, tendo em vista a identificação de DS com maior risco de óbito e as faixas etárias mais acometidas.An ecological study was conducted to describe the urban spatial distribution of mortality attributable to tuberculosis in Salvador, Bahia, Brazil in 1991, 1994, and 1997. The unit of analysis was the Health District (HD. The HD with the highest standardized rates was Subúrbio Ferroviário in 1991, 1994, and 1997, with 15.7, 10.6, and 10.6/100.000 inhabitants, respectively. Inequalities in mortality between HDs were high. The year 1997 showed the lowest standardized rates. The proportional mortality ratios for tuberculosis when compared with total deaths from infectious diseases were 20.7%, 18.2%, and 16.9% for 1991, 1994, and 1997 respectively. The highest rates were

  17. megasat: automated inference of microsatellite genotypes from sequence data.

    Science.gov (United States)

    Zhan, Luyao; Paterson, Ian G; Fraser, Bonnie A; Watson, Beth; Bradbury, Ian R; Nadukkalam Ravindran, Praveen; Reznick, David; Beiko, Robert G; Bentzen, Paul

    2017-03-01

    megasat is software that enables genotyping of microsatellite loci using next-generation sequencing data. Microsatellites are amplified in large multiplexes, and then sequenced in pooled amplicons. megasat reads sequence files and automatically scores microsatellite genotypes. It uses fuzzy matches to allow for sequencing errors and applies decision rules to account for amplification artefacts, including nontarget amplification products, replication slippage during PCR (amplification stutter) and differential amplification of alleles. An important feature of megasat is the generation of histograms of the length-frequency distributions of amplification products for each locus and each individual. These histograms, analogous to electropherograms traditionally used to score microsatellite genotypes, enable rapid evaluation and editing of automatically scored genotypes. megasat is written in Perl, runs on Windows, Mac OS X and Linux systems, and includes a simple graphical user interface. We demonstrate megasat using data from guppy, Poecilia reticulata. We genotype 1024 guppies at 43 microsatellites per run on an Illumina MiSeq sequencer. We evaluated the accuracy of automatically called genotypes using two methods, based on pedigree and repeat genotyping data, and obtained estimates of mean genotyping error rates of 0.021 and 0.012. In both estimates, three loci accounted for a disproportionate fraction of genotyping errors; conversely, 26 loci were scored with 0-1 detected error (error rate ≤0.007). Our results show that with appropriate selection of loci, automated genotyping of microsatellite loci can be achieved with very high throughput, low genotyping error and very low genotyping costs.

  18. AMMI analysis to evaluate the adaptability and phenotypic stability of sugarcane genotypes

    Directory of Open Access Journals (Sweden)

    Luís Cláudio Inácio da Silveira

    2013-02-01

    Full Text Available Sugarcane (Saccharum sp. is one of the most important crops in Brazil. The high demand for sugarcane-derived products has stimulated the expansion of sugarcane cultivation in recent years, exploring different environments. The adaptability and the phenotypic stability of sugarcane genotypes in the Minas Gerais state, Brazil, were evaluated based on the additive main effects and multiplicative interaction (AMMI method. We evaluated 15 genotypes (13 clones and two checks: RB867515 and RB72454 in nine environments. The average of two cuttings for the variable tons of pol per hectare (TPH measure was used to discriminate genotypes. Besides the check RB867515 (20.44 t ha-1, the genotype RB987935 showed a high average TPH (20.71 t ha-1, general adaptability and phenotypic stability, and should be suitable for cultivation in the target region. The AMMI method allowed for easy visual identification of superior genotypes for each set of environments.

  19. Genotype and environment interaction on soybean yield in Mato Grosso State, Brazil Interação de genótipos com ambientes e produtividade da soja no Estado do Mato Grosso, Brasil

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    José Francisco Ferraz de Toledo

    2006-05-01

    Full Text Available The objective of this work was to investigate the genotype-environment interaction in Mato Grosso State, MT. The relative importance of locations, years, sowing dates and cultivars and their interactions was analyzed from data collected in regional yield trials performed in a randomized complete block design with four replications, from 1994-1995 through 1999-2000, in nine locations and two sowing dates. Individual and pooled analyses of variance over years and locations were performed. Complementary analyses of variances partitioned MT State in two main and five smaller regions, respectively: North and South of Cuiabá; and MT-South-A (Pedra Preta area, MT-South-B (Rondonópolis and Itiquira, MT-East (Primavera do Leste and Campo Verde, MT-Central (Nova Mutum, Lucas do Rio Verde and Sorriso and MT-Parecis (Campo Novo dos Parecis and Sapezal. Locations are relatively more important than years for yield testing soybeans in the MT State, therefore, investment should be made in increasing locations rather than years to improve experimental precision. Partitioning the MT State into regions has little impact on soybean yield testing results and, consequently, on the efficiency of the soybean breeding program in the State. Breeding genotypes with broad adaptation for the MT State is an efficient strategy for cultivar development.O objetivo deste trabalho foi investigar a interação de genótipos com ambientes no Estado do Mato Grosso, MT. Locais, anos, épocas de semeadura, cultivares e respectivas interações foram analisados em relação a dados de produtividade de grãos de ensaios regionais realizados em delineamento de blocos completos casualizados, conduzidos de 1994-1995 a 1999-2000, em nove locais e duas épocas de semeadura. Análises de variâncias individuais e conjuntas de anos e locais foram efetuadas. Análises complementares foram realizadas, dividindo o Estado em duas regiões principais e cinco regiões menores, respectivamente

  20. Avian nephritis virus (ANV) on Brazilian chickens farms: circulating genotypes and intra-genotypic diversity.

    Science.gov (United States)

    Espinoza, Luis Luna; Beserra, Laila A R; Soares, Rodrigo M; Gregori, Fabio

    2016-12-01

    Avian nephritis virus (ANV), which belongs to the family Astroviridae, is associated with different clinical manifestations (including enteric disorders). Despite being frequently found in the avian industry worldwide, information regarding genetic features of these viruses in Brazil is scarce. Therefore, sixty fecal sample pools (5-6 birds of the same flock), representing 60 poultry farms from six Brazilian States, were screened using an astrovirus-specific hemi-nested-PCR assay targeting the conserved ORF1b gene, followed by nucleotide sequencing of amplified products. PCR and phylogenetic analysis confirmed the detection of 21 positive samples to ANV (35 %). In order to investigate the genetic diversity represented by these viruses, amplification, cloning and phylogenetic analysis of the deduced amino acid sequence of ORF2 gene were attempted. Eight samples were successfully cloned (generating 32 clones in total) and sequenced. Based on phylogenetic analysis of OR