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Sample records for brassinosteroid upregulated1 encoding

  1. nana plant2 Encodes a Maize Ortholog of the Arabidopsis Brassinosteroid Biosynthesis Gene DWARF1, Identifying Developmental Interactions between Brassinosteroids and Gibberellins1[OPEN

    Science.gov (United States)

    Budka, Josh; Fujioka, Shozo; Johal, Gurmukh

    2016-01-01

    A small number of phytohormones dictate the pattern of plant form affecting fitness via reproductive architecture and the plant’s ability to forage for light, water, and nutrients. Individual phytohormone contributions to plant architecture have been studied extensively, often following a single component of plant architecture, such as plant height or branching. Both brassinosteroid (BR) and gibberellin (GA) affect plant height, branching, and sexual organ development in maize (Zea mays). We identified the molecular basis of the nana plant2 (na2) phenotype as a loss-of-function mutation in one of the two maize paralogs of the Arabidopsis (Arabidopsis thaliana) BR biosynthetic gene DWARF1 (DWF1). These mutants accumulate the DWF1 substrate 24-methylenecholesterol and exhibit decreased levels of downstream BR metabolites. We utilized this mutant and known GA biosynthetic mutants to investigate the genetic interactions between BR and GA. Double mutants exhibited additivity for some phenotypes and epistasis for others with no unifying pattern, indicating that BR and GA interact to affect development but in a context-dependent manner. Similar results were observed in double mutant analyses using additional BR and GA biosynthetic mutant loci. Thus, the BR and GA interactions were neither locus nor allele specific. Exogenous application of GA3 to na2 and d5, a GA biosynthetic mutant, also resulted in a diverse pattern of growth responses, including BR-dependent GA responses. These findings demonstrate that BR and GA do not interact via a single inclusive pathway in maize but rather suggest that differential signal transduction and downstream responses are affected dependent upon the developmental context. PMID:27288361

  2. nana plant2 Encodes a Maize Ortholog of the Arabidopsis Brassinosteroid Biosynthesis Gene DWARF1, Identifying Developmental Interactions between Brassinosteroids and Gibberellins.

    Science.gov (United States)

    Best, Norman B; Hartwig, Thomas; Budka, Josh; Fujioka, Shozo; Johal, Gurmukh; Schulz, Burkhard; Dilkes, Brian P

    2016-08-01

    A small number of phytohormones dictate the pattern of plant form affecting fitness via reproductive architecture and the plant's ability to forage for light, water, and nutrients. Individual phytohormone contributions to plant architecture have been studied extensively, often following a single component of plant architecture, such as plant height or branching. Both brassinosteroid (BR) and gibberellin (GA) affect plant height, branching, and sexual organ development in maize (Zea mays). We identified the molecular basis of the nana plant2 (na2) phenotype as a loss-of-function mutation in one of the two maize paralogs of the Arabidopsis (Arabidopsis thaliana) BR biosynthetic gene DWARF1 (DWF1). These mutants accumulate the DWF1 substrate 24-methylenecholesterol and exhibit decreased levels of downstream BR metabolites. We utilized this mutant and known GA biosynthetic mutants to investigate the genetic interactions between BR and GA. Double mutants exhibited additivity for some phenotypes and epistasis for others with no unifying pattern, indicating that BR and GA interact to affect development but in a context-dependent manner. Similar results were observed in double mutant analyses using additional BR and GA biosynthetic mutant loci. Thus, the BR and GA interactions were neither locus nor allele specific. Exogenous application of GA3 to na2 and d5, a GA biosynthetic mutant, also resulted in a diverse pattern of growth responses, including BR-dependent GA responses. These findings demonstrate that BR and GA do not interact via a single inclusive pathway in maize but rather suggest that differential signal transduction and downstream responses are affected dependent upon the developmental context. PMID:27288361

  3. Brassinosteroids: synthesis and biological activities

    Czech Academy of Sciences Publication Activity Database

    Oklešťková, Jana; Rárová, Lucie; Kvasnica, Miroslav; Strnad, Miroslav

    2015-01-01

    Roč. 14, č. 6 (2015), s. 1053-1072. ISSN 1568-7767 R&D Projects: GA MŠk(CZ) LO1204 Institutional support: RVO:61389030 Keywords : Brassinosteroids * Chemical synthesis * Plant biological activity Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.407, year: 2014

  4. Anabolic effect of plant brassinosteroid

    OpenAIRE

    Esposito, Debora; KOMARNYTSKY, SLAVKO; Shapses, Sue; Raskin, Ilya

    2011-01-01

    Brassinosteroids are plant-derived polyhydroxylated derivatives of 5a-cholestane, structurally similar to cholesterol-derived animal steroid hormones and insect ecdysteroids, with no known function in mammals. 28-Homobrassinolide (HB), a steroidal lactone with potent plant growth-promoting property, stimulated protein synthesis and inhibited protein degradation in L6 rat skeletal muscle cells (EC50 4 μM) mediated in part by PI3K/Akt signaling pathway. Oral administration of HB (20 or 60 mg/kg...

  5. The chemical characteristic and distribution of brassinosteroids in plants

    OpenAIRE

    Bajguz, Andrzej; Tretyn, Andrzej

    2003-01-01

    Brassinosteroids represent a class of plant hormones with high-growth promoting activity. They are found at low levels in pollen, anthers, seeds, leaves, stems, roots, flowers, grain, and young vegetative tissues throughout the plant kingdom. Brassinosteroids are a family of about 60 phytosteroids. The article gives a comprehensive survey on the hitherto known brassinosteroids isolated from plants. The chemical characteristic of brassinosteroids is also presented.

  6. Anticancer and antiproliferative activity of natural brassinosteroids

    Czech Academy of Sciences Publication Activity Database

    Malíková, J.; Swaczynová, Jana; Kolář, Z.; Strnad, Miroslav

    2008-01-01

    Roč. 69, č. 2 (2008), s. 418-426. ISSN 0031-9422 Institutional research plan: CEZ:AV0Z50380511 Keywords : Brassinosteroids * Anticancer activity * Cell cycle Subject RIV: CE - Biochemistry Impact factor: 2.946, year: 2008

  7. Hormone profiles in microalgae: Gibberellins and brassinosteroids

    Czech Academy of Sciences Publication Activity Database

    Stirk, W. A.; Balint, P.; Tarkowská, Danuše; Novák, Ondřej; Strnad, Miroslav; Ördög, V.; van Staden, J.

    2013-01-01

    Roč. 70, č. 2013 (2013), s. 348-353. ISSN 0981-9428 Grant ostatní: GA MŠk(CZ) ED0007/01/01 Institutional research plan: CEZ:AV0Z50380511 Keywords : Brassinolide * Brassinosteroids * Castasterone Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.352, year: 2013

  8. Regulation of Brassinosteroid Biosynthesis and Inactivation

    Institute of Scientific and Technical Information of China (English)

    Baolin Zhao; Jia Li

    2012-01-01

    Brassinosteroids (BRs) are a group of naturally-occurring steroidal phytohormones playing fundamental roles during normal plant growth and development.Using a combination of experimental approaches,including analytical chemistry,genetics,and biochemistry,the major BR biosynthetic pathway has been largely elucidated.The least-understood knowledge in the BR research field is probably the molecular mechanisms controlling the bioactive levels of BRs in response to various developmental and environmental cues.In this review,we focus our discussion on a recently-proposed,8-step predominant BR biosynthetic pathway,several newly-identified transcription factors regulating the expression of key enzymes that catalyze BR biosynthesis,and up-to-date information about the mechanisms that plants use to inactivate unnecessary BRs.

  9. Brassinosteroids are involved in controlling sugar unloading in Vitis vinifera 'Cabernet Sauvignon' berries during véraison.

    Science.gov (United States)

    Xu, Fan; Xi, Zhu-Mei; Zhang, Hui; Zhang, Cheng-Jun; Zhang, Zhen-Wen

    2015-09-01

    Sugar unloading in grape berries is a crucial step in the long-distance transport of carbohydrates from grapevine leaves to berries. Brassinosteroids (BRs) mediate many physiological processes in plants including carbohydrate metabolism. Here, 'Cabernet Sauvignon' (Vitis vinifera L.) grape berries cultivated in clay loam fields were treated with an exogenous BR (24-epibrassinolide; EBR), a BR synthesis inhibitor (brassinazole; Brz), Brz + EBR (sprayed with EBR 24 h after a Brz treatment), and deionized water (control) at the onset of véraison. The EBR treatment sharply increased the soluble sugars content in the berries, but decreased it in the skins. The EBR and Brz + EBR treatments significantly promoted the activities of both invertases (acidic and neutral) and sucrose synthase (sucrolytic) at various stages of ripening. The mRNA levels of genes encoding sucrose metabolic invertase (VvcwINV), and monosaccharide (VvHT3, 4, 5 and 6) and disaccharide (VvSUC12 and 27) transporters were increased by the EBR and/or Brz + EBR treatments. Generally, the effects of the Brz treatment on the measured targets contrasted with the effects of the EBR treatments. The EBR and Brz treatments inhibited the biosynthesis of the endogenous BRs 6-deoxocastastarone and castasterone. Both EBR and Brz + EBR treatments increased the brassinolide contents, down-regulated the expression of genes encoding BRs biosynthetic enzymes BRASSINOSTEROID-6-OXIDASE and DWARF1, (VvBR6OX1 and VvDWF1) and induced BR receptor gene BRASSINOSTEROID INSENSITIVE 1 (VvBRI1) expression in deseeded berries. Together, these results show that BRs are involved in controlling sugar unloading in grape berries during véraison. PMID:26113159

  10. Brassinosteroids: Synthesis and activity of some fluoro analogues

    Czech Academy of Sciences Publication Activity Database

    Slavíková, Barbora; Kohout, Ladislav; Buděšínský, Miloš; Swaczynová, Jana; Kasal, Alexander

    2008-01-01

    Roč. 51, č. 13 (2008), s. 3979-3984. ISSN 0022-2623 R&D Projects: GA AV ČR IAA400550609 Institutional research plan: CEZ:AV0Z40550506; CEZ:AV0Z50380511 Keywords : brassinosteroids * fluoro analogues Subject RIV: CC - Organic Chemistry Impact factor: 4.898, year: 2008

  11. The synthesis of brassinosteroids, a new class of plant hormones

    Science.gov (United States)

    Lakhvich, Fedor A.; Khripach, Vladimir A.; Zhabinskii, Vladimir N.

    1991-06-01

    Data on methods of synthesis of brassinosteroids are correlated. In view of their extremely low reported content in nature, the role of chemical synthesis from other natural steroids as the main source of obtaining these hormones for detailed study and practical use is assessed. The bibliography contains 224 references.

  12. Effect of some brassinosteroids on yield and quality of soybeans

    Czech Academy of Sciences Publication Activity Database

    Klouček, P.; Štranc, P.; Havlík, J.; Erhartová, D.; Lapčík, O.; Kohout, Ladislav

    2006-01-01

    Roč. 11, č. 1 (2006), s. 137-138. ISSN 0860-4088. [ESA Congress /9./. Warszawa, 04.09.2006-07.09.2006] Institutional research plan: CEZ:AV0Z40550506 Keywords : brassinosteroids * soybeans * yield * protein content Subject RIV: CC - Organic Chemistry

  13. Identification of brassinosteroid responsive genes in Arabidopsis by cDNA array

    Institute of Scientific and Technical Information of China (English)

    HU; Yuxin; (

    2001-01-01

    cdc5+ homolog of a higher plant, Arabidopsis thaliana, Proc. Natl. Acad. Sci. USA, 1996, 93: 13371-13376.[15]Javerzat, J. P., Cranston, G., Allshire, R. C., Fission yeast genes which disrupt mitotic chromosome segregation when overexpressed, Nucl. Acids Res., 1996, 24: 4676-4683.[16]Dhaubhadel, S., Chaudhary, S., Dobinson, K. F. et al., Treatment with 24-epibrassinolide, a brassinosteroid, increases the basic thermotolerance of Brassica napus and tomato seedlings, Plant Mol. Biol., 1999, 40: 333-342.[17]Beato, M., Herrlich, P., Schytz, G., Steroid hormone receptors: many actors in search of a plot, Cell, 1995, 83: 153-156.[18]Chou, I. T., Gasser, C. S., Characterization of the cyclophilin gene family of Arabidopsis thaliana and physiologenetic analysis of known cyclophilin proteins, Plant Mol. Biol., 1997, 35: 873-892.[19]Sykes, K., Gething, M. J., Sambrook, J., Proline isomerases function during heat shock, Proc. Natl. Acad. Sci. USA, 1993, 90: 5853-5857.[20]Marivet, J., Frendo, P., Burkard, G., DNA sequence analysis of a cyclophilin gene from maize: developmental expression and regulation by salicylic acid, Mol. Gen. Genet., 1995, 247: 222-228.[21]Kagaya, Y., Ohmiya, K., Hattori, T., RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plant, Nucleic Acids Res., 1999, 27: 470-478.[22]Neff, M. M., Nguyen, S. M., Malancharuvil, E. J. et al., BAS1: a gene regulating brassinosteroid levels and light responsiveness in Arabidopsis, Proc. Natl. Acad. Sci. USA, 1999, 96: 15316-15323.[23]Chory, J., Nagpal, P., Peto, C. A., Phenotypic and genetic analysis of det2, a new mutant that affects light-regulated seedling development in Arabidopsis, Plant Cell, 1991, 3: 445-459.[24]Papenbrock, J., Grafe, S., Kruse, E. et al., Mg2+-chelatase of tobacco: identification of a ChlD cDNA sequence encoding a third subunit, analysis of the interaction of the three

  14. Regulation of ACS protein stability by cytokinin and brassinosteroid

    OpenAIRE

    Hansen, Maureen; Chae, Hyun Sook; Kieber, Joseph J.

    2008-01-01

    A major question in plant biology is how phytohormone pathways interact. Here, we explore the mechanism by which cytokinins and brassinosteroids affect ethylene biosynthesis. Ethylene biosynthesis is regulated in response to a wide variety of endogenous and exogenous signals, including the levels of other phytohormones. Cytokinins act by increasing the stability of a subset of ACC synthases, which catalyze the generally rate-limiting step in ethylene biosynthesis. The induction of ethylene by...

  15. Brassinosteroid perception in the epidermis controls root meristem size

    OpenAIRE

    Hacham, Yael; Holland, Neta; Butterfield, Cristina; Ubeda-Tomas, Susana; Bennett, Malcolm J.; Chory, Joanne; Savaldi-Goldstein, Sigal

    2011-01-01

    Multiple small molecule hormones contribute to growth promotion or restriction in plants. Brassinosteroids (BRs), acting specifically in the epidermis, can both drive and restrict shoot growth. However, our knowledge of how BRs affect meristem size is scant. Here, we study the root meristem and show that BRs are required to maintain normal cell cycle activity and cell expansion. These two processes ensure the coherent gradient of cell progression, from the apical to the basal meristem. In add...

  16. Brassinosteroid action in flowering plants: a Darwinian perspective

    OpenAIRE

    Kutschera, Ulrich; Wang, Zhi-Yong

    2012-01-01

    The year 2012 marks the 150th anniversary of the publication of Charles Darwin's first botanical book, on the fertilization of orchids (1862), wherein he described pollen grains and outlined his evolutionary principles with respect to plant research. Five decades later, the growth-promoting effect of extracts of Orchid pollen on coleoptile elongation was documented. These studies led to the discovery of a new class of phytohormones, the brassinosteroids (BRs) that were isolated from rapeseed ...

  17. Heterodimerization and endocytosis of Arabidopsis brassinosteroid receptors BRI1 and AtSERK3 (BAK1)

    NARCIS (Netherlands)

    Russinova, E.T.; Borst, J.W.; Kwaaitaal, M.A.C.J.; Yanhai Yin, Y.; Caño-Delgrado, A.; Chory, J.; Vries, de S.C.

    2004-01-01

    In Arabidopsis thaliana brassinosteroid (BR), perception is mediated by two Leu-rich repeat receptor-like kinases, BRASSINOSTEROID INSENSITIVE1 (BRI1) and BRI1-ASSOCIATED RECEPTOR KINASE1 (BAK1) (Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR-like KINASE3 [AtSERK3]). Genetic, biochemical, and yeast (Sac

  18. Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.

    Science.gov (United States)

    Petridis, Antonios; Döll, Stefanie; Nichelmann, Lars; Bilger, Wolfgang; Mock, Hans-Peter

    2016-08-01

    Flavonoid synthesis is predominantly regulated at the transcriptional level through the MYB-basic helix-loop-helix (bHLH)-WD40 (MBW) (MYB: transcription factor of the myeloblastosis protein family, WD40: tanscription factor with a short structural motif of 40 amino acids which terminates in an aspartic acid-tryptophan dipeptide) complex, and responds to both environmental and developmental stimuli. Although the developmental regulation of flavonoid accumulation in Arabidopsis thaliana has been examined in great detail, the response of the flavonoid synthesis pathway to abiotic stress (particularly low temperature) remains unclear. A screen of a Dissociation element (Ds) transposon-induced mutation collection identified two lines which exhibited an altered profile of phenylpropanoid accumulation following exposure to low-temperature stress. One of the mutated genes (BRASSINOSTEROID ENHANCED EXPRESSION1 (BEE1)) encoded a brassinosteroid enhanced expression transcription factor, while the other (G2-LIKE FLAVONOID REGULATOR (GFR)) encoded a G2-like flavonoid regulator. Phenylpropanoid-targeted analysis was performed using high-performance LC-MS, and gene expression analysis using quantitative reverse transcription-PCR. In both mutants, the accumulation of quercetins and scopolin was reduced under low-temperature growing conditions, whereas that of anthocyanin was increased. BEE1 and GFR were both shown to negatively regulate anthocyanin accumulation by inhibiting anthocyanin synthesis genes via the suppression of the bHLH (TRANSPARENT TESTA8 (TT8) and GLABROUS3 (GL3)) and/or the MYB (PRODUCTION OF ANTHOCYANIN PIGMENTS2 (PAP2)) components of the MBW complex. Our results provide new insight into the regulatory control of phenylpropanoid metabolism at low temperatures, and reveal that BEE1 and GFR act as important components of the signal transduction chain. PMID:27125220

  19. Homeostasis of Brassinosteroids Regulated by DRL1, a Putative Acyltransferase in Arabidopsis

    Institute of Scientific and Technical Information of China (English)

    Wenjiao Zhu; Haijiao Wang; Shozo Fujioka; Tao Zhou; Hailong Tian; Weisheng Tian; Xuelu Wang

    2013-01-01

    Brassinosteroids (BRs) play essential roles in regulating various aspects of plant growth and development and in responding to diverse environmental cues,and their metabolism is an important way to regulate their homeostasis in plants.Here,we identified a dominant mutant,dwarf and round leaf-1 (drll-D),which exhibits weak BR-deficient or BR-insensitive mutant phenotypes,including short and round leaves,prolonged senescence,dwarfed shape,and altered expression levels of the BR-responsive genes.Hypocotyl length and root inhibition assays suggest that the drll-D mutant responds to BRs normally,but has decreased BR signaling outputs.The endogenous levels of several BRs,including typhasterol (TY),6-deoxotyphasterol (6-deoxoTY),and 6-deoxocastasterone (6-deoxoCS),are significantly lower in the drll-D mutant than in the wild-type.The DRL1 gene encodes an acyltransferase and is widely expressed in leaves,roots,flowers,and siliques.Plants without DRL1 and its homologs are larger with an enhanced BR signaling.The expression of DRL1 was induced by eBL and inhibited by ABA.DRL1 is involved in the BR metabolism likely by catalyzing the BR conjugation through esterification,which plays important roles in regulating the BR homeostasis and responding to abiotic stresses in Arabidopsis.

  20. Isolation and Characterization of the Brassinosteroid Receptor Gene (GmBRI1) from Glycine max

    OpenAIRE

    Wang, Miao; Sun, Shi; Wu, Cunxiang; Han, Tianfu; Wang, Qingyu

    2014-01-01

    Brassinosteroids (BRs) constitute a group of steroidal phytohormones that contribute to a wide range of plant growth and development functions. The genetic modulation of BR receptor genes, which play major roles in the BR signaling pathway, can create semi-dwarf plants that have great advantages in crop production. In this study, a brassinosteroid insensitive gene homologous with AtBRI1 and other BRIs was isolated from Glycine max and designated as GmBRI1. A bioinformatic analysis revealed th...

  1. Isolation and Characterization of the Brassinosteroid Receptor Gene (GmBRI1) from Glycine max

    OpenAIRE

    Miao Wang; Shi Sun; Cunxiang Wu; Tianfu Han; Qingyu Wang

    2014-01-01

    Brassinosteroids (BRs) constitute a group of steroidal phytohormones that contribute to a wide range of plant growth and development functions. The genetic modulation of BR receptor genes, which play major roles in the BR signaling pathway, can create semi-dwarf plants that have great advantages in crop production. In this study, a brassinosteroid insensitive gene homologous with AtBRI1 and other BRIs was isolated from Glycine max and designated as GmBRI1. A bioinformatic analysis revealed t...

  2. Review: Post-translational cross-talk between brassinosteroid and sucrose signaling.

    Science.gov (United States)

    Kühn, Christina

    2016-07-01

    A direct link has been elucidated between brassinosteroid function and perception, and sucrose partitioning and transport. Sucrose regulation and brassinosteroid signaling cross-talk at various levels, including the well-described regulation of transcriptional gene expression: BZR-like transcription factors link the signaling pathways. Since brassinosteroid responses depend on light quality and quantity, a light-dependent alternative pathway was postulated. Here, the focus is on post-translational events. Recent identification of sucrose transporter-interacting partners raises the question whether brassinosteroid and sugars jointly affect plant innate immunity and plant symbiotic interactions. Membrane permeability and sensitivity depends on the number of cell surface receptors and transporters. More than one endocytic route has been assigned to specific components, including brassinosteroid-receptors. The number of such proteins at the plasma membrane relies on endocytic recycling, internalization and/or degradation. Therefore, vesicular membrane trafficking is gaining considerable attention with regard to plant immunity. The organization of pattern recognition receptors (PRRs), other receptors or transporters in membrane microdomains participate in endocytosis and the formation of specific intracellular compartments, potentially impacting biotic interactions. This minireview focuses on post-translational events affecting the subcellular compartmentation of membrane proteins involved in signaling, transport, and defense, and on the cross-talk between brassinosteroid signals and sugar availability. PMID:27181949

  3. The Role of Brassinosteroids in the Development of Sorghum

    Directory of Open Access Journals (Sweden)

    William Sutherlin

    2012-01-01

    Full Text Available Current day seed sorghum stocks contain up to fourdwarf genes that minimize the size of vegetative partsand increase harvest index. To date, only the d3 dwarfgene has been characterized molecularly. The geneencodes a homolog of the Arabidopsis and maize ABCtransporter ABCB1, which is associated with polartransport of the plant growth hormone auxin. Themechanism behind the other dwarf mutations is currentlyunknown. Brassinosteroids (BRs have a profound effect ondevelopment of monocot species, as they are involved in celldivision, cell elongation, and sex determination. Mutationsin the biosynthesis or the reception of BRs result in shorter,stunted plants (dwarf. This project aims to determine therole of BRs in growth and development of sorghum.We developed a strategy to phenocopy a BR mutantby treating sorghum plants (Tx623 with the potentbrassinosteroid inhibitor propiconazole (PCZ. PCZis a chemical inhibitor of the rate-limiting step of BRbiosynthesis in plants. The compound is also usedcommercially as fungicide to treat turf grass diseases.After analyzing the growth retardation effect of PCZ, weperformed a phenotypic screen in a mutagenized sorghumcollection provided by Professors Clifford Weil andMitchell Tuinstra (Department of Agronomy.The results showed that the PCZ-treated plants hadreduced height (61% and 33% of control for 100μM PCZand 500μM PCZ, respectively and tiller number (control= 4.6, 100μM PCZ = 3.3, 500μM PCZ = 1.4. Surprisingly,yield (8.5g = control, 19.3g = 100μM PCZ, 20.7g = 500μMPCZ and harvest indices (seed yield/total biomass(control = 0.09, 100μM PCZ = 0.31, 500μM PCZ = 0.38were significantly greater in PCZ-treated plants.

  4. Arabidopsis PIZZA has the capacity to acylate brassinosteroids.

    Directory of Open Access Journals (Sweden)

    Katja Schneider

    Full Text Available Brassinosteroids (BRs affect a wide range of developmental processes in plants and compromised production or signalling of BRs causes severe growth defects. To identify new regulators of plant organ growth, we searched the Arabidopsis FOX (Full-length cDNA Over-eXpressor gene collection for mutants with altered organ size and isolated two overexpression lines that display typical BR deficient dwarf phenotypes. The phenotype of these lines, caused by an overexpression of a putative acyltransferase gene PIZZA (PIZ, was partly rescued by supplying exogenous brassinolide (BL and castasterone (CS, indicating that endogenous BR levels are rate-limiting for the growth of PIZ overexpression lines. Our transcript analysis further showed that PIZ overexpression leads to an elevated expression of genes involved in BR biosynthesis and a reduced expression of BR inactivating hydroxylases, a transcriptional response typical to low BR levels. Taking the advantage of relatively high endogenous BR accumulation in a mild bri1-301 background, we found that overexpression of PIZ results in moderately reduced levels of BL and CS and a strong reduction of typhasterol (TY and 6-deoxocastasterone (6-deoxoCS, suggesting a role of PIZ in BR metabolism. We tested a set of potential substrates in vitro for heterologously expressed PIZ and confirmed its acyltransferase activity with BL, CS and TY. The PIZ gene is expressed in various tissues but as reported for other genes involved in BR metabolism, the loss-of-function mutants did not display obvious growth phenotypes under standard growth conditions. Together, our data suggest that PIZ can modify BRs by acylation and that these properties might help modulating endogenous BR levels in Arabidopsis.

  5. Brassinosteroid enhances resistance to fusarium diseases of barley.

    Science.gov (United States)

    Ali, Shahin S; Kumar, G B Sunil; Khan, Mojibur; Doohan, Fiona M

    2013-12-01

    Fusarium pathogens are among the most damaging pathogens of cereals. These pathogens have the ability to attack the roots, seedlings, and flowering heads of barley and wheat plants with disease, resulting in yield loss and head blight disease and also resulting in the contamination of grain with mycotoxins harmful to human and animal health. There is increasing evidence that brassinosteroid (BR) hormones play an important role in plant defense against both biotic and abiotic stress agents and this study set out to determine if and how BR might affect Fusarium diseases of barley. Application of the epibrassinolide (epiBL) to heads of 'Lux' barley reduced the severity of Fusarium head blight (FHB) caused by Fusarium culmorum by 86% and reduced the FHB-associated loss in grain weight by 33%. Growth of plants in soil amended with epiBL resulted in a 28 and 35% reduction in Fusarium seedling blight (FSB) symptoms on the Lux and 'Akashinriki' barley, respectively. Microarray analysis was used to determine whether growth in epiBL-amended soil changed the transcriptional profile in stem base tissue during the early stages of FSB development. At 24 and 48 h post F. culmorum inoculation, there were 146 epiBL-responsive transcripts, the majority being from the 48-h time point (n = 118). Real-time reverse-transcription polymerase chain reaction analysis validated the results for eight transcripts, including five defense genes. The results of gene expression studies show that chromatin remodeling, hormonal signaling, photosynthesis, and pathogenesis-related genes are activated in plants as a result of growth in epiBL. PMID:23777406

  6. Brassinosteroids cause cell cycle arrest and apoptosis of human breast cancer cells

    Czech Academy of Sciences Publication Activity Database

    Steigerová, J.; Oklešťková, Jana; Levková, M.; Rárová, Lucie; Kolář, Z.; Strnad, Miroslav

    2010-01-01

    Roč. 188, č. 3 (2010), s. 487-496. ISSN 0009-2797 R&D Projects: GA ČR GA301/08/1649 Institutional research plan: CEZ:AV0Z50380511 Keywords : Brassinosteroids * cause * cell Subject RIV: FD - Oncology ; Hematology Impact factor: 2.832, year: 2010

  7. Evaluation of biological activity of androstane brassinosteroids with 17beta-ester groups

    Czech Academy of Sciences Publication Activity Database

    Šíša, Miroslav; Hniličková, Jaroslava; Swaczynová, Jana; Kohout, Ladislav; Strnad, Miroslav

    Bialystok : University of Bialystok, 2005, s. 94. [Conference on Isoprenoids /21./. Bialowieza (PL), 23.09.2005-29.09.2005] R&D Projects: GA AV ČR(CZ) IBS4055304 Institutional research plan: CEZ:AV0Z40550506 Keywords : brassinosteroids * synthesis * SAR Subject RIV: CC - Organic Chemistry

  8. Brassinosteroids and water stress in rape (.I.Brassica napus./I. L.)

    Czech Academy of Sciences Publication Activity Database

    Vlašánková, E.; Kohout, Ladislav; Hradilík, J.

    2003-01-01

    Roč. 97, - (2003), s. s310. ISSN 0009-2770. [Conference on Isoprenoids /20./. 12.09.2003-18.09.2003, Liberec] R&D Projects: GA ČR GA203/01/0083; GA AV ČR IAA4055204 Institutional research plan: CEZ:AV0Z4055905 Keywords : brassinosteroids * water stress Subject RIV: CC - Organic Chemistry

  9. Genetic analyses of interactions among gibberellin, abscisic acid, and brassinosteroids in the control of flowering time in Arabidopsis thaliana.

    Directory of Open Access Journals (Sweden)

    Malgorzata A Domagalska

    Full Text Available BACKGROUND: Genetic interactions between phytohormones in the control of flowering time in Arabidopsis thaliana have not been extensively studied. Three phytohormones have been individually connected to the floral-timing program. The inductive function of gibberellins (GAs is the most documented. Abscisic acid (ABA has been demonstrated to delay flowering. Finally, the promotive role of brassinosteroids (BRs has been established. It has been reported that for many physiological processes, hormone pathways interact to ensure an appropriate biological response. METHODOLOGY: We tested possible genetic interactions between GA-, ABA-, and BR-dependent pathways in the control of the transition to flowering. For this, single and double mutants deficient in the biosynthesis of GAs, ABA, and BRs were used to assess the effect of hormone deficiency on the timing of floral transition. Also, plants that over-express genes encoding rate-limiting enzymes in each biosynthetic pathway were generated and the flowering time of these lines was investigated. CONCLUSIONS: Loss-of-function studies revealed a complex relationship between GAs and ABA, and between ABA and BRs, and suggested a cross-regulatory relation between GAs to BRs. Gain-of-function studies revealed that GAs were clearly limiting in their sufficiency of action, whereas increases in BRs and ABA led to a more modest phenotypic effect on floral timing. We conclude from our genetic tests that the effects of GA, ABA, and BR on timing of floral induction are only in partially coordinated action.

  10. Functional Characterization of Soybean Glyma04g39610 as a Brassinosteroid Receptor Gene and Evolutionary Analysis of Soybean Brassinosteroid Receptors

    Science.gov (United States)

    Peng, Suna; Tao, Ping; Xu, Feng; Wu, Aiping; Huo, Weige; Wang, Jinxiang

    2016-01-01

    Brassinosteroids (BR) play important roles in plant growth and development. Although BR receptors have been intensively studied in Arabidopsis, the BR receptors in soybean remain largely unknown. Here, in addition to the known receptor gene Glyma06g15270 (GmBRI1a), we identified five putative BR receptor genes in the soybean genome: GmBRI1b, GmBRL1a, GmBRL1b, GmBRL2a, and GmBRL2b. Analysis of their expression patterns by quantitative real-time PCR showed that they are ubiquitously expressed in primary roots, lateral roots, stems, leaves, and hypocotyls. We used rapid amplification of cDNA ends (RACE) to clone GmBRI1b (Glyma04g39160), and found that the predicted amino acid sequence of GmBRI1b showed high similarity to those of AtBRI1 and pea PsBRI1. Structural modeling of the ectodomain also demonstrated similarities between the BR receptors of soybean and Arabidopsis. GFP-fusion experiments verified that GmBRI1b localizes to the cell membrane. We also explored GmBRI1b function in Arabidopsis through complementation experiments. Ectopic over-expression of GmBRI1b in Arabidopsis BR receptor loss-of-function mutant (bri1-5 bak1-1D) restored hypocotyl growth in etiolated seedlings; increased the growth of stems, leaves, and siliques in light; and rescued the developmental defects in leaves of the bri1-6 mutant, and complemented the responses of BR biosynthesis-related genes in the bri1-5 bak1-D mutant grown in light. Bioinformatics analysis demonstrated that the six BR receptor genes in soybean resulted from three gene duplication events during evolution. Phylogenetic analysis classified the BR receptors in dicots and monocots into three subclades. Estimation of the synonymous (Ks) and the nonsynonymous substitution rate (Ka) and selection pressure (Ka/Ks) revealed that the Ka/Ks of BR receptor genes from dicots and monocots were less than 1.0, indicating that BR receptor genes in plants experienced purifying selection during evolution. PMID:27338344

  11. ‘Candidatus Liberibacter asiaticus’, Causal Agent of Citrus Huanglongbing, Is Reduced by Treatment with Brassinosteroids

    OpenAIRE

    Canales, Eduardo; Coll, Yamilet; Hernández, Ingrid; Portieles, Roxana; Rodríguez García, Mayra; López, Yunior; Aranguren, Miguel; Alonso, Eugenio; Delgado, Roger; Luis, Maritza; Batista, Lochy; Paredes, Camilo; Rodríguez, Meilyn; Pujol, Merardo; Ochagavia, María Elena

    2016-01-01

    Huanglongbing (HLB) constitutes the most destructive disease of citrus worldwide, yet no established efficient management measures exist for it. Brassinosteroids, a family of plant steroidal compounds, are essential for plant growth, development and stress tolerance. As a possible control strategy for HLB, epibrassinolide was applied to as a foliar spray to citrus plants infected with the causal agent of HLB, ‘Candidatus Liberibacter asiaticus’. The bacterial titers were reduced after treatme...

  12. The effects of brassinosteroid on the induction of biochemical changes in Lycopersicon esculentum under drought stress

    OpenAIRE

    BEHNAMNIA, Mehri; KALANTARI, Khosrow Manouchehri; ZIAIE, Jalal

    2009-01-01

    Drought stress is considered a restricting factor for plant products; therefore many compounds were applied to minimise the harmful effects of stress. One type of these compounds that have antioxidative characteristics is brassinosteroids. In this experiment, when 4 fully expanded leaves of tomato plants appeared, 24-epibrassinolide (24-EBL) was sprayed onto the leaves at 0.01 and 1 µM concentrations for 3 days with a 1-day interval. Three levels of drought stress (0, 3, and 5 days withholdin...

  13. Interaction of Brassinosteroids and Polyamines Enhances Copper Stress Tolerance in Raphanus Sativus

    OpenAIRE

    Choudhary, Sikander Pal; Oral, H. Volkan; Bhardwaj, Renu; Yu, Jing-Quan; Tran, Lam-Son Phan

    2012-01-01

    Brassinosteroids (BRs) and polyamines (PAs) regulate various responses to abiotic stress, but their involvement in the regulation of copper (Cu) homeostasis in plants exposed to toxic levels of Cu is poorly understood. This study provides an analysis of the effects of exogenously applied BRs and PAs on radish (Raphanus sativus) plants exposed to toxic concentrations of Cu. The interaction of 24-epibrassinolide (EBR, an active BR) and spermidine (Spd, an active PA) on gene expression and the p...

  14. Versatile roles of brassinosteroid in plants in the context of its homoeostasis, signaling and crosstalks

    OpenAIRE

    Saini, Shivani; Sharma, Isha; Pati, Pratap Kumar

    2015-01-01

    Brassinosteroids (BRs) are a class of steroidal plant hormones that play diverse roles in plant growth and developmental processes. Recently, the easy availability of biological resources, and development of new molecular tools and approaches have provided the required impetus for deeper understanding of the processes involved in BRs biosynthesis, transport, signaling and degradation pathways. From recent studies it is also evident that BRs interact with other phytohormones such as auxin, cyt...

  15. Impact of brassinosteroids on the effectivity of phytoremediation of polyhalogenated aromatics

    Czech Academy of Sciences Publication Activity Database

    Holečková, Marcela; Uhlík, Ondřej; Kohout, Ladislav; Macková, M.; Burkhard, J.; Macek, Tomáš

    Praha: VŠCHT Praha, 2007 - (Macková, M.; Macek, T.; Demnerová, K.; Pazlar, V.). s. 50 ISBN 978-80-7080-025-6. [Symposium on Biosorption and Bioremediation /4./. 26.08.2007-30.08.2007, Praha] R&D Projects: GA MŠk(CZ) OC 117; GA MŠk 2B06151 Institutional research plan: CEZ:AV0Z40550506 Keywords : phytoremediation * polychlorinated biphenyls * brassinosteroids Subject RIV: EI - Biotechnology ; Bionics

  16. Abscisic acid, gibberellins and brassinosteroids in Kelpak (R), a commercial seaweed extract made from Ecklonia maxima

    Czech Academy of Sciences Publication Activity Database

    Stirk, W. A.; Tarkowská, Danuše; Turečková, Veronika; Strnad, Miroslav; van Staden, J.

    2014-01-01

    Roč. 26, č. 1 (2014), s. 561-567. ISSN 0921-8971 R&D Projects: GA MŠk LK21306; GA ČR GA206/09/1284; GA MŠk(CZ) LO1204 Grant ostatní: GA MŠk(CZ) ED0007/01/01 Institutional support: RVO:61389030 Keywords : Abscisic acid * Agricultural biostimulant * Brassinosteroids Subject RIV: EF - Botanics Impact factor: 2.559, year: 2014

  17. Mechanisms of natural brassinosteroid-induced apoptosis of prostate cancer cells

    Czech Academy of Sciences Publication Activity Database

    Steigerová, J.; Rárová, L.; Oklešťková, Jana; Křížová, K.; Levková, M.; Šváchová, M.; Kolář, Z.; Strnad, Miroslav

    2012-01-01

    Roč. 50, č. 11 (2012), s. 4068-4076. ISSN 0278-6915 R&D Projects: GA ČR GA301/08/1649 Grant ostatní: GA MŠk(CZ) ED0007/01/01; GA AV ČR(CZ) IAA400550801 Institutional research plan: CEZ:AV0Z50380511 Keywords : Apoptosis * Brassinosteroids * Cell cycle Subject RIV: FD - Oncology ; Hematology Impact factor: 3.010, year: 2012

  18. Arabidopsis brassinosteroid biosynthetic mutant dwarf7-1 exhibits slower rates of cell division and shoot induction

    Directory of Open Access Journals (Sweden)

    Schulz Burkhard

    2010-12-01

    Full Text Available Abstract Background Plant growth depends on both cell division and cell expansion. Plant hormones, including brassinosteroids (BRs, are central to the control of these two cellular processes. Despite clear evidence that BRs regulate cell elongation, their roles in cell division have remained elusive. Results Here, we report results emphasizing the importance of BRs in cell division. An Arabidopsis BR biosynthetic mutant, dwarf7-1, displayed various characteristics attributable to slower cell division rates. We found that the DWARF4 gene which encodes for an enzyme catalyzing a rate-determining step in the BR biosynthetic pathways, is highly expressed in the actively dividing callus, suggesting that BR biosynthesis is necessary for dividing cells. Furthermore, dwf7-1 showed noticeably slower rates of callus growth and shoot induction relative to wild-type control. Flow cytometric analyses of the nuclei derived from either calli or intact roots revealed that the cell division index, which was represented as the ratio of cells at the G2/M vs. G1 phases, was smaller in dwf7-1 plants. Finally, we found that the expression levels of the genes involved in cell division and shoot induction, such as PROLIFERATING CELL NUCLEAR ANTIGEN2 (PCNA2 and ENHANCER OF SHOOT REGENERATION2 (ESR2, were also lower in dwf7-1 as compared with wild type. Conclusions Taken together, results of callus induction, shoot regeneration, flow cytometry, and semi-quantitative RT-PCR analysis suggest that BRs play important roles in both cell division and cell differentiation in Arabidopsis.

  19. Cloning and Expression Analysis of a Brassinosteroid Biosynthetic Enzyme Gene, GhDWF1, from Cotton (Gossypium hirsuturm L.)

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Brassinosteroids (BRs) are an important class of plant steroidal hormones that are essential in a wide variety of physiological processes. To determine the effects of BRs on the development of cotton fibers, through screening cotton fiber EST database and contigging the candidate ESTs, a key gene (GhDWF1) involved in the upstream biosynthetic pathway of BRs was cloned from developing fibers of upland cotton (Gossypium hirsutum L.) cv. Xuzhou 142. The full length of the cloned cDNA is 1 849 bp, including a 37 bp 5'-untranslated region, an ORF of 1692 bp, and a 120 bp 3'-untranslated region.The cDNA encodes a polypeptide of 563 amino acid residues with a predicted molecular mass of 65 kD. The deduced amino acid sequence has high homology with the BR biosynthetic enzyme, DWARF1/DIMINUTO, from rice, maize, pea,tomato, and Arabidopsis. Furthermore, the typical conserved structures, such as the transmembrane domain, the FAD-dependent oxidase domain, and the FAD-binding site, are present in the GhDWF1 protein. The Southern blot indicated that the GhDWF1 gene is a single copy in upland cotton genome. RT-PCR analysis revealed that the highest level of GhDWF1 expression was detected in 0 DPA (day post anthesis) ovule (with fibers) while the lowest level was observed in cotyledon. The GhDWF1 gene presents high expression levels in root, young stem, and fiber, especially, at the fiber developmental stage of secondary cell wall accumulation. Moreover, the expression level was higher in ovules (with fibers) of wildtype (Xuzhou 142) than in ovules of fuzzless-lintless mutant at the same developmental stages (0 and 4 DPA). The results suggest that the GhDWF1 gene plays a crucial role in fiber development.

  20. Changes in the nutritional value of soybeans by application of brassinosteroids during vegetation period

    Czech Academy of Sciences Publication Activity Database

    Havlík, J.; Štranc, P.; Klouček, P.; Erhartová, D.; Kohout, Ladislav

    Košice : University of Veterinary Medicine Košice, 2006, s. 10-13. ISBN 80-8077-035-2. [Výživa zvierat 2006. Medzinárodná konferencia študentov doktorandských študijných programov a mladých vedeckých pracovníkov /10./. Košice (SK), 14.09.2006] Institutional research plan: CEZ:AV0Z40550506 Keywords : brassinosteroids * soybeans * nutritional value * isoflavonoids Subject RIV: CC - Organic Chemistry

  1. Biological activities of new monohydroxylated brassinosteroid analogues with a carboxylic group in the side chain

    Czech Academy of Sciences Publication Activity Database

    Kvasnica, Miroslav; Oklešťková, Jana; Bazgier, Václav; Rárová, Lucie; Berka, K.; Strnad, Miroslav

    2014-01-01

    Roč. 85, JUL 2014 (2014), s. 58-64. ISSN 0039-128X R&D Projects: GA MŠk LK21306; GA MŠk(CZ) LO1204 Grant ostatní: GA MŠk ED2.1.00/03.0058 Institutional support: RVO:61389030 Keywords : Anticancer activity * Brassinosteroids * Organic synthesis Subject RIV: EF - Botanics Impact factor: 2.639, year: 2014 http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=CCC&DestLinkType=FullRecord&UT=000337652700008

  2. Activity of the Brassinosteroid Transcription Factors BRASSINAZOLE RESISTANT1 and BRASSINOSTEROID INSENSITIVE1-ETHYL METHANESULFONATE-SUPPRESSOR1/BRASSINAZOLE RESISTANT2 Blocks Developmental Reprogramming in Response to Low Phosphate Availability

    Czech Academy of Sciences Publication Activity Database

    Singh, A.P.; Fridman, Y.; Friedlander-Shani, L.; Tarkowská, Danuše; Strnad, Miroslav; Savaldi-Goldstein, S.

    2014-01-01

    Roč. 166, č. 2 (2014), s. 678-688. ISSN 0032-0889 Institutional support: RVO:61389030 Keywords : Transcription * Brassinosteroid * Arabidopsis Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 6.841, year: 2014 http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=MEDLINE&DestLinkType=FullRecord&UT=25136063

  3. A stereospecific pathway for the introduction of deuterium or tritium on the brassinosteroid skeleton by reductive dechlorination of chlorocarbonates

    Czech Academy of Sciences Publication Activity Database

    Marek, Aleš; Patil, Mahadeo Rajshekhar; Klepetářová, Blanka; Kohout, Ladislav; Elbert, Tomáš

    Heidelberg : -, 2012. s. 55-55. [International Symposium on the Synthesis and Applications of Isotopes and Isotopically Labelled Compounds /11./. 09.09.2012-13.09.2012, Heidelberg] R&D Projects: GA AV ČR IAA400550801 Institutional research plan: CEZ:AV0Z40550506 Keywords : brassinosteroids * reductive dechlorination * tritium Subject RIV: CC - Organic Chemistry

  4. Quality and selected metals content of spring wheat (Triticum aestivum L.) grain after the treatment with brassinosteroids druing cultivation

    Czech Academy of Sciences Publication Activity Database

    Kroutil, M.; Hradecká, D.; Kohout, Ladislav; Lachman, J.

    2010-01-01

    Roč. 41, č. 2 (2010), s. 65-72. ISSN 1211-3174 Grant ostatní: GA MZe(CZ) QH92111 Institutional research plan: CEZ:AV0Z40550506 Keywords : brassinosteroids * carotenoids * chlorophylls * heterosis Subject RIV: GC - Agronomy

  5. Brassinosteroids Denigrate the Seasonal Stress through Antioxidant Defense System in Seedlings of Brassica juncea L.

    Directory of Open Access Journals (Sweden)

    Sandeep Kumar

    2014-05-01

    Full Text Available The present work has been undertaken to study the effect of exogenously application of 24-epiBL and 28-homoBL on soluble protein, proline contents and antioxidant defense system of Brassica juncea L. RLM 619 under the influence of seasonal stress. It was observed that 24-epiBL and 28-homoBL treatment enhance the soluble protein, dry weight and shoot length of B. juncea seedlings under seasonal stress. If seeds treated with the different concentrations (10-6, 10-8 and 10-10 M of 24-epiBL and 28-homoBL revealed batter growth, protein and proline contents as compare to untreated seedlings. Similarly the activities of antioxidant enzymes SOD, CAT, APOX, DHAR, PPO and Auxinases were enhanced by the application of different concentration of both brassinosteroids, whereas MDA content was decrease with both brassinosteroids treatments. Then we have concluded that both brassinolides have the seasonal stress ameliorative properties in B. juncea seedlings grown under the influence of seasonal stress. This study culminates to the role of brassinolides as an anti-stress property for protection of plant from various types of stresses.

  6. Ligand Perception, Activation, and Early Signaling of Plant Steroid Receptor Brassinosteroid Insensitive 1

    Institute of Scientific and Technical Information of China (English)

    Jianjun Jiang; Chi Zhang; Xuelu Wang

    2013-01-01

    Leucine-rich repeat receptor-like kinases (LRR-RLKs) belong to a large group of cell surface proteins involved in many aspects of plant development and environmental responses in both monocots and dicots. Brassinosteroid insensitive 1 (BRI1), a member of the LRR X subfamily, was first identified through several forward genetic screenings for mutants insensitive to brassinosteroids (BRs), which are a class of plant-specific steroid hormones. Since its identification, BRI1 and its homologs had been proved as receptors perceiving BRs and initiating BR signaling. The co-receptor BRI1-associated kinase 1 and its homologs, and other BRI1 interacting proteins such as its inhibitor BRI1 kinase inhibitor 1 (BKI1) were identified by genetic and biochemical approaches. The detailed mechanisms of BR perception by BRI1 and the activation of BRI1 receptor complex have also been elucidated. Moreover, several mechanisms for termination of the activated BRI1 signaling were also discovered. In this review, we will focus on the recent advances on the mechanism of BRI1 phosphorylation and activation, the regulation of its receptor complex, the structure basis of BRI1 ectodomain and BR recognition, its direct substrates, and the termination of the activated BRI1 receptor complex.

  7. Isolation and Characterization of the Brassinosteroid Receptor Gene (GmBRI1 from Glycine max

    Directory of Open Access Journals (Sweden)

    Miao Wang

    2014-03-01

    Full Text Available Brassinosteroids (BRs constitute a group of steroidal phytohormones that contribute to a wide range of plant growth and development functions. The genetic modulation of BR receptor genes, which play major roles in the BR signaling pathway, can create semi-dwarf plants that have great advantages in crop production. In this study, a brassinosteroid insensitive gene homologous with AtBRI1 and other BRIs was isolated from Glycine max and designated as GmBRI1. A bioinformatic analysis revealed that GmBRI1 shares a conserved kinase domain and 25 tandem leucine-rich repeats (LRRs that are characteristic of a BR receptor for BR reception and reaction and bear a striking similarity in protein tertiary structure to AtBRI1. GmBRI1 transcripts were more abundant in soybean hypocotyls and could be upregulated in response to exogenous BR treatment. The transformation of GmBRI1 into the Arabidopsis dwarf mutant bri1-5 restored the phenotype, especially regarding pod size and plant height. Additionally, this complementation is a consequence of a restored BR signaling pathway demonstrated in the light/dark analysis, root inhibition assay and BR-response gene expression. Therefore, GmBRI1 functions as a BR receptor to alter BR-mediated signaling and is valuable for improving plant architecture and enhancing the yield of soybean.

  8. Interactions between ethylene, gibberellins, and brassinosteroids in the development of rhizobial and mycorrhizal symbioses of pea.

    Science.gov (United States)

    Foo, Eloise; McAdam, Erin L; Weller, James L; Reid, James B

    2016-04-01

    The regulation of arbuscular mycorrhizal development and nodulation involves complex interactions between the plant and its microbial symbionts. In this study, we use the recently identified ethylene-insensitiveein2mutant in pea (Pisum sativumL.) to explore the role of ethylene in the development of these symbioses. We show that ethylene acts as a strong negative regulator of nodulation, confirming reports in other legumes. Minor changes in gibberellin1and indole-3-acetic acid levels inein2roots appear insufficient to explain the differences in nodulation. Double mutants produced by crosses betweenein2and the severely gibberellin-deficientnaand brassinosteroid-deficientlkmutants showed increased nodule numbers and reduced nodule spacing compared with thenaandlksingle mutants, but nodule numbers and spacing were typical ofein2plants, suggesting that the reduced number of nodules innaandlkplants is largely due to the elevated ethylene levels previously reported in these mutants. We show that ethylene can also negatively regulate mycorrhizae development when ethylene levels are elevated above basal levels, consistent with a role for ethylene in reducing symbiotic development under stressful conditions. In contrast to the hormone interactions in nodulation,ein2does not override the effect oflkornaon the development of arbuscular mycorrhizae, suggesting that brassinosteroids and gibberellins influence this process largely independently of ethylene. PMID:26889005

  9. 'Candidatus Liberibacter asiaticus', Causal Agent of Citrus Huanglongbing, Is Reduced by Treatment with Brassinosteroids.

    Science.gov (United States)

    Canales, Eduardo; Coll, Yamilet; Hernández, Ingrid; Portieles, Roxana; Rodríguez García, Mayra; López, Yunior; Aranguren, Miguel; Alonso, Eugenio; Delgado, Roger; Luis, Maritza; Batista, Lochy; Paredes, Camilo; Rodríguez, Meilyn; Pujol, Merardo; Ochagavia, María Elena; Falcón, Viviana; Terauchi, Ryohei; Matsumura, Hideo; Ayra-Pardo, Camilo; Llauger, Raixa; Pérez, María del Carmen; Núñez, Mirian; Borrusch, Melissa S; Walton, Jonathan D; Silva, Yussuan; Pimentel, Eulogio; Borroto, Carlos; Borrás-Hidalgo, Orlando

    2016-01-01

    Huanglongbing (HLB) constitutes the most destructive disease of citrus worldwide, yet no established efficient management measures exist for it. Brassinosteroids, a family of plant steroidal compounds, are essential for plant growth, development and stress tolerance. As a possible control strategy for HLB, epibrassinolide was applied to as a foliar spray to citrus plants infected with the causal agent of HLB, 'Candidatus Liberibacter asiaticus'. The bacterial titers were reduced after treatment with epibrassinolide under both greenhouse and field conditions but were stronger in the greenhouse. Known defense genes were induced in leaves by epibrassinolide. With the SuperSAGE technology combined with next generation sequencing, induction of genes known to be associated with defense response to bacteria and hormone transduction pathways were identified. The results demonstrate that epibrassinolide may provide a useful tool for the management of HLB. PMID:26731660

  10. Phosphatidic Acid Regulates BZR1 Activity andBrassinosteroid Signal of Arabidopsis

    Institute of Scientific and Technical Information of China (English)

    2014-01-01

    Dear Editor, Brassinosteroid (BR) is an important hormone and playscrucial roles in plant growth and development (Kim andWang, 2010). Genetics studies identify many componentsinvolving in BR signaling, including transcript factor BZR1(BRASSINAZOLE RESISTANT 1). BZR1 is dephosphorylated (Heet al., 2005) to regulate expression of target genes. A sin-gle amino acid mutation in BZR1 PEST domain results inenhanced binding and dephosphorylation by PP2A (PROTEINPHOSPHATASE 2A; Tang et al., 2011), leading to constitutivelyactivated BZR1 and enhanced BR signal in gain-of-functionmutant bzr1-1D. Although BR signal is well characterized inArabidopsis, how the components of BR signaling transduc-tion pathway are reclulated needs further illustrations.

  11. Manifestation of structure and intermolecular interactions of biologically active brassinosteroids in infrared spectra

    Science.gov (United States)

    Borisevich, N. A.; Skornyakov, I. V.; Khripach, V. A.; Tolstorozhev, G. B.; Zhabinskii, V. N.

    2007-09-01

    We have analyzed the IR spectra obtained for steroidal phytohormones 24-epibrassinolide, 24-epicastasterone, 28-homobrassinolide, and 28-homocastasterone. The characteristic frequencies of the stretching vibrations of the hydrocarbon groups CH3, CH2, and CH and also the C=O groups in the spectra of brassinolides are higher than in the spectra of castasterones, which makes it possible to identify them from the IR spectra. Study of the spectra of these brassinosteroids in different media (pressed samples in KBr, films, solutions in CHCl3 and CDCl3) allowed us to establish the presence of intermolecular interactions in which C=O and OH groups, OH-OH groups participate, and also the possible formation of intramolecular hydrogen bonds between the OH groups of the molecules.

  12. 'Candidatus Liberibacter asiaticus', Causal Agent of Citrus Huanglongbing, Is Reduced by Treatment with Brassinosteroids.

    Directory of Open Access Journals (Sweden)

    Eduardo Canales

    Full Text Available Huanglongbing (HLB constitutes the most destructive disease of citrus worldwide, yet no established efficient management measures exist for it. Brassinosteroids, a family of plant steroidal compounds, are essential for plant growth, development and stress tolerance. As a possible control strategy for HLB, epibrassinolide was applied to as a foliar spray to citrus plants infected with the causal agent of HLB, 'Candidatus Liberibacter asiaticus'. The bacterial titers were reduced after treatment with epibrassinolide under both greenhouse and field conditions but were stronger in the greenhouse. Known defense genes were induced in leaves by epibrassinolide. With the SuperSAGE technology combined with next generation sequencing, induction of genes known to be associated with defense response to bacteria and hormone transduction pathways were identified. The results demonstrate that epibrassinolide may provide a useful tool for the management of HLB.

  13. Identification of brassinosteroid responsive genes in Arabidopsis by cDNA array

    Institute of Scientific and Technical Information of China (English)

    胡玉欣; 汪政科; 王永红; 包方; 李凝; 彭镇华; 李家洋

    2001-01-01

    We have systematically monitored brassinosteroid (BR) responsive genes in a BR-deficient mutant det2 suspension culture of Arabidopsis by using a cDNA array approach. Among 13000 cDNA clones arrayed on filters, 53 BR responsive clones were identified and designated BRR1-BRR53. Sequence analysis of 43 clones showed that 19 clones are novel genes, 3 clones are genes involved in the control of cell division, 4 clones are genes related to plant stress responses, 4 clones are transcriptional factor or signal transduction component genes, and 3 clones are genes involved in RNA splicing or structure forming. In addition, we also found that BR regulated the transcription of genes related to many physiological processes, such as photoreaction, ion transportation and some metabolic processes. These findings present molecular evidence that BR plays an essential role in plant growth and development.

  14. Microarray and Proteomic Analysis of Brassinosteroid- and Gibberellin-Regulated Gene and Protein Expression in Rice

    Institute of Scientific and Technical Information of China (English)

    Guangxiao Yang; Setsuko Komatsu

    2004-01-01

    Brassinosteroid (BR) and gibberellin (GA) are two groups of plant growth regulators essential for normal plant growth and development. To gain insight into the molecular mechanism by which BR and GA regulate the growth and development of plants, especially the monocot plant rice, it is necessary to identify and analyze more genes and proteins that are regulated by them. With the availability of draft sequences of two major types, japonica and indica rice, it has become possible to analyze expression changes of genes and proteins at genome scale. In this review, we summarize rice functional genomic research by using microarray and proteomic approaches and our recent research results focusing on the comparison of cDNA microarray and proteomic analyses of BR- and GA-regulated gene and protein expression in rice. We believe our findings have important implications for understanding the mechanism by which BR and GA regulate the growth and development of rice.

  15. ‘Candidatus Liberibacter asiaticus’, Causal Agent of Citrus Huanglongbing, Is Reduced by Treatment with Brassinosteroids

    Science.gov (United States)

    Hernández, Ingrid; Portieles, Roxana; Rodríguez García, Mayra; López, Yunior; Aranguren, Miguel; Alonso, Eugenio; Delgado, Roger; Luis, Maritza; Batista, Lochy; Paredes, Camilo; Rodríguez, Meilyn; Pujol, Merardo; Ochagavia, María Elena; Falcón, Viviana; Terauchi, Ryohei; Matsumura, Hideo; Ayra-Pardo, Camilo; Llauger, Raixa; Pérez, María del Carmen; Núñez, Mirian; Borrusch, Melissa S.; Walton, Jonathan D.; Silva, Yussuan; Pimentel, Eulogio; Borroto, Carlos; Borrás-Hidalgo, Orlando

    2016-01-01

    Huanglongbing (HLB) constitutes the most destructive disease of citrus worldwide, yet no established efficient management measures exist for it. Brassinosteroids, a family of plant steroidal compounds, are essential for plant growth, development and stress tolerance. As a possible control strategy for HLB, epibrassinolide was applied to as a foliar spray to citrus plants infected with the causal agent of HLB, ‘Candidatus Liberibacter asiaticus’. The bacterial titers were reduced after treatment with epibrassinolide under both greenhouse and field conditions but were stronger in the greenhouse. Known defense genes were induced in leaves by epibrassinolide. With the SuperSAGE technology combined with next generation sequencing, induction of genes known to be associated with defense response to bacteria and hormone transduction pathways were identified. The results demonstrate that epibrassinolide may provide a useful tool for the management of HLB. PMID:26731660

  16. Influence of brassinosteroids on plant cell alternative respiration pathway and antioxidant systems activity under abiotic stress conditions

    Directory of Open Access Journals (Sweden)

    Derevyanchuk M. V.

    2014-11-01

    Full Text Available Aim. To investigate the brassinosteroids (BRs influence on the plant alternative respiration pathway and antioxidant systems to regulate the ROS (reactive oxygen species production under optimal and abiotic stress conditions. Methods. Respiration measurement experiments were done with the polarographic technique. Original methods were used to evaluate the antioxidant systems activity. Results. Treatment with BRs increased the inten- sity of plant alternative respiration pathway under control and stress conditions. BRs had no effect on alternative respiration of the BR-insensitive bri1–6 plants. Brassinosteroids also increased the activity of a range of antioxidant systems under osmotic stress. Conclusions. BRs are involved in the regulation of alternative respiration pathway and antioxidant systems activity in plant cells under optimal and abiotic stress conditions.

  17. Role of brassinosteroids in alleviation of phenanthrene–cadmium co-contamination-induced photosynthetic inhibition and oxidative stress in tomato

    OpenAIRE

    Ahammed, Golam Jalal; Choudhary, Sikander Pal; Chen, Shuangchen; Xia, Xiaojian; Shi, Kai; Zhou, Yanhong; Yu, Jingquan

    2012-01-01

    Heavy metal pollution often occurs together with organic contaminants. Brassinosteroids (BRs) induce plant tolerance to several abiotic stresses, including phenanthrene (PHE) and cadmium (Cd) stress. However, the role of BRs in PHE+Cd co-contamination-induced stress amelioration is unknown. Here, the interactive effects of PHE, Cd, and 24-epibrassinolide (EBR; a biologically active BR) were investigated in tomato plants. The application of Cd (100 µM) alone was more phytotoxic than PHE applie...

  18. Brassinosteroids alleviate high-temperature injury in Ficus concinna seedlings via maintaining higher antioxidant defence and glyoxalase systems

    OpenAIRE

    Jin, Song Heng; Li, Xue Qin; Wang, G. Geoff; Zhu, Xiang Tao

    2015-01-01

    Although brassinosteroids (BRs) play crucial roles in plant development and stress tolerance, the mechanisms by which they have these effects are poorly understood. Here, we investigated the possible mechanism of exogenously applied BRs on reactive oxygen species (ROS), antioxidant defence and methylglyoxal (MG) detoxification systems in Ficus concinna seedlings grown under high-temperature (HT) stress for 48 h. Our results showed that the activities of ascorbate peroxidase (APX), superoxide ...

  19. Genetic Variation in Plant CYP51s Confers Resistance against Voriconazole, a Novel Inhibitor of Brassinosteroid-Dependent Sterol Biosynthesis

    OpenAIRE

    Rozhon, Wilfried; Husar, Sigrid; Kalaivanan, Florian; Khan, Mamoona; Idlhammer, Markus; Shumilina, Daria; Lange, Theo; Hoffmann, Thomas; Schwab, Wilfried; Fujioka, Shozo; Poppenberger, Brigitte

    2013-01-01

    Brassinosteroids (BRs) are plant steroid hormones with structural similarity to mammalian sex steroids and ecdysteroids from insects. The BRs are synthesized from sterols and are essential regulators of cell division, cell elongation and cell differentiation. In this work we show that voriconazole, an antifungal therapeutic drug used in human and veterinary medicine, severely impairs plant growth by inhibiting sterol-14α-demethylation and thereby interfering with BR production. The plant grow...

  20. The synthesis of androstane brassinosteroid analogues with alpha-azido acid ester groups in position 17beta

    Czech Academy of Sciences Publication Activity Database

    Hniličková, Jaroslava; Kohout, Ladislav; Capdevila, E.; Esteve, A.; Vilaplana, M.; Molist, M.; Brosa, C.; Swaczynová, Jana; Slavíková, Barbora

    2010-01-01

    Roč. 75, č. 12 (2010), s. 1005-1010. ISSN 0039-128X R&D Projects: GA AV ČR 1QS510680561; GA MŠk 1M06030 Institutional research plan: CEZ:AV0Z40550506; CEZ:AV0Z50380511 Keywords : brassinosteroids * androstane analogues * plant growth regulators Subject RIV: CC - Organic Chemistry Impact factor: 3.106, year: 2010

  1. Structure-Activity Studies of Brassinosteroids and the Search for Novel Analogues and Mimetics with Improved Bioactivity.

    Science.gov (United States)

    Back, Thomas G.; Pharis, Richard P.

    2003-12-01

    A number of novel brassinosteroid analogues were synthesized and subjected to the rice leaf lamina inclination bioassay. Modified B-ring analogues included lactam, thiolactone, cyclic ether, ketone, hydroxyl, and exocyclic methylene derivatives of brassinolide. Those derivatives containing polar functional groups retained considerable bioactivity, whereas the exocyclic methylene compounds were devoid of activity. Analogues containing normal alkyl and cycloalkyl substituents at C-24 (in place of the isopropyl group of brassinolide) showed an inverse relationship between activity and chain length or ring size, respectively. The corresponding cyclopropyl and cyclobutyl derivatives were significantly more active than brassinolide and appear to be the most potent brassinosteroids reported to date. When synergized with the auxin indole-3-acetic acid (IAA), their bioactivity can be further enhanced by 1-2 orders of magnitude. The cyclopropyl derivative, when coapplied with the auxin naphthaleneacetic acid, gave a significant increase in yield of wheat in a field trial. Certain 25- and 26-hydroxy derivatives are known metabolites of brassinosteroids. All of the C-25 stereoisomers of 25-hydroxy, 26-hydroxy, and 25,26-dihydroxy derivatives of brassinolide were prepared and shown to be much less active than brassinolide. This indicates that they are likely metabolic deactivation products of the parent phytohormone. A series of methyl ethers of brassinolide was synthesized to block deactivation by glucosylation of the free hydroxyl groups. The most significant finding was that the compound where three of the four hydroxyl groups (at C-3, C-22, and C-23) had been converted to methyl ethers retained substantial bioactivity. This type of modification could, in theory, allow brassinolide or 24-epibrassinolide to resist deactivation and thus offer greater persistence in field applications. A series of nonsteroidal mimetics of brassinolide was designed and synthesized. Two of the

  2. Transcription of DWARF4 plays a crucial role in auxin-regulated root elongation in addition to brassinosteroid homeostasis in Arabidopsis thaliana.

    Directory of Open Access Journals (Sweden)

    Yuya Yoshimitsu

    Full Text Available The expression of DWARF4 (DWF4, which encodes a C-22 hydroxylase, is crucial for brassinosteroid (BR biosynthesis and for the feedback control of endogenous BR levels. To advance our knowledge of BRs, we examined the effects of different plant hormones on DWF4 transcription in Arabidopsis thaliana. Semi-quantitative reverse-transcriptase PCR showed that the amount of the DWF4 mRNA precursor either decreased or increased, similarly with its mature form, in response to an exogenously applied bioactive BR, brassinolide (BL, and a BR biosynthesis inhibitor, brassinazole (Brz, respectively. The response to these chemicals in the levels of β-glucuronidase (GUS mRNA and its enzymatic activity is similar to the response of native DWF4 mRNA in DWF4::GUS plants. Contrary to the effects of BL, exogenous auxin induced GUS activity, but this enhancement was suppressed by anti-auxins, such as α-(phenylethyl-2-one-IAA and α-tert-butoxycarbonylaminohexyl-IAA, suggesting the involvement of SCF(TIR1-mediated auxin signaling in auxin-induced DWF4 transcription. Auxin-enhanced GUS activity was observed exclusively in roots; it was the most prominent in the elongation zones of both primary and lateral roots. Furthermore, auxin-induced lateral root elongation was suppressed by both Brz application and the dwf4 mutation, and this suppression was rescued by BL, suggesting that BRs act positively on root elongation under the control of auxin. Altogether, our results indicate that DWF4 transcription plays a novel role in the BR-auxin crosstalk associated with root elongation, in addition to its role in BR homeostasis.

  3. Brassinosteroids-Induced Systemic Stress Tolerance was Associated with Increased Transcripts of Several Defence-Related Genes in the Phloem in Cucumis sativus.

    Directory of Open Access Journals (Sweden)

    Pingfang Li

    Full Text Available Brassinosteroids (BRs, a group of naturally occurring plant steroidal compounds, are essential for plant growth, development and stress tolerance. Recent studies showed that BRs could induce systemic tolerance to biotic and abiotic stresses; however, the molecular mechanisms by which BRs signals lead to responses in the whole plant are largely unknown. In this study, 24-epibrassinosteroid (EBR-induced systemic tolerance in Cucumis sativus L. cv. Jinyan No. 4 was analyzed through the assessment of symptoms of photooxidative stress by chlorophyll fluorescence imaging pulse amplitude modulation. Expression of defense/stress related genes were induced in both treated local leaves and untreated systemic leaves by local EBR application. With the suppressive subtractive hybridization (SSH library using cDNA from the phloem sap of EBR-treated plants as the tester and distilled water (DW-treated plants as the driver, 14 transcripts out of 260 clones were identified. Quantitative Real Time-Polymerase Chain Reaction (RT-qPCR validated the specific up-regulation of these transcripts. Of the differentially expressed transcripts with known functions, transcripts for the selected four cDNAs, which encode an auxin-responsive protein (IAA14, a putative ankyrin-repeat protein, an F-box protein (PP2, and a major latex, pathogenesis-related (MLP-like protein, were induced in local leaves, systemic leaves and roots after foliar application of EBR onto mature leaves. Our results demonstrated that EBR-induced systemic tolerance is accompanied with increased transcript of genes in the defense response in other organs. The potential role of phloem mRNAs as signaling components in mediating BR-regulated systemic resistance is discussed.

  4. Brassinosteroids interact negatively with jasmonates in the formation of anti-herbivory traits in tomato.

    Science.gov (United States)

    Campos, Marcelo Lattarulo; de Almeida, Marcílio; Rossi, Mônica Lanzoni; Martinelli, Adriana Pinheiro; Litholdo Junior, Celso Gaspar; Figueira, Antonio; Rampelotti-Ferreira, Fátima Teresinha; Vendramim, José Djair; Benedito, Vagner Augusto; Peres, Lázaro Eustáquio Pereira

    2009-01-01

    Given the susceptibility of tomato plants to pests, the aim of the present study was to understand how hormones are involved in the formation of tomato natural defences against insect herbivory. Tomato hormone mutants, previously introgressed into the same genetic background of reference, were screened for alterations in trichome densities and allelochemical content. Ethylene, gibberellin, and auxin mutants indirectly showed alteration in trichome density, through effects on epidermal cell area. However, brassinosteroids (BRs) and jasmonates (JAs) directly affected trichome density and allelochemical content, and in an opposite fashion. The BR-deficient mutant dpy showed enhanced pubescence, zingiberene biosynthesis, and proteinase inhibitor expression; the opposite was observed for the JA-insensitive jai1-1 mutant. The dpy x jai1-1 double mutant showed that jai1-1 is epistatic to dpy, indicating that BR acts upstream of the JA signalling pathway. Herbivory tests with the poliphagous insect Spodoptera frugiperda and the tomato pest Tuta absoluta clearly confirmed the importance of the JA-BR interaction in defence against herbivory. The study underscores the importance of hormonal interactions on relevant agricultural traits and raises a novel biological mechanism in tomato that may differ from the BR and JA interaction already suggested for Arabidopsis. PMID:19734261

  5. Genome-Wide Analysis Revealed the Complex Regulatory Network of Brassinosteroid Effects in Photomorphogenesis

    Institute of Scientific and Technical Information of China (English)

    Li Song; Xiao-Yi Zhou; Li Li; Liang-Jiao Xue; Xi Yang; Hong-Wei Xue

    2009-01-01

    Light and brassinosteroids (BRs) have been proved to be crucial in regulating plant growth and development;however,the mechanism of how they synergistically function is still largely unknown.To explore the underlying mechanisms in photomorphogenesis,genome-wide analyses were carried out through examining the gene expressions of the dark-grown WT or BR biosynthesis-defective mutant det2 seedlings in the presence of light stimuli or exogenous Brassinolide (BL).Results showed that BR deficiency stimulates,while BL treatment suppresses,the expressions of lightresponsive genes and photomorphogenesis,confirming the negative effects of BR in photomorphogenesis.This is consistent with the specific effects of BR on the expression of genes involved in cell wall modification,cellular metabolism and energy utilization during dark-light transition.Further analysis revealed that hormone biosynthesis and signaling-related genes,especially those of auxin,were altered under BL treatment or light stimuli,indicating that BR may modulate photomorphogenesis through synergetic regulation with other hormones.Additionally,suppressed ubiquitin-cycle pathway during light-dark transition hinted the presence of a complicated network among light,hormone,and protein degradation.The study provides the direct evidence of BR effects in photomorphogenesis and identified the genes involved in BR and light signaling pathway,which will help to elucidate the molecular mechanism of plant photomorphogenesis.

  6. Involvement of Auxin and Brassinosteroid in Dwarfism of Autotetraploid Apple (Malus × domestica).

    Science.gov (United States)

    Ma, Yue; Xue, Hao; Zhang, Lei; Zhang, Feng; Ou, Chunqing; Wang, Feng; Zhang, Zhihong

    2016-01-01

    The plant height is an important trait in fruit tree. However, the molecular mechanism on dwarfism is still poorly understood. We found that colchicine-induced autotetraploid apple plants (Malus × domestica) exhibited a dwarf phenotype. The vertical length of cortical parenchyma cells was shorter in autotetraploids than in diploids, by observing paraffin sections. Hormone levels of indoleacetic acid (IAA) and brassinosteroid (BR) were significantly decreased in 3- and 5-year-old autotetraploid plants. Digital gene expression (DGE) analysis showed that the differentially expressed genes were mainly involved in IAA and BR pathways. microRNA390 was significantly upregulated according to microarray analysis. Exogenous application of IAA and BR promoted stem elongation of both apple plants grown in medium. The results show that dwarfing in autotetraploid apple plants is most likely regulated by IAA and BR. The dwarf phenotype of autotetraploid apple plants could be due to accumulation of miR390 after genome doubling, leading to upregulation of apple trans-acting short-interfering RNA 3 (MdTAS3) expression, which in turn downregulates the expression of MdARF3. Overall, this leads to partial interruption of the IAA and BR signal transduction pathway. Our study provides important insights into the molecular mechanisms underlying dwarfism in autopolyploid apple plants. PMID:27216878

  7. The determination of 22 natural brassinosteroids in a minute sample of plant tissue by UHPLC-ESI-MS/MS.

    Science.gov (United States)

    Tarkowská, Danuše; Novák, Ondřej; Oklestkova, Jana; Strnad, Miroslav

    2016-09-01

    The triterpenoid plant hormones brassinosteroids (BRs) are believed to influence almost every aspect of plant growth and development. We have developed a sensitive mass spectrometry-based method for the simultaneous profiling of twenty-two naturally occurring brassinosteroids including biosynthetic precursors and the majority of biologically active metabolites. Using ultra-high performance liquid chromatographic (UHPLC) analysis, the run time was reduced up to three times (to 9 min) in comparison to standard HPLC BRs analyses, the retention time stability was improved to 0.1-0.2 % RSD and the injection accuracy was increased to 1.1-4.9 % RSD. The procedures for extraction and for two-step purification based on solid-phase extraction (SPE) were optimised in combination with subsequent UHPLC analysis coupled to electrospray ionisation tandem mass spectrometry (ESI-MS/MS) using Brassica flowers and Arabidopsis plant tissue extracts. In multiple reaction monitoring (MRM) mode, the average detection limit for BRs analysed was close to 7 pg, and the linear range covered up to 3 orders of magnitude. The low detection limits for this broad range of BR metabolites enabled as little as 50 mg of plant tissue to be used for quantitative analyses. The results of determinations exploiting internal standards showed that this approach provides a high level of practicality, reproducibility and recovery. The method we have established will enable researchers to gain a better understanding of the dynamics of the biosynthesis and metabolism of brassinosteroids and their modes of action in plant growth and development. PMID:27531032

  8. Chromium Stress Mitigation by Polyamine-Brassinosteroid Application Involves Phytohormonal and Physiological Strategies in Raphanus sativus L.

    OpenAIRE

    Choudhary, Sikander Pal; Kanwar, Mukesh; Bhardwaj, Renu; Yu, Jing-Quan; Tran, Lam-Son Phan

    2012-01-01

    Brassinosteroids (BRs) and polyamines (PAs) are well-established growth regulators playing key roles in stress management among plants. In the present study, we evaluated the effects of epibrassinolide (EBL, an active BR) and spermidine (Spd, an active PA) on the tolerance of radish to oxidative stress induced by Cr (VI) metal. Our investigation aimed to study the impacts of EBL (10−9 M) and/or Spd (1 mM) on the biochemical and physiological responses of radish (Raphanus sativus L.) under Cr-...

  9. H2O2 mediates the crosstalk of brassinosteroid and abscisic acid in tomato responses to heat and oxidative stresses

    OpenAIRE

    Zhou, Jie; Wang, Jian; Li, Xin; Xia, Xiao-Jian; Zhou, Yan-Hong; Shi, Kai; Chen, Zhixiang; Yu, Jing-Quan

    2014-01-01

    The production of H2O2 is critical for brassinosteroid (BR)- and abscisic acid (ABA)-induced stress tolerance in plants. In this study, the relationship between BR and ABA in the induction of H2O2 production and their roles in response to heat and paraquat (PQ) oxidative stresses were studied in tomato. Both BR and ABA induced increases in RBOH1 gene expression, NADPH oxidase activity, apoplastic H2O2 accumulation, and heat and PQ stress tolerance in wild-type plants. BR could only induced tr...

  10. Brassinosteroid Enhances Cold Stress Tolerance of Washington Navel Orange (Citrus sinensis L.) Fruit by Regulating Antioxidant Enzymes During Storage

    OpenAIRE

    Bahareh Ghorbani; Zahra Pakkish

    2014-01-01

    The effect of brassinosteroid (BR) on chilling injury of Washington Navel orange (Citrus sinensis L.) fruit was investigated. BR at the concentrations of 0.75 and 1.5 ppm effectively reduced chilling injury of Washington Navel orange fruit during five months storage at 3°C, and BR at 1.5 ppm showed the best effect. BR treatment also reduced the lipid peroxidaion and peroxide hydrogen content of peel and pulp during storage. Results of physiological response in orange fruit showed that...

  11. Vliv aplikace brassinosteroidů na výnos a kvalitu chmelových hlávek

    Czech Academy of Sciences Publication Activity Database

    Štranc, P.; Štranc, J.; Štranc, D.; Hradecká, D.; Kohout, Ladislav

    České Budějovice : Jihočeská univerzita v Českých Budějovicích, 2006, s. 97-100. ISBN 80-7040-874-X. [Současné představy a požadavky na kvalitu rostlinných produktů. České Budějovice (CZ), 29.08.2006] R&D Projects: GA AV ČR 1QS510680561 Institutional research plan: CEZ:AV0Z40550506 Keywords : brassinosteroids * hop * quality Subject RIV: CC - Organic Chemistry

  12. Genetic evidence for an indispensable role of somatic embryogenesis receptor kinases in brassinosteroid signaling.

    Directory of Open Access Journals (Sweden)

    Xiaoping Gou

    2012-01-01

    Full Text Available The Arabidopsis thaliana somatic embryogenesis receptor kinases (SERKs consist of five members, SERK1 to SERK5, of the leucine-rich repeat receptor-like kinase subfamily II (LRR-RLK II. SERK3 was named BRI1-Associated Receptor Kinase 1 (BAK1 due to its direct interaction with the brassinosteroid (BR receptor BRI1 in vivo, while SERK4 has also been designated as BAK1-Like 1 (BKK1 for its functionally redundant role with BAK1. Here we provide genetic and biochemical evidence to demonstrate that SERKs are absolutely required for early steps in BR signaling. Overexpression of four of the five SERKs-SERK1, SERK2, SERK3/BAK1, and SERK4/BKK1-suppressed the phenotypes of an intermediate BRI1 mutant, bri1-5. Overexpression of the kinase-dead versions of these four genes in the bri1-5 background, on the other hand, resulted in typical dominant negative phenotypes, resembling those of null BRI1 mutants. We isolated and generated single, double, triple, and quadruple mutants and analyzed their phenotypes in detail. While the quadruple mutant is embryo-lethal, the serk1 bak1 bkk1 triple null mutant exhibits an extreme de-etiolated phenotype similar to a null bri1 mutant. While overexpression of BRI1 can drastically increase hypocotyl growth of wild-type plants, overexpression of BRI1 does not alter hypocotyl growth of the serk1 bak1 bkk1 triple mutant. Biochemical analysis indicated that the phosphorylation level of BRI1 in serk1 bak1 bkk1 is incapable of sensing exogenously applied BR. As a result, the unphosphorylated level of BES1 has lost its sensitivity to the BR treatment in the triple mutant, indicating that the BR signaling pathway has been completely abolished in the triple mutant. These data clearly demonstrate that SERKs are essential to the early events of BR signaling.

  13. Foliar application of brassinosteroids alleviates adverse effects of zinc toxicity in radish (Raphanus sativus L.) plants.

    Science.gov (United States)

    Ramakrishna, Bellamkonda; Rao, S Seeta Ram

    2015-03-01

    Growth chamber experiments were conducted to investigate the comparative effect of 24-epibrassinolide (EBL) and 28-homobrassinolide (HBL) at 0.5, 1.0, or 2.0 μM concentrations by foliar application on radish plants growing under Zn(2+) stress. In radish plants exposed to excess Zn(2+), growth was substantially reduced in terms of shoot and root length, fresh and dry weight. However, foliar application of brassinosteroids (BRs) was able to alleviate Zn(2+)-induced stress and significantly improve the above growth traits. Zinc stress decreased chlorophyll a, b, and carotenoids levels in radish plants. However, follow-up treatment with BRs increased the photosynthetic pigments in stressed and stress-free plants. The treatment of BRs led to reduced levels of H2O2, lipid peroxidation and, electrolyte leakage (ELP) and improved the leaf relative water content (RWC) in stressed plants. Increased levels of carbonyls indicating enhanced protein oxidation under Zn(2+) stress was effectively countered by supplementation of BRs. Under Zn(2+) stress, the activities of catalase (CAT), ascorbate peroxidase (APX), and superoxidase dismutase (SOD) were increased but peroxidase (POD) and glutathione reductase (GR) decreased. Foliar spraying of BRs enhanced all these enzymatic activities in radish plants under Zn(2+) stress. The BRs application greatly enhanced contents of ascorbate (ASA), glutathione (GSH), and proline under Zn(2+) stress. The decrease in the activity of nitrate reductase (NR) caused by Zn(2+) stress was restored to the level of control by application of BRs. These results point out that BRs application elevated levels of antioxidative enzymes as well as antioxidants could have conferred resistance to radish plants against Zn(2+) stress resulting in improved plant growth, relative water content and photosynthetic attributes. Of the two BRs, EBL was most effective in amelioration of Zn(2+) stress. PMID:25308099

  14. Brassinosteroid functions in a broad range of disease resistance in tobacco and rice.

    Science.gov (United States)

    Nakashita, Hideo; Yasuda, Michiko; Nitta, Takako; Asami, Tadao; Fujioka, Shozo; Arai, Yuko; Sekimata, Katsuhiko; Takatsuto, Suguru; Yamaguchi, Isamu; Yoshida, Shigeo

    2003-03-01

    Brassinolide (BL), considered to be the most important brassinosteroid (BR) and playing pivotal roles in the hormonal regulation of plant growth and development, was found to induce disease resistance in plants. To study the potentialities of BL activity on stress responding systems, we analyzed its ability to induce disease resistance in tobacco and rice plants. Wild-type tobacco treated with BL exhibited enhanced resistance to the viral pathogen tobacco mosaic virus (TMV), the bacterial pathogen Pseudomonas syringae pv. tabaci (Pst), and the fungal pathogen Oidium sp. The measurement of salicylic acid (SA) in wild-type plants treated with BL and the pathogen infection assays using NahG transgenic plants indicate that BL-induced resistance does not require SA biosynthesis. BL treatment did not induce either acidic or basic pathogenesis-related (PR) gene expression, suggesting that BL-induced resistance is distinct from systemic acquired resistance (SAR) and wound-inducible disease resistance. Analysis using brassinazole 2001, a specific inhibitor for BR biosynthesis, and the measurement of BRs in TMV-infected tobacco leaves indicate that steroid hormone-mediated disease resistance (BDR) plays part in defense response in tobacco. Simultaneous activation of SAR and BDR by SAR inducers and BL, respectively, exhibited additive protective effects against TMV and Pst, indicating that there is no cross-talk between SAR- and BDR-signaling pathway downstream of BL. In addition to the enhanced resistance to a broad range of diseases in tobacco, BL induced resistance in rice to rice blast and bacterial blight diseases caused by Magnaporthe grisea and Xanthomonas oryzae pv. oryzae, respectively. Our data suggest that BDR functions in the innate immunity system of higher plants including dicotyledonous and monocotyledonous species. PMID:12609030

  15. Growth-limiting proteins in maize coleoptiles and the auxin-brassinosteroid hypothesis of mesocotyl elongation.

    Science.gov (United States)

    Kutschera, Ulrich; Wang, Zhi-Yong

    2016-01-01

    The shoot of grass coleoptiles consists of the mesocotyl, the node, and the coleoptile (with enclosed primary leaf). Since the 1930s, it is known that auxin (indole-3-acetic acid, IAA), produced in the tip of the coleoptile, is the central regulator of turgor-driven organ growth. Fifty years ago, it was discovered that antibiotics that suppress protein biosynthesis, such as cycloheximide, inhibit auxin (IAA)-induced cell elongation in excised sections of coleoptiles and stems. Based on such inhibitor studies, the concept of "growth-limiting proteins (GLPs)" emerged that was subsequently elaborated and modified. Here, we summarize the history of this idea with reference to IAA-mediated shoot elongation in maize (Zea mays) seedlings and recent studies on the molecular mechanism underlying auxin action in Arabidopsis thaliana. In addition, the analysis of light-induced inhibition of shoot elongation in intact corn seedlings is discussed. We propose a concept to account for the GLP-mediated epidermal wall-loosening process in coleoptile segments and present a more general model of growth regulation in intact maize seedlings. Quantitative proteomic and genomic studies led to a refinement of the classic "GLP concept" to explain phytohormone-mediated cell elongation at the molecular level (i.e., the recently proposed theory of a "central growth regulation network," CGRN). Novel data show that mesocotyl elongation not only depends on auxin but also on brassinosteroids (BRs). However, the biochemical key processes that regulate the IAA/BR-mediated loosening of the expansion-limiting epidermal wall(s) have not yet been elucidated. PMID:25772679

  16. The effects of brassinosteroids on photosynthetic parameter in leaves of two field-grown maize inbred lines and their F1 hybrid

    Czech Academy of Sciences Publication Activity Database

    Kočová, M.; Rothová, O.; Holá, D.; Kvasnica, Miroslav; Kohout, Ladislav

    2010-01-01

    Roč. 54, č. 4 (2010), s. 785-788. ISSN 0006-3134 R&D Projects: GA AV ČR KJB601110611 Institutional research plan: CEZ:AV0Z40550506 Keywords : brassinosteroids * carotenoids * chlorophylls * heterosis Subject RIV: CC - Organic Chemistry Impact factor: 1.582, year: 2010

  17. Vliv brassinosteroidů na změny hladin ethylenu, kyseliny abscisové a kyseliny indolyl-3-octové

    Czech Academy of Sciences Publication Activity Database

    Vlašánková, E.; Kohout, Ladislav; Klemeš, M.; Eder, Josef; Hradilík, J.

    Praha: ÚOCHB AV ČR, 2004 - (Kohout, L.), s. 11-14 ISBN 80-86241-23-8 R&D Projects: GA AV ČR IBS4055304 Institutional research plan: CEZ:AV0Z4055905 Keywords : brassinosteroids * ethylene * indolyl-3-acetic acid levels Subject RIV: CC - Organic Chemistry

  18. The exogenous application of brassinosteroids to Zea Mays (L.) stressed by long-term chilling does not affect the activities of photosystem 1 or 2

    Czech Academy of Sciences Publication Activity Database

    Honnerová, J.; Rothová, O.; Holá, D.; Kohout, Ladislav; Kvasnica, Miroslav

    2010-01-01

    Roč. 29, č. 4 (2010), s. 500-505. ISSN 0721-7595 R&D Projects: GA AV ČR KJB601110611 Institutional research plan: CEZ:AV0Z40550506 Keywords : chilling stress * brassinosteroids * photosystem 1 * Hill reaction Subject RIV: CC - Organic Chemistry Impact factor: 2.066, year: 2010

  19. Overexpression of the UGT73C6 alters brassinosteroid glucoside formation in Arabidopsis thaliana

    Directory of Open Access Journals (Sweden)

    Krska Rudolf

    2011-03-01

    Full Text Available Abstract Background Brassinosteroids (BRs are signaling molecules that play essential roles in the spatial regulation of plant growth and development. In contrast to other plant hormones BRs act locally, close to the sites of their synthesis, and thus homeostatic mechanisms must operate at the cellular level to equilibrate BR concentrations. Whilst it is recognized that levels of bioactive BRs are likely adjusted by controlling the relative rates of biosynthesis and by catabolism, few factors, which participate in these regulatory events, have as yet been identified. Previously we have shown that the UDP-glycosyltransferase UGT73C5 of Arabidopsis thaliana catalyzes 23-O-glucosylation of BRs and that glucosylation renders BRs inactive. This study identifies the closest homologue of UGT73C5, UGT73C6, as an enzyme that is also able to glucosylate BRs in planta. Results In a candidate gene approach, in which homologues of UGT73C5 were screened for their potential to induce BR deficiency when over-expressed in plants, UGT73C6 was identified as an enzyme that can glucosylate the BRs CS and BL at their 23-O-positions in planta. GUS reporter analysis indicates that UGT73C6 shows over-lapping, but also distinct expression patterns with UGT73C5 and YFP reporter data suggests that at the cellular level, both UGTs localize to the cytoplasm and to the nucleus. A liquid chromatography high-resolution mass spectrometry method for BR metabolite analysis was developed and applied to determine the kinetics of formation and the catabolic fate of BR-23-O-glucosides in wild type and UGT73C5 and UGT73C6 over-expression lines. This approach identified novel BR catabolites, which are considered to be BR-malonylglucosides, and provided first evidence indicating that glucosylation protects BRs from cellular removal. The physiological significance of BR glucosylation, and the possible role of UGT73C6 as a regulatory factor in this process are discussed in light of the

  20. Brassinosteroid Enhances Cold Stress Tolerance of Washington Navel Orange (Citrus sinensis L. Fruit by Regulating Antioxidant Enzymes During Storage

    Directory of Open Access Journals (Sweden)

    Bahareh Ghorbani

    2014-09-01

    Full Text Available The effect of brassinosteroid (BR on chilling injury of Washington Navel orange (Citrus sinensis L. fruit was investigated. BR at the concentrations of 0.75 and 1.5 ppm effectively reduced chilling injury of Washington Navel orange fruit during five months storage at 3°C, and BR at 1.5 ppm showed the best effect. BR treatment also reduced the lipid peroxidaion and peroxide hydrogen content of peel and pulp during storage. Results of physiological response in orange fruit showed that BR induced the activity of antioxidant enzymes including catalase and peroxidase. These results indicate that the elicitation of an antioxidant response in orange fruit by BR may be associated with chilling injury alleviation. Moreover, BR maintained the orange quality by decrease of lipid peroxidation and peroxide hydrogen content. The present study is the first evidence that BR enhances orange fruit tolerance to cold stress and therefore fruit quality.

  1. ENCODE data at the ENCODE portal.

    Science.gov (United States)

    Sloan, Cricket A; Chan, Esther T; Davidson, Jean M; Malladi, Venkat S; Strattan, J Seth; Hitz, Benjamin C; Gabdank, Idan; Narayanan, Aditi K; Ho, Marcus; Lee, Brian T; Rowe, Laurence D; Dreszer, Timothy R; Roe, Greg; Podduturi, Nikhil R; Tanaka, Forrest; Hong, Eurie L; Cherry, J Michael

    2016-01-01

    The Encyclopedia of DNA Elements (ENCODE) Project is in its third phase of creating a comprehensive catalog of functional elements in the human genome. This phase of the project includes an expansion of assays that measure diverse RNA populations, identify proteins that interact with RNA and DNA, probe regions of DNA hypersensitivity, and measure levels of DNA methylation in a wide range of cell and tissue types to identify putative regulatory elements. To date, results for almost 5000 experiments have been released for use by the scientific community. These data are available for searching, visualization and download at the new ENCODE Portal (www.encodeproject.org). The revamped ENCODE Portal provides new ways to browse and search the ENCODE data based on the metadata that describe the assays as well as summaries of the assays that focus on data provenance. In addition, it is a flexible platform that allows integration of genomic data from multiple projects. The portal experience was designed to improve access to ENCODE data by relying on metadata that allow reusability and reproducibility of the experiments. PMID:26527727

  2. Kvalita a minerální složení zrna potravinářské pšenice po aplikaci brassinosteroidů

    Czech Academy of Sciences Publication Activity Database

    Kroutil, M.; Hradecká, D.; Kohout, Ladislav

    Praha: VÚPP Praha, 2006, s. 406-440. [Symposium o nových směrech výroby a hodnocení potravin /37./. Skalský Dvůr (CZ), 29.05.2006-31.05.2006] R&D Projects: GA AV ČR 1QS510680561 Institutional research plan: CEZ:AV0Z40550506 Keywords : brassinosteroids * wheat quality * photosynthesis Subject RIV: CC - Organic Chemistry

  3. Blind encoding into qudits

    International Nuclear Information System (INIS)

    We consider the problem of encoding classical information into unknown qudit states belonging to any basis, of a maximal set of mutually unbiased bases, by one party and then decoding by another party who has perfect knowledge of the basis. Working with qudits of prime dimensions, we point out a no-go theorem that forbids 'shift' operations on arbitrary unknown states. We then provide the necessary conditions for reliable encoding/decoding

  4. Overexpression of the brassinosteroid biosynthetic gene DWF4 in Brassica napus simultaneously increases seed yield and stress tolerance.

    Science.gov (United States)

    Sahni, Sangita; Prasad, Bishun D; Liu, Qing; Grbic, Vojislava; Sharpe, Andrew; Singh, Surinder P; Krishna, Priti

    2016-01-01

    As a resource allocation strategy, plant growth and defense responses are generally mutually antagonistic. Brassinosteroid (BR) regulates many aspects of plant development and stress responses, however, genetic evidence of its integrated effects on plant growth and stress tolerance is lacking. We overexpressed the Arabidopsis BR biosynthetic gene AtDWF4 in the oilseed plant Brassica napus and scored growth and stress response phenotypes. The transgenic B. napus plants, in comparison to wild type, displayed increased seed yield leading to increased overall oil content per plant, higher root biomass and root length, significantly better tolerance to dehydration and heat stress, and enhanced resistance to necrotrophic fungal pathogens Leptosphaeria maculans and Sclerotinia sclerotiorum. Transcriptome analysis supported the integrated effects of BR on growth and stress responses; in addition to BR responses associated with growth, a predominant plant defense signature, likely mediated by BES1/BZR1, was evident in the transgenic plants. These results establish that BR can interactively and simultaneously enhance abiotic and biotic stress tolerance and plant productivity. The ability to confer pleiotropic beneficial effects that are associated with different agronomic traits suggests that BR-related genes may be important targets for simultaneously increasing plant productivity and performance under stress conditions. PMID:27324083

  5. Brassinosteroid's multi-modular interaction with the general stress network customizes stimulus-specific responses in Arabidopsis.

    Science.gov (United States)

    Bjornson, Marta; Dandekar, Abhaya M; Chory, Joanne; Dehesh, Katayoon

    2016-09-01

    Adaptation to fluctuating environmental conditions is a universal feature of plant life, governed by fundamental mechanisms optimizing resource allocation. This balance is achieved in part through tightly regulated communication networks among growth and stress response signaling pathways. Understanding the communication modules between brassinosteroids (BRs), the ubiquitous hormones known to control growth and stress adaptation, and the general stress response (GSR), a rapid and transient transcriptional output in response to perturbations, provides an optimal platform to unravel new facet(s) of plant stress adaptation. Here, we explore communication facets of BR with GSR via in planta quantification of the GSR in Arabidopsis expressing luciferase driven by a functional GSR cis-element, the Rapid Stress Response Element (4xRSRE:LUC). We establish that application of exogenous BR suppresses microbe-associated molecular pattern-activated GSR, but enhances the wound-triggered GSR. The enhanced wound-activated GSR in BR-treated plants results in a greater wound-induced resistance to Botrytis cinerea. A combination of molecular genetics using BR signaling mutants and application of an activator of BR signaling, bikinin, confirms these results and places the chief point of BR-GSR interaction downstream of potential membrane receptor circuitry. These results support a multi-modular interaction between BRs and stress signaling, instrumental in customizing stimulus-specific responses in Arabidopsis. PMID:27457993

  6. Organ-specific effects of brassinosteroids on stomatal production coordinate with the action of Too Many Mouths.

    Science.gov (United States)

    Wang, Ming; Yang, Kezhen; Le, Jie

    2015-03-01

    In Arabidopsis, stomatal development initiates after protodermal cells acquire stomatal lineage cell fate. Stomata or their precursors communicate with their neighbor epidermal cells to ensure the "one cell spacing" rule. The signals from EPF/EPFL peptide ligands received by Too Many Mouths (TMM) and ERECTA-family receptors are supposed to be transduced by YODA MAPK cascade. A basic helix-loop-helix transcription factor SPEECHLESS (SPCH) is another key regulator of stomatal cell fate determination and asymmetric entry divisions, and SPCH activity is regulated by YODA MAPK cascade. Brassinosteroid (BR) signaling, one of the most well characterized signal transduction pathways in plants, contributes to the control of stomatal production. But opposite organ-specific effects of BR on stomatal production were reported. Here we confirm that stomatal production in hypocotyls is controlled by BR levels. YODA and CYCD4 are not essential for BR stomata-promoting function. Furthermore, we found that BR could confer tmm hypocotyls clustered stomatal phenotype, indicating that the BR organ-specific effects on stomatal production might coordinate with the TMM organ-specific actions. PMID:25234048

  7. Genetic variation in plant CYP51s confers resistance against voriconazole, a novel inhibitor of brassinosteroid-dependent sterol biosynthesis.

    Science.gov (United States)

    Rozhon, Wilfried; Husar, Sigrid; Kalaivanan, Florian; Khan, Mamoona; Idlhammer, Markus; Shumilina, Daria; Lange, Theo; Hoffmann, Thomas; Schwab, Wilfried; Fujioka, Shozo; Poppenberger, Brigitte

    2013-01-01

    Brassinosteroids (BRs) are plant steroid hormones with structural similarity to mammalian sex steroids and ecdysteroids from insects. The BRs are synthesized from sterols and are essential regulators of cell division, cell elongation and cell differentiation. In this work we show that voriconazole, an antifungal therapeutic drug used in human and veterinary medicine, severely impairs plant growth by inhibiting sterol-14α-demethylation and thereby interfering with BR production. The plant growth regulatory properties of voriconazole and related triazoles were identified in a screen for compounds with the ability to alter BR homeostasis. Voriconazole suppressed growth of the model plant Arabidopsis thaliana and of a wide range of both monocotyledonous and dicotyledonous plants. We uncover that voriconazole toxicity in plants is a result of a deficiency in BRs that stems from an inhibition of the cytochrome P450 CYP51, which catalyzes a step of BR-dependent sterol biosynthesis. Interestingly, we found that the woodland strawberry Fragaria vesca, a member of the Rosaceae, is naturally voriconazole resistant and that this resistance is conferred by the specific CYP51 variant of F. vesca. The potential of voriconazole as a novel tool for plant research is discussed. PMID:23335967

  8. Interplay between mitogen-activated protein kinase and nitric oxide in brassinosteroid-induced pesticide metabolism in Solanum lycopersicum.

    Science.gov (United States)

    Yin, Yan-Ling; Zhou, Yue; Zhou, Yan-Hong; Shi, Kai; Zhou, Jie; Yu, Yunlong; Yu, Jing-Quan; Xia, Xiao-Jian

    2016-10-01

    Nitric oxide (NO) and mitogen-activated protein kinase (MPK) play important roles in brassinosteroid (BR)-induced stress tolerance, however, their functions in BR-induced pesticides metabolism remain unclear. Here, we showed that MPK activity and transcripts of SlMPK1 and SlMPK2 were induced by chlorothalonil (CHT), a widely used fungicide, in tomato leaves. However, cosilencing of SlMPK1/2 compromised the 24-epibrassinolide (EBR)-induced upregulation of detoxification genes and CHT metabolism in tomato leaves. In addition, cosilencing of SlMPK1/2 inhibited the accumulation of S-nitrosothiol (SNO), the reservoir of nitric oxide (NO) in plants, whereas tungstate, the inhibitor of nitrate reductase (NR), blocked EBR-induced SNO accumulation and MPK activity. Inhibiting the accumulation of NO by cPTIO, the specific scavenger and tungstate abolished the EBR-induced upregulation of detoxification genes, glutathione accumulation and CHT metabolism. The results showed that MPK and NR-dependent NO were involved in BR-induced CHT metabolism. Notably, there was a positive crosstalk between the MPK and NO production. PMID:27236431

  9. Ethylene is involved in brassinosteroids induced alternative respiratory pathway in cucumber (Cucumis sativus L. seedlings response to abiotic stress

    Directory of Open Access Journals (Sweden)

    Lijie eWei

    2015-11-01

    Full Text Available Effects of brassinosteroids (BRs on cucumber (Cucumis sativus L. abiotic stresses resistance to salt, polyethylene glycol (PEG, cold and the potential mechanisms were investigated in this work. Previous reports have indicated that BRs can induce ethylene production and enhance alternative oxidase (AOX pathway. The mechanisms whether ethylene is involved as a signal molecule which connected BR with AOX in regulating stress tolerance are still unknown. Here, we found that pretreatment with 1 µM brassinolide (BL, the most active BRs relieved stress-caused oxidative damage in cucumber seedlings and clearly enhanced the capacity of AOX and the ethylene biosynthesis. Furthermore, transcription level of ethylene signaling biosynthesis genes including ripening-related ACC synthase1 (CSACS1, ripening-related ACC synthase2 (CSACS2, ripening-related ACC synthase3 (CSACS3, 1-aminocyclopropane-1-carboxylate oxidase1 (CSACO1, 1-aminocyclopropane-1-carboxylate oxidase2 (CSACO2 and CSAOX were increased after BL treatment. Importantly, the application of the salicylhydroxamic acid (SHAM, AOX inhibitor and ethylene biosynthesis inhibitor aminooxyacetic acid (AOA decreased plant resistance to environmental stress by blocking BRs-induced alternative respiration. Taken together, our results demonstrated that ethylene was involved in BRs-induced AOX activity which played important roles in abiotic stresses tolerance in cucumber seedlings.

  10. Genetic variation in plant CYP51s confers resistance against voriconazole, a novel inhibitor of brassinosteroid-dependent sterol biosynthesis.

    Directory of Open Access Journals (Sweden)

    Wilfried Rozhon

    Full Text Available Brassinosteroids (BRs are plant steroid hormones with structural similarity to mammalian sex steroids and ecdysteroids from insects. The BRs are synthesized from sterols and are essential regulators of cell division, cell elongation and cell differentiation. In this work we show that voriconazole, an antifungal therapeutic drug used in human and veterinary medicine, severely impairs plant growth by inhibiting sterol-14α-demethylation and thereby interfering with BR production. The plant growth regulatory properties of voriconazole and related triazoles were identified in a screen for compounds with the ability to alter BR homeostasis. Voriconazole suppressed growth of the model plant Arabidopsis thaliana and of a wide range of both monocotyledonous and dicotyledonous plants. We uncover that voriconazole toxicity in plants is a result of a deficiency in BRs that stems from an inhibition of the cytochrome P450 CYP51, which catalyzes a step of BR-dependent sterol biosynthesis. Interestingly, we found that the woodland strawberry Fragaria vesca, a member of the Rosaceae, is naturally voriconazole resistant and that this resistance is conferred by the specific CYP51 variant of F. vesca. The potential of voriconazole as a novel tool for plant research is discussed.

  11. Arabidopsis MSBP1 Is Activated by HY5 and HYH and Is Involved in Photomorphogenesis and Brassinosteroid Sensitivity Regulation

    Institute of Scientific and Technical Information of China (English)

    Qiu-Ming Shi; Xi Yang; Li Song; Hong-Wei Xue

    2011-01-01

    Membrane Steroid Binding Protein 1 (MSBP1) can bind steroids in vitro and negatively regulates brassinosteroid (BR) signaling,as well as cell elongation and expansion.Detailed analysis of the MSBP1 expression pattern based on quantitative real-time RT-PCR and promoter-GUS fusion studies revealed that MSBP1 expression in hypocotyls is stimulated by various light conditions.Interestingly,MSBP1 expression is greatly suppressed in hy5,hyh,or hy5hyh mutants but enhanced in cop1 mutants.Further analysis employing a yeast one-hybrid assay,an electrophoretic mobility shift assay (EMSA),and a Chromatin IP (CHIP) assay confirmed the direct binding of Long Hypocotyl 5 (HY5) and HY5 Homolog (HYH)to the promoter region of MSBP1,indicating that MSBP1 is involved in light-regulated hypocotyl growth by serving as a direct target for HY5 and HYH.In addition,hy5 and hy5 hyh mutants show altered BR responses to light,which is consistent with the suppressed expression of MSBP1 in these mutants.These results suggest that light triggers MSBP1 expression through direct binding to and activation by HY5 and HYH,thereby inhibiting hypocotyl elongation.The findings also provide informative clues regarding the mechanisms for the negative regulation of BR sensitivity and photomorphogenesis during the dark-light transition.

  12. Antagonistic regulation of growth and immunity by the Arabidopsis basic helix-loop-helix transcription factor homolog of brassinosteroid enhanced expression2 interacting with increased leaf inclination1 binding bHLH1

    DEFF Research Database (Denmark)

    Malinovsky, Frederikke Gro; Batoux, Martine; Schwessinger, Benjamin;

    2014-01-01

    mechanisms is needed. Here, we identify the basic helix-loop-helix (bHLH) transcription factor homolog of brassinosteroid enhanced expression2 interacting with IBH1 (HBI1) as a negative regulator of PTI signaling in Arabidopsis (Arabidopsis thaliana). HBI1 expression is down-regulated in response to......Plants need to finely balance resources allocated to growth and immunity to achieve optimal fitness. A tradeoff between pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) and brassinosteroid (BR)-mediated growth was recently reported, but more information about the underlying...

  13. Wheat Brassinosteroid-Insensitive1 (TaBRI1) Interacts with Members of TaSERK Gene Family and Cause Early Flowering and Seed Yield Enhancement in Arabidopsis.

    Science.gov (United States)

    Singh, Akanksha; Breja, Priyanka; Khurana, Jitendra P; Khurana, Paramjit

    2016-01-01

    Brassinosteroids (BRs) hormones are important for plant growth, development and immune responses. They are sensed by the transmembrane receptor kinase Brassinosteroid-Insensitive 1 (BRI1) when they bind to its extracellular Leu-rich repeat (LRR) domain. We cloned and characterized the TaBRI1 from T. aestivum and raised overexpression transgenics in Arabidopsis to decipher its functional role. TaBRI1 protein consists of a putative signal peptide followed by 25 leucine rich repeats (LRR), a transmembrane domain and a C-terminal kinase domain. The analysis determined the interaction of TaBRI1 with five members of the wheat Somatic Embryogenesis Receptor Kinase (TaSERKs) gene family (TaSERK1, TaSERK2, TaSERK3, TaSERK4 and TaSERK5), at the plasma membrane. Furthermore, overexpression of TaBRI1 in Arabidopsis leads to the early flowering, increased silique size and seed yield. Root growth analysis of TaBRI1 overexpressing transgenic plants showed hypersensitivity to epi-brassinolide (epi-BL) hormone in a dose-dependent manner. Interestingly, transgenic Arabidopsis plants show thermotolerance phenotype at the seedling stages as revealed by chlorophyll content, photosystem II activity and membrane stability. The transcriptome profiling on the basis of microarray analysis indicates up-regulation of several genes related to brassinosteroid signaling pathway, abiotic stress response, defense response and transcription factors. These studies predict the possible role of TaBRI1 gene in plant growth and development imparting tolerance to thermal stress. PMID:27322749

  14. After-ripening induced transcriptional changes of hormonal genes in wheat seeds: the cases of brassinosteroids, ethylene, cytokinin and salicylic acid.

    Directory of Open Access Journals (Sweden)

    Vijaya R Chitnis

    Full Text Available Maintenance and release of seed dormancy is regulated by plant hormones; their levels and seed sensitivity being the critical factors. This study reports transcriptional regulation of brassinosteroids (BR, ethylene (ET, cytokinin (CK and salicylic acid (SA related wheat genes by after-ripening, a period of dry storage that decays dormancy. Changes in the expression of hormonal genes due to seed after-ripening did not occur in the anhydrobiotic state but rather in the hydrated state. After-ripening induced dormancy decay appears to be associated with imbibition mediated increase in the synthesis and signalling of BR, via transcriptional activation of de-etiolated2, dwarf4 and brassinosteroid signaling kinase, and repression of brassinosteroid insensitive 2. Our analysis is also suggestive of the significance of increased ET production, as reflected by enhanced transcription of 1-aminocyclopropane-1-carboxylic acid oxidase in after-ripened seeds, and tight regulation of seed response to ET in regulating dormancy decay. Differential transcriptions of lonely guy, zeatin O-glucosyltransferases and cytokinin oxidases, and pseudo-response regulator between dormant and after-ripened seeds implicate CK in the regulation of seed dormancy in wheat. Our analysis also reflects the association of dormancy decay in wheat with seed SA level and NPR independent SA signaling that appear to be regulated transcriptionally by phenylalanine ammonia lyase, and whirly and suppressor of npr1 inducible1 genes, respectively. Co-expression clustering of the hormonal genes implies the significance of synergistic and antagonistic interaction between the different plant hormones in regulating wheat seed dormancy. These results contribute to further our understanding of the molecular features controlling seed dormancy in wheat.

  15. Wheat Brassinosteroid-Insensitive1 (TaBRI1 Interacts with Members of TaSERK Gene Family and Cause Early Flowering and Seed Yield Enhancement in Arabidopsis.

    Directory of Open Access Journals (Sweden)

    Akanksha Singh

    Full Text Available Brassinosteroids (BRs hormones are important for plant growth, development and immune responses. They are sensed by the transmembrane receptor kinase Brassinosteroid-Insensitive 1 (BRI1 when they bind to its extracellular Leu-rich repeat (LRR domain. We cloned and characterized the TaBRI1 from T. aestivum and raised overexpression transgenics in Arabidopsis to decipher its functional role. TaBRI1 protein consists of a putative signal peptide followed by 25 leucine rich repeats (LRR, a transmembrane domain and a C-terminal kinase domain. The analysis determined the interaction of TaBRI1 with five members of the wheat Somatic Embryogenesis Receptor Kinase (TaSERKs gene family (TaSERK1, TaSERK2, TaSERK3, TaSERK4 and TaSERK5, at the plasma membrane. Furthermore, overexpression of TaBRI1 in Arabidopsis leads to the early flowering, increased silique size and seed yield. Root growth analysis of TaBRI1 overexpressing transgenic plants showed hypersensitivity to epi-brassinolide (epi-BL hormone in a dose-dependent manner. Interestingly, transgenic Arabidopsis plants show thermotolerance phenotype at the seedling stages as revealed by chlorophyll content, photosystem II activity and membrane stability. The transcriptome profiling on the basis of microarray analysis indicates up-regulation of several genes related to brassinosteroid signaling pathway, abiotic stress response, defense response and transcription factors. These studies predict the possible role of TaBRI1 gene in plant growth and development imparting tolerance to thermal stress.

  16. Polarization encoded color camera.

    Science.gov (United States)

    Schonbrun, Ethan; Möller, Guðfríður; Di Caprio, Giuseppe

    2014-03-15

    Digital cameras would be colorblind if they did not have pixelated color filters integrated into their image sensors. Integration of conventional fixed filters, however, comes at the expense of an inability to modify the camera's spectral properties. Instead, we demonstrate a micropolarizer-based camera that can reconfigure its spectral response. Color is encoded into a linear polarization state by a chiral dispersive element and then read out in a single exposure. The polarization encoded color camera is capable of capturing three-color images at wavelengths spanning the visible to the near infrared. PMID:24690806

  17. Negative Beta Encoder

    CERN Document Server

    Kohda, Tohru; Aihara, Kazuyuki

    2008-01-01

    A new class of analog-digital (A/D), digital-analog (D/A) converters as an alternative to conventional ones, called $\\beta$-encoder, has been shown to have exponential accuracy in the bit rates while possessing self-correction property for fluctuations of amplifier factor $\\beta$ and quantizer threshold $\

  18. Plasmids encoding therapeutic agents

    Science.gov (United States)

    Keener, William K.

    2007-08-07

    Plasmids encoding anti-HIV and anti-anthrax therapeutic agents are disclosed. Plasmid pWKK-500 encodes a fusion protein containing DP178 as a targeting moiety, the ricin A chain, an HIV protease cleavable linker, and a truncated ricin B chain. N-terminal extensions of the fusion protein include the maltose binding protein and a Factor Xa protease site. C-terminal extensions include a hydrophobic linker, an L domain motif peptide, a KDEL ER retention signal, another Factor Xa protease site, an out-of-frame buforin II coding sequence, the lacZ.alpha. peptide, and a polyhistidine tag. More than twenty derivatives of plasmid pWKK-500 are described. Plasmids pWKK-700 and pWKK-800 are similar to pWKK-500 wherein the DP178-encoding sequence is substituted by RANTES- and SDF-1-encoding sequences, respectively. Plasmid pWKK-900 is similar to pWKK-500 wherein the HIV protease cleavable linker is substituted by a lethal factor (LF) peptide-cleavable linker.

  19. OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.

    Directory of Open Access Journals (Sweden)

    Chao Yang

    2016-06-01

    Full Text Available OVATE gene was first identified as a key regulator of fruit shape in tomato. OVATE family proteins (OFPs are characterized as plant-specific transcription factors and conserved in Arabidopsis, tomato, and rice. Roles of OFPs involved in plant development and growth are largely unknown. Brassinosteroids (BRs are a class of steroid hormones involved in diverse biological functions. OsGKS2 plays a critical role in BR signaling by phosphorylating downstream components such as OsBZR1 and DLT. Here we report in rice that OsOFP8 plays a positive role in BR signaling pathway. BL treatment induced the expression of OsOFP8 and led to enhanced accumulation of OsOFP8 protein. The gain-of-function mutant Osofp8 and OsOFP8 overexpression lines showed enhanced lamina joint inclination, whereas OsOFP8 RNAi transgenic lines showed more upright leaf phenotype, which suggest that OsOFP8 is involved in BR responses. Further analyses indicated that OsGSK2 interacts with and phosphorylates OsOFP8. BRZ treatment resulted in the cytoplasmic distribution of OsOFP8, and bikinin treatment reduced the cytoplasmic accumulation of OsOFP8. Phosphorylation of OsOFP8 by OsGSK2 is needed for its nuclear export. The phospphorylated OsOFP8 shuttles to the cytoplasm and is targeted for proteasomal degradation. These results indicate that OsOFP8 is a substrate of OsGSK2 and the function of OsOFP8 in plant growth and development is at least partly through the BR signaling pathway.

  20. BES1 regulates the localization of the brassinosteroid receptor BRL3 within the provascular tissue of the Arabidopsis primary root.

    Science.gov (United States)

    Salazar-Henao, Jorge E; Lehner, Reinhard; Betegón-Putze, Isabel; Vilarrasa-Blasi, Josep; Caño-Delgado, Ana I

    2016-09-01

    Brassinosteroid (BR) hormones are important regulators of plant growth and development. Recent studies revealed the cell-specific role of BRs in vascular and stem cell development by the action of cell-specific BR receptor complexes and downstream signaling components in Arabidopsis thaliana Despite the importance of spatiotemporal regulation of hormone signaling in the control of plant vascular development, the mechanisms that confer cellular specificity to BR receptors within the vascular cells are not yet understood. The present work shows that BRI1-like receptor genes 1 and 3 (BRL1 and BRL3) are differently regulated by BRs. By using promoter deletion constructs of BRL1 and BRL3 fused to GFP/GUS (green fluorescent protein/β-glucuronidase) reporters in Arabidopsis, analysis of their cell-specific expression and regulation by BRs in the root apex has been carried out. We found that BRL3 expression is finely modulated by BRs in different root cell types, whereas the location of BRL1 appears to be independent of this hormone. Physiological and genetic analysis show a BR-dependent expression of BRL3 in the root meristem. In particular, BRL3 expression requires active BES1, a central transcriptional effector within the BRI1 pathway. ChIP analysis showed that BES1 directly binds to the BRRE present in the BRL3 promoter region, modulating its transcription in different subsets of cells of the root apex. Overall our study reveals the existence of a cell-specific negative feedback loop from BRI1-mediated BES1 transcription factor to BRL3 in phloem cells, while contributing to a general understanding of the spatial control of steroid signaling in plant development. PMID:27511026

  1. Využití brassinosteroidů k regulaci stresu během růstu a tvorby výnosu řepy cukrové

    Czech Academy of Sciences Publication Activity Database

    Hradecká, D.; Urban, J.; Kohout, Ladislav; Pulkrábek, J.; Hnilička, R.

    2009-01-01

    Roč. 125, 9/10 (2009), s. 271-273. ISSN 1210-3306 R&D Projects: GA AV ČR 1QS510680561 Institutional research plan: CEZ:AV0Z40550506 Keywords : sugar beet * yield * technological quality * brassinosteroids Subject RIV: CC - Organic Chemistry Impact factor: 0.645, year: 2009

  2. Synthesis of 2RS,4RS-1-[2-Phenyl-4-[2-(2-trifluromethoxy-phenoxy-ethyl]-1,3-dioxolan-2-yl-methyl]-1H-1,2,4-triazole Derivatives as Potent Inhibitors of Brassinosteroid Biosynthesis

    Directory of Open Access Journals (Sweden)

    Yuko Yoshizawa

    2012-04-01

    Full Text Available Brassinosteroids are important phytohormones that affect many aspects of plant growth and development. In order to manipulate brassinosteroid levels in plant tissues by using specific biosynthesis inhibitors, we have carried out a systemic search for specific inhibitors of brassinosteroid biosynthesis. Synthesis of triazole derivatives based on the ketoconazole scaffold revealed a series of novel brassinosteroid biosynthesis inhibitors (the YCZ series. To explore the structure-activity relationships of this synthetic series, we now report the synthesis of new triazole derivatives with different aromatic structures at position 2 of 1,3-dioxolane skeleton. We found that the variation of aromatic substituent significantly affect the inhibitory potency. Structure-activity relationships studies indicated that 4-chlorophenyl analogue is the most potent inhibitor of BR biosynthesis with an IC50 value approximately 0.12 ± 0.04 µM, while a bulky biphenyl group exhibited a great negative effect on promoting the inhibitory potency with an IC50 larger than 10 µM.

  3. Encoded combinatorial chemistry.

    OpenAIRE

    Brenner, S; Lerner, R A

    1992-01-01

    The diversity of chemical synthesis and the power of genetics are linked to provide a powerful, versatile method for drug screening. A process of alternating parallel combinatorial synthesis is used to encode individual members of a large library of chemicals with unique nucleotide sequences. After the chemical entity is bound to a target, the genetic tag can be amplified by replication and utilized for enrichment of the bound molecules by serial hybridization to a subset of the library. The ...

  4. Parallel encoders for pixel detectors

    International Nuclear Information System (INIS)

    A new method of fast encoding and determining the multiplicity and coordinates of fired pixels is described. A specific example construction of parallel encodes and MCC for n=49 and t=2 is given. 16 refs.; 6 figs.; 2 tabs

  5. Brassinosteroid Ameliorates Zinc Oxide Nanoparticles-Induced Oxidative Stress by Improving Antioxidant Potential and Redox Homeostasis in Tomato Seedling

    Science.gov (United States)

    Li, Mengqi; Ahammed, Golam J.; Li, Caixia; Bao, Xiao; Yu, Jingquan; Huang, Chunlei; Yin, Hanqin; Zhou, Jie

    2016-01-01

    In the last few decades use of metal-based nanoparticles (MNPs) has been increased significantly that eventually contaminating agricultural land and limiting crop production worldwide. Moreover, contamination of food chain with MNPs has appeared as a matter of public concern due to risk of potential health hazard. Brassinosteroid has been shown to play a critical role in alleviating heavy metal stress; however, its function in relieving zinc oxide nanoparticles (ZnO NPs)-induced phytotoxicity remains unknown. In this study, we investigated the potential role of 24-epibrassinolide (BR) in mitigating ZnO NPs-induced toxicity in tomato seedlings. Seedling growth, biomass production, and root activity gradually decreased, but Zn accumulation increased with increasing ZnO NPs concentration (10–100 mg/L) in growth media (½ MS). The augmentation of BR (5 nM) in media significantly ameliorated 50 mg/L ZnO NPs-induced growth inhibition. Visualization of hydrogen peroxide (H2O2), and quantification of H2O2 and malondialdehyde (MDA) in tomato roots confirmed that ZnO NPs induced an oxidative stress. However, combined treatment with BR and ZnO NPs remarkably reduced concentration of H2O2 and MDA as compared with ZnO NPs only treatment, indicating that BR supplementation substantially reduced oxidative stress. Furthermore, the activities of key antioxidant enzymes such as superoxide dismutase (SOD), catalase, ascorbate peroxidase and glutathione reductase were increased by combined treatment of BR and ZnO NPs compared with ZnO NPs only treatment. BR also increased reduced glutathione (GSH), but decreased oxidized glutathione (GSSG)] and thus improved cellular redox homeostasis by increasing GSH:GSSG ratio. The changes in relative transcript abundance of corresponding antioxidant genes such as Cu/Zn SOD, CAT1, GSH1, and GR1 were in accordance with the changes in those antioxidants under different treatments. More importantly, combined application of BR and ZnO NPs

  6. Chromium Stress Mitigation by Polyamine-Brassinosteroid Application Involves Phytohormonal and Physiological Strategies in Raphanus sativus L.

    Science.gov (United States)

    Choudhary, Sikander Pal; Kanwar, Mukesh; Bhardwaj, Renu; Yu, Jing-Quan; Tran, Lam-Son Phan

    2012-01-01

    Brassinosteroids (BRs) and polyamines (PAs) are well-established growth regulators playing key roles in stress management among plants. In the present study, we evaluated the effects of epibrassinolide (EBL, an active BR) and spermidine (Spd, an active PA) on the tolerance of radish to oxidative stress induced by Cr (VI) metal. Our investigation aimed to study the impacts of EBL (10−9 M) and/or Spd (1 mM) on the biochemical and physiological responses of radish (Raphanus sativus L.) under Cr-stress. Applications of EBL and/or Spd were found to improve growth of Cr-stressed seedlings in terms of root length, shoot length and fresh weight. Our data also indicated that applications of EBL and Spd have significant impacts, particularly when applied together, on the endogenous titers of PAs, free and bound forms of IAA and ABA in seedlings treated with Cr-stress. Additionally, co-applications of EBL and Spd modulated more remarkably the titers of antioxidants (glutathione, ascorbic acid, proline, glycine betaine and total phenol) and activities of antioxidant enzymes (guaicol peroxidase, catalase, superoxide dismutase and glutathione reductase) in Cr-stressed plants than their individual applications. Attenuation of Cr-stress by EBL and/or Spd (more efficient with EBL and Spd combination) was also supported by enhanced values of stress indices, such as phytochelatins, photosynthetic pigments and total soluble sugars, and reduction in malondialdehyde and H2O2 levels in Cr-treated seedlings. Diminution of ROS production and enhanced ROS scavenging capacities were also noted for EBL and/or Spd under Cr-stress. However, no significant reduction in Cr uptake was observed for co-application of EBL and Spd when compared to their individual treatments in Cr-stressed seedlings. Taken together, our results demonstrate that co-applications of EBL and Spd are more effective than their independent treatments in lowering the Cr-induced oxidative stress in radish, leading to

  7. Chromium stress mitigation by polyamine-brassinosteroid application involves phytohormonal and physiological strategies in Raphanus sativus L.

    Directory of Open Access Journals (Sweden)

    Sikander Pal Choudhary

    Full Text Available Brassinosteroids (BRs and polyamines (PAs are well-established growth regulators playing key roles in stress management among plants. In the present study, we evaluated the effects of epibrassinolide (EBL, an active BR and spermidine (Spd, an active PA on the tolerance of radish to oxidative stress induced by Cr (VI metal. Our investigation aimed to study the impacts of EBL (10(-9 M and/or Spd (1 mM on the biochemical and physiological responses of radish (Raphanus sativus L. under Cr-stress. Applications of EBL and/or Spd were found to improve growth of Cr-stressed seedlings in terms of root length, shoot length and fresh weight. Our data also indicated that applications of EBL and Spd have significant impacts, particularly when applied together, on the endogenous titers of PAs, free and bound forms of IAA and ABA in seedlings treated with Cr-stress. Additionally, co-applications of EBL and Spd modulated more remarkably the titers of antioxidants (glutathione, ascorbic acid, proline, glycine betaine and total phenol and activities of antioxidant enzymes (guaicol peroxidase, catalase, superoxide dismutase and glutathione reductase in Cr-stressed plants than their individual applications. Attenuation of Cr-stress by EBL and/or Spd (more efficient with EBL and Spd combination was also supported by enhanced values of stress indices, such as phytochelatins, photosynthetic pigments and total soluble sugars, and reduction in malondialdehyde and H(2O(2 levels in Cr-treated seedlings. Diminution of ROS production and enhanced ROS scavenging capacities were also noted for EBL and/or Spd under Cr-stress. However, no significant reduction in Cr uptake was observed for co-application of EBL and Spd when compared to their individual treatments in Cr-stressed seedlings. Taken together, our results demonstrate that co-applications of EBL and Spd are more effective than their independent treatments in lowering the Cr-induced oxidative stress in radish, leading

  8. Brassinosteroid Enhances Cold Stress Tolerance of Washington Navel Orange (Citrus sinensis L. Fruit by Regulating Antioxidant Enzymes During Storage

    Directory of Open Access Journals (Sweden)

    Bahareh Ghorbani

    2014-10-01

    Full Text Available Normal 0 false false false EN-US X-NONE FA MicrosoftInternetExplorer4 Normal 0 false false false EN-US X-NONE FA MicrosoftInternetExplorer4 The effect of brassinosteroid (BR on chilling injury of Washington Navel orange (Citrus sinensis L. fruit was investigated. BR at the concentrations of 0.75 and 1.5 ppm effectively reduced chilling injury of Washington Navel orange fruit during five months storage at 3°C, and BR at 1.5 ppm showed the best effect. BR treatment also reduced the lipid peroxidaion and peroxide hydrogen content of peel and pulp during storage. Results of physiological response in orange fruit showed that BR induced the activity of antioxidant enzymes including catalase and peroxidase. These results indicate that the elicitation of an antioxidant response in orange fruit by BR may be associated with chilling injury alleviation. Moreover, BR maintained the orange quality by decrease of lipid peroxidation and peroxide hydrogen content. The present study is the first evidence that BR enhances orange fruit tolerance to cold stress and therefore fruit quality. /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:Arial; mso-bidi-theme-font:minor-bidi;}

  9. Security Analysis of PHP Encoder

    Directory of Open Access Journals (Sweden)

    Chunlong Yao

    2013-10-01

    Full Text Available As an open source server-side scripts language, PHP is used more and more widely by Web developers now. Protecting PHP code from being plagiarized is also a hot research issue especially with the rapid development of dynamic web industry and people’s copyright protection consciousness. Usually the developers use PHP encoders to encrypt the PHP codes before selling them out. There are several different kinds of PHP encoders with different performances. In this paper, we analyze and compare the security level of some well-known encoders. From a fully new aspect, we try to analyze the output of the encoders with the random statistical tests, which is never done before. Also, we demonstrate the soundness of our method. We figure out the test suite which is most suitable for PHP encoders and explain the reasons. Finally, we carry out the experiments and draw a conclusion about the security of the PHP encoders based on our results

  10. Vliv brassinosteroidů na vybrané fotosyntetické a morfologické charakteristiky u různých genotypů kukuřice vystavených chladu

    Czech Academy of Sciences Publication Activity Database

    Rothová, O.; Holá, D.; Kočová, M.; Bartáková, J.; Benešová, M.; Kohout, Ladislav

    Praha: Česká zemědělská univerzita v Praze, 2006, s. 67-71. [Vliv abiotických a biotických stresorů na vlastnosti rostlin 2006. Praha (CZ), 17.05.2006] R&D Projects: GA AV ČR KJB601110611 Institutional research plan: CEZ:AV0Z40550506 Keywords : brassinosteroids * photosynthetic and morphological changes * chilling conditions Subject RIV: CC - Organic Chemistry

  11. Anticancer Activities of Brassinosteroids

    Czech Academy of Sciences Publication Activity Database

    Hoffmannová, Lucie; Oklešťková, Jana; Steigerová, J.; Kohout, Ladislav; Kolář, Z.; Strnad, Miroslav

    AG Bussum : Bentham Science, 2012 - (Pereira-Netto, A.), s. 84-93 ISBN 978-1-60805-298-1 Grant ostatní: GA AV ČR(CZ) IAA400550801 Institutional research plan: CEZ:AV0Z50380511 Keywords : antiangiogenic activity * anticancer drugs * apoptosis Subject RIV: CC - Organic Chemistry http://home.ueb.cas.cz/publikace/2012_Strnad_chapter.pdf

  12. Peri-encoding predictors of memory encoding and consolidation.

    Science.gov (United States)

    Cohen, Noga; Pell, Liat; Edelson, Micah G; Ben-Yakov, Aya; Pine, Alex; Dudai, Yadin

    2015-03-01

    We review reports of brain activations that occur immediately prior to the onset or following the offset of to-be-remembered information and can predict subsequent mnemonic success. Memory-predictive pre-encoding processes, occurring from fractions of a second to minutes prior to event onset, are mainly associated with activations in the medial temporal lobe (MTL), amygdala and midbrain, and with enhanced theta oscillations. These activations may be considered as the neural correlates of one or more cognitive operations, including contextual processing, attention, and the engagement of distinct computational modes associated with prior encoding or retrieval. Post-encoding activations that correlate with subsequent memory performance are mainly observed in the MTL, sensory cortices and frontal regions. These activations may reflect binding of elements of the encoded information and initiation of memory consolidation. In all, the findings reviewed here illustrate the importance of brain states in the immediate peri-encoding time windows in determining encoding success. Understanding these brain states and their specific effects on memory may lead to optimization of the encoding of desired memories and mitigation of undesired ones. PMID:25446944

  13. Evolutionary, Comparative and Functional Analyses of the Brassinosteroid Receptor Gene, BRI1, in Wheat and Its Relation to Other Plant Genomes.

    Directory of Open Access Journals (Sweden)

    Christopher Navarro

    Full Text Available Brassinosteroids (BRs are plant hormones, fundamental for the growth and development of plants. A trans-membrane protein receptor kinase, Brassinosteroid-Insensitive 1 (BRI1, is known to interact with BRs and be directly involved in plant development. This study investigates the structural organization of BRI1 orthologs in several taxa, with a specific interest in Triticum aestivum. True orthologs of Arabidopsis thaliana BRI1 (AtBRI1 from seven-plant species showed sequence identity ranging from 54% to 95% at the protein level. All gene sequences lacked introns, leading to speculation that post-transcriptional processing in TaBRI1 is similar to AtBRI1. Based on in silico analysis, a single copy of BRI1 was present in each of the three wheat genomes on the long arm of chromosome 3. Domain structure of BRI1 orthologs among different taxa showed multiple leucine rich repeats (LRRs, an island domain (ID, a juxtamembrane/transmembrane domain (JTMD, a catalytic kinase domain (KD, C and N-Terminal domains. The KD showed the highest level of conservation while the LRRs and JTMD were most variable. Phosphorylation of residues in the juxtamembrane domain, known to be involved in the activation of the KD, is conserved in TaBRI1. While TaBRI1 has well-defined differences in the ID and LRR domains, many residues involved in ligand binding are conserved. The activation loop present in the KD showed 100% conservation in all taxa. Despite residue differences, hydrophobicity was conserved in the BR binding pocket across taxa, suggesting that function may not differ as drastically as residue identity may suggest. Predicted 3D structure of AtBRI1 and TaBRI1 showed a conserved super helical assembly, a feature essential in protein-protein interactions. An unrooted phylogram showed TaBRI1 in the monocot clade to be distinct from that of dicots. New insight in the structure and functions of BRI1 may help in targeting BR pathway for crop improvement.

  14. Self-Organising Stochastic Encoders

    CERN Document Server

    Luttrell, Stephen

    2010-01-01

    The processing of mega-dimensional data, such as images, scales linearly with image size only if fixed size processing windows are used. It would be very useful to be able to automate the process of sizing and interconnecting the processing windows. A stochastic encoder that is an extension of the standard Linde-Buzo-Gray vector quantiser, called a stochastic vector quantiser (SVQ), includes this required behaviour amongst its emergent properties, because it automatically splits the input space into statistically independent subspaces, which it then separately encodes. Various optimal SVQs have been obtained, both analytically and numerically. Analytic solutions which demonstrate how the input space is split into independent subspaces may be obtained when an SVQ is used to encode data that lives on a 2-torus (e.g. the superposition of a pair of uncorrelated sinusoids). Many numerical solutions have also been obtained, using both SVQs and chains of linked SVQs: (1) images of multiple independent targets (encod...

  15. Cell encoding recombinant human erythropoietin

    Energy Technology Data Exchange (ETDEWEB)

    Beck, A.K.; Withy, R.M.; Zabrecky, J.R.; Masiello, N.C.

    1990-09-04

    This patent describes a C127 cell transformed with a recombinant DNA vector. It comprises: a DNA sequence encoding human erythropoietin, the transformed cell being capable of producing N-linked and O-linked glycosylated human erythropoietin.

  16. Polymorphisms of mitochondrially encoded proteins.

    OpenAIRE

    Spinner, N B; King, M. C.

    1986-01-01

    Polymorphisms of mitochondrially encoded proteins can be detected in human lymphocytes by sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Using an SDS-polyacrylamide 8 M urea system, 17 mitochondrially encoded proteins are distinguishable. Three of these (ME-6, ME-8, and ME-17) were polymorphic among 92 individuals screened, and these polymorphisms are reported here for the first time. With SDS-polyacrylamide electrophoresis without urea, 18 mitochondrial proteins are de...

  17. Security Analysis of PHP Encoder

    OpenAIRE

    Chunlong Yao; Fengjiao Yin; Xu Li; Fenglong Fan

    2013-01-01

    As an open source server-side scripts language, PHP is used more and more widely by Web developers now. Protecting PHP code from being plagiarized is also a hot research issue especially with the rapid development of dynamic web industry and people’s copyright protection consciousness. Usually the developers use PHP encoders to encrypt the PHP codes before selling them out. There are several different kinds of PHP encoders with different performances. In this paper, we analyze and compa...

  18. The antagonistic regulation of abscisic acid-inhibited root growth by brassinosteroids is partially mediated via direct suppression of ABSCISIC ACID INSENSITIVE 5 expression by BRASSINAZOLE RESISTANT 1.

    Science.gov (United States)

    Yang, Xiaorui; Bai, Yang; Shang, Jianxiu; Xin, Ruijiao; Tang, Wenqiang

    2016-09-01

    Brassinosteroids (BRs) and abscisic acid (ABA) are plant hormones that antagonistically regulate many aspects of plant growth and development; however, the mechanisms that regulate the crosstalk of these two hormones are still not well understood. BRs regulate plant growth and development by activating BRASSINAZOLE RESISTANT 1 (BZR1) family transcription factors. Here we show that the crosstalk between BRs and ABA signalling is partially mediated by BZR1 regulated gene expression. bzr1-1D is a dominant mutant with enhanced BR signalling; our results showed that bzr1-1D mutant is less sensitive to ABA-inhibited primary root growth. By RNA sequencing, a subset of BZR1 regulated ABA-responsive root genes were identified. Of these genes, the expression of a major ABA signalling component ABA INSENSITIVE 5 (ABI5) was found to be suppressed by BR and by BZR1. Additional evidences showed that BZR1 could bind strongly with several G-box cis-elements in the promoter of ABI5, suppress the expression of ABI5 and make plants less sensitive to ABA. Our study demonstrated that ABI5 is a direct target gene of BZR1, and modulating the expression of ABI5 by BZR1 plays important roles in regulating the crosstalk between the BR and ABA signalling pathways. PMID:27149247

  19. Brassinosteroid-induced CO2 assimilation is associated with increased stability of redox-sensitive photosynthetic enzymes in the chloroplasts in cucumber plants

    International Nuclear Information System (INIS)

    Highlights: ► Activity of certain Calvin cycle enzymes and CO2 assimilation are induced by BRs. ► BRs upregulate the activity of the ascorbate–glutathione cycle in the chloroplasts. ► BRs increase the chloroplast thiol reduction state. ► A BR-induced reducing environment increases the stability of photosynthetic enzymes. -- Abstract: Brassinosteroids (BRs) play important roles in plant growth, development, photosynthesis and stress tolerance; however, the mechanism underlying BR-enhanced photosynthesis is currently unclear. Here, we provide evidence that an increase in the BR level increased the quantum yield of PSII, activities of Rubisco activase (RCA) and fructose-1,6-bisphosphatase (FBPase), and CO2 assimilation. BRs upregulated the transcript levels of genes and activity of enzymes involved in the ascorbate–glutathione cycle in the chloroplasts, leading to an increased ratio of reduced (GSH) to oxidized (GSSG) glutathione in the chloroplasts. An increased GSH/GSSG ratio protected RCA from proteolytic digestion and increased the stability of redox-sensitive enzymes in the chloroplasts. These results strongly suggest that BRs are capable of regulating the glutathione redox state in the chloroplasts through the activation of the ascorbate–glutathione cycle. The resulting increase in the chloroplast thiol reduction state promotes CO2 assimilation, at least in part, by enhancing the stability and activity of redox-sensitive photosynthetic enzymes through post-translational modifications.

  20. Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.

    Science.gov (United States)

    Lee, Shinyoung; Choi, Sang Chul; An, Gynheung

    2008-04-01

    Most short vegetative phase (SVP)-group MADS-box genes control meristem identity and flowering time. Among the three SVP-group genes in rice, OsMADS47 has been reported as a negative regulator of brassinosteroid (BR) responses. Here, we investigated the functional roles of two close homologs, OsMADS22 and OsMADS55, by generating single, double and triple RNAi lines and overexpression lines. Analyses of the plants showed that their roles in regulating meristem identity are well conserved; however, the involvement of these genes in determining flowering time has diversified. Most importantly, OsMADS55 works as a major negative regulator of BR responses, and OsMADS22 functions to support OsMADS55. Whereas single OsMADS55 RNAi plants display weak BR responses in the lamina joint (LJ), OsMADS22-OsMADS55 double and OsMADS22-OsMADS47-OsMADS55 triple RNAi plants manifest dramatic BR responses with regard to LJ inclination, coleoptile elongation and senescence. Stem elongation is also notably reduced in the double and triple RNAi plants, probably because of BR oversensitivity. Expression analyses indicate the diversified roles in age-dependent BR responses. Altogether, our study demonstrates that all three rice SVP-group genes work as negative regulators of BR responses, but that their spatial and temporal roles are diversified. PMID:18182025

  1. The Brassinosteroid Signaling Pathway—New Key Players and Interconnections with Other Signaling Networks Crucial for Plant Development and Stress Tolerance

    Directory of Open Access Journals (Sweden)

    Damian Gruszka

    2013-04-01

    Full Text Available Brassinosteroids (BRs are a class of steroid hormones regulating a wide range of physiological processes during the plant life cycle from seed development to the modulation of flowering and senescence. The last decades, and recent years in particular, have witnessed a significant advance in the elucidation of the molecular mechanisms of BR signaling from perception by the transmembrane receptor complex to the regulation of transcription factors influencing expression of the target genes. Application of the new approaches shed light on the molecular functions of the key players regulating the BR signaling cascade and allowed identification of new factors. Recent studies clearly indicated that some of the components of BR signaling pathway act as multifunctional proteins involved in other signaling networks regulating diverse physiological processes, such as photomorphogenesis, cell death control, stomatal development, flowering, plant immunity to pathogens and metabolic responses to stress conditions, including salinity. Regulation of some of these processes is mediated through a crosstalk between BR signalosome and the signaling cascades of other hormones, including auxin, abscisic acid, ethylene and salicylic acid. Unravelling the complicated mechanisms of BR signaling and its interconnections with other molecular networks may be of great importance for future practical applications in agriculture.

  2. The brassinosteroid signaling pathway-new key players and interconnections with other signaling networks crucial for plant development and stress tolerance.

    Science.gov (United States)

    Gruszka, Damian

    2013-01-01

    Brassinosteroids (BRs) are a class of steroid hormones regulating a wide range of physiological processes during the plant life cycle from seed development to the modulation of flowering and senescence. The last decades, and recent years in particular, have witnessed a significant advance in the elucidation of the molecular mechanisms of BR signaling from perception by the transmembrane receptor complex to the regulation of transcription factors influencing expression of the target genes. Application of the new approaches shed light on the molecular functions of the key players regulating the BR signaling cascade and allowed identification of new factors. Recent studies clearly indicated that some of the components of BR signaling pathway act as multifunctional proteins involved in other signaling networks regulating diverse physiological processes, such as photomorphogenesis, cell death control, stomatal development, flowering, plant immunity to pathogens and metabolic responses to stress conditions, including salinity. Regulation of some of these processes is mediated through a crosstalk between BR signalosome and the signaling cascades of other hormones, including auxin, abscisic acid, ethylene and salicylic acid. Unravelling the complicated mechanisms of BR signaling and its interconnections with other molecular networks may be of great importance for future practical applications in agriculture. PMID:23615468

  3. Brassinazole resistant 1 (BZR1)-dependent brassinosteroid signalling pathway leads to ectopic activation of quiescent cell division and suppresses columella stem cell differentiation.

    Science.gov (United States)

    Lee, Hak-Soo; Kim, Yoon; Pham, Giang; Kim, Ju Won; Song, Ji-Hye; Lee, Yew; Hwang, Yong-Sic; Roux, Stanley J; Kim, Soo-Hwan

    2015-08-01

    Previous publications have shown that BRI1 EMS suppressor 1 (BES1), a positive regulator of the brassinosteroid (BR) signalling pathway, enhances cell divisions in the quiescent centre (QC) and stimulates columella stem cell differentiation. Here, it is demonstrated that BZR1, a BES1 homologue, also promotes cell divisions in the QC, but it suppresses columella stem cell differentiation, opposite to the action of BES1. In addition, BR and its BZR1-mediated signalling pathway are shown to alter the expression/subcellular distribution of pin-formed (PINs), which may result in changes in auxin movement. BR promotes intense nuclear accumulation of BZR1 in the root tip area, and the binding of BZR1 to the promoters of several root development-regulating genes, modulating their expression in the root stem cell niche area. These BZR1-mediated signalling cascades may account for both the ectopic activation of QC cell divisions as well as the suppression of the columella stem cell differentiation. They could also inhibit auxin-dependent distal stem cell differentiation by antagonizing the auxin/WOX5-dependent pathway. In conclusion, BZR1-/BES1-mediated BR signalling pathways show differential effects on the maintenance of root apical meristem activities: they stimulate ectopic QC division while they show opposite effects on the differentiation of distal columella stem cells in a BR concentration- and BZR1-/BES1-dependent manner. PMID:26136267

  4. Brassinosteroid-induced CO{sub 2} assimilation is associated with increased stability of redox-sensitive photosynthetic enzymes in the chloroplasts in cucumber plants

    Energy Technology Data Exchange (ETDEWEB)

    Jiang, Yu Ping; Cheng, Fei; Zhou, Yan Hong; Xia, Xiao Jian; Mao, Wei Hua; Shi, Kai [Department of Horticulture, Zijingang Campus, Zhejiang University, Yuhangtang Road 866, Hangzhou 310058 (China); Chen, Zhi Xiang [Department of Horticulture, Zijingang Campus, Zhejiang University, Yuhangtang Road 866, Hangzhou 310058 (China); Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907-2054 (United States); Yu, Jing Quan, E-mail: jqyu@zju.edu.cn [Department of Horticulture, Zijingang Campus, Zhejiang University, Yuhangtang Road 866, Hangzhou 310058 (China); Key Laboratory of Horticultural Plants Growth, Development and Quality Improvement, Ministry of Agriculture of China, Yuhangtang Road 866, Hangzhou 310058 (China)

    2012-09-28

    Highlights: Black-Right-Pointing-Pointer Activity of certain Calvin cycle enzymes and CO{sub 2} assimilation are induced by BRs. Black-Right-Pointing-Pointer BRs upregulate the activity of the ascorbate-glutathione cycle in the chloroplasts. Black-Right-Pointing-Pointer BRs increase the chloroplast thiol reduction state. Black-Right-Pointing-Pointer A BR-induced reducing environment increases the stability of photosynthetic enzymes. -- Abstract: Brassinosteroids (BRs) play important roles in plant growth, development, photosynthesis and stress tolerance; however, the mechanism underlying BR-enhanced photosynthesis is currently unclear. Here, we provide evidence that an increase in the BR level increased the quantum yield of PSII, activities of Rubisco activase (RCA) and fructose-1,6-bisphosphatase (FBPase), and CO{sub 2} assimilation. BRs upregulated the transcript levels of genes and activity of enzymes involved in the ascorbate-glutathione cycle in the chloroplasts, leading to an increased ratio of reduced (GSH) to oxidized (GSSG) glutathione in the chloroplasts. An increased GSH/GSSG ratio protected RCA from proteolytic digestion and increased the stability of redox-sensitive enzymes in the chloroplasts. These results strongly suggest that BRs are capable of regulating the glutathione redox state in the chloroplasts through the activation of the ascorbate-glutathione cycle. The resulting increase in the chloroplast thiol reduction state promotes CO{sub 2} assimilation, at least in part, by enhancing the stability and activity of redox-sensitive photosynthetic enzymes through post-translational modifications.

  5. Gravity referenced elevation encoder development

    Science.gov (United States)

    Goddard, R. E.

    1993-05-01

    Recent progress in the development of a gravity-sensor-based instrument for determining the elevation angle of DSN antennas is described. The benefits of such a system include the capability to locate the Gravity Referenced Elevation Encoder (GREE) directly on the primary reflector (thus bypassing structural flexure and deformation error sources), anticipated lower maintenance costs compared to the present gimbal encoders, direct replaceability, or supplementation of the present gimbal encoders and the utilization of off-the-shelf components to construct the GREE. This article includes a description of the nominal GREE design. Test results on a laboratory breadboard model are given. Rigid-body dynamics of the GREE are derived and the simulated performance in response to measured antenna vibrations is given.

  6. Fly Photoreceptors Encode Phase Congruency

    Science.gov (United States)

    Friederich, Uwe; Billings, Stephen A.; Hardie, Roger C.; Juusola, Mikko; Coca, Daniel

    2016-01-01

    More than five decades ago it was postulated that sensory neurons detect and selectively enhance behaviourally relevant features of natural signals. Although we now know that sensory neurons are tuned to efficiently encode natural stimuli, until now it was not clear what statistical features of the stimuli they encode and how. Here we reverse-engineer the neural code of Drosophila photoreceptors and show for the first time that photoreceptors exploit nonlinear dynamics to selectively enhance and encode phase-related features of temporal stimuli, such as local phase congruency, which are invariant to changes in illumination and contrast. We demonstrate that to mitigate for the inherent sensitivity to noise of the local phase congruency measure, the nonlinear coding mechanisms of the fly photoreceptors are tuned to suppress random phase signals, which explains why photoreceptor responses to naturalistic stimuli are significantly different from their responses to white noise stimuli. PMID:27336733

  7. Virally encoded 7TM receptors

    DEFF Research Database (Denmark)

    Rosenkilde, M M; Waldhoer, M; Lüttichau, H R; Schwartz, T W

    2001-01-01

    A number of herpes- and poxviruses encode 7TM G-protein coupled receptors most of which clearly are derived from their host chemokine system as well as induce high expression of certain 7TM receptors in the infected cells. The receptors appear to be exploited by the virus for either immune evasion...... expression of this single gene in certain lymphocyte cell lineages leads to the development of lesions which are remarkably similar to Kaposi's sarcoma, a human herpesvirus 8 associated disease. Thus, this and other virally encoded 7TM receptors appear to be attractive future drug targets....

  8. ZmMPK5 is required for the NADPH oxidase-mediated self-propagation of apoplastic H2O2 in brassinosteroid-induced antioxidant defence in leaves of maize

    OpenAIRE

    Zhang, Aying; Zhang, Jun; Ye, Nenghui; Cao, Jianmei; Tan, Mingpu; Zhang, Jianhua; Jiang, Mingyi

    2010-01-01

    Brassinosteroids (BRs) have been shown to induce hydrogen peroxide (H2O2) accumulation, and BR-induced H2O2 up-regulates antioxidant defence systems in plants. However, the mechanisms by which BR-induced H2O2 regulates antioxidant defence systems in plants remain to be determined. In the present study, the role of ZmMPK5, a mitogen-activated protein kinase, in BR-induced anitioxidant defence and the relationship between the activation of ZmMPK5 and H2O2 production in BR signalling were invest...

  9. Encoding Standards for Linguistic Corpora.

    Science.gov (United States)

    Ide, Nancy

    The demand for extensive reusability of large language text collections for natural languages processing research requires development of standardized encoding formats. Such formats must be capable of representing different kinds of information across the spectrum of text types and languages, capable of representing different levels of…

  10. Encoding, symbolic dynamics, cryptography and C++ implementations

    International Nuclear Information System (INIS)

    We investigate three techniques which can be used to encode information using certain types of chaotic maps and provide implementations in C++. One of the three, the variable bit length encoding technique, is a new technique for encoding information using transient chaos. We describe all three techniques, including variable bit length encoding, in detail. Finally we investigate the use of the variable bit length encoding technique as a cryptographic scheme

  11. Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice

    Science.gov (United States)

    Liu, Jing Miao; Park, Soon Ju; Huang, Jin; Lee, Eun Jin; Xuan, Yuan Hu; Je, Byoung Il; Kumar, Vikranth; Priatama, Ryza A.; Raj K, Vimal; Kim, Sung Hoon; Min, Myung Ki; Cho, Jun Hyeon; Kim, Tae Ho; Chandran, Anil Kumar Nalini; Jung, Ki Hong; Takatsuto, Suguru; Fujioka, Shozo; Han, Chang-deok

    2016-01-01

    Lamina inclination is a key agronomical character that determines plant architecture and is sensitive to auxin and brassinosteroids (BRs). Loose Plant Architecture1 (LPA1) in rice (Oryza sativa) and its Arabidopsis homologues (SGR5/AtIDD15) have been reported to control plant architecture and auxin homeostasis. This study explores the role of LPA1 in determining lamina inclination in rice. LPA1 acts as a positive regulator to suppress lamina bending. Genetic and biochemical data indicate that LPA1 suppresses the auxin signalling that interacts with C-22-hydroxylated and 6-deoxo BRs, which regulates lamina inclination independently of OsBRI1. Mutant lpa1 plants are hypersensitive to indole-3-acetic acid (IAA) during the lamina inclination response, which is suppressed by the brassinazole (Brz) inhibitor of C-22 hydroxylase involved in BR synthesis. A strong synergic effect is detected between lpa1 and d2 (the defective mutant for catalysis of C-23-hydroxylated BRs) during IAA-mediated lamina inclination. No significant interaction between LPA1 and OsBRI1 was identified. The lpa1 mutant is sensitive to C-22-hydroxylated and 6-deoxo BRs in the d61-1 (rice BRI1 mutant) background. We present evidence verifying that two independent pathways function via either BRs or BRI1 to determine IAA-mediated lamina inclination in rice. RNA sequencing analysis and qRT-PCR indicate that LPA1 influences the expression of three OsPIN genes (OsPIN1a, OsPIN1c and OsPIN3a), which suggests that auxin flux might be an important factor in LPA1-mediated lamina inclination in rice. PMID:26826218

  12. Synaptic encoding of temporal contiguity

    OpenAIRE

    Srdjan Ostojic; Stefano Fusi

    2013-01-01

    Often we need to perform tasks in an environment that changes stochastically. In these situations it is important to learn the statistics of sequences of events in order to predict the future and the outcome of our actions. The statistical description of many of these sequences can be reduced to the set of probabilities that a particular event follows another event (temporal contiguity). Under these conditions, it is important to encode and store in our memory these transition probabilities. ...

  13. SNOMED CT® Encoded Cancer Protocols

    OpenAIRE

    van Berkum, Monique M.

    2003-01-01

    SNOMED Clinical Terms® (SNOMED CT®) is being used to encode the Cancer Protocols published by the College of American Pathologists (CAP). As of January 1, 2004, one of the standards set for approved cancer programs by the American College of Surgeons Commission on Cancer will be that at least 90% of surgical pathology reports contain all essential data elements identified in the CAP Cancer Protocols.

  14. Hall effect encoding of brushless dc motors

    Science.gov (United States)

    Berard, C. A.; Furia, T. J.; Goldberg, E. A.; Greene, R. C.

    1970-01-01

    Encoding mechanism integral to the motor and using the permanent magnets embedded in the rotor eliminates the need for external devices to encode information relating the position and velocity of the rotating member.

  15. Variational Recurrent Auto-Encoders

    OpenAIRE

    Fabius, Otto; van Amersfoort, Joost R.

    2014-01-01

    In this paper we propose a model that combines the strengths of RNNs and SGVB: the Variational Recurrent Auto-Encoder (VRAE). Such a model can be used for efficient, large scale unsupervised learning on time series data, mapping the time series data to a latent vector representation. The model is generative, such that data can be generated from samples of the latent space. An important contribution of this work is that the model can make use of unlabeled data in order to facilitate supervised...

  16. Determination of endogenous brassinosteroids using sequential magnetic solid phase extraction followed by in situ derivatization/desorption method coupled with liquid chromatography-tandem mass spectrometry.

    Science.gov (United States)

    Ding, Jun; Mao, Li-Jing; Guo, Ning; Yu, Lei; Feng, Yu-Qi

    2016-05-13

    In this study, a sequential magnetic solid phase extraction followed by in situ derivatization/desorption method was proposed for the fast, selective and sensitive determination of brassinosteroids (BRs) in plant tissues. Magnetic sorbent for quick, easy, cheap, effective, rugged and safe method (mQuEChERS) and polymer(4-vinylphenylboronic acid-co-ethylene glycol dimethacrylate) coated Fe3O4@SiO2 (p(4-VPBA-co-EGDMA) coated Fe3O4@SiO2) were prepared and characterized. Using them as sorbents, pigments and hydrophilic interferents were firstly removed from plant extract by mQuEChERS, and then endogenous BRs were selectively enriched by p(4-VPBA-co-EGDMA) coated Fe3O4@SiO2 through boronate affinity interaction. After loading BRs on p(4-VPBA-co-EGDMA) coated Fe3O4@SiO2, instead of directly eluting free BRs, the adsorbed BRs were released by adding 4-(N,N-dimethyamino)phenylboronic acid (4-DMAPBA) solution for in situ derivatizaiton/desorption of BRs based on a transesterification reaction between the boronate moieties of p(4-VPBA-co-EGDMA) coated Fe3O4@SiO2 and 4-DMAPBA, finally the resultant solution was submitted to LC-MS/MS for quantification. The whole procedure of the sequential MSPE could be accomplished within 1h, and the matrix effect to MS signal after the sample pretreatment was estimated to be in the range of 93.0-97.4%. The established method provided broad linear dynamics ranges (1.0-100.0pg/mL) with correlation coefficients (R) >0.9978, substantial sensitivity (limits of detection ranged from 0.27 to 1.29pg/mL), high reproducibility (intra-day and inter-day relative standard deviations (RSDs) less than 14.8%) and satisfactory accuracy (recoveries ranged from 74.0%-116.6%). Furthermore, endogenous BRs were successfully detected in one flower of Brassica napus L. (22.5-542.7pg/g fresh weight) and other plant tissues (13.7-289.8pg/g fresh weight). PMID:27072523

  17. Contractive De-noising Auto-encoder

    OpenAIRE

    Chen, Fu-qiang; Wu, Yan; Zhao, Guo-dong; Zhang, Jun-Ming; Zhu, Ming; Bai, Jing

    2013-01-01

    Auto-encoder is a special kind of neural network based on reconstruction. De-noising auto-encoder (DAE) is an improved auto-encoder which is robust to the input by corrupting the original data first and then reconstructing the original input by minimizing the reconstruction error function. And contractive auto-encoder (CAE) is another kind of improved auto-encoder to learn robust feature by introducing the Frobenius norm of the Jacobean matrix of the learned feature with respect to the origin...

  18. Molecular mechanisms for protein-encoded inheritance

    Energy Technology Data Exchange (ETDEWEB)

    Wiltzius, Jed J.W.; Landau, Meytal; Nelson, Rebecca; Sawaya, Michael R.; Apostol, Marcin I.; Goldschmidt, Lukasz; Soriaga, Angela B.; Cascio, Duilio; Rajashankar, Kanagalaghatta; Eisenberg, David; (Cornell); (HHMI)

    2009-12-01

    In prion inheritance and transmission, strains are phenotypic variants encoded by protein 'conformations'. However, it is unclear how a protein conformation can be stable enough to endure transmission between cells or organisms. Here we describe new polymorphic crystal structures of segments of prion and other amyloid proteins, which offer two structural mechanisms for the encoding of prion strains. In packing polymorphism, prion strains are encoded by alternative packing arrangements (polymorphs) of {beta}-sheets formed by the same segment of a protein; in segmental polymorphism, prion strains are encoded by distinct {beta}-sheets built from different segments of a protein. Both forms of polymorphism can produce enduring conformations capable of encoding strains. These molecular mechanisms for transfer of protein-encoded information into prion strains share features with the familiar mechanism for transfer of nucleic acid-encoded information into microbial strains, including sequence specificity and recognition by noncovalent bonds.

  19. KOGNAC: Efficient Encoding of Large Knowledge Graphs

    OpenAIRE

    Urbani, Jacopo; Dutta, Sourav; Gurajada, Sairam; Weikum, Gerhard

    2016-01-01

    Many Web applications require efficient querying of large Knowledge Graphs (KGs). We propose KOGNAC, a dictionary-encoding algorithm designed to improve SPARQL querying with a judicious combination of statistical and semantic techniques. In KOGNAC, frequent terms are detected with a frequency approximation algorithm and encoded to maximise compression. Infrequent terms are semantically grouped into ontological classes and encoded to increase data locality. We evaluated KOGNAC in combination w...

  20. Auto-encoders: reconstruction versus compression

    OpenAIRE

    Ollivier, Yann

    2014-01-01

    We discuss the similarities and differences between training an auto-encoder to minimize the reconstruction error, and training the same auto-encoder to compress the data via a generative model. Minimizing a codelength for the data using an auto-encoder is equivalent to minimizing the reconstruction error plus some correcting terms which have an interpretation as either a denoising or contractive property of the decoding function. These terms are related but not identical to those used in den...

  1. Computational Intelligence and Its Encoding Mechanism

    Institute of Scientific and Technical Information of China (English)

    LIUMan-dan

    2004-01-01

    The origin and characteristics of computational intelligence, and several typical computational intelligence algorithms such as genetic algorithm and DNA computing are described, and the influence of evolution strategies and convergence properties on the encoding mechanism is discussed. A novel genetic algorithm based on degressive carry number encoding is then proposed. This algorithm uses degressive carry number encoding in the evolutionary process instead of commonly used fixed carry number. Finally a novel encoding mechanism and a new algorithm are proposed, which combine modem computational intelligence with the traditional Chinese methodology.

  2. Computational Intelligence and Its Encoding Mechanism

    Institute of Scientific and Technical Information of China (English)

    LIU Man-dan

    2004-01-01

    The origin and characteristics of computational intelligence, and several typical computational intelligence algorithms such as genetic algorithm and DNA computing are described, and the influence of evolution strategies and convergence properties on the encoding mechanism is discussed. A novel genetic algorithm based on degressive carry number encoding is then proposed. This algorithm uses degressive carry number encoding in the evolutionary process instead of commonly used fixed carry number. Finally a novel encoding mechanism and a new algorithm are proposed, which combine modern computational intelligence with the traditional Chinese methodology.

  3. Rate-Distortion Auto-Encoders

    OpenAIRE

    Giraldo, Luis G. Sanchez; Principe, Jose C.

    2013-01-01

    A rekindled the interest in auto-encoder algorithms has been spurred by recent work on deep learning. Current efforts have been directed towards effective training of auto-encoder architectures with a large number of coding units. Here, we propose a learning algorithm for auto-encoders based on a rate-distortion objective that minimizes the mutual information between the inputs and the outputs of the auto-encoder subject to a fidelity constraint. The goal is to learn a representation that is ...

  4. Perceptually adapted MPEG video encoding

    Science.gov (United States)

    Bordes, Philippe; Guillotel, Philippe

    2000-06-01

    In picture quality assessment, the amount of distortion perceived by a human observer differs from one region to another according to its particular local content. This subjective perception can be explained/predicted by considering some simple psychovisual properties (masking) of the Human Visual System (HVS). We have implemented a HVS model based on a pyramid decomposition for extracting the spatial frequencies, associated with a multi-resolution motion representation. Then the visibility of the decoded errors is computed by exploiting the Kelly's contrast sensitivity spatio-velocity model. The resulting data is called a 'Quality-map.' Special attention has been paid to temporal/moving effects since, in the case of video sequences, motion strongly influences the subjective quality assessment. The quality of the motion information is thus preponderant. In the second part, two possible uses of these psychovisual properties for improving MPEG video encoding performances are depicted: (1) The pre-processing of the pictures to remove non-visible information using a motion adapted filtering. This process is efficient in term of bits saved and degradation is not significant especially on consumer electronic TV sets. (2) A perceptual quantizer based on a local adaptation scheme in order to obtain Quality-maps as uniform as possible (homogeneous perceived distortion), at constant bit-rate. Further improvements have been considered, especially when the viewer is tracking a moving object in the scene.

  5. DNA encoding a DNA repair protein

    Science.gov (United States)

    Petrini, John H.; Morgan, William Francis; Maser, Richard Scott; Carney, James Patrick

    2006-08-15

    An isolated and purified DNA molecule encoding a DNA repair protein, p95, is provided, as is isolated and purified p95. Also provided are methods of detecting p95 and DNA encoding p95. The invention further provides p95 knock-out mice.

  6. A METHOD OF SHAPE ENCODING AND RETRIEVAL

    Institute of Scientific and Technical Information of China (English)

    Huang Xianglin; Song Lei; Shen Lansun

    2002-01-01

    A method of shape encoding and retrieval is proposed in this letter, which uses centripetal code to encode shape and extracts shape's convex for retrieval. For the rotation invariance and translation invariance of the centripetal code and the normalization of convex,the proposed retrieval method is similarity transform resistant, Experimental results confirm this capability.

  7. The Arabic Diatessaron Project: Digitalizing, Encoding, Lemmatization

    Directory of Open Access Journals (Sweden)

    Giuliano Lancioni

    2016-04-01

    Full Text Available The Arabic Diatessaron Project (henceforth ADP is an international research project in Digital Humanities that aims to collect, digitalise and encode all known manuscripts of the Arabic Diatessaron (henceforth AD, a text that has been relatively neglected in scholarly research. ADP’s final goal is to provide a number of tools that can enable scholars to effectively query, compare and investigate all known variants of the text that will be encoded as far as possible in compliance with the Text Encoding Initiative (TEI guidelines. The paper addresses a number of issues involved in the process of digitalising manuscripts included in the two existing editions (Ciasca 1888 and Marmardji 1935, adding variants in unedited manuscripts, encoding and lemmatising the text. Issues involved in the design of the ADP include presentation of variants, choice of the standard text, applicability of TEI guidelines, automatic translation between different encodings, cross-edition concordances and principles of lemmatisation.

  8. Brassinosteroids and their Biological Activities

    Czech Academy of Sciences Publication Activity Database

    Oklešťková, Jana; Rárová, Lucie; Strnad, Miroslav

    Vol. Part XIII. Heidelberg: Springer Verlag, 2013 - (Ramawat, K.; Mérillon, J.), s. 3851-3871 ISBN 978-3-642-22143-9 R&D Projects: GA AV ČR IAA400550801 Grant ostatní: GA MŠk(CZ) ED0007/01/01 Institutional support: RVO:61389030 Keywords : Anticancer activity * apoptosis * bioassay Subject RIV: EB - Genetics ; Molecular Biology

  9. Source Coding With Encoder Side Information

    OpenAIRE

    Martinian, Emin; Wornell, Gregory W.; Zamir, Ram

    2004-01-01

    We introduce the idea of distortion side information, which does not directly depend on the source but instead affects the distortion measure. We show that such distortion side information is not only useful at the encoder, but that under certain conditions, knowing it at only the encoder is as good as knowing it at both encoder and decoder, and knowing it at only the decoder is useless. Thus distortion side information is a natural complement to the signal side information studied by Wyner a...

  10. Encoding entanglement-assisted quantum stabilizer codes

    International Nuclear Information System (INIS)

    We address the problem of encoding entanglement-assisted (EA) quantum error-correcting codes (QECCs) and of the corresponding complexity. We present an iterative algorithm from which a quantum circuit composed of CNOT, H, and S gates can be derived directly with complexity O(n2) to encode the qubits being sent. Moreover, we derive the number of each gate consumed in our algorithm according to which we can design EA QECCs with low encoding complexity. Another advantage brought by our algorithm is the easiness and efficiency of programming on classical computers. (general)

  11. Deformed versus undeformed cat states encoding qubit

    International Nuclear Information System (INIS)

    We study the possibility of exploiting superpositions of coherent states to encode qubits. A comparison between the use of deformed and undeformed bosonic algebra is made in connection with the amplitude damping errors

  12. Encoding and decoding of femtosecond pulses.

    Science.gov (United States)

    Weiner, A M; Heritage, J P; Salehi, J A

    1988-04-01

    We demonstrate the spreading of femtosecond optical pulses into picosecond-duration pseudonoise bursts. Spreading is accomplished by encoding pseudorandom binary phase codes onto the optical frequency spectrum. Subsequent decoding of the spectral phases restores the original pulse. We propose that frequency-domain encoding and decoding of coherent ultrashort pulses could form the basis for a rapidly reconfigurable, code-division multiple-access optical telecommunications network. PMID:19745879

  13. Unconscious relational encoding depends on hippocampus

    OpenAIRE

    Duss, Simone; Reber, Thomas P.; Hänggi, Jürgen; Schwab, Simon; Wiest, Roland; Müri, René Martin; Brugger, Peter; Gutbrod, Klemens; Henke, Katharina

    2014-01-01

    Textbooks divide between human memory systems based on consciousness. Hippocampus is thought to support only conscious encoding, while neocortex supports both conscious and unconscious encoding. We tested whether processing modes, not consciousness, divide between memory systems in three neuroimaging experiments with 11 amnesic patients (mean age = 45.55 years, standard deviation = 8.74, range = 23-60) and 11 matched healthy control subjects. Examined processing modes were single item versus ...

  14. Encoding attentional states during visuomotor adaptation

    OpenAIRE

    Im, Hee Yeon; Bédard, Patrick; Song, Joo-Hyun

    2015-01-01

    We recently showed that visuomotor adaptation acquired under attentional distraction is better recalled under a similar level of distraction compared to no distraction. This paradoxical effect suggests that attentional state (e.g., divided or undivided) is encoded as an internal context during visuomotor learning and should be reinstated for successful recall (Song & Bédard, 2015). To investigate if there is a critical temporal window for encoding attentional state in visuomotor memory, we ma...

  15. A New SAT Encoding of Earley Parsing

    OpenAIRE

    Neil, Tobias

    2015-01-01

    While the Boolean satisfiability problem (SAT) lies in NP, prodigious work in SAT solvers has allowed for its use in modeling a multitude of practical problems. Stating a problem in SAT can be cumbersome though and so the demand for SAT encodings arises, providing a means to formulate problems or parts of problems in a more intuitive environment. Several algorithms have been proposed in the past to encode context-free grammars as SAT formulae, allowing for the comprehensive construction of ma...

  16. Multi-dimensionally encoded magnetic resonance imaging

    OpenAIRE

    Lin, Fa-Hsuan

    2012-01-01

    Magnetic resonance imaging typically achieves spatial encoding by measuring the projection of a q-dimensional object over q-dimensional spatial bases created by linear spatial encoding magnetic fields (SEMs). Recently, imaging strategies using nonlinear SEMs have demonstrated potential advantages for reconstructing images with higher spatiotemporal resolution and reducing peripheral nerve stimulation. In practice, nonlinear SEMs and linear SEMs can be used jointly to further improve the image...

  17. Genes involved in brassinosteroids's metabolism and signal transduction pathways Genes envolvidos nas vias de biossíntese e de transdução de sinal de brassinoesteróides

    Directory of Open Access Journals (Sweden)

    Adaucto Bellarmino Pereira-Netto

    2007-07-01

    Full Text Available Brassinosteroids (BRs are plant steroids essential for the normal growth and development, which carry an oxygen moiety at C-3 and additional ones at one or more of the C-2, C-6, C-22 and C-23 carbon atoms. In the past few years, application of molecular genetics allowed significant progress on the understanding of the BRs biosynthetic pathway regulation and on the identification of several components of their signal transduction pathway, as well. Search in eletronic databases show dozens of records for brassinosteroid-related genes for the last twelve months, demonstrating the big efforts being carried out in this field. This review highlights the recent advances on the characterization of genes and mutations that are helping to unravel the molecular mechanisms involved in the BRs synthesis/metabolism, perception and response, with especial emphasis on their role in plant cell elongation. Aspects of the involvement of BRs on the regulation of cell cycle-controlling proteins are discussed as well.Brassinoesteróides são esteróides vegetais, essenciais para o crescimento e o desenvolvimento, que apresentam um oxigênio no carbono C-3 e oxigênios adicionais em um ou mais dos átomos de carbono C-2, C-6, C-22 e C-23. Nos últimos anos, a aplicação de técnicas de genética molecular possibilitou progresso significativo no entendimento da regulação da via biossintética e na identificação de vários componentes da via de transdução de sinal de brassinoesteróides. Buscas em bases de dados eletrônicas mostram dúzias de registros para genes relacionados a brassinoesteróides nos últimos doze meses, demonstrando os grandes esforços desenvolvidos neste campo. Esta revisão destaca os recentes avanços na caracterização de genes e mutações que estão auxiliando na elucidação dos mecanismos moleculares envolvidos na síntese/metabolismo, e percepção e resposta de brassinoesteróides, com ênfase especial no seu papel no alongamento

  18. An encyclopedia of mouse DNA elements (Mouse ENCODE)

    OpenAIRE

    Stamatoyannopoulos, John A; Guig?? Serra, Roderic; Djebali, Sarah; Lagarde, Julien; Adams, Leslie B.

    2012-01-01

    To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome.

  19. Multichannel Compressive Sensing MRI Using Noiselet Encoding

    Science.gov (United States)

    Pawar, Kamlesh; Egan, Gary; Zhang, Jingxin

    2015-01-01

    The incoherence between measurement and sparsifying transform matrices and the restricted isometry property (RIP) of measurement matrix are two of the key factors in determining the performance of compressive sensing (CS). In CS-MRI, the randomly under-sampled Fourier matrix is used as the measurement matrix and the wavelet transform is usually used as sparsifying transform matrix. However, the incoherence between the randomly under-sampled Fourier matrix and the wavelet matrix is not optimal, which can deteriorate the performance of CS-MRI. Using the mathematical result that noiselets are maximally incoherent with wavelets, this paper introduces the noiselet unitary bases as the measurement matrix to improve the incoherence and RIP in CS-MRI. Based on an empirical RIP analysis that compares the multichannel noiselet and multichannel Fourier measurement matrices in CS-MRI, we propose a multichannel compressive sensing (MCS) framework to take the advantage of multichannel data acquisition used in MRI scanners. Simulations are presented in the MCS framework to compare the performance of noiselet encoding reconstructions and Fourier encoding reconstructions at different acceleration factors. The comparisons indicate that multichannel noiselet measurement matrix has better RIP than that of its Fourier counterpart, and that noiselet encoded MCS-MRI outperforms Fourier encoded MCS-MRI in preserving image resolution and can achieve higher acceleration factors. To demonstrate the feasibility of the proposed noiselet encoding scheme, a pulse sequences with tailored spatially selective RF excitation pulses was designed and implemented on a 3T scanner to acquire the data in the noiselet domain from a phantom and a human brain. The results indicate that noislet encoding preserves image resolution better than Fouirer encoding. PMID:25965548

  20. Multichannel compressive sensing MRI using noiselet encoding.

    Directory of Open Access Journals (Sweden)

    Kamlesh Pawar

    Full Text Available The incoherence between measurement and sparsifying transform matrices and the restricted isometry property (RIP of measurement matrix are two of the key factors in determining the performance of compressive sensing (CS. In CS-MRI, the randomly under-sampled Fourier matrix is used as the measurement matrix and the wavelet transform is usually used as sparsifying transform matrix. However, the incoherence between the randomly under-sampled Fourier matrix and the wavelet matrix is not optimal, which can deteriorate the performance of CS-MRI. Using the mathematical result that noiselets are maximally incoherent with wavelets, this paper introduces the noiselet unitary bases as the measurement matrix to improve the incoherence and RIP in CS-MRI. Based on an empirical RIP analysis that compares the multichannel noiselet and multichannel Fourier measurement matrices in CS-MRI, we propose a multichannel compressive sensing (MCS framework to take the advantage of multichannel data acquisition used in MRI scanners. Simulations are presented in the MCS framework to compare the performance of noiselet encoding reconstructions and Fourier encoding reconstructions at different acceleration factors. The comparisons indicate that multichannel noiselet measurement matrix has better RIP than that of its Fourier counterpart, and that noiselet encoded MCS-MRI outperforms Fourier encoded MCS-MRI in preserving image resolution and can achieve higher acceleration factors. To demonstrate the feasibility of the proposed noiselet encoding scheme, a pulse sequences with tailored spatially selective RF excitation pulses was designed and implemented on a 3T scanner to acquire the data in the noiselet domain from a phantom and a human brain. The results indicate that noislet encoding preserves image resolution better than Fouirer encoding.

  1. Silencing Brassinosteroid Receptor BRI1 Impairs Herbivory-elicited Accumulation of Jasmonic Acid-isoleucine and Diterpene Glycosides, but not Jasmonic Acid and Trypsin Proteinase Inhibitors in Nicotiana attenuata

    Institute of Scientific and Technical Information of China (English)

    Da-Hai Yang; lan T.Baldwin; Jianqiang Wu

    2013-01-01

    The brassinosteroid (BR) receptor,BR insensitive 1 (BRI1),plays a critical role in plant development,but whether BRI1-mediated BR signaling is involved in plant defense responses to herbivores was largely unknown.Here,we examined the function of BRI1 in the resistance of Nicotiana attenuata (Solanaceae) to its specialist insect herbivore Manduca sexta.Jasmonic acid (JA) and JA-isoleucine conjugate (JA-Ile) are important hormones that mediate resistance to herbivores and we found that after wounding or simulated herbivory NaBRI1 had little effect on JA levels,but was important for the induction of JA-Ile.Further experiments revealed that decreased JAR (the enzyme for JA-Ile production) activity and availability of lie in NaBRI1-silenced plants were likely responsible for the low JA-Ile levels.Consistently,M.sexta larvae gained more weight on NaBRI1-silenced plants than on the control plants.Quantification of insect feeding-induced secondary metabolites revealed that silencing NaBRI1 resulted in decreased levels of carbon-rich defensive secondary metabolites (hydroxygeranyllinalool diterpene glycosides,chlorogenic acid,and rutin),but had little effect on the nitrogen-rich ones (nicotine and trypsin proteinase inhibitors).Thus,NaBRI1-mediated BR signaling is likely involved in plant defense responses to M.sexta,including maintaining JA-Ile levels and the accumulation of several carbon-rich defensive secondary metabolites.

  2. Noise level and MPEG-2 encoder statistics

    Science.gov (United States)

    Lee, Jungwoo

    1997-01-01

    Most software in the movie and broadcasting industries are still in analog film or tape format, which typically contains random noise that originated from film, CCD camera, and tape recording. The performance of the MPEG-2 encoder may be significantly degraded by the noise. It is also affected by the scene type that includes spatial and temporal activity. The statistical property of noise originating from camera and tape player is analyzed and the models for the two types of noise are developed. The relationship between the noise, the scene type, and encoder statistics of a number of MPEG-2 parameters such as motion vector magnitude, prediction error, and quant scale are discussed. This analysis is intended to be a tool for designing robust MPEG encoding algorithms such as preprocessing and rate control.

  3. A Metric Encoding for Bounded Model Checking

    Science.gov (United States)

    Pradella, Matteo; Morzenti, Angelo; San Pietro, Pierluigi

    In Bounded Model Checking, both the system model and the checked property are translated into a Boolean formula to be analyzed by a SAT-solver. We introduce a new encoding technique which is particularly optimized for managing quantitative future and past metric temporal operators, typically found in properties of hard real time systems. The encoding is simple and intuitive in principle, but it is made more complex by the presence, typical of the Bounded Model Checking technique, of backward and forward loops used to represent an ultimately periodic infinite domain by a finite structure. We report and comment on the new encoding technique and on an extensive set of experiments carried out to assess its feasibility and effectiveness.

  4. Template based low data rate speech encoder

    Science.gov (United States)

    Fransen, Lawrence

    1993-09-01

    The 2400-b/s linear predictive coder (LPC) is currently being widely deployed to support tactical voice communication over narrowband channels. However, there is a need for lower-data-rate voice encoders for special applications: improved performance in high bit-error conditions, low-probability-of-intercept (LPI) voice communication, and narrowband integrated voice/data systems. An 800-b/s voice encoding algorithm is presented which is an extension of the 2400-b/s LPC. To construct template tables, speech samples of 420 speakers uttering 8 sentences each were excerpted from the Texas Instrument - Massachusetts Institute of Technology (TIMIT) Acoustic-Phonetic Speech Data Base. Speech intelligibility of the 800-b/s voice encoding algorithm measured by the diagnostic rhyme test (DRT) is 91.5 for three male speakers. This score compares favorably with the 2400-b/s LPC of a few years ago.

  5. Incremental phonological encoding during unscripted sentence production

    Directory of Open Access Journals (Sweden)

    Florian T Jaeger

    2012-11-01

    Full Text Available We investigate phonological encoding during unscripted sentence production, focusing on the effect of phonological overlap on phonological encoding. Previous work on this question has almost exclusively employed isolated word production or highly scripted multiword production. These studies have led to conflicting results: some studies found that phonological overlap between two words facilitates phonological encoding, while others found inhibitory effects. One worry with many of these paradigms is that they involve processes that are not typical to everyday language use, which calls into question to what extent their findings speak to the architectures and mechanisms underlying language production. We present a paradigm to investigate the consequences of phonological overlap between words in a sentence while leaving speakers much of the lexical and structural choices typical in everyday language use. Adult native speakers of English described events in short video clips. We annotated the presence of disfluencies and the speech rate at various points throughout the sentence, as well as the constituent order. We find that phonological overlap has an inhibitory effect on phonological encoding. Specifically, if adjacent content words share their phonological onset (e.g., hand the hammer, they are preceded by production difficulty, as reflected in fluency and speech rate. We also find that this production difficulty affects speakers’ constituent order preferences during grammatical encoding. We discuss our results and previous works to isolate the properties of other paradigms that resulted in facilitatory or inhibitory results. The data from our paradigm also speak to questions about the scope of phonological planning in unscripted speech and as to whether phonological and grammatical encoding interact.

  6. Optical encoder based on a nondiffractive beam

    International Nuclear Information System (INIS)

    Optical encoders are used in industrial and laboratory motion equipment to measure rotations and linear displacements. We introduce a design of an optical encoder based on a nondiffractive beam. We expect that the invariant profile and radial symmetry of the nondiffractive beam provide the design with remarkable tolerance to mechanical perturbations. We experimentally demonstrate that the proposed design generates a suitable output sinusoidal signal with low harmonic distortion. Moreover, we present a numerical model of the system based on the angular spectrum approximation whose predictions are in excellent agreement with the experimental results

  7. Flow imaging with phase velocity encoding

    International Nuclear Information System (INIS)

    The authors studied blood flow quantitation by MR phase velocity encoding (PVE) under steady-flow conditions on in vitro models. Different flow conditions that might cause signal loss were studied: high velocities, velocity gradients, and turbulence. Results showed the failure of the PVE technique in the presence of highly turbulent flows. On the other hand, PVE could measure accurately flows for which radial and circumferential turbulence intensity did not exceed 8 cm/sec when a 1-mm scan resolution is used. The authors concluded that turbulence disturbed the spatial encoding of proton position and therefore induced signal loss

  8. Encoding and Decoding Procedures for Arrangements

    Directory of Open Access Journals (Sweden)

    Alexander A. Babaev

    2012-05-01

    Full Text Available This article discusses an algorithm based on the encoding procedure for representing a set of arrangement elements as a single number. Also the author provides the procedure for the inverse transformation of the code into arrangement elements. In addition the Article includes recommendations on the use of the above procedures in combinatorial algorithms of optimization.

  9. Encoded Archival Description as a Halfway Technology

    Science.gov (United States)

    Dow, Elizabeth H.

    2009-01-01

    In the mid 1990s, Encoded Archival Description (EAD) appeared as a revolutionary technology for publishing archival finding aids on the Web. The author explores whether or not, given the advent of Web 2.0, the archival community should abandon EAD and look for something to replace it. (Contains 18 notes.)

  10. Encoding attentional states during visuomotor adaptation.

    Science.gov (United States)

    Im, Hee Yeon; Bédard, Patrick; Song, Joo-Hyun

    2015-01-01

    We recently showed that visuomotor adaptation acquired under attentional distraction is better recalled under a similar level of distraction compared to no distraction. This paradoxical effect suggests that attentional state (e.g., divided or undivided) is encoded as an internal context during visuomotor learning and should be reinstated for successful recall (Song & Bédard, 2015). To investigate if there is a critical temporal window for encoding attentional state in visuomotor memory, we manipulated whether participants performed the secondary attention-demanding task concurrently in the early or late phase of visuomotor learning. Recall performance was enhanced when the attentional states between recall and the early phase of visuomotor learning were consistent. However, it reverted to untrained levels when tested under the attentional state of the late-phase learning. This suggests that attentional state is primarily encoded during the early phase of learning before motor errors decrease and reach an asymptote. Furthermore, we demonstrate that when divided and undivided attentional states were mixed during visuomotor adaptation, only divided attention was encoded as an internal cue for memory retrieval. Therefore, a single attentional state appears to be primarily integrated with visuomotor memory while motor error reduction is in progress during learning. PMID:26114683

  11. Encoding and Retrieval During Bimanual Rhythmic Coordination

    Science.gov (United States)

    Shockley, Kevin; Turvey, Michael T.

    2005-01-01

    In 2 experiments, bimanual 1:1 rhythmic coordination was performed concurrently with encoding or retrieval of word lists. Effects of divided attention (DA) on coordination were indexed by changes in mean relative phase and recurrence measures of shared activity between the 2 limbs. Effects of DA on memory were indexed by deficits in recall…

  12. An Encoder/Decoder Scheme of OCDMA Based on Waveguide

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    A new encoder/decoder scheme of OCDMA based on waveguide isproposed in this paper. The principle as well as the structure of waveguide encoder/decoder is given. It can be seen that all-optical OCDMA encoder/decoder can be realized by the proposed scheme of the waveguide encoder/decoder. It can also make the OCDMA encoder/decoder integrated easily and the access controlled easily. The system based on this scheme can work under the entirely asynchronous condition.

  13. Temporal information encoding in dynamic memristive devices

    Energy Technology Data Exchange (ETDEWEB)

    Ma, Wen; Chen, Lin; Du, Chao; Lu, Wei D., E-mail: wluee@eecs.umich.edu [Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, Michigan 48109 (United States)

    2015-11-09

    We show temporal and frequency information can be effectively encoded in memristive devices with inherent short-term dynamics. Ag/Ag{sub 2}S/Pd based memristive devices with low programming voltage (∼100 mV) were fabricated and tested. At weak programming conditions, the devices exhibit inherent decay due to spontaneous diffusion of the Ag atoms. When the devices were subjected to pulse train inputs emulating different spiking patterns, the switching probability distribution function diverges from the standard Poisson distribution and evolves according to the input pattern. The experimentally observed switching probability distributions and the associated cumulative probability functions can be well-explained using a model accounting for the short-term decay effects. Such devices offer an intriguing opportunity to directly encode neural signals for neural information storage and analysis.

  14. Asymmetric synthesis using chiral-encoded metal.

    Science.gov (United States)

    Yutthalekha, Thittaya; Wattanakit, Chularat; Lapeyre, Veronique; Nokbin, Somkiat; Warakulwit, Chompunuch; Limtrakul, Jumras; Kuhn, Alexander

    2016-01-01

    The synthesis of chiral compounds is of crucial importance in many areas of society and science, including medicine, biology, chemistry, biotechnology and agriculture. Thus, there is a fundamental interest in developing new approaches for the selective production of enantiomers. Here we report the use of mesoporous metal structures with encoded geometric chiral information for inducing asymmetry in the electrochemical synthesis of mandelic acid as a model molecule. The chiral-encoded mesoporous metal, obtained by the electrochemical reduction of platinum salts in the presence of a liquid crystal phase and the chiral template molecule, perfectly retains the chiral information after removal of the template. Starting from a prochiral compound we demonstrate enantiomeric excess of the (R)-enantiomer when using (R)-imprinted electrodes and vice versa for the (S)-imprinted ones. Moreover, changing the amount of chiral cavities in the material allows tuning the enantioselectivity. PMID:27562028

  15. Multichannel Compressive Sensing MRI Using Noiselet Encoding

    CERN Document Server

    Pawar, Kamlesh; Zhang, Jingxin

    2014-01-01

    The incoherence between measurement and sparsifying transform matrices and the restricted isometry property (RIP) of measurement matrix are two of the key factors in determining the performance of compressive sensing (CS). In CS-MRI, the randomly under-sampled Fourier matrix is used as the measurement matrix and the wavelet transform is usually used as sparsifying transform matrix. However, the incoherence between the randomly under-sampled Fourier matrix and the wavelet matrix is not optimal, which can deteriorate the performance of CS-MRI. Using the mathematical result that noiselets are maximally incoherent with wavelets, this paper introduces the noiselet unitary bases as the measurement matrix to improve the incoherence and RIP in CS-MRI, and presents a method to design the pulse sequence for the noiselet encoding. This novel encoding scheme is combined with the multichannel compressive sensing (MCS) framework to take the advantage of multichannel data acquisition used in MRI scanners. An empirical RIP a...

  16. Robust macroscopic entanglement without complex encodings

    CERN Document Server

    Chaves, Rafael; Acín, Antonio

    2011-01-01

    One of the main challenges for the experimental manipulation and storage of macroscopic entanglement is its fragility under noise. We present a simple recipe for the systematic enhancement of the resistance of multipartite entanglement against any local noise with a privileged direction in the Bloch sphere. For the case of exact local dephasing along any given basis, and for all noise strengths, our prescription grants full robustness: even states whose entanglement decays exponentially with the number of parts are mapped to states whose entanglement is constant. In contrast to previous techniques resorting to complex logical-qubit encodings, such enhancement is attained simply by performing local unitary rotations before the noise acts. The scheme is therefore highly experimentally-friendly, as it brings no overhead of extra physical qubits to encode logical ones. In addition, we show that, apart from entanglement, the resilience of the states as resources for useful practical tasks such as metrology and non...

  17. Phase modulation pseudocolor encoding ghost imaging

    Institute of Scientific and Technical Information of China (English)

    段德洋; 张路; 杜少将; 夏云杰

    2015-01-01

    We present a ghost imaging scheme that can obtain a good pseudocolor image of black-and-white objects. The essential idea is to use the multi-wavelength thermal light source and the phase modulation pseudocolor encoding technique, which overcomes the disadvantages of other methods involved the spatial filtering. Therefore, the pseudocolor ghost image achieved by this imaging scheme is better than that obtained by other methods in brightness, color, and signal-to-noise ratio.

  18. Context Is Routinely Encoded During Emotion Perception

    OpenAIRE

    Barrett, Lisa Feldman; Kensinger, Elizabeth A.

    2010-01-01

    In the present study, we investigated whether context is routinely encoded during emotion perception. For the first time, we show that people remember the context more often when asked to label an emotion in a facial expression than when asked to judge the expression's simple affective significance (which can be done on the basis of the structural features of the face alone). Our findings are consistent with an emerging literature showing that facial muscle actions (i.e., structural features ...

  19. Encoding a logical qubit into physical qubits

    OpenAIRE

    Zeng, B; Zhou, D. L.; Xu, Z.; Sun, C. P.; You, L.

    2004-01-01

    We propose two protocols to encode a logical qubit into physical qubits relying on common types of qubit-qubit interactions in as simple forms as possible. We comment on its experimental implementation in several quantum computing architectures, e.g. with trapped atomic ion qubits, atomic qubits inside a high Q optical cavity, solid state Josephson junction qubits, and Bose-Einstein condensed atoms.

  20. Scoring and Classifying with Gated Auto-encoders

    OpenAIRE

    Im, Daniel Jiwoong; Taylor, Graham W.

    2014-01-01

    Auto-encoders are perhaps the best-known non-probabilistic methods for representation learning. They are conceptually simple and easy to train. Recent theoretical work has shed light on their ability to capture manifold structure, and drawn connections to density modelling. This has motivated researchers to seek ways of auto-encoder scoring, which has furthered their use in classification. Gated auto-encoders (GAEs) are an interesting and flexible extension of auto-encoders which can learn tr...

  1. Scene adaptive video encoding for MPEG and H.263+ video

    OpenAIRE

    Fernando, WAC; Canagarajah, CN

    2001-01-01

    This paper presents a new scene adaptive video encoding scheme for MPEG and H263+ video encoders. The proposed scheme determines the picture types adaptively based on statistical features of each video frame. Results show that the proposed scheme demonstrates a significant improvement in performance compared to existing schemes This paper presents a new scene adaptive video encoding scheme for MPEG and H263+ video encoders. The proposed scheme determines the picture types adaptively based ...

  2. Multiaccess Channel with Partially Cooperating Encoders and Security Constraints

    OpenAIRE

    Awan, Zohaib Hassan; Zaidi, Abdellatif; Vandendorpe, Luc

    2012-01-01

    We study a special case of Willems's two-user multi-access channel with partially cooperating encoders from a security perspective. This model differs from Willems's setup in that only one encoder, Encoder 1, is allowed to conference; Encoder 2 does not transmit any message, and there is an additional passive eavesdropper from whom the communication should be kept secret. For the discrete memoryless (DM) case, we establish inner and outer bounds on the capacity-equivocation region. The inner ...

  3. Encoding the core electrons with graph concepts.

    Science.gov (United States)

    Pogliani, Lionello

    2004-01-01

    The core electron problem of atoms in chemical graph studies has always been considered as a minor problem. Usually, chemical graphs had to encode just a small set of second row atoms, i.e., C, N, O, and F, thus, graph and, in some cases, pseudograph concepts were enough to "graph" encode the molecules at hand. Molecular connectivity theory, together with its side-branch the electrotopological state, introduced two "ad hoc" algorithms for the core electrons of higher-row atoms based, mainly, on quantum concepts alike. Recently, complete graphs, and, especially, odd complete graphs have been introduced to encode the core electrons of higher-row atoms. By the aid of these types of graphs a double-valued algorithm has been proposed for the valence delta, deltav, of any type of atoms of the periodic table with a principal quantum number n > or =2. The new algorithm is centered on an invariant suggested by the hand-shaking theorem, and the values it gives rise to parallel in some way the values derived by the aid of the two old "quantum" algorithms. A thorough comparative analysis of the newly proposed algorithms has been undertaken for atoms of the group 1A-7A of the periodic table. This comparative study includes the electronegativity, the size of the atoms, the first ionization energy, and the electron affinity. The given algorithm has also been tested with sequential complete graphs, while the even complete graphs give rise to conceptual difficulties. QSAR/QSPR studies do not show a clear-cut preference for any of the two values the algorithm gives rise to, even if recent results seem to prefer one of the two values. PMID:14741009

  4. Toward Chemical Implementation of Encoded Combinatorial Libraries

    DEFF Research Database (Denmark)

    Nielsen, John; Janda, Kim D.

    1994-01-01

    The recent application of "combinatorial libraries" to supplement existing drug screening processes might simplify and accelerate the search for new lead compounds or drugs. Recently, a scheme for encoded combinatorial chemistry was put forward to surmount a number of the limitations possessed by...... existing methodologies. Here we detail the synthesis of several matrices and the necessary chemistry to implement the conceptual scheme. In addition, we disclose how this novel technology permits a controlled ′dendritic" display of the chemical libraries. © 1994 Academic Press. All rights reserved....

  5. Error correction for encoded quantum annealing

    Science.gov (United States)

    Pastawski, Fernando; Preskill, John

    2016-05-01

    Recently, W. Lechner, P. Hauke, and P. Zoller [Sci. Adv. 1, e1500838 (2015), 10.1126/sciadv.1500838] have proposed a quantum annealing architecture, in which a classical spin glass with all-to-all pairwise connectivity is simulated by a spin glass with geometrically local interactions. We interpret this architecture as a classical error-correcting code, which is highly robust against weakly correlated bit-flip noise, and we analyze the code's performance using a belief-propagation decoding algorithm. Our observations may also apply to more general encoding schemes and noise models.

  6. Space Qualified High Speed Reed Solomon Encoder

    Science.gov (United States)

    Gambles, Jody W.; Winkert, Tom

    1993-01-01

    This paper reports a Class S CCSDS recommendation Reed Solomon encoder circuit baselined for several NASA programs. The chip is fabricated using United Technologies Microelectronics Center's UTE-R radiation-hardened gate array family, contains 64,000 p-n transistor pairs, and operates at a sustained output data rate of 200 MBits/s. The chip features a pin selectable message interleave depth of from 1 to 8 and supports output block lengths of 33 to 255 bytes. The UTE-R process is reported to produce parts that are radiation hardened to 16 Rads (Si) total dose and 1.0(exp -10) errors/bit-day.

  7. 2D Barcode for DNA Encoding

    Directory of Open Access Journals (Sweden)

    Elena Purcaru

    2011-09-01

    Full Text Available The paper presents a solution for endcoding/decoding DNA information in 2D barcodes. First part focuses on the existing techniques and symbologies in 2D barcodes field. The 2D barcode PDF417 is presented as starting point. The adaptations and optimizations on PDF417 and on DataMatrix lead to the solution – DNA2DBC – DeoxyriboNucleic Acid Two Dimensional Barcode. The second part shows the DNA2DBC encoding/decoding process step by step. In conclusions are enumerated the most important features of 2D barcode implementation for DNA.

  8. 2D Barcode for DNA Encoding

    CERN Document Server

    Purcaru, Elena

    2012-01-01

    The paper presents a solution for endcoding/decoding DNA information in 2D barcodes. First part focuses on the existing techniques and symbologies in 2D barcodes field. The 2D barcode PDF417 is presented as starting point. The adaptations and optimizations on PDF417 and on DataMatrix lead to the solution - DNA2DBC - DeoxyriboNucleic Acid Two Dimensional Barcode. The second part shows the DNA2DBC encoding/decoding process step by step. In conclusions are enumerated the most important features of 2D barcode implementation for DNA.

  9. 2D Barcode for DNA Encoding

    OpenAIRE

    Elena Purcaru; Cristian Toma

    2012-01-01

    The paper presents a solution for endcoding/decoding DNA information in 2D barcodes. First part focuses on the existing techniques and symbologies in 2D barcodes field. The 2D barcode PDF417 is presented as starting point. The adaptations and optimizations on PDF417 and on DataMatrix lead to the solution – DNA2DBC – DeoxyriboNucleic Acid Two Dimensional Barcode. The second part shows the DNA2DBC encoding/decoding process step by step. In conclusions are enumerated the most important features ...

  10. Wavelet encoding and variable resolution progressive transmission

    Science.gov (United States)

    Blanford, Ronald P.

    1993-01-01

    Progressive transmission is a method of transmitting and displaying imagery in stages of successively improving quality. The subsampled lowpass image representations generated by a wavelet transformation suit this purpose well, but for best results the order of presentation is critical. Candidate data for transmission are best selected using dynamic prioritization criteria generated from image contents and viewer guidance. We show that wavelets are not only suitable but superior when used to encode data for progressive transmission at non-uniform resolutions. This application does not preclude additional compression using quantization of highpass coefficients, which to the contrary results in superior image approximations at low data rates.

  11. Spatially encoded multiple-quantum excitation

    Science.gov (United States)

    Ridge, Clark D.; Borvayeh, Leila; Walls, Jamie D.

    2013-05-01

    In this work, we present a simple method to spatially encode the transition frequencies of nuclear spin transitions and to read out these frequencies within a single scan. The experiment works by combining pulsed field gradients with an excitation sequence that selectively excites spin transitions within certain sample regions. After the initial excitation, imaging the resulting widehat{z}-magnetization is used to determine the locations where the excitations occurred, from which the corresponding transition frequencies are determined. Simple experimental demonstrations of this technique on one- and two-spin systems are presented.

  12. Aging, encoding quality and false memories

    OpenAIRE

    Dehon, Hedwige; Brédart, Serge

    2005-01-01

    The current experiment explored the effect of enhancing the quality of encoding on the creation of false memories in older participants. Three groups of participants (1 group of younger adults and two groups of older adults) were presented with a modified version (Brédart, 2000) of the DRM paradigm (Roediger & McDermott, 1995) which permitted to elicit false recall. We used a short interstimuli interval (ISI of 1.5 sec) in the younger and the older control group. A slower rate of presentation...

  13. DVB-S2 FEC Encoder: Implementation of DVB-S2 FEC encoder in FPGA

    OpenAIRE

    Myhr, Reidar

    2007-01-01

    This Master Thesis describe how DVB-S2 Forward Error Correction (FEC) encoding can be implemented in hardware like a FPGA. It include the design, simulation, verification and synthesis of a complete encoder for the DVB-S2 FEC system. First the Thesis gives a introduction to the history behind DVB-S2 and the FEC system. It describe shortly the theory behind the error correcting codes used in the FEC, BCH and LDPC codes. To get an effective implementation in hardware it was necessary to studies...

  14. Reading Neural Encodings using Phase Space Methods

    CERN Document Server

    Abarbanel, Henry D I; Abarbanel, Henry D I; Tumer, Evren C.

    2003-01-01

    Environmental signals sensed by nervous systems are often represented in spike trains carried from sensory neurons to higher neural functions where decisions and functional actions occur. Information about the environmental stimulus is contained (encoded) in the train of spikes. We show how to "read" the encoding using state space methods of nonlinear dynamics. We create a mapping from spike signals which are output from the neural processing system back to an estimate of the analog input signal. This mapping is realized locally in a reconstructed state space embodying both the dynamics of the source of the sensory signal and the dynamics of the neural circuit doing the processing. We explore this idea using a Hodgkin-Huxley conductance based neuron model and input from a low dimensional dynamical system, the Lorenz system. We show that one may accurately learn the dynamical input/output connection and estimate with high precision the details of the input signals from spike timing output alone. This form of "...

  15. Linear encoder based low frequency inertial sensor

    Directory of Open Access Journals (Sweden)

    Collette Christophe

    2015-01-01

    Full Text Available For many applications, there is an increasing demand for low cost, high-resolution inertial sensors, which are capable of operating in harsh environments. Recently, a prototype of small optical inertial sensor has been built, using a Michelson interferometer. A resolution of 3 pm/√Hz has been obtained above 4 Hz using only low cost components. Compared to most state-of-the-art devices, this prototype did not contain any coil, which offers several important advantages, including a low thermal noise in the suspension and a full compatibility with magnetic environments (like particle collider. On the other hand, the Michelson is known to be tricky to tune, especially when one attempts to miniaturize the sensor. In this paper, we will propose a novel concept of inertial sensor, based on a linear encoder. Compared to the Michelson, the encoder is much more easy to mount, and the calibration more stable. The price to pay is a reduced resolution. In order to overcome this limitation, we amplify mechanically the relative motion between the support and the inertial mass. First results obtained with the new sensor will be discussed, and compared with the Michelson inertial sensor.

  16. V123 Beam Synchronous Encoder Module

    International Nuclear Information System (INIS)

    The V123 Synchronous Encoder Module transmits events to distributed trigger modules and embedded decoders around the RHIC rings where they are used to provide beam instrumentation triggers [1,2,3]. The RHIC beam synchronous event link hardware is mainly comprised of three VMEbus board designs, the central input modules (V201), and encoder modules (V123), and the distributed trigger modules (V124). Two beam synchronous links, one for each ring, are distributed via fiberoptic and fanned out via twisted wire pair cables. The V123 synchronizes with the RF system clock derived from the beam bucket frequency and a revolution fiducial pulse. The RF system clock is used to create the beam synchronous event link carrier and events are synchronized with the rotation fiducial. A low jitter RF clock is later recovered from this carrier by phase lock loops in the trigger modules. Prioritized hardware and software triggers fill up to 15 beam event code transmission slots per revolution while tracking the ramping RF acceleration frequency and storage frequency. The revolution fiducial event is always the first event transmitted which is used to synchronize the firing of the abort kicker and to locate the first bucket for decoders distributed about the ring

  17. Spectrally encoded confocal scanning laser ophthalmoscope

    Science.gov (United States)

    Tao, Yuankai K.; Izatt, Joseph A.

    2010-02-01

    Fundus imaging has become an essential clinical diagnostic tool in ophthalmology. Current generation scanning laser ophthalmoscopes (SLO) offer advantages over conventional fundus photography and indirect ophthalmoscopy in terms of light efficiency and contrast. As a result of the ability of SLO to provide rapid, continuous imaging of retinal structures and its versatility in accommodating a variety of illumination wavelengths, allowing for imaging of both endogenous and exogenous fluorescent contrast agents, SLO has become a powerful tool for the characterization of retinal pathologies. However, common implementations of SLO, such as the confocal scanning laser ophthalmoscope (CSLO) and line-scanning laser ophthalmoscope (LSLO), require imaging or multidimensional scanning elements which are typically implemented in bulk optics placed close to the subject eye. Here, we apply a spectral encoding technique in one dimension combined with single-axis lateral scanning to create a spectrally encoded confocal scanning laser ophthalmoscope (SECSLO) which is fully confocal. This novel implementation of the SLO allows for high contrast, high resolution in vivo human retinal imaging with image transmission through a single-mode optical fiber. Furthermore, the scanning optics are similar and the detection engine is identical to that of current-generation spectral domain optical coherence tomography (SDOCT) systems, potentially allowing for a simplistic implementation of a joint SECSLO-SDOCT imaging system.

  18. Multiple-encoding retrieval for optical security

    Science.gov (United States)

    Barrera, John Fredy; Henao, Rodrigo; Tebaldi, Myrian; Torroba, Roberto; Bolognini, Néstor

    2007-08-01

    We propose a method for image encryption by multiple-step random phase encoding with an undercover multiplexing operation. The true image is stored in a multiple record we call encodegram; and then we can reconstruct it by the use of the appropriate random phase masks and a retrieval protocol. To increase the security of the true hidden image and confuse unauthorized receivers, we add to the encodegram an encoded fake image with different content. This fake image has only a small effect on the retrieval of the true hidden image, owing to the specific property of this protocol. In the decryption step, we can reveal the true image by applying the inverse protocol to two cyphertexts, one the encodegram containing the true image along with the fake image; and the other helping to get the random phase key to achieve the true image. Computer simulations verify the validity of this method for image encryption. Digital implementation of the method makes it particularly suitable for the remote transmission of information.

  19. On the detection of differentially encoded polyphase signals.

    Science.gov (United States)

    Lindsey, W. C.; Simon, M. K.

    1972-01-01

    Consideration of the transmission and detection of differentially encoded multiple phase-shift-keyed (MPSK) signals, paying particular attention to the ambiguity resolution problem resulting from suppression of the transmitted carrier. A study is made of the coherent detection of differentially encoded MPSK signals, and the performance of a differentially encoded MPSK system is compared with that of a system which transmits absolutely encoded polyphase signals and performs perfect ambiguity resolution. Both the perfect and noisy reference signal cases are treated. Also, the performance of coherent detection of differentially encoded MPSK signals is compared with that of differentially coherent reception of the same signal set.

  20. Non-Fourier-encoded parallel MRI using multiple receiver coils.

    Science.gov (United States)

    Mitsouras, Dimitris; Hoge, W Scott; Rybicki, Frank J; Kyriakos, Walid E; Edelman, Alan; Zientara, Gary P

    2004-08-01

    This paper describes a general theoretical framework that combines non-Fourier (NF) spatially-encoded MRI with multichannel acquisition parallel MRI. The two spatial-encoding mechanisms are physically and analytically separable, which allows NF encoding to be expressed as complementary to the inherent encoding imposed by RF receiver coil sensitivities. Consequently, the number of NF spatial-encoding steps necessary to fully encode an FOV is reduced. Furthermore, by casting the FOV reduction of parallel imaging techniques as a dimensionality reduction of the k-space that is NF-encoded, one can obtain a speed-up of each digital NF spatial excitation in addition to accelerated imaging. Images acquired at speed-up factors of 2x to 8x with a four-element RF receiver coil array demonstrate the utility of this framework and the efficiency afforded by it. PMID:15282814

  1. Encoding and decoding time in neural development.

    Science.gov (United States)

    Toma, Kenichi; Wang, Tien-Cheng; Hanashima, Carina

    2016-01-01

    The development of a multicellular organism involves time-dependent changes in molecular and cellular states; therefore 'time' is an indispensable mathematical parameter of ontogenesis. Regardless of their inextricable relationship, there is a limited number of events for which the output of developmental phenomena primarily uses temporal cues that are generated through multilevel interactions between molecules, cells, and tissues. In this review, we focus on neural stem cells, which serve as a faithful decoder of temporal cues to transmit biological information and generate specific output in the developing nervous system. We further explore the identity of the temporal information that is encoded in neural development, and how this information is decoded into various cellular fate decisions. PMID:26748623

  2. Photoelectrical encoder employing an optical grating

    Energy Technology Data Exchange (ETDEWEB)

    Kabaya, Y.

    1985-02-12

    A photoelectrical encoder is disclosed wherein a physical quantity is detected from brightness obtained by moving a first and a second scale. Each scale is provided thereon with an optical grating relative to each other. The grating in one of the scales is constructed such that a first signal lead-out material layer made of a light shielding conductive material, a PN semiconductor layer for converting light into electricity, and a second signal lead-out material layer made of a light transmitting conductive material are laminated on a light transmitting base member to form a narrow belt-shaped light receiving portion and a plurality of narrow belt-shaped light receiving portions arranged at regular pitches. Against the light from the light transmitting base member, the light receiving portions function as light shielding slits, and intervals between the light receiving portions are formed into light transmitting slits.

  3. Radiofrequency encoded angular-resolved light scattering

    DEFF Research Database (Denmark)

    Buckley, Brandon W.; Akbari, Najva; Diebold, Eric D.;

    2015-01-01

    The sensitive, specific, and label-free classification of microscopic cells and organisms is one of the outstanding problems in biology. Today, instruments such as the flow cytometer use a combination of light scatter measurements at two distinct angles to infer the size and internal complexity...... of cells at rates of more than 10,000 per second. However, by examining the entire angular light scattering spectrum it is possible to classify cells with higher resolution and specificity. Current approaches to performing these angular spectrum measurements all have significant throughput limitations...... Encoded Angular-resolved Light Scattering (REALS), this technique multiplexes angular light scattering in the radiofrequency domain, such that a single photodetector captures the entire scattering spectrum from a particle over approximately 100 discrete incident angles on a single shot basis. As a proof...

  4. MPEG-1 low-cost encoder solution

    Science.gov (United States)

    Grueger, Klaus; Schirrmeister, Frank; Filor, Lutz; von Reventlow, Christian; Schneider, Ulrich; Mueller, Gerriet; Sefzik, Nicolai; Fiedrich, Sven

    1995-02-01

    A solution for real-time compression of digital YCRCB video data to an MPEG-1 video data stream has been developed. As an additional option, motion JPEG and video telephone streams (H.261) can be generated. For MPEG-1, up to two bidirectional predicted images are supported. The required computational power for motion estimation and DCT/IDCT, memory size and memory bandwidth have been the main challenges. The design uses fast-page-mode memory accesses and requires only one single 80 ns EDO-DRAM with 256 X 16 organization for video encoding. This can be achieved only by using adequate access and coding strategies. The architecture consists of an input processing and filter unit, a memory interface, a motion estimation unit, a motion compensation unit, a DCT unit, a quantization control, a VLC unit and a bus interface. For using the available memory bandwidth by the processing tasks, a fixed schedule for memory accesses has been applied, that can be interrupted for asynchronous events. The motion estimation unit implements a highly sophisticated hierarchical search strategy based on block matching. The DCT unit uses a separated fast-DCT flowgraph realized by a switchable hardware unit for both DCT and IDCT operation. By appropriate multiplexing, only one multiplier is required for: DCT, quantization, inverse quantization, and IDCT. The VLC unit generates the video-stream up to the video sequence layer and is directly coupled with an intelligent bus-interface. Thus, the assembly of video, audio and system data can easily be performed by the host computer. Having a relatively low complexity and only small requirements for DRAM circuits, the developed solution can be applied to low-cost encoding products for consumer electronics.

  5. THE RELATIONSHIP BETWEEN ENCODING ABILITY AND AGGRESSIVE BEHAVIOR

    OpenAIRE

    Tsamis, Vasiliki J.; Rebok, George W.; Montague, David R.

    2009-01-01

    While past research efforts have reported a relationship between encoding ability and aggressive behavior in children, the relationship between encoding ability and adult aggressiveness has not been examined. Encoding, an element of attention, refers to the ability to recall and reorder information stored in memory. Using selected cognitive tests and a self-report measure of aggressive behavior in a sample of community college students (n=55), this study investigated the relationship between ...

  6. Creation of a Deep Convolutional Auto-Encoder in Caffe

    OpenAIRE

    Turchenko, Volodymyr; Luczak, Artur

    2015-01-01

    The development of a deep (stacked) convolutional auto-encoder in the Caffe deep learning framework is presented in this paper. We describe simple principles which we used to create this model in Caffe. The proposed model of convolutional auto-encoder does not have pooling/unpooling layers yet. The results of our experimental research show comparable accuracy of dimensionality reduction in comparison with a classic auto-encoder on the example of MNIST dataset.

  7. Neutron-encoded mass signatures for multiplexed proteome quantification.

    Science.gov (United States)

    Hebert, Alexander S; Merrill, Anna E; Bailey, Derek J; Still, Amelia J; Westphall, Michael S; Strieter, Eric R; Pagliarini, David J; Coon, Joshua J

    2013-04-01

    We describe a protein quantification method called neutron encoding that exploits the subtle mass differences caused by nuclear binding energy variation in stable isotopes. These mass differences are synthetically encoded into amino acids and incorporated into yeast and mouse proteins via metabolic labeling. Mass spectrometry analysis with high mass resolution (>200,000) reveals the isotopologue-embedded peptide signals, permitting quantification. Neutron encoding will enable highly multiplexed proteome analysis with excellent dynamic range and accuracy. PMID:23435260

  8. Electroencephalographic Brain Dynamics of Memory Encoding in Emotionally Arousing Context

    OpenAIRE

    Uribe, Carlos Enrique; Garcia, Ana; Tomaz, Carlos

    2011-01-01

    Emotional content/context enhances declarative memory through modulation of encoding and retrieval mechanisms. At encoding, neurophysiological data have consistently demonstrated the subsequent memory effect in theta and gamma oscillations. Yet, the existing studies were focused on the emotional content effect and let the emotional context effect unexplored. We hypothesized that theta and gamma oscillations show higher evoked/induced activity during the encoding of visual stimuli when deliver...

  9. Method for high-speed Manchester encoded optical signal generation

    DEFF Research Database (Denmark)

    Zhang, Jianfeng; Chi, Nan; Holm-Nielsen, Pablo Villanueva;

    2004-01-01

    A method for high-speed Manchester encoded optical signal generation is proposed and demonstrated with a specially configured electro-optical modulator. A 10 Gb/s Manchester encoded optical signal was generated, and its bit-error-ratio (BER) performance was evaluated.......A method for high-speed Manchester encoded optical signal generation is proposed and demonstrated with a specially configured electro-optical modulator. A 10 Gb/s Manchester encoded optical signal was generated, and its bit-error-ratio (BER) performance was evaluated....

  10. Terahertz encoding approach for secured chipless radio frequency identification.

    Science.gov (United States)

    Bernier, Maxime; Garet, Frederic; Perret, Etienne; Duvillaret, Lionel; Tedjini, Smail

    2011-08-10

    In this article, we present a new family of chipless tags, which permit encoding of digital data in the terahertz domain. These devices consist of stacked dielectric media whose thicknesses are of the same order as terahertz wavelengths. Since the information is encoded in the volume of these multilayer terahertz tags, they can easily be associated with classical identification techniques (e.g., barcode, radio frequency identification), where information is encoded at the surface of the tag, to provide higher data security. The principle of this encoding approach is studied and experimentally demonstrated in this paper. A 2 bit tag prototype has been realized and measured for validation purposes. PMID:21833143

  11. Oligonucleotide and Long Polymeric DNA Encoding

    Energy Technology Data Exchange (ETDEWEB)

    Miller, E; Mariella Jr., R P; Christian, A T; Gardner, S N; Williams, J M

    2003-11-24

    This report summarizes the work done at Lawrence Livermore National Laboratory for the Oligonucleotide and Long Polymeric DNA Encoding project, part of the Microelectronic Bioprocesses Program at DARPA. The goal of the project was to develop a process by which long (circa 10,000 base-pair) synthetic DNA molecules could be synthesized in a timely and economic manner. During construction of the long molecule, errors in DNA sequence occur during hybridization and/or the subsequent enzymatic process. The work done on this project has resulted in a novel synthesis scheme that we call the parallel pyramid synthesis protocol, the development of a suit of computational tools to minimize and quantify errors in the synthesized DNA sequence, and experimental proof of this technique. The modeling consists of three interrelated modules: the bioinformatics code which determines the specifics of parallel pyramid synthesis for a given chain of long DNA, the thermodynamics code which tracks the products of DNA hybridization and polymerase extension during the later steps in the process, and the kinetics model which examines the temporal and spatial processes during one thermocycle. Most importantly, we conducted the first successful syntheses of a gene using small starting oligomers (tetramers). The synthesized sequence, 813 base pairs long, contained a 725 base pair gene, modified green fluorescent protein (mGFP), which has been shown to be a functional gene by cloning into cells and observing its green fluorescent product.

  12. Encoding network states by striatal cell assemblies.

    Science.gov (United States)

    Carrillo-Reid, Luis; Tecuapetla, Fatuel; Tapia, Dagoberto; Hernández-Cruz, Arturo; Galarraga, Elvira; Drucker-Colin, René; Bargas, José

    2008-03-01

    Correlated activity in cortico-basal ganglia circuits plays a key role in the encoding of movement, associative learning and procedural memory. How correlated activity is assembled by striatal microcircuits is not understood. Calcium imaging of striatal neuronal populations, with single-cell resolution, reveals sporadic and asynchronous activity under control conditions. However, N-methyl-d-aspartate (NMDA) application induces bistability and correlated activity in striatal neurons. Widespread neurons within the field of observation present burst firing. Sets of neurons exhibit episodes of recurrent and synchronized bursting. Dimensionality reduction of network dynamics reveals functional states defined by cell assemblies that alternate their activity and display spatiotemporal pattern generation. Recurrent synchronous activity travels from one cell assembly to the other often returning to the original assembly; suggesting a robust structure. An initial search into the factors that sustain correlated activity of neuronal assemblies showed a critical dependence on both intrinsic and synaptic mechanisms: blockage of fast glutamatergic transmission annihilates all correlated firing, whereas blockage of GABAergic transmission locked the network into a single dominant state that eliminates assembly diversity. Reduction of L-type Ca(2+)-current restrains synchronization. Each cell assembly comprised different cells, but a small set of neurons was shared by different assemblies. A great proportion of the shared neurons was local interneurons with pacemaking properties. The network dynamics set into action by NMDA in the striatal network may reveal important properties of striatal microcircuits under normal and pathological conditions. PMID:18184883

  13. Encoding voice fundamental frequency into vibrotactile frequency.

    Science.gov (United States)

    Rothenberg, M; Molitor, R D

    1979-10-01

    Measured in this study was the ability of eight hearing and five deaf subjects to identify the stress pattern in a short sentence from the variation in voice fundamental frequency (F0), when presented aurally (for hearing subjects) and when transformed into vibrotactile pulse frequency. Various transformations from F0 to pulse frequency were tested in an attempt to determine an optimum transformation, the amount of F0 information that could be transmitted, and what the limitations in the tactile channel might be. The results indicated that a one- or two-octave reduction of F0 vibrotactile frequency (transmitting every second or third glottal pulse) might result in a significant ability to discriminate the intonation patterns associated with moderate-to-strong patterns of sentence stress in English. However, accurate reception of the details of the intonation pattern may require a slower than normal pronounciation because of an apparent temporal indeterminacy of about 200 ms in the perception of variations in vibrotactile frequency. A performance deficit noted for the two prelingually, profoundly deaf subjects with marginally discriminable encodings offers some support for our previous hypothesis that there is a natural association between auditory pitch and perceived vibrotactile frequency. PMID:159917

  14. Comparative genomics of Shiga toxin encoding bacteriophages

    Directory of Open Access Journals (Sweden)

    Smith Darren L

    2012-07-01

    Full Text Available Abstract Background Stx bacteriophages are responsible for driving the dissemination of Stx toxin genes (stx across their bacterial host range. Lysogens carrying Stx phages can cause severe, life-threatening disease and Stx toxin is an integral virulence factor. The Stx-bacteriophage vB_EcoP-24B, commonly referred to as Ф24B, is capable of multiply infecting a single bacterial host cell at a high frequency, with secondary infection increasing the rate at which subsequent bacteriophage infections can occur. This is biologically unusual, therefore determining the genomic content and context of Ф24B compared to other lambdoid Stx phages is important to understanding the factors controlling this phenomenon and determining whether they occur in other Stx phages. Results The genome of the Stx2 encoding phage, Ф24B was sequenced and annotated. The genomic organisation and general features are similar to other sequenced Stx bacteriophages induced from Enterohaemorrhagic Escherichia coli (EHEC, however Ф24B possesses significant regions of heterogeneity, with implications for phage biology and behaviour. The Ф24B genome was compared to other sequenced Stx phages and the archetypal lambdoid phage, lambda, using the Circos genome comparison tool and a PCR-based multi-loci comparison system. Conclusions The data support the hypothesis that Stx phages are mosaic, and recombination events between the host, phages and their remnants within the same infected bacterial cell will continue to drive the evolution of Stx phage variants and the subsequent dissemination of shigatoxigenic potential.

  15. Neural encoding and retrieval of sound sequences.

    Science.gov (United States)

    Rauschecker, Josef P

    2005-12-01

    Although considerable progress has been made recently in our understanding of the coding of complex sounds in the cerebral cortex, the processing and storage of tone sequences is still poorly understood. We have used functional magnetic resonance imaging to identify brain mechanisms involved in the encoding and retrieval of melodies by studying the anticipation of familiar music. The results suggest a specific role for each of the following brain structures: the anterior part of the right superior temporal cortex, the right inferior frontal cortex and anterior insula, the left anterior prefrontal cortex, the lateral cerebellum, and the anterior cingulate. In a separate study, we investigated single-neuron responses in the auditory cortex of awake behaving monkeys to alternating tone sequences that in humans evoke the perception of "streaming." Depending on the frequency separation between the tones, an initial single stream may segregate into two streams after a build-up period of several seconds. The neural responses in the monkeys' primary auditory cortex (A1) mirror the psychophysical time course extremely well, suggesting that habituation within A1 may be one reason for stream segregation. However, the higher auditory and prefrontal areas found to be activated by musical melodies are expected to interact with primary areas in both bottom-up and top-down fashion to bring about the perceptual organization of sound sequences. PMID:16597759

  16. Olfactory bulb encoding during learning under anaesthesia

    Directory of Open Access Journals (Sweden)

    Alister U Nicol

    2014-06-01

    Full Text Available Neural plasticity changes within the olfactory bulb are important for olfactory learning, although how neural encoding changes support new associations with specific odours and whether they can be investigated under anaesthesia, remain unclear. Using the social transmission of food preference olfactory learning paradigm in mice in conjunction with in vivo microdialysis sampling we have shown firstly that a learned preference for a scented food odour smelled on the breath of a demonstrator animal occurs under isofluorane anaesthesia. Furthermore, subsequent exposure to this cued odour under anaesthesia promotes the same pattern of increased release of glutamate and GABA in the olfactory bulb as previously found in conscious animals following olfactory learning, and evoked GABA release was positively correlated with the amount of scented food eaten. In a second experiment, multiarray (24 electrodes electrophysiological recordings were made from olfactory bulb mitral cells under isofluorane anaesthesia before, during and after a novel scented food odour was paired with carbon disulfide. Results showed significant increases in overall firing frequency to the cued-odour during and after learning and decreases in response to an uncued odour. Analysis of patterns of changes in individual neurons revealed that a substantial proportion (>50% of them significantly changed their response profiles during and after learning with most of those previously inhibited becoming excited. A large number of cells exhibiting no response to the odours prior to learning were either excited or inhibited afterwards. With the uncued odour many previously responsive cells became unresponsive or inhibited. Learning associated changes only occurred in the posterior part of the olfactory bulb. Thus olfactory learning under anaesthesia promotes extensive, but spatially distinct, changes in mitral cell networks to both cued and uncued odours as well as in evoked glutamate and

  17. What physics is encoded in Maxwell's equations?

    Science.gov (United States)

    Kosyakov, B. P.

    2005-08-01

    We reconstruct Maxwell's equations showing that a major part of the information encoded in them is taken from topological properties of spacetime, and the residual information, divorced from geometry, which represents the physical contents of electrodynamics, %these equations, translates into four assumptions:(i) locality; (ii) linearity; %of the dynamical law; (iii) identity of the charge-source and the charge-coupling; and (iv) lack of magnetic monopoles. However, a closer inspection of symmetries peculiar to electrodynamics shows that these assumptions may have much to do with geometry. Maxwell's equations tell us that we live in a three-dimensional space with trivial (Euclidean) topology; time is a one-dimensional unidirectional and noncompact continuum; and spacetime is endowed with a light cone structure readable in the conformal invariance of electrodynamics. Our geometric feelings relate to the fact that Maxwell's equations are built in our brain, hence our space and time orientation, our visualization and imagination capabilities are ensured by perpetual instinctive processes of solving Maxwell's equations. People are usually agree in their observations of angle relations, for example, a right angle is never confused with an angle slightly different from right. By contrast, we may disagree in metric issues, say, a colour-blind person finds the light wave lengths quite different from those found by a man with normal vision. This lends support to the view that conformal invariance of Maxwell's equations is responsible for producing our notion of space. Assuming that our geometric intuition is guided by our innate realization of electrodynamical laws, some abnormal mental phenomena, such as clairvoyance, may have a rational explanation.

  18. Encoding Cortical Dynamics in Sparse Features

    Directory of Open Access Journals (Sweden)

    Sheraz eKhan

    2014-05-01

    Full Text Available Distributed cortical solutions of magnetoencephalography (MEG and electroencephalography (EEG exhibit complex spatial and temporal dynamics. The extraction of patterns of interest and dynamic features from these cortical signals has so far relied on the expertise of investigators. There is a definite need in both clinical and neuroscience research for a method that will extract critical features from high-dimensional neuroimaging data in an automatic fashion. We have previously demonstrated the use of optical flow techniques for evaluating the kinematic properties of motion field projected on non-flat manifolds like in a cortical surface. We have further extended this framework to automatically detect features in the optical flow vector field by using the modified and extended 2-Riemannian Helmholtz Hodge Decomposition (HHD. Here, we applied these mathematical models on simulation and MEG data recorded from a healthy individual during a somatosensory experiment and an epilepsy pediatric patient during sleep. We tested whether our technique can automatically extract salient dynamical features of cortical activity. Simulation results indicated that we can precisely reproduce the simulated cortical dynamics with HHD; encode them in sparse features and represent the propagation of brain activity between distinct cortical areas. Using HHD, we decoded the somatosensory N20 component into two HHD features and represented the dynamics of brain activity as a traveling source between two primary somatosensory regions. In the epilepsy patient, we displayed the propagation of the epileptiform activity around the margins of a brain lesion. Our findings indicate that HHD measures computed from cortical dynamics can: (i quantitatively access the cortical dynamics in both healthy and disease brain in terms of sparse features and dynamic brain activity propagation between distinct cortical areas, and (ii facilitate a reproducible, automated analysis of MEG

  19. Stereoscopic radiographic images with gamma source encoding

    International Nuclear Information System (INIS)

    Conventional radiography with X-ray tube has several drawbacks, as the compromise between the size of the focal spot and the fluence. The finite dimensions of the focal spot impose a limit to the spatial resolution. Gamma radiography uses gamma-ray sources which surpass in size, portability and simplicity to X-ray tubes. However, its low intrinsic fluence forces to use extended sources that also degrade the spatial resolution. In this work, we show the principles of a new radiographic technique that overcomes the limitations associated with the finite dimensions of X-ray sources, and that offers additional benefits to conventional techniques. The new technique called coding source imaging (CSI), is based on the use of extended sources, edge-encoding of radiation and differential detection. The mathematical principles and the method of images reconstruction with the new proposed technique are explained in the present work. Analytical calculations were made to determine the maximum spatial resolution and the variables on which it depends. The CSI technique was tested by means of Monte Carlo simulations with sets of spherical objects. We show that CSI has stereoscopic capabilities and it can resolve objects smaller than the source size. The CSI decoding algorithm reconstructs simultaneously four different projections from the same object, while conventional radiography produces only one projection per acquisition. Projections are located in separate image fields on the detector plane. Our results show it is possible to apply an extremely simple radiographic technique with extended sources, and get 3D information of the attenuation coefficient distribution for simple geometry objects in a single acquisition. The results are promising enough to evaluate the possibility of future research with more complex objects typical of medical diagnostic radiography and industrial gamma radiography (author)

  20. Effects of exogenous brassinosteroid on Cd tolerance in Solanum nigrum seedlings%油菜素内酯对龙葵幼苗Cd毒害耐受性的影响

    Institute of Scientific and Technical Information of China (English)

    赵宇; 梁志英; 杨艳君

    2013-01-01

    Cadmium (Cd) is one of the most toxic heavy metals with a strong inhibitory effect on plant growth.Although the effects of auxin on Cd tolerance and accumulation has been reported,the role of brassinosteroid (BR) on Cd stress response has remained unclear.In this study,the physiological effects of BR on Cd stress in Solanum nigrum seedlings were investigated.Cd toxicity induced oxidative damage and decreased the activities of SOD,CAT,and APX in S.nigrum seedlings.Treatment with epibrassinolide (eBL,a synthetic BR) increased Cd sensitivity in S.nigrum seedlings.On the contrary,supplementation with brassinazole (Brz,a specific inhibitor of BR biosynthesis) increased anti-oxidative enzyme activities and reduced reactive oxygen species (ROS)accumulation and oxidative damage.This improved Cd tolerance in S.nigrum seedlings exposed to Cd stress.After treatment with Brz,plant height and root length increased by 29% and 28%,respectively.Also MDA level and Evans blue staining decreased by 37% and 20%,respectively compared with Cd treatment alone.This suggested that BR increased Cd-induced oxidative damage and growth inhibition in S.nigrum seedlings.The results suggested that enhanced Cd sensitivity by BR was correlated with decreasing activities of anti-oxidative capacity in S.nigrum seedling.These results suggested that manipulation of BR level was an effective approach to improve Cd tolerance in plants.It modulated anti-oxidative enzyme activity and ROS accumulation,and provided detailed insights into novel phytoremediation strategies.%以重金属超富集植物龙葵为试验材料,分析了油菜素内酯(BR)对幼苗镉(Cd)毒害耐受性影响的生理机制.Cd毒害导致龙葵幼苗出现氧化伤害,同时降低了幼苗超氧化物歧化酶(SOD)、过氧化氢酶(CAT)和抗坏血酸过氧化物酶(APX)活性.表油菜素内酯(eBL,人工合成的BR)处理增加了龙葵幼苗对Cd毒害的敏感性,与eBL处理的结果相反,施用油菜素唑(Brz,BR合

  1. Modeling the Control of Phonological Encoding in Bilingual Speakers

    Science.gov (United States)

    Roelofs, Ardi; Verhoef, Kim

    2006-01-01

    Phonological encoding is the process by which speakers retrieve phonemic segments for morphemes from memory and use the segments to assemble phonological representations of words to be spoken. When conversing in one language, bilingual speakers have to resist the temptation of encoding word forms using the phonological rules and representations of…

  2. Levels of Processing, Encoding Strategies, and Memory Development.

    Science.gov (United States)

    Owings, Richard A.; Baumeister, Alfred A.

    1979-01-01

    In three experiments, memory for intentionally encoded words was compared with memory for encodings, induced by asking semantic, phonemic, or surface questions. Subjects were second-, fourth-, and sixth-grade students, and junior and senior high school students. (Author/MP)

  3. Operation-Specific Encoding in Single-Digit Arithmetic

    Science.gov (United States)

    Zhou, Xinlin

    2011-01-01

    Solving simple arithmetic problems involves three stages: encoding the problem, retrieving or calculating the answer, and reporting the answer. This study compared the event-related potentials elicited by single-digit addition and multiplication problems to examine the relationship between encoding and retrieval/calculation stages. Results showed…

  4. Review of Random Phase Encoding in Volume Holographic Storage

    Directory of Open Access Journals (Sweden)

    Wei-Chia Su

    2012-09-01

    Full Text Available Random phase encoding is a unique technique for volume hologram which can be applied to various applications such as holographic multiplexing storage, image encryption, and optical sensing. In this review article, we first review and discuss diffraction selectivity of random phase encoding in volume holograms, which is the most important parameter related to multiplexing capacity of volume holographic storage. We then review an image encryption system based on random phase encoding. The alignment of phase key for decryption of the encoded image stored in holographic memory is analyzed and discussed. In the latter part of the review, an all-optical sensing system implemented by random phase encoding and holographic interconnection is presented.

  5. Encoding through patterns: regression tree-based neuronal population models.

    Science.gov (United States)

    Haslinger, Robert; Pipa, Gordon; Lewis, Laura D; Nikolić, Danko; Williams, Ziv; Brown, Emery

    2013-08-01

    Although the existence of correlated spiking between neurons in a population is well known, the role such correlations play in encoding stimuli is not. We address this question by constructing pattern-based encoding models that describe how time-varying stimulus drive modulates the expression probabilities of population-wide spike patterns. The challenge is that large populations may express an astronomical number of unique patterns, and so fitting a unique encoding model for each individual pattern is not feasible. We avoid this combinatorial problem using a dimensionality-reduction approach based on regression trees. Using the insight that some patterns may, from the perspective of encoding, be statistically indistinguishable, the tree divisively clusters the observed patterns into groups whose member patterns possess similar encoding properties. These groups, corresponding to the leaves of the tree, are much smaller in number than the original patterns, and the tree itself constitutes a tractable encoding model for each pattern. Our formalism can detect an extremely weak stimulus-driven pattern structure and is based on maximizing the data likelihood, not making a priori assumptions as to how patterns should be grouped. Most important, by comparing pattern encodings with independent neuron encodings, one can determine if neurons in the population are driven independently or collectively. We demonstrate this method using multiple unit recordings from area 17 of anesthetized cat in response to a sinusoidal grating and show that pattern-based encodings are superior to those of independent neuron models. The agnostic nature of our clustering approach allows us to investigate encoding by the collective statistics that are actually present rather than those (such as pairwise) that might be presumed. PMID:23607564

  6. Multiple Access Channel with States Known Noncausally at One Encoder and Only Strictly Causally at the Other Encoder

    CERN Document Server

    Zaidi, Abdellatif; Shamai, Shlomo

    2011-01-01

    We consider a two-user state-dependent multiaccess channel in which the states of the channel are known non-causally to one of the encoders and only strictly causally to the other encoder. Both encoders transmit a common message and, in addition, the encoder that knows the states non-causally transmits an individual message. We study the capacity region of this communication model. In the discrete memoryless case, we establish inner and outer bounds on the capacity region. Although the encoder that sends both messages knows the states fully, we show that the strictly causal knowledge of these states at the other encoder can be beneficial for this encoder, and in general enlarges the capacity region. Furthermore, we find an explicit characterization of the capacity in the case in which the two encoders transmit only the common message. In the Gaussian case, we characterize the capacity region for the model with individual message as well. Our converse proof in this case shows that, for this model, strictly cau...

  7. Encoding Active Device Elements at Nanowire Tips.

    Science.gov (United States)

    No, You-Shin; Gao, Ruixuan; Mankin, Max N; Day, Robert W; Park, Hong-Gyu; Lieber, Charles M

    2016-07-13

    Semiconductor nanowires and other one-dimensional materials are attractive for highly sensitive and spatially confined electrical and optical signal detection in biological and physical systems, although it has been difficult to localize active electronic or optoelectronic device function at one end of such one-dimensional structures. Here we report a new nanowire structure in which the material and dopant are modulated specifically at only one end of nanowires to encode an active two-terminal device element. We present a general bottom-up synthetic scheme for these tip-modulated nanowires and illustrate this with the synthesis of nanoscale p-n junctions. Electron microscopy imaging verifies the designed p-Si nanowire core with SiO2 insulating inner shell and n-Si outer shell with clean p-Si/n-Si tip junction. Electrical transport measurements with independent contacts to the p-Si core and n-Si shell exhibited a current rectification behavior through the tip and no detectable current through the SiO2 shell. Electrical measurements also exhibited an n-type response in conductance versus water-gate voltage with pulsed gate experiments yielding a temporal resolution of at least 0.1 ms and ∼90% device sensitivity localized to within 0.5 μm from the nanowire p-n tip. In addition, photocurrent experiments showed an open-circuit voltage of 0.75 V at illumination power of ∼28.1 μW, exhibited linear dependence of photocurrent with respect to incident illumination power with an estimated responsivity up to ∼0.22 A/W, and revealed localized photocurrent generation at the nanowire tip. The tip-modulated concept was further extended to a top-down/bottom-up hybrid approach that enabled large-scale production of vertical tip-modulated nanowires with a final synthetic yield of >75% with >4300 nanowires. Vertical tip-modulated nanowires were fabricated into >50 individually addressable nanowire device arrays showing diode-like current-voltage characteristics. These tip

  8. High-Efficient Parallel CAVLC Encoders on Heterogeneous Multicore Architectures

    Directory of Open Access Journals (Sweden)

    H. Y. Su

    2012-04-01

    Full Text Available This article presents two high-efficient parallel realizations of the context-based adaptive variable length coding (CAVLC based on heterogeneous multicore processors. By optimizing the architecture of the CAVLC encoder, three kinds of dependences are eliminated or weaken, including the context-based data dependence, the memory accessing dependence and the control dependence. The CAVLC pipeline is divided into three stages: two scans, coding, and lag packing, and be implemented on two typical heterogeneous multicore architectures. One is a block-based SIMD parallel CAVLC encoder on multicore stream processor STORM. The other is a component-oriented SIMT parallel encoder on massively parallel architecture GPU. Both of them exploited rich data-level parallelism. Experiments results show that compared with the CPU version, more than 70 times of speedup can be obtained for STORM and over 50 times for GPU. The implementation of encoder on STORM can make a real-time processing for 1080p @30fps and GPU-based version can satisfy the requirements for 720p real-time encoding. The throughput of the presented CAVLC encoders is more than 10 times higher than that of published software encoders on DSP and multicore platforms.

  9. Brassinosteroid signal transduction: An emerging picture

    Institute of Scientific and Technical Information of China (English)

    WANG Qiaomei; MA Ligeng

    2003-01-01

    Steroid hormones play essential roles in animal growth and development. Steroid signaling in animal system is focused on the direct gene regulation response mediated by its nuclear receptors. Recently, steroid hormones are also found in plants. Identification of BRI1 - a critical component of the plasma-membrane steroid receptor complex, and the related signal transduction pathway mediated by the membrane receptor have revealed an elementary picture of BR signaling from the cell surface perception to the activation of BR-responsive nuclear genes.

  10. Mechanisms of brassinosteroids interacting with multiple hormones

    OpenAIRE

    Zhang, Shanshan; Wei, Ying; Lu, Yangning; Wang, Xuelu

    2009-01-01

    Various environmental and internal cues play essential roles in regulating diverse aspects of plant growth and development. Phytohormones usually coordinate multiple stimuli to directly regulate multiple developmental programs. Recent studies have provided progresses into the complexity of their cross talk. Particularly, the signaling pathways of various phytohormones have been revealed, leading to the discovery of the mechanisms of the interplay among different hormone signaling pathways. Th...

  11. BRASSINOSTEROIDS IN BREEDING TECHNOLOGIES HEALTHCARE POTATO

    Directory of Open Access Journals (Sweden)

    Natalia Nikolaevna Koposova

    2014-01-01

    Full Text Available The regulator of anti-stress action Epin-Extra (24-epibrassinolide was tested in laboratory and field (protected ground conditions. The aim of this research was to study the influence of growth regulators on the growth, development and productivity of improved initial promising varieties of potato: Native (cultivated varieties Udacha and foreign (cultivated varieties Red Scarlett selections obtained by the method of apical meristem in the Volga-Vyatka region. The obtained results suggest a promising use of the product for improving the growth and development of plants in vitro. Adding Epin-Extra into an artificial culture medium at the final stage of micropropagation in vitro increases the height of plants by 29.6-47.7%, the number of internodes in plants by 26.4-25.7% depending on the cultivated variety, increases the root growth for cultivar Udacha 2.1 times and reduces the one for the cultivar Red Scarlett 1.9 times. The use of the Epin-Extra product-in recommended concentration for growing mini-tubers by seedling method in protected soil (greenhouse in the budding phase-increases the biometric indicators such as plant height (35.7-21.8%, number of stems in the bush (30.9-19.0% and mass of roots (19.1-8.5%, depending on the variety. As a result, the treatment with Epin-Extra increases productivity by 25.6-15.9%, the multiplication factor by 25.3-18.4%, as well as helps to reduce the prevalence (by 69.5-44.1% and development (by 50.0-44.3% of the late blight on the tops of potato plants, depending on the cultivar.

  12. The labeling of brassinosteroids by tritium

    Czech Academy of Sciences Publication Activity Database

    Marek, Aleš; Patil, Mahadeo Rajshekhar; Elbert, Tomáš

    2015-01-01

    Roč. 5, č. 80 (2015), s. 65214-65220. ISSN 2046-2069 R&D Projects: GA AV ČR IAA400550801 Institutional support: RVO:61388963 Keywords : brassinolide * hydrogen * isotopes Subject RIV: CC - Organic Chemistry Impact factor: 3.840, year: 2014

  13. Quantum Key Distribution using Multilevel Encoding Security Analysis

    CERN Document Server

    Bourennane, M; Björk, G; Gisin, Nicolas; Cerf, N J; Bourennane, Mohamed; Karlsson, Anders; Bjork, Gunnar; Gisin, Nicolas; Cerf, Nicolas

    2002-01-01

    We present security proofs for a protocol for Quantum Key Distribution (QKD) based on encoding in finite high-dimensional Hilbert spaces. This protocol is an extension of Bennett's and Brassard's basic protocol from two bases, two state encoding to a multi bases, multi state encoding. We analyze the mutual information between the legitimate parties and the eavesdropper, and the error rate, as function of the dimension of the Hilbert space, while considering optimal incoherent and coherent eavesdropping attacks. We obtain the upper limit for the legitimate party error rate to ensure unconditional security when the eavesdropper uses incoherent and coherent eavesdropping strategies. We have also consider realistic noise caused by detector's noise.

  14. Wavelength-encoded OCDMA system using opto-VLSI processors.

    Science.gov (United States)

    Aljada, Muhsen; Alameh, Kamal

    2007-07-01

    We propose and experimentally demonstrate a 2.5 Gbits/sper user wavelength-encoded optical code-division multiple-access encoder-decoder structure based on opto-VLSI processing. Each encoder and decoder is constructed using a single 1D opto-very-large-scale-integrated (VLSI) processor in conjunction with a fiber Bragg grating (FBG) array of different Bragg wavelengths. The FBG array spectrally and temporally slices the broadband input pulse into several components and the opto-VLSI processor generates codewords using digital phase holograms. System performance is measured in terms of the autocorrelation and cross-correlation functions as well as the eye diagram. PMID:17603568

  15. Integrated source and channel encoded digital communications system design study

    Science.gov (United States)

    Huth, G. K.

    1974-01-01

    Studies on the digital communication system for the direct communication links from ground to space shuttle and the links involving the Tracking and Data Relay Satellite (TDRS). Three main tasks were performed:(1) Channel encoding/decoding parameter optimization for forward and reverse TDRS links,(2)integration of command encoding/decoding and channel encoding/decoding; and (3) modulation coding interface study. The general communication environment is presented to provide the necessary background for the tasks and to provide an understanding of the implications of the results of the studies.

  16. Encoding of electrophysiology and other signals in MR images

    DEFF Research Database (Denmark)

    Hanson, Lars G; Lund, Torben E; Hanson, Christian G

    2007-01-01

    PURPOSE: To develop a gradient insensitive, generic technique for recording of non-MR signals by use of surplus scanner bandwidth. MATERIALS AND METHODS: Relatively simple battery driven hardware is used to transform one or more signals into radio waves detectable by the MR scanner. Similar...... to the "magstripe" technique used for encoding of soundtracks in motion pictures, the electrical signals are in this way encoded as artifacts appearing in the MR images or spectra outside the region of interest. The encoded signals are subsequently reconstructed from the signal recorded by the scanner. RESULTS...

  17. What is a "good" encoding of guarded choice?

    DEFF Research Database (Denmark)

    Nestmann, Uwe

    The pi-calculus with synchronous output and mixed-guarded choices is strictly more expressive than the pi-calculus with asynchronous output and no choice. This result was recently proved by C. Palamidessi and, as a corollary, she showed that there is no fully compositional encoding from the former...... into the latter that preserves divergence-freedom and symmetries. This paper argues that there are nevertheless "good" encodings between these calculi. In detail, we present a series of encodings for languages with (1) input-guarded choice, (2) both input and output-guarded choice, and (3) mixed-guarded...

  18. The mitochondrial genome encodes abundant small noncoding RNAs

    Institute of Scientific and Technical Information of China (English)

    Seungil Ro; Hsiu-Yen Ma; Chanjae Park; Nicole Ortogero; Rui Song; Grant W Hennig; Huili Zheng

    2013-01-01

    Small noncoding RNAs identified thus far are all encoded by the nuclear genome.Here,we report that the murine and human mitochondriai genomes encode thousands of small noncoding RNAs,which are predominantly derived from the sense transcripts of the mitochondrial genes (host genes),and we termed these small RNAs mitochondrial genome-encoded small RNAs (mitosRNAs).DICER inactivation affected,but did not completely abolish mitosRNA production.MitosRNAs appear to be products of currently unidentified mitochondrial ribonucleases.Overexpression of mitosRNAs enhanced expression levels of their host genes in vitro,and dysregulated mitosRNA expression was generally associated with aberrant mitochondrial gene expression in vivo.Our data demonstrate that in addition to 37 known mitochondrial genes,the mammalian mitochondrial genome also encodes abundant mitosRNAs,which may play an important regulatory role in the control of mitochondrial gene expression in the cell.

  19. Two Genes Encoding Uracil Phosphoribosyltransferase Are Present in Bacillus subtilis

    DEFF Research Database (Denmark)

    Martinussen, Jan; Glaser, Philippe; Andersen, Paal S.;

    1995-01-01

    Uracil phosphoribosyltransferase (UPRTase) catalyzes the key reaction in the salvage of uracil in many microorganisms. Surprisingly, two genes encoding UPRTase activity were cloned from Bacillus subtilis by complementation of an Escherichia coli mutant. The genes were sequenced, and the putative...

  20. A New Fast Encoding Algorithm for Data Compression

    Institute of Scientific and Technical Information of China (English)

    LIULijuan; ZOUXuecheng; SHENXubang

    2004-01-01

    Vector quantization (VQ) is an effective lossy compression technique for data compression. One of the key problems for basic VQ method, i.e., full search algorithm, is that it is computationally intensive. Many fast encoding algorithms have been developed for this reason. Although the latest fast encoding algorithm introduced by Byung Cheol Song et al. generates better results than some other algorithms, its pyramid structure is not suitable for representing an image with multiresolution. In this paper, a reasonable half-L2-norm pyramid data structure and a new method of searching and processing codewords is provided to significantly speed up the searching process especially for high vector dimensions and codebook with large size, reduce the actual requirement for memory and produce the same encoded image quality as full search algorithm. Simulation results show that the proposed method outperforms some existing related fast encoding algorithms.

  1. Current Density Imaging through Acoustically Encoded Magnetometry: A Theoretical Exploration

    CERN Document Server

    Sheltraw, Daniel J

    2014-01-01

    The problem of determining a current density confined to a volume from measurements of the magnetic field it produces exterior to that volume is known to have non-unique solutions. To uniquely determine the current density, or the non-silent components of it, additional spatial encoding of the electric current is needed. In biological systems such as the brain and heart, which generate electric current associated with normal function, a reliable means of generating such additional encoding, on a spatial and temporal scale meaningful to the study of such systems, would be a boon for research. This paper explores a speculative method by which the required additional encoding might be accomplished, on the time scale associated with the propagation of sound across the volume of interest, by means of the application of a radially encoding pulsed acoustic spherical wave.

  2. Quantitative assessment of myocardial motion from velocity encoded MRI

    OpenAIRE

    Lutz Anja; Paul Jan; Etyngier Patrick; Bornstedt Axel; Bernhardt Peter; Nienhaus Gerd; Rottbauer Wolfgang; Rasche Volker

    2012-01-01

    International audience It is objective of this study to investigate the potential role of different automatically derived quantitative parameters derived from velocity encoded MRI for the identification of asynchronic patients.

  3. Polypeptides having cellobiohydrolase activity and polynucleotides encoding same

    Energy Technology Data Exchange (ETDEWEB)

    Spodsberg, Nikolaj

    2016-06-28

    The present invention relates to isolated polypeptides having cellobiohydrolase activity and polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  4. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Yu; Tang, Lan; Henriksen, Svend Hostgaard Bang

    2016-05-17

    The present invention provides isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also provides nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  5. Executable Set Theory and Arithmetic Encodings in Prolog

    CERN Document Server

    Tarau, Paul

    2008-01-01

    The paper is organized as a self-contained literate Prolog program that implements elements of an executable finite set theory with focus on combinatorial generation and arithmetic encodings. The complete Prolog code is available at http://logic.csci.unt.edu/tarau/research/2008/pHFS.zip . First, ranking and unranking functions for some "mathematically elegant" data types in the universe of Hereditarily Finite Sets with Urelements are provided, resulting in arithmetic encodings for powersets, hypergraphs, ordinals and choice functions. After implementing a digraph representation of Hereditarily Finite Sets we define {\\em decoration functions} that can recover well-founded sets from encodings of their associated acyclic digraphs. We conclude with an encoding of arbitrary digraphs and discuss a concept of duality induced by the set membership relation. In the process, we uncover the surprising possibility of internally sharing isomorphic objects, independently of their language level types and meanings.

  6. Motion corrected intracranial MRA using PROPELLER with RF quadratic encoding.

    Science.gov (United States)

    Zwart, Nicholas R; Pipe, James G

    2009-06-01

    A new motion corrected Time-of-Flight MRA technique named Variable Pitch PROPELLER is presented. This technique employs the PROPELLER acquisition and reconstruction scheme for in-plane bulk motion correction. A non- Fourier through-plane encoding mechanism called quadratic encoding boosts SNR, relative to conventional 2D MRA, in lieu of traditional 3D encoding. Partial Fourier encoding is applied in the slice direction for a further reduction in scan time. This work details the construction and optimization of this technique. VPPROP MRAs are compared with a clinical MOTSA protocol. Initial results show promising robustness to bulk motion effects. The comparisons with MOTSA provide insight as to the additions required to create a comparable scan. PMID:19353668

  7. Discoveries and functions of virus-encoded MicroRNAs

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou 730046, ChinaVirus-encoded microRNAs (miRNAs) are a new kind of miRNAs that regulate the expression of target gene in host cells or viruses through inducing cleavage of mRNA, repressing translation, etc., and change the processes of host cells or replicate viruses to escape or resist immune surveillance of host and protect viruses themselves. It has become a hot topic to discover viral genes encoding miRNAs and their target genes, and to identify their functions. This review provides background information on the history of virally encoded miRNAs including their genomic distribution, functions and mechanisms.In addition, we discuss the similarities and differences between virus- and host-encoded miRNAs, the future directions of researches in viral miRNAs and their applications in diseases control and therapy.

  8. A Correlational Encoder Decoder Architecture for Pivot Based Sequence Generation

    OpenAIRE

    SAHA, AMRITA; Khapra, Mitesh M.; Chandar, Sarath; Rajendran, Janarthanan; Cho, Kyunghyun

    2016-01-01

    Interlingua based Machine Translation (MT) aims to encode multiple languages into a common linguistic representation and then decode sentences in multiple target languages from this representation. In this work we explore this idea in the context of neural encoder decoder architectures, albeit on a smaller scale and without MT as the end goal. Specifically, we consider the case of three languages or modalities X, Z and Y wherein we are interested in generating sequences in Y starting from inf...

  9. Integrative annotation of chromatin elements from ENCODE data

    OpenAIRE

    Hoffman, Michael M.; Ernst, Jason; Wilder, Steven P.; Kundaje, Anshul; Harris, Robert S.; Libbrecht, Max; Giardine, Belinda; Ellenbogen, Paul M.; Bilmes, Jeffrey A.; Birney, Ewan; Hardison, Ross C.; Dunham, Ian; Kellis, Manolis; Noble, William Stafford

    2012-01-01

    The ENCODE Project has generated a wealth of experimental information mapping diverse chromatin properties in several human cell lines. Although each such data track is independently informative toward the annotation of regulatory elements, their interrelations contain much richer information for the systematic annotation of regulatory elements. To uncover these interrelations and to generate an interpretable summary of the massive datasets of the ENCODE Project, we apply unsupervised learnin...

  10. Selective Memories: Infants’ Encoding is Enhanced in Selection Via Suppression

    OpenAIRE

    Markant, Julie; Amso, Dima

    2013-01-01

    The present study examined the hypothesis that inhibitory visual selection mechanisms play a vital role in memory by limiting distractor interference during item encoding. In Experiment 1a we used a modified spatial cueing task in which 9-month-old infants encoded multiple category exemplars in the contexts of an attention orienting mechanism involving suppression (i.e., inhibition of return, IOR) versus one that does not (i.e., facilitation). At test, infants in the IOR condition showed both...

  11. Security enhanced BioEncoding for protecting iris codes

    Science.gov (United States)

    Ouda, Osama; Tsumura, Norimichi; Nakaguchi, Toshiya

    2011-06-01

    Improving the security of biometric template protection techniques is a key prerequisite for the widespread deployment of biometric technologies. BioEncoding is a recently proposed template protection scheme, based on the concept of cancelable biometrics, for protecting biometric templates represented as binary strings such as iris codes. The main advantage of BioEncoding over other template protection schemes is that it does not require user-specific keys and/or tokens during verification. Besides, it satisfies all the requirements of the cancelable biometrics construct without deteriorating the matching accuracy. However, although it has been shown that BioEncoding is secure enough against simple brute-force search attacks, the security of BioEncoded templates against more smart attacks, such as record multiplicity attacks, has not been sufficiently investigated. In this paper, a rigorous security analysis of BioEncoding is presented. Firstly, resistance of BioEncoded templates against brute-force attacks is revisited thoroughly. Secondly, we show that although the cancelable transformation employed in BioEncoding might be non-invertible for a single protected template, the original iris code could be inverted by correlating several templates used in different applications but created from the same iris. Accordingly, we propose an important modification to the BioEncoding transformation process in order to hinder attackers from exploiting this type of attacks. The effectiveness of adopting the suggested modification is validated and its impact on the matching accuracy is investigated empirically using CASIA-IrisV3-Interval dataset. Experimental results confirm the efficacy of the proposed approach and show that it preserves the matching accuracy of the unprotected iris recognition system.

  12. A SAT Encoding for Multi-dimensional Packing Problems

    Science.gov (United States)

    Grandcolas, Stéphane; Pinto, Cédric

    The Orthogonal Packing Problem (OPP) consists in determining if a set of items can be packed into a given container. This decision problem is NP-complete. Fekete et al. modelled the problem in which the overlaps between the objects in each dimension are represented by interval graphs. In this paper we propose a SAT encoding of Fekete et al. characterization. Some results are presented, and the efficiency of this approach is compared with other SAT encodings.

  13. Boolean Equi-propagation for Optimized SAT Encoding

    CERN Document Server

    Metodi, Amit; Lagoon, Vitaly; Stuckey, Peter J

    2011-01-01

    We present an approach to propagation based solving, Boolean equi-propagation, where constraints are modelled as propagators of information about equalities between Boolean literals. Propagation based solving applies this information as a form of partial evaluation resulting in optimized SAT encodings. We demonstrate for a variety of benchmarks that our approach results in smaller CNF encodings and leads to speed-ups in solving times.

  14. Implementation of a High-speed Sinusoidal Encoder Interpolation System

    OpenAIRE

    Lepple, Charles

    2004-01-01

    In order to meet higher performance demands on brushless motor controllers, motor feedback signals must meet correspondingly higher standards. Brushless motor controllers require angular feedback for motor commutation, and generally for one or more of the following: torque, velocity or position regulation. These feedback categories impose different requirements on the control system. In many brushless motor applications, sinusoidal encoders have significant advantages over square-wave encoder...

  15. Theory of multisource crosstalk reduction by phase-encoded statics

    KAUST Repository

    Schuster, Gerard T.

    2011-03-01

    Formulas are derived that relate the strength of the crosstalk noise in supergather migration images to the variance of time, amplitude and polarity shifts in encoding functions. A supergather migration image is computed by migrating an encoded supergather, where the supergather is formed by stacking a large number of encoded shot gathers. Analysis reveals that for temporal source static shifts in each shot gather, the crosstalk noise is exponentially reduced with increasing variance of the static shift and the square of source frequency. This is not too surprising because larger time shifts lead to less correlation between traces in different shot gathers, and so should tend to reduce the crosstalk noise. Analysis also reveals that combining both polarity and time statics is a superior encoding strategy compared to using either polarity statics or time statics alone. Signal-to-noise (SNR) estimates show that for a standard migration image and for an image computed by migrating a phase-encoded supergather; here, G is the number of traces in a shot gather, I is the number of stacking iterations in the supergather and S is the number of encoded/blended shot gathers that comprise the supergather. If the supergather can be uniformly divided up into Q unique sub-supergathers, then the resulting SNR of the final image is, which means that we can enhance image quality but at the expense of Q times more cost. The importance of these formulas is that they provide a precise understanding between different phase encoding strategies and image quality. Finally, we show that iterative migration of phase-encoded supergathers is a special case of passive seismic interferometry. We suggest that the crosstalk noise formulas can be helpful in designing optimal strategies for passive seismic interferometry and efficient extraction of Green\\'s functions from simulated supergathers. © 2011 The Authors Geophysical Journal International © 2011 RAS.

  16. Frequency- and Phase Encoded SSVEP Using Spatiotemporal Beamforming

    OpenAIRE

    Wittevrongel, Benjamin; Hulle, Marc van

    2016-01-01

    In brain-computer interfaces (BCIs) based on steady-state visual evoked potentials (SSVEPs) the number of selectable targets is rather limited when each target has its own stimulation frequency. One way to remedy this is by combining frequency- with phase encoding. We introduce a new multivariate spatiotemporal filter, based on Linearly Constrained Minimum Variance (LCMV) beamforming, for discriminating between frequency-phase encoded targets more accurately, even when using short signal leng...

  17. Neural activity during encoding predicts false memories created by misinformation

    OpenAIRE

    Okado, Yoko; Stark, Craig E.L.

    2005-01-01

    False memories are often demonstrated using the misinformation paradigm, in which a person's recollection of a witnessed event is altered after exposure to misinformation about the event. The neural basis of this phenomenon, however, remains unknown. We used fMRI to investigate encoding processes during the viewing of an event and misinformation to see whether neural activity during either encoding phase could predict what would be remembered. fMRI data were collected as participants studied ...

  18. Efficient Encoding and Rendering of Time-Varying Volume Data

    Science.gov (United States)

    Ma, Kwan-Liu; Smith, Diann; Shih, Ming-Yun; Shen, Han-Wei

    1998-01-01

    Visualization of time-varying volumetric data sets, which may be obtained from numerical simulations or sensing instruments, provides scientists insights into the detailed dynamics of the phenomenon under study. This paper describes a coherent solution based on quantization, coupled with octree and difference encoding for visualizing time-varying volumetric data. Quantization is used to attain voxel-level compression and may have a significant influence on the performance of the subsequent encoding and visualization steps. Octree encoding is used for spatial domain compression, and difference encoding for temporal domain compression. In essence, neighboring voxels may be fused into macro voxels if they have similar values, and subtrees at consecutive time steps may be merged if they are identical. The software rendering process is tailored according to the tree structures and the volume visualization process. With the tree representation, selective rendering may be performed very efficiently. Additionally, the I/O costs are reduced. With these combined savings, a higher level of user interactivity is achieved. We have studied a variety of time-varying volume datasets, performed encoding based on data statistics, and optimized the rendering calculations wherever possible. Preliminary tests on workstations have shown in many cases tremendous reduction by as high as 90% in both storage space and inter-frame delay.

  19. Dissociating distractor-filtering at encoding and during maintenance.

    Science.gov (United States)

    McNab, Fiona; Dolan, Raymond J

    2014-06-01

    The effectiveness of distractor-filtering is a potentially important determinant of working memory capacity (WMC). However, a distinction between the contributions of distractor-filtering at WM encoding as opposed to filtering during maintenance has not been made and the assumption is that these rely on the same mechanism. Within 2 experiments, 1 conducted in the laboratory with 21 participants, and the other played as a game on smartphones (n = 3,247) we measure WMC without distractors, and present distractors during encoding or during the delay period of a WM task to determine performance associated with distraction at encoding and during maintenance. Despite differences in experimental setting and paradigm design between the 2 studies, we show a unique contribution to WMC from both encoding and delay distractor performance in both experiments, while controlling for performance in the absence of distraction. Thus, within 2 separate experiments, 1 involving an extremely large cohort of 3,247 participants, we show a dissociation between encoding and delay distractor-filtering, indicating that separate mechanisms may contribute to WMC. PMID:24512609

  20. Excitation and geometrically matched local encoding of curved slices.

    Science.gov (United States)

    Weber, Hans; Gallichan, Daniel; Schultz, Gerrit; Cocosco, Chris A; Littin, Sebastian; Reichardt, Wilfried; Welz, Anna; Witschey, Walter; Hennig, Jürgen; Zaitsev, Maxim

    2013-05-01

    In this work, the concept of excitation and geometrically matched local in-plane encoding of curved slices (ExLoc) is introduced. ExLoc is based on a set of locally near-orthogonal spatial encoding magnetic fields, thus maintaining a local rectangular shape of the individual voxels and avoiding potential problems arising due to highly irregular voxel shapes. Unlike existing methods for exciting curved slices based on multidimensional radiofrequency-pulses, excitation and geometrically matched local encoding of curved slices does not require long duration or computationally expensive radiofrequency-pulses. As each encoding field consists of a superposition of potentially arbitrary (spatially linear or nonlinear) magnetic field components, the resulting field shape can be adapted with high flexibility to the specific region of interest. For extended nonplanar structures, this results in improved relevant volume coverage for fewer excited slices and thus increased efficiency. In addition to the mathematical description for the generation of dedicated encoding fields and data reconstruction, a verification of the ExLoc concept in phantom experiments and examples for in vivo curved single and multislice imaging are presented. PMID:22711656

  1. Effect of Encoding Method on the Distribution of Cardiac Arrhythmias

    CERN Document Server

    Mora, Luis A

    2011-01-01

    This paper presents the evaluation of the effect of the method of ECG signal encoding, based on nonlinear characteristics such as information entropy and Lempel-Ziv complexity, on the distribution of cardiac arrhythmias. Initially proposed a procedure electrocardiographic gating to compensate for errors inherent in the process of filtering segments. For the evaluation of distributions and determine which of the different encoding methods produces greater separation between different kinds of arrhythmias studied (AFIB, AFL, SVTA, VT, Normal's), use a function based on the dispersion of the elements on the centroid of its class, the result being that the best encoding for the entire system is through the method of threshold value for a ternary code with E = 1 / 12.

  2. Color image encoding in DOST domain using DWT and SVD

    Science.gov (United States)

    Kumar, Manoj; Agrawal, Smita

    2015-12-01

    In this paper, a new color image encoding and decoding technique based on Discrete Orthonormal Stockwell Transform (DOST) using Discrete Wavelet Transform (DWT) and Singular Value Decomposition (SVD) is proposed. The images are encrypted using bands of DOST and wavelets along with singular values of wavelet subbands. We have used the number of bands of DOST, values and arrangement of some predefined parameters using singular values of all wavelet subbands and arrangement of wavelet subbands as encoding and decoding keys in all three color planes. To ensure the correct decoding of the encoded image, it is necessary to use all the keys in correct order along with their exact values. The comparison of our technique with one of the recently proposed techniques and experimental results is used to analyze the effectiveness of the proposed technique. The proposed technique can be used for transmitting a color image more securely and efficiently through both secured and unsecured communication network.

  3. A Metric Encoding for Bounded Model Checking (extended version)

    CERN Document Server

    Pradella, Matteo; Pietro, Pierluigi San

    2009-01-01

    In Bounded Model Checking both the system model and the checked property are translated into a Boolean formula to be analyzed by a SAT-solver. We introduce a new encoding technique which is particularly optimized for managing quantitative future and past metric temporal operators, typically found in properties of hard real time systems. The encoding is simple and intuitive in principle, but it is made more complex by the presence, typical of the Bounded Model Checking technique, of backward and forward loops used to represent an ultimately periodic infinite domain by a finite structure. We report and comment on the new encoding technique and on an extensive set of experiments carried out to assess its feasibility and effectiveness.

  4. Faster shot-record depth migrations using phase encoding

    Energy Technology Data Exchange (ETDEWEB)

    Morton, S.A. [Amerada Hess Corp. (United States); Ober, C.C. [Sandia National Labs., Albuquerque, NM (United States)

    1998-08-01

    Phase encoding of shot records provides a means of imaging a number of shots within a single migration. This results in a reduction in the required computation for a complete image, a reduction by the number of shots used in each individual migration, trading this increase in speed for additional noise in the resulting image. Some methods for phase encoding have been shown to limit this noise to a tolerable range when combining several shots, enabling speed ups of a factor of a few. In this paper, the authors present a use of phase encoding which allows faster imaging by an order of magnitude or more, with the additional benefit that the individual migrations can be stopped whenever the answer is good enough. This approach may ultimately render 3-D frequency-domain prestack depth migration cost effective.

  5. Encoding, training and retrieval in ferroelectric tunnel junctions

    Science.gov (United States)

    Xu, Hanni; Xia, Yidong; Xu, Bo; Yin, Jiang; Yuan, Guoliang; Liu, Zhiguo

    2016-05-01

    Ferroelectric tunnel junctions (FTJs) are quantum nanostructures that have great potential in the hardware basis for future neuromorphic applications. Among recently proposed possibilities, the artificial cognition has high hopes, where encoding, training, memory solidification and retrieval constitute a whole chain that is inseparable. However, it is yet envisioned but experimentally unconfirmed. The poor retention or short-term store of tunneling electroresistance, in particular the intermediate states, is still a key challenge in FTJs. Here we report the encoding, training and retrieval in BaTiO3 FTJs, emulating the key features of information processing in terms of cognitive neuroscience. This is implemented and exemplified through processing characters. Using training inputs that are validated by the evolution of both barrier profile and domain configuration, accurate recalling of encoded characters in the retrieval stage is demonstrated.

  6. Fault Secure Encoder and Decoder with Clock Gating

    Directory of Open Access Journals (Sweden)

    N.Kapileswar

    2012-04-01

    Full Text Available This paper presents circuit design for a low power fault secure encoder and decoder system. Memory cells in logic circuits have been protected from soft errors for more than a decade due to increase in soft error rates. In this paper the circuitry around the memory block have been susceptible to soft errors and must be protected from faults. The proposed design uses error correcting codes and ring counter addressing scheme. In the ring counter several new clock gating techniques are proposed to reduce power consumption. A fault secure Encoder and Decoder error free low power logic circuits can be achieved by the proposed design. Simulation results show great improvement in power consumption. Fault secure Encoder and Decoder with clock gated by CG-element consumes approximately half the power of that consumed by the fault free circuit which doesn’t employ clock gating technique

  7. Automatic Encoding and Language Detection in the GSDL

    Directory of Open Access Journals (Sweden)

    Otakar Pinkas

    2014-10-01

    Full Text Available Automatic detection of encoding and language of the text is part of the Greenstone Digital Library Software (GSDL for building and distributing digital collections. It is developed by the University of Waikato (New Zealand in cooperation with UNESCO. The automatic encoding and language detection in Slavic languages is difficult and it sometimes fails. The aim is to detect cases of failure. The automatic detection in the GSDL is based on n-grams method. The most frequent n-grams for Czech are presented. The whole process of automatic detection in the GSDL is described. The input documents to test collections are plain texts encoded in ISO-8859-1, ISO-8859-2 and Windows-1250. We manually evaluated the quality of automatic detection. To the causes of errors belong the improper language model predominance and the incorrect switch to Windows-1250. We carried out further tests on documents that were more complex.

  8. Nucleic acids encoding antifungal polypeptides and uses thereof

    Science.gov (United States)

    Altier, Daniel J.; Ellanskaya, I. A.; Gilliam, Jacob T.; Hunter-Cevera, Jennie; Presnail, James K; Schepers, Eric; Simmons, Carl R.; Torok, Tamas; Yalpani, Nasser

    2010-11-02

    Compositions and methods for protecting a plant from a pathogen, particularly a fungal pathogen, are provided. Compositions include an amino acid sequence, and variants and fragments thereof, for an antipathogenic polypeptide that was isolated from a fungal fermentation broth. Nucleic acid molecules that encode the antipathogenic polypeptides of the invention, and antipathogenic domains thereof, are also provided. A method for inducing pathogen resistance in a plant using the nucleotide sequences disclosed herein is further provided. The method comprises introducing into a plant an expression cassette comprising a promoter operably linked to a nucleotide sequence that encodes an antipathogenic polypeptide of the invention. Compositions comprising an antipathogenic polypeptide or a transformed microorganism comprising a nucleic acid of the invention in combination with a carrier and methods of using these compositions to protect a plant from a pathogen are further provided. Transformed plants, plant cells, seeds, and microorganisms comprising a nucleotide sequence that encodes an antipathogenic polypeptide of the invention are also disclosed.

  9. Distinctiveness and encoding effects in online sentence comprehension

    Directory of Open Access Journals (Sweden)

    Philip eHofmeister

    2014-12-01

    Full Text Available In explicit memory recall and recognition tasks, elaboration and contextual isolation both facilitate memory performance. Here, we investigate these effects in the context of sentence processing: targets for retrieval during online sentence processing of English object relative clause constructions differ in the amount of elaboration associated with the target noun phrase, or the homogeneity of superficial features (text color. Experiment 1 shows that greater elaboration for targets during the encoding phase reduces reading times at retrieval sites, but elaboration of non-targets has considerably weaker effects. Experiment 2 illustrates that processing isolated superficial features of target noun phrases --- here, a green word in a sentence with words colored white --- does not lead to enhanced memory performance, despite triggering longer encoding times. These results are interpreted in the light of the memory models of Nairne 1990, 2001, 2006, which state that encoding remnants contribute to the set of retrieval cues that provide the basis for similarity-based interference effects.

  10. Encoding degree testing in a 4f architecture

    Science.gov (United States)

    Amaya, Dafne; Tebaldi, Myrian; Torroba, Roberto; Bolognini, Néstor

    2011-08-01

    The distribution of the encrypted information at the output of an encoding system is of major concern. When the encrypted information is conveyed to the final user, the finite size of the recording medium affects the quality of the encoded information. In this case, we face possible information degradation when recovering. In the present contribution we focus our attention on the finite size of the recorder medium in an actual experimental situation. In order to improve the quality of the decrypted data, we study the role that both the scattering element size of the masks and the input object size play in the encrypting system. Therefore, we analyze the optimal spatial distribution of the encoded information at the output of a 4f encrypting system. We present examples that support our proposal.

  11. THE RELATIONSHIP BETWEEN ENCODING ABILITY AND AGGRESSIVE BEHAVIOR.

    Science.gov (United States)

    Tsamis, Vasiliki J; Rebok, George W; Montague, David R

    2009-03-26

    While past research efforts have reported a relationship between encoding ability and aggressive behavior in children, the relationship between encoding ability and adult aggressiveness has not been examined. Encoding, an element of attention, refers to the ability to recall and reorder information stored in memory. Using selected cognitive tests and a self-report measure of aggressive behavior in a sample of community college students (n=55), this study investigated the relationship between encoding ability and aggressive behavior, (i.e., physical aggression, verbal aggression, anger, hostility, indirect aggression, and total aggression). Aggressive behavior was assessed by the Aggression Questionnaire of the Buss-Durkee Hostility Inventory, a widely-used measure of aggressive behavior. Encoding was measured using the WAIS-III Digit Span and Arithmetic subtests. Initial analyses showed no significant correlations between the cognitive measures and the five scales of aggressive behavior. However, there was a significant age-related association between scores on the cognitive measures and the indices of aggressive behavior. Two groups were created, those who reported attention problems and those who did not report attention problems. When the two groups were compared, participants who had a history of attention problems were verbally more aggressive than participants with a negative history of attention problems, and they were generally more aggressive. A composite score, called an "encoding score," was related to scores on the aggressive behavior scales. Moreover, the age-related relationship between these two variables suggests that the relationship is maturational and may disappear as an individual ages. Concerning the latter, participants in the current study were enrolled in junior college. Therefore, persons who had attention problems and were aggressive may not have pursued higher education. PMID:19953190

  12. Accelerated radial Fourier-velocity encoding using compressed sensing

    Energy Technology Data Exchange (ETDEWEB)

    Hilbert, Fabian; Han, Dietbert [Wuerzburg Univ. (Germany). Inst. of Radiology; Wech, Tobias; Koestler, Herbert [Wuerzburg Univ. (Germany). Inst. of Radiology; Wuerzburg Univ. (Germany). Comprehensive Heart Failure Center (CHFC)

    2014-10-01

    Purpose:Phase Contrast Magnetic Resonance Imaging (MRI) is a tool for non-invasive determination of flow velocities inside blood vessels. Because Phase Contrast MRI only measures a single mean velocity per voxel, it is only applicable to vessels significantly larger than the voxel size. In contrast, Fourier Velocity Encoding measures the entire velocity distribution inside a voxel, but requires a much longer acquisition time. For accurate diagnosis of stenosis in vessels on the scale of spatial resolution, it is important to know the velocity distribution of a voxel. Our aim was to determine velocity distributions with accelerated Fourier Velocity Encoding in an acquisition time required for a conventional Phase Contrast image. Materials and Methods:We imaged the femoral artery of healthy volunteers with ECG - triggered, radial CINE acquisition. Data acquisition was accelerated by undersampling, while missing data were reconstructed by Compressed Sensing. Velocity spectra of the vessel were evaluated by high resolution Phase Contrast images and compared to spectra from fully sampled and undersampled Fourier Velocity Encoding. By means of undersampling, it was possible to reduce the scan time for Fourier Velocity Encoding to the duration required for a conventional Phase Contrast image. Results:Acquisition time for a fully sampled data set with 12 different Velocity Encodings was 40 min. By applying a 12.6 - fold retrospective undersampling, a data set was generated equal to 3:10 min acquisition time, which is similar to a conventional Phase Contrast measurement. Velocity spectra from fully sampled and undersampled Fourier Velocity Encoded images are in good agreement and show the same maximum velocities as compared to velocity maps from Phase Contrast measurements. Conclusion: Compressed Sensing proved to reliably reconstruct Fourier Velocity Encoded data. Our results indicate that Fourier Velocity Encoding allows an accurate determination of the velocity

  13. Study of an incremental optical encoder using speckle

    Science.gov (United States)

    Perez Quintián, Fernando; Lutenberg, Ariel; Rebollo, María Aurora

    2006-09-01

    We present a study of the performance of an incremental optical encoder that works using speckle pattern illumination and a phase grating. The operational principle of the encoder lies in measuring the variations of a speckle pattern passing through the phase grating that can be displaced. This study is described theoretically by a model based on the scalar diffraction theory in the Fresnel zone. The intensity correlation of the modified speckle as a function of the grating displacement is obtained and compared with experimental results. Likewise, the mounting tolerances of the proposed system are analyzed.

  14. Frequency- and Phase Encoded SSVEP Using Spatiotemporal Beamforming

    Science.gov (United States)

    Van Hulle, Marc M.

    2016-01-01

    In brain-computer interfaces (BCIs) based on steady-state visual evoked potentials (SSVEPs) the number of selectable targets is rather limited when each target has its own stimulation frequency. One way to remedy this is by combining frequency- with phase encoding. We introduce a new multivariate spatiotemporal filter, based on Linearly Constrained Minimum Variance (LCMV) beamforming, for discriminating between frequency-phase encoded targets more accurately, even when using short signal lengths than with (extended) Canonical Correlation Analysis (CCA), which is traditionally posited for this stimulation paradigm. PMID:27486801

  15. Engineering a fully GPU-accelerated H.264 encoder

    Science.gov (United States)

    Li, Bowei; Deng, Yangdong S.

    2013-07-01

    H.264/AVC is the most popular video coding standard and playing an essential role in today's Internet based content-delivery businesses. H.264's encoding process is highly computationally expensive due to the integration of complex video coding techniques. As a result, transcoding has become a bottleneck of content-hosting services. Recently, general purpose computing on graphics processing units (GPUs) is rapidly rising as a popular computing model to expedite time-consuming applications. In this paper, we propose a fully GPU-accelerated H.264 encoder. Experimental results show that a 100% speed-up ratio can be achieved.

  16. The design and implementation of TPC encoder and decoder

    Science.gov (United States)

    Xiang, L. J.; Wang, Z. B.; Yuan, J. B.; Zheng, L. H.

    2016-02-01

    Based on the analysis and simulation of TPC codec principle and iteration decoding algorithm based on Chase 2, the design and implementation methods of TPC encoder and decoder are presented in this paper. In particular, circuit design and implementation flow of soft-input soft-output modified method in decoder algorithm and iteration decoding are analyzed. Aiming at (64,57,4) TPC, when the iteration times is 3 and the uncertain position number is 3, simulation and implementation results show that at least 6.8dB encoding gain can be obtained under the condition of BER=10-6

  17. Identification and Function of MicroRNAs Encoded by Herpesviruses

    Institute of Scientific and Technical Information of China (English)

    Zhi-qing Bai; Xiu-fen Lei; Lin-ding Wang; Shou-jiang Gao

    2008-01-01

    MicroRNAs (miRNAs) play important roles in eukaryotes,plants and some viruses.It is increasingly clear that miRNAs-encoded by viruses can affect the viral life cycle and host physiology.Viral miRNAs could repress the innate and adaptive host immunity,modulate cellular signaling pathways,and regulate the expression of cellular and viral genes.These functions facilitate viral acute and persistent infections,and have profound effects on the host cell survival and disease progression.Here,we discuss the miRNAs encoded by herpesviruses,and their regulatory roles involved in virus-host interactions.

  18. Practical Programming with Higher-Order Encodings and Dependent Types

    DEFF Research Database (Denmark)

    Poswolsky, Adam; Schürmann, Carsten

    2008-01-01

    , tedious, and error-prone. In this paper, we describe the underlying calculus of Delphin. Delphin is a fully implemented functional-programming language supporting reasoning over higher-order encodings and dependent types, while maintaining the benefits of HOAS. More specifically, just as representations...... utilizing HOAS free the programmer from concerns of handling explicit contexts and substitutions, our system permits programming over such encodings without making these constructs explicit, leading to concise and elegant programs. To this end our system distinguishes bindings of variables intended...... for instantiation from those that will remain uninstantiated, utilizing a variation of Miller and Tiu’s ∇-quantifier [1]....

  19. Modified 8×8 quantization table and Huffman encoding steganography

    Science.gov (United States)

    Guo, Yongning; Sun, Shuliang

    2014-10-01

    A new secure steganography, which is based on Huffman encoding and modified quantized discrete cosine transform (DCT) coefficients, is provided in this paper. Firstly, the cover image is segmented into 8×8 blocks and modified DCT transformation is applied on each block. Huffman encoding is applied to code the secret image before embedding. DCT coefficients are quantized by modified quantization table. Inverse DCT(IDCT) is conducted on each block. All the blocks are combined together and the steg image is finally achieved. The experiment shows that the proposed method is better than DCT and Mahender Singh's in PSNR and Capacity.

  20. Effect of PCM encoding on wide band telemetry data

    Science.gov (United States)

    Cox, T. F.; Nichols, M. H.

    In order to comply with certain mission requirements, it is necessary to encode telemetry data into pulse code modulation (PCM). For this reason, test data have been obtained in order to determine the effects of quantization errors and bit errors with special reference to wide-band noise-like data signals involving data reduction by spectral analysis. The use of notch noises tests for determining coder/decoder (CODEC) performance has been evaluated. Test procedures and test results are given using CODEC configurations of 4 to 12 bits per word. Parameters for encoding constant bandwidth (CBW) and proportional bandwidth (PBW) subcarrier multiplexes for PCM transmission are included.

  1. Error-backpropagation in temporally encoded networks of spiking neurons

    NARCIS (Netherlands)

    Bohte, S.M.; La Poutré, J.A.; Kok, J.N.

    2000-01-01

    For a network of spiking neurons that encodes information in the timing of individual spike-times, we derive a supervised learning rule, emph{SpikeProp, akin to traditional error-backpropagation and show how to overcome the discontinuities introduced by thresholding. With this algorithm, we demonstr

  2. Permutation-invariant codes encoding more than one qubit

    OpenAIRE

    Ouyang, Yingkai; Fitzsimons, Joseph

    2015-01-01

    A permutation-invariant code on m qubits is a subspace of the symmetric subspace of the m qubits. We derive permutation-invariant codes that can encode an increasing amount of quantum information while suppressing leading order spontaneous decay errors. To prove the result, we use elementary number theory with prior theory on permutation invariant codes and quantum error correction.

  3. Encoding, Memory, and Transcoding Deficits in Childhood Apraxia of Speech

    Science.gov (United States)

    Shriberg, Lawrence D.; Lohmeier, Heather L.; Strand, Edythe A.; Jakielski, Kathy J.

    2012-01-01

    A central question in Childhood Apraxia of Speech (CAS) is whether the core phenotype is limited to transcoding (planning/programming) deficits or if speakers with CAS also have deficits in auditory-perceptual "encoding" (representational) and/or "memory" (storage and retrieval of representations) processes. We addressed this and other questions…

  4. Permutation-invariant codes encoding more than one qubit

    Science.gov (United States)

    Ouyang, Yingkai; Fitzsimons, Joseph

    2016-04-01

    A permutation-invariant code on m qubits is a subspace of the symmetric subspace of the m qubits. We derive permutation-invariant codes that can encode an increasing amount of quantum information while suppressing leading-order spontaneous decay errors. To prove the result, we use elementary number theory with prior theory on permutation-invariant codes and quantum error correction.

  5. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    Science.gov (United States)

    Schnorr, Kirk; Kramer, Randall

    2016-04-05

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  6. Encoding Ability in Teacher-Student Communication Games.

    Science.gov (United States)

    Crossan, Donna; Olson, David R.

    A two-part experiment was conducted to determine if consistent, predictable differences exist in teacher encoding ability (composed of the ability to formulate messages containing the essential information, to anticipate information needs of the listener, and to modify or recode the message from listener feedback). Twenty-eight teacher-encoders…

  7. Intelligent encoding and economical communication in the visual stream.

    OpenAIRE

    Lorincz, Andras

    2004-01-01

    The theory of computational complexity is used to underpin a recent model of neocortical sensory processing. We argue that encoding into reconstruction networks is appealing for communicating agents using Hebbian learning and working on hard combinatorial problems, which are easy to verify. Computational definition of the concept of intelligence is provided. Simulations illustrate the idea.

  8. Optimization of encoding gradients for MR-ARFI.

    Science.gov (United States)

    Chen, Jing; Watkins, Ron; Pauly, Kim Butts

    2010-04-01

    MR acoustic radiation force imaging provides a promising method to monitor therapeutic ultrasound treatments. By measuring the displacement induced by the acoustic radiation force, MR acoustic radiation force imaging can locate the focal spot, without a significant temperature rise. In this work, the encoding gradient for MR acoustic radiation force imaging is optimized to achieve an enhanced accuracy and precision of the displacement measurement. By analyzing the sources of artifacts, bulk motion and eddy currents are shown to introduce errors to the measurement, and heavy diffusion-weighting is shown to result in noisy displacement maps. To eliminate these problems, a new encoding scheme is proposed, which utilizes a pair of bipolar gradients. Improved precision is achieved with robustness against bulk motion and background phase distortion, and improved accuracy is achieved with reduced diffusion-weighting and optimized encoding pulse width. The experiment result shows that the signal-to-noise ratio can be enhanced by more than 2-fold. These significant improvements are obtained at no cost of scan time or encoding sensitivity, enabling the detection of a displacement less than 0.l microm in a gel phantom with MR acoustic radiation force imaging. PMID:20373406

  9. How Is Knowledge Generated About Memory Encoding Strategy Effectiveness?

    OpenAIRE

    Hertzog, Christopher; Price, Jodi; Dunlosky, John

    2008-01-01

    This study evaluated how people learn about encoding strategy effectiveness in an associative memory task. Individuals studied two lists of paired associates under instructions to use either a normatively effective strategy (interactive imagery) or a normatively ineffective strategy (rote repetition) for each pair. Questionnaire ratings of imagery effectiveness increased and ratings of repetition effectiveness decreased after task experience, demonstrating new knowledge about strategy effecti...

  10. The ternary-encoded fuzzy-neural networks

    OpenAIRE

    Semenova, Olena; Semenov, Andriy; Koval, Kostyantyn; Galka, Andriy

    2012-01-01

    When combining fuzzy logic and neural networks it is possible to get a hybrid system that can process uncertain values and can be trained. Fuzzy logic elements can be regarded as fuzzy-neural networks. In order to present a set of fuzzy values the ternary encoding is used.

  11. New online program with encoder and memory buffer modules

    International Nuclear Information System (INIS)

    A new online program using a new data acquisition system consisting of encoder and memory buffer modules is developed for the meson spectroscopy experiment, E64, at the KEK proton synchrotron. The program has a feature of a high-speed and high-rate data acquisition. It is also simple, feasible and easily extensible. (author)

  12. Conventions and nomenclature for double diffusion encoding NMR and MRI

    DEFF Research Database (Denmark)

    Shemesh, Noam; Jespersen, Sune N; Alexander, Daniel C;

    2015-01-01

    , such as double diffusion encoding (DDE) NMR and MRI, may provide novel quantifiable metrics that are less easily inferred from conventional diffusion acquisitions. Despite the growing interest on the topic, the terminology for the pulse sequences, their parameters, and the metrics that can be derived...

  13. The Neural Regions Sustaining Episodic Encoding and Recognition of Objects

    Science.gov (United States)

    Hofer, Alex; Siedentopf, Christian M.; Ischebeck, Anja; Rettenbacher, Maria A.; Widschwendter, Christian G.; Verius, Michael; Golaszewski, Stefan M.; Koppelstaetter, Florian; Felber, Stephan; Wolfgang Fleischhacker, W.

    2007-01-01

    In this functional MRI experiment, encoding of objects was associated with activation in left ventrolateral prefrontal/insular and right dorsolateral prefrontal and fusiform regions as well as in the left putamen. By contrast, correct recognition of previously learned objects (R judgments) produced activation in left superior frontal, bilateral…

  14. Neural Substrates for Episodic Encoding and Recognition of Unfamiliar Faces

    Science.gov (United States)

    Hofer, Alex; Siedentopf, Christian M.; Ischebeck, Anja; Rettenbacher, Maria A.; Verius, Michael; Golaszewski, Stefan M.; Felber, Stephan; Fleischhacker, W. Wolfgang

    2007-01-01

    Functional MRI was used to investigate brain activation in healthy volunteers during encoding of unfamiliar faces as well as during correct recognition of newly learned faces (CR) compared to correct identification of distractor faces (CF), missed alarms (not recognizing previously presented faces, MA), and false alarms (incorrectly recognizing…

  15. The Arithmetic Tie Effect Is Mainly Encoding-based.

    Science.gov (United States)

    Blankenberger, Sven

    2001-01-01

    Examined two possible explanations for the arithmetic tie effect: faster encoding of tie problems versus faster access to arithmetic facts. Found that the tie effect vanished with heterogeneous addition problems, and for seven out of eight participants, the effect vanished with heterogeneous multiplication problems. Concludes that the tie effect…

  16. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Yu; Duan, Junxin; Tang, Lan; Wu, Wenping

    2016-06-14

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  17. Polypeptides having cellulolytic enhancing activity and polynucleotides encoding same

    Energy Technology Data Exchange (ETDEWEB)

    Schnorr, Kirk; Kramer, Randall

    2016-08-09

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  18. Polypeptides having cellulolytic enhancing activity and nucleic acids encoding same

    Energy Technology Data Exchange (ETDEWEB)

    Brown, Kimberly; Harris, Paul; Zaretsky, Elizabeth; Re, Edward; Vlasenko, Elena; McFarland, Keith; Lopez de Leon, Alfredo

    2016-08-09

    The present invention relates to isolated polypeptides having cellulolytic enhancing activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods for producing and using the polypeptides.

  19. Polypeptides having xylanase activity and polynucleotides encoding same

    Energy Technology Data Exchange (ETDEWEB)

    Lopez de Leon, Alfredo; Rey, Michael

    2016-05-31

    The present invention relates to isolated polypeptides having xylanase activity and isolated polynucleotides encoding the polypeptides. The invention also relates to nucleic acid constructs, vectors, and host cells comprising the polynucleotides as well as methods of producing and using the polypeptides.

  20. Multiplexed Sequence Encoding: A Framework for DNA Communication.

    Science.gov (United States)

    Zakeri, Bijan; Carr, Peter A; Lu, Timothy K

    2016-01-01

    Synthetic DNA has great propensity for efficiently and stably storing non-biological information. With DNA writing and reading technologies rapidly advancing, new applications for synthetic DNA are emerging in data storage and communication. Traditionally, DNA communication has focused on the encoding and transfer of complete sets of information. Here, we explore the use of DNA for the communication of short messages that are fragmented across multiple distinct DNA molecules. We identified three pivotal points in a communication-data encoding, data transfer & data extraction-and developed novel tools to enable communication via molecules of DNA. To address data encoding, we designed DNA-based individualized keyboards (iKeys) to convert plaintext into DNA, while reducing the occurrence of DNA homopolymers to improve synthesis and sequencing processes. To address data transfer, we implemented a secret-sharing system-Multiplexed Sequence Encoding (MuSE)-that conceals messages between multiple distinct DNA molecules, requiring a combination key to reveal messages. To address data extraction, we achieved the first instance of chromatogram patterning through multiplexed sequencing, thereby enabling a new method for data extraction. We envision these approaches will enable more widespread communication of information via DNA. PMID:27050646

  1. Neural Activity during Encoding Predicts False Memories Created by Misinformation

    Science.gov (United States)

    Okado, Yoko; Stark, Craig E. L.

    2005-01-01

    False memories are often demonstrated using the misinformation paradigm, in which a person's recollection of a witnessed event is altered after exposure to misinformation about the event. The neural basis of this phenomenon, however, remains unknown. The authors used fMRI to investigate encoding processes during the viewing of an event and…

  2. Encoding and decoding a telecommunication standard command code

    Science.gov (United States)

    Benjauthrit, B.; Truong, T. K.

    1977-01-01

    A simple encoder/decoder implementation scheme is described for the (63,56) BCH code which can be used to correct single errors and to detect any even-number of errors. The scheme is feasible for onboard-spacecraft implementation.

  3. Extraordinarily Adaptive Properties of the Genetically Encoded Amino Acids

    Science.gov (United States)

    Ilardo, Melissa; Meringer, Markus; Freeland, Stephen; Rasulev, Bakhtiyor; Cleaves, H. James, II

    2015-03-01

    Using novel advances in computational chemistry, we demonstrate that the set of 20 genetically encoded amino acids, used nearly universally to construct all coded terrestrial proteins, has been highly influenced by natural selection. We defined an adaptive set of amino acids as one whose members thoroughly cover relevant physico-chemical properties, or ``chemistry space.'' Using this metric, we compared the encoded amino acid alphabet to random sets of amino acids. These random sets were drawn from a computationally generated compound library containing 1913 alternative amino acids that lie within the molecular weight range of the encoded amino acids. Sets that cover chemistry space better than the genetically encoded alphabet are extremely rare and energetically costly. Further analysis of more adaptive sets reveals common features and anomalies, and we explore their implications for synthetic biology. We present these computations as evidence that the set of 20 amino acids found within the standard genetic code is the result of considerable natural selection. The amino acids used for constructing coded proteins may represent a largely global optimum, such that any aqueous biochemistry would use a very similar set.

  4. Neural Correlates of the Encoding of Multimodal Contextual Features

    Science.gov (United States)

    Gottlieb, Lauren J.; Wong, Jenny; de Chastelaine, Marianne; Rugg, Michael D.

    2012-01-01

    Functional magnetic resonance imaging (fMRI) was employed to identify neural regions engaged during the encoding of contextual features belonging to different modalities. Subjects studied objects that were presented to the left or right of fixation. Each object was paired with its name, spoken in either a male or a female voice. The test…

  5. Fast Packet Classification Using Multi-Dimensional Encoding

    Science.gov (United States)

    Huang, Chi Jia; Chen, Chien

    Internet routers need to classify incoming packets quickly into flows in order to support features such as Internet security, virtual private networks and Quality of Service (QoS). Packet classification uses information contained in the packet header, and a predefined rule table in the routers. Packet classification of multiple fields is generally a difficult problem. Hence, researchers have proposed various algorithms. This study proposes a multi-dimensional encoding method in which parameters such as the source IP address, destination IP address, source port, destination port and protocol type are placed in a multi-dimensional space. Similar to the previously best known algorithm, i.e., bitmap intersection, multi-dimensional encoding is based on the multi-dimensional range lookup approach, in which rules are divided into several multi-dimensional collision-free rule sets. These sets are then used to form the new coding vector to replace the bit vector of the bitmap intersection algorithm. The average memory storage of this encoding is Θ (L · N · log N) for each dimension, where L denotes the number of collision-free rule sets, and N represents the number of rules. The multi-dimensional encoding practically requires much less memory than bitmap intersection algorithm. Additionally, the computation needed for this encoding is as simple as bitmap intersection algorithm. The low memory requirement of the proposed scheme means that it not only decreases the cost of packet classification engine, but also increases the classification performance, since memory represents the performance bottleneck in the packet classification engine implementation using a network processor.

  6. MicroRNA-encoding long non-coding RNAs

    Directory of Open Access Journals (Sweden)

    Zhu Xiaopeng

    2008-05-01

    Full Text Available Abstract Background Recent analysis of the mouse transcriptional data has revealed the existence of ~34,000 messenger-like non-coding RNAs (ml-ncRNAs. Whereas the functional properties of these ml-ncRNAs are beginning to be unravelled, no functional information is available for the large majority of these transcripts. Results A few ml-ncRNA have been shown to have genomic loci that overlap with microRNA loci, leading us to suspect that a fraction of ml-ncRNA may encode microRNAs. We therefore developed an algorithm (PriMir for specifically detecting potential microRNA-encoding transcripts in the entire set of 34,030 mouse full-length ml-ncRNAs. In combination with mouse-rat sequence conservation, this algorithm detected 97 (80 of them were novel strong miRNA-encoding candidates, and for 52 of these we obtained experimental evidence for the existence of their corresponding mature microRNA by microarray and stem-loop RT-PCR. Sequence analysis of the microRNA-encoding RNAs revealed an internal motif, whose presence correlates strongly (R2 = 0.9, P-value = 2.2 × 10-16 with the occurrence of stem-loops with characteristics of known pre-miRNAs, indicating the presence of a larger number microRNA-encoding RNAs (from 300 up to 800 in the ml-ncRNAs population. Conclusion Our work highlights a unique group of ml-ncRNAs and offers clues to their functions.

  7. Identification and validation of human papillomavirus encoded microRNAs.

    Directory of Open Access Journals (Sweden)

    Kui Qian

    Full Text Available We report here identification and validation of the first papillomavirus encoded microRNAs expressed in human cervical lesions and cell lines. We established small RNA libraries from ten human papillomavirus associated cervical lesions including cancer and two human papillomavirus harboring cell lines. These libraries were sequenced using SOLiD 4 technology. We used the sequencing data to predict putative viral microRNAs and discovered nine putative papillomavirus encoded microRNAs. Validation was performed for five candidates, four of which were successfully validated by qPCR from cervical tissue samples and cell lines: two were encoded by HPV 16, one by HPV 38 and one by HPV 68. The expression of HPV 16 microRNAs was further confirmed by in situ hybridization, and colocalization with p16INK4A was established. Prediction of cellular target genes of HPV 16 encoded microRNAs suggests that they may play a role in cell cycle, immune functions, cell adhesion and migration, development, and cancer. Two putative viral target sites for the two validated HPV 16 miRNAs were mapped to the E5 gene, one in the E1 gene, two in the L1 gene and one in the LCR region. This is the first report to show that papillomaviruses encode their own microRNA species. Importantly, microRNAs were found in libraries established from human cervical disease and carcinoma cell lines, and their expression was confirmed in additional tissue samples. To our knowledge, this is also the first paper to use in situ hybridization to show the expression of a viral microRNA in human tissue.

  8. Electroencephalographic brain dynamics of memory encoding in emotionally arousing context

    Directory of Open Access Journals (Sweden)

    Carlos Enrique eUribe

    2011-06-01

    Full Text Available Emotional content/context enhances declarative memory through modulation of encoding and retrieval mechanisms. At encoding, neurophysiological data have consistently demonstrated the subsequent memory effect in theta and gamma oscillations. Yet, the existing studies were focused on the emotional content effect and let the emotional context effect unexplored. We hypothesized that theta and gamma oscillations show higher evoked/induced activity during the encoding of visual stimuli when delivered in an emotionally arousing context. Twenty-five healthy volunteers underwent evoked potentials recordings using a 21 scalp electrodes montage. They attended to an audiovisual test of emotional declarative memory being randomly assigned to either emotionally arousing or neutral context. Visual stimulus presentation was used as the time-locking event. Grand-averages of the evoked potentials and evoked spectral perturbations were calculated for each volunteer. Evoked potentials showed a higher negative deflection from 80 to 140 ms for the emotional condition. Such effect was observed over central, frontal and prefrontal locations bilaterally. Evoked theta power was higher in left parietal, central, frontal and prefrontal electrodes from -50 to 300 ms in the emotional condition. Evoked gamma power was higher in the emotional condition with a spatial distribution that overlapped at some points with the theta topography. The early theta power increase could be related to expectancy induced by auditory information processing that facilitates visual encoding in emotional contexts. Together, our results suggest that declarative memory enhancement for both emotional content and emotional context are supported by similar neural mechanisms at encoding, and offer new evidence about the brain processing of relevant environmental stimuli.

  9. Physical exercise during encoding improves vocabulary learning in young female adults

    OpenAIRE

    Schmidt-Kassow, Maren; Deusser, Marie; Thiel, Christian; Otterbein, Sascha; Montag, Christian; Reuter, Martin(Institute of Physics, University of Mainz, Staudingerweg 7, D-55099, Mainz, Germany); Banzer, Winfried; Kaiser, Jochen

    2013-01-01

    Acute physical activity has been repeatedly shown to improve various cognitive functions. However, there have been no investigations comparing the effects of exercise during verbal encoding versus exercise prior to encoding on long-term memory performance. In this current psychoneuroendocrinological study we aim to test whether light to moderate ergometric bicycling during vocabulary encoding enhances subsequent recall compared to encoding during physical rest and encoding after being physica...

  10. Cracking the Glycome Encoder: Signaling, Trafficking, and Glycosylation.

    Science.gov (United States)

    Bard, Frederic; Chia, Joanne

    2016-05-01

    The glycoproteome, the ensemble of glycans and their carrier proteins, plays major roles in multicellular life by regulating cell interactions with their environment. How information is encoded into the glycome, in other words how glycosylation is modulated in response to signals, remains largely unclear. Glycosylation enzymes operate predominantly in the endoplasmic reticulum (ER) and Golgi, a highly compartmentalized membrane-bound environment. Recent work indicates that this compartmentalization is plastic and tightly regulated. For instance, specific signals can induce the relocation of O-glycosylation enzymes, GALNTs, from the Golgi to the ER, resulting in significant upregulation of O-glycosylation initiation. We have named this re-compartmentation process the 'GALA pathway'. GALA illustrates how membrane trafficking in the secretory pathway can regulate protein glycosylation and thus encode information in the glycome. PMID:26832820

  11. Constrained optimization of gradient waveforms for generalized diffusion encoding.

    Science.gov (United States)

    Sjölund, Jens; Szczepankiewicz, Filip; Nilsson, Markus; Topgaard, Daniel; Westin, Carl-Fredrik; Knutsson, Hans

    2015-12-01

    Diffusion MRI is a useful probe of tissue microstructure. The conventional diffusion encoding sequence, the single pulsed field gradient, has recently been challenged as more general gradient waveforms have been introduced. Out of these, we focus on q-space trajectory imaging, which generalizes the scalar b-value to a tensor valued entity. To take full advantage of its capabilities, it is imperative to respect the constraints imposed by the hardware, while at the same time maximizing the diffusion encoding strength. We provide a tool that achieves this by solving a constrained optimization problem that accommodates constraints on maximum gradient amplitude, slew rate, coil heating and positioning of radio frequency pulses. The method's efficacy and flexibility is demonstrated both experimentally and by comparison with previous work on optimization of isotropic diffusion sequences. PMID:26583528

  12. A Note on Encodings of Phylogenetic Networks of Bounded Level

    CERN Document Server

    Gambette, Philippe

    2009-01-01

    Driven by the need for better models that allow one to shed light into the question how life's diversity has evolved, phylogenetic networks have now joined phylogenetic trees in the center of phylogenetics research. Like phylogenetic trees, such networks canonically induce collections of phylogenetic trees, clusters, and triplets, respectively. Thus it is not surprising that many network approaches aim to reconstruct a phylogenetic network from such collections. Related to the well-studied perfect phylogeny problem, the following question is of fundamental importance in this context: When does one of the above collections encode (i.e. uniquely describe) the network that induces it? In this note, we present a complete answer to this question for the special case of a level-1 (phylogenetic) network by characterizing those level-1 networks for which an encoding in terms of one (or equivalently all) of the above collections exists. Given that this type of network forms the first layer of the rich hierarchy of lev...

  13. Megaplasmids encode differing combinations of lantibiotics in Streptococcus salivarius.

    Science.gov (United States)

    Wescombe, Philip A; Burton, Jeremy P; Cadieux, Peter A; Klesse, Nikolai A; Hyink, Otto; Heng, Nicholas C K; Chilcott, Chris N; Reid, Gregor; Tagg, John R

    2006-10-01

    Streptococcus salivarius strains commonly produce bacteriocins as putative anti-competitor or signalling molecules. Here we report that bacteriocin production by the oral probiotic strain S. salivarius K12 is encoded by a large (ca. 190 kb) plasmid. Oral cavity transmission of the plasmid from strain K12 to a plasmid-negative variant of this bacterium was demonstrated in two subjects. Tests of additional S. salivarius strains showed large (up to ca. 220 kb) plasmids present in bacteriocin-producing isolates. Various combinations (up to 3 per plasmid) of loci encoding the known streptococcal lantibiotics salivaricin A, salivaricin B, streptin and SA-FF22 were localised to these plasmids. Since all bacteriocin-producing strains of S. salivarius tested to date appear to harbour plasmids, it appears that they may function as mobile repositories for bacteriocin loci, especially those of the lantibiotic class. PMID:16871420

  14. Optical-spectrum-encoded analog-to-digital converter

    Institute of Scientific and Technical Information of China (English)

    LIAO Xiao-jun; YANG Ya-pei

    2007-01-01

    A novel optical-spectrum-encoded (OSE) analog-to-digital converter (ADC) is proposed in this letter. To simply exemplify the conversion idea, a 5-bit device structure consisted of Fabry-Perot interferometers (FPI) is analyzed and numerically simulated. The dependence of peak-transmission wavelength on modulation voltage in an electro-optical FPI and the dependence of transmitted power on incident light wavelength in an FPI are discussed and utilized to implement OSEADC.A linearly tunable mode-locked laser, as a voltage-wavelength transformer and a sampler, and chirped grating FPIs, as an encoder array, can be used to obtain much greater sampling rate and bit-resolution.

  15. Novel selection methods for DNA-encoded chemical libraries

    Science.gov (United States)

    Chan, Alix I.; McGregor, Lynn M.; Liu, David R.

    2015-01-01

    Driven by the need for new compounds to serve as biological probes and leads for therapeutic development and the growing accessibility of DNA technologies including high-throughput sequencing, many academic and industrial groups have begun to use DNA-encoded chemical libraries as a source of bioactive small molecules. In this review, we describe the technologies that have enabled the selection of compounds with desired activities from these libraries. These methods exploit the sensitivity of in vitro selection coupled with DNA amplification to overcome some of the limitations and costs associated with conventional screening methods. In addition, we highlight newer techniques with the potential to be applied to the high-throughput evaluation of DNA-encoded chemical libraries. PMID:25723146

  16. Constrained optimization of gradient waveforms for generalized diffusion encoding

    Science.gov (United States)

    Sjölund, Jens; Szczepankiewicz, Filip; Nilsson, Markus; Topgaard, Daniel; Westin, Carl-Fredrik; Knutsson, Hans

    2015-12-01

    Diffusion MRI is a useful probe of tissue microstructure. The conventional diffusion encoding sequence, the single pulsed field gradient, has recently been challenged as more general gradient waveforms have been introduced. Out of these, we focus on q-space trajectory imaging, which generalizes the scalar b-value to a tensor valued entity. To take full advantage of its capabilities, it is imperative to respect the constraints imposed by the hardware, while at the same time maximizing the diffusion encoding strength. We provide a tool that achieves this by solving a constrained optimization problem that accommodates constraints on maximum gradient amplitude, slew rate, coil heating and positioning of radio frequency pulses. The method's efficacy and flexibility is demonstrated both experimentally and by comparison with previous work on optimization of isotropic diffusion sequences.

  17. Multiple genes encode the major surface glycoprotein of Pneumocystis carinii

    DEFF Research Database (Denmark)

    Kovacs, J A; Powell, F; Edman, J C;

    1993-01-01

    hydrophobic region at the carboxyl terminus. The presence of multiple related msg genes encoding the major surface glycoprotein of P. carinii suggests that antigenic variation is a possible mechanism for evading host defenses. Further characterization of this family of genes should allow the development of...... antigen is a good candidate for development as a vaccine to prevent or control P. carinii infection. We have cloned and sequenced seven related but unique genes encoding the major surface glycoprotein of rat P. carinii. Partial amino acid sequencing confirmed the identity of these genes. Based on Southern......The major surface antigen of Pneumocystis carinii, a life-threatening opportunistic pathogen in human immunodeficiency virus-infected patients, is an abundant glycoprotein that functions in host-organism interactions. A monoclonal antibody to this antigen is protective in animals, and thus this...

  18. Performance studies of a depth encoding multicrystal detector for PET

    International Nuclear Information System (INIS)

    We report the results of design studies for a multicrystal detector with the capacity to encode the Depth-Of-Interaction (DOI). These studies are based on a simulation that treats the interactions of γ- rays and tracts simulation protons in state-of-the-art position encoding PET detectors. The simulation was used to study the impact of a simple modification to the standard surface treatment of the EXACT HR PLUS block that induces a significant sensitivity of the photopeak pulse height upon DOI of 511keV γ-rays. The depth resolution achieved with the altered block as well as the impact of the modification on its energy and position resolutions are presented. The results show a depth resolution of 6 to 7 mm for the inner crystals of the modified block. This is achieved at the cost of 16% less position addressing accuracy. (author)

  19. Isolation and nucleotide sequence of the gene encoding human rhodopsin.

    OpenAIRE

    Nathans, J; Hogness, D S

    1984-01-01

    We have isolated and completely sequenced the gene encoding human rhodopsin. The coding region of the human rhodopsin gene is interrupted by four introns, which are located at positions analogous to those found in the previously characterized bovine rhodopsin gene. The amino acid sequence of human rhodopsin, deduced from the nucleotide sequence of its gene, is 348 residues long and is 93.4% homologous to that of bovine rhodopsin. Interestingly, those portions of the polypeptide chain predicte...

  20. Error-backpropagation in temporally encoded networks of spiking neurons

    OpenAIRE

    Bohte, Sander; La Poutré, Han; Kok, Joost

    2000-01-01

    For a network of spiking neurons that encodes information in the timing of individual spike-times, we derive a supervised learning rule, emph{SpikeProp, akin to traditional error-backpropagation and show how to overcome the discontinuities introduced by thresholding. With this algorithm, we demonstrate how networks of spiking neurons with biologically reasonable action potentials can perform complex non-linear classification in fast temporal coding just as well as rate-coded networks. We perf...

  1. Creativity within constraints: Encoding, production, and representation in Battlestar Galactica

    OpenAIRE

    Adams, Philippa Rush

    2015-01-01

    Using the lens of feminist production studies, I examine the television show Battlestar Galactica through interviews with show creators to explore the contexts of production. Writers, actors, and producers experience constraints on their creativity. Media producers encode meaning into the texts they create and form their own understandings of social issues and stories. I examine the day-to-day processes and constraints operating in the work lives of television creators as well as their politi...

  2. Rats answer an unexpected question after incidental encoding

    OpenAIRE

    Zhou, Wenyi; Hohmann, Andrea G.; Crysta, Jonathon D.

    2012-01-01

    A fundamental aspect of episodic memory is that retrieval of information can occur when encoding is incidental and memory assessment is unexpected [1–4]. These features are difficult to model in animals because behavioral training likely gives rise to well-learned expectations about the sequence of events. Thus, the possibility remains that animals may solve an episodic-memory test by using well-learned semantic rules without remembering the episode at memory assessment. Here we show that rat...

  3. Encoding the Maternal: Female benevolence in naked charity calendars

    OpenAIRE

    Turton-Turner, Pamela

    2015-01-01

    This paper explores if the contemporary visual phenomenon of nude fund-raising calendars (naked charity), reinforces historical ideals that benevolence is typically domestic and asexually maternal. It examines if naked charity resonates a conventional style of femininity in which a woman is located as culture's natural, maternal helpmeet. Is there an interrelationship between encoded maternal caring qualities ascribed to women in the history of art, and popular naked charity? A woman's presup...

  4. Quantum Key Distribution with Qubits Encoded in Qutrit

    OpenAIRE

    Kumar, R; Demkowicz-Dobrzanski, R.; Banaszek, K.

    2012-01-01

    We present a novel one-way quantum key distribution protocol based on 3-dimensional quantum state, a qutrit, that encodes two qubits in its 2-dimensional subspaces. The qubits hold the classical bit information that has to be shared between the legitimate users. Alice sends such a qutrit to Bob where he decodes one of the qubit and measures it along the random Pauli basis. This scheme has higher secure key rate at longer transmission distance than the standard BB84 protocol.

  5. SAT Encoding and CSP Reduction for Interconnected Alldiff Constraints

    Science.gov (United States)

    Lardeux, Frederic; Monfroy, Eric; Saubion, Frederic; Crawford, Broderick; Castro, Carlos

    Constraint satisfaction problems (CSP) or Boolean satisfiability problem (SAT) are two well known paradigm to model and solve combinatorial problems. Modeling and resolution of CSP is often strengthened by global constraints (e.g., Alldiff constraint). This paper highlights two different ways of handling specific structural information: a uniform propagation framework to handle (interleaved) Alldiff constraints with some CSP reduction rules; and a SAT encoding of these rules that preserves the reduction properties of CSP.

  6. Bacteriophage-encoded depolymerases: their diversity and biotechnological applications

    OpenAIRE

    Pires, Diana Priscila Penso; Oliveira, Hugo Alexandre Mendes; Melo, Luís D. R.; Sillankorva, Sanna; Azeredo, Joana

    2016-01-01

    Bacteriophages (phages), natural enemies of bacteria, can encode enzymes able to degrade polymeric substances. These substances can be found in the bacterial cell surface, such as polysaccharides, or are produced by bacteria when they are living in biofilm communities, the most common bacterial lifestyle. Consequently, phages with depolymerase activity have a facilitated access to the host receptors, by degrading the capsular polysaccharides, and are believed to have a better performance agai...

  7. Fault-tolerant mosaic encoding in knot-based cryptography

    OpenAIRE

    Marzuoli, Annalisa; Palumbo, Giandomenico

    2012-01-01

    The cryptographic protocol based on topological knot theory,recently proposed by the authors, is improved for what concerns the efficiency of the encoding of knot diagrams and its error robustness. The standard Dowker-Thistlethwaite code, based on the ordered assignment of two numbers to each crossing of a knot diagram and not unique for some classes of knots, is replaced by a system of eight prototiles (knot mosaics) which, once assembled according to a set of combinatorial rules, reproduces...

  8. Encoding of public records and procedures in electronic registries

    OpenAIRE

    Παπαθεοδώρου, Χρήστος; Προκοπιάδου, Γεωργία; Μοσχόπουλος, Διονύσης

    2004-01-01

    An electronic registry is the main mechanism for the official distribution of public records, which are created within the framework of administrative procedures and business transactions. The encoding of public records within a registry is realized according to a certain format to facilitate information management. However, these formats do not refer to semantics, which are considered essential for: a) the description of the administrative procedures, and b) efficient information retrieval. ...

  9. Optimizing Phonetic Encoding for Viennese Unit Selection Speech Synthesis

    OpenAIRE

    Pucher, Michael; Neubarth, Friedrich; Strom, Volker

    2010-01-01

    While developing lexical resources for a particular language variety (Viennese), we experimented with a set of 5 different phonetic encodings, termed phone sets, used for unit selection speech synthesis. We started with a very rich phone set based on phonological considerations and covering as much phonetic variability as possible, which was then reduced to smaller sets by applying transformation rules that map or merge phone symbols. The optimal trade-off was found measuring the phone error ...

  10. Power efficient Delta Sigma bitstream encoder/decoder

    OpenAIRE

    2009-01-01

    The thesis presents design and implementation of components for recoding of signals between binary PCM and a bitstream representation. The bitstream representation enables real time signal processing using a power efficient algorithm for time-domain cross-correlation. The greatest savings are made when the system is restricted to a low oversampling ratio (OSR). A fully digital Delta Sigma encoder is presented. The low OSR is the largest limiting factor in the system. Both simulations and ...

  11. Chaotically encoded particle swarm optimization algorithm and its applications

    International Nuclear Information System (INIS)

    This paper proposes a novel particle swarm optimization (PSO) algorithm, chaotically encoded particle swarm optimization algorithm (CENPSOA), based on the notion of chaos numbers that have been recently proposed for a novel meaning to numbers. In this paper, various chaos arithmetic and evaluation measures that can be used in CENPSOA have been described. Furthermore, CENPSOA has been designed to be effectively utilized in data mining applications.

  12. Multidimensional Waveform Encoding for Spaceborne Synthetic Aperture Radar

    OpenAIRE

    Krieger, Gerhard; Gebert, Nicolas; Moreira, Alberto

    2007-01-01

    This paper introduces the innovative concept of multidimensional waveform encoding for spaceborne synthetic aperture radar (SAR). The combination of this technique with digital beamforming on receive enables a new generation of SAR systems with improved performance and flexible imaging capabilities. Examples are high-resolution wide-swath radar imaging with compact antennas, enhanced sensitivity for applications like along-track interferometry and moving object indication, or the implementati...

  13. Multidimensional Waveform Encoding for Synthetic Aperture Radar Remote Sensing

    OpenAIRE

    Krieger, Gerhard; Gebert, Nicolas; Moreira, Alberto

    2007-01-01

    This paper introduces and analyses the innovative concept of multidimensional waveform encoding for spaceborne synthetic aperture radar (SAR). The combination of this technique with digital beamforming on receive enables a new class of highly performant SAR systems employing novel and highly flexible radar imaging modes. Examples are adaptive high-resolution wide-swath SAR imaging with compact antennas, enhanced parameter estimation sensitivity for applications like along...

  14. Encoding a physical qubit into a logical qubit

    CERN Document Server

    Zeng, B; Xu, Z; Sun, C P; You, L

    2004-01-01

    We propose two protocols to encode a physical qubit into a logical qubit relying on common types of qubit-qubit interactions in as simple forms as possible. We comment on its experimental implementation in several quantum computing architectures, e.g. with trapped atomic ion qubits, atomic qubits inside a high Q optical cavity, solid state Josephson junction qubits, and Bose-Einstein condensed atoms.

  15. A Generative Process for Sampling Contractive Auto-Encoders

    OpenAIRE

    Rifai, Salah; Bengio, Yoshua; Dauphin, Yann; Vincent, Pascal

    2012-01-01

    The contractive auto-encoder learns a representation of the input data that captures the local manifold structure around each data point, through the leading singular vectors of the Jacobian of the transformation from input to representation. The corresponding singular values specify how much local variation is plausible in directions associated with the corresponding singular vectors, while remaining in a high-density region of the input space. This paper proposes a procedure for generating ...

  16. Deep Denoising Auto-encoder for Statistical Speech Synthesis

    OpenAIRE

    Wu, Zhenzhou; Takaki, Shinji; Yamagishi, Junichi

    2015-01-01

    This paper proposes a deep denoising auto-encoder technique to extract better acoustic features for speech synthesis. The technique allows us to automatically extract low-dimensional features from high dimensional spectral features in a non-linear, data-driven, unsupervised way. We compared the new stochastic feature extractor with conventional mel-cepstral analysis in analysis-by-synthesis and text-to-speech experiments. Our results confirm that the proposed method increases the quality of s...

  17. Encoding of Sensory Prediction Errors in the Human Cerebellum

    OpenAIRE

    Schlerf, John; Richard B. Ivry; Diedrichsen, Jörn

    2012-01-01

    A central tenet of motor neuroscience is that the cerebellum learns from sensory prediction errors. Surprisingly, neuroimaging studies have not revealed definitive signatures of error processing in the cerebellum. Furthermore, neurophysiologic studies suggest an asymmetry, such that the cerebellum may encode errors arising from unexpected sensory events, but not errors reflecting the omission of expected stimuli. We conducted an imaging study to compare the cerebellar response to these two ty...

  18. Identification, Characterization, and Classification of Genes Encoding Perchlorate Reductase

    OpenAIRE

    Bender, Kelly S.; Shang, Ching; Chakraborty, Romy; Belchik, Sara M.; Coates, John D.; Achenbach, Laurie A.

    2005-01-01

    The reduction of perchlorate to chlorite, the first enzymatic step in the bacterial reduction of perchlorate, is catalyzed by perchlorate reductase. The genes encoding perchlorate reductase (pcrABCD) in two Dechloromonas species were characterized. Sequence analysis of the pcrAB gene products revealed similarity to α- and β-subunits of microbial nitrate reductase, selenate reductase, dimethyl sulfide dehydrogenase, ethylbenzene dehydrogenase, and chlorate reductase, all of which are type II m...

  19. Encoding Gender and Individual Information in the Mouse Vomeronasal Organ

    OpenAIRE

    He, Jie; Ma, Limei; Kim, Sangseong; Nakai, Junichi; Yu, C. Ron

    2008-01-01

    The mammalian vomeronasal organ detects complex chemical signals that convey information about gender, strain, and the social and reproductive status of an individual. How these signals are encoded is poorly understood. We developed transgenic mice expressing the calcium indicator G-CaMP2 and analyzed population responses of vomeronasal neurons to urine from individual animals. A substantial portion of cells was activated by either male or female urine, but only a small population of cells re...

  20. Analog Genetic Encoding for the Evolution of Circuits and Networks

    OpenAIRE

    Mattiussi, Claudio; Floreano, Dario

    2007-01-01

    This paper describes a new kind of genetic representation called analog genetic encoding (AGE). The representation is aimed at the evolutionary synthesis and reverse engineering of circuits and networks such as analog electronic circuits, neural networks, and genetic regulatory networks. AGE permits the simultaneous evolution of the topology and sizing of the networks. The establishment of the links between the devices that form the network is based on an implicit definition of the interactio...

  1. Exploring the borderline between procedural encoding and pragmatic inference

    OpenAIRE

    Unger, Dr. Christoph

    2009-01-01

    Exploring the borderline between procedural encoding and pragmatic inference Sperber & Wilson (1995) argue for a view of verbal communication as consisting of two in- teracting processes: linguistic coding-decoding process and pragmatic inference processes. This approach to verbal communication raises the question of where the borderline between coding and inference should be drawn. Wilson & Sperber (1993) discussed this question and pointed out that this borderlin...

  2. Neutron-encoded protein quantification by peptide carbamylation.

    Science.gov (United States)

    Ulbrich, Arne; Merrill, Anna E; Hebert, Alexander S; Westphall, Michael S; Keller, Mark P; Attie, Alan D; Coon, Joshua J

    2014-01-01

    We describe a chemical tag for duplex proteome quantification using neutron encoding (NeuCode). The method utilizes the straightforward, efficient, and inexpensive carbamylation reaction. We demonstrate the utility of NeuCode carbamylation by accurately measuring quantitative ratios from tagged yeast lysates mixed in known ratios and by applying this method to quantify differential protein expression in mice fed a either control or high-fat diet. PMID:24178922

  3. SEU hardened memory cells for a CCSDS Reed Solomon encoder

    International Nuclear Information System (INIS)

    This paper reports on design technique to harden CMOS memory circuits against Single Event Upset (SEU) in the space environment. The design technique provides a recovery mechanism which is independent of the shape of the upsetting event. A RAM cell and Flip Flop design are presented to demonstrate the method. The Flip Flop was used in the control circuitry for a Reed Solomon encoder designed for the Space Station and Explorer platforms

  4. Encoding audio motion: spatial impairment in early blind individuals

    OpenAIRE

    Finocchietti, Sara; Cappagli, Giulia; Gori, Monica

    2015-01-01

    The consequence of blindness on auditory spatial localization has been an interesting issue of research in the last decade providing mixed results. Enhanced auditory spatial skills in individuals with visual impairment have been reported by multiple studies, while some aspects of spatial hearing seem to be impaired in the absence of vision. In this study, the ability to encode the trajectory of a 2-dimensional sound motion, reproducing the complete movement, and reaching the correct end-point...

  5. A Herpesvirus Encoded Deubiquitinase Is a Novel Neuroinvasive Determinant

    OpenAIRE

    Lee, Joy I.; Sollars, Patricia J.; Baver, Scott B.; Gary E Pickard; Mindy Leelawong; Smith, Gregory A.

    2009-01-01

    The neuroinvasive property of several alpha-herpesviruses underlies an uncommon infectious process that includes the establishment of life-long latent infections in sensory neurons of the peripheral nervous system. Several herpesvirus proteins are required for replication and dissemination within the nervous system, indicating that exploiting the nervous system as a niche for productive infection requires a specialized set of functions encoded by the virus. Whether initial entry into the nerv...

  6. Digital shaft encoders for nuclear and conventional industrial applications

    International Nuclear Information System (INIS)

    Photoelectric incremental shaft encoder giving 100 pulses per revolution developed at the Bhabha Atomic Research Centre is described. Some of its applications for position measurement in reactors and industry are discussed. They are for : (1) control rod position display in PURNIMA reactor, (2) X-ray diffractometer in CIRUS, (3) level measurement of liquid in PURNIMA II, (4) digital display of ram B in fuelling machine (5) position feedback device in numerically controlled drilling machine and (6) a tachometer. (M.G.B.)

  7. Optimal Encoding of Data in Data Transmission Channels

    OpenAIRE

    Silviu Draghici; Cornelia Anghel Drugarin; Chioncel Cristian Paul

    2013-01-01

    This paper aims to present the methods of achieving an optimal encoding in the data communication channels. After a short description of the communication channel and of the data communication channel types, follow briefly a few notions of the data channel enthropy, information, transinformation, with their properties, definitions and mathematical relations connecting them. Chapter 2 presents the concept of optimal code, following a detailed description (using two suggestive examples) of the ...

  8. Elemental gesture dynamics are encoded by song premotor cortical neurons

    OpenAIRE

    Amador, Ana; Perl, Yonatan Sanz; Mindlin, Gabriel; Margoliash, Daniel

    2013-01-01

    Quantitative biomechanical models can identify control parameters used during movements, and movement parameters encoded by premotor neurons. We fit a mathematical dynamical systems model including subsyringeal pressure, syringeal biomechanics, and upper vocal tract filtering to the songs of zebra finches. This reduced the dimensionality of singing dynamics, described as trajectories in pressure-tension space (motor “gestures”). We assessed model performance by characterizing the auditory res...

  9. Wavelength encoding technique for particle analyses in hematology analyzer

    Science.gov (United States)

    Rongeat, Nelly; Brunel, Patrick; Gineys, Jean-Philippe; Cremien, Didier; Couderc, Vincent; Nérin, Philippe

    2011-07-01

    The aim of this study is to combine multiple excitation wavelengths in order to improve accuracy of fluorescence characterization of labeled cells. The experimental demonstration is realized with a hematology analyzer based on flow cytometry and a CW laser source emitting two visible wavelengths. A given optical encoding associated to each wavelength allows fluorescence identification coming from specific fluorochromes and avoiding the use of noisy compensation method.

  10. Circulant temporal encoding for video retrieval and temporal alignment

    OpenAIRE

    Douze, Matthijs; Revaud, Jérôme; Verbeek, Jakob; Jégou, Hervé; Schmid, Cordelia

    2015-01-01

    International audience We address the problem of specific video event retrieval. Given a query video of a specific event, e.g., a concert of Madonna, the goal is to retrieve other videos of the same event that temporally overlap with the query. Our approach encodes the frame descriptors of a video to jointly represent their appearance and temporal order. It exploits the properties of circulant matrices to efficiently compare the videos in the frequency domain. This offers a significant gai...

  11. Copyright Protection of Color Imaging Using Robust-Encoded Watermarking

    Directory of Open Access Journals (Sweden)

    M. Cedillo-Hernandez

    2015-04-01

    Full Text Available In this paper we present a robust-encoded watermarking method applied to color images for copyright protection, which presents robustness against several geometric and signal processing distortions. Trade-off between payload, robustness and imperceptibility is a very important aspect which has to be considered when a watermark algorithm is designed. In our proposed scheme, previously to be embedded into the image, the watermark signal is encoded using a convolutional encoder, which can perform forward error correction achieving better robustness performance. Then, the embedding process is carried out through the discrete cosine transform domain (DCT of an image using the image normalization technique to accomplish robustness against geometric and signal processing distortions. The embedded watermark coded bits are extracted and decoded using the Viterbi algorithm. In order to determine the presence or absence of the watermark into the image we compute the bit error rate (BER between the recovered and the original watermark data sequence. The quality of the watermarked image is measured using the well-known indices: Peak Signal to Noise Ratio (PSNR, Visual Information Fidelity (VIF and Structural Similarity Index (SSIM. The color difference between the watermarked and original images is obtained by using the Normalized Color Difference (NCD measure. The experimental results show that the proposed method provides good performance in terms of imperceptibility and robustness. The comparison among the proposed and previously reported methods based on different techniques is also provided.

  12. Bus Encoder for Crosstalk Avoidance in RLC Modeled Interconnects

    Directory of Open Access Journals (Sweden)

    S.K.Verma

    2012-04-01

    Full Text Available The performance factors such as propagation delay, power dissipation and cross talk in RC modelled interconnects are major design issues for the System on-chip (SoC designs in current Deep Sub micron (DSM era. The crosstalk effect is a consequence of coupling and switching activities that is encountered when there is a transition as compared to previous state of wire and or when there are transitions in adjacent wires. Therefore, minimization or elimination of switching and coupling activities is crucial in enhancing the performance of SoC designs. There are several methods for the reduction of power dissipation, crosstalk and delay. The encoding method is most effective and popular method for enhancing the behaviour of on-chip buses. This paper proposes encoding scheme to achieve overall reduction in transitions. The reduction in transition improves the performance in terms of reduced power dissipation, coupling activity and delay in on-chip buses. This encoding method is implemented using VHDL. The result evidently demonstrates reduction in transitions which consequently improves the overall performance of on-chip buses.

  13. An optimized hybrid encode based compression algorithm for hyperspectral image

    Science.gov (United States)

    Wang, Cheng; Miao, Zhuang; Feng, Weiyi; He, Weiji; Chen, Qian; Gu, Guohua

    2013-12-01

    Compression is a kernel procedure in hyperspectral image processing due to its massive data which will bring great difficulty in date storage and transmission. In this paper, a novel hyperspectral compression algorithm based on hybrid encoding which combines with the methods of the band optimized grouping and the wavelet transform is proposed. Given the characteristic of correlation coefficients between adjacent spectral bands, an optimized band grouping and reference frame selection method is first utilized to group bands adaptively. Then according to the band number of each group, the redundancy in the spatial and spectral domain is removed through the spatial domain entropy coding and the minimum residual based linear prediction method. Thus, embedded code streams are obtained by encoding the residual images using the improved embedded zerotree wavelet based SPIHT encode method. In the experments, hyperspectral images collected by the Airborne Visible/ Infrared Imaging Spectrometer (AVIRIS) were used to validate the performance of the proposed algorithm. The results show that the proposed approach achieves a good performance in reconstructed image quality and computation complexity.The average peak signal to noise ratio (PSNR) is increased by 0.21~0.81dB compared with other off-the-shelf algorithms under the same compression ratio.

  14. Towards Encoding Background Knowledge with Temporal Extent into Neural Networks

    Science.gov (United States)

    Anh, Han; Marques, Nuno C.

    Neuro-symbolic integration merges background knowledge and neural networks to provide a more effective learning system. It uses the Core Method as a means to encode rules. However, this method has several drawbacks in dealing with rules that have temporal extent. First, it demands some interface with the world which buffers the input patterns so they can be represented all at once. This imposes a rigid limit on the duration of patterns and further suggests that all input vectors be the same length. These are troublesome in domains where one would like comparable representations for patterns that are of variable length (e.g. language). Second, it does not allow dynamic insertion of rules conveniently. Finally and also most seriously, it cannot encode rules having preconditions satisfied at non-deterministic time points - an important class of rules. This paper presents novel methods for encoding such rules, thereby improves and extends the power of the state-of-the-art neuro-symbolic integration.

  15. Holistic random encoding for imaging through multimode fibers

    CERN Document Server

    Jang, Hwanchol; Chung, Euiheon; Choi, Wonshik; Lee, Heung-No

    2015-01-01

    The input numerical aperture (NA) of multimode fiber (MMF) can be effectively increased by placing turbid media at the input end of the MMF. This provides the potential for high-resolution imaging through the MMF. While the input NA is increased, the number of propagation modes in the MMF and hence the output NA remains the same. This makes the image reconstruction process underdetermined and may limit the quality of the image reconstruction. In this paper, we aim to improve the signal to noise ratio (SNR) of the image reconstruction in imaging through MMF. We notice that turbid media placed in the input of the MMF transforms the incoming waves into a better format for information transmission and information extraction. We call this transformation as holistic random (HR) encoding of turbid media. By exploiting the HR encoding, we make a considerable improvement on the SNR of the image reconstruction. For efficient utilization of the HR encoding, we employ sparse representation (SR), a relatively new signal r...

  16. New Complexity Scalable MPEG Encoding Techniques for Mobile Applications

    Directory of Open Access Journals (Sweden)

    Stephan Mietens

    2004-03-01

    Full Text Available Complexity scalability offers the advantage of one-time design of video applications for a large product family, including mobile devices, without the need of redesigning the applications on the algorithmic level to meet the requirements of the different products. In this paper, we present complexity scalable MPEG encoding having core modules with modifications for scalability. The interdependencies of the scalable modules and the system performance are evaluated. Experimental results show scalability giving a smooth change in complexity and corresponding video quality. Scalability is basically achieved by varying the number of computed DCT coefficients and the number of evaluated motion vectors but other modules are designed such they scale with the previous parameters. In the experiments using the “Stefan” sequence, the elapsed execution time of the scalable encoder, reflecting the computational complexity, can be gradually reduced to roughly 50% of its original execution time. The video quality scales between 20 dB and 48 dB PSNR with unity quantizer setting, and between 21.5 dB and 38.5 dB PSNR for different sequences targeting 1500 kbps. The implemented encoder and the scalability techniques can be successfully applied in mobile systems based on MPEG video compression.

  17. Muscle synergies evoked by microstimulation are preferentially encoded during behavior

    Directory of Open Access Journals (Sweden)

    Simon Alexander Overduin

    2014-03-01

    Full Text Available Electrical microstimulation studies provide some of the most direct evidence for the neural representation of muscle synergies. These synergies, i.e. coordinated activations of groups of muscles, have been proposed as building blocks for the construction of motor behaviors by the nervous system. Intraspinal or intracortical microstimulation has been shown to evoke muscle patterns that can be resolved into a small set of synergies similar to those seen in natural behavior. However, questions remain about the validity of microstimulation as a probe of neural function, particularly given the relatively long trains of supratheshold stimuli used in these studies. Here, we examined whether muscle synergies evoked during intracortical microstimulation in two rhesus macaques were similarly encoded by nearby motor cortical units during a purely voluntary behavior involving object reach, grasp, and carry movements. At each microstimulation site we identified the synergy most strongly evoked among those extracted from muscle patterns evoked over all microstimulation sites. For each cortical unit recorded at the same microstimulation site, we then identified the synergy most strongly encoded among those extracted from muscle patterns recorded during the voluntary behavior. We found that the synergy most strongly evoked at an intracortical microstimulation site matched the synergy most strongly encoded by proximal units more often than expected by chance. These results suggest a common neural substrate for microstimulation-evoked motor responses and for the generation of muscle patterns during natural behaviors.

  18. Face and object encoding under perceptual load: ERP evidence.

    Science.gov (United States)

    Neumann, Markus F; Mohamed, Tarik N; Schweinberger, Stefan R

    2011-02-14

    According to the perceptual load theory, processing of a task-irrelevant distractor is abolished when attentional resources are fully consumed by task-relevant material. As an exception, however, famous faces have been shown to elicit repetition modulations in event-related potentials - an N250r - despite high load at initial presentation, suggesting preserved face-encoding. Here, we recorded N250r repetition modulations by unfamiliar faces, hands, and houses, and tested face specificity of preserved encoding under high load. In an immediate (S1-S2) repetition priming paradigm, participants performed a letter identification task on S1 by indicating whether an "X" vs. "N" was among 6 different (high load condition) or 6 identical (low load condition) letters. Letter strings were superimposed on distractor faces, hands, or houses. Subsequent S2 probes were either identical repetitions of S1 distractors, non-repeated exemplars from the same category, or infrequent butterflies, to which participants responded. Independent of attentional load at S1, an occipito-temporal N250r was found for unfamiliar faces. In contrast, no repetition-related neural modulation emerged for houses or hands. This strongly suggests that a putative face-selective attention module supports encoding under high load, and that similar mechanisms are unavailable for other natural or artificial objects. PMID:21044688

  19. Distinctiveness and encoding effects in online sentence comprehension.

    Science.gov (United States)

    Hofmeister, Philip; Vasishth, Shravan

    2014-01-01

    In explicit memory recall and recognition tasks, elaboration and contextual isolation both facilitate memory performance. Here, we investigate these effects in the context of sentence processing: targets for retrieval during online sentence processing of English object relative clause constructions differ in the amount of elaboration associated with the target noun phrase, or the homogeneity of superficial features (text color). Experiment 1 shows that greater elaboration for targets during the encoding phase reduces reading times at retrieval sites, but elaboration of non-targets has considerably weaker effects. Experiment 2 illustrates that processing isolated superficial features of target noun phrases-here, a green word in a sentence with words colored white-does not lead to enhanced memory performance, despite triggering longer encoding times. These results are interpreted in the light of the memory models of Nairne, 1990, 2001, 2006, which state that encoding remnants contribute to the set of retrieval cues that provide the basis for similarity-based interference effects. PMID:25566105

  20. Identification of a Novel UTY‐Encoded Minor Histocompatibility Antigen

    DEFF Research Database (Denmark)

    Mortensen, B. K.; Rasmussen, A. H.; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Braendstrup, P.; Harndahl, Mikkel Nors; Rasmussen, M.; Buus, S.; Stryhn, A.; Vindeløv, Lars

    2012-01-01

    Minor histocompatibility antigens (mHags) encoded by the Y‐chromosome (H‐Y‐mHags) are known to play a pivotal role in allogeneic haematopoietic cell transplantation (HCT) involving female donors and male recipients. We present a new H‐Y‐mHag, YYNAFHWAI (UTY139–147), encoded by the UTY gene and...... obtained post‐HCT from male recipients of female donor grafts. In one of these recipients, a CD8+ T cell response was observed against a peptide stretch encoded by the UTY gene. Another bioinformatics tool, HLArestrictor, was used to identify the optimal peptide and HLA‐restriction element. Using peptide...... degranulation (CD107a). In contrast, no responses were seen when the T cells were stimulated with patient tumour cells alone. CD8+ T cells specific for this new H‐Y‐mHag were found in three of five HLA‐A*24:02‐positive male recipients of female donor HCT grafts available for this study....

  1. Transmit Array Spatial Encoding (TRASE) using broadband WURST pulses for RF spatial encoding in inhomogeneous B0 fields

    Science.gov (United States)

    Stockmann, Jason P.; Cooley, Clarissa Z.; Guerin, Bastien; Rosen, Matthew S.; Wald, Lawrence L.

    2016-07-01

    Transmit Array Spatial Encoding (TRASE) is a promising new MR encoding method that uses transmit RF (B1+) phase gradients over the field-of-view to perform Fourier spatial encoding. Acquisitions use a spin echo train in which the transmit coil phase ramp is modulated to jump from one k-space point to the next. This work extends the capability of TRASE by using swept radiofrequency (RF) pulses and a quadratic phase removal method to enable TRASE where it is arguably most needed: portable imaging systems with inhomogeneous B0 fields. The approach is particularly well-suited for portable MR scanners where (a) inhomogeneous B0 fields are a byproduct of lightweight magnet design, (b) heavy, high power-consumption gradient coil systems are a limitation to siting the system in non-conventional locations and (c) synergy with the use of spin echo trains is required to overcome intra-voxel dephasing (short T2∗) in the inhomogeneous field. TRASE does not use a modulation of the B0 field to encode, but it does suffer from secondary effects of the inhomogeneous field. Severe artifacts arise in TRASE images due to off-resonance effects when the RF pulse does not cover the full bandwidth of spin resonances in the imaging FOV. Thus, for highly inhomogeneous B0 fields, the peak RF power needed for high-bandwidth refocusing hard pulses becomes very expensive, in addition to requiring RF coils that can withstand thousands of volts. In this work, we use swept WURST RF pulse echo trains to achieve TRASE imaging in a highly inhomogeneous magnetic field (ΔB0/B0 ∼ 0.33% over the sample). By accurately exciting and refocusing the full bandwidth of spins, the WURST pulses eliminate artifacts caused by the limited bandwidth of the hard pulses used in previous realizations of TRASE imaging. We introduce a correction scheme to remove the unwanted quadratic phase modulation caused by the swept pulses. Also, a phase alternation scheme is employed to mitigate artifacts caused by mixture of

  2. New recombinant bacterium comprises a heterologous gene encoding glycerol dehydrogenase and/or an up-regulated native gene encoding glycerol dehydrogenase, useful for producing ethanol

    DEFF Research Database (Denmark)

    2010-01-01

    TECHNOLOGY FOCUS - BIOTECHNOLOGY - Preparation (claimed): Producing recombinant bacterium having enhanced ethanol production characteristics when cultivated in growth medium comprising glycerol comprises: (a) transforming a parental bacterium by (i) the insertion of a heterologous gene encoding...... glycerol dehydrogenase; and/or (ii) up-regulating a native gene encoding glycerol dehydrogenase; and (b) obtaining the recombinant bacterium. Preferred Bacterium: In the recombinant bacterium above, the inserted heterologous gene and/or the up-regulated native gene is encoding a glycerol dehydrogenase...... dehydrogenase encoding region of the bacterium, or is inserted into a phosphotransacetylase encoding region of the bacterium, or is inserted into an acetate kinase encoding region of the bacterium. It is operably linked to an inducible, a regulated or a constitutive promoter. The up-regulated glycerol...

  3. Impact of a Computer System and the Encoding Staff Organization on the Encoding Stays and on Health Institution Financial Production in France.

    Science.gov (United States)

    Sarazin, Marianne; El Merini, Amine; Staccini, Pascal

    2016-01-01

    In France, medicalization of information systems program (PMSI) is an essential tool for the management planning and funding of health. The performance of encoding data inherent to hospital stays has become a major challenge for health institutions. Some studies have highlighted the impact of organizations set up on encoding quality and financial production. The aim of this study is to evaluate a computerized information system and new staff organization impact for treatment of the encoded information. PMID:27577332

  4. Polymeric Optical Code-Division Multiple-Access (CDMA) Encoder and Decoder Modules

    OpenAIRE

    Chen, Ray T.; Xuejun Lu

    2011-01-01

    We propose a low cost polymeric optical waveguides-based optical CDMA encoder and decoder modules. The structures of the optical CDMA encoder and decoder modules are presented. The performance of the optical CDMA encoder and decoder modules is simulated using 10-chip binary phase-shift keying (BPSK) coding schemes. The optical CDMA encoder and decoder modules can effectively transmit and recover optical CDMA data streams. The SNR of the received signal is analyzed and determined to be primari...

  5. Encoding of temporal intervals in the rat hindlimb sensorimotor cortex

    Directory of Open Access Journals (Sweden)

    Eric Bean Knudsen

    2012-09-01

    Full Text Available The gradual buildup of neural activity over experimentally imposed delay periods, termed climbing activity, is well documented and is a potential mechanism by which interval time is encoded by distributed cortico-thalamico-striatal networks in the brain. Additionally, when multiple delay periods are incorporated, this activity has been shown to scale its rate of climbing proportional to the delay period. However, it remains unclear whether these patterns of activity occur within areas of motor cortex dedicated to hindlimb movement. Moreover, the effects of behavioral training (e.g. motor tasks under different reward conditions but with similar behavioral output are not well addressed. To address this, we recorded activity from the hindlimb sensorimotor cortex (HLSMC of two groups of rats performing a skilled hindlimb press task. In one group, rats were trained only to a make a valid press within a finite window after cue presentation for reward (non-interval trained, nIT; n=5, while rats in the second group were given duration-specific cues in which they had to make presses of either short or long duration to receive reward (interval trained, IT; n=6. Using PETH analyses, we show that cells recorded from both groups showed climbing activity during the task in similar proportions (35% IT and 47% nIT, however only climbing activity from IT rats was temporally scaled to press duration. Furthermore, using single trial decoding techniques (Wiener filter, we show that press duration can be inferred using climbing activity from IT animals (R=0.61 significantly better than nIT animals (R=0.507, p<0.01, suggesting IT animals encode press duration through temporally scaled climbing activity. Thus, if temporal intervals are behaviorally relevant then the activity of climbing neurons is temporally scaled to encode the passage of time.

  6. Phase Encoding of Shots in Pre-Stack Seismic Migration

    Energy Technology Data Exchange (ETDEWEB)

    GHIGLIA, DENNIS C.; MORTON, SCOTT A.; OBER, CURTIS C; ROMERO, LOUIS

    1999-09-02

    Frequency-domain shot-record migration can produce higher quality images than Kirchhoff migration but typically at a greater cost. The computational cost of shot-record migration is the product of the number of shots in the survey and the expense of each individual migration. Many attempts to reduce this cost have focused on the speed of the individual migrations, trying to achieve a better trade-off between accuracy and speed. Another approach is to reduce the number of migrations. We investigate the simultaneous migration of shot records using frequency-domain shot-record migration algorithms. The difficulty with this approach is the production of so-called cross terms between unrelated shot and receiver wavefields, which generate unwanted artifacts or noise in the final image. To reduce these artifacts and obtain an image comparable in quality to the single-shot-per-migration result, we have introduced a process called phase encoding which shifts or disperses these cross terms. The process of phase encoding thus allows one to trade signal-to-noise ratio for the speed of migrating the entire survey. Several encoding functions and two application strategies have been tested. The first strategy, combining multiple shots per migration and using each shot only once, provides a reduction in computation directly related to the number of shots combined. The second strategy, performing multiple migrations of all the shots in the survey, provides a means to reduce the cross-term noise through stacking the resulting images. The additional noise in both strategies may be tolerated if it is no stronger than the inherent seismic noise in the migrated image, and if the final image is achieved with less cost.

  7. Multi-DOF Incremental Optical Encoder with Laser Wavelength Compensation

    Directory of Open Access Journals (Sweden)

    Cha'o-Kuang Chen

    2013-09-01

    Full Text Available This study used a reflective diffraction grating as the medium to develop a multi-DOF incremental optical encoder for motion stage. The optical encoder can measure three angular displacements, roll, yaw and pitch of the motion stage simultaneously, as well as the horizontal straightness and linear displacement, summed to five DOF errors of motion stage by only using the positive and negative first-order diffracted light. The grating diffraction theory, Doppler effect, and optical interference technique were used. Two quadrant photodetectors were used to measure the changes in three-dimensional space of diffraction direction of diffracted light, in order to construct a multi-DOF incremental optical encoder. Considering the working stability of a laser diode and preventing the influence of the zeroth-order diffracted light returning to the laser diode, an additional optical isolation system was designed and a wavelength variation monitoring module was created. The compensation for the light source wavelength variation could be 0.001 nm. The multi-DOF verification results showed that the roll error is ±0.7/60 arcsec, the standard deviation is 0.025 arcsec; the yaw error is ±0.7/30 arcsec, the standard deviation is 0.05 arcsec; the pitch error is ±0.8/90 arcsec, the standard deviation is 0.18 arcsec, the horizontal straightness error is ±0.5/250 μm, the standard deviation is 0.05 μm and the linear displacement error is ±1/20000 μm, the standard deviation is 12 nm.

  8. Optical Shaft-Angle Encoder For Helicopter Rotor

    Science.gov (United States)

    Golub, Robert A.; Fitzpatrick, Fred; Dennis, Dale V.; Taylor, Bryant D.

    1993-01-01

    Angular position of helicopter rotor blade determined precisely. Accomplished by use of optical shaft-angle encoder called "256 Ring" on rotor swashplate. Each 360 degree rotation of helicopter main rotor broken down into 256 reflective segments. As rotor rotates, beam of light reflected in turn from each segment into optoelectronic system. One of 256 segments reflects larger pulse than others do. Position of rotor determined by counting number of pulses after this reference pulse. While swashplate mounting requirements unique to each type of helicopter, concept applicable to all types of rotorcraft.

  9. Double random-phase encoding in the Fresnel domain.

    Science.gov (United States)

    Situ, Guohai; Zhang, Jingjuan

    2004-07-15

    A lensless optical security system based on double random-phase encoding in the Fresnel domain is proposed. This technique can encrypt a primary image to random noise by use of two statistically independent random-phase masks in the input and transform planes, respectively. In this system the positions of the significant planes and the operation wavelength, as well as the phase codes, are used as keys to encrypt and recover the primary image. Therefore higher security is achieved. The sensitivity of the decrypted image to shifting along the propagation direction and to the wavelength are also investigated. PMID:15309826

  10. Solving Open Job-Shop Scheduling Problems by SAT Encoding

    Science.gov (United States)

    Koshimura, Miyuki; Nabeshima, Hidetomo; Fujita, Hiroshi; Hasegawa, Ryuzo

    This paper tries to solve open Job-Shop Scheduling Problems (JSSP) by translating them into Boolean Satisfiability Testing Problems (SAT). The encoding method is essentially the same as the one proposed by Crawford and Baker. The open problems are ABZ8, ABZ9, YN1, YN2, YN3, and YN4. We proved that the best known upper bounds 678 of ABZ9 and 884 of YN1 are indeed optimal. We also improved the upper bound of YN2 and lower bounds of ABZ8, YN2, YN3 and YN4.

  11. Double random phase encoding using phase reservation and compression

    Science.gov (United States)

    Chen, Wen; Chen, Xudong

    2014-02-01

    In recent years, various studies have been conducted to illustrate the vulnerability of double random phase encoding (DRPE). In this paper, we propose a novel method via phase reservation and compression to enhance DRPE security. Only a compressed phase distribution is available in the CCD plane, and the amplitude component is not available or requested for optical decryption. Since only noise-like distributions can be obtained by using the correct security keys during optical decryption, a nonlinear correlation algorithm is further applied for authenticating the decrypted image. It is demonstrated that valid conditions for attack algorithms are broken and high security can be achieved for the DRPE system.

  12. AN EFFICIENT FAST ENCODING ALGORITHM FOR VECTOR QUANTIZATION

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    A fast encoding algorithm was presented which made full use of two characteristics of a vector, its sum and variance. In this paper, a vector was separated into two subvectors, one is the first half of the coordinates and the other contains the remaining coordinates. Three inequalities based on the characteristics of the sums and variances of a vector and its two subvectors were introduced to reject those codewords which are impossible to be the nearest codeword. The simulation results show that the proposed algorithm is faster than the improved equal-average eaual-variance nearest neighbor search (EENNS) algorithm.

  13. Structure and Function of a Chlorella Virus Encoded Glycosyltransferase

    OpenAIRE

    Zhang, Ying; Xiang, Ye; Van Etten, James L.; Rossmann, Michael G.

    2007-01-01

    Paramecium bursaria chlorella virus-1 encodes at least 5 putative glycosyltransferases that are probably involved in the synthesis of the glycan components of the viral major capsid protein. The 1.6 Å crystal structure of one of these glycosyltransferases (A64R) has a mixed α/β fold containing a central, six-stranded β-sheet flanked by α-helices. Crystal structures of A64R, complexed with UDP, CMP, or GDP, established that only UDP bound to A64R in the presence of Mn2+, consistent with its hi...

  14. Auto-JacoBin: Auto-encoder Jacobian Binary Hashing

    OpenAIRE

    Fu, Xiping; McCane, Brendan; Mills, Steven; Albert, Michael; Szymanski, Lech

    2016-01-01

    Binary codes can be used to speed up nearest neighbor search tasks in large scale data sets as they are efficient for both storage and retrieval. In this paper, we propose a robust auto-encoder model that preserves the geometric relationships of high-dimensional data sets in Hamming space. This is done by considering a noise-removing function in a region surrounding the manifold where the training data points lie. This function is defined with the property that it projects the data points nea...

  15. Binary Image Data Hiding Using Matrix Encoding Technique in Sensors

    OpenAIRE

    Phan Trung Huy; Cheonshik Kim

    2013-01-01

    It is very important to protect the copyright of digital images in wireless transmission, because people often use a smart phone in their daily life. Traditional security schemes are computationally expensive, and they introduce overhead, which shortens the life of the image sensors. In this paper, we present an Improved Matrix Encoding (IME) scheme for hiding data into a two-color binary image. Our proposed scheme improved the CPT scheme. In the CPT scheme, each block F of q=m×n pixel of G i...

  16. Direct Pathogenic Effects of HERV-encoded Proteins

    DEFF Research Database (Denmark)

    Hansen, Dorte Tranberg; Møller-Larsen, Anné; Petersen, Thor; Petersen, Eva Lykke; Christensen, Tove

    Background: Multiple sclerosis (MS) is a demyelinating, inflammatory disease of the central nervous system (CNS). MS is mediated by the immune system but the etiology of the disease remains unknown. Retroviral envelope (Env) proteins, encoded by human endogenous retroviruses (HERVs), are expressed...... optimized for the detection of expression of HERV-antigens on cells. Results: Preliminary results will be available in 2014. Perspectives: Results will contribute new knowledge of MS pathogenesis and the possible involvement of HERVs herein. A more comprehensive understanding of HERVs in general will also...

  17. Dynamical Encoding by Networks of Competing Neuron Groups: Winnerless Competition

    International Nuclear Information System (INIS)

    Following studies of olfactory processing in insects and fish, we investigate neural networks whose dynamics in phase space is represented by orbits near the heteroclinic connections between saddle regions (fixed points or limit cycles). These networks encode input information as trajectories along the heteroclinic connections. If there are N neurons in the network, the capacity is approximately e(N-1) ! , i.e., much larger than that of most traditional network structures. We show that a small winnerless competition network composed of FitzHugh-Nagumo spiking neurons efficiently transforms input information into a spatiotemporal output

  18. Genome Encoding in Genetic and EDA Algorithms for Rule Extraction

    Czech Academy of Sciences Publication Activity Database

    Haničinec, T.; Holeňa, Martin

    Praha : Matfyzpress, 2010 - (Obdržálek, J.; Plátek, M.), s. 3-16 ISBN 978-80-7378-148-4. [ MIS 2010. Malý informatický seminář /27./. Josefův důl (CZ), 16.01.2010-23.01.2010] R&D Projects: GA MŠk ME 949 Institutional research plan: CEZ:AV0Z10300504 Keywords : rule extraction * genetic algorithm * EDA algorithm * genome encoding Subject RIV: IN - Informatics, Computer Science

  19. Velocity estimation using recursive ultrasound imaging and spatially encoded signals

    DEFF Research Database (Denmark)

    Nikolov, Svetoslav; Gammelmark, Kim; Jensen, Jørgen Arendt

    2000-01-01

    subtracted yielding a new frame at every pulse emission. In this paper the method is extended to blood velocity estimation, where a new color flow mapping (CFM) image is created after every pulse emission. The underlying assumption is that the velocity is constant between two pulse emissions and the current...... time using orthogonal spatial encoding signals. The method was applied on data recorded by an experimental system. The estimates of the blood velocity for both methods had a bias less than 3% and a standard deviation around 2% making them a feasible approach for blood velocity estimations...

  20. Cloning of Salmonella typhimurium DNA encoding mutagenic DNA repair.

    OpenAIRE

    Thomas, S M; Sedgwick, S G

    1989-01-01

    Mutagenic DNA repair in Escherichia coli is encoded by the umuDC operon. Salmonella typhimurium DNA which has homology with E. coli umuC and is able to complement E. coli umuC122::Tn5 and umuC36 mutations has been cloned. Complementation of umuD44 mutants and hybridization with E. coli umuD also occurred, but these activities were much weaker than with umuC. Restriction enzyme mapping indicated that the composition of the cloned fragment is different from the E. coli umuDC operon. Therefore, ...

  1. Multi-Element Synthetic Transmit Aperture Imaging using Temporal Encoding

    DEFF Research Database (Denmark)

    Gammelmark, Kim; Jensen, Jørgen Arendt

    A new method to increase the signal-to-noise-ratio (SNR) of synthetic transmit aperture (STA) imaging is investigated. The new approach is called temporally Encoded Multi-Element STA imaging (EMESTA). It utilizes multiple elements to emulate a single transmit element, and the conventional short...... show better performance for EMESTA imaging after the linear array focus. Both methods have similar contrast performance. Measurements areperformed using our experimental multi-channel ultrasound scanning system, RASMUS. The designed linear FM signal obtains temporal side lobes below -55 dB, and SNR...

  2. Analysis of Laser-encoding Remote-control Explosive System

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    According to the requirements, an active infrared system is designed, which is composed of the emitting and receiving parts. The emitting part consists of a GaAs semiconductor laser device and binoculars optical system. A Si photodiode is selected as the receiving device, and a preamplifier circuit is designed to match the detector and further improve the signal to noise ratio. The laser-encoding mode is utilized to enhance the anti-disturbance. The theoretical analysis of this system is presented and a system prototype is made according to the requirement. The experimental results agree well with the theoretical prediction.

  3. Optimal Encoding of Data in Data Transmission Channels

    Directory of Open Access Journals (Sweden)

    Silviu Draghici

    2013-01-01

    Full Text Available This paper aims to present the methods of achieving an optimal encoding in the data communication channels. After a short description of the communication channel and of the data communication channel types, follow briefly a few notions of the data channel enthropy, information, transinformation, with their properties, definitions and mathematical relations connecting them. Chapter 2 presents the concept of optimal code, following a detailed description (using two suggestive examples of the two main methods used to obtain an optimal code: Shannon-Fano and Huffman.

  4. Double random phase encoding using phase reservation and compression

    International Nuclear Information System (INIS)

    In recent years, various studies have been conducted to illustrate the vulnerability of double random phase encoding (DRPE). In this paper, we propose a novel method via phase reservation and compression to enhance DRPE security. Only a compressed phase distribution is available in the CCD plane, and the amplitude component is not available or requested for optical decryption. Since only noise-like distributions can be obtained by using the correct security keys during optical decryption, a nonlinear correlation algorithm is further applied for authenticating the decrypted image. It is demonstrated that valid conditions for attack algorithms are broken and high security can be achieved for the DRPE system. (paper)

  5. A versatile integrated block codes encoder-decoder

    Science.gov (United States)

    Laurent, P. A.

    1989-12-01

    A new Very Large Scale Integrated (VLSI) circuit which is designed to perform encoding and decoding of almost all Reed-Solomon and BCH codes (including generalized BCH) using symbol sizes from 1 to 8 bits. It is fully programmable by many standard microprocessors which consider it like any other more common co-processor. Its architecture allows a high bit rate and a great flexibility. The interfacing protocol is optimized for minimizing time constraint (mail boxes) and limiting programming effort: no advanced knowledge of codes is required to use it.

  6. Encoding of action by the Purkinje cells of the cerebellum

    OpenAIRE

    Herzfeld, David J.; Kojima, Yoshiko; Soetedjo, Robijanto; Shadmehr, Reza

    2015-01-01

    Summary Execution of accurate eye movements depends critically on the cerebellum 1,2,3 , suggesting that Purkinje cells (P-cells) may predict motion of the eye. Yet, this encoding has remained a long-standing puzzle: P-cells show little consistent modulation with respect to saccade amplitude 4,5 or direction 4 , and critically, their discharge lasts longer than duration of a saccade 6,7 . Here, we analyzed P-cell discharge in the oculomotor vermis of behaving monkeys 8,9 and found neurons tha...

  7. Event retrieval in large video collections with circulant temporal encoding

    OpenAIRE

    Revaud, Jérôme; Douze, Matthijs; Schmid, Cordelia; Jégou, Hervé

    2013-01-01

    International audience This paper presents an approach for large-scale event retrieval. Given a video clip of a specific event, e.g., the wedding of Prince William and Kate Middleton, the goal is to retrieve other videos representing the same event from a dataset of over 100k videos. Our approach encodes the frame descriptors of a video to jointly represent their appearance and temporal order. It exploits the properties of circulant matrices to compare the videos in the frequency domain. T...

  8. Quantum key distribution using multilevel encoding: security analysis

    International Nuclear Information System (INIS)

    We propose an extension of quantum key distribution based on encoding the key into quNits, i.e. quantum states in an N-dimensional Hilbert space. We estimate both the mutual information between the legitimate parties and the eavesdropper, and the error rate, as a function of the dimension of the Hilbert space. We derive the information gained by an eavesdropper using optimal incoherent attacks and an upper bound on the legitimate party error rate that ensures unconditional security when the eavesdropper uses finite coherent eavesdropping attacks. We also consider realistic systems where we assume that the detector dark count probability is not negligible

  9. Encoder-decoder optimization for brain-computer interfaces.

    Directory of Open Access Journals (Sweden)

    Josh Merel

    2015-06-01

    Full Text Available Neuroprosthetic brain-computer interfaces are systems that decode neural activity into useful control signals for effectors, such as a cursor on a computer screen. It has long been recognized that both the user and decoding system can adapt to increase the accuracy of the end effector. Co-adaptation is the process whereby a user learns to control the system in conjunction with the decoder adapting to learn the user's neural patterns. We provide a mathematical framework for co-adaptation and relate co-adaptation to the joint optimization of the user's control scheme ("encoding model" and the decoding algorithm's parameters. When the assumptions of that framework are respected, co-adaptation cannot yield better performance than that obtainable by an optimal initial choice of fixed decoder, coupled with optimal user learning. For a specific case, we provide numerical methods to obtain such an optimized decoder. We demonstrate our approach in a model brain-computer interface system using an online prosthesis simulator, a simple human-in-the-loop pyschophysics setup which provides a non-invasive simulation of the BCI setting. These experiments support two claims: that users can learn encoders matched to fixed, optimal decoders and that, once learned, our approach yields expected performance advantages.

  10. Novelty encoding by the output neurons of the basal ganglia

    Directory of Open Access Journals (Sweden)

    Mati Joshua

    2010-01-01

    Full Text Available Reinforcement learning models of the basal ganglia have focused on the resemblance of the dopamine signal to the temporal difference error. However the role of the network as a whole is still elusive, in particular whether the output of the basal ganglia encodes only the behavior (actions or it is part of the valuation process. We trained a monkey extensively on a probabilistic conditional task with seven fractal cues predicting rewarding or aversive outcomes (familiar cues. Then in each recording session we added a cue that the monkey had never seen before (new cue and recorded from single units in the Substantia Nigra pars reticulata (SNpr while the monkey was engaged in a task with new cues intermingled within the familiar ones. The monkey learned the association between the new cue and outcome and modified its licking and blinking behavior which became similar to responses to the familiar cues with the same outcome. However, the responses of many SNpr neurons to the new cue exceeded their response to familiar cues even after behavioral learning was completed. This dissociation between behavior and neural activity suggests that the BG output code goes beyond instruction or gating of behavior to encoding of novel cues. Thus, BG output can enable learning at the levels of its target neural networks.

  11. Bacteriophage-encoded depolymerases: their diversity and biotechnological applications.

    Science.gov (United States)

    Pires, Diana P; Oliveira, Hugo; Melo, Luís D R; Sillankorva, Sanna; Azeredo, Joana

    2016-03-01

    Bacteriophages (phages), natural enemies of bacteria, can encode enzymes able to degrade polymeric substances. These substances can be found in the bacterial cell surface, such as polysaccharides, or are produced by bacteria when they are living in biofilm communities, the most common bacterial lifestyle. Consequently, phages with depolymerase activity have a facilitated access to the host receptors, by degrading the capsular polysaccharides, and are believed to have a better performance against bacterial biofilms, since the degradation of extracellular polymeric substances by depolymerases might facilitate the access of phages to the cells within different biofilm layers. Since the diversity of phage depolymerases is not yet fully explored, this is the first review gathering information about all the depolymerases encoded by fully sequenced phages. Overall, in this study, 160 putative depolymerases, including sialidases, levanases, xylosidases, dextranases, hyaluronidases, peptidases as well as pectate/pectin lyases, were found in 143 phages (43 Myoviridae, 47 Siphoviridae, 37 Podoviridae, and 16 unclassified) infecting 24 genera of bacteria. We further provide information about the main applications of phage depolymerases, which can comprise areas as diverse as medical, chemical, or food-processing industry. PMID:26767986

  12. Magnetic-encoded fluorescent multifunctional nanospheres for simultaneous multicomponent analysis.

    Science.gov (United States)

    Song, Erqun; Han, Weiye; Li, Jingrong; Jiang, Yunfei; Cheng, Dan; Song, Yang; Zhang, Pu; Tan, Weihong

    2014-10-01

    In this study, magnetic-encoded fluorescent (CdTe/Fe3O4)@SiO2 multifunctional nanospheres were constructed by adjusting the initial concentration of Fe3O4 in a fabrication process based on reverse microemulsion. The resultant multifunctional nanospheres were characterized by transmission electron microscopy, X-ray diffraction measurements, fluorescence spectrophotometry, and vibrating sample magnetometry. They showed good fluorescence properties, gradient magnetic susceptibility (weak, moderate, and strong), and easy biofunctionalization for biomolecules, such as immunoglobulin G (IgG), protein, and antibody. Then the capture efficiency of the (CdTe/Fe3O4)@SiO2 nanospheres were investigated by using the fluorophore-labeled IgG-conjugated nanospheres as a model. Further studies demonstrated the ability of these (CdTe/Fe3O4)@SiO2 multifunctional nanospheres to accomplish sequentially magnetic separation, capture, and fluorescent detection for each corresponding antigen of CA125, AFP, and CEA with a detection limit of 20 KU/L, 10 ng/mL, and 5 ng/mL, respectively, from a mixed sample under a certain external magnetic field within a few minutes. The strategy of combining magnetic-encoding-based separation and fluorescence-based detection proposed in this study shows great potential to achieve easy, rapid, economical, and near-simultaneous multicomponent separation and analysis for a variety of targets such as drugs, biomarkers, pathogens, and so on. PMID:25197942

  13. Crystal Structure of a Virus-Encoded Putative Glycosyltransferase

    Energy Technology Data Exchange (ETDEWEB)

    Xiang, Ye; Baxa, Ulrich; Zhang, Ying; Steven, Alasdair C.; Lewis, Gentry L.; Van Etten, James L.; Rossmann, Michael G. (NIH); (UNL)

    2010-11-22

    The chloroviruses (family Phycodnaviridae), unlike most viruses, encode some, if not most, of the enzymes involved in the glycosylation of their structural proteins. Annotation of the gene product B736L from chlorovirus NY-2A suggests that it is a glycosyltransferase. The structure of the recombinantly expressed B736L protein was determined by X-ray crystallography to 2.3-{angstrom} resolution, and the protein was shown to have two nucleotide-binding folds like other glycosyltransferase type B enzymes. This is the second structure of a chlorovirus-encoded glycosyltransferase and the first structure of a chlorovirus type B enzyme to be determined. B736L is a retaining enzyme and belongs to glycosyltransferase family 4. The donor substrate was identified as GDP-mannose by isothermal titration calorimetry and was shown to bind into the cleft between the two domains in the protein. The active form of the enzyme is probably a dimer in which the active centers are separated by about 40 {angstrom}.

  14. Alpha oscillations and early stages of visual encoding

    Directory of Open Access Journals (Sweden)

    RomanFreunberger

    2011-05-01

    Full Text Available For a long time alpha oscillations have been functionally linked to the processing of visual information. Here we propose an new theory about the functional meaning of alpha. The central idea is that synchronized alpha reflects a basic processing mode that controls access to information stored in a complex long-term memory system, which we term knowledge system (KS in order to emphasize that it comprises not only declarative memories but any kind of knowledge comprising also procedural information. Based on this theoretical background, we assume that during early stages of perception, alpha ‘directs the flow of information’ to those neural structures which represent information that is relevant for encoding. The physiological function of alpha is interpreted in terms of inhibition. We assume that alpha enables access to stored information by inhibiting task irrelevant neuronal structures and by timing cortical activity in task relevant neuronal structures. We discuss a variety findings showing that evoked alpha and phase locking reflect successful encoding of global stimulus features in an early poststimulus interval of about 0 - 150 ms.

  15. When pitch Accents Encode Speaker Commitment: Evidence from French Intonation.

    Science.gov (United States)

    Michelas, Amandine; Portes, Cristel; Champagne-Lavau, Maud

    2016-06-01

    Recent studies on a variety of languages have shown that a speaker's commitment to the propositional content of his or her utterance can be encoded, among other strategies, by pitch accent types. Since prior research mainly relied on lexical-stress languages, our understanding of how speakers of a non-lexical-stress language encode speaker commitment is limited. This paper explores the contribution of the last pitch accent of an intonation phrase to convey speaker commitment in French, a language that has stress at the phrasal level as well as a restricted set of pitch accents. In a production experiment, participants had to produce sentences in two pragmatic contexts: unbiased questions (the speaker had no particular belief with respect to the expected answer) and negatively biased questions (the speaker believed the proposition to be false). Results revealed that negatively biased questions consistently exhibited an additional unaccented F0 peak in the preaccentual syllable (an H+!H* pitch accent) while unbiased questions were often realized with a rising pattern across the accented syllable (an H* pitch accent). These results provide evidence that pitch accent types in French can signal the speaker's belief about the certainty of the proposition expressed in French. It also has implications for the phonological model of French intonation. PMID:27363256

  16. How the visual brain encodes and keeps track of time.

    Science.gov (United States)

    Salvioni, Paolo; Murray, Micah M; Kalmbach, Lysiann; Bueti, Domenica

    2013-07-24

    Time is embedded in any sensory experience: the movements of a dance, the rhythm of a piece of music, the words of a speaker are all examples of temporally structured sensory events. In humans, if and how visual cortices perform temporal processing remains unclear. Here we show that both primary visual cortex (V1) and extrastriate area V5/MT are causally involved in encoding and keeping time in memory and that this involvement is independent from low-level visual processing. Most importantly we demonstrate that V1 and V5/MT come into play simultaneously and seem to be functionally linked during interval encoding, whereas they operate serially (V1 followed by V5/MT) and seem to be independent while maintaining temporal information in working memory. These data help to refine our knowledge of the functional properties of human visual cortex, highlighting the contribution and the temporal dynamics of V1 and V5/MT in the processing of the temporal aspects of visual information. PMID:23884947

  17. Encoding audio motion: spatial impairment in early blind individuals.

    Science.gov (United States)

    Finocchietti, Sara; Cappagli, Giulia; Gori, Monica

    2015-01-01

    The consequence of blindness on auditory spatial localization has been an interesting issue of research in the last decade providing mixed results. Enhanced auditory spatial skills in individuals with visual impairment have been reported by multiple studies, while some aspects of spatial hearing seem to be impaired in the absence of vision. In this study, the ability to encode the trajectory of a 2-dimensional sound motion, reproducing the complete movement, and reaching the correct end-point sound position, is evaluated in 12 early blind (EB) individuals, 8 late blind (LB) individuals, and 20 age-matched sighted blindfolded controls. EB individuals correctly determine the direction of the sound motion on the horizontal axis, but show a clear deficit in encoding the sound motion in the lower side of the plane. On the contrary, LB individuals and blindfolded controls perform much better with no deficit in the lower side of the plane. In fact the mean localization error resulted 271 ± 10 mm for EB individuals, 65 ± 4 mm for LB individuals, and 68 ± 2 mm for sighted blindfolded controls. These results support the hypothesis that (i) it exists a trade-off between the development of enhanced perceptual abilities and role of vision in the sound localization abilities of EB individuals, and (ii) the visual information is fundamental in calibrating some aspects of the representation of auditory space in the brain. PMID:26441733

  18. Semantics of the Visual Environment Encoded in Parahippocampal Cortex.

    Science.gov (United States)

    Bonner, Michael F; Price, Amy Rose; Peelle, Jonathan E; Grossman, Murray

    2016-03-01

    Semantic representations capture the statistics of experience and store this information in memory. A fundamental component of this memory system is knowledge of the visual environment, including knowledge of objects and their associations. Visual semantic information underlies a range of behaviors, from perceptual categorization to cognitive processes such as language and reasoning. Here we examine the neuroanatomic system that encodes visual semantics. Across three experiments, we found converging evidence indicating that knowledge of verbally mediated visual concepts relies on information encoded in a region of the ventral-medial temporal lobe centered on parahippocampal cortex. In an fMRI study, this region was strongly engaged by the processing of concepts relying on visual knowledge but not by concepts relying on other sensory modalities. In a study of patients with the semantic variant of primary progressive aphasia (semantic dementia), atrophy that encompassed this region was associated with a specific impairment in verbally mediated visual semantic knowledge. Finally, in a structural study of healthy adults from the fMRI experiment, gray matter density in this region related to individual variability in the processing of visual concepts. The anatomic location of these findings aligns with recent work linking the ventral-medial temporal lobe with high-level visual representation, contextual associations, and reasoning through imagination. Together, this work suggests a critical role for parahippocampal cortex in linking the visual environment with knowledge systems in the human brain. PMID:26679216

  19. Large-margin Learning of Compact Binary Image Encodings.

    Science.gov (United States)

    Paisitkriangkrai, Sakrapee; Shen, Chunhua; Van den Hengel, Anton

    2014-07-16

    The use of high-dimensional features has become a normal practice in many computer vision applications. The large dimension of these features is a limiting factor upon the number of data points which may be effectively stored and processed, however. We address this problem by developing a novel approach to learning a compact binary encoding, which exploits both pair-wise proximity and class-label information on training data set. Exploiting this extra information allows the development of encodings which, although compact, outperform the original high-dimensional features in terms of final classification or retrieval performance. The method is general, in that it is applicable to both non-parametric and parametric learning methods. This generality means that the embedded features are suitable for a wide variety of computer vision tasks, such as image classification and content-based image retrieval. Experimental results demonstrate that the new compact descriptor achieves an accuracy comparable to, and in some cases better than, the visual descriptor in the original space despite being significantly more compact. Moreover, any convex loss function and convex regularization penalty (e.g., `p norm with p 1) can be incorporated into the framework, which provides future flexibility. PMID:25051551

  20. Elemental gesture dynamics are encoded by song premotor cortical neurons.

    Science.gov (United States)

    Amador, Ana; Perl, Yonatan Sanz; Mindlin, Gabriel B; Margoliash, Daniel

    2013-03-01

    Quantitative biomechanical models can identify control parameters that are used during movements, and movement parameters that are encoded by premotor neurons. We fit a mathematical dynamical systems model including subsyringeal pressure, syringeal biomechanics and upper-vocal-tract filtering to the songs of zebra finches. This reduces the dimensionality of singing dynamics, described as trajectories (motor 'gestures') in a space of syringeal pressure and tension. Here we assess model performance by characterizing the auditory response 'replay' of song premotor HVC neurons to the presentation of song variants in sleeping birds, and by examining HVC activity in singing birds. HVC projection neurons were excited and interneurons were suppressed within a few milliseconds of the extreme time points of the gesture trajectories. Thus, the HVC precisely encodes vocal motor output through activity at the times of extreme points of movement trajectories. We propose that the sequential activity of HVC neurons is used as a 'forward' model, representing the sequence of gestures in song to make predictions on expected behaviour and evaluate feedback. PMID:23446354

  1. Phonological Encoding in Mandarin Chinese: Evidence from Tongue Twisters.

    Science.gov (United States)

    Kember, Heather; Croot, Karen; Patrick, Ellis

    2015-12-01

    Models of connected speech production in Mandarin Chinese must specify how lexical tone, speech segments, and phrase-level prosody are integrated in speech production. This study used tongue twisters to test predictions of the two different models of word form encoding. Tongue twisters were constructed from 5 sets of characters that rotated pairs of initial segments or pairs of tones, or both, across format (ABAB, ABBA), and across position of the characters in four-character tongue twister strings. Fifty two native Mandarin Chinese speakers read aloud 120 tongue twisters, repeating each one six times in a row. They made a total of 3503 (2.34%) segment errors and 1372 (.92%) tone errors. Segment errors occurred on the onsets of the first and third characters in the ABBA but not ABAB segment-alternating tongue twisters, and on the onsets of the second and fourth characters of the tone-alternating tongue twisters. Tone errors were highest on the third and fourth characters in the tone-alternating tongue twisters. The pattern of tone errors is consistent with the claim that tone is associated to a metrical frame prior to segment encoding, while the format by position interaction found for the segment-alternating tongue twisters suggest articulatory gestures oscillate in segment production as proposed by gestural phonology. PMID:27483738

  2. Encoding of action by the Purkinje cells of the cerebellum.

    Science.gov (United States)

    Herzfeld, David J; Kojima, Yoshiko; Soetedjo, Robijanto; Shadmehr, Reza

    2015-10-15

    Execution of accurate eye movements depends critically on the cerebellum, suggesting that the major output neurons of the cerebellum, Purkinje cells, may predict motion of the eye. However, this encoding of action for rapid eye movements (saccades) has remained unclear: Purkinje cells show little consistent modulation with respect to saccade amplitude or direction, and critically, their discharge lasts longer than the duration of a saccade. Here we analysed Purkinje-cell discharge in the oculomotor vermis of behaving rhesus monkeys (Macaca mulatta) and found neurons that increased or decreased their activity during saccades. We estimated the combined effect of these two populations via their projections to the caudal fastigial nucleus, and uncovered a simple-spike population response that precisely predicted the real-time motion of the eye. When we organized the Purkinje cells according to each cell's complex-spike directional tuning, the simple-spike population response predicted both the real-time speed and direction of saccade multiplicatively via a gain field. This suggests that the cerebellum predicts the real-time motion of the eye during saccades via the combined inputs of Purkinje cells onto individual nucleus neurons. A gain-field encoding of simple spikes emerges if the Purkinje cells that project onto a nucleus neuron are not selected at random but share a common complex-spike property. PMID:26469054

  3. Cloning of cDNA Encoding GRA1 Protein of Tachyzoite Toxoplasma Gondii Local Isolate

    Directory of Open Access Journals (Sweden)

    Erma Sulistyaningsih

    2015-10-01

    Full Text Available Gene encoding GRA1 protein is potent DNA-vaccine candidate against toxoplasmosis. The aim of the researchwas to clone the gene encoding GRA1 protein of tachyzoite Toxoplasma gondii local isolate by DNA recombinanttechnology. Tachyzoite was grown in Balb/c mice in vivo. Messenger RNA was isolated from total RNA and itwas used to synthesis cDNA. Complementary DNA encoding GRA1 protein of tachyzoite Toxoplasma gondii localisolate was amplified and cloned in a prokaryote cloning vector. The recombinant GRA1-encoding gene was thendigesting using EcoRI restriction endonuclease and sequencing. The result showed that the recombinant GRA1-encoding gene consisted of DNA sequences encoding all signal peptide and mature peptide of GRA1 protein.Alignment of recombinant GRA1 sequence to gene encoding GRA1 protein of Toxoplasma gondii RH isolate showed100% homologous.Keywords: GRA1 protein, Toxoplasma gondii, tachyzoite, cloning, cDNA

  4. Encoding of Primary Structures of Biological Macromolecules Within a Data Mining Perspective

    Institute of Scientific and Technical Information of China (English)

    Mondher Maddouri; Mourad Elloumi

    2004-01-01

    An encoding method has a direct effect on the quality and the representation of the discovered knowledge in data mining systems. Biological macromolecules are encoded by strings of characters, called primary structures. Knowing that data mining systems usually use relational tables to encode data, we have then to reencode these strings and transform them into relational tables. In this paper, we do a comparative study of the existing static encoding methods, that are based on the Biologist know-how, and our new dynamic encoding one,that is based on the construction of Discriminant and Minimal Substrings (DMS). Different classification methods are used to do this study. The experimental results show that our dynamic encoding method is more efficient than the static ones, to encode biological macromolecules within a data mining perspective.

  5. Low Complexity Encoder of High Rate Irregular QC-LDPC Codes for Partial Response Channels

    Directory of Open Access Journals (Sweden)

    IMTAWIL, V.

    2011-11-01

    Full Text Available High rate irregular QC-LDPC codes based on circulant permutation matrices, for efficient encoder implementation, are proposed in this article. The structure of the code is an approximate lower triangular matrix. In addition, we present two novel efficient encoding techniques for generating redundant bits. The complexity of the encoder implementation depends on the number of parity bits of the code for the one-stage encoding and the length of the code for the two-stage encoding. The advantage of both encoding techniques is that few XOR-gates are used in the encoder implementation. Simulation results on partial response channels also show that the BER performance of the proposed code has gain over other QC-LDPC codes.

  6. Method and system for efficient video compression with low-complexity encoder

    Science.gov (United States)

    Chen, Jun (Inventor); He, Dake (Inventor); Jagmohan, Ashish (Inventor); Lu, Ligang (Inventor); Sheinin, Vadim (Inventor)

    2012-01-01

    Disclosed are a method and system for video compression, wherein the video encoder has low computational complexity and high compression efficiency. The disclosed system comprises a video encoder and a video decoder, wherein the method for encoding includes the steps of converting a source frame into a space-frequency representation; estimating conditional statistics of at least one vector of space-frequency coefficients; estimating encoding rates based on the said conditional statistics; and applying Slepian-Wolf codes with the said computed encoding rates. The preferred method for decoding includes the steps of; generating a side-information vector of frequency coefficients based on previously decoded source data, encoder statistics, and previous reconstructions of the source frequency vector; and performing Slepian-Wolf decoding of at least one source frequency vector based on the generated side-information, the Slepian-Wolf code bits and the encoder statistics.

  7. Comparing Haar-Hilbert and Log-Gabor Based Iris Encoders on Bath Iris Image Database

    CERN Document Server

    Popescu-Bodorin, Nicolaie; 10.1109/SOFA.2010.5565599

    2011-01-01

    This papers introduces a new family of iris encoders which use 2-dimensional Haar Wavelet Transform for noise attenuation, and Hilbert Transform to encode the iris texture. In order to prove the usefulness of the newly proposed iris encoding approach, the recognition results obtained by using these new encoders are compared to those obtained using the classical Log- Gabor iris encoder. Twelve tests involving single/multienrollment and conducted on Bath Iris Image Database are presented here. One of these tests achieves an Equal Error Rate comparable to the lowest value reported so far for this database. New Matlab tools for iris image processing are also released together with this paper: a second version of the Circular Fuzzy Iris Segmentator (CFIS2), a fast Log-Gabor encoder and two Haar-Hilbert based encoders.

  8. Properties of virion transactivator proteins encoded by primate cytomegaloviruses

    Directory of Open Access Journals (Sweden)

    Barry Peter A

    2009-05-01

    Full Text Available Abstract Background Human cytomegalovirus (HCMV is a betaherpesvirus that causes severe disease in situations where the immune system is immature or compromised. HCMV immediate early (IE gene expression is stimulated by the virion phosphoprotein pp71, encoded by open reading frame (ORF UL82, and this transactivation activity is important for the efficient initiation of viral replication. It is currently recognized that pp71 acts to overcome cellular intrinsic defences that otherwise block viral IE gene expression, and that interactions of pp71 with the cell proteins Daxx and ATRX are important for this function. A further property of pp71 is the ability to enable prolonged gene expression from quiescent herpes simplex virus type 1 (HSV-1 genomes. Non-human primate cytomegaloviruses encode homologs of pp71, but there is currently no published information that addresses their effects on gene expression and modes of action. Results The UL82 homolog encoded by simian cytomegalovirus (SCMV, strain Colburn, was identified and cloned. This ORF, named S82, was cloned into an HSV-1 vector, as were those from baboon, rhesus monkey and chimpanzee cytomegaloviruses. The use of an HSV-1 vector enabled expression of the UL82 homologs in a range of cell types, and permitted investigation of their abilities to direct prolonged gene expression from quiescent genomes. The results show that all UL82 homologs activate gene expression, and that neither host cell type nor promoter target sequence has major effects on these activities. Surprisingly, the UL82 proteins specified by non-human primate cytomegaloviruses, unlike pp71, did not direct long term expression from quiescent HSV-1 genomes. In addition, significant differences were observed in the intranuclear localization of the UL82 homologs, and in their effects on Daxx. Strikingly, S82 mediated the release of Daxx from nuclear domain 10 substructures much more rapidly than pp71 or the other proteins tested. All

  9. SENSE (sensitivity encoding) for diffusion tensor imaging of the brain

    International Nuclear Information System (INIS)

    The sensitivity encoding (SENSE) technique is increasingly being used with clinical MRI scanners. The object of this study is to compare the normative human data and image quality of the diffusion tensor imaging (DTI) with sensitivity encoding (SENSE) and standard single-shot EPI techniques. 16 normal volunteers underwent single-shot echo-planar DTI with both standard and SENSE sequences using a 1.5 T Philips Intera MR scanner (TR/TE=6755/74 or 5871/66 ms, echo train length 127 or 67, NEX=3, matrix= 128 x 128, FOV=220 x 220 mm, slice thickness=4 mm, b value=600 s/mm2, six orthogonal diffusion gradients). The diffusion tensor-encoded MR images were transferred to a PC workstation and analyzed using in-house software. The fractional anisotropy (FA) and apparent diffusion coefficient (ADC) maps were calculated. The presence of artifacts (ghost susceptibility, eddy current) was graded with a two- or three-point scale. The ADC and FA values were measured in the major white matter tract and gray matter nuclei. The signal-to-noise ratio was also measured. Fisher's exact test and the Mann-Whitney test were used for the statistical analysis. With SENSE, the acquisition time was reduced from 2 min 57 sec to 1 min 22 sec for DTI. Susceptibility artifacts (around the brain stem and temporal base) and eddy current artifacts were significantly reduced on the SENSE DTI as compared with those on the standard DTI (p<0.05). No ghost artifacts were observed on the SENSE DTI, whereas such artifacts were observed in 14 cases (87.5%) on the standard DTI. The ADC value was not significantly different between the SENSE DTI and the standard DTI, whereas the FA values in the cerebral cortex and white matter were significantly higher on the SENSE DTI than on the standard DTI (p<0.05). The signal-to-noise ratio was 8.44 on the standard DTI and 11.40 on the standard DTI. The use of SENSE DTI significantly reduces the geometric distortion caused by artifacts, shortens the acquisition time, and

  10. Efficient SAT Techniques for Relative Encoding of Permutations with Constraints

    Science.gov (United States)

    Velev, Miroslav N.; Gao, Ping

    We present new techniques for relative SAT encoding of permutations with constraints, resulting in improved scalability compared to the previous approach by Prestwich, when applied to searching for Hamiltonian cycles. We observe that half of the ordering variables and two-thirds of the transitivity constraints can be eliminated. We exploit minimal enumeration of transitivity, based on 12 triangulation heuristics, and 11 heuristics for selecting the first node in the Hamiltonian cycle. We propose the use of inverse transitivity constraints. We achieve 3 orders of magnitude average speedup on satisfiable random graphs from the phase transition region, 2 orders of magnitude average speedup on unsatisfiable random graphs, and up to 4 orders of magnitude speedup on satisfiable structured graphs from the DIMACS graph coloring instances.

  11. IMAGE HIDING IN DNA SEQUENCE USING ARITHMETIC ENCODING

    Directory of Open Access Journals (Sweden)

    Prof. Samir Kumar Bandyopadhyay

    2011-05-01

    Full Text Available Recently, biological techniques become more and more popular, as they are applied to many kinds of applications, authentication protocols, biochemistry, and cryptography. One of the most interesting biology techniques is deoxyribo nucleic acid and using it in such domains. Hiding secret data in deoxyribo nucleic acid becomes an important and interesting research topic. Some researchers hide the secret data in transcribed deoxyribo nucleic acid, translated ribo nucleic acid regions, or active coding segments where it doesn't mention to modify the original sequence, but others hide data in non-transcribed deoxyribo nucleic acid, non-translated ribo nucleic acid regions, or active coding segments. Unfortunately, these schemes either alter the functionalities or modify the original deoxyribo nucleic acid sequences. DNA has the ability to store large amount of digital data. This paper presents a method to hide an image in DNA sequence using arithmetic encoding.

  12. Multi-Element Synthetic Transmit Aperture Imaging using Temporal Encoding

    DEFF Research Database (Denmark)

    Gammelmark, Kim; Jensen, Jørgen Arendt

    2002-01-01

    A new method to increase the signal-to-noise-ratio (SNR) of synthetic transmit aperture (STA) imaging is investigated. The new approach is called temporally Encoded Multi-Element STA imaging (EMESTA). It utilizes multiple elements to emulate a single transmit element, and the conventional short...... investigations show improvements of 4-12 dB. The depth performance is investigated using a multi-target phantom. Results show a 30 mm increase in penetration depth with improved spatial resolution.In conclusion, EMESTA imaging significantly increases the SNR of STA imaging, exceeding that of linear arrayimaging...... excitation pulsesare replaced by linear FM signals. Simulations using Field II and measurements are compared to linear array imaging.A theoretical analysis shows a possible improvement in SNR of 17 dB. Simulations are done using an 8.5 MHzlinear array transducer with 128 elements. Spatial resolution results...

  13. Discovery and characterization of smORF-encoded bioactive polypeptides.

    Science.gov (United States)

    Saghatelian, Alan; Couso, Juan Pablo

    2015-12-01

    Analysis of genomes, transcriptomes and proteomes reveals the existence of hundreds to thousands of translated, yet non-annotated, short open reading frames (small ORFs or smORFs). The discovery of smORFs and their protein products, smORF-encoded polypeptides (SEPs), points to a fundamental gap in our knowledge of protein-coding genes. Various studies have identified central roles for smORFs in metabolism, apoptosis and development. The discovery of these bioactive SEPs emphasizes the functional potential of this unexplored class of biomolecules. Here, we provide an overview of this emerging field and highlight the opportunities for chemical biology to answer fundamental questions about these novel genes. Such studies will provide new insights into the protein-coding potential of genomes and identify functional genes with roles in biology and disease. PMID:26575237

  14. Design studies of a depth encoding large aperture PET camera

    International Nuclear Information System (INIS)

    The feasibility of a wholebody PET tomograph with the capacity to correct for the parallax error induced by the Depth-Of-Interaction of γ-rays is assessed through simulation. The experimental energy, depth, and transverse position resolutions of BGO block detector candidates are the main inputs to a simulation that predicts the point source resolution of the Depth Encoding Large Aperture Camera (DELAC). The results indicate that a measured depth resolution of 7 mm (FWHM) is sufficient to correct a substantial part of the parallax error for a point source at the edge of the Field-Of-View. A search for the block specifications and camera ring radius that would optimize the spatial resolution and its uniformity across the Field-Of-View is also presented. (author). 10 refs., 1 tab., 5 figs

  15. Calibration transfer via an extreme learning machine auto-encoder.

    Science.gov (United States)

    Chen, Wo-Ruo; Bin, Jun; Lu, Hong-Mei; Zhang, Zhi-Min; Liang, Yi-Zeng

    2016-03-21

    In order to solve the spectra standardization problem in near-infrared (NIR) spectroscopy, a Transfer via Extreme learning machine Auto-encoder Method (TEAM) has been proposed in this study. A comparative study among TEAM, piecewise direct standardization (PDS), generalized least squares (GLS) and calibration transfer methods based on canonical correlation analysis (CCA) was conducted, and the performances of these algorithms were benchmarked with three spectral datasets: corn, tobacco and pharmaceutical tablet spectra. The results show that TEAM is a stable method and can significantly reduce prediction errors compared with PDS, GLS and CCA. TEAM can also achieve the best RMSEPs in most cases with a small number of calibration sets. TEAM is implemented in Python language and available as an open source package at https://github.com/zmzhang/TEAM. PMID:26846329

  16. Feature-specific encoding flexibility in visual working memory.

    Directory of Open Access Journals (Sweden)

    Aki Kondo

    Full Text Available The current study examined selective encoding in visual working memory by systematically investigating interference from task-irrelevant features. The stimuli were objects defined by three features (color, shape, and location, and during a delay period, any of the features could switch between two objects. Additionally, single- and whole-probe trials were randomized within experimental blocks to investigate effects of memory retrieval. A series of relevant-feature switch detection tasks, where one feature was task-irrelevant, showed that interference from the task-irrelevant feature was only observed in the color-shape task, suggesting that color and shape information could be successfully filtered out, but location information could not, even when location was a task-irrelevant feature. Therefore, although location information is added to object representations independent of task demands in a relatively automatic manner, other features (e.g., color, shape can be flexibly added to object representations.

  17. The implications of alternative splicing in the ENCODE protein complement

    DEFF Research Database (Denmark)

    Tress, Michael L.; Martelli, Pier Luigi; Frankish, Adam;

    2007-01-01

    Alternative premessenger RNA splicing enables genes to generate more than one gene product. Splicing events that occur within protein coding regions have the potential to alter the biological function of the expressed protein and even to create new protein functions. Alternative splicing has been...... suggested as one explanation for the discrepancy between the number of human genes and functional complexity. Here, we carry out a detailed study of the alternatively spliced gene products annotated in the ENCODE pilot project. We find that alternative splicing in human genes is more frequent than has...... commonly been suggested, and we demonstrate that many of the potential alternative gene products will have markedly different structure and function from their constitutively spliced counterparts. For the vast majority of these alternative isoforms, little evidence exists to suggest they have a role as...

  18. Sparse encoding of automatic visual association in hippocampal networks

    DEFF Research Database (Denmark)

    Hulme, Oliver J; Skov, Martin; Chadwick, Martin J; Siebner, Hartwig R; Ramsøy, Thomas Z

    Intelligent action entails exploiting predictions about associations between elements of ones environment. The hippocampus and mediotemporal cortex are endowed with the network topology, physiology, and neurochemistry to automatically and sparsely code sensori-cognitive associations that can be...... reconstructed from single or partial inputs. Whilst acquiring fMRI data and performing an attentional task, participants were incidentally presented with a sequence of cartoon images. By assigning subjects a post-scan free-association task on the same images we assayed the density of associations triggered by...... evidence for the sparse encoding of associative density. In the absence of reportability or attentional confounds, this charts a distribution of visual associative representations within hippocampal populations and their temporal lobe afferent fields, and demonstrates the viability of retrospective...

  19. Superconducting magnetic Wollaston prism for neutron spin encoding

    International Nuclear Information System (INIS)

    A magnetic Wollaston prism can spatially split a polarized neutron beam into two beams with different neutron spin states, in a manner analogous to an optical Wollaston prism. Such a Wollaston prism can be used to encode the trajectory of neutrons into the Larmor phase associated with their spin degree of freedom. This encoding can be used for neutron phase-contrast radiography and in spin echo scattering angle measurement (SESAME). In this paper, we show that magnetic Wollaston prisms with highly uniform magnetic fields and low Larmor phase aberration can be constructed to preserve neutron polarization using high temperature superconducting (HTS) materials. The Meissner effect of HTS films is used to confine magnetic fields produced electromagnetically by current-carrying HTS tape wound on suitably shaped soft iron pole pieces. The device is cooled to ∼30 K by a closed cycle refrigerator, eliminating the need to replenish liquid cryogens and greatly simplifying operation and maintenance. A HTS film ensures that the magnetic field transition within the prism is sharp, well-defined, and planar due to the Meissner effect. The spin transport efficiency across the device was measured to be ∼98.5% independent of neutron wavelength and energizing current. The position-dependent Larmor phase of neutron spins was measured at the NIST Center for Neutron Research facility and found to agree well with detailed simulations. The phase varies linearly with horizontal position, as required, and the neutron beam shows little depolarization. Consequently, the device has advantages over existing devices with similar functionality and provides the capability for a large neutron beam (20 mm × 30 mm) and an increase in length scales accessible to SESAME to beyond 10 μm. With further improvements of the external coupling guide field in the prototype device, a larger neutron beam could be employed

  20. Bacteriophage-encoded shiga toxin gene in atypical bacterial host

    Directory of Open Access Journals (Sweden)

    Casas Veronica

    2011-07-01

    Full Text Available Abstract Background Contamination from fecal bacteria in recreational waters is a major health concern since bacteria capable of causing human disease can be found in animal feces. The Dog Beach area of Ocean Beach in San Diego, California is a beach prone to closures due to high levels of fecal indicator bacteria (FIB. A potential source of these FIB could be the canine feces left behind by owners who do not clean up after their pets. We tested this hypothesis by screening the DNA isolated from canine feces for the bacteriophage-encoded stx gene normally found in the virulent strains of the fecal bacterium Escherichia coli. Results Twenty canine fecal samples were collected, processed for total and bacterial fraction DNA, and screened by PCR for the stx gene. The stx gene was detected in the total and bacterial fraction DNA of one fecal sample. Bacterial isolates were then cultivated from the stx-positive fecal sample. Eighty nine of these canine fecal bacterial isolates were screened by PCR for the stx gene. The stx gene was detected in five of these isolates. Sequencing and phylogenetic analyses of 16S rRNA gene PCR products from the canine fecal bacterial isolates indicated that they were Enterococcus and not E. coli. Conclusions The bacteriophage-encoded stx gene was found in multiple species of bacteria cultivated from canine fecal samples gathered at the shoreline of the Dog Beach area of Ocean Beach in San Diego, California. The canine fecal bacteria carrying the stx gene were not the typical E. coli host and were instead identified through phylogenetic analyses as Enterococcus. This suggests a large degree of horizontal gene transfer of exotoxin genes in recreational waters.

  1. Artificial theta stimulation impairs encoding of contextual fear memory.

    Directory of Open Access Journals (Sweden)

    Arto Lipponen

    Full Text Available Several experiments have demonstrated an intimate relationship between hippocampal theta rhythm (4-12 Hz and memory. Lesioning the medial septum or fimbria-fornix, a fiber track connecting the hippocampus and the medial septum, abolishes the theta rhythm and results in a severe impairment in declarative memory. To assess whether there is a causal relationship between hippocampal theta and memory formation we investigated whether restoration of hippocampal theta by electrical stimulation during the encoding phase also restores fimbria-fornix lesion induced memory deficit in rats in the fear conditioning paradigm. Male Wistar rats underwent sham or fimbria-fornix lesion operation. Stimulation electrodes were implanted in the ventral hippocampal commissure and recording electrodes in the septal hippocampus. Artificial theta stimulation of 8 Hz was delivered during 3-min free exploration of the test cage in half of the rats before aversive conditioning with three foot shocks during 2 min. Memory was assessed by total freezing time in the same environment 24 h and 28 h after fear conditioning, and in an intervening test session in a different context. As expected, fimbria-fornix lesion impaired fear memory and dramatically attenuated hippocampal theta power. Artificial theta stimulation produced continuous theta oscillations that were almost similar to endogenous theta rhythm in amplitude and frequency. However, contrary to our predictions, artificial theta stimulation impaired conditioned fear response in both sham and fimbria-fornix lesioned animals. These data suggest that restoration of theta oscillation per se is not sufficient to support memory encoding after fimbria-fornix lesion and that universal theta oscillation in the hippocampus with a fixed frequency may actually impair memory.

  2. Bubble masks for time-encoded imaging of fast neutrons.

    Energy Technology Data Exchange (ETDEWEB)

    Brubaker, Erik; Brennan, James S.; Marleau, Peter; Nowack, Aaron B.; Steele, John; Sweany, Melinda; Throckmorton, Daniel J.

    2013-09-01

    Time-encoded imaging is an approach to directional radiation detection that is being developed at SNL with a focus on fast neutron directional detection. In this technique, a time modulation of a detected neutron signal is induced-typically, a moving mask that attenuates neutrons with a time structure that depends on the source position. An important challenge in time-encoded imaging is to develop high-resolution two-dimensional imaging capabilities; building a mechanically moving high-resolution mask presents challenges both theoretical and technical. We have investigated an alternative to mechanical masks that replaces the solid mask with a liquid such as mineral oil. Instead of fixed blocks of solid material that move in pre-defined patterns, the oil is contained in tubing structures, and carefully introduced air gaps-bubbles-propagate through the tubing, generating moving patterns of oil mask elements and air apertures. Compared to current moving-mask techniques, the bubble mask is simple, since mechanical motion is replaced by gravity-driven bubble propagation; it is flexible, since arbitrary bubble patterns can be generated by a software-controlled valve actuator; and it is potentially high performance, since the tubing and bubble size can be tuned for high-resolution imaging requirements. We have built and tested various single-tube mask elements, and will present results on bubble introduction and propagation as a function of tubing size and cross-sectional shape; real-time bubble position tracking; neutron source imaging tests; and reconstruction techniques demonstrated on simple test data as well as a simulated full detector system.

  3. Hexagonal pixel detector with time encoded binary readout

    International Nuclear Information System (INIS)

    The University of Hawaii is developing continuous acquisition pixel (CAP) detectors for vertexing applications in lepton colliding experiments such as SuperBelle or ILC. In parallel to the investigation of different technology options such as MAPS or SOI, both analog and binary readout concepts have been tested. First results with a binary readout scheme in which the hit information is time encoded by means of a signal shifting mechanism have recently been published. This paper explains the hit reconstruction for such a binary detector with an emphasis on fake hit reconstruction probabilities in order to evaluate the rate capability in a high background environment such as the planned SuperB factory at KEK. The results show that the binary concept is at least comparable to any analog readout strategy if not better in terms of occupancy. Furthermore, we present a completely new binary readout strategy in which the pixel cells are arranged in a hexagonal grid allowing the use of three independent output directions to reduce reconstruction ambiguities. The new concept uses the same signal shifting mechanism for time encoding, however, in dedicated transfer lines on the periphery of the detector, which enables higher shifting frequencies. Detailed Monte Carlo simulations of full size pixel matrices including hit and BG generation, signal generation, and data reconstruction show that by means of multiple signal transfer lines on the periphery the pixel can be made smaller (higher resolution), the number of output channels and the data volume per triggered event can be reduced dramatically, fake hit reconstruction is lowered to a minimum and the resulting effective occupancies are less than 10-4. A prototype detector has been designed in the AMS 0.35μm Opto process and is currently under fabrication.

  4. Encoding individuals in language using syntax, words, and pragmatic inference.

    Science.gov (United States)

    Srinivasan, Mahesh; Barner, David

    2016-09-01

    How does linguistic structure relate to how we construe reality? In many languages, countable individuals like objects are typically labeled by count nouns (e.g., two rabbits, every truck, etc.), while unindividuated masses like substances are typically labeled by mass nouns (e.g., much mud, barrel of oil, etc.) (Quine WVO. Word and Object. Cambridge, MA: MIT Press; 1960). These facts have led researchers to propose that learning mass-count syntax affects how speakers perceive objects and substances or alternatively that an understanding of this distinction-or one between individuals and nonindividuals-scaffolds the acquisition of mass and count nouns. Here, we evaluate these ideas and describe how recent developments in the literature have fundamentally changed our understanding of the mass-count distinction and how it relates to individuation. Across three sections, we show that a simple distinction between countable individuals and nonindividuals cannot provide a foundation for the mass-count distinction (e.g., because many mass nouns like furniture and luggage can denote individuals). Furthermore, we show that mass-count syntax does not shape whether items are construed as individuals or not, but instead allows speakers to select from a set of universally available meanings (e.g., because speakers of all languages quantify objects and substances similarly). We argue that a complete understanding of how mass-count syntax encodes reality requires understanding how different aspects of language-syntax, lexical roots, word meanings, and pragmatic inference-interact to encode abstract, countable individuals. WIREs Cogn Sci 2016, 7:341-353. doi: 10.1002/wcs.1396 For further resources related to this article, please visit the WIREs website. PMID:27306281

  5. A 10 Gbit/s OCDMA system based on electric encoding and optical transmission

    Science.gov (United States)

    Li, Chuan-qi; Hu, Jin-lin; He, Dong-dong; Chen, Mei-juan; Wang, Da-chi; Chen, Yan

    2013-11-01

    An electric encoded/optical transmission system of code division multiple access (CDMA) is proposed. It encodes the user signal in electric domain, and transfers the different code slice signals via the different wavelengths of light. This electric domain encoder/decoder is compared with current traditional encoder/decoder. Four-user modulation/demodulation optical CDMA (OCDMA) system with rate of 2.5 Gbit/s is simulated, which is based on the optical orthogonal code (OCC) designed in our laboratory. The results show that the structure of electric encoding/optical transmission can encode/decode signal correctly, and can achieve the chip rate equal to the user data rate. It can overcome the rate limitation of electronic bottleneck, and bring some potential applications in the electro-optical OCDMA system.

  6. On the absolute encoders%论绝对编码器

    Institute of Scientific and Technical Information of China (English)

    龚仲华

    2011-01-01

    This article illustrates the features of incremental encoder, resolver, absolute-value encoder, absolute encoder, grating encoder and magnetic grid encoder used on CNC machine tools, and their differences are explained as well, then points out the essence of the absolute rotary encoder and introduces the output method and interface for absolute positions.%说明了数控机床所使用的增量编码器、旋转变压器、绝对值编码器、绝对编码器以及光栅编码器与磁栅编码器的特点与区别,指出了绝对编码器的本质,介绍了绝对位置输出的方式与接口。

  7. Binary Encodings of Non-binary Constraint Satisfaction Problems: Algorithms and Experimental Results

    CERN Document Server

    Samaras, N; 10.1613/jair.1776

    2011-01-01

    A non-binary Constraint Satisfaction Problem (CSP) can be solved directly using extended versions of binary techniques. Alternatively, the non-binary problem can be translated into an equivalent binary one. In this case, it is generally accepted that the translated problem can be solved by applying well-established techniques for binary CSPs. In this paper we evaluate the applicability of the latter approach. We demonstrate that the use of standard techniques for binary CSPs in the encodings of non-binary problems is problematic and results in models that are very rarely competitive with the non-binary representation. To overcome this, we propose specialized arc consistency and search algorithms for binary encodings, and we evaluate them theoretically and empirically. We consider three binary representations; the hidden variable encoding, the dual encoding, and the double encoding. Theoretical and empirical results show that, for certain classes of non-binary constraints, binary encodings are a competitive op...

  8. A Functional Hitchhiker's Guide to Hereditarily Finite Sets, Ackermann Encodings and Pairing Functions

    CERN Document Server

    Tarau, Paul

    2008-01-01

    The paper is organized as a self-contained literate Haskell program that implements elements of an executable finite set theory with focus on combinatorial generation and arithmetic encodings. The code, tested under GHC 6.6.1, is available at http://logic.csci.unt.edu/tarau/research/2008/fSET.zip . We introduce ranking and unranking functions generalizing Ackermann's encoding to the universe of Hereditarily Finite Sets with Urelements. Then we build a lazy enumerator for Hereditarily Finite Sets with Urelements that matches the unranking function provided by the inverse of Ackermann's encoding and we describe functors between them resulting in arithmetic encodings for powersets, hypergraphs, ordinals and choice functions. After implementing a digraph representation of Hereditarily Finite Sets we define {\\em decoration functions} that can recover well-founded sets from encodings of their associated acyclic digraphs. We conclude with an encoding of arbitrary digraphs and discuss a concept of duality induced by ...

  9. Security Authentication using Phase-Encoded Nanoparticle Structures and Polarized Light

    OpenAIRE

    Carnicer González, Arturo; Hassanfiroozi, Amir; Latorre-Carmona, Pedro; Huang, Yi-Pai; Javidi, Bahram

    2015-01-01

    Phase encoded nano structures such as Quick Response (QR) codes made of metallic nanoparticles are suggested to be used in security and authentication applications. We present a polarimetric optical method able to authenticate random phase encoded QR codes. The system is illuminated using polarized light and the QR code is encoded using a phase-only random mask. Using classification algorithms it is possible to validate the QR code from the examination of the polarimetric signature of the spe...

  10. Encoding-related EEG oscillations during memory formation are modulated by mood state

    OpenAIRE

    Gärtner, Matti; Bajbouj, Malek

    2014-01-01

    Mood states have a strong impact on how we process incoming information. It has been proposed that positive mood facilitates elaborative, relational encoding, whereas negative mood promotes a more careful, stimulus-driven encoding style. Previous electrophysiological studies have linked successful information encoding to power increases in slow (30 Hz) gamma oscillations, as well as to power decreases in midrange (8–30 Hz) alpha/beta oscillations. Whether different mood states modulate encodi...

  11. Leveraging Sentence-level Information with Encoder LSTM for Natural Language Understanding

    OpenAIRE

    Kurata, Gakuto; Xiang, Bing; Zhou, Bowen; Yu, Mo

    2016-01-01

    Recurrent Neural Network (RNN) and one of its specific architectures, Long Short-Term Memory (LSTM), have been widely used for sequence labeling. In this paper, we first enhance LSTM-based sequence labeling to explicitly model label dependencies. Then we propose another enhancement to incorporate the global information spanning over the whole input sequence. The latter proposed method, encoder-labeler LSTM, first encodes the whole input sequence into a fixed length vector with the encoder LST...

  12. Dual Role of Medial A10 Dopamine Neurons in Affective Encoding

    OpenAIRE

    Liu, Zhong-Hua; Shin, Rick; Ikemoto, Satoshi

    2008-01-01

    Increasing evidence suggests that the activation of medial A10 neurons mediates positive affective encoding. However, little is known about the functions of the inhibition of midbrain dopamine neurons. Here we show evidence suggesting that the inhibition of medial A10 neurons mediates a negative affective state, leading to negative affective encoding, whereas blunting the activation of medial A10 neurons disrupts positive affective encoding involving food reward. We used a microinjection proc...

  13. Cloning of cDNA Encoding GRA1 Protein of Tachyzoite Toxoplasma Gondii Local Isolate

    OpenAIRE

    Erma Sulistyaningsih; Sukarti Moeljopawiro; Jarot Subandono; Wayan T. Artama

    2015-01-01

    Gene encoding GRA1 protein is potent DNA-vaccine candidate against toxoplasmosis. The aim of the researchwas to clone the gene encoding GRA1 protein of tachyzoite Toxoplasma gondii local isolate by DNA recombinanttechnology. Tachyzoite was grown in Balb/c mice in vivo. Messenger RNA was isolated from total RNA and itwas used to synthesis cDNA. Complementary DNA encoding GRA1 protein of tachyzoite Toxoplasma gondii localisolate was amplified and cloned in a prokaryote cloning vector. The recom...

  14. What Regularized Auto-Encoders Learn from the Data Generating Distribution

    OpenAIRE

    Alain, Guillaume; Bengio, Yoshua

    2012-01-01

    What do auto-encoders learn about the underlying data generating distribution? Recent work suggests that some auto-encoder variants do a good job of capturing the local manifold structure of data. This paper clarifies some of these previous observations by showing that minimizing a particular form of regularized reconstruction error yields a reconstruction function that locally characterizes the shape of the data generating density. We show that the auto-encoder captures the score (derivative...

  15. Dual beam encoded extended fractional Fourier transform security hologram with in-built repositioning

    Indian Academy of Sciences (India)

    Amit K Sharma; D P Chhachhia; D Mohan; A K Aggarwal

    2008-01-01

    This paper describes a simple method for making dual beam encoded extended fractional Fourier transform (EFRT) security holograms. The hologram possesses different stages of encoding so that security features are concealed and remain invisible to the counterfeiter. These concealed and encoded anticounterfeit security features in the security hologram can only be read through a key hologram. Key hologram also facilitates in-built repositioning of security hologram. The method of fabrication, the principle of reconstruction and the experimental results are presented.

  16. Processing and display of medical three dimensional array of numerical data using octree encoding

    International Nuclear Information System (INIS)

    Imaging modalities such as X-ray computerized tomography (CT), nuclear medicine and nuclear magnetic resonance can produce three-dimensional (3-D) array of numerical data of internal structure of medical objects. The OCTREE encoding technique, a related hierarchical data structure, allows efficient processing and display of encoded objects. The application of the OCTREE encoding scheme to the display of 3-D medical images generated from multiple CT scan is presented

  17. Results from laboratory tests of the two-dimensional Time-Encoded Imaging System.

    Energy Technology Data Exchange (ETDEWEB)

    Marleau, Peter; Brennan, James S.; Brubaker, Erik; Gerling, Mark D; Le Galloudec, Nathalie Joelle

    2014-09-01

    A series of laboratory experiments were undertaken to demonstrate the feasibility of two dimensional time-encoded imaging. A prototype two-dimensional time encoded imaging system was designed and constructed. Results from imaging measurements of single and multiple point sources as well as extended source distributions are presented. Time encoded imaging has proven to be a simple method for achieving high resolution two-dimensional imaging with potential to be used in future arms control and treaty verification applications.

  18. What Goes Down Must Come Up: Role of the Posteromedial Cortices in Encoding and Retrieval

    OpenAIRE

    Vannini, P; O'Brien, J; O'Keefe, K.; Pihlajamäki, M.; Laviolette, P.; Sperling, R. A.

    2010-01-01

    The hypothesis that the neural network supporting successful episodic memory retrieval overlaps with the regions involved in episodic encoding has garnered much interest; however, the role of the posteromedial regions remains to be fully elucidated. Functional magnetic resonance imaging (fMRI) studies during successful encoding typically demonstrate deactivation of posteromedial cortices, whereas successful retrieval of previously encoded information has been associated with activation of the...

  19. Rejection-free stochastic simulation of BNGL-encoded models

    Energy Technology Data Exchange (ETDEWEB)

    Hlavacek, William S [Los Alamos National Laboratory; Monine, Michael I [Los Alamos National Laboratory; Colvin, Joshua [TRANSLATIONAL GENOM; Posner, Richard G [NORTHERN ARIZONA UNIV.; Von Hoff, Daniel D [TRANSLATIONAL GENOMICS RESEARCH INSTIT.

    2009-01-01

    Formal rules encoded using the BioNetGen language (BNGL) can be used to represent the system-level dynamics of molecular interactions. Rules allow one to compactly and implicitly specify the reaction network implied by a set of molecules and their interactions. Typically, the reaction network implied by a set of rules is large, which makes generation of the underlying rule-defined network expensive. Moreover, the cost of conventional simulation methods typically depends on network size. Together these factors have limited application of the rule-based modeling approach. To overcome this limitation, several methods have recently been developed for determining the reaction dynamics implied by rules while avoiding the expensive step of network generation. The cost of these 'network-free' simulation methods is independent of the number of reactions implied by rules. Software implementing such methods is needed for the analysis of rule-based models of biochemical systems. Here, we present a software tool called RuleMonkey that implements a network-free stochastic simulation method for rule-based models. The method is rejection free, unlike other network-free methods that introduce null events (i.e., steps in the simulation procedure that do not change the state of the reaction system being simulated), and the software is capable of simulating models encoded in BNGL, a general-purpose model-specification language. We verify that RuleMonkey produces correct simulation results, and we compare its performance against DYNSTOC, another BNGL-compliant general-purpose simulator for rule-based models, as well as various problem-specific codes that implement network-free simulation methods. RuleMonkey enables the simulation of models defined by rule sets that imply large-scale reaction networks. It is faster than DYNSTOC for stiff problems, although it requires the use of more computer memory. RuleMonkey is freely available for non-commercial use as a stand

  20. Drug-Encoded Biomarkers for Monitoring Biological Therapies.

    Science.gov (United States)

    Tsoneva, Desislava; Stritzker, Jochen; Bedenk, Kristina; Zhang, Qian; Frentzen, Alexa; Cappello, Joseph; Fischer, Utz; Szalay, Aladar A

    2015-01-01

    Blood tests are necessary, easy-to-perform and low-cost alternatives for monitoring of oncolytic virotherapy and other biological therapies in translational research. Here we assessed three candidate proteins with the potential to be used as biomarkers in biological fluids: two glucuronidases from E. coli (GusA) and Staphylococcus sp. RLH1 (GusPlus), and the luciferase from Gaussia princeps (GLuc). The three genes encoding these proteins were inserted individually into vaccinia virus GLV-1h68 genome under the control of an identical promoter. The three resulting recombinant viruses were used to infect tumor cells in cultures and human tumor xenografts in nude mice. In contrast to the actively secreted GLuc, the cytoplasmic glucuronidases GusA and GusPlus were released into the supernatants only as a result of virus-mediated oncolysis. GusPlus resulted in the most sensitive detection of enzyme activity under controlled assay conditions in samples containing as little as 1 pg/ml of GusPlus, followed by GusA (25 pg/ml) and GLuc (≥375 pg/ml). Unexpectedly, even though GusA had a lower specific activity compared to GusPlus, the substrate conversion in the serum of tumor-bearing mice injected with the GusA-encoding virus strains was substantially higher than that of GusPlus. This was attributed to a 3.2 fold and 16.2 fold longer half-life of GusA in the blood stream compared to GusPlus and GLuc respectively, thus a more sensitive monitor of virus replication than the other two enzymes. Due to the good correlation between enzymatic activity of expressed marker gene and virus titer, we conclude that the amount of the biomarker protein in the body fluid semiquantitatively represents the amount of virus in the infected tumors which was confirmed by low light imaging. We found GusA to be the most reliable biomarker for monitoring oncolytic virotherapy among the three tested markers. PMID:26348361

  1. Polymeric Optical Code-Division Multiple-Access (CDMA Encoder and Decoder Modules

    Directory of Open Access Journals (Sweden)

    Ray T. Chen

    2011-09-01

    Full Text Available We propose a low cost polymeric optical waveguides-based optical CDMA encoder and decoder modules. The structures of the optical CDMA encoder and decoder modules are presented. The performance of the optical CDMA encoder and decoder modules is simulated using 10-chip binary phase-shift keying (BPSK coding schemes. The optical CDMA encoder and decoder modules can effectively transmit and recover optical CDMA data streams. The SNR of the received signal is analyzed and determined to be primarily from the cross correlation with other channels.

  2. Suppressors of RNA silencing encoded by tomato leaf curl betasatellites

    Indian Academy of Sciences (India)

    Richa Shukla; Sunita Dalal; V G Malathi

    2013-03-01

    Virus encoded RNA-silencing suppressors (RSSs) are the key components evolved by the viruses to counter RNA-silencing defense of plants. Whitefly-transmitted begomoviruses infecting tomato crop code for five different proteins, ORF AC4, ORF AC2 and ORF AV2 in DNA-A component, ORF BV1 in DNA-B and ORF C1 in satellite DNA which are predicted to function as silencing suppressors. In the present study suppressor function of ORF C1 of three betasatellites Tomato leaf curl Bangalore betasatellite ToLCBB-[IN:Hess:08], Cotton leaf curl Multan betasatellite CLCuMB–[IN:Sri:02] and Luffa leaf distortion betasatellite LuLDB-[IN:Lu:04] were examined. Agroinfiltration of GFP-silenced Nicotiana tabaccum cv. Xanthi with the cells expressing C1 protein resulted in reversal of silenced GFP expression. GFP-siRNA level was more than 50-fold lower compared to silenced plants in plants infiltrated with C1 gene from ToLCBB. However, in the case of 35S-C1 CLCuMB and 35S-C1 LuLDB construct, although GFP was expressed, siRNA level was not reduced, indicating that the step at which C1 interfere in RNA-silencing pathway is different.

  3. FORMALIZATION OF LANGUAGE AS ENCODING OF IDEAS ABOUT THE WORLD

    Directory of Open Access Journals (Sweden)

    Irina Mikhaylovna Nekipelova

    2013-12-01

    Full Text Available The article is devoted to researching of formalization of language, which is viewed as the main way of natural and artificial encoding by human and society of conceptions and knowledge about the world. Formalization is been due to realization in human's mind such logic operation as synthesis and analysis. Realization of these processes need first of all for expression of human's thoughts within the bounds of subjective (private language and standardization of objective (general language. As a result of the realized research the fact that all significant conceptions about the world are fixed for language constant in language system (constants are related by regulated rules of handling has been revealed. In whole, there are many algorithms, which ensure work of language and lay a main way for deployment of language rules. There are no universal algorithms. Therefore any consistent formalization of theory is in essence incomplete. Although language is not only something that present in language actually, but something that present in language potential. Only material expressed constants and assertions can be formalized. DOI: http://dx.doi.org/10.12731/2218-7405-2013-8-51

  4. Millisecond-Scale Motor Encoding in a Cortical Vocal Area

    Science.gov (United States)

    Nemenman, Ilya; Tang, Claire; Chehayeb, Diala; Srivastava, Kyle; Sober, Samuel

    2015-03-01

    Studies of motor control have almost universally examined firing rates to investigate how the brain shapes behavior. In principle, however, neurons could encode information through the precise temporal patterning of their spike trains as well as (or instead of) through their firing rates. Although the importance of spike timing has been demonstrated in sensory systems, it is largely unknown whether timing differences in motor areas could affect behavior. We tested the hypothesis that significant information about trial-by-trial variations in behavior is represented by spike timing in the songbird vocal motor system. We found that neurons in motor cortex convey information via spike timing far more often than via spike rate and that the amount of information conveyed at the millisecond timescale greatly exceeds the information available from spike counts. These results demonstrate that information can be represented by spike timing in motor circuits and suggest that timing variations evoke differences in behavior. This work was supported in part by the National Institutes of Health, National Science Foundation, and James S. McDonnell Foundation

  5. Development of Deduced Protein Database Using Variable Bit Binary Encoding

    Directory of Open Access Journals (Sweden)

    B. Parvathavarthini

    2008-01-01

    Full Text Available A large amount of biological data is semi-structured and stored in any one the following file formats such as flat, XML and relational files. These databases must be integrated with the structured data available in relational or object-oriented databases. The sequence matching process is difficult in such file format, because string comparison takes more computation cost and time. To reduce the memory storage size of amino acid sequence in protein database, a novel probability-based variable bit length encoding technique has been introduced. The number of mapping of triplet CODON for every amino acid evaluates the probability value. Then, a binary tree has been constructed to assign unique bits of binary codes to each amino acid. This derived unique bit pattern of amino acid replaces the existing fixed byte representation. The proof of reduced protein database space has been discussed and it is found to be reduced between 42.86 to 87.17%. To validate our method, we have collected few amino acid sequences of major organisms like Sheep, Lambda phage and etc from NCBI and represented them using proposed method. The comparison shows that of minimum and maximum reduction in storage space are 43.30% and 72.86% respectively. In future the biological data can further be reduced by applying lossless compression on this deduced data.

  6. Encoding and analyzing aerial imagery using geospatial semantic graphs

    Energy Technology Data Exchange (ETDEWEB)

    Watson, Jean-Paul; Strip, David R.; McLendon, William Clarence,; Parekh, Ojas D.; Diegert, Carl F.; Martin, Shawn Bryan; Rintoul, Mark Daniel

    2014-02-01

    While collection capabilities have yielded an ever-increasing volume of aerial imagery, analytic techniques for identifying patterns in and extracting relevant information from this data have seriously lagged. The vast majority of imagery is never examined, due to a combination of the limited bandwidth of human analysts and limitations of existing analysis tools. In this report, we describe an alternative, novel approach to both encoding and analyzing aerial imagery, using the concept of a geospatial semantic graph. The advantages of our approach are twofold. First, intuitive templates can be easily specified in terms of the domain language in which an analyst converses. These templates can be used to automatically and efficiently search large graph databases, for specific patterns of interest. Second, unsupervised machine learning techniques can be applied to automatically identify patterns in the graph databases, exposing recurring motifs in imagery. We illustrate our approach using real-world data for Anne Arundel County, Maryland, and compare the performance of our approach to that of an expert human analyst.

  7. Influence of TFT-LCD Pixels Structure on Holographic Encoding

    Science.gov (United States)

    Hongjun, Wang; Ailing, Tian; Bingcai, Liu; Chunhui, Wang

    The LCD is proposed as a new hologram loader with the advantage that the hologram image is controlled digitally with no any mechanical moving and rotating elements. Different hologram image can be readily introduced by changing the coded image displayed on the LCD. A basic problem in which LCD is a hologram image loader is limited LCD's pixel number. In CGH, the sample point number have great impact on holographic representation. So the choice of sample point number is very important. When the LCD is phase hologram image loader, the phase on hologram image was decided by phase distribution of recorded wavefront on LCD plane. In phase hologram encoding, the pixel spacing is sampling interval of recorded wavefront. Based on sampling theory, the frequency band can be obtained by spectrum analysis. For different wavefront shape, A model was developed for phase rate, the spectrum distribution was got, the phase rate which can be recorded by LCD can be got. A didactic example is included to illustrate the computational procedure.

  8. Remotely operated compact underwater temporally encoded imager: CUTEI

    Science.gov (United States)

    Alley, Derek; Cochenour, Brandon; Mullen, Linda

    2016-05-01

    Remotely operated vehicles (ROVs) typically use traditional optical imaging systems, such as cameras, for high resolution imaging. Cameras are effective in clear water, but have extremely poor performance in degraded visual environments (DVEs) such as turbid coastal waters and harbors. This is due to the multiple scattering of the light from the particulates and organic matter in the water. Laser-based sensors have been developed to enhance optical imaging in DVEs1,3,4,5,6. However, since conventional approaches require that the illuminator and receiver be located on the same platform, the size, weight, and power (SWaP) requirements are incompatible with small ROVs. Researchers at NAVAIR have developed a low cost optical imager utilizing a bistatic geometry where the illuminator and receiver are mounted on separate, smaller platforms. The illuminator steers a modulated laser beam with a microelectromechanical system (MEMS) scanner to sequentially illuminate an underwater object. A distant receiver collects the object reflected laser light and reconstructs the imagery. Communications information, including a synchronization sequence, is encoded onto the modulation which is used by the receiver to build the image. The SWaP of the illuminator's components have been optimized and integrated into a modified version of the OpenROV, a miniature, commercial off-the-shelf ROV. This paper reports on the efforts to reduce the SWaP of the modulated illuminator and the results of testing this system in a laboratory water tank environment.

  9. Head movements encode emotions during speech and song.

    Science.gov (United States)

    Livingstone, Steven R; Palmer, Caroline

    2016-04-01

    When speaking or singing, vocalists often move their heads in an expressive fashion, yet the influence of emotion on vocalists' head motion is unknown. Using a comparative speech/song task, we examined whether vocalists' intended emotions influence head movements and whether those movements influence the perceived emotion. In Experiment 1, vocalists were recorded with motion capture while speaking and singing each statement with different emotional intentions (very happy, happy, neutral, sad, very sad). Functional data analyses showed that head movements differed in translational and rotational displacement across emotional intentions, yet were similar across speech and song, transcending differences in F0 (varied freely in speech, fixed in song) and lexical variability. Head motion specific to emotional state occurred before and after vocalizations, as well as during sound production, confirming that some aspects of movement were not simply a by-product of sound production. In Experiment 2, observers accurately identified vocalists' intended emotion on the basis of silent, face-occluded videos of head movements during speech and song. These results provide the first evidence that head movements encode a vocalist's emotional intent and that observers decode emotional information from these movements. We discuss implications for models of head motion during vocalizations and applied outcomes in social robotics and automated emotion recognition. PMID:26501928

  10. Co-transcriptional folding is encoded within RNA genes

    Directory of Open Access Journals (Sweden)

    Miklós István

    2004-08-01

    Full Text Available Abstract Background Most of the existing RNA structure prediction programs fold a completely synthesized RNA molecule. However, within the cell, RNA molecules emerge sequentially during the directed process of transcription. Dedicated experiments with individual RNA molecules have shown that RNA folds while it is being transcribed and that its correct folding can also depend on the proper speed of transcription. Methods The main aim of this work is to study if and how co-transcriptional folding is encoded within the primary and secondary structure of RNA genes. In order to achieve this, we study the known primary and secondary structures of a comprehensive data set of 361 RNA genes as well as a set of 48 RNA sequences that are known to differ from the originally transcribed sequence units. We detect co-transcriptional folding by defining two measures of directedness which quantify the extend of asymmetry between alternative helices that lie 5' and those that lie 3' of the known helices with which they compete. Results We show with statistical significance that co-transcriptional folding strongly influences RNA sequences in two ways: (1 alternative helices that would compete with the formation of the functional structure during co-transcriptional folding are suppressed and (2 the formation of transient structures which may serve as guidelines for the co-transcriptional folding pathway is encouraged. Conclusions These findings have a number of implications for RNA secondary structure prediction methods and the detection of RNA genes.

  11. Mnemons: encoding memory by protein super-assembly

    Directory of Open Access Journals (Sweden)

    Fabrice Caudron

    2015-02-01

    Full Text Available Memory is mainly understood as the recollection of past events. The human brain and its simplest unit, the synapse, belong to the places in which such memories are physically stored. From an experimental point of view, memory can be tested in humans by recall. However, in other organisms, memory is reflected in its use by individuals to learn about and adapt their behavior to their environment. Under this criterion, even unicellular organisms are able to learn from their environments and show the ability to adapt their responses to repeating stimuli. This indicates that they are able to keep track of their histories and use these traces to elaborate adapted responses, making these traces akin to memory encodings. Understanding these phenomena may even help us to dissect part of the rather complex molecular orchestration happening in our synapses. When exposed unsuccessfully to mating pheromone, i.e. when mating does not happen, budding yeast cells become refractory to the mating signal. This refractory state is restricted to the mother cell and not inherited by the daughter cells, even though it is stable for most if not the entire life span of the mother cell. Interestingly, both stability and asymmetric segregation of the acquired state are explained by the molecular mechanism underlying its establishment, which shows important analogies and distinctions to prions. Here we discuss these similarities and differences

  12. Encoding of event timing in the phase of neural oscillations.

    Science.gov (United States)

    Kösem, Anne; Gramfort, Alexandre; van Wassenhove, Virginie

    2014-05-15

    Time perception is a critical component of conscious experience. To be in synchrony with the environment, the brain must deal not only with differences in the speed of light and sound but also with its computational and neural transmission delays. Here, we asked whether the brain could actively compensate for temporal delays by changing its processing time. Specifically, can changes in neural timing or in the phase of neural oscillation index perceived timing? For this, a lag-adaptation paradigm was used to manipulate participants' perceived audiovisual (AV) simultaneity of events while they were recorded with magnetoencephalography (MEG). Desynchronized AV stimuli were presented rhythmically to elicit a robust 1 Hz frequency-tagging of auditory and visual cortical responses. As participants' perception of AV simultaneity shifted, systematic changes in the phase of entrained neural oscillations were observed. This suggests that neural entrainment is not a passive response and that the entrained neural oscillation shifts in time. Crucially, our results indicate that shifts in neural timing in auditory cortices linearly map participants' perceived AV simultaneity. To our knowledge, these results provide the first mechanistic evidence for active neural compensation in the encoding of sensory event timing in support of the emergence of time awareness. PMID:24531044

  13. Minimized state complexity of quantum-encoded cryptic processes

    Science.gov (United States)

    Riechers, Paul M.; Mahoney, John R.; Aghamohammadi, Cina; Crutchfield, James P.

    2016-05-01

    The predictive information required for proper trajectory sampling of a stochastic process can be more efficiently transmitted via a quantum channel than a classical one. This recent discovery allows quantum information processing to drastically reduce the memory necessary to simulate complex classical stochastic processes. It also points to a new perspective on the intrinsic complexity that nature must employ in generating the processes we observe. The quantum advantage increases with codeword length: the length of process sequences used in constructing the quantum communication scheme. In analogy with the classical complexity measure, statistical complexity, we use this reduced communication cost as an entropic measure of state complexity in the quantum representation. Previously difficult to compute, the quantum advantage is expressed here in closed form using spectral decomposition. This allows for efficient numerical computation of the quantum-reduced state complexity at all encoding lengths, including infinite. Additionally, it makes clear how finite-codeword reduction in state complexity is controlled by the classical process's cryptic order, and it allows asymptotic analysis of infinite-cryptic-order processes.

  14. Conventions and nomenclature for double diffusion encoding NMR and MRI.

    Science.gov (United States)

    Shemesh, Noam; Jespersen, Sune N; Alexander, Daniel C; Cohen, Yoram; Drobnjak, Ivana; Dyrby, Tim B; Finsterbusch, Jurgen; Koch, Martin A; Kuder, Tristan; Laun, Fredrik; Lawrenz, Marco; Lundell, Henrik; Mitra, Partha P; Nilsson, Markus; Özarslan, Evren; Topgaard, Daniel; Westin, Carl-Fredrik

    2016-01-01

    Stejskal and Tanner's ingenious pulsed field gradient design from 1965 has made diffusion NMR and MRI the mainstay of most studies seeking to resolve microstructural information in porous systems in general and biological systems in particular. Methods extending beyond Stejskal and Tanner's design, such as double diffusion encoding (DDE) NMR and MRI, may provide novel quantifiable metrics that are less easily inferred from conventional diffusion acquisitions. Despite the growing interest on the topic, the terminology for the pulse sequences, their parameters, and the metrics that can be derived from them remains inconsistent and disparate among groups active in DDE. Here, we present a consensus of those groups on terminology for DDE sequences and associated concepts. Furthermore, the regimes in which DDE metrics appear to provide microstructural information that cannot be achieved using more conventional counterparts (in a model-free fashion) are elucidated. We highlight in particular DDE's potential for determining microscopic diffusion anisotropy and microscopic fractional anisotropy, which offer metrics of microscopic features independent of orientation dispersion and thus provide information complementary to the standard, macroscopic, fractional anisotropy conventionally obtained by diffusion MR. Finally, we discuss future vistas and perspectives for DDE. PMID:26418050

  15. Transmembrane signaling through major histocompatibility complex (MHC) encoded molecules

    International Nuclear Information System (INIS)

    The importance of the major histocompatibility complex (MHC) encoded molecules has traditionally been ascribed to the role these molecules play as restriction elements for T lymphocytes. This is, in order for T cell activation to occur the T cell must recognize antigen in association with MHC molecules. More controversial, however, is the potential role MHC molecules play as signal transducing receptors/acceptors to the B lymphocyte. In other words, do class II MHC molecules (Ia antigens) actively transduce a signal to the B cell which drives its differentiation into an antibody secreting cell? Two approaches to this question are described. The first involves biochemical characterization of those molecules which consistently copurify with I-A/sup k/ by two dimensional gel electrophoresis. The second approach utilizes two types of analyses: first, an examination of the biochemical changes which occur in the cell as a result of Ia ligation; and second, analysis of changes in the B cell's physiological response as a result of Ia perturbation. Molecules were examined which may couple the antigen binding event in the B lymphocyte to the antigen driven signal transduction cascade which ultimately leads to immunoglobulin secretion. In these experiments, cells were labelled with [32P] and stimulated cells with phorbol myristate acetate. The membrane form of immunoglobulin was then isolated from detergent lysates of whole cells and passed over an anti-k affinity column. The eluates were analyzed by SDS-PAGE

  16. Protein Collapse is Encoded in the Folded State Architecture

    CERN Document Server

    Samanta, Himadri S; Hinczewski, Michael; Hori, Naoto; Chakrabarti, Shaon; Thirumalai, D

    2016-01-01

    Natural protein sequences that self-assemble to form globular structures are compact with high packing densities in the folded states. It is known that proteins unfold upon addition of denaturants, adopting random coil structures. The dependence of the radii of gyration on protein size in the folded and unfolded states obeys the same scaling laws as synthetic polymers. Thus, one might surmise that the mechanism of collapse in proteins and polymers ought to be similar. However, because the number of amino acids in single domain proteins is not significantly greater than about two hundred, it has not been resolved if the unfolded states of proteins are compact under conditions that favor the folded states - a problem at the heart of how proteins fold. By adopting a theory used to derive polymer-scaling laws, we find that the propensity for the unfolded state of a protein to be compact is universal and is encoded in the contact map of the folded state. Remarkably, analysis of over 2000 proteins shows that protei...

  17. Wavelength-encoded optical psychrometer for relative humidity measurement

    International Nuclear Information System (INIS)

    In this article an optical psychrometer, in which temperature measurements are performed by means of two fiber Bragg grating sensors used as dry-bulb and wet-bulb thermometers, is introduced. The adopted design exploits both the high accuracy of psychrometric-based relative humidity measurements with acknowledged advantages of wavelength-encoded fiber optic sensing. Important metrological issues that have been addressed in the experimental work include calibration of the fiber Bragg grating temperature sensors, evaluation of response time, sensitivity, hysteresis, linearity, and accuracy. The calibration results give confidence that, with the current experimental setup, measurement of temperature can be done with an uncertainty of ±0.2 deg. C and a resolution of 0.1 deg. C. A detailed uncertainty analysis is also presented in the article to investigate the effects produced by different sources of error on the combined standard uncertainty uc(U) of the relative humidity measurement, which has been estimated to be roughly within ±2% in the range close to saturation

  18. Current View on Phytoplasma Genomes and Encoded Metabolism

    Directory of Open Access Journals (Sweden)

    Michael Kube

    2012-01-01

    Full Text Available Phytoplasmas are specialised bacteria that are obligate parasites of plant phloem tissue and insects. These bacteria have resisted all attempts of cell-free cultivation. Genome research is of particular importance to analyse the genetic endowment of such bacteria. Here we review the gene content of the four completely sequenced ‘Candidatus Phytoplasma’ genomes that include those of ‘Ca. P. asteris’ strains OY-M and AY-WB, ‘Ca. P. australiense,’ and ‘Ca. P. mali’. These genomes are characterized by chromosome condensation resulting in sizes below 900 kb and a G + C content of less than 28%. Evolutionary adaption of the phytoplasmas to nutrient-rich environments resulted in losses of genetic modules and increased host dependency highlighted by the transport systems and limited metabolic repertoire. On the other hand, duplication and integration events enlarged the chromosomes and contribute to genome instability. Present differences in the content of membrane and secreted proteins reflect the host adaptation in the phytoplasma strains. General differences are obvious between different phylogenetic subgroups. ‘Ca. P. mali’ is separated from the other strains by its deviating chromosome organization, the genetic repertoire for recombination and excision repair of nucleotides or the loss of the complete energy-yielding part of the glycolysis. Apart from these differences, comparative analysis exemplified that all four phytoplasmas are likely to encode an alternative pathway to generate pyruvate and ATP.

  19. The Relationship Between Transcript Expression Levels of Nuclear Encoded (TFAM, NRF1) and Mitochondrial Encoded (MT-CO1) Genes in Single Human Oocytes During Oocyte Maturation

    OpenAIRE

    Ghaffari Novin M.; Allahveisi Azra; Noruzinia M; Farhadifar F.; Yousefian E.; Dehghani Fard A.; Salimi M.

    2015-01-01

    In some cases of infertility in women, human oocytes fail to mature when they reach the metaphase II (MII) stage. Mitochondria plays an important role in oocyte maturation. A large number of mitochondrial DNA (mtDNA), copied in oocytes, is essential for providing adenosine triphosphate (ATP) during oocyte maturation. The purpose of this study was to identify the relationship between transcript expression levels of the mitochondrial encoded gene (MT-CO1) and two nuclear encoded genes, nuclear ...

  20. Artificial neural network-based error compensation procedure for low-cost encoders

    International Nuclear Information System (INIS)

    An artificial neural network-based error compensation method is proposed for improving the accuracy of resolver-based 16-bit encoders by compensating for their respective systematic error profiles. The error compensation procedure, for a particular encoder, involves obtaining its error profile by calibrating it on a precision rotary table, training the neural network by using a part of these data and then determining the corrected encoder angle by subtracting the ANN-predicted error from the measured value of the encoder angle. Since it is not guaranteed that all the resolvers will have exactly similar error profiles because of the inherent differences in their construction on a micro scale, the ANN has been trained on one error profile at a time and the corresponding weight file is then used only for compensating the systematic error of this particular encoder. The systematic nature of the error profile for each of the encoders has also been validated by repeated calibration of the encoders over a period of time and it was found that the error profiles of a particular encoder recorded at different epochs show near reproducible behaviour. The ANN-based error compensation procedure has been implemented for four encoders by training the ANN with their respective error profiles and the results indicate that the accuracy of encoders can be improved by nearly an order of magnitude from quoted values of ∼ ±6 arc-min to ∼ ±0.65 arc-min when their corresponding ANN-generated weight files are used for determining the corrected encoder angle

  1. Encoding of Shath on the basis of Rhetoric

    Directory of Open Access Journals (Sweden)

    Ahmad Goli

    2015-04-01

    Full Text Available Abstract "Shath" because of having extended relationship with spiritual experiences, unconsciousness, language and literature, religion and religious experiences, society and cultural circumstances often regarded as complex and sometimes meaningless matters confronting of interpretation. This complexity often is the result of aesthetic and literary language of shathiyat, the influence of unconsciousness mind of Arif (mystic in the quality of shathiyat or the influence of the necessity of reader’s conditions in explanation of shathiyat. While, to extract meanings from sentences including "Shath" naturally one should know Rhetoric and detect implicit meanings because the surface structure of shath may be in contrast with religious and traditional beliefs and ideals. Another reason is that, according to the reason of collection of Balâghat (Rhetoric for better discovery of holy meaning of Quran, the holy and high-level meanings never transfer into the addressee by the words which are restricted to the primary meanings but always a set of literary tools such as Code, Symbol, Kenning, Metaphor, Simile and Trope hides a holy and sublime concept under the layers of words to keep far its superiority and reality from the damage of routine and primary meanings. Also, because of constraints and disagreements with mystic education in the many historical periods, mystics had to implicit their education so that their companions understand and outsiders do not. In fact, the interpretation of types of shathiyat weren’t unrelated to the status and spiritual capacity of addressees (the necessity of addressee. It seems to be impossible expectation that we exactly can understand main meaning and real aim of a Shatah (speaker or writer of "Shath",(of course, there isn’t absolute meaning in realm of literature, but halo of meanings exist that give artistic aspect to literary text as in hermeneutics doesn’t exist one unchangeable meaning. But Rhetoric encodes

  2. A study on information hiding technology in image encoding

    Science.gov (United States)

    Li, Li; Yao, Zhihai; Wu, Haitao; Dai, Qiang

    2005-02-01

    Information hiding is a new technology which integrates with theories and technologies of many academic and technical subjects. For information hiding, digital media are used as the carrier of the information to be hidden. The carrier conceals secret messages by covering the form of their existence. In this paper, we briefly introduce the definition, basic models and basic characters of information hiding. The application and research trends for information hiding system are concerned. The information hiding technology based on digital image processing is closely related to human vision system. When the messages are having been concealed, the human eyes are due to verify the existence of hiding messages. That is, the status of information coverage depends on the human vision system. It is obvious that the characteristics of human vision system is to be taken advantage. The added secrete information in the digital image should have no any effect onto human eyes. In our research work, an implementation of information hiding technology system which is based on digital image encoding is proposed. First by analyzing knowledge of digital image processing and the model of human vision system, we discussed the algorithm of time domain appending method and the algorithm of substitution of lease significant bit. Secondly, we analyzed theory and algorithms of 2-D discrete wavelet transform and frequency domain algorithm based on discrete wavelet transformation. Carefully design software for information hiding based on digital image using Microsoft Visual C++6.0 is implemented. The communication with hiding messages may use any format of images such as BMP. It is proved to be an effective application.

  3. Mobile antibiotic resistance encoding elements promote their own diversity.

    Directory of Open Access Journals (Sweden)

    Geneviève Garriss

    2009-12-01

    Full Text Available Integrating conjugative elements (ICEs are a class of bacterial mobile genetic elements that disseminate via conjugation and then integrate into the host cell genome. The SXT/R391 family of ICEs consists of more than 30 different elements that all share the same integration site in the host chromosome but often encode distinct properties. These elements contribute to the spread of antibiotic resistance genes in several gram-negative bacteria including Vibrio cholerae, the agent of cholera. Here, using comparative analyses of the genomes of several SXT/R391 ICEs, we found evidence that the genomes of these elements have been shaped by inter-ICE recombination. We developed a high throughput semi-quantitative method to explore the genetic determinants involved in hybrid ICE formation. Recombinant ICE formation proved to be relatively frequent, and to depend on host (recA and ICE (s065 and s066 loci, which can independently and potentially cooperatively mediate hybrid ICE formation. s065 and s066, which are found in all SXT/R391 ICEs, are orthologues of the bacteriophage lambda Red recombination genes bet and exo, and the s065/s066 recombination system is the first Red-like recombination pathway to be described in a conjugative element. Neither ICE excision nor conjugative transfer proved to be essential for generation of hybrid ICEs. Instead conjugation facilitates the segregation of hybrids and could provide a means to select for functional recombinant ICEs containing novel combinations of genes conferring resistance to antibiotics. Thus, ICEs promote their own diversity and can yield novel mobile elements capable of disseminating new combinations of antibiotic resistance genes.

  4. Quantum holographic encoding in a two-dimensional electron gas

    Energy Technology Data Exchange (ETDEWEB)

    Moon, Christopher

    2010-05-26

    The advent of bottom-up atomic manipulation heralded a new horizon for attainable information density, as it allowed a bit of information to be represented by a single atom. The discrete spacing between atoms in condensed matter has thus set a rigid limit on the maximum possible information density. While modern technologies are still far from this scale, all theoretical downscaling of devices terminates at this spatial limit. Here, however, we break this barrier with electronic quantum encoding scaled to subatomic densities. We use atomic manipulation to first construct open nanostructures - 'molecular holograms' - which in turn concentrate information into a medium free of lattice constraints: the quantum states of a two-dimensional degenerate Fermi gas of electrons. The information embedded in the holograms is transcoded at even smaller length scales into an atomically uniform area of a copper surface, where it is densely projected into both two spatial degrees of freedom and a third holographic dimension mapped to energy. In analogy to optical volume holography, this requires precise amplitude and phase engineering of electron wavefunctions to assemble pages of information volumetrically. This data is read out by mapping the energy-resolved electron density of states with a scanning tunnelling microscope. As the projection and readout are both extremely near-field, and because we use native quantum states rather than an external beam, we are not limited by lensing or collimation and can create electronically projected objects with features as small as {approx}0.3 nm. These techniques reach unprecedented densities exceeding 20 bits/nm{sup 2} and place tens of bits into a single fermionic state.

  5. Whisker encoding of mechanical events during active tactile exploration

    Directory of Open Access Journals (Sweden)

    Yves eBoubenec

    2012-11-01

    Full Text Available Rats use their whiskers to extract a wealth of information about their immediate environment, such as the shape, position or texture of an object. The information is conveyed to mechanoreceptors located within the whisker follicle in the form of a sequence of whisker deflections induced by the whisker/object contact interaction. How the whiskers filter and shape the mechanical information and effectively participate in the coding of tactile features remains an open question to date. In the present article, a biomechanical model was developed that provides predictions of the whisker dynamics during active tactile exploration, amenable to quantitative experimental comparison. This model is based on a decomposition of the whisker profile into a slow, quasi-static sequence and rapid resonant small-scale vibrations. It was applied to the typical situation of a rat whisking across an object. Having derived the quasi-static sequence of whisker deformation, the resonant properties of the whisker were analyzed, taking into account the boundary conditions imposed by the whisker/surface contact. We then focused on two elementary mechanical events that are expected to trigger neural responses, namely (i the whisker/object first contact and (ii the whisker detachment from the object. Both events were found to trigger a deflection wave propagating upward to the mystacial pad at constant velocity of 3-5m/s. This yielded a characteristic mechanical signature at the whisker base, in the form of a large peak of negative curvature occurring 4ms after the event was triggered. The dependence in amplitude and lag of this mechanical signal with the main contextual parameters (such as radial or angular distance was investigated. The model was validated experimentally by comparing its predictions to high-speed video recordings of shock-induced whisker deflections performed on anesthetized rats. The consequences of these results on possible tactile encoding schemes are

  6. Mathematical modelling and study of the encoding readout scheme for position sensitive detectors

    Science.gov (United States)

    Yue, Xiaoguang; Zeng, Ming; Zeng, Zhi; Wang, Yi; Wang, Xuewu; Zhao, Ziran; Cheng, Jianping; Kang, Kejun

    2016-04-01

    Encoding readout methods based on different schemes have been successfully developed and tested with different types of position-sensitive detectors with strip-readout structures. However, how to construct an encoding scheme in a more general and systematic way is still under study. In this paper, we present a graph model for the encoding scheme. With this model, encoding schemes can be studied in a more systematic way. It is shown that by using an encoding readout method, a maximum of n (n - 1)/2 + 1 strips can be processed with n channels if n is odd, while a maximum of n (n - 2)/2 + 2 strips can be processed with n channels if n is even. Furthermore, based on the model, the encoding scheme construction problem can be translated into a problem in graph theory, the aim of which is to construct an Eulerian trail such that the length of the shortest subcycle is as long as possible. A more general approach to constructing the encoding scheme is found by solving the associated mathematical problem. In addition, an encoding scheme prototype has been constructed, and verified with MRPC detectors.

  7. Escherichia coli rpiA gene encoding ribose phosphate isomerase A

    DEFF Research Database (Denmark)

    Hove-Jensen, Bjarne; Maigaard, Marianne

    1993-01-01

    was sequenced and shown to harbor an open reading frame of 219 codons, sufficient to encode a polypeptide with an Mr of 22,845. The synthesis of the rpiA-encoded polypeptide was detected by analysis of minicells, which established the subunit Mr as 27,000. The assignment of the correct reading frame...

  8. Least-squares reverse time migration of marine data with frequency-selection encoding

    KAUST Repository

    Dai, Wei

    2013-06-24

    The phase-encoding technique can sometimes increase the efficiency of the least-squares reverse time migration (LSRTM) by more than one order of magnitude. However, traditional random encoding functions require all the encoded shots to share the same receiver locations, thus limiting the usage to seismic surveys with a fixed spread geometry. We implement a frequency-selection encoding strategy that accommodates data with a marine streamer geometry. The encoding functions are delta functions in the frequency domain, so that all the encoded shots have unique nonoverlapping frequency content, and the receivers can distinguish the wavefield from each shot with a unique frequency band. Because the encoding functions are orthogonal to each other, there will be no crosstalk between different shots during modeling and migration. With the frequency-selection encoding method, the computational efficiency of LSRTM is increased so that its cost is comparable to conventional RTM for the Marmousi2 model and a marine data set recorded in the Gulf of Mexico. With more iterations, the LSRTM image quality is further improved by suppressing migration artifacts, balancing reflector amplitudes, and enhancing the spatial resolution. We conclude that LSRTM with frequency-selection is an efficient migration method that can sometimes produce more focused images than conventional RTM. © 2013 Society of Exploration Geophysicists.

  9. Genome-wide identification of structural variants in genes encoding drug targets

    DEFF Research Database (Denmark)

    Rasmussen, Henrik Berg; Dahmcke, Christina Mackeprang

    2012-01-01

    The objective of the present study was to identify structural variants of drug target-encoding genes on a genome-wide scale. We also aimed at identifying drugs that are potentially amenable for individualization of treatments based on knowledge about structural variation in the genes encoding the...

  10. Neural correlates of relational memory: successful encoding and retrieval of semantic and perceptual associations

    NARCIS (Netherlands)

    S.E. Prince; S.M. Daselaar; R. Cabeza

    2005-01-01

    Using event-related functional magnetic resonance imaging, we identified brain regions involved in successful relational memory (RM) during encoding and retrieval for semantic and perceptual associations or in general, independent of phase and content. Participants were scanned while encoding and la

  11. Binary encoding method to encrypt Fourier-transformed information of digital images

    Science.gov (United States)

    Lin, Kuang Tsan

    2009-02-01

    An encoding method is used to encrypt the Fourier-transformed information of a hidden (covert) digital image in an overt image, while the Fourier-transformed information must be encoded with binary codes. All of the pixels in an overt image are classified into five groups that are called identification, type, tracing, dimension, and information codes. Identification codes are used to judge if the overt image contains codes that belong to the proposed encoding method or not; type codes are used to judge the encoding type; tracing codes are used to judge the encoding trace; dimension codes are used to judge the size of the hidden information; and information codes are used to decode the hidden information. Applying the proposed encoding method is rather easy, and host images corresponding to overt images are not needed for decoding work. The experiment has demonstrated four types of encoding for the proposed encoding method to reconstruct covert images without any distortion or only with a little distortion.

  12. Female First, Leader Second? Gender Bias in the Encoding of Leadership Behavior

    Science.gov (United States)

    Scott, Kristyn A.; Brown, Douglas J.

    2006-01-01

    In the current paper we investigate whether gender affects the encoding of leadership behavior. In three studies we found evidence that perceivers had difficulty encoding leadership behaviors into their underlying prototypical leadership traits when the behavior implied an agentic trait and the behavior was enacted by a female. Using a lexical…

  13. On the relationships between generative encodings, regularity, and learning abilities when evolving plastic artificial neural networks.

    Directory of Open Access Journals (Sweden)

    Paul Tonelli

    Full Text Available A major goal of bio-inspired artificial intelligence is to design artificial neural networks with abilities that resemble those of animal nervous systems. It is commonly believed that two keys for evolving nature-like artificial neural networks are (1 the developmental process that links genes to nervous systems, which enables the evolution of large, regular neural networks, and (2 synaptic plasticity, which allows neural networks to change during their lifetime. So far, these two topics have been mainly studied separately. The present paper shows that they are actually deeply connected. Using a simple operant conditioning task and a classic evolutionary algorithm, we compare three ways to encode plastic neural networks: a direct encoding, a developmental encoding inspired by computational neuroscience models, and a developmental encoding inspired by morphogen gradients (similar to HyperNEAT. Our results suggest that using a developmental encoding could improve the learning abilities of evolved, plastic neural networks. Complementary experiments reveal that this result is likely the consequence of the bias of developmental encodings towards regular structures: (1 in our experimental setup, encodings that tend to produce more regular networks yield networks with better general learning abilities; (2 whatever the encoding is, networks that are the more regular are statistically those that have the best learning abilities.

  14. Windows Media Encoder og Producer: værktøjer til udvikling af netbaseret videomateriale

    DEFF Research Database (Denmark)

    Dørup, Jens

    2004-01-01

    Artiklen giver en indføring i brugen af to gratis og relativt let tilgængelige programmer: Microsoft Encoder og Producer. Med MS Encoder kan man behandle et videosignal f.eks. fra et digitalt videokamera og sende det i realtid ud på internettet, hvorved signalet kan ses fra en anden computer på...

  15. Effect of Unpleasant Loud Noise on Hippocampal Activities during Picture Encoding: An fMRI Study

    Science.gov (United States)

    Hirano, Yoshiyuki; Fujita, Masafumi; Watanabe, Kazuko; Niwa, Masami; Takahashi, Toru; Kanematsu, Masayuki; Ido, Yasushi; Tomida, Mihoko; Onozuka, Minoru

    2006-01-01

    The functional link between the amygdala and hippocampus in humans has not been well documented. We examined the effect of unpleasant loud noise on hippocampal and amygdaloid activities during picture encoding by means of fMRI, and on the correct response in humans. The noise reduced activity in the hippocampus during picture encoding, decreased…

  16. Characterization of a plasmid-encoded urease gene cluster found in members of the family Enterobacteriaceae.

    OpenAIRE

    D'Orazio, S E; Collins, C M

    1993-01-01

    Plasmid-encoded urease gene clusters found in uropathogenic isolates of Escherichia coli, Providencia stuartii, and Salmonella cubana demonstrated DNA homology, similar positions of restriction endonuclease cleavage sites, and manners of urease expression and therefore represent the same locus. DNA sequence analysis indicated that the plasmid-encoded urease genes are closely related to the Proteus mirabilis urease genes.

  17. Physical exercise during encoding improves vocabulary learning in young female adults: a neuroendocrinological study.

    Directory of Open Access Journals (Sweden)

    Maren Schmidt-Kassow

    Full Text Available Acute physical activity has been repeatedly shown to improve various cognitive functions. However, there have been no investigations comparing the effects of exercise during verbal encoding versus exercise prior to encoding on long-term memory performance. In this current psychoneuroendocrinological study we aim to test whether light to moderate ergometric bicycling during vocabulary encoding enhances subsequent recall compared to encoding during physical rest and encoding after being physically active. Furthermore, we examined the kinetics of brain-derived neurotrophic factor (BDNF in serum which has been previously shown to correlate with learning performance. We also controlled for the BDNF val66met polymorphism. We found better vocabulary test performance for subjects that were physically active during the encoding phase compared to sedentary subjects. Post-hoc tests revealed that this effect was particularly present in initially low performers. BDNF in serum and BDNF genotype failed to account for the current result. Our data indicates that light to moderate simultaneous physical activity during encoding, but not prior to encoding, is beneficial for subsequent recall of new items.

  18. Divided Attention Can Enhance Memory Encoding: The Attentional Boost Effect in Implicit Memory

    Science.gov (United States)

    Spataro, Pietro; Mulligan, Neil W.; Rossi-Arnaud, Clelia

    2013-01-01

    Distraction during encoding has long been known to disrupt later memory performance. Contrary to this long-standing result, we show that detecting an infrequent target in a dual-task paradigm actually improves memory encoding for a concurrently presented word, above and beyond the performance reached in the full-attention condition. This absolute…

  19. The Role of Memory Activation in Creating False Memories of Encoding Context

    Science.gov (United States)

    Arndt, Jason

    2010-01-01

    Using 3 experiments, I examined false memory for encoding context by presenting Deese-Roediger-McDermott themes (Deese, 1959; Roediger & McDermott, 1995) in usual-looking fonts and by testing related, but unstudied, lure items in a font that was shown during encoding. In 2 of the experiments, testing lure items in the font used to study their…

  20. Surfactant Protein-D-Encoding Gene Variant Polymorphisms Are Linked to Respiratory Outcome in Premature Infants

    DEFF Research Database (Denmark)

    Sorensen, Grith Lykke; Dahl, Marianne; Tan, Qihua;

    2014-01-01

    OBJECTIVE: Associations between the genetic variation within or downstream of the surfactant protein-D-encoding gene (SFTPD), which encodes the collectin surfactant protein-D (SP-D) and may lead to respiratory distress syndrome or bronchopulmonary dysplasia, recently were reported. Our aim was to...

  1. Thermal and acid tolerant beta xylosidases, arabinofuranosidases, genes encoding, related organisms, and methods

    Science.gov (United States)

    Thompson, David N; Thompson, Vicki S; Schaller, Kastli D; Apel, William A; Reed, David W; Lacey, Jeffrey A

    2013-04-30

    Isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius and variations thereof are provided. Further provided are methods of at least partially degrading xylotriose, xylobiose, and/or arabinofuranose-substituted xylan using isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius and variations thereof.

  2. Thermal and acid tolerant beta-xylosidases, genes encoding, related organisms, and methods

    Science.gov (United States)

    Thompson, David N.; Thompson, Vicki S.; Schaller, Kastli D.; Apel, William A.; Lacey, Jeffrey A.; Reed, David W.

    2011-04-12

    Isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius and variations thereof are provided. Further provided are methods of at least partially degrading xylotriose and/or xylobiose using isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius and variations thereof.

  3. A Novel Reconstruction Framework for Time-Encoded Signals with Integrate-and-Fire Neurons.

    Science.gov (United States)

    Florescu, Dorian; Coca, Daniel

    2015-09-01

    Integrate-and-fire neurons are time encoding machines that convert the amplitude of an analog signal into a nonuniform, strictly increasing sequence of spike times. Under certain conditions, the encoded signals can be reconstructed from the nonuniform spike time sequences using a time decoding machine. Time encoding and time decoding methods have been studied using the nonuniform sampling theory for band-limited spaces, as well as for generic shift-invariant spaces. This letter proposes a new framework for studying IF time encoding and decoding by reformulating the IF time encoding problem as a uniform sampling problem. This framework forms the basis for two new algorithms for reconstructing signals from spike time sequences. We demonstrate that the proposed reconstruction algorithms are faster, and thus better suited for real-time processing, while providing a similar level of accuracy, compared to the standard reconstruction algorithm. PMID:26161820

  4. Distributed Successive Approximation Coding using Broadcast Advantage: The Two-Encoder Case

    CERN Document Server

    Chen, Zichong; Vetterli, Martin

    2010-01-01

    Traditional distributed source coding rarely considers the possible link between separate encoders. However, the broadcast nature of wireless communication in sensor networks provides a free gossip mechanism which can be used to simplify encoding/decoding and reduce transmission power. Using this broadcast advantage, we present a new two-encoder scheme which imitates the ping-pong game and has a successive approximation structure. For the quadratic Gaussian case, we prove that this scheme is successively refinable on the {sum-rate, distortion pair} surface, which is characterized by the rate-distortion region of the distributed two-encoder source coding. A potential energy saving over conventional distributed coding is also illustrated. This ping-pong distributed coding idea can be extended to the multiple encoder case and provides the theoretical foundation for a new class of distributed image coding method in wireless scenarios.

  5. Generating Combinatorial Test Cases by Efficient SAT Encodings Suitable for CDCL SAT Solvers

    Science.gov (United States)

    Banbara, Mutsunori; Matsunaka, Haruki; Tamura, Naoyuki; Inoue, Katsumi

    Generating test cases for combinatorial testing is to find a covering array in Combinatorial Designs. In this paper, we consider the problem of finding optimal covering arrays by SAT encoding. We present two encodings suitable for modern CDCL SAT solvers. One is based on the order encoding that is efficient in the sense that unit propagation achieves the bounds consistency in CSPs. Another one is based on a combination of the order encoding and Hnich's encoding. CDCL SAT solvers have an important role in the latest SAT technology. The effective use of them is essential for enhancing efficiency. In our experiments, we found solutions that can be competitive with the previously known results for the arrays of strength two to six with small to moderate size of components and symbols. Moreover, we succeeded either in proving the optimality of known bounds or in improving known lower bounds for some arrays.

  6. Design of a CAN bus interface for photoelectric encoder in the spaceflight camera

    Science.gov (United States)

    Sun, Ying; Wan, Qiu-hua; She, Rong-hong; Zhao, Chang-hai; Jiang, Yong

    2009-05-01

    In order to make photoelectric encoder usable in a spaceflight camera which adopts CAN bus as the communication method, CAN bus interface of the photoelectric encoder is designed in this paper. CAN bus interface hardware circuit of photoelectric encoder consists of CAN bus controller SJA 1000, CAN bus transceiver TJA1050 and singlechip. CAN bus interface controlling software program is completed in C language. A ten-meter shield twisted pair line is used as the transmission medium in the spaceflight camera, and speed rate is 600kbps.The experiments show that: the photoelectric encoder with CAN bus interface which has the advantages of more reliability, real-time, transfer rate and transfer distance overcomes communication line's shortcomings of classical photoelectric encoder system. The system works well in automatic measuring and controlling system.

  7. Repeated quantum error correction on a continuously encoded qubit by real-time feedback

    Science.gov (United States)

    Cramer, J.; Kalb, N.; Rol, M. A.; Hensen, B.; Blok, M. S.; Markham, M.; Twitchen, D. J.; Hanson, R.; Taminiau, T. H.

    2016-05-01

    Reliable quantum information processing in the face of errors is a major fundamental and technological challenge. Quantum error correction protects quantum states by encoding a logical quantum bit (qubit) in multiple physical qubits. To be compatible with universal fault-tolerant computations, it is essential that states remain encoded at all times and that errors are actively corrected. Here we demonstrate such active error correction on a continuously protected logical qubit using a diamond quantum processor. We encode the logical qubit in three long-lived nuclear spins, repeatedly detect phase errors by non-destructive measurements, and apply corrections by real-time feedback. The actively error-corrected qubit is robust against errors and encoded quantum superposition states are preserved beyond the natural dephasing time of the best physical qubit in the encoding. These results establish a powerful platform to investigate error correction under different types of noise and mark an important step towards fault-tolerant quantum information processing.

  8. Spectral-temporal-polarization encoding of photons for multi-user secure quantum communication

    Science.gov (United States)

    Donkor, Eric

    2014-05-01

    We describe a Quantum Key Distribution protocol that combines temporal-, spectraland polarization-encoding of photons for secure communication over an interconnected network of users. Temporal encoding is used to identify a user's location or address on the network. Polarization encoding is used to generate private cryptographic key. Polarization encoded information is locally and randomly generated by users and exchanged only over a dedicated secure channel. Spectral encoding allows for the detection of eavesdropping and tampering by a malicious agent. Temporal-spectral signals sent from the network administrator (Alice) to a user are bright light source. On the other hand spectral-temporal signal from a network user (Bob) to the administrator (Alice) are single photons. Signals are sent across the network as ordered light pairs. The ordering format is randomly chosen and are revealed only at the time of key selection between the parties so that a secure one-time cryptographic pad can be generated

  9. Compensating for Language Deficits in Amnesia II: H.M.'s Spared versus Impaired Encoding Categories.

    Science.gov (United States)

    MacKay, Donald G; Johnson, Laura W; Hadley, Chris

    2013-01-01

    Although amnesic H.M. typically could not recall where or when he met someone, he could recall their topics of conversation after long interference-filled delays, suggesting impaired encoding for some categories of novel events but not others. Similarly, H.M. successfully encoded into internal representations (sentence plans) some novel linguistic structures but not others in the present language production studies. For example, on the Test of Language Competence (TLC), H.M. produced uncorrected errors when encoding a wide range of novel linguistic structures, e.g., violating reliably more gender constraints than memory-normal controls when encoding referent-noun, pronoun-antecedent, and referent-pronoun anaphora, as when he erroneously and without correction used the gender-inappropriate pronoun "her" to refer to a man. In contrast, H.M. never violated corresponding referent-gender constraints for proper names, suggesting that his mechanisms for encoding proper name gender-agreement were intact. However, H.M. produced no more dysfluencies, off-topic comments, false starts, neologisms, or word and phonological sequencing errors than controls on the TLC. Present results suggest that: (a) frontal mechanisms for retrieving and sequencing word, phrase, and phonological categories are intact in H.M., unlike in category-specific aphasia; (b) encoding mechanisms in the hippocampal region are category-specific rather than item-specific, applying to, e.g., proper names rather than words; (c) H.M.'s category-specific mechanisms for encoding referents into words, phrases, and propositions are impaired, with the exception of referent gender, person, and number for encoding proper names; and (d) H.M. overuses his intact proper name encoding mechanisms to compensate for his impaired mechanisms for encoding other functionally equivalent linguistic information. PMID:24961410

  10. A fast improved fat tree encoder for wave union TDC in an FPGA

    International Nuclear Information System (INIS)

    Up to now, the wave union method can achieve the best timing performance in FPGA-based TDC designs. However, it should be guaranteed in such a structure that the non-thermometer code to binary code (NTH2B) encoding process should be finished within just one system clock cycle. So the implementation of the NTH2B encoder is quite challenging considering the high speed requirement. Besides, the high resolution wave union TDC also demands that the encoder convert an ultra-wide input code to a binary code. We present a fast improved fat tree encoder (IFTE) to fulfill such requirements, in which bubble error suppression is also integrated. With this encoder scheme, a wave union TDC with 7.7 ps RMS and 3.8 ps effective bin size was implemented in an FPGA from Xilinx Virtex 5 family. An encoding time of 8.33 ns was achieved for a 276-bit non-thermometer code to a 9-bit binary code conversion. We conducted a series of tests on the oscillating period of the wave union launcher, as well as the overall performance of the TDC; test results indicate that the IFTE works well. In fact, in the implementation of this encoder, no manual routing or special constraints were required; therefore, this IFTE structure could also be further applied in other delay-chain-based FPGA TDCs. (authors)

  11. Correcting encoder interpolation error on the Green Bank Telescope using an iterative model based identification algorithm

    Science.gov (United States)

    Franke, Timothy; Weadon, Tim; Ford, John; Garcia-Sanz, Mario

    2015-10-01

    Various forms of measurement errors limit telescope tracking performance in practice. A new method for identifying the correcting coefficients for encoder interpolation error is developed. The algorithm corrects the encoder measurement by identifying a harmonic model of the system and using that model to compute the necessary correction parameters. The approach improves upon others by explicitly modeling the unknown dynamics of the structure and controller and by not requiring a separate system identification to be performed. Experience gained from pin-pointing the source of encoder error on the Green Bank Radio Telescope (GBT) is presented. Several tell-tale indicators of encoder error are discussed. Experimental data from the telescope, tested with two different encoders, are presented. Demonstration of the identification methodology on the GBT as well as details of its implementation are discussed. A root mean square tracking error reduction from 0.68 arc seconds to 0.21 arc sec was achieved by changing encoders and was further reduced to 0.10 arc sec with the calibration algorithm. In particular, the ubiquity of this error source is shown and how, by careful correction, it is possible to go beyond the advertised accuracy of an encoder.

  12. An operational rate control scheme for H.264 with two-stage encoding

    Science.gov (United States)

    Kwon, Do-Kyoung; Shen, Mei-Yin; Kuo, C.-C. Jay

    2005-08-01

    An operational rate control (RC) scheme based on two-stage encoding is studied in this research, where frame-layer rate control with a constant bit rate to achieve constant video quality is examined. In the first encoding stage, the R-D optimized mode decision and its associated motion estimation (RDO) as well as DCT/Q, IQ/IDCT and entropy coding are performed for all macroblocks (MBs) for a target frame using an initial quantization parameter (QP), which is the QP of its previous frame. In the second encoding stage, the residual signal from the first stage is encoded using several QP values around the initial QP. Given the target bits and distortion for the current frame, the residual signal is finally encoded using the QP determined by comparing target bits and distortion with actual bits and distortion. To reduce the additional coding complexity of the two-stage encoding, upper and lower bounds around target bits and distortion are employed to reduce the number of encoding required in the second stage. Experimental results are given to show the superior performance of two proposed rate control algorithms, where one targets at the constant bit rate while the other at constant quality.

  13. Artificial Neural Network-based error compensation procedure for low-cost encoders

    CERN Document Server

    Dhar, V K; Kaul, S K; Koul, R; Dubey, B P

    2009-01-01

    An Artificial Neural Network-based error compensation method is proposed for improving the accuracy of resolver-based 16-bit encoders by compensating for their respective systematic error profiles. The error compensation procedure, for a particular encoder, involves obtaining its error profile by calibrating it on a precision rotary table, training the neural network by using a part of this data and then determining the corrected encoder angle by subtracting the ANN-predicted error from the measured value of the encoder angle. Since it is not guaranteed that all the resolvers will have exactly similar error profiles because of the inherent differences in their construction on a micro scale, the ANN has been trained on one error profile at a time and the corresponding weight file is then used only for compensating the systematic error of this particular encoder. The systematic nature of the error profile for each of the encoders has also been validated by repeated calibration of the encoders over a period of t...

  14. Multiaccess Channels with State Known to Some Encoders and Independent Messages

    Directory of Open Access Journals (Sweden)

    Kotagiri ShivaPrasad

    2008-01-01

    Full Text Available We consider a state-dependent multiaccess channel (MAC with state noncausally known to some encoders. For simplicity of exposition, we focus on a two-encoder model in which one of the encoders has noncausal access to the channel state. The results can in principle be extended to any number of encoders with a subset of them being informed. We derive an inner bound for the capacity region in the general discrete memoryless case and specialize to a binary noiseless case. In binary noiseless case, we compare the inner bounds with trivial outer bounds obtained by providing the channel state to the decoder. In the case of maximum entropy channel state, we obtain the capacity region for binary noiseless MAC with one informed encoder. For a Gaussian state-dependent MAC with one encoder being informed of the channel state, we present an inner bound by applying a slightly generalized dirty paper coding (GDPC at the informed encoder and a trivial outer bound by providing channel state to the decoder also. In particular, if the channel input is negatively correlated with the channel state in the random coding distribution, then GDPC can be interpreted as partial state cancellation followed by standard dirty paper coding. The uninformed encoders benefit from the state cancellation in terms of achievable rates, however, it seems that GDPC cannot completely eliminate the effect of the channel state on the achievable rate region, in contrast to the case of all encoders being informed. In the case of infinite state variance, we provide an inner bound and also provide a nontrivial outer bound for this case which is better than the trivial outer bound.

  15. Multiaccess Channels with State Known to Some Encoders and Independent Messages

    Directory of Open Access Journals (Sweden)

    J. Nicholas Laneman

    2008-05-01

    Full Text Available We consider a state-dependent multiaccess channel (MAC with state noncausally known to some encoders. For simplicity of exposition, we focus on a two-encoder model in which one of the encoders has noncausal access to the channel state. The results can in principle be extended to any number of encoders with a subset of them being informed. We derive an inner bound for the capacity region in the general discrete memoryless case and specialize to a binary noiseless case. In binary noiseless case, we compare the inner bounds with trivial outer bounds obtained by providing the channel state to the decoder. In the case of maximum entropy channel state, we obtain the capacity region for binary noiseless MAC with one informed encoder. For a Gaussian state-dependent MAC with one encoder being informed of the channel state, we present an inner bound by applying a slightly generalized dirty paper coding (GDPC at the informed encoder and a trivial outer bound by providing channel state to the decoder also. In particular, if the channel input is negatively correlated with the channel state in the random coding distribution, then GDPC can be interpreted as partial state cancellation followed by standard dirty paper coding. The uninformed encoders benefit from the state cancellation in terms of achievable rates, however, it seems that GDPC cannot completely eliminate the effect of the channel state on the achievable rate region, in contrast to the case of all encoders being informed. In the case of infinite state variance, we provide an inner bound and also provide a nontrivial outer bound for this case which is better than the trivial outer bound.

  16. Incidental memory encoding assessed with signal detection theory and functional magnetic resonance imaging (fMRI

    Directory of Open Access Journals (Sweden)

    Benjamin eClemens

    2015-11-01

    Full Text Available In functional magnetic resonance imaging (fMRI studies that apply a ‘subsequent memory’ approach, successful encoding is indicated by increased fMRI activity during the encoding phase for hits versus misses, in areas underlying memory encoding such as the hippocampal formation. Signal-detection theory (SDT can be used to analyze memory-related fMRI activity as a function of the participant’s memory trace strength (d’. The goal of the present study was to use SDT to examine the relationship between fMRI activity during incidental encoding and participants’ recognition performance. To implement a new approach, post-experimental group assignment into High- or Low Performers (HP or LP was based on 29 healthy participants' recognition performance, assessed with SDT. The analyses focused on the interaction between the factors group (HP vs. LP and recognition performance (hits vs. misses. A whole-brain analysis revealed increased activation for HP versus LP during incidental encoding for remembered versus forgotten items (hits > misses in the insula / temporo-parietal junction (TPJ and the FFG. Parameter estimates in these regions exhibited a significant positive correlation with (d’. As these brain regions are highly relevant for salience detection (insula, stimulus-driven attention (TPJ, and content-specific processing of mnemonic stimuli (FFG, we suggest that HPs’ elevated memory performance was associated with enhanced attentional and content-specific sensory processing during the encoding phase. We provide first correlative evidence that encoding-related activity in content-specific sensory areas and content-independent attention and salience detection areas influences memory performance in a task with incidental encoding of facial stimuli. Based on our findings, we discuss whether the aforementioned group differences in brain activity during incidental encoding might constitute the basis of general differences in memory performance

  17. Dual task demands on encoding and retrieval processes: evidence from healthy adult ageing.

    Science.gov (United States)

    Logie, Robert H; Della Sala, Sergio; MacPherson, Sarah E; Cooper, Janine

    2007-01-01

    Previous studies of dual-task performance have demonstrated that encoding and retrieval processes are differentially affected by the simultaneous performance of a secondary task. Whilst dual task demands during encoding have a detrimental effect on memory performance, dual task demands during retrieval have a detrimental effect on secondary task performance. However, dual task effects on memory during encoding appear unaffected by age, while effects at retrieval on secondary task performance are age sensitive. Most previous studies have focused on free recall or cued recall of word lists. In the current study, encoding and retrieval were examined in younger and older healthy adults performing a task typically thought to load verbal working memory, namely immediate serial ordered digit recall together with a response time (RT) task. In Experiment 1, the demands of a secondary RT task were varied as a function of response-to-stimulus interval, while in Experiment 2 the predictability of the stimulus location was manipulated. In both age groups, dual task during encoding, but not at retrieval, produced significant interference in memory performance and unlike most previous studies the impact at encoding was greater for the older group. In contrast, significantly slower RTs were demonstrated under dual task conditions during encoding and retrieval. Older adults produced significantly slower RTs than younger adults only for dual task at retrieval. Older people were more sensitive to time pressure in responding under dual task conditions, but neither group was sensitive to predictability of stimulus location. Results are consistent with the concept of a cognitive resource that supports dual task performance, and that is sensitive to the effects of age on memory encoding of items that rely heavily on the operation of verbal working memory resources. The age sensitivity to dual task only became apparent when effects at encoding and at retrieval were considered separately

  18. Genome-wide identification of NBS-encoding resistance genes in Brassica rapa

    OpenAIRE

    Mun, Jeong-Hwan; Yu, Hee-Ju; Park, Soomin; Park, Beom-Seok

    2009-01-01

    Nucleotide-binding site (NBS)-encoding resistance genes are key plant disease-resistance genes and are abundant in plant genomes, comprising up to 2% of all genes. The availability of genome sequences from several plant models enables the identification and cloning of NBS-encoding genes from closely related species based on a comparative genomics approach. In this study, we used the genome sequence of Brassica rapa to identify NBS-encoding genes in the Brassica genome. We identified 92 non-re...

  19. The symmetric MSD encoder for one-step adder of ternary optical computer

    Science.gov (United States)

    Kai, Song; LiPing, Yan

    2016-08-01

    The symmetric Modified Signed-Digit (MSD) encoding is important for achieving the one-step MSD adder of Ternary Optical Computer (TOC). The paper described the symmetric MSD encoding algorithm in detail, and developed its truth table which has nine rows and nine columns. According to the truth table, the state table was developed, and the optical-path structure and circuit-implementation scheme of the symmetric MSD encoder (SME) for one-step adder of TOC were proposed. Finally, a series of experiments were designed and performed. The observed results of the experiments showed that the scheme to implement SME was correct, feasible and efficient.

  20. Local T2 measurement employing longitudinal Hadamard encoding and adiabatic inversion pulses in porous media.

    Science.gov (United States)

    Vashaee, S; Newling, B; Balcom, B J

    2015-12-01

    Band selective adiabatic inversion radio frequency pulses were employed for multi-slice T2 distribution measurements in porous media samples. Multi-slice T2 measurement employing longitudinal Hadamard encoding has an inherent sensitivity advantage over slice-by-slice local T2 measurements. The slice selection process is rendered largely immune to B1 variation by employing hyperbolic secant adiabatic inversion pulses, which simultaneously invert spins in several well-defined slices. While Hadamard encoding is well established for local spectroscopy, the current work is the first use of Hadamard encoding for local T2 measurement. PMID:26580063