Branching diffusion with particle interactions
Engländer, János; Zhang, Liang
2016-01-01
A $d$-dimensional branching diffusion, $Z$, is investigated, where the linear attraction or repulsion between particles is competing with an Ornstein-Uhlenbeck drift, with parameter $b$ (we take $b>0$ for inward O-U and $b0$) or repulsion ($\\gamma 0$, while escapes to infinity exponentially fast (rate $|b|$) when $b
A Counterflow Diffusion Flame Study Of Branched Octane Isomers
2012-09-26
public release; distribution is unlimited. A counterflow diffusion flame study of branched octane isomers The views, opinions and/or findings contained...MC 0934 La Jolla, CA 92093 -0934 ABSTRACT A counterflow diffusion flame study of branched octane isomers Report Title Conventional petroleum, Fischer...counterflow diffusion flame study of branched octane isomers Approved for public release; distribution is unlimited. 61657.7-EG REPORT DOCUMENTATION PAGE
Models of lung branching morphogenesis.
Miura, Takashi
2015-03-01
Vertebrate airway has a tree-like-branched structure. This structure is generated by repeated tip splitting, which is called branching morphogenesis. Although this phenomenon is extensively studied in developmental biology, the mechanism of the pattern formation is not well understood. Conversely, there are many tree-like structures in purely physical or chemical systems, and their pattern formation mechanisms are well-understood using mathematical models. Recent studies correlate these biological observations and mathematical models to understand lung branching morphogenesis. These models use slightly different mechanisms. In this article, we will review recent progress in modelling lung branching morphogenesis, and future directions to experimentally verify the models. © The Authors 2015. Published by Oxford University Press on behalf of the Japanese Biochemical Society. All rights reserved.
Mechanisms of Side Branching and Tip Splitting in a Model of Branching Morphogenesis
Guo, Yina; Sun, Mingzhu; Garfinkel, Alan; Zhao, Xin
2014-01-01
Recent experimental work in lung morphogenesis has described an elegant pattern of branching phenomena. Two primary forms of branching have been identified: side branching and tip splitting. In our previous study of lung branching morphogenesis, we used a 4 variable partial differential equation (PDE), due to Meinhardt, as our mathematical model to describe the reaction and diffusion of morphogens creating those branched patterns. By altering key parameters in the model, we were able to reproduce all the branching styles and the switch between branching modes. Here, we attempt to explain the branching phenomena described above, as growing out of two fundamental instabilities, one in the longitudinal (growth) direction and the other in the transverse direction. We begin by decoupling the original branching process into two semi-independent sub-processes, 1) a classic activator/inhibitor system along the growing stalk, and 2) the spatial growth of the stalk. We then reduced the full branching model into an activator/inhibitor model that embeds growth of the stalk as a controllable parameter, to explore the mechanisms that determine different branching patterns. We found that, in this model, 1) side branching results from a pattern-formation instability of the activator/inhibitor subsystem in the longitudinal direction. This instability is far from equilibrium, requiring a large inhomogeneity in the initial conditions. It successively creates periodic activator peaks along the growing stalk, each of which later on migrates out and forms a side branch; 2) tip splitting is due to a Turing-style instability along the transversal direction, that creates the spatial splitting of the activator peak into 2 simultaneously-formed peaks at the growing tip, the occurrence of which requires the widening of the growing stalk. Tip splitting is abolished when transversal stalk widening is prevented; 3) when both instabilities are satisfied, tip bifurcation occurs together with side
Mechanisms of side branching and tip splitting in a model of branching morphogenesis.
Directory of Open Access Journals (Sweden)
Yina Guo
Full Text Available Recent experimental work in lung morphogenesis has described an elegant pattern of branching phenomena. Two primary forms of branching have been identified: side branching and tip splitting. In our previous study of lung branching morphogenesis, we used a 4 variable partial differential equation (PDE, due to Meinhardt, as our mathematical model to describe the reaction and diffusion of morphogens creating those branched patterns. By altering key parameters in the model, we were able to reproduce all the branching styles and the switch between branching modes. Here, we attempt to explain the branching phenomena described above, as growing out of two fundamental instabilities, one in the longitudinal (growth direction and the other in the transverse direction. We begin by decoupling the original branching process into two semi-independent sub-processes, 1 a classic activator/inhibitor system along the growing stalk, and 2 the spatial growth of the stalk. We then reduced the full branching model into an activator/inhibitor model that embeds growth of the stalk as a controllable parameter, to explore the mechanisms that determine different branching patterns. We found that, in this model, 1 side branching results from a pattern-formation instability of the activator/inhibitor subsystem in the longitudinal direction. This instability is far from equilibrium, requiring a large inhomogeneity in the initial conditions. It successively creates periodic activator peaks along the growing stalk, each of which later on migrates out and forms a side branch; 2 tip splitting is due to a Turing-style instability along the transversal direction, that creates the spatial splitting of the activator peak into 2 simultaneously-formed peaks at the growing tip, the occurrence of which requires the widening of the growing stalk. Tip splitting is abolished when transversal stalk widening is prevented; 3 when both instabilities are satisfied, tip bifurcation occurs
Modelling of Innovation Diffusion
Directory of Open Access Journals (Sweden)
Arkadiusz Kijek
2010-01-01
Full Text Available Since the publication of the Bass model in 1969, research on the modelling of the diffusion of innovation resulted in a vast body of scientific literature consisting of articles, books, and studies of real-world applications of this model. The main objective of the diffusion model is to describe a pattern of spread of innovation among potential adopters in terms of a mathematical function of time. This paper assesses the state-of-the-art in mathematical models of innovation diffusion and procedures for estimating their parameters. Moreover, theoretical issues related to the models presented are supplemented with empirical research. The purpose of the research is to explore the extent to which the diffusion of broadband Internet users in 29 OECD countries can be adequately described by three diffusion models, i.e. the Bass model, logistic model and dynamic model. The results of this research are ambiguous and do not indicate which model best describes the diffusion pattern of broadband Internet users but in terms of the results presented, in most cases the dynamic model is inappropriate for describing the diffusion pattern. Issues related to the further development of innovation diffusion models are discussed and some recommendations are given. (original abstract
Branching process models of cancer
Durrett, Richard
2015-01-01
This volume develops results on continuous time branching processes and applies them to study rate of tumor growth, extending classic work on the Luria-Delbruck distribution. As a consequence, the authors calculate the probability that mutations that confer resistance to treatment are present at detection and quantify the extent of tumor heterogeneity. As applications, the authors evaluate ovarian cancer screening strategies and give rigorous proofs for results of Heano and Michor concerning tumor metastasis. These notes should be accessible to students who are familiar with Poisson processes and continuous time. Richard Durrett is mathematics professor at Duke University, USA. He is the author of 8 books, over 200 journal articles, and has supervised more than 40 Ph.D. students. Most of his current research concerns the applications of probability to biology: ecology, genetics, and most recently cancer.
Zhu, Xiaolu; Yang, Hao
2017-12-01
The recently emerged four-dimensional (4D) biofabrication technique aims to create dynamic three-dimensional (3D) biological structures that can transform their shapes or functionalities with time when an external stimulus is imposed or when cell postprinting self-assembly occurs. The evolution of 3D pattern of branching geometry via self-assembly of cells is critical for 4D biofabrication of artificial organs or tissues with branched geometry. However, it is still unclear that how the formation and evolution of these branching pattern are biologically encoded. We study the 4D fabrication of lung branching structures utilizing a simulation model on the reaction-diffusion mechanism, which is established using partial differential equations of four variables, describing the reaction and diffusion process of morphogens with time during the development process of lung branching. The simulation results present the forming process of 3D branching pattern, and also interpret the behaviors of side branching and tip splitting as the stalk growing, through 3D visualization of numerical simulation.
Yablonskiy, Dmitriy A.; Sukstanskii, Alexander L.; Conradi, Mark S.
2014-02-01
In a recently published paper by Parra-Robles and Wild [1], the authors challenge the in vivo lung morphometry technique (based on hyperpolarized gas diffusion MRI) developed by our Washington University research group. In this Commentary we demonstrate that the main conclusion of Parra-Robles and Wild, that our MRI-based lung morphometry technique “produces inaccurate estimates of the airway dimensions”, does not have any scientific basis and is not in agreement with the considerable body of peer-reviewed scientific reports as well as with Parra-Robles and Wild's own data. On the contrary, our technique has a strong theoretical background, is validated, and provides accurate 3D tomographic information on lung microstructural parameters previously available only from invasive biopsy specimens. This technique has already produced a number of results related to lung morphology and function that were not previously available. In our Commentary we also discuss a number of other incorrect statements in and shortcomings of Parra-Robles and Wild's paper.
Crossover from compact to branched films in electrodeposition with surface diffusion
Reis, F. D. A. Aarão; di Caprio, Dung; Taleb, Abdelhafed
2017-08-01
We study a model for thin film electrodeposition in which instability development by preferential adsorption and reduction of cations at surface peaks competes with surface relaxation by diffusion of the adsorbates. The model considers cations moving in a supported electrolyte, adsorption and reduction when they reach the film surface, and consequent production of mobile particles that execute activated surface diffusion, which is represented by a sequence of random hops to neighboring lattice sites with a maximum of G hop attempts (G ≫1 ), a detachment probability ɛ Computer simulations show the formation of a compact wetting layer followed by the growth of branched deposits. The maximal thickness zc of that layer increases with G but is weakly affected by ɛ . A scaling approach describes the crossover from smooth film growth to unstable growth and predicts zc˜Gγ , with γ =1 /(1-ν2 ≈0.43), where ν ≈0.30 is the inverse of the dynamical exponent of the Villain-Lai-Das Sarma equation that describes the initial roughening. Using previous results for related deposition models, the thickness zc can be predicted as a function of an activation energy for terrace surface diffusion and the temperature, and the small effects of the parameter ɛ are justified. These predictions are confirmed by the numerical results with good accuracy. We discuss possible applications, with a particular focus on the growth of multifuncional structures with stacking layers of different porosity.
Simple statistical model for branched aggregates
DEFF Research Database (Denmark)
Lemarchand, Claire; Hansen, Jesper Schmidt
2015-01-01
We propose a statistical model that can reproduce the size distribution of any branched aggregate, including amylopectin, dendrimers, molecular clusters of monoalcohols, and asphaltene nanoaggregates. It is based on the conditional probability for one molecule to form a new bond with a molecule...
Tree Branching: Leonardo da Vinci's Rule versus Biomechanical Models
Minamino, Ryoko; Tateno, Masaki
2014-01-01
This study examined Leonardo da Vinci's rule (i.e., the sum of the cross-sectional area of all tree branches above a branching point at any height is equal to the cross-sectional area of the trunk or the branch immediately below the branching point) using simulations based on two biomechanical models: the uniform stress and elastic similarity models. Model calculations of the daughter/mother ratio (i.e., the ratio of the total cross-sectional area of the daughter branches to the cross-sectional area of the mother branch at the branching point) showed that both biomechanical models agreed with da Vinci's rule when the branching angles of daughter branches and the weights of lateral daughter branches were small; however, the models deviated from da Vinci's rule as the weights and/or the branching angles of lateral daughter branches increased. The calculated values of the two models were largely similar but differed in some ways. Field measurements of Fagus crenata and Abies homolepis also fit this trend, wherein models deviated from da Vinci's rule with increasing relative weights of lateral daughter branches. However, this deviation was small for a branching pattern in nature, where empirical measurements were taken under realistic measurement conditions; thus, da Vinci's rule did not critically contradict the biomechanical models in the case of real branching patterns, though the model calculations described the contradiction between da Vinci's rule and the biomechanical models. The field data for Fagus crenata fit the uniform stress model best, indicating that stress uniformity is the key constraint of branch morphology in Fagus crenata rather than elastic similarity or da Vinci's rule. On the other hand, mechanical constraints are not necessarily significant in the morphology of Abies homolepis branches, depending on the number of daughter branches. Rather, these branches were often in agreement with da Vinci's rule. PMID:24714065
Fractal model of anomalous diffusion.
Gmachowski, Lech
2015-12-01
An equation of motion is derived from fractal analysis of the Brownian particle trajectory in which the asymptotic fractal dimension of the trajectory has a required value. The formula makes it possible to calculate the time dependence of the mean square displacement for both short and long periods when the molecule diffuses anomalously. The anomalous diffusion which occurs after long periods is characterized by two variables, the transport coefficient and the anomalous diffusion exponent. An explicit formula is derived for the transport coefficient, which is related to the diffusion constant, as dependent on the Brownian step time, and the anomalous diffusion exponent. The model makes it possible to deduce anomalous diffusion properties from experimental data obtained even for short time periods and to estimate the transport coefficient in systems for which the diffusion behavior has been investigated. The results were confirmed for both sub and super-diffusion.
3D modelling of branching in plants
Evers, J.B.
2011-01-01
Shoot branching is a key determinant of overall aboveground plant form. During plant development, the number of branches formed strongly influences the amount of light absorbed by the plant, and thus the plant’s competitive strength in terms of light capture in relation to neighbouring plants.
Models of diffuse solar radiation
Energy Technology Data Exchange (ETDEWEB)
Boland, John; Ridley, Barbara [Centre for Industrial and Applied Mathematics, University of South Australia, Mawson Lakes Boulevard, Mawson Lakes, SA 5095 (Australia); Brown, Bruce [Department of Statistics and Applied Probability, National University of Singapore, Singapore 117546 (Singapore)
2008-04-15
For some locations both global and diffuse solar radiation are measured. However, for many locations, only global is measured, or inferred from satellite data. For modelling solar energy applications, the amount of radiation on a tilted surface is needed. Since only the direct component on a tilted surface can be calculated from trigonometry, we need to have diffuse on the horizontal available. There are regression relationships for estimating the diffuse on a tilted surface from diffuse on the horizontal. Models for estimating the diffuse radiation on the horizontal from horizontal global that have been developed in Europe or North America have proved to be inadequate for Australia [Spencer JW. A comparison of methods for estimating hourly diffuse solar radiation from global solar radiation. Sol Energy 1982; 29(1): 19-32]. Boland et al. [Modelling the diffuse fraction of global solar radiation on a horizontal surface. Environmetrics 2001; 12: 103-16] developed a validated model for Australian conditions. We detail our recent advances in developing the theoretical framework for the approach reported therein, particularly the use of the logistic function instead of piecewise linear or simple nonlinear functions. Additionally, we have also constructed a method, using quadratic programming, for identifying values that are likely to be erroneous. This allows us to eliminate outliers in diffuse radiation values, the data most prone to errors in measurement. (author)
Quantification of branching in model three-arm star polyethylene
Ramachandran, Ramnath
2012-01-24
The versatility of a novel scaling approach in quantifying the structure of model well-defined 3-arm star polyethylene molecules is presented. Many commercial polyethylenes have long side branches, and the nature and quantity of these branches varies widely among the various forms. For instance, low-density polyethylene (LDPE) is typically a highly branched structure with broad distributions in branch content, branch lengths and branch generation (in hyperbranched structures). This makes it difficult to accurately quantify the structure and the inherent structure-property relationships. To overcome this drawback, model well-defined hydrogenated polybutadiene (HPB) structures have been synthesized via anionic polymerization and hydrogenation to serve as model analogues to long-chain branched polyethylene. In this article, model 3-arm star polyethylene molecules are quantified using the scaling approach. Along with the long-chain branch content in polyethylene, the approach also provides unique measurements of long-chain branch length and hyperbranch content. Such detailed description facilitates better understanding of the effect of branching on the physical properties of polyethylene. © 2012 American Chemical Society.
Modeling of branching density and branching distribution in low-density polyethylene polymerization
Kim, D.M.; Iedema, P.D.
2008-01-01
Low-density polyethylene (ldPE) is a general purpose polymer with various applications. By this reason, many publications can be found on the ldPE polymerization modeling. However, scission reaction and branching distribution are only recently considered in the modeling studies due to difficulties
Directory of Open Access Journals (Sweden)
Mohammad Azimi
Full Text Available Diffusion plays a key role in many biochemical reaction systems seen in nature. Scenarios where diffusion behavior is critical can be seen in the cell and subcellular compartments where molecular crowding limits the interaction between particles. We investigate the application of a computational method for modeling the diffusion of molecules and macromolecules in three-dimensional solutions using agent based modeling. This method allows for realistic modeling of a system of particles with different properties such as size, diffusion coefficients, and affinity as well as the environment properties such as viscosity and geometry. Simulations using these movement probabilities yield behavior that mimics natural diffusion. Using this modeling framework, we simulate the effects of molecular crowding on effective diffusion and have validated the results of our model using Langevin dynamics simulations and note that they are in good agreement with previous experimental data. Furthermore, we investigate an extension of this framework where single discrete cells can contain multiple particles of varying size in an effort to highlight errors that can arise from discretization that lead to the unnatural behavior of particles undergoing diffusion. Subsequently, we explore various algorithms that differ in how they handle the movement of multiple particles per cell and suggest an algorithm that properly accommodates multiple particles of various sizes per cell that can replicate the natural behavior of these particles diffusing. Finally, we use the present modeling framework to investigate the effect of structural geometry on the directionality of diffusion in the cell cytoskeleton with the observation that parallel orientation in the structural geometry of actin filaments of filopodia and the branched structure of lamellipodia can give directionality to diffusion at the filopodia-lamellipodia interface.
Numerical study of a cylinder model of the diffusion MRI signal for neuronal dendrite trees
Van Nguyen, Dang; Grebenkov, Denis; Le Bihan, Denis; Li, Jing-Rebecca
2015-03-01
We study numerically how the neuronal dendrite tree structure can affect the diffusion magnetic resonance imaging (dMRI) signal in brain tissue. For a large set of randomly generated dendrite trees, synthetic dMRI signals are computed and fitted to a cylinder model to estimate the effective longitudinal diffusivity DL in the direction of neurites. When the dendrite branches are short compared to the diffusion length, DL depends significantly on the ratio between the average branch length and the diffusion length. In turn, DL has very weak dependence on the distribution of branch lengths and orientations of a dendrite tree, and the number of branches per node. We conclude that the cylinder model which ignores the connectivity of the dendrite tree, can still be adapted to describe the apparent diffusion coefficient in brain tissue.
Oak Ridge Gaseous Diffusion Plant Biological Monitoring and Abatement Program for Mitchell Branch
Energy Technology Data Exchange (ETDEWEB)
Loar, J.M.; Adams, S.M.; Kszos, L.A.; Ryon, M.G.; Smith, J.G.; Southworth, G.R.; Stewart, A.J.
1992-01-01
A proposed Biological Monitoring and Abatement Program (BMAP) for the Oak Ridge Gaseous Diffusion Plant (ORGDP; currently the Oak Ridge K-25 Site) was prepared in December 1986, as required by the modified National Pollutant Discharge Elimination System (NPDES) permit that was issued on September 11, 1986. The effluent discharges to Mitchell Branch are complex, consisting of trace elements, organic chemicals, and radionuclides in addition to various conventional pollutants. Moreover, the composition of these effluent streams will be changing over time as various pollution abatement measures are implemented over the next several years. Although contaminant inputs to the stream originate primarily as point sources from existing plant operations, area sources, such as the classified burial grounds and the K-1407-C holding pond, can not be eliminated as potential sources of contaminants. The proposed BMAP consists of four tasks. These tasks include (1) ambient toxicity testing, (2) bioaccumulation studies, (3) biological indicator studies, and (4) ecological surveys of the benthic invertebrate and fish communities. BMAP will determine whether the effluent limits established for ORGDP protect the designated use of the receiving stream (Mitchell Branch) for growth and propagation of fish and aquatic life. Another objective of the program is to document the ecological effects resulting from various pollution abatement projects, such as the Central Neutralization Facility.
In vivo facilitated diffusion model.
Directory of Open Access Journals (Sweden)
Maximilian Bauer
Full Text Available Under dilute in vitro conditions transcription factors rapidly locate their target sequence on DNA by using the facilitated diffusion mechanism. However, whether this strategy of alternating between three-dimensional bulk diffusion and one-dimensional sliding along the DNA contour is still beneficial in the crowded interior of cells is highly disputed. Here we use a simple model for the bacterial genome inside the cell and present a semi-analytical model for the in vivo target search of transcription factors within the facilitated diffusion framework. Without having to resort to extensive simulations we determine the mean search time of a lac repressor in a living E. coli cell by including parameters deduced from experimental measurements. The results agree very well with experimental findings, and thus the facilitated diffusion picture emerges as a quantitative approach to gene regulation in living bacteria cells. Furthermore we see that the search time is not very sensitive to the parameters characterizing the DNA configuration and that the cell seems to operate very close to optimal conditions for target localization. Local searches as implied by the colocalization mechanism are only found to mildly accelerate the mean search time within our model.
Branched Polymer Models and the Mechanism of Multilayer Film Buildup
Waduge, Pradeep; Khadka, Dhan; Haynie, Donald
2012-02-01
The ``in and out diffusion'' hypothesis does not provide a sufficient explanation of the exponential buildup displayed by some polyelectrolyte multilayer film systems. Here, we report initial tests of an alternative view, on which the completion of each adsorption cycle results in an increase in the number of polymer binding sites on the film surface. Polycationic dendrimeric peptides, which can potentially bind several oppositely-charged peptides each, have been designed, synthesized and utilized in comparative film buildup experiments. Material deposited, internal film structure and film surface morphology have been studied by ultraviolet spectroscopy (UVS), circular dichroism spectroscopy (CD), quartz crystal microbalance (QCM) and atomic force microscopy (AFM). Polycations tended to contribute more to film buildup than did polyanions on quartz but not on gold. Increasing the number of branches in the dendrimeric peptides from 4 to 8 reproducibly resulted in an increase in the film growth rate on quartz but not on gold. Peptide backbones tended to adopt a β-strand conformation on incorporation into a film. Thicker films had a greater surface roughness than thin films. The data are consistent with film buildup models in which the average number of polymer binding sites will increase with each successive adsorption cycle in the range where exponential growth is displayed.
Anomalous scaling in an age-dependent branching model
Keller-Schmidt, Stephanie; Tugrul, Murat; Eguíluz, Víctor M.; Hernández-García, Emilio; Klemm, Konstantin
2010-01-01
We introduce a one-parametric family of tree growth models, in which branching probabilities decrease with branch age $\\tau$ as $\\tau^{-\\alpha}$. Depending on the exponent $\\alpha$, the scaling of tree depth with tree size $n$ displays a transition between the logarithmic scaling of random trees and an algebraic growth. At the transition ($\\alpha=1$) tree depth grows as $(\\log n)^2$. This anomalous scaling is in good agreement with the trend observed in evolution of biological species, thus p...
Vere-Jones' self-similar branching model.
Saichev, A; Sornette, D
2005-11-01
Motivated by its potential application to earthquake statistics as well as for its intrinsic interest in the theory of branching processes, we study the exactly self-similar branching process introduced recently by Vere-Jones. This model extends the ETAS class of conditional self-excited branching point-processes of triggered seismicity by removing the problematic need for a minimum (as well as maximum) earthquake size. To make the theory convergent without the need for the usual ultraviolet and infrared cutoffs, the distribution of magnitudes m' of daughters of first-generation of a mother of magnitude m has two branches m m with exponent beta + d, where beta and d are two positive parameters. We investigate the condition and nature of the subcritical, critical, and supercritical regime in this and in an extended version interpolating smoothly between several models. We predict that the distribution of magnitudes of events triggered by a mother of magnitude m over all generations has also two branches m' sequences, we conclude that the two branches of the distribution of aftershocks are not directly observable and the model is compatible with real seismic catalogs. In summary, the exactly self-similar Vere-Jones model provides an attractive new approach to model triggered seismicity, which alleviates delicate questions on the role of magnitude cutoffs in other non-self-similar models. The new prediction concerning two branches in the distribution of magnitudes of aftershocks could be tested with recently introduced stochastic reconstruction methods, tailored to disentangle the different triggered sequences.
Modelling primary branch growth based on a multilevel nonlinear ...
African Journals Online (AJOL)
Model validation results using an independent data set confirmed that multilevel mixed models with an appropriate correlation structure produced more accurate and precise branch-specified diameter and length predictions. Overall, the models were suitable in describing the trends and inherent variability of crown profile ...
Positive branch of asteroid polarization: Observational data and computer modeling
Petrov, D. V.; Kiselev, N. N.
2017-07-01
Observations of near-Earth asteroids at large phase angles made it possible to obtain a more complete (for ground-based observations) phase dependence of the polarization of the E-type asteroids' radiation including the maximum of the positive branch of the linear polarization degree. It is shown that the position of the polarization maximum of high-albedo asteroids is noticeably shifted to the decrease of phase angles compared with S-type asteroids. Model calculations of polarimetric properties of random Gaussian particles that simulate dust particles on the regolith surface are carried out. Model calculations show a qualitatively similar behavior pattern of parameters of the positive polarization branch. The influence of the refractive index of individual scattering particles on the size and position of the maximum of the positive branch of the linear polarization degree is investigated within the considered model.
A spatially-averaged mathematical model of kidney branching morphogenesis
Zubkov, V.S.
2015-08-01
© 2015 Published by Elsevier Ltd. Kidney development is initiated by the outgrowth of an epithelial ureteric bud into a population of mesenchymal cells. Reciprocal morphogenetic responses between these two populations generate a highly branched epithelial ureteric tree with the mesenchyme differentiating into nephrons, the functional units of the kidney. While we understand some of the mechanisms involved, current knowledge fails to explain the variability of organ sizes and nephron endowment in mice and humans. Here we present a spatially-averaged mathematical model of kidney morphogenesis in which the growth of the two key populations is described by a system of time-dependant ordinary differential equations. We assume that branching is symmetric and is invoked when the number of epithelial cells per tip reaches a threshold value. This process continues until the number of mesenchymal cells falls below a critical value that triggers cessation of branching. The mathematical model and its predictions are validated against experimentally quantified C57Bl6 mouse embryonic kidneys. Numerical simulations are performed to determine how the final number of branches changes as key system parameters are varied (such as the growth rate of tip cells, mesenchyme cells, or component cell population exit rate). Our results predict that the developing kidney responds differently to loss of cap and tip cells. They also indicate that the final number of kidney branches is less sensitive to changes in the growth rate of the ureteric tip cells than to changes in the growth rate of the mesenchymal cells. By inference, increasing the growth rate of mesenchymal cells should maximise branch number. Our model also provides a framework for predicting the branching outcome when ureteric tip or mesenchyme cells change behaviour in response to different genetic or environmental developmental stresses.
Modelling the Diffusion of Scientific Publications
Ph.H.B.F. Franses (Philip Hans); D. Fok (Dennis)
2007-01-01
textabstractThis paper illustrates that salient features of a panel of time series of annual citations can be captured by a Bass type diffusion model. We put forward an extended version of this diffusion model, where we consider the relation between key characteristics of the diffusion process and
Modeling the diffusion of scientific publications
D. Fok (Dennis); Ph.H.B.F. Franses (Philip Hans)
2005-01-01
textabstractThis paper illustrates that salient features of a panel of time series of annual citations can be captured by a Bass type diffusion model. We put forward an extended version of this diffusion model, where we consider the relation between key characteristics of the diffusion process and
Anomalous scaling in an age-dependent branching model.
Keller-Schmidt, Stephanie; Tuğrul, Murat; Eguíluz, Víctor M; Hernández-García, Emilio; Klemm, Konstantin
2015-02-01
We introduce a one-parametric family of tree growth models, in which branching probabilities decrease with branch age τ as τ(-α). Depending on the exponent α, the scaling of tree depth with tree size n displays a transition between the logarithmic scaling of random trees and an algebraic growth. At the transition (α=1) tree depth grows as (logn)(2). This anomalous scaling is in good agreement with the trend observed in evolution of biological species, thus providing a theoretical support for age-dependent speciation and associating it to the occurrence of a critical point.
Fractal model of anomalous diffusion
Gmachowski, Lech
2015-01-01
An equation of motion is derived from fractal analysis of the Brownian particle trajectory in which the asymptotic fractal dimension of the trajectory has a required value. The formula makes it possible to calculate the time dependence of the mean square displacement for both short and long periods when the molecule diffuses anomalously. The anomalous diffusion which occurs after long periods is characterized by two variables, the transport coefficient and the anomalous diffusion exponent. An...
FDTD modeling of solar energy absorption in silicon branched nanowires.
Lundgren, Christin; Lopez, Rene; Redwing, Joan; Melde, Kathleen
2013-05-06
Thin film nanostructured photovoltaic cells are increasing in efficiency and decreasing the cost of solar energy. FDTD modeling of branched nanowire 'forests' are shown to have improved optical absorption in the visible and near-IR spectra over nanowire arrays alone, with a factor of 5 enhancement available at 1000 nm. Alternate BNW tree configurations are presented, achieving a maximum absorption of over 95% at 500 nm.
Diffusion in condensed matter methods, materials, models
Kärger, Jörg
2005-01-01
Diffusion as the process of particle transport due to stochastic movement is a phenomenon of crucial relevance for a large variety of processes and materials. This comprehensive, handbook- style survey of diffusion in condensed matter gives detailed insight into diffusion as the process of particle transport due to stochastic movement. Leading experts in the field describe in 23 chapters the different aspects of diffusion, covering microscopic and macroscopic experimental techniques and exemplary results for various classes of solids, liquids and interfaces as well as several theoretical concepts and models. Students and scientists in physics, chemistry, materials science, and biology will benefit from this detailed compilation.
Yuanyuan, Zhang
The stochastic branching model of multi-particle productions in high energy collision has theoretical basis in perturbative QCD, and also successfully describes the experimental data for a wide energy range. However, over the years, little attention has been put on the branching model for supersymmetric (SUSY) particles. In this thesis, a stochastic branching model has been built to describe the pure supersymmetric particle jets evolution. This model is a modified two-phase stochastic branching process, or more precisely a two phase Simple Birth Process plus Poisson Process. The general case that the jets contain both ordinary particle jets and supersymmetric particle jets has also been investigated. We get the multiplicity distribution of the general case, which contains a Hypergeometric function in its expression. We apply this new multiplicity distribution to the current experimental data of pp collision at center of mass energy √s = 0.9, 2.36, 7 TeV. The fitting shows the supersymmetric particles haven't participate branching at current collision energy.
Double diffusivity model under stochastic forcing
Chattopadhyay, Amit K.; Aifantis, Elias C.
2017-05-01
The "double diffusivity" model was proposed in the late 1970s, and reworked in the early 1980s, as a continuum counterpart to existing discrete models of diffusion corresponding to high diffusivity paths, such as grain boundaries and dislocation lines. It was later rejuvenated in the 1990s to interpret experimental results on diffusion in polycrystalline and nanocrystalline specimens where grain boundaries and triple grain boundary junctions act as high diffusivity paths. Technically, the model pans out as a system of coupled Fick-type diffusion equations to represent "regular" and "high" diffusivity paths with "source terms" accounting for the mass exchange between the two paths. The model remit was extended by analogy to describe flow in porous media with double porosity, as well as to model heat conduction in media with two nonequilibrium local temperature baths, e.g., ion and electron baths. Uncoupling of the two partial differential equations leads to a higher-ordered diffusion equation, solutions of which could be obtained in terms of classical diffusion equation solutions. Similar equations could also be derived within an "internal length" gradient (ILG) mechanics formulation applied to diffusion problems, i.e., by introducing nonlocal effects, together with inertia and viscosity, in a mechanics based formulation of diffusion theory. While being remarkably successful in studies related to various aspects of transport in inhomogeneous media with deterministic microstructures and nanostructures, its implications in the presence of stochasticity have not yet been considered. This issue becomes particularly important in the case of diffusion in nanopolycrystals whose deterministic ILG-based theoretical calculations predict a relaxation time that is only about one-tenth of the actual experimentally verified time scale. This article provides the "missing link" in this estimation by adding a vital element in the ILG structure, that of stochasticity, that takes into
Trait Characteristics of Diffusion Model Parameters
National Research Council Canada - National Science Library
Schubert, Anna-Lena; Frischkorn, Gidon; Hagemann, Dirk; Voss, Andreas
2016-01-01
... to individual differences in intelligence. However, if diffusion model parameters are to reflect trait-like properties of cognitive processes, they have to qualify as trait-like variables themselves, i.e...
DIFFUSION BACKGROUND MODEL FOR MOVING OBJECTS DETECTION
Directory of Open Access Journals (Sweden)
B. V. Vishnyakov
2015-05-01
Full Text Available In this paper, we propose a new approach for moving objects detection in video surveillance systems. It is based on construction of the regression diffusion maps for the image sequence. This approach is completely different from the state of the art approaches. We show that the motion analysis method, based on diffusion maps, allows objects that move with different speed or even stop for a short while to be uniformly detected. We show that proposed model is comparable to the most popular modern background models. We also show several ways of speeding up diffusion maps algorithm itself.
A Stochastic Diffusion Model of Climate Change
Pelletier, J D
1995-01-01
We present a model for variations in atmospheric temperature from time scales of one day to one million years based on a stochastic diffusion (random walk) model of the turbulent transport of heat energy vertically in a coupled atmosphere-ocean model. The predictions of the model are supported by station records and paleoclimatic proxy data of temperature variations.
[Biomass dynamics of tree branches of higher order. A model analysis].
Galitskiĭ, V V
2012-01-01
The sectional model of biomass dynamics of freely growing tree brahcnes of all orders is presented. The model is an extension of the sectional tree biomass model proposed earlier. The branches model showed bell-shaped dynamics of a branches biomass and, accordingly, boundedness of branch orders number. The important element of the model of branches system is the inter-verticil green biomass. The model is parameterized on the basis of published data on lifespan of branches of different orders and age in which the biomass of skeletal branches of spruce, Picea abies (L.) Karst, reaches the maximum. When adding known peculiarities of spruce growth (such as the initial growth inhibiton and presence of the inter-verticil branches) to the model of biomass dynamics of regular branches system, good appproximation of all natural data by model values is obtained. The possible mechanism of inter-verticil branches appearance in response to improvement of a tree growth conditions, and also their function in a tree growth process, namely replacement of regular branches incapable of appropriate response, is described. Initiation of appearing and/or waking of the sleeping (adventive) buds which give rise to inter-verticil branches is probably caused by rise of pressure of photosynthates in a tree phloem what the published results of experiments on a decapitaion of branches of Wollemia nobilis (Araucariaceae) also testify.
Stochastic models for surface diffusion of molecules
Energy Technology Data Exchange (ETDEWEB)
Shea, Patrick, E-mail: patrick.shea@dal.ca; Kreuzer, Hans Jürgen [Department of Physics and Atmospheric Science, Dalhousie University, Halifax, Nova Scotia B3H 3J5 (Canada)
2014-07-28
We derive a stochastic model for the surface diffusion of molecules, starting from the classical equations of motion for an N-atom molecule on a surface. The equation of motion becomes a generalized Langevin equation for the center of mass of the molecule, with a non-Markovian friction kernel. In the Markov approximation, a standard Langevin equation is recovered, and the effect of the molecular vibrations on the diffusion is seen to lead to an increase in the friction for center of mass motion. This effective friction has a simple form that depends on the curvature of the lowest energy diffusion path in the 3N-dimensional coordinate space. We also find that so long as the intramolecular forces are sufficiently strong, memory effects are usually not significant and the Markov approximation can be employed, resulting in a simple one-dimensional model that can account for the effect of the dynamics of the molecular vibrations on the diffusive motion.
Agent-based modelling of cholera diffusion
Augustijn-Beckers, Petronella; Doldersum, Tom; Useya, Juliana; Augustijn, Dionysius C.M.
2016-01-01
This paper introduces a spatially explicit agent-based simulation model for micro-scale cholera diffusion. The model simulates both an environmental reservoir of naturally occurring V.cholerae bacteria and hyperinfectious V. cholerae. Objective of the research is to test if runoff from open refuse
Multiphase Microfluidics The Diffuse Interface Model
2012-01-01
Multiphase flows are typically described assuming that the different phases are separated by a sharp interface, with appropriate boundary conditions. This approach breaks down whenever the lengthscale of the phenomenon that is being studied is comparable with the real interface thickness, as it happens, for example, in the coalescence and breakup of bubbles and drops, the wetting and dewetting of solid surfaces and, in general, im micro-devices. The diffuse interface model resolves these probems by assuming that all quantities can vary continuously, so that interfaces have a non-zero thickness, i.e. they are "diffuse". The contributions in this book review the theory and describe some relevant applications of the diffuse interface model for one-component, two-phase fluids and for liquid binary mixtures, to model multiphase flows in confined geometries.
Parameter estimation in fractional diffusion models
Kubilius, Kęstutis; Ralchenko, Kostiantyn
2017-01-01
This book is devoted to parameter estimation in diffusion models involving fractional Brownian motion and related processes. For many years now, standard Brownian motion has been (and still remains) a popular model of randomness used to investigate processes in the natural sciences, financial markets, and the economy. The substantial limitation in the use of stochastic diffusion models with Brownian motion is due to the fact that the motion has independent increments, and, therefore, the random noise it generates is “white,” i.e., uncorrelated. However, many processes in the natural sciences, computer networks and financial markets have long-term or short-term dependences, i.e., the correlations of random noise in these processes are non-zero, and slowly or rapidly decrease with time. In particular, models of financial markets demonstrate various kinds of memory and usually this memory is modeled by fractional Brownian diffusion. Therefore, the book constructs diffusion models with memory and provides s...
Diffusive description of lattice gas models
DEFF Research Database (Denmark)
Fiig, T.; Jensen, H.J.
1993-01-01
We have investigated a lattice gas model consisting of repulsive particles following deterministic dynamics. Two versions of the model are studied. In one case we consider a Finite open system in which particles can leave and enter the lattice over the edge. In the other case we use periodic...... in time. We have numerically investigated the power spectrum of the density fluctuations, the lifetime distribution, and the spatial correlation function. We discuss the appropriate Langevin-like diffusion equation which can reproduce our numerical findings. Our conclusion is that the deterministic...... lattice gases are described by a diffusion equation without any bulk noise. The open lattice gas exhibits a crossover behavior as the probability for introducing particles at the edge of the system becomes small. The power spectrum changes from a 1/f to a 1/f2 spectrum. The diffusive description, proven...
Gas diffusion in a pulmonary acinus model: experiments with hyperpolarized helium-3.
Habib, Dayane; Grebenkov, Denis; Guillot, Geneviève
2008-10-01
Diffusion of hyperpolarized helium-3 in epoxy phantoms was experimentally studied by pulsed-gradient nuclear magnetic resonance (NMR). One phantom with a dichotomic branching structure densely filling a cubic volume was built using the Kitaoka algorithm to model a healthy human acinus. Two other phantoms, one with a different size and the other one with a partial destruction of the branched structure, were built to simulate changes occurring at the early stages of emphysema. Gas pressure and composition (mixture with nitrogen) were varied, thus exploring different diffusion regimes. Preliminary measurements in a cylindrical glass cell allowed us to calibrate the gradient intensity with 1% accuracy. Measurements of NMR signal attenuation due to gas diffusion were compared to a classical Gaussian model and to Monte Carlo simulations. In the slow diffusion regime, the Gaussian model was in reasonable agreement with experiments for low gradient intensity, but there was a significant systematic deviation at larger gradient intensity. An apparent diffusion coefficient Dapp was deduced, and in agreement with previous findings, a linear decrease of Dapp/D0 with D0(1/2) was observed, where D0 is the free diffusion coefficient. In the regime of intermediate diffusion, experimental data could be described by the Gaussian model for very small gradient intensities only. The corresponding Dapp/D0 values seemed to reach a constant value. Monte Carlo simulations were generally in fair agreement with the measurements in both regimes. Our results suggest that, for diffusion times typical of medical magnetic resonance imaging, an increase in alveolar size has more impact on signal attenuation than a partial destruction of the branched structure at equivalent surface-to-volume ratio.
Fractional diffusion models of nonlocal transport
Energy Technology Data Exchange (ETDEWEB)
Del-Castillo-Negrete, Diego B [ORNL
2006-08-01
A class of nonlocal models based on the use of fractional derivatives (FDs) is proposed to describe nondiffusive transport in magnetically confined plasmas. FDs are integro-differential operators that incorporate in a unified framework asymmetric non-Fickian transport, non-Markovian ('memory') effects, and nondiffusive scaling. To overcome the limitations of fractional models in unbounded domains, we use regularized FDs that allow the incorporation of finite-size domain effects, boundary conditions, and variable diffusivities. We present an alpha-weighted explicit/implicit numerical integration scheme based on the Grunwald-Letnikov representation of the regularized fractional diffusion operator in flux conserving form. In sharp contrast with the standard diffusive model, the strong nonlocality of fractional diffusion leads to a linear in time response for a decaying pulse at short times. In addition, an anomalous fractional pinch is observed, accompanied by the development of an uphill transport region where the 'effective' diffusivity becomes negative. The fractional flux is in general asymmetric and, for steady states, it has a negative (toward the core) component that enhances confinement and a positive component that increases toward the edge and leads to poor confinement. The model exhibits the characteristic anomalous scaling of the confinement time, {tau}, with the system's size, L, {tau}{approx}L{sup {alpha}}, of low-confinement mode plasma where 1<{alpha}<2 is the order of the FD operator. Numerical solutions of the model with an off-axis source show that the fractional inward transport gives rise to profile peaking reminiscent of what is observed in tokamak discharges with auxiliary off-axis heating. Also, cold-pulse perturbations to steady states in the model exhibit fast, nondiffusive propagation phenomena that resemble perturbative experiments.
Fractional diffusion models of nonlocal transport
del-Castillo-Negrete, D.
2006-08-01
A class of nonlocal models based on the use of fractional derivatives (FDs) is proposed to describe nondiffusive transport in magnetically confined plasmas. FDs are integro-differential operators that incorporate in a unified framework asymmetric non-Fickian transport, non-Markovian ("memory") effects, and nondiffusive scaling. To overcome the limitations of fractional models in unbounded domains, we use regularized FDs that allow the incorporation of finite-size domain effects, boundary conditions, and variable diffusivities. We present an α-weighted explicit/implicit numerical integration scheme based on the Grunwald-Letnikov representation of the regularized fractional diffusion operator in flux conserving form. In sharp contrast with the standard diffusive model, the strong nonlocality of fractional diffusion leads to a linear in time response for a decaying pulse at short times. In addition, an anomalous fractional pinch is observed, accompanied by the development of an uphill transport region where the "effective" diffusivity becomes negative. The fractional flux is in general asymmetric and, for steady states, it has a negative (toward the core) component that enhances confinement and a positive component that increases toward the edge and leads to poor confinement. The model exhibits the characteristic anomalous scaling of the confinement time, τ, with the system's size, L, τ ˜Lα, of low-confinement mode plasma where 1<α<2 is the order of the FD operator. Numerical solutions of the model with an off-axis source show that the fractional inward transport gives rise to profile peaking reminiscent of what is observed in tokamak discharges with auxiliary off-axis heating. Also, cold-pulse perturbations to steady sates in the model exhibit fast, nondiffusive propagation phenomena that resemble perturbative experiments.
McCleery, W. Tyler; Mohd-Radzman, Nadiatul A.; Grieneisen, Veronica A.
Cells within tissues can be regarded as autonomous entities that respond to their local environment and signaling from neighbors. Cell coordination is particularly important in plants, where root architecture must strategically invest resources for growth to optimize nutrient acquisition. Thus, root cells are constantly adapting to environmental cues and neighbor communication in a non-linear manner. To explain such plasticity, we view the root as a swarm of coupled multi-cellular structures, ''metamers'', rather than as a continuum of identical cells. These metamers are individually programmed to achieve a local objective - developing a lateral root primordia, which aids in local foraging of nutrients. Collectively, such individual attempts may be halted, structuring root architecture as an emergent behavior. Each metamer's decision to branch is coordinated locally and globally through hormone signaling, including processes of controlled diffusion, active polar transport, and dynamic feedback. We present a physical model of the signaling mechanism that coordinates branching decisions in response to the environment. This work was funded by the European Commission 7th Framework Program, Project No. 601062, SWARM-ORGAN.
Optimal information diffusion in stochastic block models
Curato, Gianbiagio
2016-01-01
We use the linear threshold model to study the diffusion of information on a network generated by the stochastic block model. We focus our analysis on a two community structure where the initial set of informed nodes lies only in one of the two communities and we look for optimal network structures, i.e. those maximizing the asymptotic extent of the diffusion. We find that, constraining the mean degree and the fraction of initially informed nodes, the optimal structure can be assortative (modular), core-periphery, or even disassortative. We then look for minimal cost structures, i.e. those such that a minimal fraction of initially informed nodes is needed to trigger a global cascade. We find that the optimal networks are assortative but with a structure very close to a core-periphery graph, i.e. a very dense community linked to a much more sparsely connected periphery.
Microbial cell modeling via reacting diffusive particles
Plimpton, Steven J.; Slepoy, Alex
2005-01-01
We describe a particle-based simulator called ChemCell that we are developing with the goal of modeling the protein chemistry of biological cells for phenomena where spatial effects are important. Membranes and organelle structure are represented by triangulated surfaces. Diffusing particles represent proteins, complexes, or other biomolecules of interest. Particles interact with their neighbors in accord with Monte Carlo rules to perform biochemical reactions which can represent protein complex formation and dissociation, ligand binding, etc. In this brief paper we give the motivation for such a model, describe a few of the code's features, and highlight interesting computational issues that arise in particle-based cell modeling.
A gravitational diffusion model without dark matter
Britten, Roy J.
1998-01-01
In this model, without dark matter, the flat rotation curves of galaxies and the mass-to-light ratios of clusters of galaxies are described quantitatively. The hypothesis is that the agent of gravitational force is propagated as if it were scattered with a mean free path of ≈5 kiloparsecs. As a result, the force between moderately distant masses, separated by more than the mean free path, diminishes as the inverse first power of the distance, following diffusion equations, and describes the flat rotation curves of galaxies. The force between masses separated by <1 kiloparsec diminishes as the inverse square of distance. The excess gravitational force (ratio of 1/r:1/r2) increases with the scale of structures from galaxies to clusters of galaxies. However, there is reduced force at great distances because of the ≈12 billion years that has been available for diffusion to occur. This model with a mean free path of ≈5 kiloparsecs predicts a maximum excess force of a few hundredfold for objects the size of galactic clusters a few megaparsecs in size. With only a single free parameter, the predicted curve for excess gravitational force vs. size of structures fits reasonably well with observations from those for dwarf galaxies through galactic clusters. Under the diffusion model, no matter is proposed in addition to the observed baryons plus radiation and thus the proposed density of the universe is only a few percent of that required for closure. PMID:9520368
Growth model for large branched three-dimensional hydraulic crack system in gas or oil shale
Chau, Viet T.
2016-01-01
Recent analysis of gas outflow histories at wellheads shows that the hydraulic crack spacing must be of the order of 0.1 m (rather than 1 m or 10 m). Consequently, the existing models, limited to one or several cracks, are unrealistic. The reality is 105–106 almost vertical hydraulic cracks per fracking stage. Here, we study the growth of two intersecting near-orthogonal systems of parallel hydraulic cracks spaced at 0.1 m, preferably following pre-existing rock joints. One key idea is that, to model lateral cracks branching from a primary crack wall, crack pressurization, by viscous Poiseuille-type flow, of compressible (proppant-laden) frac water must be complemented with the pressurization of a sufficient volume of micropores and microcracks by Darcy-type water diffusion into the shale, to generate tension along existing crack walls, overcoming the strength limit of the cohesive-crack or crack-band model. A second key idea is that enforcing the equilibrium of stresses in cracks, pores and water, with the generation of tension in the solid phase, requires a new three-phase medium concept, which is transitional between Biot’s two-phase medium and Terzaghi’s effective stress and introduces the loading of the solid by pressure gradients of diffusing pore water. A computer program, combining finite elements for deformation and fracture with volume elements for water flow, is developed to validate the new model. This article is part of the themed issue ‘Energy and the subsurface’. PMID:27597791
Modeling the reemergence of information diffusion in social network
Yang, Dingda; Liao, Xiangwen; Shen, Huawei; Cheng, Xueqi; Chen, Guolong
2018-01-01
Information diffusion in networks is an important research topic in various fields. Existing studies either focus on modeling the process of information diffusion, e.g., independent cascade model and linear threshold model, or investigate information diffusion in networks with certain structural characteristics such as scale-free networks and small world networks. However, there are still several phenomena that have not been captured by existing information diffusion models. One of the prominent phenomena is the reemergence of information diffusion, i.e., a piece of information reemerges after the completion of its initial diffusion process. In this paper, we propose an optimized information diffusion model by introducing a new informed state into traditional susceptible-infected-removed model. We verify the proposed model via simulations in real-world social networks, and the results indicate that the model can reproduce the reemergence of information during the diffusion process.
Creatinine Diffusion Modeling in Capacitive Sensors
Mohabbati-Kalejahi, Elham; Azimirad, Vahid; Bahrami, Manouchehr
2016-12-01
In this paper, creatinine diffusion in capacitive sensors is discussed. The factors influencing the response time of creatinine biosensors are mathematically formulated and then three novel approaches for decreasing the response time are presented. At first, a piezoelectric actuator is used to vibrate the microtube that contains the blood sample, in order to reduce the viscosity of blood, and thus to increase the coefficient of diffusion. Then, the blood sample is assumed to be pushed through a porous medium, and the relevant conditions are investigated. Finally, the effect of the dentate shape of dielectric on response time is studied. The algorithms and the mathematical models are presented and discussed, and the results of simulations are illustrated. The response times for the first, second and third method are 60, 0.036 and about 31 s, respectively. It is also found that pumping results in very fast responses.
Costantini, Marcello
2014-01-01
uncommon to observe long periods of sinus rhythm with regular PP interval, conducted with alternating (2:1) bundle branch block. Intermittent left bundle branch block is a clinical model of cardiac memory: in these cases, negative T waves in the antero-septal leads during normal conduction are often evident. This negativity is an expression of cardiac memory, and not of ischemia as initially interpreted. Intermittent bundle branch block is an excellent model to study in vivo the effects of antiarrhythmic drugs on the pathological bundle branches. Narrowing of the QRS complex in the presence of bundle branch block is not always an expression of intermittent aberrancy: beware of late ectopic beats originating from the ipsilateral ventricle to the blocked branch, that merging with the antegrade beat conducted with bundle branch block, restrict the QRS, simulating intermittent aberrancy.
Modeling of Reaction Processes Controlled by Diffusion
Revelli, J
2003-01-01
Stochastic modeling is quite powerful in science and technology.The technics derived from this process have been used with great success in laser theory, biological systems and chemical reactions.Besides, they provide a theoretical framework for the analysis of experimental results on the field of particle's diffusion in ordered and disordered materials.In this work we analyze transport processes in one-dimensional fluctuating media, which are media that change their state in time.This fact induces changes in the movements of the particles giving rise to different phenomena and dynamics that will be described and analyzed in this work.We present some random walk models to describe these fluctuating media.These models include state transitions governed by different dynamical processes.We also analyze the trapping problem in a lattice by means of a simple model which predicts a resonance-like phenomenon.Also we study effective diffusion processes over surfaces due to random walks in the bulk.We consider differe...
Trends Prediction Using Social Diffusion Models
Altshuler, Yaniv; Pan, Wei; Pentland, Alex
2011-01-01
The importance of the ability to predict trends in social media has been growing rapidly in the past few years with the growing dominance of social media in our everyday’s life. Whereas many works focus on the detection of anomalies in networks, there exist little theoretical work on the prediction of the likelihood of anomalous network pattern to globally spread and become “trends”. In this work we present an analytic model for the social diffusion dynamics of spreading network patterns. Our...
Reaction-diffusion pulses: a combustion model
Energy Technology Data Exchange (ETDEWEB)
Campos, Daniel [Grup de FIsica EstadIstica, Dept. de FIsica, Universitat Autonoma de Barcelona, E-08193 Bellaterrra (Spain); Llebot, Josep Enric [Grup de FIsica EstadIstica, Dept. de FIsica, Universitat Autonoma de Barcelona, E-08193 Bellaterrra (Spain); Fort, Joaquim [Dept. de FIsica, Univ. de Girona, Campus de Montilivi, 17071 Girona, Catalonia (Spain)
2004-07-02
We focus on a reaction-diffusion approach proposed recently for experiments on combustion processes, where the heat released by combustion follows first-order reaction kinetics. This case allows us to perform an exhaustive analytical study. Specifically, we obtain the exact expressions for the speed of the thermal pulses, their maximum temperature and the condition of self-sustenance. Finally, we propose two generalizations of the model, namely, the case of several reactants burning together, and that of time-delayed heat conduction. We find an excellent agreement between our analytical results and simulations.
Ancestral process and diffusion model with selection
Mano, Shuhei
2008-01-01
The ancestral selection graph in population genetics introduced by Krone and Neuhauser (1997) is an analogue to the coalescent genealogy. The number of ancestral particles, backward in time, of a sample of genes is an ancestral process, which is a birth and death process with quadratic death and linear birth rate. In this paper an explicit form of the number of ancestral particle is obtained, by using the density of the allele frequency in the corresponding diffusion model obtained by Kimura (1955). It is shown that fixation is convergence of the ancestral process to the stationary measure. The time to fixation of an allele is studied in terms of the ancestral process.
The Voter Model and Jump Diffusion
Majmudar, Jimit; Baumgaertner, Bert O; Tyson, Rebecca C
2015-01-01
Opinions, and subsequently opinion dynamics, depend not just on interactions among individuals, but also on external influences such as the mass media. The dependence on local interactions, however, has received considerably more attention. In this paper, we use the classical voter model as a basis, and extend it to include external influences. We show that this new model can be understood using the theory of jump diffusion processes. We derive results pertaining to fixation probability and expected consensus time of the process, and find that the contribution of an external influence significantly dwarfs the contribution of the node-to-node interactions in terms of driving the social network to eventual consensus. This result suggests the potential importance of ``macro-level'' phenomena such as the media influence as compared to the ``micro-level'' local interactions, in modelling opinion dynamics.
Stochastic Modelling of the Diffusion Coefficient for Concrete
DEFF Research Database (Denmark)
Thoft-Christensen, Palle
In the paper, a new stochastic modelling of the diffusion coefficient D is presented. The modelling is based on physical understanding of the diffusion process and on some recent experimental results. The diffusion coefficients D is strongly dependent on the w/c ratio and the temperature....
Bass-SIR model for diffusion of new products
Fibich, Gadi
2016-01-01
We consider the diffusion of new products in social networks, where consumers who adopt the product can later "recover" and stop influencing others to adopt the product. We show that the diffusion is not described by the SIR model, but rather by a novel model, the Bass-SIR model, which combines the Bass model for diffusion of new products with the SIR model for epidemics. The phase transition of consumers from non-adopters to adopters is described by a non-standard Kolmogorov-Johnson-Mehl-Avrami model, in which clusters growth is limited by adopters' recovery. Therefore, diffusion in the Bass-SIR model only depends on the local structure of the social network, but not on the average distance between consumers. Consequently, unlike the SIR model, a small-worlds structure has a negligible effect on the diffusion. Surprisingly, diffusion on scale-free networks is nearly identical to that on Cartesian ones.
Extending the diffusion approximation to the boundary using an integrated diffusion model
Energy Technology Data Exchange (ETDEWEB)
Chen, Chen; Du, Zhidong; Pan, Liang, E-mail: liangpan@purdue.edu [School of Mechanical Engineering, Birck Nanotechnology Center, Purdue University, West Lafayette, Indiana 47907 (United States)
2015-06-15
The widely used diffusion approximation is inaccurate to describe the transport behaviors near surfaces and interfaces. To solve such stochastic processes, an integro-differential equation, such as the Boltzmann transport equation (BTE), is typically required. In this work, we show that it is possible to keep the simplicity of the diffusion approximation by introducing a nonlocal source term and a spatially varying diffusion coefficient. We apply the proposed integrated diffusion model (IDM) to a benchmark problem of heat conduction across a thin film to demonstrate its feasibility. We also validate the model when boundary reflections and uniform internal heat generation are present.
Extending the diffusion approximation to the boundary using an integrated diffusion model
Directory of Open Access Journals (Sweden)
Chen Chen
2015-06-01
Full Text Available The widely used diffusion approximation is inaccurate to describe the transport behaviors near surfaces and interfaces. To solve such stochastic processes, an integro-differential equation, such as the Boltzmann transport equation (BTE, is typically required. In this work, we show that it is possible to keep the simplicity of the diffusion approximation by introducing a nonlocal source term and a spatially varying diffusion coefficient. We apply the proposed integrated diffusion model (IDM to a benchmark problem of heat conduction across a thin film to demonstrate its feasibility. We also validate the model when boundary reflections and uniform internal heat generation are present.
Brodnick, Jacob; Richardson, Brian; Ramachandran, Narayanan
2015-01-01
The Low Profile Diffuser (LPD) project originated as an award from the Marshall Space Flight Center (MSFC) Advanced Development (ADO) office to the Main Propulsion Systems Branch (ER22). The task was created to develop and test an LPD concept that could produce comparable performance to a larger, traditionally designed, ullage gas diffuser while occupying a smaller volume envelope. Historically, ullage gas diffusers have been large, bulky devices that occupy a significant portion of the propellant tank, decreasing the tank volume available for propellant. Ullage pressurization of spacecraft propellant tanks is required to prevent boil-off of cryogenic propellants and to provide a positive pressure for propellant extraction. To achieve this, ullage gas diffusers must slow hot, high-pressure gas entering a propellant tank from supersonic speeds to only a few meters per second. Decreasing the incoming gas velocity is typically accomplished through expansion to larger areas within the diffuser which has traditionally led to large diffuser lengths. The Fluid Dynamics Branch (ER42) developed and applied advanced Computational Fluid Dynamics (CFD) analysis methods in order to mature the LPD design from and initial concept to an optimized test prototype and to provide extremely accurate pre-test predictions of diffuser performance. Additionally, the diffuser concept for the Core Stage of the Space Launch System (SLS) was analyzed in a short amount of time to guide test data collection efforts of the qualification of the device. CFD analysis of the SLS diffuser design provided new insights into the functioning of the device and was qualitatively validated against hot wire anemometry of the exterior flow field. Rigorous data analysis of the measurements was performed on static and dynamic pressure data, data from two microphones, accelerometers and hot wire anemometry with automated traverse. Feasibility of the LPD concept and validation of the computational model were
Particle-in-cell modeling of streamer branching in CO2 gas
Levko, Dmitry
2017-07-07
The mechanism of streamer branching remains one of the unsolved problems of low-temperature plasma physics. The understanding of this phenomenon requires very high-fidelity models that include, for instance, the kinetic description of electrons. In this paper, we use a two-dimensional particle-in-cell Monte Carlo collisional model to study the branching of anode-directed streamers propagating through short cathode-anode gap filled with atmospheric-pressure CO2 gas. We observe three key phenomena leading to the streamer branching at the considered conditions: flattening of the streamer head, the decrease of the streamer head thickness, and the generation at the streamer head of electrons having the energy larger than 50 eV. For the conditions of our studies, the non-homogeneous distribution of such energetic electrons at the streamer head is probably the primary mechanism responsible for the streamer branching.
CFD Modelling of Local Hemodynamics in Intracranial Aneurysms Harboring Arterial Branches.
Krylov, Vladimir; Grigoryeva, Elena; Dolotova, Daria; Blagosklonova, Evgenia; Gavrilov, Andrey
2017-01-01
The main cause of non-traumatic subarachnoid haemorrhage is an intracranial aneurysm's rupture. The choice of treatment approach is exceptionally difficult in cases of aneurysms with additional branches on the aneurysm's dome or neck. The impact of the arterial branches on local hemodynamics is still unclear and controversial question. At the same time, up-to-date methods of image processing and mathematical modeling provide a way to investigate the hemodynamic environment of aneurysms. The paper discusses hemodynamic aspects of aneurysms harboring arterial branch through the use of patient-specific 3D models and computational fluid dynamics (CFD) methods. The analysis showed that the presence of the arterial branches has a great influence on flow streamlines and wall shear stress, particularly for side wall aneurysm.
Energy Technology Data Exchange (ETDEWEB)
Liu, Yanfeng, E-mail: lyfxjd@163.com; Zhou, Xiaojun; Wang, Dengjia; Song, Cong; Liu, Jiaping
2015-12-15
Highlights: • Fractal theory is introduced into the prediction of VOC diffusion coefficient. • MSFC model of the diffusion coefficient is developed for porous building materials. • The MSFC model contains detailed pore structure parameters. • The accuracy of the MSFC model is verified by independent experiments. - Abstract: Most building materials are porous media, and the internal diffusion coefficients of such materials have an important influences on the emission characteristics of volatile organic compounds (VOCs). The pore structure of porous building materials has a significant impact on the diffusion coefficient. However, the complex structural characteristics bring great difficulties to the model development. The existing prediction models of the diffusion coefficient are flawed and need to be improved. Using scanning electron microscope (SEM) observations and mercury intrusion porosimetry (MIP) tests of typical porous building materials, this study developed a new diffusivity model: the multistage series-connection fractal capillary-bundle (MSFC) model. The model considers the variable-diameter capillaries formed by macropores connected in series as the main mass transfer paths, and the diameter distribution of the capillary bundles obeys a fractal power law in the cross section. In addition, the tortuosity of the macrocapillary segments with different diameters is obtained by the fractal theory. Mesopores serve as the connections between the macrocapillary segments rather than as the main mass transfer paths. The theoretical results obtained using the MSFC model yielded a highly accurate prediction of the diffusion coefficients and were in a good agreement with the VOC concentration measurements in the environmental test chamber.
Serenelli, A.; Weiss, A.; Cassisi, S.; Salaris, M.; Pietrinferni, A.
2017-10-01
Context. The brightness of the tip of the red giant branch is a useful reference quantity for several fields of astrophysics. An accurate theoretical prediction is needed for such purposes. Aims: We provide a solid theoretical prediction for the brightness of the tip of the red giant branch, valid for a reference set of standard physical assumptions, and mostly independent of numerical details. Methods: We examine the dependence on physical assumptions and numerical details for a wide range of metallicities and masses and based on two different stellar evolution codes. We adjust differences between the codes to treat the physics as identically as possible. After we have succeeded in reproducing the tip brightness between the codes, we present a reference set of models based on the most up to date physical inputs, but neglecting microscopic diffusion, and convert theoretical luminosities to observed infrared colours suitable for observations of resolved populations of stars and include analytic fits to facilitate their use. Results: We find that consistent use of updated nuclear reactions, including an appropriate treatment of the electron screening effects, and careful time-stepping on the upper red giant branch are the most important aspects to bring initially discrepant theoretical values into agreement. Small but visible differences remain unexplained for very low metallicities and mass values at and above 1.2 M⊙, corresponding to ages younger than 4 Gyr. The colour transformations introduce larger uncertainties than the differences between the two stellar evolution codes. Conclusions: We demonstrate that careful stellar modelling allows an accurate prediction for the luminosity of the red giant branch tip. Differences to empirically determined brightnesses may result either from insufficient colour transformations or from deficits in the constitutional physics. We present the best-tested theoretical reference values to date.
Matrix diffusion model. In situ tests using natural analogues
Energy Technology Data Exchange (ETDEWEB)
Rasilainen, K. [VTT Energy, Espoo (Finland)
1997-11-01
Matrix diffusion is an important retarding and dispersing mechanism for substances carried by groundwater in fractured bedrock. Natural analogues provide, unlike laboratory or field experiments, a possibility to test the model of matrix diffusion in situ over long periods of time. This thesis documents quantitative model tests against in situ observations, done to support modelling of matrix diffusion in performance assessments of nuclear waste repositories. 98 refs. The thesis includes also eight previous publications by author.
Stochastic continuous time neurite branching models with tree and segment dependent rates
van Elburg, Ronald A. J.
2011-01-01
In this paper we introduce a continuous time stochastic neurite branching model closely related to the discrete time stochastic BES-model. The discrete time BES-model is underlying current attempts to simulate cortical development, but is difficult to analyze. The new continuous time formulation
Pinte, Jérémy; Joly, Catherine; Dole, Patrice; Feigenbaum, Alexandre
2010-04-01
Published diffusion prediction models for the diffusion of additives in food packaging simplify reality by having a small number of parameters only. Therefore, extrapolation of such models to barrier polymers, larger ranges of temperature and/or additive molecular weight (M(W)) is questionable. Extra data is still required to generalize these existing prediction models. In this paper, diffusion of a specifically designed homologous set of model additives (from 236 to 1120 g mol(-1)) was monitored in two polystyrenes in the rubbery state (from 100 to 180 degrees C): syndiotactic semi-crystalline polystyrene and its amorphous equivalent. Variations in associated diffusion coefficient D and activation energy Ea with migrant M(W) and temperature were surprisingly low. Comparison of experimental behaviour with model predictions was performed. In their actual form, none of the models is capable of describing all experimental data, but there is evidence of convergence of the different approaches.
Zhou, Bingliang; Zhou, Jianbin; Zhang, Qisheng
2017-10-01
This study aims at investigating the pyrolysis behavior of Camellia sinensis branches by the Discrete Distributed Activation Energy Model (DAEM) and thermogravimetric experiments. Then the Discrete DAEM method is used to describe pyrolysis process of Camellia sinensis branches dominated by 12 characterized reactions. The decomposition mechanism of Camellia sinensis branches and interaction with components are observed. And the reaction at 350.77°C is a significant boundary of the first and second reaction range. The pyrolysis process of Camellia sinensis branches at the heating rate of 10,000°C/min is predicted and provides valuable references for gasification or combustion. The relationship and function between four typical indexes and heating rates from 10 to 10,000°C/min are revealed. Copyright © 2017 Elsevier Ltd. All rights reserved.
Anomalous diffusion of drug release from a slab matrix: fractional diffusion models.
Yin, Chen; Li, Xicheng
2011-10-10
Mathematical models for the release of drug from both non-degradable and degradable slab matrices in which the initial drug loading is greater than the solubility are presented in this paper. Taking the anomalous diffusions in the drug release processes into account, the fractional calculus is introduced to model the related phenomena. To describe different kinds of anomalous diffusions, corresponding fractional diffusion equations are adopted. By employing the integral transform methods, similarity solution method and perturbation method, exact and approximation solutions to the models are obtained. Copyright © 2010 Elsevier B.V. All rights reserved.
Mathematical Modeling of the Process for Microbial Production of Branched Chained Amino Acids
Directory of Open Access Journals (Sweden)
Todorov K.
2009-12-01
Full Text Available This article deals with modelling of branched chained amino acids production. One of important branched chained amino acid is L-valine. The aim of the article is synthesis of dynamic unstructured model of fed-batch fermentation process with intensive droppings for L-valine production. The presented approach of the investigation includes the following main procedures: description of the process by generalized stoichiometric equations; preliminary data processing and calculation of specific rates for main kinetic variables; identification of the specific rates takes into account the dissolved oxygen tension; establishment and optimisation of dynamic model of the process; simulation researches. MATLAB is used as a research environment.
Dou, Jianhong; Xia, Ling; Zhang, Yu; Shou, Guofa; Wei, Qing; Liu, Feng; Crozier, Stuart
2009-01-01
Asynchronous electrical activation, induced by bundle branch block (BBB), can cause reduced ventricular function. However, the effects of BBB on the mechanical function of heart are difficult to assess experimentally. Many heart models have been developed to investigate cardiac properties during BBB but have mainly focused on the electrophysiological properties. To date, the mechanical function of BBB has not been well investigated. Based on a three-dimensional electromechanical canine heart model, the mechanical properties of complete left and right bundle branch block (LBBB and RBBB) were simulated. The anatomical model as well as the fiber orientations of a dog heart was reconstructed from magnetic resonance imaging (MRI) and diffusion tensor MRI (DT-MRI). Using the solutions of reaction-diffusion equations and with a strategy of parallel computation, the asynchronous excitation propagation and intraventricular conduction in BBB was simulated. The mechanics of myocardial tissues were computed with time-, sarcomere length-dependent uniaxial active stress initiated at the time of depolarization. The quantification of mechanical intra- and interventricular asynchrony of BBB was then investigated using the finite-element method with an eight-node isoparametric element. The simulation results show that (1) there exists inter- and intraventricular systolic dyssynchrony during BBB; (2) RBBB may have more mechanical synchrony and better systolic function of the left ventricle (LV) than LBBB; (3) the ventricles always move toward the early-activated ventricle; and (4) the septum experiences higher stress than left and right ventricular free walls in BBB. The simulation results validate clinical and experimental recordings of heart deformation and provide regional quantitative estimates of ventricular wall strain and stress. The present work suggests that an electromechanical heart model, incorporating real geometry and fiber orientations, may be helpful for better
A return to the traveling salesman model: a network branch and bound approach
Directory of Open Access Journals (Sweden)
Elias Munapo
2013-02-01
Full Text Available This paper presents a network branch and bound approach for solving the traveling salesman problem. The problem is broken into sub-problems, each of which is solved as a minimum spanning tree model. This is easier to solve than either the linear programming-based or assignment models.
Radon diffusion through multilayer earthen covers: models and simulations
Energy Technology Data Exchange (ETDEWEB)
Mayer, D.W.; Oster, C.A.; Nelson, R.W.; Gee, G.W.
1981-09-01
A capability to model and analyze the fundamental interactions that influence the diffusion of radon gas through uranium mill tailings and cover systems has been investigated. The purpose of this study is to develop the theoretical basis for modeling radon diffusion and to develop an understanding of the fundamental interactions that influence radon diffusion. This study develops the theoretical basis for modeling radon diffusion in one, two and three dimensions. The theory has been incorporated into three computer models that are used to analyze several tailings and cover configurations. This report contains a discussion of the theoretical basis for modeling radon diffusion, a discussion of the computer models used to analyze uranium mill tailings and multilayered cover systems, and presents the results that have been obtained.
A variable-order fractal derivative model for anomalous diffusion
Directory of Open Access Journals (Sweden)
Liu Xiaoting
2017-01-01
Full Text Available This paper pays attention to develop a variable-order fractal derivative model for anomalous diffusion. Previous investigations have indicated that the medium structure, fractal dimension or porosity may change with time or space during solute transport processes, results in time or spatial dependent anomalous diffusion phenomena. Hereby, this study makes an attempt to introduce a variable-order fractal derivative diffusion model, in which the index of fractal derivative depends on temporal moment or spatial position, to characterize the above mentioned anomalous diffusion (or transport processes. Compared with other models, the main advantages in description and the physical explanation of new model are explored by numerical simulation. Further discussions on the dissimilitude such as computational efficiency, diffusion behavior and heavy tail phenomena of the new model and variable-order fractional derivative model are also offered.
One-dimensional diffusion model in an Inhomogeneous region
CSIR Research Space (South Africa)
Fedotov, I
2006-01-01
Full Text Available A one-dimensional model is developed to describe atomic diffusion in a graphite tube atomizer for electrothermal atomic adsorption spectrometry. The underlying idea of the model is the solution of an inhomogeneous one-dimensional diffusion equation...
Qualitative modelling macroeconomics indicators for prediction of progress branch
Directory of Open Access Journals (Sweden)
Jiří Luňáček
2010-01-01
Full Text Available A qualitative modelling philosophy has been developed in an effort to produce a general and reasonably unified common sense approach to the modelling of unique, complex and unsteady state systems. Economics, Ecology, Sociology and Politics are sciences, which study such systems. An integration of sub models from those sciences into supermodels is inevitable if realistic decision making tasks are analysed. Therefore conventional formal tools (e.g. statistics cannot be correctly applied because of lack of information. Qualitative variables are quantified using three values only – positive (increasing, zero (constant and negative (decreasing. Knowledge items of qualitative nature (e.g. if productivity goes up then profit does not decrease are often the only available information. The classical quantitative tools cannot deal with such information items. However, qualitative models can absorb shallow qualitative knowledge and generate all possible scenarios i.e. qualitative solutions. The complete list of scenarios guarantees that any analysis (decision making based on it does not ignore any promising solution. The case study of oil related macro economical risks is presented in details (15 variables e.g. Inflation, Corruption, 14 qualitative relations among the variables. No a priory knowledge of qualitative analysis is required.
Directory of Open Access Journals (Sweden)
Kai-Huai Li
2017-12-01
Full Text Available In bacteria, the metabolism of branched-chain amino acids (BCAAs is tightly associated with branched-chain fatty acids (BCFAs synthetic pathways. Although previous studies have reported on BCFAs biosynthesis, more detailed associations between BCAAs metabolism and BCFAs biosynthesis remain to be addressed. In this study, we deleted the ilvC gene, which encodes ketol-acid reductoisomerase in the BCAAs synthetic pathway, from the Xanthomonas campestris pv. campestris (Xcc genome. We characterized gene functions in BCFAs biosynthesis and production of the diffusible signal factor (DSF family signals. Disruption of ilvC caused Xcc to become auxotrophic for valine and isoleucine, and lose the ability to synthesize BCFAs via carbohydrate metabolism. Furthermore, ilvC mutant reduced the ability to produce DSF-family signals, especially branched-chain DSF-family signals, which might be the main reason for Xcc reduction of pathogenesis toward host plants. In this report, we confirmed that BCFAs do not have major functions in acclimatizing Xcc cells to low temperatures.
Varakin, A I; Mazur, V V; Arkhipova, N V; Serianov, Iu V
2009-01-01
Mathematical models of the transfer of charged macromolecules have been constructed on the basis of the classical equations of electromigration diffusion of Helmholtz-Smolukhovskii, Goldman, and Goldman-Hodgkin-Katz. It was shown that ion transfer in placental (mimicking lipid-protein barriers) and muscle barriers occurs by different mechanisms. In placental barriers, the electromigration diffusion occurs along lipid-protein channels formed due to the conformational deformation of phospholipid and protein molecules with the coefficients of diffusion D = (2.6-3.6) x 10(-8) cm2/s. The transfer in muscle barriers is due to the migration across charged interfibrillar channels with the negative diffusion activation energy, which is explained by changes in the structure of muscle fibers and expenditures of thermal energy for the extrusion of Cl- from channel walls with the diffusion coefficient D = (6.0-10.0) x 10(-6) cm2/s.
Asymptotic solutions of diffusion models for risk reserves
Directory of Open Access Journals (Sweden)
S. Shao
2003-01-01
Full Text Available We study a family of diffusion models for risk reserves which account for the investment income earned and for the inflation experienced on claim amounts. After we defined the process of the conditional probability of ruin over finite time and imposed the appropriate boundary conditions, classical results from the theory of diffusion processes turn the stochastic differential equation to a special class of initial and boundary value problems defined by a linear diffusion equation. Armed with asymptotic analysis and perturbation theory, we obtain the asymptotic solutions of the diffusion models (possibly degenerate governing the conditional probability of ruin over a finite time in terms of interest rate.
Stochastic modeling of the diffusion coefficient for concrete
DEFF Research Database (Denmark)
Thoft-Christensen, Palle
. A deterministic relationship between the diffusion coefficient and the w/c ratio and the temperature is used for the stochastic modelling. The w/c ratio and the temperature are modelled by log-normally and normally distributed stochastic variables, respectively. It is then shown by Monte Carlo simulation...... that the diffusion coefficient D may be modelled by a normally distributed stochastic variable. The sensitivities of D with regard to the mean values and the standard deviations are evaluated.......In the paper, a new stochastic modelling of the diffusion coefficient D is presented. The modelling is based on a physical understanding of the diffusion process and on some recent experimental results. The diffusion coefficient D is strongly dependent on the w/c ratio and the temperature...
A memory diffusion model for molecular anisotropic diffusion in siliceous β-zeolite.
Ji, Xiangfei; An, Zhuanzhuan; Yang, Xiaofeng
2016-01-01
A memory diffusion model of molecules on β-zeolite is proposed. In the model, molecular diffusion in β-zeolites is treated as jumping from one adsorption site to its neighbors and the jumping probability is a compound probability which includes that provided by the transitional state theory as well as that derived from the information about which direction the target molecule comes from. The proposed approach reveals that the diffusivities along two crystal axes on β-zeolite are correlated. The model is tested by molecular dynamics simulations on diffusion of benzene and other simple molecules in β-zeolites. The results show that the molecules with larger diameters fit the prediction much better and that the "memory effects" are important in all cases.
Fractional diffusion models of transport in magnetically confined plasmas
Energy Technology Data Exchange (ETDEWEB)
Castillo-Negrete, D. del; Carreras, B. A.; Lynch, V. E.
2005-07-01
Experimental and theoretical evidence suggests that transport in magnetically confined fusion plasmas deviates from the standard diffusion paradigm. Some examples include the confinement time scaling in L-mode plasmas, rapid pulse propagation phenomena, and inward transport in off-axis fueling experiments. The limitations of the diffusion paradigm can be traced back to the restrictive assumptions in which it is based. In particular, Fick's law, one of the cornerstones of diffusive transport, assumes that the fluxes only depend on local quantities, i. e. the spatial gradient of the field (s). another key issue is the Markovian assumption that neglects memory effects. Also, at a microscopic level, standard diffusion assumes and underlying Gaussian, uncorrelated stochastic process (i. e. a Brownian random walk) with well defined characteristic spatio-temporal scales. Motivated by the need to develop models of non-diffusive transport, we discuss here a class of transport models base on the use of fractional derivative operators. The models incorporates in a unified way non-Fickian transport, non-Markovian processes or memory effects, and non-diffusive scaling. At a microscopic level, the models describe an underlying stochastic process without characteristic spatio-temporal scales that generalizes the Brownian random walk. As a concrete case study to motivate and test the model, we consider transport of tracers in three-dimensional, pressure-gradient-driven turbulence. We show that in this system transport is non-diffusive and cannot be described in the context of the standard diffusion parading. In particular, the probability density function (pdf) of the radial displacements of tracers is strongly non-Gaussian with algebraic decaying tails, and the moments of the tracer displacements exhibit super-diffusive scaling. there is quantitative agreement between the turbulence transport calculations and the proposed fractional diffusion model. In particular, the model
Dynamic hysteresis modeling including skin effect using diffusion equation model
Energy Technology Data Exchange (ETDEWEB)
Hamada, Souad, E-mail: souadhamada@yahoo.fr [LSP-IE: Research Laboratory, Electrical Engineering Department, University of Batna, 05000 Batna (Algeria); Louai, Fatima Zohra, E-mail: fz_louai@yahoo.com [LSP-IE: Research Laboratory, Electrical Engineering Department, University of Batna, 05000 Batna (Algeria); Nait-Said, Nasreddine, E-mail: n_naitsaid@yahoo.com [LSP-IE: Research Laboratory, Electrical Engineering Department, University of Batna, 05000 Batna (Algeria); Benabou, Abdelkader, E-mail: Abdelkader.Benabou@univ-lille1.fr [L2EP, Université de Lille1, 59655 Villeneuve d’Ascq (France)
2016-07-15
An improved dynamic hysteresis model is proposed for the prediction of hysteresis loop of electrical steel up to mean frequencies, taking into account the skin effect. In previous works, the analytical solution of the diffusion equation for low frequency (DELF) was coupled with the inverse static Jiles-Atherton (JA) model in order to represent the hysteresis behavior for a lamination. In the present paper, this approach is improved to ensure the reproducibility of measured hysteresis loops at mean frequency. The results of simulation are compared with the experimental ones. The selected results for frequencies 50 Hz, 100 Hz, 200 Hz and 400 Hz are presented and discussed.
Modelling genetic regulation of growth and form in a branching sponge
Kaandorp, J.A.; Blom, J.G.; Verhoef, J.; Filatov, M.; Postma, M.; Müller, W.E.G.
2008-01-01
We present a mathematical model of the genetic regulation controlling skeletogenesis and the influence of the physical environment on a branching sponge with accretive growth (e.g. Haliclona oculata or Lubomirskia baikalensis). From previous work, it is known that high concentrations of silicate
Modelling genetic regulation of growth and form in a branching sponge
J.A. Kaandorp (Jaap); J.G. Blom (Joke); J. Verhoef; M. Filatov; M. Postma; W.E.G. Müller (Werner)
2008-01-01
htmlabstractWe present a mathematical model of the genetic regulation controlling skeletogenesis and the influence of the physical environment on a branching sponge with accretive growth (e.g. Haliclona oculata or Lubomirskia baikalensis). From previous work, it is known that high concentrations of
Kevin T. Smith
2012-01-01
The recent article "Towards a new model of branch attachment" by D. Slater and C. Harbinson (Arboricultural Journal (2010), 33, pp. 95-105) criticises strongly the model of branch attachment described by Dr Alex Shigo in 1985. As I recall, my first glimpse of Shigo's model was literally drawn on the back of an airline cocktail napkin. He rushed into the...
An Associational Model for the Diffusion of Complex Innovations.
Barnett, George A.
A paradigm for the study of the diffusion of complex innovations through a society is presented in this paper; the paradigm is useful for studying sociocultural change as innovations diffuse. The model is designed to account for change within social systems rather than in individuals, although it would also be consistent with information…
A stepped leader model for lightning including charge distribution in branched channels
Energy Technology Data Exchange (ETDEWEB)
Shi, Wei; Zhang, Li [School of Electrical Engineering, Shandong University, Jinan 250061 (China); Li, Qingmin, E-mail: lqmeee@ncepu.edu.cn [Beijing Key Lab of HV and EMC, North China Electric Power University, Beijing 102206 (China); State Key Lab of Alternate Electrical Power System with Renewable Energy Sources, Beijing 102206 (China)
2014-09-14
The stepped leader process in negative cloud-to-ground lightning plays a vital role in lightning protection analysis. As lightning discharge usually presents significant branched or tortuous channels, the charge distribution along the branched channels and the stochastic feature of stepped leader propagation were investigated in this paper. The charge density along the leader channel and the charge in the leader tip for each lightning branch were approximated by introducing branch correlation coefficients. In combination with geometric characteristics of natural lightning discharge, a stochastic stepped leader propagation model was presented based on the fractal theory. By comparing simulation results with the statistics of natural lightning discharges, it was found that the fractal dimension of lightning trajectory in simulation was in the range of that observed in nature and the calculation results of electric field at ground level were in good agreement with the measurements of a negative flash, which shows the validity of this proposed model. Furthermore, a new equation to estimate the lightning striking distance to flat ground was suggested based on the present model. The striking distance obtained by this new equation is smaller than the value estimated by previous equations, which indicates that the traditional equations may somewhat overestimate the attractive effect of the ground.
Sound field modeling in architectural acoustics using a diffusion equation
Picaut, Judicaël; Valeau, Vincent; Billon, Alexis; Sakout, Anas
2006-01-01
A numerical approach is proposed to model the reverberated sound field in rooms. The model is based on the numerical implementation of a diffusion model enabling spatial variations of the sound energy within a room, unlike the statistical theory. The proposed method allows to take into account most of complex phenomena encountered in room acoustics, like mixed reflections on walls (diffuse and specular), low and high absorption on walls, atmospheric attenuation, fitted zones. Moreover, the mo...
Sound field modeling in architectural acoustics using a diffusion equation
PICAUT, J; VALEAU, V; BILLON, A; SAKOUT, A
2006-01-01
A numerical approach is proposed to model the reverberated sound field in rooms. The model is based on the numerical implementation of a diffusion model enabling spatial variations of the sound energy within a room, unlike the statistical theory. The proposed method allows to take into account most of complex phenomena encountered in room acoustics, like mixed reflections on walls (diffuse and specular), low and high absorption on walls, atmospheric attenation, fitted zones. Moreover, the mod...
Modelling of diffuse solar fraction with multiple predictors
Energy Technology Data Exchange (ETDEWEB)
Ridley, Barbara; Boland, John [Centre for Industrial and Applied Mathematics, University of South Australia, Mawson Lakes Boulevard, Mawson Lakes, SA 5095 (Australia); Lauret, Philippe [Laboratoire de Physique du Batiment et des Systemes, University of La Reunion, Reunion (France)
2010-02-15
For some locations both global and diffuse solar radiation are measured. However, for many locations, only global radiation is measured, or inferred from satellite data. For modelling solar energy applications, the amount of radiation on a tilted surface is needed. Since only the direct component on a tilted surface can be calculated from direct on some other plane using trigonometry, we need to have diffuse radiation on the horizontal plane available. There are regression relationships for estimating the diffuse on a tilted surface from diffuse on the horizontal. Models for estimating the diffuse on the horizontal from horizontal global that have been developed in Europe or North America have proved to be inadequate for Australia. Boland et al. developed a validated model for Australian conditions. Boland et al. detailed our recent advances in developing the theoretical framework for the use of the logistic function instead of piecewise linear or simple nonlinear functions and was the first step in identifying the means for developing a generic model for estimating diffuse from global and other predictors. We have developed a multiple predictor model, which is much simpler than previous models, and uses hourly clearness index, daily clearness index, solar altitude, apparent solar time and a measure of persistence of global radiation level as predictors. This model performs marginally better than currently used models for locations in the Northern Hemisphere and substantially better for Southern Hemisphere locations. We suggest it can be used as a universal model. (author)
CROSS DIFFUSION AND NONLINEAR DIFFUSION PREVENTING BLOW UP IN THE KELLER–SEGEL MODEL
CARRILLO, JOSÉ ANTONIO
2012-12-01
A parabolic-parabolic (Patlak-)Keller-Segel model in up to three space dimensions with nonlinear cell diffusion and an additional nonlinear cross-diffusion term is analyzed. The main feature of this model is that there exists a new entropy functional, yielding gradient estimates for the cell density and chemical concentration. For arbitrarily small cross-diffusion coefficients and for suitable exponents of the nonlinear diffusion terms, the global-in-time existence of weak solutions is proved, thus preventing finite-time blow up of the cell density. The global existence result also holds for linear and fast diffusion of the cell density in a certain parameter range in three dimensions. Furthermore, we show L∞ bounds for the solutions to the parabolic-elliptic system. Sufficient conditions leading to the asymptotic stability of the constant steady state are given for a particular choice of the nonlinear diffusion exponents. Numerical experiments in two and three space dimensions illustrate the theoretical results. © 2012 World Scientific Publishing Company.
What Can the Diffusion Model Tell Us About Prospective Memory?
Horn, Sebastian S.; Bayen, Ute J.; Smith, Rebekah E.
2011-01-01
Cognitive process models, such as Ratcliff’s (1978) diffusion model, are useful tools for examining cost- or interference effects in event-based prospective memory (PM). The diffusion model includes several parameters that provide insight into how and why ongoing-task performance may be affected by a PM task and is ideally suited to analyze performance because both reaction time and accuracy are taken into account. Separate analyses of these measures can easily yield misleading interpretations in cases of speed-accuracy tradeoffs. The diffusion model allows us to measure possible criterion shifts and is thus an important methodological improvement over standard analyses. Performance in an ongoing lexical decision task (Smith, 2003) was analyzed with the diffusion model. The results suggest that criterion shifts play an important role when a PM task is added, but do not fully explain the cost effect on RT. PMID:21443332
"Antelope": a hybrid-logic model checker for branching-time Boolean GRN analysis
Directory of Open Access Journals (Sweden)
Arellano Gustavo
2011-12-01
Full Text Available Abstract Background In Thomas' formalism for modeling gene regulatory networks (GRNs, branching time, where a state can have more than one possible future, plays a prominent role. By representing a certain degree of unpredictability, branching time can model several important phenomena, such as (a asynchrony, (b incompletely specified behavior, and (c interaction with the environment. Introducing more than one possible future for a state, however, creates a difficulty for ordinary simulators, because infinitely many paths may appear, limiting ordinary simulators to statistical conclusions. Model checkers for branching time, by contrast, are able to prove properties in the presence of infinitely many paths. Results We have developed Antelope ("Analysis of Networks through TEmporal-LOgic sPEcifications", http://turing.iimas.unam.mx:8080/AntelopeWEB/, a model checker for analyzing and constructing Boolean GRNs. Currently, software systems for Boolean GRNs use branching time almost exclusively for asynchrony. Antelope, by contrast, also uses branching time for incompletely specified behavior and environment interaction. We show the usefulness of modeling these two phenomena in the development of a Boolean GRN of the Arabidopsis thaliana root stem cell niche. There are two obstacles to a direct approach when applying model checking to Boolean GRN analysis. First, ordinary model checkers normally only verify whether or not a given set of model states has a given property. In comparison, a model checker for Boolean GRNs is preferable if it reports the set of states having a desired property. Second, for efficiency, the expressiveness of many model checkers is limited, resulting in the inability to express some interesting properties of Boolean GRNs. Antelope tries to overcome these two drawbacks: Apart from reporting the set of all states having a given property, our model checker can express, at the expense of efficiency, some properties that ordinary
Weak diffusion limits of dynamic conditional correlation models
DEFF Research Database (Denmark)
Hafner, Christian M.; Laurent, Sebastien; Violante, Francesco
The properties of dynamic conditional correlation (DCC) models are still not entirely understood. This paper fills one of the gaps by deriving weak diffusion limits of a modified version of the classical DCC model. The limiting system of stochastic differential equations is characterized...... by a diffusion matrix of reduced rank. The degeneracy is due to perfect collinearity between the innovations of the volatility and correlation dynamics. For the special case of constant conditional correlations, a non-degenerate diffusion limit can be obtained. Alternative sets of conditions are considered...
Smith, Rachel A; Kim, Youllee; Zhu, Xun; Doudou, Dimi Théodore; Sternberg, Eleanore D; Thomas, Matthew B
2018-02-15
This study documents an investigation into the adoption and diffusion of eave tubes, a novel mosquito vector control, during a large-scale scientific field trial in West Africa. The diffusion of innovations (DOI) and the integrated model of behavior (IMB) were integrated (i.e., innovation attributes with attitudes and social pressures with norms) to predict participants' (N = 329) diffusion intentions. The findings showed that positive attitudes about the innovation's attributes were a consistent positive predictor of diffusion intentions: adopting it, maintaining it, and talking with others about it. As expected by the DOI and the IMB, the social pressure created by a descriptive norm positively predicted intentions to adopt and maintain the innovation. Drawing upon sharing research, we argued that the descriptive norm may dampen future talk about the innovation, because it may no longer be seen as a novel, useful topic to discuss. As predicted, the results showed that as the descriptive norm increased, the intention to talk about the innovation decreased. These results provide broad support for integrating the DOI and the IMB to predict diffusion and for efforts to draw on other research to understand motivations for social diffusion.
Modeling dendrite density from magnetic resonance diffusion measurements
DEFF Research Database (Denmark)
Jespersen, Sune Nørhøj; Kroenke, CD; Østergaard, Leif
2007-01-01
.e., in extracellular space and glia cells. The model parameters are estimated from 153 diffusion-weighted images acquired from a formalin-fixed baboon brain. A close correspondence between the data and the signal model is found, with the model parameters consistent with literature values. The model provides...
Morgan, D. J.; Chamberlain, K. J.; Kahl, M.; Potts, N. J.; Pankhurst, M. J.; Wilson, C. J. N.
2014-12-01
Over the past 20 years, diffusion chronometers have evolved from a niche tool into one of routine application, with more practitioners, new tools and increasingly large datasets. As we expand the horizons of diffusional geochronometry, it is worth taking stock of developments in methodologies and data acquisition, and taking time to revisit the underpinnings of the technique. Data collected as part of recent projects on Campi Flegrei, the Bishop Tuff and Fimmvörðuháls-Eyjafjallajökull are here used to investigate the initial state assumption, an absolutely vital aspect underpinning most diffusional work and one that is rarely evaluated despite its fundamental importance. To illustrate the nature of the problem we consider two widely-used element-mineral systems for felsic and mafic systems, respectively. First, barium and strontium profiles within sanidine crystals, modelled independently, can give strongly contrasting timescales from the same crystal zone. We can reconcile the datasets only for a situation where the initial boundary within the crystal was not a sharp step function, but relatively fuzzy before diffusion onset. This fuzziness effectively starts both chronometers off with an apparent, and false, pre-existing timescale, impacting the slower-diffusing barium much more strongly than the faster-diffusing strontium, yielding thousands of years of non-existent diffusion history. By combining both elements, a starting width of tens of microns can be shown, shortening the true diffusive timescales from tens of thousands of years to hundreds. Second, in olivine, we encounter different growth-related problems. Here, Fe-Mg interdiffusion occurs at a rate comparable to growth, with the compound nature of zonation making it difficult to extract the diffusion component. This requires a treatment of changing boundary conditions and sequential growth to generate the curvature seen in natural data, in order to recover timescales for anything but the outermost
Normand, Frédéric; Lauri, Pierre-Éric
2012-03-01
Accurate and reliable predictive models are necessary to estimate nondestructively key variables for plant growth studies such as leaf area and leaf, stem, and total biomass. Predictive models are lacking at the current-year branch scale despite the importance of this scale in plant science. We calibrated allometric models to estimate leaf area and stem and branch (leaves + stem) mass of current-year branches, i.e., branches several months old studied at the end of the vegetative growth season, of four mango cultivars on the basis of their basal cross-sectional area. The effects of year, site, and cultivar were tested. Models were validated with independent data and prediction accuracy was evaluated with the appropriate statistics. Models revealed a positive allometry between dependent and independent variables, whose y-intercept but not the slope, was affected by the cultivar. The effects of year and site were negligible. For each branch characteristic, cultivar-specific models were more accurate than common models built with pooled data from the four cultivars. Prediction quality was satisfactory but with data dispersion around the models, particularly for large values. Leaf area and stem and branch mass of mango current-year branches could be satisfactorily estimated on the basis of branch basal cross-sectional area with cultivar-specific allometric models. The results suggested that, in addition to the heteroscedastic behavior of the variables studied, model accuracy was probably related to the functional plasticity of branches in relation to the light environment and/or to the number of growth units composing the branches.
Gierl, Heribert
1995-01-01
Diffusion. - In: Handwörterbuch des Marketing / hrsg. von Bruno Tietz ... - 2., völlig neu gestalt. Aufl. - Stuttgart : Schäffer-Poeschel, 1995. - S. 469-477. - (Enzyklopädie der Betriebswirtschaftslehre ; 4)
Modelling Urban diffuse pollution in groundwater
Jato, Musa; Smith, Martin; Cundy, Andrew
2017-04-01
Diffuse urban pollution of surface and ground waters is a growing concern in many cities and towns. Traffic-derived pollutants such as salts, heavy metals and polycyclic aromatic hydrocarbons (PAHs) may wash off road surfaces in soluble or particulate forms which later drain through soils and drainage systems into surface waters and groundwater. In Brighton, about 90% of drinking water supply comes from groundwater (derived from the Brighton Chalk block). In common with many groundwater sources the Chalk aquifer has been relatively extensively monitored and assessed for diffuse rural contaminants such as nitrate, but knowledge on the extent of contamination from road run-off is currently lacking. This project examines the transfer of traffic-derived contaminants from the road surface to the Chalk aquifer, via urban drainage systems. A transect of five boreholes have been sampled on a monthly basis and groundwater samples analysed to examine the concentrations of key, mainly road run-off derived, hydrocarbon and heavy metal contaminants in groundwater across the Brighton area. Trace concentrations of heavy metals and phenols have been observed in groundwater. Electrical conductivity changes in groundwater have also been used to assess local changes in ionic strength which may be associated with road-derived contaminants. This has been supplemented by systematic water and sediment sampling from urban gully pots, with further sampling planned from drainage and settlement ponds adjacent to major roads, to examine initial road to drainage system transport of major contaminants.
THE BANKRUPT RISK IN FEED DISTRIBUTION BRANCH IN DOLJ DISTRICT – FDR MODEL
Directory of Open Access Journals (Sweden)
Ovidiu CĂPRARIU
2010-01-01
Full Text Available Abstract:In this article, we are intending to present a score function in order to calculate the bankrupt risk for a special domain: feed distribution.All analysis models of the bankruptcy risk have at their basis a score function according to which it is determined with approximation whether the company would get bankruptcy or would have performing economic results, in a period immediately following the analysis.Having a personal analysis in feed distribution branch, I elaborated a score function for counting bankrupt risk, based on financial and non-financial studies of many companies and we called this model “Feed Distribution Risk Model” (FDR. The target was to obtain a high level of precision, so I choose the feed industry and more specific only feed distribution branch and I analyzed statistics about the evolution of the feed distribution companies in Romania and about the normal level of some financial or non-financial indicators for these companies.I have choose five feed distribution companies and I counted two international score functions and two Romanian score function with FDR function. Finally, I concluded that the three main differences between the classic models and this one are that the FDR model is for a specified branch – the feed distribution, it uses an important number of indicators and uses non-financial indicators, which explain the shareholders bonity. As directions to continue the investigations, I propose the elaboration of another models for other branches and adjust the financial information with true dates.
Evaluation of the Thermodynamic Models for the Thermal Diffusion Factor
DEFF Research Database (Denmark)
Gonzalez-Bagnoli, Mariana G.; Shapiro, Alexander; Stenby, Erling Halfdan
2003-01-01
Over the years, several thermodynamic models for the thermal diffusion factors for binary mixtures have been proposed. The goal of this paper is to test some of these models in combination with different equations of state. We tested the following models: those proposed by Rutherford and Drickamer...... we applied different thermodynamic models, such as the Soave-Redlich-Kwong and the Peng-Robinson equations of state. The necessity to try different thermo-dynamic models is caused by the high sensitivity of the thermal diffusion factors to the values of the partial molar properties. Two different...
Derrida's Generalized Random Energy models; 4, Continuous state branching and coalescents
Bovier, A
2003-01-01
In this paper we conclude our analysis of Derrida's Generalized Random Energy Models (GREM) by identifying the thermodynamic limit with a one-parameter family of probability measures related to a continuous state branching process introduced by Neveu. Using a construction introduced by Bertoin and Le Gall in terms of a coherent family of subordinators related to Neveu's branching process, we show how the Gibbs geometry of the limiting Gibbs measure is given in terms of the genealogy of this process via a deterministic time-change. This construction is fully universal in that all different models (characterized by the covariance of the underlying Gaussian process) differ only through that time change, which in turn is expressed in terms of Parisi's overlap distribution. The proof uses strongly the Ghirlanda-Guerra identities that impose the structure of Neveu's process as the only possible asymptotic random mechanism.
Mockler, Eva; Reaney, Simeon; Mellander, Per-Erik; Wade, Andrew; Collins, Adrian; Arheimer, Berit; Bruen, Michael
2017-04-01
The agricultural sector is the most common suspected source of nutrient pollution in Irish rivers. However, it is also often the most difficult source to characterise due to its predominantly diffuse nature. Particulate phosphorus in surface water and dissolved phosphorus in groundwater are of particular concern in Irish water bodies. Hence the further development of models and indices to assess diffuse sources of contaminants are required for use by the Irish Environmental Protection Agency (EPA) to provide support for river basin planning. Understanding connectivity in the landscape is a vital component of characterising the source-pathway-receptor relationships for water-borne contaminants, and hence is a priority in this research. The DIFFUSE Project will focus on connectivity modelling and incorporation of connectivity into sediment, nutrient and pesticide risk mapping. The Irish approach to understanding and managing natural water bodies has developed substantially in recent years assisted by outputs from multiple research projects, including modelling and analysis tools developed during the Pathways and CatchmentTools projects. These include the Pollution Impact Potential (PIP) maps, which are an example of research output that is used by the EPA to support catchment management. The PIP maps integrate an understanding of the pollution pressures and mobilisation pathways and, using the source-pathways-receptor model, provide a scientific basis for evaluation of mitigation measures. These maps indicate the potential risk posed by nitrate and phosphate from diffuse agricultural sources to surface and groundwater receptors and delineate critical source areas (CSAs) as a means of facilitating the targeting of mitigation measures. Building on this previous research, the DIFFUSE Project will develop revised and new catchment managements tools focused on connectivity, sediment, phosphorus and pesticides. The DIFFUSE project will strive to identify the state
Branched polymers on branched polymers
Durhuus, Bergfinnur; Jonsson, Thordur
1996-01-01
We study an ensemble of branched polymers which are embedded on other branched polymers. This is a toy model which allows us to study explicitly the reaction of a statistical system on an underlying geometrical structure, a problem of interest in the study of the interaction of matter and quantized gravity. We find a phase transition at which the embedded polymers begin to cover the basis polymers. At the phase transition point the susceptibility exponent $\\gamma$ takes the value 3/4 and the ...
Implications of a large Bs→μ+μ- branching fraction for the minimal supersymmetric standard model
Hooper, Dan; Kelso, Chris
2012-05-01
Recently, the CDF Collaboration reported the first nonzero measurement of the Bs→μ+μ- branching fraction. The LHCb, CMS and ATLAS, collaborations have reported upper limits that are in tension with the CDF result. We consider the implications of these measurements for the specific case of the minimal supersymmetric standard model. We also discuss the implications of these measurements for neutralino dark matter and the supersymmetric contribution to the anomalous magnetic moment of the muon.
When mechanism matters: Bayesian forecasting using models of ecological diffusion.
Hefley, Trevor J; Hooten, Mevin B; Russell, Robin E; Walsh, Daniel P; Powell, James A
2017-05-01
Ecological diffusion is a theory that can be used to understand and forecast spatio-temporal processes such as dispersal, invasion, and the spread of disease. Hierarchical Bayesian modelling provides a framework to make statistical inference and probabilistic forecasts, using mechanistic ecological models. To illustrate, we show how hierarchical Bayesian models of ecological diffusion can be implemented for large data sets that are distributed densely across space and time. The hierarchical Bayesian approach is used to understand and forecast the growth and geographic spread in the prevalence of chronic wasting disease in white-tailed deer (Odocoileus virginianus). We compare statistical inference and forecasts from our hierarchical Bayesian model to phenomenological regression-based methods that are commonly used to analyse spatial occurrence data. The mechanistic statistical model based on ecological diffusion led to important ecological insights, obviated a commonly ignored type of collinearity, and was the most accurate method for forecasting. © 2017 John Wiley & Sons Ltd/CNRS.
When mechanism matters: Bayesian forecasting using models of ecological diffusion
Hefley, Trevor J.; Hooten, Mevin B.; Russell, Robin E.; Walsh, Daniel P.; Powell, James A.
2017-01-01
Ecological diffusion is a theory that can be used to understand and forecast spatio-temporal processes such as dispersal, invasion, and the spread of disease. Hierarchical Bayesian modelling provides a framework to make statistical inference and probabilistic forecasts, using mechanistic ecological models. To illustrate, we show how hierarchical Bayesian models of ecological diffusion can be implemented for large data sets that are distributed densely across space and time. The hierarchical Bayesian approach is used to understand and forecast the growth and geographic spread in the prevalence of chronic wasting disease in white-tailed deer (Odocoileus virginianus). We compare statistical inference and forecasts from our hierarchical Bayesian model to phenomenological regression-based methods that are commonly used to analyse spatial occurrence data. The mechanistic statistical model based on ecological diffusion led to important ecological insights, obviated a commonly ignored type of collinearity, and was the most accurate method for forecasting.
Energy Technology Data Exchange (ETDEWEB)
Capdebosq, Y
1999-09-01
In order to study and simulate nuclear reactor cores, one needs to access the neutron distribution in the core. In practice, the description of this density of neutrons is given by a system of diffusion equations, coupled by non differential exchange terms. The strong heterogeneity of the medium constitutes a major obstacle to the numerical computation of this models at reasonable cost. Homogenization appears as compulsory. Heuristic methods have been developed since the origin by nuclear physicists, under a periodicity assumption on the coefficients. They consist in doing a fine computation one a single periodicity cell, to solve the system on the whole domain with homogeneous coefficients, and to reconstruct the neutron density by multiplying the solutions of the two computations. The objectives of this work are to provide mathematically rigorous basis to this factorization method, to obtain the exact formulas of the homogenized coefficients, and to start on geometries where two periodical medium are placed side by side. The first result of this thesis concerns eigenvalue problem models which are used to characterize the state of criticality of the reactor, under a symmetry assumption on the coefficients. The convergence of the homogenization process is proved, and formulas of the homogenized coefficients are given. We then show that without symmetry assumptions, a drift phenomenon appears. It is characterized by the mean of a real Bloch wave method, which gives the homogenized limit in the general case. These results for the critical problem are then adapted to the evolution model. Finally, the homogenization of the critical problem in the case of two side by side periodic medium is studied on a one dimensional on equation model. (authors)
Mesoscale modelling of crack-induced diffusivity in concrete
Nilenius, Filip; Larsson, Fredrik; Lundgren, Karin; Runesson, Kenneth
2015-02-01
Cracks have large impact on the diffusivity of concrete since they provide low-resistance pathways for moisture and chloride ions to migrate through the material. In this work, crack-induced diffusivity in concrete is modelled on the heterogeneous mesoscale and computationally homogenized to obtain macroscale diffusivity properties. Computations are carried out using the finite element method on three-dimensional statistical volume elements (SVEs) comprising the mesoscale constituents in terms of cement paste, aggregates and the interfacial transition zone (ITZ). The SVEs are subjected to uni-axial tension loading and cracks are simulated by use of an isotropic damage model. In a damaged finite element, the crack plane is assumed to be perpendicular to the largest principle strain, and diffusivity properties are assigned to the element only in the in-plane direction of the crack by anisotropic constitutive modelling. The numerical results show that the macroscale diffusivity of concrete can be correlated to the applied mechanical straining of the SVE and that the macroscale diffusivity increases mainly in the transversal direction relative to the axis of imposed mechanical straining.
Study of the 125 GeV Standard Model Higgs Boson Partial Widths and Branching Fractions
Almeida, Leandro G; Pokorski, Stefan; Wells, James D
2014-01-01
The discovery of the Higgs boson, with mass known to better than the percent level, enables for the first time precision Higgs boson analyses. Toward this goal, we define an expansion formalism of the Higgs boson partial widths and branching fractions that facilitates such studies. This expansion yields the observables as a perturbative expansion around reference values of Standard Model input observables (quark masses, QCD coupling constant, etc.). We compute the coefficients of the expansion using state-of-the-art results. We also study the various sources of uncertainties in computing the partial widths and branching fractions more precisely. We discuss the impact of these results with efforts to discern new physics through precision Higgs boson studies.
A cascade computer model for mocrobicide diffusivity from mucoadhesive formulations
Lee, Yugyung; Khemka, Alok; Acharya, Gayathri; Giri, Namita; Lee, Chi H.
2015-01-01
Background The cascade computer model (CCM) was designed as a machine-learning feature platform for prediction of drug diffusivity from the mucoadhesive formulations. Three basic models (the statistical regression model, the K nearest neighbor model and the modified version of the back propagation neural network) in CCM operate sequentially in close collaboration with each other, employing the estimated value obtained from the afore-positioned base model as an input value to the next-position...
RETADD: a Regional Trajectory And Diffusion-Deposition model
Energy Technology Data Exchange (ETDEWEB)
Begovich, C. L.; Murphy, B. D.; Nappo, Jr., C. J.
1978-06-01
The Regional Trajectory and Diffusion-Deposition Model (RETADD) is based upon a version of the National Oceanic and Atmospheric Administration Air Resources Laboratory's Regional-Continental Scale Transport, Diffusion, and Deposition Model. The FORTRAN IV computer model uses a trajectory analysis technique for estimating the transport and long-range diffusion of material emitted from a point source. The wind trajectory portion of the code uses observed upper air winds to compute the transport of the material. Ground level concentrations and depositions are computed by using the Gaussian plume equation for wind trajectories projected forward in time. Options are included to specify an upper bound for the mixed layer and a chemical decomposition rate for the effluent. The limitations to the technique are discussed, the equations and model are described, and listings of the program, input, and output are included.
Self-similar Gaussian processes for modeling anomalous diffusion
Lim, S. C.; Muniandy, S. V.
2002-08-01
We study some Gaussian models for anomalous diffusion, which include the time-rescaled Brownian motion, two types of fractional Brownian motion, and models associated with fractional Brownian motion based on the generalized Langevin equation. Gaussian processes associated with these models satisfy the anomalous diffusion relation which requires the mean-square displacement to vary with tα, 0Brownian motion and time-rescaled Brownian motion all have the same probability distribution function, the Slepian theorem can be used to compare their first passage time distributions, which are different. Finally, in order to model anomalous diffusion with a variable exponent α(t) it is necessary to consider the multifractional extensions of these Gaussian processes.
Modeling the erythemal surface diffuse irradiance fraction for Badajoz, Spain
Directory of Open Access Journals (Sweden)
G. Sanchez
2017-10-01
Full Text Available Despite its important role on the human health and numerous biological processes, the diffuse component of the erythemal ultraviolet irradiance (UVER is scarcely measured at standard radiometric stations and therefore needs to be estimated. This study proposes and compares 10 empirical models to estimate the UVER diffuse fraction. These models are inspired from mathematical expressions originally used to estimate total diffuse fraction, but, in this study, they are applied to the UVER case and tested against experimental measurements. In addition to adapting to the UVER range the various independent variables involved in these models, the total ozone column has been added in order to account for its strong impact on the attenuation of ultraviolet radiation. The proposed models are fitted to experimental measurements and validated against an independent subset. The best-performing model (RAU3 is based on a model proposed by Ruiz-Arias et al. (2010 and shows values of r2 equal to 0.91 and relative root-mean-square error (rRMSE equal to 6.1 %. The performance achieved by this entirely empirical model is better than those obtained by previous semi-empirical approaches and therefore needs no additional information from other physically based models. This study expands on previous research to the ultraviolet range and provides reliable empirical models to accurately estimate the UVER diffuse fraction.
Modeling the erythemal surface diffuse irradiance fraction for Badajoz, Spain
Sanchez, Guadalupe; Serrano, Antonio; Cancillo, María Luisa
2017-10-01
Despite its important role on the human health and numerous biological processes, the diffuse component of the erythemal ultraviolet irradiance (UVER) is scarcely measured at standard radiometric stations and therefore needs to be estimated. This study proposes and compares 10 empirical models to estimate the UVER diffuse fraction. These models are inspired from mathematical expressions originally used to estimate total diffuse fraction, but, in this study, they are applied to the UVER case and tested against experimental measurements. In addition to adapting to the UVER range the various independent variables involved in these models, the total ozone column has been added in order to account for its strong impact on the attenuation of ultraviolet radiation. The proposed models are fitted to experimental measurements and validated against an independent subset. The best-performing model (RAU3) is based on a model proposed by Ruiz-Arias et al. (2010) and shows values of r2 equal to 0.91 and relative root-mean-square error (rRMSE) equal to 6.1 %. The performance achieved by this entirely empirical model is better than those obtained by previous semi-empirical approaches and therefore needs no additional information from other physically based models. This study expands on previous research to the ultraviolet range and provides reliable empirical models to accurately estimate the UVER diffuse fraction.
Modelling and simulation of diffusive processes methods and applications
Basu, SK
2014-01-01
This book addresses the key issues in the modeling and simulation of diffusive processes from a wide spectrum of different applications across a broad range of disciplines. Features: discusses diffusion and molecular transport in living cells and suspended sediment in open channels; examines the modeling of peristaltic transport of nanofluids, and isotachophoretic separation of ionic samples in microfluidics; reviews thermal characterization of non-homogeneous media and scale-dependent porous dispersion resulting from velocity fluctuations; describes the modeling of nitrogen fate and transport
Directory of Open Access Journals (Sweden)
Chengfei Geng
2017-10-01
Full Text Available In order to increase the power rating of electric vehicles, insulated gate bipolar translator (IGBT modules with multiple power terminals are usually adopted. The transient current sharing of the same polarity power terminals is related to the stray inductance in the branches of the bus-bar. Based on the laminated bus-bar of a three-phase inverter in the electric vehicles that consists of asymmetrical parallel branches, this paper investigates the transient current imbalance sharing caused by the asymmetrical stray inductance in the parallel branches of the bus-bar from the view of energy storing and releasing of stray inductance for the first time. Besides, the partial self-inductance and mutual-inductance model of the parallel branches is set up. Finally, a high-precision partial stray inductance measurement method is proposed, and the accuracy of the partial stray inductance model for asymmetrical parallel branches is verified by experimental tests.
Langevin equation with fluctuating diffusivity: A two-state model.
Miyaguchi, Tomoshige; Akimoto, Takuma; Yamamoto, Eiji
2016-07-01
Recently, anomalous subdiffusion, aging, and scatter of the diffusion coefficient have been reported in many single-particle-tracking experiments, though the origins of these behaviors are still elusive. Here, as a model to describe such phenomena, we investigate a Langevin equation with diffusivity fluctuating between a fast and a slow state. Namely, the diffusivity follows a dichotomous stochastic process. We assume that the sojourn time distributions of these two states are given by power laws. It is shown that, for a nonequilibrium ensemble, the ensemble-averaged mean-square displacement (MSD) shows transient subdiffusion. In contrast, the time-averaged MSD shows normal diffusion, but an effective diffusion coefficient transiently shows aging behavior. The propagator is non-Gaussian for short time and converges to a Gaussian distribution in a long-time limit; this convergence to Gaussian is extremely slow for some parameter values. For equilibrium ensembles, both ensemble-averaged and time-averaged MSDs show only normal diffusion and thus we cannot detect any traces of the fluctuating diffusivity with these MSDs. Therefore, as an alternative approach to characterizing the fluctuating diffusivity, the relative standard deviation (RSD) of the time-averaged MSD is utilized and it is shown that the RSD exhibits slow relaxation as a signature of the long-time correlation in the fluctuating diffusivity. Furthermore, it is shown that the RSD is related to a non-Gaussian parameter of the propagator. To obtain these theoretical results, we develop a two-state renewal theory as an analytical tool.
Langevin equation with fluctuating diffusivity: A two-state model
Miyaguchi, Tomoshige; Akimoto, Takuma; Yamamoto, Eiji
2016-07-01
Recently, anomalous subdiffusion, aging, and scatter of the diffusion coefficient have been reported in many single-particle-tracking experiments, though the origins of these behaviors are still elusive. Here, as a model to describe such phenomena, we investigate a Langevin equation with diffusivity fluctuating between a fast and a slow state. Namely, the diffusivity follows a dichotomous stochastic process. We assume that the sojourn time distributions of these two states are given by power laws. It is shown that, for a nonequilibrium ensemble, the ensemble-averaged mean-square displacement (MSD) shows transient subdiffusion. In contrast, the time-averaged MSD shows normal diffusion, but an effective diffusion coefficient transiently shows aging behavior. The propagator is non-Gaussian for short time and converges to a Gaussian distribution in a long-time limit; this convergence to Gaussian is extremely slow for some parameter values. For equilibrium ensembles, both ensemble-averaged and time-averaged MSDs show only normal diffusion and thus we cannot detect any traces of the fluctuating diffusivity with these MSDs. Therefore, as an alternative approach to characterizing the fluctuating diffusivity, the relative standard deviation (RSD) of the time-averaged MSD is utilized and it is shown that the RSD exhibits slow relaxation as a signature of the long-time correlation in the fluctuating diffusivity. Furthermore, it is shown that the RSD is related to a non-Gaussian parameter of the propagator. To obtain these theoretical results, we develop a two-state renewal theory as an analytical tool.
Mathematical models for drug diffusion through the compartments of ...
African Journals Online (AJOL)
This paper is an attempt to establish the mathematical models to understand the distribution of drug administration in human body through oral and intravenous routes. Three models were formulated based on diffusion process using Fick's principle and law of mass action. The rate constants governing the law of mass action ...
A combinatorial model of malware diffusion via bluetooth connections.
Directory of Open Access Journals (Sweden)
Stefano Merler
Full Text Available We outline here the mathematical expression of a diffusion model for cellphones malware transmitted through Bluetooth channels. In particular, we provide the deterministic formula underlying the proposed infection model, in its equivalent recursive (simple but computationally heavy and closed form (more complex but efficiently computable expression.
A combinatorial model of malware diffusion via bluetooth connections.
Merler, Stefano; Jurman, Giuseppe
2013-01-01
We outline here the mathematical expression of a diffusion model for cellphones malware transmitted through Bluetooth channels. In particular, we provide the deterministic formula underlying the proposed infection model, in its equivalent recursive (simple but computationally heavy) and closed form (more complex but efficiently computable) expression.
A branch-heterogeneous model of protein evolution for efficient inference of ancestral sequences.
Groussin, M; Boussau, B; Gouy, M
2013-07-01
Most models of nucleotide or amino acid substitution used in phylogenetic studies assume that the evolutionary process has been homogeneous across lineages and that composition of nucleotides or amino acids has remained the same throughout the tree. These oversimplified assumptions are refuted by the observation that compositional variability characterizes extant biological sequences. Branch-heterogeneous models of protein evolution that account for compositional variability have been developed, but are not yet in common use because of the large number of parameters required, leading to high computational costs and potential overparameterization. Here, we present a new branch-nonhomogeneous and nonstationary model of protein evolution that captures more accurately the high complexity of sequence evolution. This model, henceforth called Correspondence and likelihood analysis (COaLA), makes use of a correspondence analysis to reduce the number of parameters to be optimized through maximum likelihood, focusing on most of the compositional variation observed in the data. The model was thoroughly tested on both simulated and biological data sets to show its high performance in terms of data fitting and CPU time. COaLA efficiently estimates ancestral amino acid frequencies and sequences, making it relevant for studies aiming at reconstructing and resurrecting ancestral amino acid sequences. Finally, we applied COaLA on a concatenate of universal amino acid sequences to confirm previous results obtained with a nonhomogeneous Bayesian model regarding the early pattern of adaptation to optimal growth temperature, supporting the mesophilic nature of the Last Universal Common Ancestor.
A coupled model for intragranular deformation and chemical diffusion
Zhong, Xin; Vrijmoed, Johannes; Moulas, Evangelos; Tajčmanová, Lucie
2017-09-01
A coupled model for chemical diffusion and mechanical deformation is developed in analogy to the studies of poroelasticity and thermoelasticity. Nondimensionalization of the governing equations yields a controlling dimensionless parameter, the Deborah number, given by the ratio of the characteristic time for pressure relaxation and concentration homogenization. Using the Deborah number two types of plausible chemical zonation are distinguished, i.e. diffusion controlled, and mechanically controlled. The transition between these two types of chemical zonation is determined at the conditions where the Deborah number equals one. We apply our model to a chemically zoned plagioclase rim in a spherical coordinate frame assuming homogeneous initial pressure. Using thermodynamic data, an experimentally derived diffusion coefficient and a viscous flow law for plagioclase, our numerical simulations show that up to ∼0.6 GPa grain-scale pressure variation is generated during the diffusion-deformation process. Due to the mechanical-chemical coupling, the pressure variations maintain the chemical zonation longer than predicted by the classical diffusion model. The fully coupled mechanical-chemical model provides an alternative explanation for the preservation of chemically zoned minerals, and may contribute to a better understanding of metamorphic processes in the deep Earth interior.
Mathematical models of a diffusion-convection in porous media
Directory of Open Access Journals (Sweden)
Anvarbek M. Meirmanov
2012-06-01
Full Text Available Mathematical models of a diffusion-convection in porous media are derived from the homogenization theory. We start with the mathematical model on the microscopic level, which consist of the Stokes system for a weakly compressible viscous liquid occupying a pore space, coupled with a diffusion-convection equation for the admixture. We suppose that the viscosity of the liquid depends on a concentration of the admixture and for this nonlinear system we prove the global in time existence of a weak solution. Next we rigorously fulfil the homogenization procedure as the dimensionless size of pores tends to zero, while the porous body is geometrically periodic. As a result, we derive new mathematical models of a diffusion-convection in absolutely rigid porous media.
Numerical modelling of swirling diffusive flames
Directory of Open Access Journals (Sweden)
Parra-Santos Teresa
2016-01-01
Full Text Available Computational Fluid Dynamics has been used to study the mixing and combustion of two confined jets whose setup and operating conditions are those of the benchmark of Roback and Johnson. Numerical model solves 3D transient Navier Stokes for turbulent and reactive flows. Averaged velocity profiles using RNG swirl dominated k-epsilon model have been validated with experimental measurements from other sources for the non reactive case. The combustion model is Probability Density Function. Bearing in mind the annular jet has swirl number over 0.5, a vortex breakdown appears in the axis of the burner. Besides, the sudden expansion with a ratio of 2 in diameter between nozzle exits and the test chamber produces the boundary layer separation with the corresponding torus shape recirculation. Contrasting the mixing and combustion models, the last one produces the reduction of the vortex breakdown.
Modelling on cavitation in a diffuser with vortex generator
Directory of Open Access Journals (Sweden)
Jablonská J.
2013-04-01
Full Text Available Based on cavitation modelling in Laval nozzle results and experience, problem with the diffuser with vortex generator was defined. The problem describes unsteady multiphase flow of water. Different cavitation models were used when modelling in Fluent, flow condition is inlet and pressure condition is outlet. Boundary conditions were specified by Energy Institute, Victor Kaplan’s Department of Fluid Engineering, Faculty of Mechanical Engineering, Brno University of Technology. Numerical modelling is compared with experiment.
Modeling Dynamics of Diffusion Across Heterogeneous Social Networks: News Diffusion in Social Media
Directory of Open Access Journals (Sweden)
Peter Christen
2013-10-01
Full Text Available Diverse online social networks are becoming increasingly interconnected by sharing information. Accordingly, emergent macro-level phenomena have been observed, such as the synchronous spread of information across different types of social media. Attempting to analyze the emergent global behavior is impossible from the examination of a single social platform, and dynamic influences between different social networks are not negligible. Furthermore, the underlying structural property of networks is important, as it drives the diffusion process in a stochastic way. In this paper, we propose a macro-level diffusion model with a probabilistic approach by combining both the heterogeneity and structural connectivity of social networks. As real-world phenomena, we explore instances of news diffusion across different social media platforms from a dataset that contains over 386 million web documents covering a one-month period in early 2011. We find that influence between different media types is varied by the context of information. News media are the most influential in the arts and economy categories, while social networking sites (SNS and blog media are in the politics and culture categories, respectively. Furthermore, controversial topics, such as political protests and multiculturalism failure, tend to spread concurrently across social media, while entertainment topics, such as film releases and celebrities, are more likely driven by interactions within single social platforms. We expect that the proposed model applies to a wider class of diffusion phenomena in diverse fields and that it provides a way of interpreting the dynamics of diffusion in terms of the strength and directionality of influences among populations.
A multi-branch finite deformation constitutive model for a shape memory polymer based syntactic foam
Gu, Jianping; Sun, Huiyu; Fang, Changqing
2015-02-01
A multi-branch thermoviscoelastic-themoviscoplastic finite deformation constitutive model incorporated with structural and stress relaxation is developed for a thermally activated shape memory polymer (SMP) based syntactic foam. In this paper, the total mechanical deformation of the foam is divided into the components of the SMP and the elastic glass microballoons by using the mixture rule. The nonlinear Adam-Gibbs model is used to describe the structural relaxation of the SMP as the temperature crosses the glass transition temperature (Tg). Further, a multi-branch model combined with the modified Eying model of viscous flow is used to capture the multitude of relaxation processes of the SMP. The deformation of the glass microballoons could be split into elastic and inelastic components. In addition, the phenomenological evolution rule is implemented in order to further characterize the macroscopic post-yield strain softening behaviors of the syntactic foam. A comparison between the numerical simulation and the thermomechanical experiment shows an acceptable agreement. Moreover, a parametric study is conducted to examine the predictability of the model and to provide guidance for reasonable design of the syntactic foam.
Ray, Shayoni; Yuan, Daniel; Dhulekar, Nimit; Oztan, Basak; Yener, Bülent; Larsen, Melinda
2013-01-01
Cleft formation during submandibular salivary gland branching morphogenesis is the critical step initiating the growth and development of the complex adult organ. Previous experimental studies indicated requirements for several epithelial cellular processes, such as proliferation, migration, cell-cell adhesion, cell-extracellular matrix (matrix) adhesion, and cellular contraction in cleft formation; however, the relative contribution of each of these processes is not fully understood since it is not possible to experimentally manipulate each factor independently. We present here a comprehensive analysis of several cellular parameters regulating cleft progression during branching morphogenesis in the epithelial tissue of an early embryonic salivary gland at a local scale using an on lattice Monte-Carlo simulation model, the Glazier-Graner-Hogeweg model. We utilized measurements from time-lapse images of mouse submandibular gland organ explants to construct a temporally and spatially relevant cell-based 2D model. Our model simulates the effect of cellular proliferation, actomyosin contractility, cell-cell and cell-matrix adhesions on cleft progression, and it was used to test specific hypotheses regarding the function of these parameters in branching morphogenesis. We use innovative features capturing several aspects of cleft morphology and quantitatively analyze clefts formed during functional modification of the cellular parameters. Our simulations predict that a low epithelial mitosis rate and moderate level of actomyosin contractility in the cleft cells promote cleft progression. Raising or lowering levels of contractility and mitosis rate resulted in non-progressive clefts. We also show that lowered cell-cell adhesion in the cleft region and increased cleft cell-matrix adhesions are required for cleft progression. Using a classifier-based analysis, the relative importance of these four contributing cellular factors for effective cleft progression was determined
Small-signal modeling of MOSFET cascode with merged diffusion
Yun, Yeonam; Jhon, Hee-Sauk; Jeon, Jongwook; Lee, Jaehong; Shin, Hyungcheol
2009-05-01
For the first time, the small-signal model of MOSFET cascode with merged diffusion is presented. It is the cascade of the two quasi-static MOSFET small-signal equivalent circuits. Drain of one transistor and source of another transistor is shared with merged diffusion. By Y-parameter analysis, capacitances, resistances and transconductances comprising the small-signal equivalent circuit were extracted analytically using four port S parameter measurement. This modeling method was verified with the measured Y parameter data up to 15 GHz.
Energy Technology Data Exchange (ETDEWEB)
Belucz, Bernadett; Forgács-Dajka, Emese [Eötvös University, Department of Astronomy, 1518 Budapest, Pf. 32 (Hungary); Dikpati, Mausumi, E-mail: bbelucz@astro.elte.hu, E-mail: dikpati@ucar.edu [High Altitude Observatory, National Center for Atmospheric Research, 3080 Center Green, Boulder, CO 80307-3000 (United States)
2015-06-20
Babcock–Leighton type-solar dynamo models with single-celled meridional circulation are successful in reproducing many solar cycle features. Recent observations and theoretical models of meridional circulation do not indicate a single-celled flow pattern. We examine the role of complex multi-cellular circulation patterns in a Babcock–Leighton solar dynamo in advection- and diffusion-dominated regimes. We show from simulations that the presence of a weak, second, high-latitude reverse cell speeds up the cycle and slightly enhances the poleward branch in the butterfly diagram, whereas the presence of a second cell in depth reverses the tilt of the butterfly wing to an antisolar type. A butterfly diagram constructed from the middle of convection zone yields a solar-like pattern, but this may be difficult to realize in the Sun because of magnetic buoyancy effects. Each of the above cases behaves similarly in higher and lower magnetic diffusivity regimes. However, our dynamo with a meridional circulation containing four cells in latitude behaves distinctly differently in the two regimes, producing solar-like butterfly diagrams with fast cycles in the higher diffusivity regime, and complex branches in butterfly diagrams in the lower diffusivity regime. We also find that dynamo solutions for a four-celled pattern, two in radius and two in latitude, prefer to quickly relax to quadrupolar parity if the bottom flow speed is strong enough, of similar order of magnitude as the surface flow speed.
Modeling Diffusion of Many Innovations via Multilevel Diffusion Curves: Payola in Pop Music Radio
Rossman, Gabriel; Chiu, Ming Ming; Mol, Joeri
2006-01-01
We introduce a new statistical method – multilevel diffusion curves – to model how multiple innovations spread through an industry. Specifically, we analyze when radio stations begin broadcasting 534 pop singles. Ordinarily radio stations imitate one another, an endogenous process producing a characteristic “s-curve.” However, payola can dwarf this process and produce a characteristic negative exponential curve, controlling for the song artist's number of successful songs in the past year. Th...
Bento, Ricardo Ferreira; Salomone, Raquel; Nascimento, Silvia Bona do; Ferreira, Ricardo Jose Rodriguez; Silva, Ciro Ferreira da; Costa, Heloisa Juliana Zabeu Rossi
2014-07-01
Introduction The ideal animal model for nerve regeneration studies is the object of controversy, because all models described by the literature have advantages and disadvantages. Objective To describe the histologic and functional patterns of the mandibular branch of the facial nerve of Wistar rats to create a new experimental model of facial nerve regeneration. Methods Forty-two male rats were submitted to a nerve conduction test of the mandibular branch to obtain the compound muscle action potential. Twelve of these rats had the mandibular branch surgically removed and submitted to histologic analysis (number, partial density, and axonal diameter) of the proximal and distal segments. Results There was no statistically significant difference in the functional and histologic variables studied. Conclusion These new histologic and functional standards of the mandibular branch of the facial nerve of rats establish an objective, easy, and greatly reproducible model for future facial nerve regeneration studies.
Directory of Open Access Journals (Sweden)
Bento, Ricardo Ferreira
2014-06-01
Full Text Available Introduction The ideal animal model for nerve regeneration studies is the object of controversy, because all models described by the literature have advantages and disadvantages. Objective To describe the histologic and functional patterns of the mandibular branch of the facial nerve of Wistar rats to create a new experimental model of facial nerve regeneration. Methods Forty-two male rats were submitted to a nerve conduction test of the mandibular branch to obtain the compound muscle action potential. Twelve of these rats had the mandibular branch surgically removed and submitted to histologic analysis (number, partial density, and axonal diameter of the proximal and distal segments. Results There was no statistically significant difference in the functional and histologic variables studied. Conclusion These new histologic and functional standards of the mandibular branch of the facial nerve of rats establish an objective, easy, and greatly reproducible model for future facial nerve regeneration studies.
Habitability of super-Earth planets around other suns: models including Red Giant Branch evolution.
von Bloh, W; Cuntz, M; Schröder, K-P; Bounama, C; Franck, S
2009-01-01
The unexpected diversity of exoplanets includes a growing number of super-Earth planets, i.e., exoplanets with masses of up to several Earth masses and a similar chemical and mineralogical composition as Earth. We present a thermal evolution model for a 10 Earth-mass planet orbiting a star like the Sun. Our model is based on the integrated system approach, which describes the photosynthetic biomass production and takes into account a variety of climatological, biogeochemical, and geodynamical processes. This allows us to identify a so-called photosynthesis-sustaining habitable zone (pHZ), as determined by the limits of biological productivity on the planetary surface. Our model considers solar evolution during the main-sequence stage and along the Red Giant Branch as described by the most recent solar model. We obtain a large set of solutions consistent with the principal possibility of life. The highest likelihood of habitability is found for "water worlds." Only mass-rich water worlds are able to realize pHZ-type habitability beyond the stellar main sequence on the Red Giant Branch.
Diffusion in energy materials: Governing dynamics from atomistic modelling
Parfitt, D.; Kordatos, A.; Filippatos, P. P.; Chroneos, A.
2017-09-01
Understanding diffusion in energy materials is critical to optimising the performance of solid oxide fuel cells (SOFCs) and batteries both of which are of great technological interest as they offer high efficiency for cleaner energy conversion and storage. In the present review, we highlight the insights offered by atomistic modelling of the ionic diffusion mechanisms in SOFCs and batteries and how the growing predictive capability of high-throughput modelling, together with our new ability to control compositions and microstructures, will produce advanced materials that are designed rather than chosen for a given application. The first part of the review focuses on the oxygen diffusion mechanisms in cathode and electrolyte materials for SOFCs and in particular, doped ceria and perovskite-related phases with anisotropic structures. The second part focuses on disordered oxides and two-dimensional materials as these are very promising systems for battery applications.
Estimation and prediction under local volatility jump-diffusion model
Kim, Namhyoung; Lee, Younhee
2018-02-01
Volatility is an important factor in operating a company and managing risk. In the portfolio optimization and risk hedging using the option, the value of the option is evaluated using the volatility model. Various attempts have been made to predict option value. Recent studies have shown that stochastic volatility models and jump-diffusion models reflect stock price movements accurately. However, these models have practical limitations. Combining them with the local volatility model, which is widely used among practitioners, may lead to better performance. In this study, we propose a more effective and efficient method of estimating option prices by combining the local volatility model with the jump-diffusion model and apply it using both artificial and actual market data to evaluate its performance. The calibration process for estimating the jump parameters and local volatility surfaces is divided into three stages. We apply the local volatility model, stochastic volatility model, and local volatility jump-diffusion model estimated by the proposed method to KOSPI 200 index option pricing. The proposed method displays good estimation and prediction performance.
The development and verification of the Perez diffuse radiation model
Energy Technology Data Exchange (ETDEWEB)
Perez, R.; Stewart, R.; Seals, R.; Guertin, T.
1988-10-01
The purpose of this work was to determine site specific coefficients (within the US) for use with the Perez diffuse irradiance model. The model predicts diffuse irradiance on tilted planes of any orientation for all insolation conditions, based on the knowledge of direct and global (or diffuse) irradiance. This is a component of SNLA's photovoltaic simulation program PVFORM. The model consists of (1) a pre-set geometric framework that describes the main non-isotropic features of sky radiance--circumsolar and horizon/zenith effects--and (2) an experimentally derived component that describes the variations of these anisotropic effects with weather conditions. A measurement program was initiated to provide the data necessary for (1) deriving the model's experimental component for several US locations, (2) comparing model configuration and evaluating performance at these locations and (3) evaluating site dependency and recommending, if justified, model configurations adapted to particular environments/climates. Five environmentally distinct sites were selected based on their potential impact on model performance. In addition, work was performed to improve sky condition parameterization and eliminate all unjustified complexities of the original model. The main results of this work are the following: (1) the model algorithm has been greatly simplified while conserving original accuracy, (2) the physical soundness and effectiveness of the insolation parameterization method have been improved, (3) one unique model, with a fixed set of coefficients, has been shown to be sufficiently accurate to describe sites within the US. 22 refs., 19 figs., 14 tabs.
Reaction-diffusion models of decontamination
DEFF Research Database (Denmark)
Hjorth, Poul G.
A contaminant, which also contains a polymer is in the form of droplets on a solid surface. It is to be removed by the action of a decontaminant, which is applied in aqueous solution. The contaminant is only sparingly soluble in water, so the reaction mechanism is that it slowly dissolves...... in the aqueous solution and then is oxidized by the decontaminant. The polymer is insoluble in water, and so builds up near the interface, where its presence can impede the transport of contaminant. In these circumstances, Dstl wish to have mathematical models that give an understanding of the process, and can...
Modeling E. coli tumbles by rotational diffusion. Implications for chemotaxis.
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Jonathan Saragosti
Full Text Available The bacterium Escherichia coli in suspension in a liquid medium swims by a succession of runs and tumbles, effectively describing a random walk. The tumbles randomize incompletely, i.e. with a directional persistence, the orientation taken by the bacterium. Here, we model these tumbles by an active rotational diffusion process characterized by a diffusion coefficient and a diffusion time. In homogeneous media, this description accounts well for the experimental reorientations. In shallow gradients of nutrients, tumbles are still described by a unique rotational diffusion coefficient. Together with an increase in the run length, these tumbles significantly contribute to the net chemotactic drift via a modulation of their duration as a function of the direction of the preceding run. Finally, we discuss the limits of this model in propagating concentration waves characterized by steep gradients. In that case, the effective rotational diffusion coefficient itself varies with the direction of the preceding run. We propose that this effect is related to the number of flagella involved in the reorientation process.
GIS-BASED 1-D DIFFUSIVE WAVE OVERLAND FLOW MODEL
Energy Technology Data Exchange (ETDEWEB)
KALYANAPU, ALFRED [Los Alamos National Laboratory; MCPHERSON, TIMOTHY N. [Los Alamos National Laboratory; BURIAN, STEVEN J. [NON LANL
2007-01-17
This paper presents a GIS-based 1-d distributed overland flow model and summarizes an application to simulate a flood event. The model estimates infiltration using the Green-Ampt approach and routes excess rainfall using the 1-d diffusive wave approximation. The model was designed to use readily available topographic, soils, and land use/land cover data and rainfall predictions from a meteorological model. An assessment of model performance was performed for a small catchment and a large watershed, both in urban environments. Simulated runoff hydrographs were compared to observations for a selected set of validation events. Results confirmed the model provides reasonable predictions in a short period of time.
Three dimensional simulated modelling of diffusion capacitance of ...
African Journals Online (AJOL)
A three dimensional (3-D) simulated modelling was developed to analyse the excess minority carrier density in the base of a polycrystalline bifacial silicon solar cell. The concept of junction recombination velocity was ado-pted to quantify carrier flow through the junction, and to examine the solar cell diffusion capacitance for ...
Regularization modeling for large-eddy simulation of diffusion flames
Geurts, Bernardus J.; Wesseling, P.; Oñate, E.; Périaux, J.
We analyze the evolution of a diffusion flame in a turbulent mixing layer using large-eddy simulation. The large-eddy simulation includes Leray regularization of the convective transport and approximate inverse filtering to represent the chemical source terms. The Leray model is compared to the more
Modeling the diffusion of phosphorus in silicon in 3-D
Energy Technology Data Exchange (ETDEWEB)
Baker, K.R. [Univ. of Texas, Austin, TX (United States)
1994-12-31
The use of matrix preconditioning in semiconductor process simulation is examined. The simplified nonlinear single-species model for the diffusion of phosphorus into silicon is considered. The experimental three-dimensional simulator, PEPPER3, which uses finite differences and the numerical method of lines to implement the reaction-diffusion equation is modified to allow NSPCG to be called to solve the linear system in the inner Newton loop. Use of NSPCG allowed various accelerators such as Generalized Minimal Residual (GMRES) and Conjugate Gradient (CG) to be used in conjunction with preconditioners such as Richardson, Jacobi, and Incomplete Cholesky.
Modeling Radiation Belt Electron Dynamics with the DREAM3D Diffusion Model
Energy Technology Data Exchange (ETDEWEB)
Tu, Weichao [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Cunningham, Gregory S. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Chen, Yue [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Henderson, Michael G. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Morley, Steven K. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Reeves, Geoffrey D. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Blake, Bernard J. [The Aerospace Corporation, El Segundo, CA (United States); Baker, Daniel N. [Lab. for Atmospheric and Space Physics, Boulder, CO (United States); Spence, Harlan [Univ. of New Hampshire, Durham, NH (United States)
2014-02-14
The simulation results from our 3D diffusion model on the CRRES era suggest; our model captures the general variations of radiation belt electrons, including the dropouts and the enhancements; the overestimations inside the plasmapause can be improved by increasing the PA diffusion from hiss waves; and that better D_{LL} and wave models are required.
Priority diffusion model in lattices and complex networks.
Maragakis, Michalis; Carmi, Shai; ben-Avraham, Daniel; Havlin, Shlomo; Argyrakis, Panos
2008-02-01
We introduce a model for diffusion of two classes of particles (A and B ) with priority: where both species are present in the same site the motion of A's takes precedence over that of B's. This describes realistic situations in wireless and communication networks. In regular lattices the diffusion of the two species is normal, but the B particles are significantly slower due to the presence of the A particles. From the fraction of sites where the B particles can move freely, which we compute analytically, we derive the diffusion coefficients of the two species. In heterogeneous networks the fraction of sites where B's are free decreases exponentially with the degree of the sites. This, coupled with accumulation of particles in high-degree nodes, leads to trapping of the low priority particles in scale-free networks.
Yaghini, N.; Iedema, P.D.
2014-01-01
We present a comprehensive model to predict the molecular weight distribution (MWD),(1) and branching distribution of low-density polyethylene (IdPE),(2) for free radical polymerization system in a continuous stirred tank reactor (CSTR).(3) The model accounts for branching, by branching moment or
Bivariate Nonlinear Diffusion Degradation Process Modeling via Copula and MCMC
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Huibing Hao
2014-01-01
Full Text Available A novel reliability assessment method for degradation product with two dependent performance characteristics (PCs is proposed, which is different from existing work that only utilized one dimensional degradation data. In this model, the dependence of two PCs is described by the Frank copula function, and each PC is governed by a random effected nonlinear diffusion process where random effects capture the unit to unit differences. Considering that the model is so complicated and analytically intractable, Markov Chain Monte Carlo (MCMC method is used to estimate the unknown parameters. A numerical example about LED lamp is given to demonstrate the usefulness and validity of the proposed model and method. Numerical results show that the random effected nonlinear diffusion model is very useful by checking the goodness of fit of the real data, and ignoring the dependence between PCs may result in different reliability conclusion.
On a Generalized Squared Gaussian Diffusion Model for Option Valuation
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Edeki S.O.
2017-01-01
Full Text Available In financial mathematics, option pricing models are vital tools whose usefulness cannot be overemphasized. Modern approaches and modelling of financial derivatives are therefore required in option pricing and valuation settings. In this paper, we derive via the application of Ito lemma, a pricing model referred to as Generalized Squared Gaussian Diffusion Model (GSGDM for option pricing and valuation. Same approach can be considered via Stratonovich stochastic dynamics. We also show that the classical Black-Scholes, and the square root constant elasticity of variance models are special cases of the GSGDM. In addition, general solution of the GSGDM is obtained using modified variational iterative method (MVIM.
Macroscopic diffusion models for precipitation in crystalline gallium arsenide
Energy Technology Data Exchange (ETDEWEB)
Kimmerle, Sven-Joachim Wolfgang
2009-09-21
Based on a thermodynamically consistent model for precipitation in gallium arsenide crystals including surface tension and bulk stresses by Dreyer and Duderstadt, we propose two different mathematical models to describe the size evolution of liquid droplets in a crystalline solid. The first model treats the diffusion-controlled regime of interface motion, while the second model is concerned with the interface-controlled regime of interface motion. Our models take care of conservation of mass and substance. These models generalise the well-known Mullins- Sekerka model for Ostwald ripening. We concentrate on arsenic-rich liquid spherical droplets in a gallium arsenide crystal. Droplets can shrink or grow with time but the centres of droplets remain fixed. The liquid is assumed to be homogeneous in space. Due to different scales for typical distances between droplets and typical radii of liquid droplets we can derive formally so-called mean field models. For a model in the diffusion-controlled regime we prove this limit by homogenisation techniques under plausible assumptions. These mean field models generalise the Lifshitz-Slyozov-Wagner model, which can be derived from the Mullins-Sekerka model rigorously, and is well understood. Mean field models capture the main properties of our system and are well adapted for numerics and further analysis. We determine possible equilibria and discuss their stability. Numerical evidence suggests in which case which one of the two regimes might be appropriate to the experimental situation. (orig.)
Robust and fast nonlinear optimization of diffusion MRI microstructure models.
Harms, R L; Fritz, F J; Tobisch, A; Goebel, R; Roebroeck, A
2017-07-15
Advances in biophysical multi-compartment modeling for diffusion MRI (dMRI) have gained popularity because of greater specificity than DTI in relating the dMRI signal to underlying cellular microstructure. A large range of these diffusion microstructure models have been developed and each of the popular models comes with its own, often different, optimization algorithm, noise model and initialization strategy to estimate its parameter maps. Since data fit, accuracy and precision is hard to verify, this creates additional challenges to comparability and generalization of results from diffusion microstructure models. In addition, non-linear optimization is computationally expensive leading to very long run times, which can be prohibitive in large group or population studies. In this technical note we investigate the performance of several optimization algorithms and initialization strategies over a few of the most popular diffusion microstructure models, including NODDI and CHARMED. We evaluate whether a single well performing optimization approach exists that could be applied to many models and would equate both run time and fit aspects. All models, algorithms and strategies were implemented on the Graphics Processing Unit (GPU) to remove run time constraints, with which we achieve whole brain dataset fits in seconds to minutes. We then evaluated fit, accuracy, precision and run time for different models of differing complexity against three common optimization algorithms and three parameter initialization strategies. Variability of the achieved quality of fit in actual data was evaluated on ten subjects of each of two population studies with a different acquisition protocol. We find that optimization algorithms and multi-step optimization approaches have a considerable influence on performance and stability over subjects and over acquisition protocols. The gradient-free Powell conjugate-direction algorithm was found to outperform other common algorithms in terms of
Underwood, Thomas; Loebner, Keith; Cappelli, Mark
2015-11-01
Detailed measurements of the thermodynamic and electrodynamic plasma state variables within the plume of a pulsed plasma accelerator are presented. A quadruple Langmuir probe operating in current-saturation mode is used to obtain time resolved measurements of the plasma density, temperature, potential, and velocity along the central axis of the accelerator. This data is used in conjunction with a fast-framing, intensified CCD camera to develop and validate a model predicting the existence of two distinct types of ionization waves corresponding to the upper and lower solution branches of the Hugoniot curve. A deviation of less than 8% is observed between the quasi-steady, one-dimensional theoretical model and the experimentally measured plume velocity. This work is supported by the U.S. Department of Energy Stewardship Science Academic Program in addition to the National Defense Science Engineering Graduate Fellowship.
Diffusion in higher dimensional SYK model with complex fermions
Cai, Wenhe; Ge, Xian-Hui; Yang, Guo-Hong
2018-01-01
We construct a new higher dimensional SYK model with complex fermions on bipartite lattices. As an extension of the original zero-dimensional SYK model, we focus on the one-dimension case, and similar Hamiltonian can be obtained in higher dimensions. This model has a conserved U(1) fermion number Q and a conjugate chemical potential μ. We evaluate the thermal and charge diffusion constants via large q expansion at low temperature limit. The results show that the diffusivity depends on the ratio of free Majorana fermions to Majorana fermions with SYK interactions. The transport properties and the butterfly velocity are accordingly calculated at low temperature. The specific heat and the thermal conductivity are proportional to the temperature. The electrical resistivity also has a linear temperature dependence term.
Fractional Heat Conduction Models and Thermal Diffusivity Determination
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Monika Žecová
2015-01-01
Full Text Available The contribution deals with the fractional heat conduction models and their use for determining thermal diffusivity. A brief historical overview of the authors who have dealt with the heat conduction equation is described in the introduction of the paper. The one-dimensional heat conduction models with using integer- and fractional-order derivatives are listed. Analytical and numerical methods of solution of the heat conduction models with using integer- and fractional-order derivatives are described. Individual methods have been implemented in MATLAB and the examples of simulations are listed. The proposal and experimental verification of the methods for determining thermal diffusivity using half-order derivative of temperature by time are listed at the conclusion of the paper.
A Diffusion Model for Two-sided Service Systems
Homma, Koichi; Yano, Koujin; Funabashi, Motohisa
A diffusion model is proposed for two-sided service systems. ‘Two-sided’ refers to the existence of an economic network effect between two different and interrelated groups, e.g., card holders and merchants in an electronic money service. The service benefit for a member of one side depends on the number and quality of the members on the other side. A mathematical model by J. H. Rohlfs explains the network (or bandwagon) effect of communications services. In Rohlfs' model, only the users' group exists and the model is one-sided. This paper extends Rohlfs' model to a two-sided model. We propose, first, a micro model that explains individual behavior in regard to service subscription of both sides and a computational method that drives the proposed model. Second, we develop macro models with two diffusion-rate variables by simplifying the micro model. As a case study, we apply the models to an electronic money service and discuss the simulation results and actual statistics.
Characterization and modeling of thermal diffusion and aggregation in nanofluids.
Energy Technology Data Exchange (ETDEWEB)
Gharagozloo, Patricia E.; Goodson, Kenneth E. (Stanford University, Stanford, CA)
2010-05-01
Fluids with higher thermal conductivities are sought for fluidic cooling systems in applications including microprocessors and high-power lasers. By adding high thermal conductivity nanoscale metal and metal oxide particles to a fluid the thermal conductivity of the fluid is enhanced. While particle aggregates play a central role in recent models for the thermal conductivity of nanofluids, the effect of particle diffusion in a temperature field on the aggregation and transport has yet to be studied in depth. The present work separates the effects of particle aggregation and diffusion using parallel plate experiments, infrared microscopy, light scattering, Monte Carlo simulations, and rate equations for particle and heat transport in a well dispersed nanofluid. Experimental data show non-uniform temporal increases in thermal conductivity above effective medium theory and can be well described through simulation of the combination of particle aggregation and diffusion. The simulation shows large concentration distributions due to thermal diffusion causing variations in aggregation, thermal conductivity and viscosity. Static light scattering shows aggregates form more quickly at higher concentrations and temperatures, which explains the increased enhancement with temperature reported by other research groups. The permanent aggregates in the nanofluid are found to have a fractal dimension of 2.4 and the aggregate formations that grow over time are found to have a fractal dimension of 1.8, which is consistent with diffusion limited aggregation. Calculations show as aggregates grow the viscosity increases at a faster rate than thermal conductivity making the highly aggregated nanofluids unfavorable, especially at the low fractal dimension of 1.8. An optimum nanoparticle diameter for these particular fluid properties is calculated to be 130 nm to optimize the fluid stability by reducing settling, thermal diffusion and aggregation.
Inamoto, Tsutomu; Tamaki, Hisashi; Murao, Hajime; Kitamura, Shinzo
In this paper, we propose a framework for obtaining the optimal car service to elevator operation problems by applying branch-and-bound methods based on the deterministic optimization model. In building the model, we assume the followings: the numbers such as time and car positions are discritized, the movement of cars and passengers synchronized with discrete time, and all passengers arriving to the hall is known beforehand. In the model, the transportation of any passenger is considered as a combination of two jobs, i.e., an into-job and an out-of-job. The into-job corresponds to a passenger's getting into a car, while the out-of-job corresponds to getting out of a car. Here, the optimal car service of the problem is obtained by assigning each into-job to an appropriate car and determining the processing order of into- and out-of-jobs for each car under some constraints including the precedence conditions. In designing a BAB solution, the assignment of into-jobs to cars and the processing order of jobs on each car are taken as decision variables. It is expected that the optimal (or near-optimal) car service obtained by applying such techniques as branch-and-bound methods based on the model is helpful to estimate the effectiveness of the utilization of look-ahead information. It is also useful in valuating the performance of the existing rules for elevator operation. In the paper, by using the proposed method, the validity of an existing rule, i.e., the Call-Dispatching and Selective-Collective rule (CDSC), is examined. The results of computational experiments show that the performance of the CDSC rule is not always the optimal or near-optimal, while it reveals a practical potential, i.e., it generates rather good car services within very short time.
Modeling information diffusion in time-varying community networks
Cui, Xuelian; Zhao, Narisa
2017-12-01
Social networks are rarely static, and they typically have time-varying network topologies. A great number of studies have modeled temporal networks and explored social contagion processes within these models; however, few of these studies have considered community structure variations. In this paper, we present a study of how the time-varying property of a modular structure influences the information dissemination. First, we propose a continuous-time Markov model of information diffusion where two parameters, mobility rate and community attractiveness, are introduced to address the time-varying nature of the community structure. The basic reproduction number is derived, and the accuracy of this model is evaluated by comparing the simulation and theoretical results. Furthermore, numerical results illustrate that generally both the mobility rate and community attractiveness significantly promote the information diffusion process, especially in the initial outbreak stage. Moreover, the strength of this promotion effect is much stronger when the modularity is higher. Counterintuitively, it is found that when all communities have the same attractiveness, social mobility no longer accelerates the diffusion process. In addition, we show that the local spreading in the advantage group has been greatly enhanced due to the agglomeration effect caused by the social mobility and community attractiveness difference, which thus increases the global spreading.
An innovation diffusion model for new mobile technologies acceptance
Directory of Open Access Journals (Sweden)
Barkoczia Nadi
2017-01-01
Full Text Available This paper aims to approach the diffusion model developed in 1960 by Frank Bass has been utilized to study the distribution of different types of new products and services. The Bass Model helps by describing the process in which new products are adopted in a market. This model is a useful tool for predicting the first purchase of an innovative product for which there are competing alternatives on the market. It also provides the innovator with information regarding the size of customers and the adoption time for the product. The second part of the paper is dedicated to a monographic study of specific conceptual correlations between the diffusion of technology and marketing management that emphasizes technological uncertainty and market uncertainty as major risks to innovative projects. In the final section, the results of empirical research conducted in Baia-Mare, Romania will be presented in a way that uses diffusion Bass model to estimate the adoption period for new mobile technologies.
Water diffusion in bicelles and the mixed bicelle model.
Soong, Ronald; Macdonald, Peter M
2009-01-06
To test a prediction of the mixed bicelle model, stimulated echo (STE) pulsed field gradient (PFG) (1)H nuclear magnetic resonance (NMR) measurements of water diffusion between and across bicellar lamellae were performed in positively and negatively magnetically aligned bicelles, composed of mixtures of DHPC (1,2-dihexanoyl-sn-glycero-3-phosphocholine) and DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine), as a function of temperature and of the proportion of added short-chain lipid DHPC. (31)P NMR spectra obtained for each situation confirmed that the DHPC undergoes fast exchange between curved and planar regions as per the mixed bicelle model and permitted an estimate of the proportion of the two DHPC populations. Water diffusion across the bicellar lamellae was shown to scale directly with q*, the fraction of edge versus planar phospholipid, rather than simply the ratio q, the global fraction of long-chain to short-chain phospholipid. Geometric modeling of the dependence of water diffusion on q* suggested an upper limit of 400 A for the size of DHPC-rich toroidal perforations within the bicelle lamellae. These findings constitute an independent confirmation of the mixed bicelle model in which DHPC is not confined to edge regions but enjoys, instead, a finite miscibility with DMPC.
Directory of Open Access Journals (Sweden)
Omid Arjmandi-Tash
2012-12-01
Full Text Available Introduction: Atherosclerosis is a focal disease that susceptibly forms near bifurcations, anastomotic joints, side branches, and curved vessels along the arterial tree. In this study, pulsatile blood flow in a bifurcation model with a non-planar branch is investigated. Methods: Wall shear stress (WSS distributions along generating lines on vessels for different bifurcation angles are calculated during the pulse cycle. Results: The WSS at the outer side of the bifurcation plane vanishes especially for higher bifurcation angles but by increasing the bifurcation angle low WSS region squeezes. At the systolic phase there is a high possibility of formation of a separation region at the outer side of bifurcation plane for all the cases. WSS peaks exist on the inner side of bifurcation plane near the entry section of daughter vessels and these peaks drop as bifurcation angle is increased. Conclusion: It was found that non-planarity of the daughter vessel lowers the minimum WSS at the outer side of the bifurcation and increases the maximum WSS at the inner side. So it seems that the formation of atherosclerotic plaques at bifurcation region in direction of non-planar daughter vessel is more risky.
Experimental exploration of diffusion panel labyrinth in scale model
Vance, Mandi M.
Small rehearsal and performance venues often lack the rich reverberation found in larger spaces. Higini Arau-Puchades has designed and implemented a system of diffusion panels in the Orchestra Rehearsal Room at the Great Theatre Liceu and the Tonhalle St. Gallen that lengthen the reverberation time. These panels defy traditional room acoustics theory which holds that adding material to a room will shorten the reverberation time. This work explores several versions of Arau-Puchades' panels and room characteristics in scale model. Reverberation times are taken from room impulse response measurements in order to better understand the unusual phenomenon. Scale modeling enables many tests but has limitations in its accuracy due to the higher frequency range involved. Further investigations are necessary to establish how the sound energy interacts with the diffusion panels and confirm their validity in a range of applications.
VON MISES-FISHER MIXTURE MODEL OF THE DIFFUSION ODF
McGraw, Tim; Vemuri, Baba C.; Yezierski, Bob; Mareci, Thomas
2009-01-01
High angular resolution diffusion imaging (HARDI) permits the computation of water molecule displacement probabilities over the sphere. This probability is often referred to as the orientation distribution function (ODF). In this paper we present a novel model for representing this diffusion ODF namely, a mixture of von Mises-Fisher (vMF) distributions. Our model is compact in that it requires very few parameters to represent complicated ODF geometries which occur specifically in the presence of heterogeneous nerve fiber orientations. We present a Riemannian geometric framework for computing intrinsic distances (in closed-form) and for performing interpolation between ODFs represented by vMF mixtures. We also present closed-form equations for entropy and variance based anisotropy measures that are then computed and illustrated for real HARDI data from a rat brain. PMID:19759891
Modeling and Analysis of New Products Diffusion on Heterogeneous Networks
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Shuping Li
2014-01-01
Full Text Available We present a heterogeneous networks model with the awareness stage and the decision-making stage to explain the process of new products diffusion. If mass media is neglected in the decision-making stage, there is a threshold whether the innovation diffusion is successful or not, or else it is proved that the network model has at least one positive equilibrium. For networks with the power-law degree distribution, numerical simulations confirm analytical results, and also at the same time, by numerical analysis of the influence of the network structure and persuasive advertisements on the density of adopters, we give two different products propagation strategies for two classes of nodes in scale-free networks.
Social influence and perceptual decision making: a diffusion model analysis.
Germar, Markus; Schlemmer, Alexander; Krug, Kristine; Voss, Andreas; Mojzisch, Andreas
2014-02-01
Classic studies on social influence used simple perceptual decision-making tasks to examine how the opinions of others change individuals' judgments. Since then, one of the most fundamental questions in social psychology has been whether social influence can alter basic perceptual processes. To address this issue, we used a diffusion model analysis. Diffusion models provide a stochastic approach for separating the cognitive processes underlying speeded binary decisions. Following this approach, our study is the first to disentangle whether social influence on decision making is due to altering the uptake of available sensory information or due to shifting the decision criteria. In two experiments, we found consistent evidence for the idea that social influence alters the uptake of available sensory evidence. By contrast, participants did not adjust their decision criteria.
Stationary Patterns of a Cross-Diffusion Epidemic Model
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Yongli Cai
2013-01-01
Full Text Available We investigate the complex dynamics of cross-diffusion SI epidemic model. We first give the conditions of the local and global stability of the nonnegative constant steady states, which indicates that the basic reproduction number determines whether there is an endemic outbreak or not. Furthermore, we prove the existence and nonexistence of the positive nonconstant steady states, which guarantees the existence of the stationary patterns.
Modeling diffusion of an alkaline plume in a clay barrier
Gaucher, Eric C.; Blanc, Philippe; Matray, Jean-Michel; Michau, Nicolas
2004-01-01
International audience; The design of clay plugs used for sealing access galleries to a radioactive waste repository built with concrete structures in a deep clayey formation must take into consideration their chemical evolution over time. Diffusion of an alkaline plume from concrete into bentonite was therefore modeled over a 100 ka period with the PHREEQC geochemical code in order to determine, as a function of time, modifications to mineral surfaces, dissolution of existing minerals and pr...
A heuristic model for computational prediction of human branch point sequence.
Wen, Jia; Wang, Jue; Zhang, Qing; Guo, Dianjing
2017-10-24
Pre-mRNA splicing is the removal of introns from precursor mRNAs (pre-mRNAs) and the concurrent ligation of the flanking exons to generate mature mRNA. This process is catalyzed by the spliceosome, where the splicing factor 1 (SF1) specifically recognizes the seven-nucleotide branch point sequence (BPS) and the U2 snRNP later displaces the SF1 and binds to the BPS. In mammals, the degeneracy of BPS motifs together with the lack of a large set of experimentally verified BPSs complicates the task of BPS prediction in silico. In this paper, we develop a simple and yet efficient heuristic model for human BPS prediction based on a novel scoring scheme, which quantifies the splicing strength of putative BPSs. The candidate BPS is restricted exclusively within a defined BPS search region to avoid the influences of other elements in the intron and therefore the prediction accuracy is improved. Moreover, using two types of relative frequencies for human BPS prediction, we demonstrate our model outperformed other current implementations on experimentally verified human introns. We propose that the binding energy contributes to the molecular recognition involved in human pre-mRNA splicing. In addition, a genome-wide human BPS prediction is carried out. The characteristics of predicted BPSs are in accordance with experimentally verified human BPSs, and branch site positions relative to the 3'ss and the 5'end of the shortened AGEZ are consistent with the results of published papers. Meanwhile, a webserver for BPS predictor is freely available at http://biocomputer.bio.cuhk.edu.hk/BPS .
The Horizontal Branch morphology in Globular Clusters: consequences for the selfpollution model
D'Antona, Francesca
The Joint Discussion 4 of the Sydney IAU General Assembly takes place at a very interesting stage for the Globular Cluster (GC) astrophysics, when it is becoming clear that many -if not all- of the inhomogeneities in the chemical composition of GC stars are due to some mechanism of primordial enrichment. The best candidate for ``self-pollution" is identified with the matter lost in winds of low velocity from Asymptotic Giant Branch (AGB) stars, especially of high mass, evolving during the first phases of life of the Clusters, and cycling their envelope material through hot CNO-cycle at the bottom of their convective envelopes (Hot Bottom Burning -HBB). Recognition that Globular Clusters showing large chemical anomalies are also peculiar in their Horizontal Branch (HB) stars distribution, led D'Antona et al. (2002) to suggest that extended blue tails are directly linked to the enhanced helium in the matter, processed through HBB, from which these stars are born. Here we show that other HB peculiar morphologies --such as the lack of stars in the RR Lyrae region, in clusters like NGC 2808, whose red and blue side of the HB are both well populated-- can be attributed to the helium enrichment of the matter from which the stars populating the whole blue HB in this cluster were born. This interpretation lends credit to the idea that the GC stars are formed in two main generations, the first one having the composition of the primordial gas cloud, the second one formed directly from the AGB ejecta over a span of time lasting ˜ 2 × 108yr. This hypothesis provides a useful and conceptually simple key not only to interpret some --but not all-- HB peculiarities, but also to understand the distribution of abundance anomalies. If the model is correct, in the end we can use the abundance anomalies to falsify (or calibrate) our AGB models.
Two-phase flow with surfactants: Diffuse interface models and their analysis
Abels, Helmut; Lam, Kei Fong; Weber, Josef
2016-01-01
New diffuse interface and sharp interface models for soluble and insoluble surfactants fulfilling energy inequalities are introduced. We discuss their relation with the help of asymptotic analysis and present an existence result for a particular diffuse interface model.
Two-Branch Break-up Systems by a Single Mantle Plume: Insights from Numerical Modeling
Beniest, A.; Koptev, A.; Leroy, S.; Sassi, W.; Guichet, X.
2017-10-01
Thermomechanical modeling of plume-induced continental break-up reveals that the initial location of a mantle anomaly relative to a lithosphere inhomogeneity has a major impact on the geometry and timing of a rift-to-spreading system. Models with a warmer Moho temperature are more likely to result in "plume-centered" mode, where the rift and subsequent spreading axis grow directly above the plume. Models with weak far-field forcing are inclined to develop a "structural-inherited" mode, with lithosphere deformation localized at the lateral lithospheric boundary. Models of a third group cultivate two break-up branches (both "plume-centered" and "structural inherited") that form consecutively with a few million years delay. With our experimental setup, this break-up mode is sensitive to relatively small lateral variations of the initial anomaly position. We argue that one single mantle anomaly can be responsible for nonsimultaneous initiation and development of two rift-to-spreading systems in a lithosphere with a lateral strength contrast.
Multiscale modeling of spin transport across a diffuse interface
Chureemart, J.; Cuadrado, R.; Chureemart, P.; Chantrell, R. W.
2017-12-01
We present multiscale calculations to describe the spin transport behavior of the Co/Cu bilayer structure including the effect of the interface. The multiscale approach introduces the connection between the ab initio calculation used to describe the electronic structure of the system and the generalized spin accumulation model employed to describe the spin transport behavior. We have applied our model to atomically smooth and diffuse interfaces. The results demonstrate the huge importance of the use of first principle calculations, not only due to the interfacial coordinates optimization but also the magnetic and electronic properties obtained through the electronic structure. The system including the effect of interface with and without the charge fluctuation are studied. The results indicate that changes of electronic structure at the Co/Cu interface give rise to an interfacial resistance distributed over several atomic planes, similar to the effect of interface diffusion. We argue that even atomically smooth Co/Cu interfaces have properties analogous to a diffuse interface due to the variation of electronic structure at the interface.
Do Coupled Climate Models Correctly SImulate the Upward Branch of the Deept Ocean Global Conveyor?
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Sarmiento, Jorge L; Downes, Stephanie; Bianchi, Daniele
2013-01-17
The large-scale meridional overturning circulation (MOC) connects the deep ocean, a major reservoir of carbon, to the other components of the climate system and must therefore be accurately represented in Earth System Models. Our project aims to address the specific question of the pathways and mechanisms controlling the upwelling branch of the MOC, a subject of significant disagreement between models and observational syntheses, and among general circulation models. Observations of these pathways are limited, particularly in regions of complex hydrography such as the Southern Ocean. As such, we rely on models to examine theories of the overturning circulation, both physically and biogeochemically. This grant focused on a particular aspect of the meridional overturning circulation (MOC) where there is currently significant disagreement between models and observationally based analyses of the MOC, and amongst general circulation models. In particular, the research focused on addressing the following questions: 1. Where does the deep water that sinks in the polar regions rise to the surface? 2. What processes are responsible for this rise? 3. Do state-of-the-art coupled GCMs capture these processes? Our research had three key components: observational synthesis, model development and model analysis. In this final report we outline the key results from these areas of research for the 2007 to 2012 grant period. The research described here was carried out primarily by graduate student, Daniele Bianchi (now a Postdoc at McGill University, Canada), and Postdoc Stephanie Downes (now a Research Fellow at The Australian national University, Australia). Additional support was provided for programmers Jennifer Simeon as well as Rick Slater.
Charge diffusion in the one-dimensional Hubbard model
Steinigeweg, R.; Jin, F.; De Raedt, H.; Michielsen, K.; Gemmer, J.
2017-08-01
We study the real-time and real-space dynamics of charge in the one-dimensional Hubbard model in the limit of high temperatures. To this end, we prepare pure initial states with sharply peaked density profiles and calculate the time evolution of these nonequilibrium states, by using numerical forward-propagation approaches to chains as long as 20 sites. For a class of typical states, we find excellent agreement with linear-response theory and unveil the existence of remarkably clean charge diffusion in the regime of strong particle-particle interactions. We additionally demonstrate that, in the half-filling sector, this diffusive behavior does not depend on certain details of our initial conditions, i.e., it occurs for five different realizations with random and nonrandom internal degrees of freedom, single and double occupation of the central site, and displacement of spin-up and spin-down particles.
Partial Differential Equations of an Epidemic Model with Spatial Diffusion
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El Mehdi Lotfi
2014-01-01
Full Text Available The aim of this paper is to study the dynamics of a reaction-diffusion SIR epidemic model with specific nonlinear incidence rate. The global existence, positivity, and boundedness of solutions for a reaction-diffusion system with homogeneous Neumann boundary conditions are proved. The local stability of the disease-free equilibrium and endemic equilibrium is obtained via characteristic equations. By means of Lyapunov functional, the global stability of both equilibria is investigated. More precisely, our results show that the disease-free equilibrium is globally asymptotically stable if the basic reproduction number is less than or equal to unity, which leads to the eradication of disease from population. When the basic reproduction number is greater than unity, then disease-free equilibrium becomes unstable and the endemic equilibrium is globally asymptotically stable; in this case the disease persists in the population. Numerical simulations are presented to illustrate our theoretical results.
Analysis on a diffusive SIS epidemic model with logistic source
Li, Bo; Li, Huicong; Tong, Yachun
2017-08-01
In this paper, we are concerned with an SIS epidemic reaction-diffusion model with logistic source in spatially heterogeneous environment. We first discuss some basic properties of the parabolic system, including the uniform upper bound of solutions and global stability of the endemic equilibrium when spatial environment is homogeneous. Our primary focus is to determine the asymptotic profile of endemic equilibria (when exist) if the diffusion (migration) rate of the susceptible or infected population is small or large. Combined with the results of Li et al. (J Differ Equ 262:885-913, 2017) where the case of linear source is studied, our analysis suggests that varying total population enhances persistence of infectious disease.
Time Fractional Diffusion Equations and Analytical Solvable Models
Bakalis, Evangelos; Zerbetto, Francesco
2016-08-01
The anomalous diffusion of a particle that moves in complex environments is analytically studied by means of the time fractional diffusion equation. The influence on the dynamics of a random moving particle caused by a uniform external field is taken into account. We extract analytical solutions in terms either of the Mittag-Leffler functions or of the M- Wright function for the probability distribution, for the velocity autocorrelation function as well as for the mean and the mean square displacement. Discussion of the applicability of the model to real systems is made in order to provide new insight of the medium from the analysis of the motion of a particle embedded in it.
Affinity based information diffusion model in social networks
Liu, Hongli; Xie, Yun; Hu, Haibo; Chen, Zhigao
2014-12-01
There is a widespread intuitive sense that people prefer participating in spreading the information in which they are interested. The affinity of people with information disseminated can affect the information propagation in social networks. In this paper, we propose an information diffusion model incorporating the mechanism of affinity of people with information which considers the fitness of affinity values of people with affinity threshold of the information. We find that the final size of information diffusion is affected by affinity threshold of the information, average degree of the network and the probability of people's losing their interest in the information. We also explore the effects of other factors on information spreading by numerical simulations and find that the probabilities of people's questioning and confirming the information can affect the propagation speed, but not the final scope.
Modeling of Moisture Diffusion in Carbon Braided Composites
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S. Laurenzi
2008-01-01
Full Text Available In this study, we develop a methodology based on finite element analysis to predict the weight gain of carbon braided composite materials exposed to moisture. The analysis was based on the analogy between thermal conduction and diffusion processes, which allowed for a commercial code for finite element analysis to be used. A detailed finite element model using a repetitive unit cell (RUC was developed both for bundle and carbon braided composites. Conditioning tests were performed to estimate the diffusivity of both the resin and composite. When comparing numerical and experimental results, it was observed that the procedure introduces an average error of 20% and a maximum error of 31% if the RUC is assumed to be isotropic. On the other hand, the average error does not exceed 10% and the maximum error is less than 20% when the material is considered as orthotropic. The procedure is independent of the particular fiber architecture and can be extended to other composites.
Edge of chaos in reaction diffusion CNN model
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Slavova Angela
2017-02-01
Full Text Available In this paper, we study the dynamics of a reaction-diffusion Cellular Nonlinear Network (RD-CNN nodel in which the reaction term is represented by Brusselator cell. We investigate the RD-CNN dynamics by means of describing function method. Comparison with classical results for Brusselator equation is provided. Then we introduce a new RD-CNN model with memristor coupling, for which the edge of chaos regime in the parameter space is determined. Numerical simulations are presented for obtaining dynamic patterns in the RD-CNN model with memristor coupling.
Jones, A P
2016-12-01
The origin of the diffuse interstellar bands (DIBs), one of the longest-standing mysteries of the interstellar medium (ISM), is explored within the framework of The Heterogeneous dust Evolution Model for Interstellar Solids (THEMIS). The likely nature of the DIB carriers and their evolution is here explored within the framework of the structures and sub-structures inherent to doped hydrogenated amorphous carbon grains in the ISM. Based on the natural aromatic-rich moieties (asphaltenes) recovered from coal and oil, the likely structure of their interstellar analogues is investigated within the context of the diffuse band problem. It is here proposed that the top-down evolution of interstellar carbonaceous grains, and, in particular, a-C(:H) nanoparticles, is at the heart of the formation and evolution of the DIB carriers and their associations with small molecules and radicals, such as C2, C3, CH and CN. It is most probable that the DIBs are carried by dehydrogenated, ionized, hetero-cyclic, olefinic and aromatic-rich moieties that form an integral part of the contiguous structure of hetero-atom-doped hydrogenated amorphous carbon nanoparticles and their daughter fragmentation products. Within this framework, it is proposed that polyene structures in all their variants could be viable DIB carrier candidates.
A diffusion model for host-parasite interaction
Milner, Fabio Augusto; Patton, Curtis Allan
2003-05-01
A variety of host-parasite models are found in the literature. They usually consist of a small number of ordinary differential equations, which describe the dynamics of the total number of hosts and the total number of parasites. The authors introduced earlier a new approach to such models using a partial differential equation which uses the parasite density as a continuous structure variable. So far the new model contained only convective terms with respect to this variable, and the qualitative properties of solutions were not in agreement with observed parasite distributions. In the present work, the authors introduce diffusive terms to the previous model. Results of simulations for a specific host-parasite system appearing in fish farms are presented. These show a much better qualitative fit with real data than results from simulations with any other models.
A discrete model to study reaction-diffusion-mechanics systems.
Weise, Louis D; Nash, Martyn P; Panfilov, Alexander V
2011-01-01
This article introduces a discrete reaction-diffusion-mechanics (dRDM) model to study the effects of deformation on reaction-diffusion (RD) processes. The dRDM framework employs a FitzHugh-Nagumo type RD model coupled to a mass-lattice model, that undergoes finite deformations. The dRDM model describes a material whose elastic properties are described by a generalized Hooke's law for finite deformations (Seth material). Numerically, the dRDM approach combines a finite difference approach for the RD equations with a Verlet integration scheme for the equations of the mass-lattice system. Using this framework results were reproduced on self-organized pacemaking activity that have been previously found with a continuous RD mechanics model. Mechanisms that determine the period of pacemakers and its dependency on the medium size are identified. Finally it is shown how the drift direction of pacemakers in RDM systems is related to the spatial distribution of deformation and curvature effects.
Gentsch, Lydia; Hammerle, Albin; Sturm, Patrick; Ogée, Jérôme; Wingate, Lisa; Siegwolf, Rolf; Plüss, Peter; Baur, Thomas; Buchmann, Nina; Knohl, Alexander
2014-07-01
Field measurements of photosynthetic carbon isotope discrimination ((13)Δ) of Fagus sylvatica, conducted with branch bags and laser spectrometry, revealed a high variability of (13)Δ, both on diurnal and day-to-day timescales. We tested the prediction capability of three versions of a commonly used model for (13)Δ [called here comprehensive ((13)(Δcomp)), simplified ((13) Δsimple) and revised ((13)(Δrevised)) versions]. A Bayesian approach was used to calibrate major model parameters. Constrained estimates were found for the fractionation during CO(2) fixation in (13)(Δcomp), but not in (13)(Δsimple), and partially for the mesophyll conductance for CO(2)(gi). No constrained estimates were found for fractionations during mitochondrial and photorespiration, and for a diurnally variable apparent fractionation between current assimilates and mitochondrial respiration, specific to (13)(Δrevised). A quantification of parameter estimation uncertainties and interdependencies further helped explore model structure and behaviour. We found that (13)(Δcomp) usually outperformed (13)(Δsimple) because of the explicit consideration of gi and the photorespiratory fractionation in (13)(Δcomp) that enabled a better description of the large observed diurnal variation (≈9‰) of (13)Δ. Flux-weighted daily means of (13)Δ were also better predicted with (13)(Δcomp) than with (13)(Δsimple). © 2013 John Wiley & Sons Ltd.
Sooting Characteristics and Modeling in Counterflow Diffusion Flames
Wang, Yu
2013-11-01
Soot formation is one of the most complex phenomena in combustion science and an understanding of the underlying physico-chemical mechanisms is important. This work adopted both experimental and numerical approaches to study soot formation in laminar counterfl ow diffusion flames. As polycyclic aromatic hydrocarbons (PAHs) are the precursors of soot particles, a detailed gas-phase chemical mechanism describing PAH growth upto coronene for fuels with 1 to 4 carbon atoms was validated against laminar premixed and counter- flow diffusion fl ames. Built upon this gas-phase mechanism, a soot model was then developed to describe soot inception and surface growth. This soot model was sub- sequently used to study fuel mixing effect on soot formation in counterfl ow diffusion flames. Simulation results showed that compared to the baseline case of the ethylene flame, the doping of 5% (by volume) propane or ethane in ethylene tends to increase the soot volume fraction and number density while keeping the average soot size almost unchanged. These results are in agreement with experimental observations. Laser light extinction/scattering as well as laser induced fluorescence techniques were used to study the effect of strain rate on soot and PAH formation in counterfl ow diffusion ames. The results showed that as strain rate increased both soot volume fraction and PAH concentrations decreased. The concentrations of larger PAH were more sensitive to strain rate compared to smaller ones. The effect of CO2 addition on soot formation was also studied using similar experimental techniques. Soot loading was reduced with CO2 dilution. Subsequent numerical modeling studies were able to reproduce the experimental trend. In addition, the chemical effect of CO2 addition was analyzed using numerical data. Critical conditions for the onset of soot were systematically studied in counterfl ow diffusion ames for various gaseous hydrocarbon fuels and at different strain rates. A sooting
Application of the evolution theory in modelling of innovation diffusion
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Krstić Milan
2016-01-01
Full Text Available The theory of evolution has found numerous analogies and applications in other scientific disciplines apart from biology. In that sense, today the so-called 'memetic-evolution' has been widely accepted. Memes represent a complex adaptable system, where one 'meme' represents an evolutional cultural element, i.e. the smallest unit of information which can be identified and used in order to explain the evolution process. Among others, the field of innovations has proved itself to be a suitable area where the theory of evolution can also be successfully applied. In this work the authors have started from the assumption that it is also possible to apply the theory of evolution in the modelling of the process of innovation diffusion. Based on the conducted theoretical research, the authors conclude that the process of innovation diffusion in the interpretation of a 'meme' is actually the process of imitation of the 'meme' of innovation. Since during the process of their replication certain 'memes' show a bigger success compared to others, that eventually leads to their natural selection. For the survival of innovation 'memes', their manifestations are of key importance in the sense of their longevity, fruitfulness and faithful replicating. The results of the conducted research have categorically confirmed the assumption of the possibility of application of the evolution theory with the innovation diffusion with the help of innovation 'memes', which opens up the perspectives for some new researches on the subject.
On Large Time Behavior and Selection Principle for a Diffusive Carr-Penrose Model
Conlon, Joseph G.; Dabkowski, Michael; Wu, Jingchen
2016-04-01
This paper is concerned with the study of a diffusive perturbation of the linear LSW model introduced by Carr and Penrose. A main subject of interest is to understand how the presence of diffusion acts as a selection principle, which singles out a particular self-similar solution of the linear LSW model as determining the large time behavior of the diffusive model. A selection principle is rigorously proven for a model which is a semiclassical approximation to the diffusive model. Upper bounds on the rate of coarsening are also obtained for the full diffusive model.
A Reaction-Diffusion Model of Cholinergic Retinal Waves
Lansdell, Benjamin; Ford, Kevin; Kutz, J. Nathan
2014-01-01
Prior to receiving visual stimuli, spontaneous, correlated activity in the retina, called retinal waves, drives activity-dependent developmental programs. Early-stage waves mediated by acetylcholine (ACh) manifest as slow, spreading bursts of action potentials. They are believed to be initiated by the spontaneous firing of Starburst Amacrine Cells (SACs), whose dense, recurrent connectivity then propagates this activity laterally. Their inter-wave interval and shifting wave boundaries are the result of the slow after-hyperpolarization of the SACs creating an evolving mosaic of recruitable and refractory cells, which can and cannot participate in waves, respectively. Recent evidence suggests that cholinergic waves may be modulated by the extracellular concentration of ACh. Here, we construct a simplified, biophysically consistent, reaction-diffusion model of cholinergic retinal waves capable of recapitulating wave dynamics observed in mice retina recordings. The dense, recurrent connectivity of SACs is modeled through local, excitatory coupling occurring via the volume release and diffusion of ACh. In addition to simulation, we are thus able to use non-linear wave theory to connect wave features to underlying physiological parameters, making the model useful in determining appropriate pharmacological manipulations to experimentally produce waves of a prescribed spatiotemporal character. The model is used to determine how ACh mediated connectivity may modulate wave activity, and how parameters such as the spontaneous activation rate and sAHP refractory period contribute to critical wave size variability. PMID:25474327
Reaction-Diffusion Modeling ERK- and STAT-Interaction Dynamics
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Georgiev Nikola
2006-01-01
Full Text Available The modeling of the dynamics of interaction between ERK and STAT signaling pathways in the cell needs to establish the biochemical diagram of the corresponding proteins interactions as well as the corresponding reaction-diffusion scheme. Starting from the verbal description available in the literature of the cross talk between the two pathways, a simple diagram of interaction between ERK and STAT5a proteins is chosen to write corresponding kinetic equations. The dynamics of interaction is modeled in a form of two-dimensional nonlinear dynamical system for ERK—and STAT5a —protein concentrations. Then the spatial modeling of the interaction is accomplished by introducing an appropriate diffusion-reaction scheme. The obtained system of partial differential equations is analyzed and it is argued that the possibility of Turing bifurcation is presented by loss of stability of the homogeneous steady state and forms dissipative structures in the ERK and STAT interaction process. In these terms, a possible scaffolding effect in the protein interaction is related to the process of stabilization and destabilization of the dissipative structures (pattern formation inherent to the model of ERK and STAT cross talk.
Compact Models for Defect Diffusivity in Semiconductor Alloys.
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Wright, Alan F. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Nanostructure Physics Department; Modine, Normand A. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Nanostructure Physics Department; Lee, Stephen R. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Advanced Materials Sciences Department; Foiles, Stephen M. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Computational Materials and Data Science Department
2017-09-01
Predicting transient effects caused by short - pulse neutron irradiation of electronic devices is an important part of Sandia's mission. For example , predicting the diffusion of radiation - induced point defects is needed with in Sandia's Qualification Alternative to the Sandia Pulsed Reactor (QASPR) pro gram since defect diffusion mediates transient gain recovery in QASPR electronic devices. Recently, the semiconductors used to fabricate radiation - hard electronic devices have begun to shift from silicon to III - V compounds such as GaAs, InAs , GaP and InP . An advantage of this shift is that it allows engineers to optimize the radiation hardness of electronic devices by using alloy s such as InGaAs and InGaP . However, the computer codes currently being used to simulate transient radiation effects in QASP R devices will need to be modified since they presume that defect properties (charge states, energy levels, and diffusivities) in these alloys do not change with time. This is not realistic since the energy and properties of a defect depend on the types of atoms near it and , therefore, on its location in the alloy. In particular, radiation - induced defects are created at nearly random locations in an alloy and the distribution of their local environments - and thus their energies and properties - evolves with time as the defects diffuse through the alloy . To incorporate these consequential effects into computer codes used to simulate transient radiation effects, we have developed procedures to accurately compute the time dependence of defect energies and properties and then formulate them within compact models that can be employed in these computer codes. In this document, we demonstrate these procedures for the case of the highly mobile P interstitial (I P ) in an InGaP alloy. Further dissemination only as authorized to U.S. Government agencies and their contractors; other requests shall be approved by the originating facility or higher DOE
Li, Biao; Sierra, Amanda; Deudero, Juan Jose; Semerci, Fatih; Laitman, Andrew; Kimmel, Marek; Maletic-Savatic, Mirjana
2017-10-03
Adult hippocampal neurogenesis, the process of formation of new neurons, occurs throughout life in the hippocampus. New neurons have been associated with learning and memory as well as mood control, and impaired neurogenesis has been linked to depression, schizophrenia, autism and cognitive decline during aging. Thus, understanding the biological properties of adult neurogenesis has important implications for human health. Computational models of neurogenesis have attempted to derive biologically relevant knowledge, hard to achieve using experimentation. However, the majority of the computational studies have predominantly focused on the late stages of neurogenesis, when newborn neurons integrate into hippocampal circuitry. Little is known about the early stages that regulate proliferation, differentiation, and survival of neural stem cells and their immediate progeny. Here, based on the branching process theory and biological evidence, we developed a computational model that represents the early stage hippocampal neurogenic cascade and allows prediction of the overall efficiency of neurogenesis in both normal and diseased conditions. Using this stochastic model with a simulation program, we derived the equilibrium distribution of cell population and simulated the progression of the neurogenic cascade. Using BrdU pulse-and-chase experiment to label proliferating cells and their progeny in vivo, we quantified labeled newborn cells and fit the model on the experimental data. Our simulation results reveal unknown but meaningful biological parameters, among which the most critical ones are apoptotic rates at different stages of the neurogenic cascade: apoptotic rates reach maximum at the stage of neuroblasts; the probability of neuroprogenitor cell renewal is low; the neuroblast stage has the highest temporal variance within the cell types of the neurogenic cascade, while the apoptotic stage is short. At a practical level, the stochastic model and simulation framework
Pareto genealogies arising from a Poisson branching evolution model with selection.
Huillet, Thierry E
2014-02-01
We study a class of coalescents derived from a sampling procedure out of N i.i.d. Pareto(α) random variables, normalized by their sum, including β-size-biasing on total length effects (β < α). Depending on the range of α we derive the large N limit coalescents structure, leading either to a discrete-time Poisson-Dirichlet (α, -β) Ξ-coalescent (α ε[0, 1)), or to a family of continuous-time Beta (2 - α, α - β)Λ-coalescents (α ε[1, 2)), or to the Kingman coalescent (α ≥ 2). We indicate that this class of coalescent processes (and their scaling limits) may be viewed as the genealogical processes of some forward in time evolving branching population models including selection effects. In such constant-size population models, the reproduction step, which is based on a fitness-dependent Poisson Point Process with scaling power-law(α) intensity, is coupled to a selection step consisting of sorting out the N fittest individuals issued from the reproduction step.
Clima, Lilia; Ursu, Elena L; Cojocaru, Corneliu; Rotaru, Alexandru; Barboiu, Mihail; Pinteala, Mariana
2015-09-28
The complexes formed by DNA and polycations have received great attention owing to their potential application in gene therapy. In this study, the binding efficiency between double-stranded oligonucleotides (dsDNA) and branched polyethylenimine (B-PEI) has been quantified by processing of the images captured from the gel electrophoresis assays. The central composite experimental design has been employed to investigate the effects of controllable factors on the binding efficiency. On the basis of experimental data and the response surface methodology, a multivariate regression model has been constructed and statistically validated. The model has enabled us to predict the binding efficiency depending on experimental factors, such as concentrations of dsDNA and B-PEI as well as the initial pH of solution. The optimization of the binding process has been performed using simplex and gradient methods. The optimal conditions determined for polyplex formation have yielded a maximal binding efficiency close to 100%. In order to reveal the mechanism of complex formation at the atomic-scale, a molecular dynamic simulation has been carried out. According to the computation results, B-PEI amine hydrogen atoms have interacted with oxygen atoms from dsDNA phosphate groups. These interactions have led to the formation of hydrogen bonds between macromolecules, stabilizing the polyplex structure.
Modeling Diffusion Induced Stresses for Lithium-Ion Battery Materials
Chiu Huang, Cheng-Kai
Advancing lithium-ion battery technology is of paramount importance for satisfying the energy storage needs in the U.S., especially for the application in the electric vehicle industry. To provide a better acceleration for electric vehicles, a fast and repeatable discharging rate is required. However, particle fractures and capacity loss have been reported under high current rate (C-rate) during charging/discharging and after a period of cycling. During charging and discharging, lithium ions extract from and intercalate into electrode materials accompanied with the volume change and phase transition between Li-rich phase and Li-poor phase. It is suggested that the diffusion-induced-stress is one of the main reasons causing capacity loss due to the mechanical degradation of electrode particles. Therefore, there is a fundamental need to provide a mechanistic understanding by considering the structure-mechanics-property interactions in lithium-ion battery materials. Among many cathode materials, the olivine-based lithium-iron-phosphate (LiFePO4) with an orthorhombic crystal structure is one of the promising cathode materials for the application in electric vehicles. In this research we first use a multiphysic approach to investigate the stress evolution, especially on the phase boundary during lithiation in single LiFePO4 particles. A diffusion-controlled finite element model accompanied with the experimentally observed phase boundary propagation is developed via a finite element package, ANSYS, in which lithium ion concentration-dependent anisotropic material properties and volume misfits are incorporated. The stress components on the phase boundary are used to explain the Mode I, Mode II, and Mode III fracture propensities in LiFePO4 particles. The elastic strain energy evolution is also discussed to explain why a layer-by-layer lithium insertion mechanism (i.e. first-order phase transformation) is energetically preferred. Another importation issue is how current
Reading and a diffusion model analysis of reaction time.
Naples, Adam; Katz, Leonard; Grigorenko, Elena L
2012-01-01
Processing speed is associated with reading performance. However, the literature is not clear either on the definition of processing speed or on why and how it contributes to reading performance. In this study we demonstrated that processing speed, as measured by reaction time, is not a unitary construct. Using the diffusion model of two-choice reaction time, we assessed processing speed in a series of same-different reaction time tasks for letter and number strings. We demonstrated that the association between reaction time and reading performance is driven by processing speed for reading-related information, but not motor or sensory encoding speed.
Parametric pattern selection in a reaction-diffusion model.
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Michael Stich
Full Text Available We compare spot patterns generated by Turing mechanisms with those generated by replication cascades, in a model one-dimensional reaction-diffusion system. We determine the stability region of spot solutions in parameter space as a function of a natural control parameter (feed-rate where degenerate patterns with different numbers of spots coexist for a fixed feed-rate. While it is possible to generate identical patterns via both mechanisms, we show that replication cascades lead to a wider choice of pattern profiles that can be selected through a tuning of the feed-rate, exploiting hysteresis and directionality effects of the different pattern pathways.
Analysis of a diffuse interface model of multispecies tumor growth
Czech Academy of Sciences Publication Activity Database
Dai, M.; Feireisl, Eduard; Rocca, E.; Schimperna, G.; Schonbek, M.E.
2017-01-01
Roč. 30, č. 4 (2017), s. 1639-1658 ISSN 0951-7715 EU Projects: European Commission(XE) 320078 - MATHEF Institutional support: RVO:67985840 Keywords : Cahn-Hilliard equation * Darcy law * diffuse interface model Subject RIV: BA - General Mathematics Impact factor: 1.767, year: 2016 http://iopscience.iop.org/article/10.1088/1361-6544/aa6063/meta;jsessionid=73B30CFD9F74DD027762D29C83D3094F.c3.iopscience.cld.iop.org
Digital Repository Service at National Institute of Oceanography (India)
Jyothi, D.; Murty, T.V.R.; Sarma, V.V.; Rao, D.P.
of Marine Sciences Vol. 29, June 2000, pp. 185-187 Short Communication Computation of diffusion coefficients for waters of Gauthami Godavari estuary using one-dimensional advection-diffusion model D Jyothi, T V Ramana Murty, V V Sarma & D P Rao National.... - Jan.) Y2(x) = 8.55283 x + 17.5469 (Jan. - April) These equations would be more useful to get diffusion coefficients for any point along the channel axis, which in turn, helps to compute the concentration of pollutant along the axis of estuary. Thus...
Water Diffusion Modelling of CFB Fly Ash Thermoset Composite
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Villa Ralph P.
2016-01-01
Full Text Available The shift in coal-fired power plants from pulverized coal (PC boiler technology into the greener circulating fluidized bed (CFB boiler technology resulted into a major deviation in the properties of the waste fly ash generated making it less suitable for its previous application as additives for construction materials. A new market for CFB fly ash had to be found for it not to end up as a zero value by-product. Using CFB fly ash as filler for thermoset composites is a new and remarkable application. Only a few studies, however, have been done to characterize the properties of this new material. Further experimentation and analysis may be costly and time-consuming since common procedures are material destructive. A computer-aided modeling of the composite’s water sorption behavior was done. The effect of particle loading, size and shape were considered. These properties were varied and the resulting overall diffusivities were compared to previous experimental studies. The comparison of the model and experimental diffusivity values showed satisfactory results. This model may then provide a cheaper and more time-efficient method for the characterization of the water sorption properties of CFB fly ash thermoset composites. In the future, this may lead to further studies on its application as a green material.
SHIR competitive information diffusion model for online social media
Liu, Yun; Diao, Su-Meng; Zhu, Yi-Xiang; Liu, Qing
2016-11-01
In online social media, opinion divergences and differentiations generally exist as a result of individuals' extensive participation and personalization. In this paper, a Susceptible-Hesitated-Infected-Removed (SHIR) model is proposed to study the dynamics of competitive dual information diffusion. The proposed model extends the classical SIR model by adding hesitators as a neutralized state of dual information competition. It is both hesitators and stable spreaders that facilitate information dissemination. Researching on the impacts of diffusion parameters, it is found that the final density of stiflers increases monotonically as infection rate increases and removal rate decreases. And the advantage information with larger stable transition rate takes control of whole influence of dual information. The density of disadvantage information spreaders slightly grows with the increase of its stable transition rate, while whole spreaders of dual information and the relaxation time remain almost unchanged. Moreover, simulations imply that the final result of competition is closely related to the ratio of stable transition rates of dual information. If the stable transition rates of dual information are nearly the same, a slightly reduction of the smaller one brings out a significant disadvantage in its propagation coverage. Additionally, the relationship of the ratio of final stiflers versus the ratio of stable transition rates presents power characteristic.
Diffusive overshooting in hot bottom burning AGB models
Driebe, T.; Blocker, T.; Herwig, F.; Schonberner, D.
The concept of diffusive overshooting based on hydrodynamical simulations of convection zones (Freytag et al. 1996) has already successfully been introduced to AGB models by Herwig et al. (1997). For a 3 M_odot AGB model sequence, Herwig et al. (1997) found with this prescription of additional slow mixing dredge up, i.e. the production of carbon stars of relatively low masses, as well as the formation of a 13C pocket to drive the s-process in these stars. In this study we investigate the influence of the exponential diffusive overshoot scheme on more massive AGB models which suffer from hot bottom burning (HBB). It is well known that HBB leads to the break-down of the core-mass luminosity relation and to the formation of Li-rich AGB stars. Additionally, it may prevent, at least temporarily, the carbon-star stage due to CN cycling of the enriched envelope matter. These important consequences of HBB depend considerably on the treatment of convection (and mass loss). Consequently, the efficiency of HBB and its competition with dredge-up episodes depend also on the aforementioned additional slow mixing processes which obviously successfully operate at and below the H/He interface.
A chaotic model for advertising diffusion problem with competition
Ip, W. H.; Yung, K. L.; Wang, Dingwei
2012-08-01
In this article, the author extends Dawid and Feichtinger's chaotic advertising diffusion model into the duopoly case. A computer simulation system is used to test this enhanced model. Based on the analysis of simulation results, it is found that the best advertising strategy in duopoly is to increase the advertising investment to reach the best Win-Win situation where the oscillation of market portion will not occur. In order to effectively arrive at the best situation, we define a synthetic index and two thresholds. An estimation method for the parameters of the index and thresholds is proposed in this research. We can reach the Win-Win situation by simply selecting the control parameters to make the synthetic index close to the threshold of min-oscillation state. The numerical example and computational results indicated that the proposed chaotic model is useful to describe and analyse advertising diffusion process in duopoly, it is an efficient tool for the selection and optimisation of advertising strategy.
Directory of Open Access Journals (Sweden)
Hidetaka Tobita
2015-11-01
Full Text Available Polymers are the products of processes and their microstructure can be changed significantly by the reactor systems employed, especially for nonlinear polymers. The Monte Carlo simulation technique, based on the random sampling technique, is used to explore the effect of reactor types on the branched polymer structure, formed through free-radical polymerization with simultaneous long-chain branching and scission, as in the case of low-density polyethylene synthesis. As a simplified model for a tower-type multi-zone reactor, a series of continuous stirred-tank reactors, consisting of one big tank and the same N-1 small tanks is considered theoretically. By simply changing the tank arrangement, various types of branched polymers, from star-like globular structure to a more randomly branched structure, can be obtained, while keeping the following properties of the final products, the monomer conversion to polymer, the average branching and scission densities, and the relationship between the mean-square radius of gyration and molecular weight.
On soot and radiation modeling in buoyant turbulent diffusion flames
Snegirev, Alexander; Markus, Ekaterina; Kuznetsov, Egor; Harris, John; Wu, Ted
2017-10-01
FLUENT simulations of methane- and heptane-fueled buoyant turbulent diffusion flames are presented. Within the large eddy simulation framework three soot formation models (the one-step model by Khan and Greeves, the two-step model by Tesner et al., and the Moss-Brookes model) combined with three soot oxidation models (Fenimore-Jones, Lee et al. and Magnussen-Hjertager models) are compared. The Moss-Brookes soot formation model is then extended to a sooty fuel by introducing a unified piecewise-linear correlation between the soot precursor concentration and the mixture fraction. The correlation is calibrated for heptane, and predictions of soot yield in the overfire region and the radiative fluxes are compared to the measurement data. It is shown for the heptane flame that soot dominates in radiation emission although gas contribution is still considerable being about one third. In the heptane flame, predictions of flame radiative emission and soot yield obtained with the eddy dissipation combustion model (utilizing the single-step global reaction) are compared to those made with the steady flamelet model using the reduced reaction mechanism with 29 species and 52 reactions. A simplified approach to allow for the subgrid turbulence-radiation-reaction interaction (TRRI) in the flame is proposed.
Diffusion in the two-dimensional necklace model for reptation.
Terranova, G; Aldao, C M; Mártin, H O
2007-09-01
An extension of a recently introduced one-dimensional model, the necklace model, is used to study the reptation of a chain of N particles in a two-dimensional square lattice. The mobilities of end and middle particles of a chain are governed by three free parameters. This new model mimics the behavior of a long linear and flexible polymer in a gel. Noninteracting and self-avoiding chains are considered. For both cases, analytical approximations for the diffusion coefficient of the center of mass of the chain, for all values of N , are proposed. The validity of these approximations for different values of the free parameters is verified by means of Monte Carlo simulations. Extensions to higher dimensions are also discussed.
Modeling the Determinants Influencing the Diffusion of Mobile Internet
Alwahaishi, Saleh; Snášel, Václav
2013-04-01
Understanding individual acceptance and use of Information and Communication Technology (ICT) is one of the most mature streams of information systems research. In Information Technology and Information System research, numerous theories are used to understand users' adoption of new technologies. Various models were developed including the Innovation Diffusion Theory, Theory of Reasoned Action, Theory of Planned Behavior, Technology Acceptance Model, and recently, the Unified Theory of Acceptance and Use of Technology. This research composes a new hybrid theoretical framework to identify the factors affecting the acceptance and use of Mobile Internet -as an ICT application- in a consumer context. The proposed model incorporates eight constructs: Performance Expectancy (PE), Effort Expectancy (EE), Facilitating Conditions (FC), Social Influences (SI), Perceived Value (PV), Perceived Playfulness (PP), Attention Focus (AF), and Behavioral intention (BI). Individual differences-namely, age, gender, education, income, and experience are moderating the effects of these constructs on behavioral intention and technology use.
Issues of diffuse pollution model complexity arising from performance benchmarking
Directory of Open Access Journals (Sweden)
2007-01-01
Full Text Available Flow and nitrate dynamics were simulated in two catchments, the River Aire in northern England and the River Ythan in north-east Scotland. In the case of the Aire, a diffuse pollution model was coupled with a river quality model (CASCADE-QUESTOR; in the study of the Ythan, an integrated model (SWAT was used. In each study, model performance was evaluated for differing levels of spatial representation in input data sets (rainfall, soils and land use. In respect of nitrate concentrations, the performance of the models was compared with that of a regression model based on proportions of land cover. The overall objective was to assess the merits of spatially distributed input data sets. In both catchments, specific measures of quantitative performance showed that models using the most detailed available input data contributed, at best, only a marginal improvement over simpler implementations. Hence, the level of complexity used in input data sets has to be determined, not only on multiple criteria of quantitative performance but also on qualitative assessments, reflecting the specific context of the model application and the current and likely future needs of end-users.
The approximate number system acuity redefined: A diffusion model approach
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Joonkoo ePark
2015-12-01
Full Text Available While all humans are capable of nonverbally representing numerical quantity using so-called the approximate number system (ANS, there exist considerable individual differences in its acuity. For example, in a non-symbolic number comparison task, some people find it easy to discriminate brief presentations of 14 dots from 16 dots while others do not. Quantifying individual ANS acuity from such a task has become an essential practice in the field, as individual differences in such a primitive number sense is thought to provide insights into individual differences in learned symbolic math abilities. However, the dominant method of characterizing ANS acuity—computing the Weber fraction (w—only utilizes the accuracy data while ignoring response times (RT. Here, we offer a novel approach of quantifying ANS acuity by using the diffusion model, which accounts both accuracy and RT distributions. Specifically, the drift rate in the diffusion model, which indexes the quality of the stimulus information, is used to capture the precision of the internal quantity representation. Analysis of behavioral data shows that w is contaminated by speed-accuracy tradeoff, making it problematic to be conceptualized as ANS acuity, while drift rate provides a measure more independent from speed-accuracy criterion settings. Furthermore, drift rate is a better predictor of symbolic math ability than w, suggesting a practical utility of the measure. These findings demonstrate critical limitations of the use of w and suggest clear advantages of using drift rate as a measure of primitive numerical competence.
Molecular Modeling of Diffusion on a Crystalline PETN Surface
Energy Technology Data Exchange (ETDEWEB)
Lin, P; Khare, R; Gee, R H; Weeks, B L
2007-07-13
Surface diffusion on a PETN crystal was investigated by treating the surface diffusion as an activated process in the formalism of transition state theory. In particular, surface diffusion on the (110) and (101) facets, as well as diffusion between these facets, were considered. We successfully obtained the potential energy barriers required for PETN surface diffusion. Our results show that the (110) surface is more thermally active than the (101) surface and PETN molecules mainly diffuses from the (110) to (101) facet. These results are in good agreement with experimental observations and previous simulations.
Pre-Clinical Models of Diffuse Intrinsic Pontine Glioma
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Oren J Becher
2015-07-01
Full Text Available Diffuse Intrinsic Pontine Glioma (DIPG is a rare and incurable brain tumor that arises in the brainstem of children predominantly between the ages of six and eight. Its intricate morphology and involvement of normal pons tissue precludes surgical resection, and the standard of care today remains fractionated radiation alone. In the past 30 years, there have been no significant advances made in the treatment of DIPG. This is largely because we lack good models of DIPG and therefore have little biological basis for treatment. In recent years however, due to increased biopsy and acquisition of autopsy specimens, research is beginning to unravel the genetic and epigenetic drivers of DIPG. Insight gleaned from these studies has led to improvements in approaches to both model these tumors in the lab, as well as to potentially treat them in the clinic. This review will detail the initial strides towards modeling DIPG in animals, which included allograft and xenograft rodent models using non-DIPG glioma cells. Important advances in the field came with the development of in vitro cell and in vivo xenograft models derived directly from autopsy material of DIPG patients or from human embryonic stem cells. Lastly, we will summarize the progress made in the development of genetically engineered mouse models of DIPG. Cooperation of studies incorporating all of these modeling systems to both investigate the unique mechanisms of gliomagenesis in the brainstem and to test potential novel therapeutic agents in a preclinical setting will result in improvement in treatments for DIPG patients.
A self-consistent spin-diffusion model for micromagnetics
Abert, Claas
2016-12-17
We propose a three-dimensional micromagnetic model that dynamically solves the Landau-Lifshitz-Gilbert equation coupled to the full spin-diffusion equation. In contrast to previous methods, we solve for the magnetization dynamics and the electric potential in a self-consistent fashion. This treatment allows for an accurate description of magnetization dependent resistance changes. Moreover, the presented algorithm describes both spin accumulation due to smooth magnetization transitions and due to material interfaces as in multilayer structures. The model and its finite-element implementation are validated by current driven motion of a magnetic vortex structure. In a second experiment, the resistivity of a magnetic multilayer structure in dependence of the tilting angle of the magnetization in the different layers is investigated. Both examples show good agreement with reference simulations and experiments respectively.
A Jump Diffusion Model for Volatility and Duration
DEFF Research Database (Denmark)
Wei, Wei; Pelletier, Denis
by the market microstructure theory. Traditional measures of volatility do not utilize durations. I adopt a jump diffusion process to model the persistence of intraday volatility and conditional duration, and their interdependence. The jump component is disentangled from the continuous part of the price......, volatility and conditional duration process. I develop a MCMC algorithm for the inference of irregularly spaced multivariate process with jumps. The algorithm provides smoothed estimates of the latent variables such as spot volatility, jump times and jump sizes. I apply this model to IBM data and I find...... meaningful relationship between volatility and conditional duration. Also, jumps play an important role in the total variation, but the jump variation is smaller than traditional measures that use returns sampled at lower frequency....
Modelling polarized light from dust shells surrounding asymptotic giant branch stars
Aronson, E.; Bladh, S.; Höfner, S.
2017-07-01
Context. Winds of asymptotic giant branch (AGB) stars are commonly assumed to be driven by radiative acceleration of dust grains. For M-type AGB stars, the nature of the wind-driving dust species has been a matter of intense debate. A proposed source of the radiation pressure triggering the outflows is photon scattering on Fe-free silicate grains. This wind-driving mechanism requires grain radii of about 0.1-1 micron in order to make the dust particles efficient at scattering radiation around the stellar flux maximum. Grain size is therefore an important parameter for understanding the physics behind the winds of M-type AGB stars. Aims: We seek to investigate the diagnostic potential of scattered polarized light for determining dust grain sizes. Methods: We have developed a new tool for computing synthetic images of scattered light in dust and gas shells around AGB stars, which can be applied to detailed models of dynamical atmospheres and dust-driven winds. Results: We present maps of polarized light using dynamical models computed with the DARWIN code. The synthetic images clearly show that the intensity of the polarized light, the position of the inner edge of the dust shell, and the size of the dust grains near the inner edge are all changing with the luminosity phase. Non-spherical structures in the dust shells can also have an impact on the polarized light. We simulate this effect by combining different pulsation phases into a single 3D structure before computing synthetic images. An asymmetry of the circumstellar envelope can create a net polarization, which can be used as diagnostics for the grain size. The ratio between the size of the scattering particles and the observed wavelength determines at what wavelengths net polarization switches direction. If observed, this can be used to constrain average particle sizes.
Directory of Open Access Journals (Sweden)
Lee Shaish
Full Text Available Phenotypic plasticity enables multicellular organisms to adjust morphologies and various life history traits to variable environmental challenges. Here, we elucidate fixed and plastic architectural rules for colony astogeny in multiple types of colonial ramets, propagated by cutting from genets of the branching coral Stylophora pistillata from Eilat, the Red Sea. We examined 16 morphometric parameters on 136 one-year old S. pistillata colonies (of seven genotypes, originating from small fragments belonging, each, to one of three single-branch types (single tips, start-up, and advanced bifurcating tips or to structural preparative manipulations (representing a single or two growth axes. Experiments were guided by the rationale that in colonial forms, complexity of evolving phenotypic plasticity can be associated with a degree of structural modularity, where shapes are approached by erecting iterative growth patterns at different levels of coral-colony organization. Analyses revealed plastic morphometric characters at branch level, and predetermined morphometric traits at colony level (only single trait exhibited plasticity under extreme manipulation state. Therefore, under the experimental manipulations of this study, phenotypic plasticity in S. pistillata appears to be related to branch level of organization, whereas colony traits are controlled by predetermined genetic architectural rules. Each level of organization undergoes its own mode of astogeny. However, depending on the original ramet structure, the spherical 3-D colonial architecture in this species is orchestrated and assembled by both developmental trajectories at the branch level, and traits at the colony level of organization. In nature, branching colonial forms are often subjected to harsh environmental conditions that cause fragmentation of colony into ramets of different sizes and structures. Developmental traits that are plastic, responding to fragment structure and are not
Rule-based spatial modeling with diffusing, geometrically constrained molecules
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Lohel Maiko
2010-06-01
Full Text Available Abstract Background We suggest a new type of modeling approach for the coarse grained, particle-based spatial simulation of combinatorially complex chemical reaction systems. In our approach molecules possess a location in the reactor as well as an orientation and geometry, while the reactions are carried out according to a list of implicitly specified reaction rules. Because the reaction rules can contain patterns for molecules, a combinatorially complex or even infinitely sized reaction network can be defined. For our implementation (based on LAMMPS, we have chosen an already existing formalism (BioNetGen for the implicit specification of the reaction network. This compatibility allows to import existing models easily, i.e., only additional geometry data files have to be provided. Results Our simulations show that the obtained dynamics can be fundamentally different from those simulations that use classical reaction-diffusion approaches like Partial Differential Equations or Gillespie-type spatial stochastic simulation. We show, for example, that the combination of combinatorial complexity and geometric effects leads to the emergence of complex self-assemblies and transportation phenomena happening faster than diffusion (using a model of molecular walkers on microtubules. When the mentioned classical simulation approaches are applied, these aspects of modeled systems cannot be observed without very special treatment. Further more, we show that the geometric information can even change the organizational structure of the reaction system. That is, a set of chemical species that can in principle form a stationary state in a Differential Equation formalism, is potentially unstable when geometry is considered, and vice versa. Conclusions We conclude that our approach provides a new general framework filling a gap in between approaches with no or rigid spatial representation like Partial Differential Equations and specialized coarse-grained spatial
Modeling Periodic Impulsive Effects on Online TV Series Diffusion.
Directory of Open Access Journals (Sweden)
Peihua Fu
Full Text Available Online broadcasting substantially affects the production, distribution, and profit of TV series. In addition, online word-of-mouth significantly affects the diffusion of TV series. Because on-demand streaming rates are the most important factor that influences the earnings of online video suppliers, streaming statistics and forecasting trends are valuable. In this paper, we investigate the effects of periodic impulsive stimulation and pre-launch promotion on on-demand streaming dynamics. We consider imbalanced audience feverish distribution using an impulsive susceptible-infected-removed(SIR-like model. In addition, we perform a correlation analysis of online buzz volume based on Baidu Index data.We propose a PI-SIR model to evolve audience dynamics and translate them into on-demand streaming fluctuations, which can be observed and comprehended by online video suppliers. Six South Korean TV series datasets are used to test the model. We develop a coarse-to-fine two-step fitting scheme to estimate the model parameters, first by fitting inter-period accumulation and then by fitting inner-period feverish distribution.We find that audience members display similar viewing habits. That is, they seek new episodes every update day but fade away. This outcome means that impulsive intensity plays a crucial role in on-demand streaming diffusion. In addition, the initial audience size and online buzz are significant factors. On-demand streaming fluctuation is highly correlated with online buzz fluctuation.To stimulate audience attention and interpersonal diffusion, it is worthwhile to invest in promotion near update days. Strong pre-launch promotion is also a good marketing tool to improve overall performance. It is not advisable for online video providers to promote several popular TV series on the same update day. Inter-period accumulation is a feasible forecasting tool to predict the future trend of the on-demand streaming amount. The buzz in public
Modeling Periodic Impulsive Effects on Online TV Series Diffusion.
Fu, Peihua; Zhu, Anding; Fang, Qiwen; Wang, Xi
Online broadcasting substantially affects the production, distribution, and profit of TV series. In addition, online word-of-mouth significantly affects the diffusion of TV series. Because on-demand streaming rates are the most important factor that influences the earnings of online video suppliers, streaming statistics and forecasting trends are valuable. In this paper, we investigate the effects of periodic impulsive stimulation and pre-launch promotion on on-demand streaming dynamics. We consider imbalanced audience feverish distribution using an impulsive susceptible-infected-removed(SIR)-like model. In addition, we perform a correlation analysis of online buzz volume based on Baidu Index data. We propose a PI-SIR model to evolve audience dynamics and translate them into on-demand streaming fluctuations, which can be observed and comprehended by online video suppliers. Six South Korean TV series datasets are used to test the model. We develop a coarse-to-fine two-step fitting scheme to estimate the model parameters, first by fitting inter-period accumulation and then by fitting inner-period feverish distribution. We find that audience members display similar viewing habits. That is, they seek new episodes every update day but fade away. This outcome means that impulsive intensity plays a crucial role in on-demand streaming diffusion. In addition, the initial audience size and online buzz are significant factors. On-demand streaming fluctuation is highly correlated with online buzz fluctuation. To stimulate audience attention and interpersonal diffusion, it is worthwhile to invest in promotion near update days. Strong pre-launch promotion is also a good marketing tool to improve overall performance. It is not advisable for online video providers to promote several popular TV series on the same update day. Inter-period accumulation is a feasible forecasting tool to predict the future trend of the on-demand streaming amount. The buzz in public social communities
Directory of Open Access Journals (Sweden)
Timo Friedrich
2012-03-01
Analysis of zebrafish mutants that demonstrate abnormal locomotive behavior can elucidate the molecular requirements for neural network function and provide new models of human disease. Here, we show that zebrafish quetschkommode (que mutant larvae exhibit a progressive locomotor defect that culminates in unusual nose-to-tail compressions and an inability to swim. Correspondingly, extracellular peripheral nerve recordings show that que mutants demonstrate abnormal locomotor output to the axial muscles used for swimming. Using positional cloning and candidate gene analysis, we reveal that a point mutation disrupts the gene encoding dihydrolipoamide branched-chain transacylase E2 (Dbt, a component of a mitochondrial enzyme complex, to generate the que phenotype. In humans, mutation of the DBT gene causes maple syrup urine disease (MSUD, a disorder of branched-chain amino acid metabolism that can result in mental retardation, severe dystonia, profound neurological damage and death. que mutants harbor abnormal amino acid levels, similar to MSUD patients and consistent with an error in branched-chain amino acid metabolism. que mutants also contain markedly reduced levels of the neurotransmitter glutamate within the brain and spinal cord, which probably contributes to their abnormal spinal cord locomotor output and aberrant motility behavior, a trait that probably represents severe dystonia in larval zebrafish. Taken together, these data illustrate how defects in branched-chain amino acid metabolism can disrupt nervous system development and/or function, and establish zebrafish que mutants as a model to better understand MSUD.
Diffuse ultrasonic backscatter using a multi-Gaussian beam model.
Li, Xiongbing; Song, Yongfeng; Arguelles, Andrea P; Turner, Joseph A
2017-07-01
Diffuse ultrasonic backscatter is widely used to evaluate microstructural parameters of heterogeneous materials. Recent singly scattered response (SSR) models utilize a single-Gaussian beam (SGB) assumption which is expected to have limitations. Following a similar formalism, a model is presented using a multi-Gaussian beam (MGB) assumption to characterize the transducer beam for longitudinal-to-longitudinal scattering at normal incidence through an interface with arbitrary curvature. First, the Wigner transform of the transducer field is defined using conjugate double-layer MGB expressions. The theoretical analysis shows that ten groups of Gaussian beams are sufficient for convergence. Compared with the SGB-SSR curve, the shape of MGB-SSR curve is positive skewed. Differences between the MGB-SSR model and the SGB-SSR model are quantified and shown to be complex functions of frequency, sample curvature, transducer parameters, and focal depth in the material. Finally, both models are used to fit experimental spatial variance data from a 304 stainless steel pipe with planar, convex, and concave surfaces. The results show that the MGB-SSR has some characteristics suggesting a better fit to the experiments. However, both models result in grain size estimates within the uncertainty of the optical microscopy suggesting that the SGB is sufficient for normal incidence pulse-echo measurements.
W. Tu (Weichao); G.S. Cunningham; Y. Chen; M.G. Henderson; E. Camporeale (Enrico); G.D. Reeves (Geoffrey)
2013-01-01
textabstractAs a response to the Geospace Environment Modeling (GEM) “Global Radiation Belt Modeling Challenge,” a 3D diffusion model is used to simulate the radiation belt electron dynamics during two intervals of the Combined Release and Radiation Effects Satellite (CRRES) mission, 15 August to 15
A massively parallel exponential integrator for advection-diffusion models
Martínez, A.; Bergamaschi, L.; Caliari, M.; Vianello, M.
2009-09-01
This work considers the Real Leja Points Method (ReLPM), [M. Caliari, M. Vianello, L. Bergamaschi, Interpolating discrete advection-diffusion propagators at spectral Leja sequences, J. Comput. Appl. Math. 172 (2004) 79-99], for the exponential integration of large-scale sparse systems of ODEs, generated by Finite Element or Finite Difference discretizations of 3-D advection-diffusion models. We present an efficient parallel implementation of ReLPM for polynomial interpolation of the matrix exponential propagators and , [phi](z)=(exp(z)-1)/z. A scalability analysis of the most important computational kernel inside the code, the parallel sparse matrix-vector product, has been performed, as well as an experimental study of the communication overhead. As a result of this study an optimized parallel sparse matrix-vector product routine has been implemented. The resulting code shows good scaling behavior even when using more than one thousand processors. The numerical results presented on a number of very large test cases gives experimental evidence that ReLPM is a reliable and efficient tool for the simulation of complex hydrodynamic processes on parallel architectures.
Analytical model of diffuse reflectance spectrum of skin tissue
Energy Technology Data Exchange (ETDEWEB)
Lisenko, S A; Kugeiko, M M; Firago, V A [Belarusian State University, Minsk (Belarus); Sobchuk, A N [B.I. Stepanov Institute of Physics, National Academy of Sciences of Belarus, Minsk (Belarus)
2014-01-31
We have derived simple analytical expressions that enable highly accurate calculation of diffusely reflected light signals of skin in the spectral range from 450 to 800 nm at a distance from the region of delivery of exciting radiation. The expressions, taking into account the dependence of the detected signals on the refractive index, transport scattering coefficient, absorption coefficient and anisotropy factor of the medium, have been obtained in the approximation of a two-layer medium model (epidermis and dermis) for the same parameters of light scattering but different absorption coefficients of layers. Numerical experiments on the retrieval of the skin biophysical parameters from the diffuse reflectance spectra simulated by the Monte Carlo method show that commercially available fibre-optic spectrophotometers with a fixed distance between the radiation source and detector can reliably determine the concentration of bilirubin, oxy- and deoxyhaemoglobin in the dermis tissues and the tissue structure parameter characterising the size of its effective scatterers. We present the examples of quantitative analysis of the experimental data, confirming the correctness of estimates of biophysical parameters of skin using the obtained analytical expressions. (biophotonics)
Postural control model interpretation of stabilogram diffusion analysis
Peterka, R. J.
2000-01-01
Collins and De Luca [Collins JJ. De Luca CJ (1993) Exp Brain Res 95: 308-318] introduced a new method known as stabilogram diffusion analysis that provides a quantitative statistical measure of the apparently random variations of center-of-pressure (COP) trajectories recorded during quiet upright stance in humans. This analysis generates a stabilogram diffusion function (SDF) that summarizes the mean square COP displacement as a function of the time interval between COP comparisons. SDFs have a characteristic two-part form that suggests the presence of two different control regimes: a short-term open-loop control behavior and a longer-term closed-loop behavior. This paper demonstrates that a very simple closed-loop control model of upright stance can generate realistic SDFs. The model consists of an inverted pendulum body with torque applied at the ankle joint. This torque includes a random disturbance torque and a control torque. The control torque is a function of the deviation (error signal) between the desired upright body position and the actual body position, and is generated in proportion to the error signal, the derivative of the error signal, and the integral of the error signal [i.e. a proportional, integral and derivative (PID) neural controller]. The control torque is applied with a time delay representing conduction, processing, and muscle activation delays. Variations in the PID parameters and the time delay generate variations in SDFs that mimic real experimental SDFs. This model analysis allows one to interpret experimentally observed changes in SDFs in terms of variations in neural controller and time delay parameters rather than in terms of open-loop versus closed-loop behavior.
BF{sub 3} PIII modeling: Implantation, amorphisation and diffusion
Energy Technology Data Exchange (ETDEWEB)
Essa, Z.; Cristiano, F.; Spiegel, Y.; Boulenc, P.; Qiu, Y.; Quillec, M.; Taleb, N.; Burenkov, A.; Hackenberg, M.; Bedel-Pereira, E.; Mortet, V.; Torregrosa, Frank; Tavernier, C. [STMicroelectronics 850 rue Jean Monnet F-38926 Crolles France and LAAS-CNRS 7 av. du Col. Roche 31077 Toulouse (France); LAAS-CNRS 7 av. du Col. Roche 31077 Toulouse (France); IBS av. Gaston Imbert prolongee 13790 Peynier Rousset (France); STMicroelectronics 850 rue Jean Monnet F-38926 Crolles (France); LAAS-CNRS 7 av. du Col. Roche 31077 Toulouse (France); Probion Analysis 37 rue de Fontenay 92220 Bagneux (France); Fraunhofer IISB Schottkystrasse 10, 91058 Erlangen (Germany); LAAS-CNRS 7 av. du Col. Roche 31077 Toulouse (France); IBS av. Gaston Imbert prolongee 13790 Peynier Rousset (France); STMicroelectronics 850 rue Jean Monnet F-38926 Crolles (France)
2012-11-06
In the race for highly doped ultra-shallow junctions (USJs) in complementary metal oxide semi-conductor (CMOS) technologies, plasma immersion ion implantation (PIII) is a promising alternative to traditional beamline implantation. Currently, no commercial technology computer aided design (TCAD) process simulator allows modeling the complete USJ fabrication process by PIII, including as-implanted dopant profiles, damage formation, dopant diffusion and activation. In this work, a full simulation of a p-type BF{sub 3} PIII USJ has been carried out. In order to investigate the various physical phenomena mentioned above, process conditions included a high energy/high dose case (10 kV, 5 Multiplication-Sign 10{sup 15} cm{sup -2}), specifically designed to increase damage formation, as well as more technology relevant implant conditions (0.5 kV) for comparison. All implanted samples were annealed at different temperatures and times. As implanted profiles for both boron and fluorine in BF{sub 3} implants were modeled and compared to Secondary Ion Mass Spectrometry (SIMS) measurements. Amorphous/crystalline (a/c) interface depths were measured by transmission electron microscopy (TEM) and successfully simulated. Diffused profiles simulations agreed with SIMS data at low thermal budgets. A boron peak behind the a/c interface was observed in all annealed SIMS profiles for the 10 kV case, indicating boron trapping from EOR defects in this region even after high thermal budgets. TEM measurements on the annealed samples showed an end of range (EOR) defects survival behind the a/c interface, including large dislocation loops (DLs) lying on (001) plane parallel to the surface. In the last part of this work, activation simulations were compared to Hall measurements and confirmed the need to develop a (001) large BICs model.
BF3 PIII modeling: Implantation, amorphisation and diffusion
Essa, Z.; Cristiano, F.; Spiegel, Y.; Boulenc, P.; Qiu, Y.; Quillec, M.; Taleb, N.; Burenkov, A.; Hackenberg, M.; Bedel-Pereira, E.; Mortet, V.; Torregrosa, Frank; Tavernier, C.
2012-11-01
In the race for highly doped ultra-shallow junctions (USJs) in complementary metal oxide semi-conductor (CMOS) technologies, plasma immersion ion implantation (PIII) is a promising alternative to traditional beamline implantation. Currently, no commercial technology computer aided design (TCAD) process simulator allows modeling the complete USJ fabrication process by PIII, including as-implanted dopant profiles, damage formation, dopant diffusion and activation. In this work, a full simulation of a p-type BF3 PIII USJ has been carried out. In order to investigate the various physical phenomena mentioned above, process conditions included a high energy/high dose case (10 kV, 5×1015 cm-2), specifically designed to increase damage formation, as well as more technology relevant implant conditions (0.5 kV) for comparison. All implanted samples were annealed at different temperatures and times. As implanted profiles for both boron and fluorine in BF3 implants were modeled and compared to Secondary Ion Mass Spectrometry (SIMS) measurements. Amorphous/crystalline (a/c) interface depths were measured by transmission electron microscopy (TEM) and successfully simulated. Diffused profiles simulations agreed with SIMS data at low thermal budgets. A boron peak behind the a/c interface was observed in all annealed SIMS profiles for the 10 kV case, indicating boron trapping from EOR defects in this region even after high thermal budgets. TEM measurements on the annealed samples showed an end of range (EOR) defects survival behind the a/c interface, including large dislocation loops (DLs) lying on (001) plane parallel to the surface. In the last part of this work, activation simulations were compared to Hall measurements and confirmed the need to develop a (001) large BICs model.
The Effectiveness Analysis of Waiting Processes in the Different Branches of a Bank by Queue Model
Directory of Open Access Journals (Sweden)
Abdullah ÖZÇİL
2015-06-01
Full Text Available Despite the appreciable increase in the number of bank branches every year, nowadays queues for services don’t decrease and even become parts of our daily lives. By minimizing waiting processes the least, increasing customer satisfaction should be one of branch managers’ main goals. A quick and also customer oriented service with high quality is the most important factor for customer loyalty. In this study, Queueing theory, one of Operation Research techniques, is handled and in application, the data are obtained related to waiting in queue of customer in six different branches of two banks operating in Denizli and then they are analyzed by Queueing theory and also calculated the average effectiveness of the system. The study’s data are obtained by six branches of two banks called as A1, A2, A3, B1, B2 and B3. At the end of study it is presented to the company some advices that can bring benefits to the staff and customers. In this study, Queueing theory, one of Operation Research techniques, is handled and in application, the data are obtained related to waiting in queue of customer in three different branches of a bank operating in Denizli and then they are analyzed by Queueing theory and also calculated the average effectiveness of the system. The study’s data are obtained by three branches of the bank called A1, A2 and A3. At last it is presented to the company some advices that can bring more benefits to the staff and clients.
Mass loss of stars on the asymptotic giant branch. Mechanisms, models and measurements
Höfner, Susanne; Olofsson, Hans
2018-01-01
As low- and intermediate-mass stars reach the asymptotic giant branch (AGB), they have developed into intriguing and complex objects that are major players in the cosmic gas/dust cycle. At this stage, their appearance and evolution are strongly affected by a range of dynamical processes. Large-scale convective flows bring newly-formed chemical elements to the stellar surface and, together with pulsations, they trigger shock waves in the extended stellar atmosphere. There, massive outflows of gas and dust have their origin, which enrich the interstellar medium and, eventually, lead to a transformation of the cool luminous giants into white dwarfs. Dust grains forming in the upper atmospheric layers play a critical role in the wind acceleration process, by scattering and absorbing stellar photons and transferring their outward-directed momentum to the surrounding gas through collisions. Recent progress in high-angular-resolution instrumentation, from the visual to the radio regime, is leading to valuable new insights into the complex dynamical atmospheres of AGB stars and their wind-forming regions. Observations are revealing asymmetries and inhomogeneities in the photospheric and dust-forming layers which vary on time-scales of months, as well as more long-lived large-scale structures in the circumstellar envelopes. High-angular-resolution observations indicate at what distances from the stars dust condensation occurs, and they give information on the chemical composition and sizes of dust grains in the close vicinity of cool giants. These are essential constraints for building realistic models of wind acceleration and developing a predictive theory of mass loss for AGB stars, which is a crucial ingredient of stellar and galactic chemical evolution models. At present, it is still not fully possible to model all these phenomena from first principles, and to predict the mass-loss rate based on fundamental stellar parameters only. However, much progress has been made
Individual differences in emotion word processing: A diffusion model analysis.
Mueller, Christina J; Kuchinke, Lars
2016-06-01
The exploratory study investigated individual differences in implicit processing of emotional words in a lexical decision task. A processing advantage for positive words was observed, and differences between happy and fear-related words in response times were predicted by individual differences in specific variables of emotion processing: Whereas more pronounced goal-directed behavior was related to a specific slowdown in processing of fear-related words, the rate of spontaneous eye blinks (indexing brain dopamine levels) was associated with a processing advantage of happy words. Estimating diffusion model parameters revealed that the drift rate (rate of information accumulation) captures unique variance of processing differences between happy and fear-related words, with highest drift rates observed for happy words. Overall emotion recognition ability predicted individual differences in drift rates between happy and fear-related words. The findings emphasize that a significant amount of variance in emotion processing is explained by individual differences in behavioral data.
Technology diffusion in energy-economy models: The case of Danish vintage models
DEFF Research Database (Denmark)
Klinge Jacobsen, Henrik
2000-01-01
the costs of greenhouse gas mitigation. This paper examines the effect on aggregate energy efficiency of using technological vintage models to describe technology diffusion. The focus is on short- to medium-term issues. Three different models of Danish energy supply and demand are used to illustrate......Technological progress is an important issue in long-term energy demand projections and in environmental analyses. Different assumptions on technological progress and diffusion of new technologies are among the reasons for diverging results obtained using bottom-up and top-down models for analyzing...... the consequences of the vintage modelling approach. The fluctuating utilization rates for power capacity in Denmark are found to have a significant impact on average fuel efficiencies. Diffusion of electric appliances is linked to economic activity and saturation levels for each appliance. In the sector...
Stochastic fire-diffuse-fire model with realistic cluster dynamics
Calabrese, Ana; Fraiman, Daniel; Zysman, Daniel; Ponce Dawson, Silvina
2010-09-01
Living organisms use waves that propagate through excitable media to transport information. Ca2+ waves are a paradigmatic example of this type of processes. A large hierarchy of Ca2+ signals that range from localized release events to global waves has been observed in Xenopus laevis oocytes. In these cells, Ca2+ release occurs trough inositol 1,4,5-trisphosphate receptors (IP3Rs) which are organized in clusters of channels located on the membrane of the endoplasmic reticulum. In this article we construct a stochastic model for a cluster of IP3R ’s that replicates the experimental observations reported in [D. Fraiman , Biophys. J. 90, 3897 (2006)10.1529/biophysj.105.075911]. We then couple this phenomenological cluster model with a reaction-diffusion equation, so as to have a discrete stochastic model for calcium dynamics. The model we propose describes the transition regimes between isolated release and steadily propagating waves as the IP3 concentration is increased.
On the Bass diffusion theory, empirical models and out-of-sample forecasting
Ph.H.B.F. Franses (Philip Hans)
2003-01-01
textabstractThe Bass (1969) diffusion theory often guides the construction of forecasting models for new product diffusion. To match the model with data, one needs to put forward a statistical model. This paper compares four empirical versions of the model, where two of these explicitly incorporate
Coherent branching feature bisimulation
Directory of Open Access Journals (Sweden)
Tessa Belder
2015-04-01
Full Text Available Progress in the behavioral analysis of software product lines at the family level benefits from further development of the underlying semantical theory. Here, we propose a behavioral equivalence for feature transition systems (FTS generalizing branching bisimulation for labeled transition systems (LTS. We prove that branching feature bisimulation for an FTS of a family of products coincides with branching bisimulation for the LTS projection of each the individual products. For a restricted notion of coherent branching feature bisimulation we furthermore present a minimization algorithm and show its correctness. Although the minimization problem for coherent branching feature bisimulation is shown to be intractable, application of the algorithm in the setting of a small case study results in a significant speed-up of model checking of behavioral properties.
Modelling thermal radiation in buoyant turbulent diffusion flames
Consalvi, J. L.; Demarco, R.; Fuentes, A.
2012-10-01
This work focuses on the numerical modelling of radiative heat transfer in laboratory-scale buoyant turbulent diffusion flames. Spectral gas and soot radiation is modelled by using the Full-Spectrum Correlated-k (FSCK) method. Turbulence-Radiation Interactions (TRI) are taken into account by considering the Optically-Thin Fluctuation Approximation (OTFA), the resulting time-averaged Radiative Transfer Equation (RTE) being solved by the Finite Volume Method (FVM). Emission TRIs and the mean absorption coefficient are then closed by using a presumed probability density function (pdf) of the mixture fraction. The mean gas flow field is modelled by the Favre-averaged Navier-Stokes (FANS) equation set closed by a buoyancy-modified k-ɛ model with algebraic stress/flux models (ASM/AFM), the Steady Laminar Flamelet (SLF) model coupled with a presumed pdf approach to account for Turbulence-Chemistry Interactions, and an acetylene-based semi-empirical two-equation soot model. Two sets of experimental pool fire data are used for validation: propane pool fires 0.3 m in diameter with Heat Release Rates (HRR) of 15, 22 and 37 kW and methane pool fires 0.38 m in diameter with HRRs of 34 and 176 kW. Predicted flame structures, radiant fractions, and radiative heat fluxes on surrounding surfaces are found in satisfactory agreement with available experimental data across all the flames. In addition further computations indicate that, for the present flames, the gray approximation can be applied for soot with a minor influence on the results, resulting in a substantial gain in Computer Processing Unit (CPU) time when the FSCK is used to treat gas radiation.
Dhulekar, Nimit; Ray, Shayoni; Yuan, Daniel; Baskaran, Abhirami; Oztan, Basak; Larsen, Melinda; Yener, Bülent
2016-01-01
This study considers the problem of describing and predicting cleft formation during the early stages of branching morphogenesis in mouse submandibular salivary glands (SMG) under the influence of varied concentrations of epidermal growth factors (EGF). Given a time-lapse video of a growing SMG, first we build a descriptive model that captures the underlying biological process and quantifies the ground truth. Tissue-scale (global) and morphological features related to regions of interest (local features) are used to characterize the biological ground truth. Second, we devise a predictive growth model that simulates EGF-modulated branching morphogenesis using a dynamic graph algorithm, which is driven by biological parameters such as EGF concentration, mitosis rate, and cleft progression rate. Given the initial configuration of the SMG, the evolution of the dynamic graph predicts the cleft formation, while maintaining the local structural characteristics of the SMG. We determined that higher EGF concentrations cause the formation of higher number of buds and comparatively shallow cleft depths. Third, we compared the prediction accuracy of our model to the Glazier-Graner-Hogeweg (GGH) model, an on-lattice Monte-Carlo simulation model, under a specific energy function parameter set that allows new rounds of de novo cleft formation. The results demonstrate that the dynamic graph model yields comparable simulations of gland growth to that of the GGH model with a significantly lower computational complexity. Fourth, we enhanced this model to predict the SMG morphology for an EGF concentration without the assistance of a ground truth time-lapse biological video data; this is a substantial benefit of our model over other similar models that are guided and terminated by information regarding the final SMG morphology. Hence, our model is suitable for testing the impact of different biological parameters involved with the process of branching morphogenesis in silico, while
Unsteady Crack Motion and Branching in a Phase-Field Model of Brittle Fracture
Karma, Alain; Lobkovsky, Alexander E.
2004-06-01
Crack propagation is studied numerically using a continuum phase-field approach to modeIII brittle fracture. The results shed light on the physics that controls the speed of accelerating cracks and the characteristic branching instability at a fraction of the wave speed.
A Viral Product Diffusion Model to Forecast the Market Performance of Products
Directory of Open Access Journals (Sweden)
Ping Jiang
2017-01-01
Full Text Available To investigate the diffusion of products in the market, this paper proposes a viral product diffusion model using an epidemiological approach. This model presents the process of product diffusion through the dynamics of human behaviors. Based on the stability theory of Ordinary Differential Equations, we demonstrate the conditions under which a product in the market persists or dies out eventually. Next, we use Google data to validate the model. Fitting results illustrate that the viral product diffusion model not only depicts the steady growth process of products, but also describes the whole diffusion process during which the products increase at the initial stage and then gradually decrease and sometimes even exhibit multiple peaks. This shows that the viral product diffusion model can be used to forecast the developing tendency of products in the market through early behavior of these products. Moreover, our model also provides useful insights on how to design effective marketing strategies via social contagions.
Agent-based Modeling Automated: Data-driven Generation of Innovation Diffusion Models
Jensen, T.; Chappin, E.J.L.
2016-01-01
Simulation modeling is useful to gain insights into driving mechanisms of diffusion of innovations. This study aims to introduce automation to make identification of such mechanisms with agent-based simulation modeling less costly in time and labor. We present a novel automation procedure in which
Modelling of sand transport under wave-generated sheet flows with a RANS diffusion model
Hassan, Wael; Ribberink, Jan S.
2010-01-01
A 1DV-RANS diffusion model is used to study sand transport processes in oscillatory flat-bed/sheet flow conditions. The central aim is the verification of the model with laboratory data and to identify processes controlling the magnitude and direction (‘onshore’/‘offshore’) of the net time-averaged
The dynamics of multimodal integration: The averaging diffusion model.
Turner, Brandon M; Gao, Juan; Koenig, Scott; Palfy, Dylan; L McClelland, James
2017-12-01
We combine extant theories of evidence accumulation and multi-modal integration to develop an integrated framework for modeling multimodal integration as a process that unfolds in real time. Many studies have formulated sensory processing as a dynamic process where noisy samples of evidence are accumulated until a decision is made. However, these studies are often limited to a single sensory modality. Studies of multimodal stimulus integration have focused on how best to combine different sources of information to elicit a judgment. These studies are often limited to a single time point, typically after the integration process has occurred. We address these limitations by combining the two approaches. Experimentally, we present data that allow us to study the time course of evidence accumulation within each of the visual and auditory domains as well as in a bimodal condition. Theoretically, we develop a new Averaging Diffusion Model in which the decision variable is the mean rather than the sum of evidence samples and use it as a base for comparing three alternative models of multimodal integration, allowing us to assess the optimality of this integration. The outcome reveals rich individual differences in multimodal integration: while some subjects' data are consistent with adaptive optimal integration, reweighting sources of evidence as their relative reliability changes during evidence integration, others exhibit patterns inconsistent with optimality.
DEFF Research Database (Denmark)
Vester, Steen
2015-01-01
We study the complexity of the model-checking problem for the branching-time logic CTL ∗ and the alternating-time temporal logics ATL/ATL ∗ in one-counter processes and one-counter games respectively. The complexity is determined for all three logics when integer weights are input in unary (non...... when we add quantitative constraints that can compare the current value of the counter with a constant....
Elizabeth N. Mihalik; Norm S. Levine; Devendra M. Amatya
2008-01-01
Chapel Branch Creek (CBC), located within the Town of Santee adjacent to Lake Marion in Orangeburg County, SC, is listed on the SC 2004 303(d) list of impaired waterbodies due to elevated levels of nitrogen (N), phosphorus (P), chlorophyll-a, and pH. In this study, using a GIS-based approach, two runoff modeling methods, the Rational and SCS-CN methods, have been...
Ahmad, Noraini; Ramsch, Roland; Llinàs, Meritxell; Solans, Conxita; Hashim, Rauzah; Tajuddin, Hairul Anuar
2014-03-01
The effect of incorporating new nonionic glycolipid surfactants on the properties of a model water/nonionic surfactant/oil nano-emulsion system was investigated using branched-chain alkyl glycosides: 2-hexyldecyl-β(/α)-D-glucoside (2-HDG) and 2-hexyldecyl-β(/α)-D-maltoside (2-HDM), whose structures are closely related to glycero-glycolipids. Both 2-HDG and 2-HDM have an identical hydrophobic chain (C16), but the former consists a monosaccharide glucose head group, in contrast to the latter which has a disaccharide maltose unit. Consequently, their hydrophilic-lipophilic balance (HLB) is different. The results obtained have shown that these branched-chain alkyl glycosides affect differently the stability of the nano-emulsions. Compared to the model nano-emulsion, the presence of 2-HDG reduces the oil droplet size, whereas 2-HDM modify the properties of the model nano-emulsion system in terms of its droplet size and storage time stability at high temperature. These nano-emulsions have been proven capable of encapsulating ketoprofen, showing a fast release of almost 100% in 24h. Thus, both synthetically prepared branched-chain alkyl glycosides with mono- and disaccharide sugar head groups are suitable as nano-emulsion stabilizing agents and as drug delivery systems in the future. Copyright © 2013 Elsevier B.V. All rights reserved.
Diffusion Modeling: A Study of the Diffusion of “Jatropha Curcas ...
African Journals Online (AJOL)
Diffusion of innovation is a versatile social science theory which typically represents an interface of communication and change. Its goal is to attempt to understand the range of influences to which consumers of new ideas, products, or systems are exposed to at a given point in time in a given social environment. The present ...
Diffusion in Liquids : Equilibrium Molecular Simulations and Predictive Engineering Models
Liu, X.
2013-01-01
The aim of this thesis is to study multicomponent diffusion in liquids using Molecular Dynamics (MD) simulations. Diffusion plays an important role in mass transport processes. In binary systems, mass transfer processes have been studied extensively using both experiments and molecular simulations.
What cognitive processes drive response biases? A diffusion model analysis
Directory of Open Access Journals (Sweden)
Fabio P. Leite
2011-10-01
Full Text Available We used a diffusion model to examine the effects of response-bias manipulations on response time (RT and accuracy data collected in two experiments involving a two-choice decision making task. We asked 18 subjects to respond ``low'' or ``high'' to the number of asterisks in a 10x10 grid, based on an experimenter-determined decision cutoff. In the model, evidence is accumulated until either a ``low'' or ``high'' decision criterion is reached, and this, in turn, initiates a response. We performed two experiments with four experimental conditions. In conditions 1 and 2, the decision cutoff between low and high judgments was fixed at 50. In condition 1, we manipulated the frequency with which low- and high-stimuli were presented. In condition 2, we used payoff structures that mimicked the frequency manipulation. We found that manipulating stimulus frequency resulted in a larger effect on RT and accuracy than did manipulating payoff structure. In the model, we found that manipulating stimulus frequency produced greater changes in the starting point of the evidence accumulation process than did manipulating payoff structure. In conditions 3 and 4, we set the decision cutoff at 40, 50, or 60 (Experiment 1 and at 45 or 55 (Experiment 2. In condition 3, there was an equal number of low- and high-stimuli, whereas in condition 4 there were unequal proportions of low- and high-stimuli. The model analyses showed that starting-point changes accounted for biases produced by changes in stimulus proportions, whereas evidence biases accounted for changes in the decision cutoff.
Synchronized stability in a reaction–diffusion neural network model
Energy Technology Data Exchange (ETDEWEB)
Wang, Ling; Zhao, Hongyong, E-mail: hongyongz@126.com
2014-11-14
The reaction–diffusion neural network consisting of a pair of identical tri-neuron loops is considered. We present detailed discussions about the synchronized stability and Hopf bifurcation, deducing the non-trivial role that delay plays in different locations. The corresponding numerical simulations are used to illustrate the effectiveness of the obtained results. In addition, the numerical results about the effects of diffusion reveal that diffusion may speed up the tendency to synchronization and induce the synchronized equilibrium point to be stable. Furthermore, if the parameters are located in appropriate regions, multiple unstability and bistability or unstability and bistability may coexist. - Highlights: • Point to non-trivial role that τ plays in different positions. • Diffusion speeds up the tendency to synchronization. • Diffusion induces the synchronized equilibrium point to be stable. • The coexistence of multiple unstability and bistability or unstability and bistability.
Terleev, V.; Ginevsky, R.; Lazarev, V.; Nikonorov, A.; Togo, I.; Topaj, A.; Moiseev, K.; Abakumov, E.; Melnichuk, A.; Dunaieva, I.
2017-10-01
A mathematical model of the hysteresis of the water-retention capacity of the soil is proposed. The parameters of the model are interpreted within the framework of physical concepts of the structure and capillary properties of soil pores. On the basis of the model, a computer program with an interface that allows for dialogue with the user is developed. The program has some of options: visualization of experimental data; identification of the model parameters with use of measured data by means of an optimizing algorithm; graphical presentation of the hysteresis loop with application of the assigned parameters. Using the program, computational experiments were carried out, which consisted in verifying the identifiability of the model parameters from data on the main branches, and also in testing the ability to predict the scanning branches of the hysteresis loop. For the experiments, literature data on two sandy soils were used. The absence of an “artificial pump effect” is proved. A sufficiently high accuracy of the prediction of the scanning branches of the hysteresis loop has been achieved in comparison with the three models of the precursors. The practical importance of the proposed model and computer program, which is developed on its basis, is to ensure the calculation of precision irrigation rates. The application of such rates in irrigation farming will help to prevent excess moisture from flowing beyond the root layer of the soil and, thus, minimize the unproductive loss of irrigation water and agrochemicals, as well as reduce the risk of groundwater contamination and natural water eutrophication.
Perceptual decision making: Drift-diffusion model is equivalent to a Bayesian model
Directory of Open Access Journals (Sweden)
Sebastian eBitzer
2014-02-01
Full Text Available Behavioural data obtained with perceptual decision making experiments are typically analysed with the drift-diffusion model. This parsimonious model accumulates noisy pieces of evidence towards a decision bound to explain the accuracy and reaction times of subjects. Recently, Bayesian models have been proposed to explain how the brain extracts information from noisy input as typically presented in perceptual decision making tasks. It has long been known that the drift-diffusion model is tightly linked with such functional Bayesian models but the precise relationship of the two mechanisms was never made explicit. Using a Bayesian model, we derived the equations which relate parameter values between these models. In practice we show that this equivalence is useful when fitting multi-subject data. We further show that the Bayesian model suggests different decision variables which all predict equal responses and discuss how these may be discriminated based on neural correlates of accumulated evidence. In addition, we discuss extensions to the Bayesian model which would be difficult to derive for the drift-diffusion model. We suggest that these and other extensions may be highly useful for deriving new experiments which test novel hypotheses.
Perceptual decision making: drift-diffusion model is equivalent to a Bayesian model.
Bitzer, Sebastian; Park, Hame; Blankenburg, Felix; Kiebel, Stefan J
2014-01-01
Behavioral data obtained with perceptual decision making experiments are typically analyzed with the drift-diffusion model. This parsimonious model accumulates noisy pieces of evidence toward a decision bound to explain the accuracy and reaction times of subjects. Recently, Bayesian models have been proposed to explain how the brain extracts information from noisy input as typically presented in perceptual decision making tasks. It has long been known that the drift-diffusion model is tightly linked with such functional Bayesian models but the precise relationship of the two mechanisms was never made explicit. Using a Bayesian model, we derived the equations which relate parameter values between these models. In practice we show that this equivalence is useful when fitting multi-subject data. We further show that the Bayesian model suggests different decision variables which all predict equal responses and discuss how these may be discriminated based on neural correlates of accumulated evidence. In addition, we discuss extensions to the Bayesian model which would be difficult to derive for the drift-diffusion model. We suggest that these and other extensions may be highly useful for deriving new experiments which test novel hypotheses.
Simulating Radiotherapy Effect in High-Grade Glioma by Using Diffusive Modeling and Brain Atlases
Directory of Open Access Journals (Sweden)
Alexandros Roniotis
2012-01-01
Full Text Available Applying diffusive models for simulating the spatiotemporal change of concentration of tumour cells is a modern application of predictive oncology. Diffusive models are used for modelling glioblastoma, the most aggressive type of glioma. This paper presents the results of applying a linear quadratic model for simulating the effects of radiotherapy on an advanced diffusive glioma model. This diffusive model takes into consideration the heterogeneous velocity of glioma in gray and white matter and the anisotropic migration of tumor cells, which is facilitated along white fibers. This work uses normal brain atlases for extracting the proportions of white and gray matter and the diffusion tensors used for anisotropy. The paper also presents the results of applying this glioma model on real clinical datasets.
Developing A Laser Shockwave Model For Characterizing Diffusion Bonded Interfaces
Energy Technology Data Exchange (ETDEWEB)
James A. Smith; Jeffrey M. Lacy; Barry H. Rabin
2014-07-01
12. Other advances in QNDE and related topics: Preferred Session Laser-ultrasonics Developing A Laser Shockwave Model For Characterizing Diffusion Bonded Interfaces 41st Annual Review of Progress in Quantitative Nondestructive Evaluation Conference QNDE Conference July 20-25, 2014 Boise Centre 850 West Front Street Boise, Idaho 83702 James A. Smith, Jeffrey M. Lacy, Barry H. Rabin, Idaho National Laboratory, Idaho Falls, ID ABSTRACT: The US National Nuclear Security Agency has a Global Threat Reduction Initiative (GTRI) which is assigned with reducing the worldwide use of high-enriched uranium (HEU). A salient component of that initiative is the conversion of research reactors from HEU to low enriched uranium (LEU) fuels. An innovative fuel is being developed to replace HEU. The new LEU fuel is based on a monolithic fuel made from a U-Mo alloy foil encapsulated in Al-6061 cladding. In order to complete the fuel qualification process, the laser shock technique is being developed to characterize the clad-clad and fuel-clad interface strengths in fresh and irradiated fuel plates. The Laser Shockwave Technique (LST) is being investigated to characterize interface strength in fuel plates. LST is a non-contact method that uses lasers for the generation and detection of large amplitude acoustic waves to characterize interfaces in nuclear fuel plates. However the deposition of laser energy into the containment layer on specimen’s surface is intractably complex. The shock wave energy is inferred from the velocity on the backside and the depth of the impression left on the surface from the high pressure plasma pulse created by the shock laser. To help quantify the stresses and strengths at the interface, a finite element model is being developed and validated by comparing numerical and experimental results for back face velocities and front face depressions with experimental results. This paper will report on initial efforts to develop a finite element model for laser
A Model for Diffusion and Immobilization of Lithium in SiOC Nanocomposite Anodes
Stein, Peter; Vrankovic, Dragoljub; Graczyk-Zajac, Magdalena; Riedel, Ralf; Xu, Bai-Xiang
2017-09-01
In order to simulate the diffusion of Li ions in SiOC nanocomposites, we developed a reaction-diffusion model for multiphase materials. This model extends existing models for single-phase diffusion through consideration of the ion transport across material interfaces. In each phase, this model regards mobile and immobilized ions together with the irreversible trapping process. The behavior of material interfaces is incorporated using a Butler-Volmer reaction kinetics model. The model is verified using a simple two-phase benchmark on a square domain. Simulations of the coupled diffusion in a random microstructure show a stalling effect, whereby the immobilization process effectively stops the diffusion of mobile ions during the first stages of intercalation.
Fleischer, Robert; Fleischer, Robert; Recksiegel, Stefan
2006-01-01
With the wealth of new data from the B-factories, b -> d penguin decays become available for study, in addition to their b -> s counterparts that have proven an indespensable tool for the exploration of new-physics effects in flavour physics. A prominent example of the b -> d penguin transitions is $\\bar B^0_d \\to K^0 \\bar K^0$. We show that this decay can be charaterized in the Standard Model by a surface in the observable space of the direct and mixing-induced CP asymmetries and the branching ratio. The form of this surface, which is theoretically clean, implies a lower bound for the branching ratio that has recently been confirmed experimentally. If future measurements of the CP asymmetries yield a point away from the SM surface, this would be an interesting signal of new physics. We point out that the hadronic parameters in $\\bar B^0_d \\to K^0 \\bar K^0$ that parameterize the position on the SM surface are related to hadronic parameters in the B -> pi K system. The fact that the branching ratio of $\\bar B^...
Erickson, Richard A.; Eager, Eric A.; Stanton, Jessica C.; Beston, Julie A.; Diffendorfer, James E.; Thogmartin, Wayne E.
2015-01-01
Quantifying the impact of anthropogenic development on local populations is important for conservation biology and wildlife management. However, these local populations are often subject to demographic stochasticity because of their small population size. Traditional modeling efforts such as population projection matrices do not consider this source of variation whereas individual-based models, which include demographic stochasticity, are computationally intense and lack analytical tractability. One compromise between approaches is branching process models because they accommodate demographic stochasticity and are easily calculated. These models are known within some sub-fields of probability and mathematical ecology but are not often applied in conservation biology and applied ecology. We applied branching process models to quantitatively compare and prioritize species locally vulnerable to the development of wind energy facilities. Specifically, we examined species vulnerability using branching process models for four representative species: A cave bat (a long-lived, low fecundity species), a tree bat (short-lived, moderate fecundity species), a grassland songbird (a short-lived, high fecundity species), and an eagle (a long-lived, slow maturation species). Wind turbine-induced mortality has been observed for all of these species types, raising conservation concerns. We simulated different mortality rates from wind farms while calculating local extinction probabilities. The longer-lived species types (e.g., cave bats and eagles) had much more pronounced transitions from low extinction risk to high extinction risk than short-lived species types (e.g., tree bats and grassland songbirds). High-offspring-producing species types had a much greater variability in baseline risk of extinction than the lower-offspring-producing species types. Long-lived species types may appear stable until a critical level of incidental mortality occurs. After this threshold, the risk of
DIFFUSION MODEL OF CREAMY- AND VEGETABLE SPREADS MIXING
Directory of Open Access Journals (Sweden)
A. N. Ostrikov
2015-01-01
Full Text Available Summary .A mathematical model of the process of mixing cream- and vegetable spread was developed. In modeling the diffusion understanding of the nature of the process were used, allowing escape from the apparatus geometry. After turning on the mixer the mixing process begins. Its duration can be determined by the behavior of the tracer particles introduced into the agitated medium in a predetermined quantity through the free liquid surface within a short period of time. If tracer particles have the same density with the surrounding bulk liquid phase, then the path of movement of the particles and the fluid are identical. The degree of homogeneity of the composition can be stirred calculated by the coefficient of variation, which is identified by the local concentrations of tracer particles in the volume of stirred medium. The task of a one-dimensional particle transport in the plane layer of the mixed liquid is solved for their calculation. The calculated ratios obtained allow us to calculate the particle concentration at any point in the volume being mixed at random times. Based on the experiment effective mixing coefficients are identified and relations for their assessment, depending on the Reynolds number of the mixer in the range studied variations of process are offered. Using the time dependence of the variation coefficient characterizing the homogenity of the system being mixed, it is possible to determine the duration of mixing to obtain the product with the desired uniformity and homogeneity of the product under the definition of a predetermined duration of the mixing process. The variation coefficient %, indicating a sufficiently good uniformity of the spread composition was found for the spread №1, being mixed with a stirrer rotating at a speed of n=150 rev / min, and the dimensionless length of the process Fo =0,0935 for obtaining estimated relations. Using the proposed calculation algorithm one can estimate the homogeneity of the
Diffuse Phosphorus Models in the United States and Europe: Their Usages, Scales, and Uncertainties
Radcliffe, D.E.; Freer, J.; Schoumans, O.F.
2009-01-01
Today there are many well-established computer models that are being used at different spatial and temporal scales to describe water, sediment, and P transport from diffuse sources. In this review, we describe how diffuse P models are commonly being used in the United States and Europe, the
Osei, Frank B.; Osei, F.B.; Duker, Alfred A.; Stein, A.
2011-01-01
This study analyses the joint effects of the two transmission routes of cholera on the space-time diffusion dynamics. Statistical models are developed and presented to investigate the transmission network routes of cholera diffusion. A hierarchical Bayesian modelling approach is employed for a joint
A mathematical model in charactering chloride diffusivity in unsaturated cementitious material
Zhang, Y.; Ye, G.; Pecur, I.B.; Baricevic, A.; Stirmer, N; Bjegovic, D.
2017-01-01
In this paper, a new analytic model for predicting chloride diffusivity in unsaturated cementitious materials is developed based on conductivity theory and Nernst-Einstein equation. The model specifies that chloride diffusivity in unsaturated cementitious materials can be mathematically described as
A reaction diffusion model of pattern formation in clustering of adatoms on silicon surfaces
Directory of Open Access Journals (Sweden)
Trilochan Bagarti
2012-12-01
Full Text Available We study a reaction diffusion model which describes the formation of patterns on surfaces having defects. Through this model, the primary goal is to study the growth process of Ge on Si surface. We consider a two species reaction diffusion process where the reacting species are assumed to diffuse on the two dimensional surface with first order interconversion reaction occuring at various defect sites which we call reaction centers. Two models of defects, namely a ring defect and a point defect are considered separately. As reaction centers are assumed to be strongly localized in space, the proposed reaction-diffusion model is found to be exactly solvable. We use Green's function method to study the dynamics of reaction diffusion processes. Further we explore this model through Monte Carlo (MC simulations to study the growth processes in the presence of a large number of defects. The first passage time statistics has been studied numerically.
Diffusion-controlled reactions modeling in Geant4-DNA
Karamitros, M.; Luan, S.; Bernal, M. A.; Allison, J.; Baldacchino, G.; Davidkova, M.; Francis, Z.; Friedland, W.; Ivantchenko, V.; Ivantchenko, A.; Mantero, A.; Nieminem, P.; Santin, G.; Tran, H. N.; Stepan, V.; Incerti, S.
2014-10-01
Context Under irradiation, a biological system undergoes a cascade of chemical reactions that can lead to an alteration of its normal operation. There are different types of radiation and many competing reactions. As a result the kinetics of chemical species is extremely complex. The simulation becomes then a powerful tool which, by describing the basic principles of chemical reactions, can reveal the dynamics of the macroscopic system. To understand the dynamics of biological systems under radiation, since the 80s there have been on-going efforts carried out by several research groups to establish a mechanistic model that consists in describing all the physical, chemical and biological phenomena following the irradiation of single cells. This approach is generally divided into a succession of stages that follow each other in time: (1) the physical stage, where the ionizing particles interact directly with the biological material; (2) the physico-chemical stage, where the targeted molecules release their energy by dissociating, creating new chemical species; (3) the chemical stage, where the new chemical species interact with each other or with the biomolecules; (4) the biological stage, where the repairing mechanisms of the cell come into play. This article focuses on the modeling of the chemical stage. Method This article presents a general method of speeding-up chemical reaction simulations in fluids based on the Smoluchowski equation and Monte-Carlo methods, where all molecules are explicitly simulated and the solvent is treated as a continuum. The model describes diffusion-controlled reactions. This method has been implemented in Geant4-DNA. The keys to the new algorithm include: (1) the combination of a method to compute time steps dynamically with a Brownian bridge process to account for chemical reactions, which avoids costly fixed time step simulations; (2) a k-d tree data structure for quickly locating, for a given molecule, its closest reactants. The
Diffusion-controlled reactions modeling in Geant4-DNA
Energy Technology Data Exchange (ETDEWEB)
Karamitros, M., E-mail: matkara@gmail.com [CNRS, IN2P3, CENBG, UMR 5797, F-33170 Gradignan (France); CNRS, INCIA, UMR 5287, F-33400 Talence (France); Luan, S. [University of New Mexico, Department of Computer Science, Albuquerque, NM (United States); Bernal, M.A. [Instituto de Física Gleb Wataghin, Universidade Estadual de Campinas, SP (Brazil); Allison, J. [Geant4 Associates International Ltd (United Kingdom); Baldacchino, G. [CEA Saclay, IRAMIS, LIDYL, Radiation Physical Chemistry Group, F-91191 Gif sur Yvette Cedex (France); CNRS, UMR3299, SIS2M, F-91191 Gif sur Yvette Cedex (France); Davidkova, M. [Nuclear Physics Institute of the ASCR, Prague (Czech Republic); Francis, Z. [Saint Joseph University, Faculty of Sciences, Department of Physics, Mkalles, Beirut (Lebanon); Friedland, W. [Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Radiation Protection, Ingolstädter Landstr. 1, 85764 Neuherberg (Germany); Ivantchenko, V. [Ecoanalytica, 119899 Moscow (Russian Federation); Geant4 Associates International Ltd (United Kingdom); Ivantchenko, A. [Geant4 Associates International Ltd (United Kingdom); Mantero, A. [SwHaRD s.r.l., via Buccari 9, 16153 Genova (Italy); Nieminem, P.; Santin, G. [ESA-ESTEC, 2200 AG Noordwijk (Netherlands); Tran, H.N. [Division of Nuclear Physics and Faculty of Applied Sciences, Ton Duc Thang University, Tan Phong Ward, District 7, Ho Chi Minh City (Viet Nam); Stepan, V. [CNRS, IN2P3, CENBG, UMR 5797, F-33170 Gradignan (France); Nuclear Physics Institute of the ASCR, Prague (Czech Republic); Incerti, S., E-mail: incerti@cenbg.in2p3.fr [CNRS, IN2P3, CENBG, UMR 5797, F-33170 Gradignan (France)
2014-10-01
Context Under irradiation, a biological system undergoes a cascade of chemical reactions that can lead to an alteration of its normal operation. There are different types of radiation and many competing reactions. As a result the kinetics of chemical species is extremely complex. The simulation becomes then a powerful tool which, by describing the basic principles of chemical reactions, can reveal the dynamics of the macroscopic system. To understand the dynamics of biological systems under radiation, since the 80s there have been on-going efforts carried out by several research groups to establish a mechanistic model that consists in describing all the physical, chemical and biological phenomena following the irradiation of single cells. This approach is generally divided into a succession of stages that follow each other in time: (1) the physical stage, where the ionizing particles interact directly with the biological material; (2) the physico-chemical stage, where the targeted molecules release their energy by dissociating, creating new chemical species; (3) the chemical stage, where the new chemical species interact with each other or with the biomolecules; (4) the biological stage, where the repairing mechanisms of the cell come into play. This article focuses on the modeling of the chemical stage. Method This article presents a general method of speeding-up chemical reaction simulations in fluids based on the Smoluchowski equation and Monte-Carlo methods, where all molecules are explicitly simulated and the solvent is treated as a continuum. The model describes diffusion-controlled reactions. This method has been implemented in Geant4-DNA. The keys to the new algorithm include: (1) the combination of a method to compute time steps dynamically with a Brownian bridge process to account for chemical reactions, which avoids costly fixed time step simulations; (2) a k–d tree data structure for quickly locating, for a given molecule, its closest reactants. The
Branching processes in biology
Kimmel, Marek
2015-01-01
This book provides a theoretical background of branching processes and discusses their biological applications. Branching processes are a well-developed and powerful set of tools in the field of applied probability. The range of applications considered includes molecular biology, cellular biology, human evolution and medicine. The branching processes discussed include Galton-Watson, Markov, Bellman-Harris, Multitype, and General Processes. As an aid to understanding specific examples, two introductory chapters, and two glossaries are included that provide background material in mathematics and in biology. The book will be of interest to scientists who work in quantitative modeling of biological systems, particularly probabilists, mathematical biologists, biostatisticians, cell biologists, molecular biologists, and bioinformaticians. The authors are a mathematician and cell biologist who have collaborated for more than a decade in the field of branching processes in biology for this new edition. This second ex...
An airway tree-shape model for geodesic airway branch labeling
DEFF Research Database (Denmark)
Feragen, Aasa; Lo, Pechin Chien Pau; Gorbunova, Vladlena
2011-01-01
We present a mathematical airway tree-shape framework where airway trees are compared using geodesic distances. The framework consists of a rigorously dened shape space for treelike shapes, endowed with a metric such that the shape space is a geodesic metric space. This means that the distance be...... tree and a set of labeled airway trees are combined with a voting scheme to perform automatic branch labeling of segmented airways from the challenging EXACT'09 test set. In spite of the varying quality of the data, we obtain robust labeling results.......We present a mathematical airway tree-shape framework where airway trees are compared using geodesic distances. The framework consists of a rigorously dened shape space for treelike shapes, endowed with a metric such that the shape space is a geodesic metric space. This means that the distance...... between two tree-shapes can be realized as the length of the geodesic, or shortest deformation, connecting the two shapes. By computing geodesics between airway trees, as well as the corresponding airway deformation, we generate airway branch correspondences. Correspondences between an unlabeled airway...
Martin, Elliot; Shreim, Amer; Paczuski, Maya
2010-01-01
We define an activity-dependent branching ratio that allows comparison of different time series Xt . The branching ratio bx is defined as bx=E[ξx/x] . The random variable ξx is the value of the next signal given that the previous one is equal to x , so ξx={Xt+1∣Xt=x} . If bx>1 , the process is on average supercritical when the signal is equal to x , while if bxefficient market hypothesis.” For stock volumes, solar x-ray flux intensities, and the Bak-Tang-Wiesenfeld (BTW) sandpile model, bx is supercritical for small values of activity and subcritical for the largest ones, indicating a tendency to return to a typical value. For stock volumes this tendency has an approximate power-law behavior. For solar x-ray flux and the BTW model, there is a broad regime of activity where bx≃1 , which we interpret as an indicator of critical behavior. This is true despite different underlying probability distributions for Xt and for ξx . For the BTW model the distribution of ξx is Gaussian, for x sufficiently larger than 1, and its variance grows linearly with x . Hence, the activity in the BTW model obeys a central limit theorem when sampling over past histories. The broad region of activity where bx is close to one disappears once bulk dissipation is introduced in the BTW model—supporting our hypothesis that it is an indicator of criticality.
Ohashi, Hidenori; Tamaki, Takanori; Yamaguchi, Takeo
2011-12-29
Molecular collisions, which are the microscopic origin of molecular diffusive motion, are affected by both the molecular surface area and the distance between molecules. Their product can be regarded as the free space around a penetrant molecule defined as the "shell-like free volume" and can be taken as a characteristic of molecular collisions. On the basis of this notion, a new diffusion theory has been developed. The model can predict molecular diffusivity in polymeric systems using only well-defined single-component parameters of molecular volume, molecular surface area, free volume, and pre-exponential factors. By consideration of the physical description of the model, the actual body moved and which neighbor molecules are collided with are the volume and the surface area of the penetrant molecular core. In the present study, a semiempirical quantum chemical calculation was used to calculate both of these parameters. The model and the newly developed parameters offer fairly good predictive ability. © 2011 American Chemical Society
DEFF Research Database (Denmark)
Vestergaard-Poulsen, Peter; Hansen, Brian; Østergaard, Leif
2007-01-01
PURPOSE: To understand the diffusion attenuated MR signal from normal and ischemic brain tissue in order to extract structural and physiological information using mathematical modeling, taking into account the transverse relaxation rates in gray matter. MATERIALS AND METHODS: We fit our diffusion...... compartment. A global optimum was found from a wide range of parameter permutations using cluster computing. We also present simulations of cell swelling and changes of exchange rate and intracellular diffusion as possible cellular mechanisms in ischemia. RESULTS: Our model estimates an extracellular volume...... fraction of 0.19 in accordance with the accepted value from histology. The absolute apparent diffusion coefficient obtained from the model was similar to that of experiments. The model and the experimental results indicate significant differences in diffusion and transverse relaxation between the tissue...
Energy Technology Data Exchange (ETDEWEB)
Telfeyan, Katherine Christina [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Ware, Stuart Douglas [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Reimus, Paul William [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Birdsell, Kay Hanson [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
2017-11-06
Diffusion cell and diffusion wafer experiments were conducted to compare methods for estimating matrix diffusion coefficients in rock core samples from Pahute Mesa at the Nevada Nuclear Security Site (NNSS). A diffusion wafer method, in which a solute diffuses out of a rock matrix that is pre-saturated with water containing the solute, is presented as a simpler alternative to the traditional through-diffusion (diffusion cell) method. Both methods yielded estimates of matrix diffusion coefficients that were within the range of values previously reported for NNSS volcanic rocks. The difference between the estimates of the two methods ranged from 14 to 30%, and there was no systematic high or low bias of one method relative to the other. From a transport modeling perspective, these differences are relatively minor when one considers that other variables (e.g., fracture apertures, fracture spacings) influence matrix diffusion to a greater degree and tend to have greater uncertainty than diffusion coefficients. For the same relative random errors in concentration measurements, the diffusion cell method yields diffusion coefficient estimates that have less uncertainty than the wafer method. However, the wafer method is easier and less costly to implement and yields estimates more quickly, thus allowing a greater number of samples to be analyzed for the same cost and time. Given the relatively good agreement between the methods, and the lack of any apparent bias between the methods, the diffusion wafer method appears to offer advantages over the diffusion cell method if better statistical representation of a given set of rock samples is desired.
Telfeyan, Katherine; Ware, S Doug; Reimus, Paul W; Birdsell, Kay H
2018-02-01
Diffusion cell and diffusion wafer experiments were conducted to compare methods for estimating effective matrix diffusion coefficients in rock core samples from Pahute Mesa at the Nevada Nuclear Security Site (NNSS). A diffusion wafer method, in which a solute diffuses out of a rock matrix that is pre-saturated with water containing the solute, is presented as a simpler alternative to the traditional through-diffusion (diffusion cell) method. Both methods yielded estimates of effective matrix diffusion coefficients that were within the range of values previously reported for NNSS volcanic rocks. The difference between the estimates of the two methods ranged from 14 to 30%, and there was no systematic high or low bias of one method relative to the other. From a transport modeling perspective, these differences are relatively minor when one considers that other variables (e.g., fracture apertures, fracture spacings) influence matrix diffusion to a greater degree and tend to have greater uncertainty than effective matrix diffusion coefficients. For the same relative random errors in concentration measurements, the diffusion cell method yields effective matrix diffusion coefficient estimates that have less uncertainty than the wafer method. However, the wafer method is easier and less costly to implement and yields estimates more quickly, thus allowing a greater number of samples to be analyzed for the same cost and time. Given the relatively good agreement between the methods, and the lack of any apparent bias between the methods, the diffusion wafer method appears to offer advantages over the diffusion cell method if better statistical representation of a given set of rock samples is desired. Copyright © 2018 Elsevier B.V. All rights reserved.
Mendenhall, Jonathan D.
's and other micellization properties for a variety of linear and branched surfactant chemical architectures which are commonly encountered in practice. Single-component surfactant solutions are investigated, in order to clarify the specific contributions of the surfactant head and tail to the free energy of micellization, a quantity which determines the cmc and all other aspects of micellization. First, a molecular-thermodynamic (MT) theory is presented which makes use of bulk-phase thermodynamics and a phenomenological thought process to describe the energetics related to the formation of a micelle from its constituent surfactant monomers. Second, a combined computer-simulation/molecular-thermodynamic (CSMT) framework is discussed which provides a more detailed quantification of the hydrophobic effect using molecular dynamics simulations. A novel computational strategy to identify surfactant head and tail using an iterative dividing surface approach, along with simulated micelle results, is proposed. Force-field development for novel surfactant structures is also discussed. Third, a statistical-thermodynamic, single-chain, mean-field theory for linear and branched tail packing is formulated, which enables quantification of the specific energetic penalties related to confinement and constraint of surfactant tails within micelles. Finally, these theoretical and simulations-based strategies are used to predict the micellization behavior of 55 linear surfactants and 28 branched surfactants. Critical micelle concentration and optimal micelle properties are reported and compared with experiment, demonstrating good agreement across a range of surfactant head and tail types. In particular, the CSMT framework is found to provide improved agreement with experimental cmc's for the branched surfactants considered. (Copies available exclusively from MIT Libraries, libraries.mit.edu/docs - docs mit.edu)
Pattern Formation in a Predator-Prey Model with Both Cross Diffusion and Time Delay
Directory of Open Access Journals (Sweden)
Boli Xie
2014-01-01
Full Text Available A predator-prey model with both cross diffusion and time delay is considered. We give the conditions for emerging Turing instability in detail. Furthermore, we illustrate the spatial patterns via numerical simulations, which show that the model dynamics exhibits a delay and diffusion controlled formation growth not only of spots and stripe-like patterns, but also of the two coexist. The obtained results show that this system has rich dynamics; these patterns show that it is useful for the diffusive predation model with a delay effect to reveal the spatial dynamics in the real model.
A fractional Fokker-Planck model for anomalous diffusion
Energy Technology Data Exchange (ETDEWEB)
Anderson, Johan, E-mail: anderson.johan@gmail.com [Department of Earth and Space Sciences, Chalmers University of Technology, SE-412 96 Göteborg (Sweden); Kim, Eun-jin [Department of Mathematics and Statistics, University of Sheffield, Hicks Building, Hounsfield Road, Sheffield S3 7RH (United Kingdom); Moradi, Sara [Ecole Polytechnique, CNRS UMR7648, LPP, F-91128 Palaiseau (France)
2014-12-15
In this paper, we present a study of anomalous diffusion using a Fokker-Planck description with fractional velocity derivatives. The distribution functions are found using numerical means for varying degree of fractionality of the stable Lévy distribution. The statistical properties of the distribution functions are assessed by a generalized normalized expectation measure and entropy in terms of Tsallis statistical mechanics. We find that the ratio of the generalized entropy and expectation is increasing with decreasing fractionality towards the well known so-called sub-diffusive domain, indicating a self-organising behavior.
Directory of Open Access Journals (Sweden)
Eitzinger Bernhard
2014-07-01
Full Text Available The diffusion capacity of cigarette paper has been reported to be an important parameter in relation to the self-extinguishment of cigarettes and also in relation to carbon monoxide yields. Although the diffusion capacity is routinely measured and instruments for this measurement have been available for several years, differences between measured values obtained on the same paper sample but on different instruments or in different laboratories may be substantial and may make it difficult to use these values, for example, as a basis for paper specifications. Among several reasons, deviations of temperature and pressure from standard conditions, especially within the measurement chamber of the instrument, may contribute to the high variation in diffusion capacity data. Deviations of temperature and pressure will have an influence on the gas flow rates, the diffusion processes inside the measurement chamber and consequently the measured CO2 concentration. Generally, the diffusion capacity is determined from a mathematical model, which describes the diffusion processes inside the measurement chamber. Such models provide the CO2 concentration in the outflow gas for a given diffusion capacity. For practical applications the inverse model is needed, that is, the diffusion capacity shall be determined from a measured CO2 concentration. Often such an inverse model is approximated by a polynomial, which, however, is only valid for standard temperature and pressure. It is shown that relative approximation errors from such polynomials, even without temperature and pressure deviations, cannot always be neglected and it is proposed to eliminate such errors by direct inversion of the model with a comparably simple iterative method. A model which includes temperature and pressure effects is described and the effects of temperature and pressure deviations on the diffusion capacity are theoretically estimated by comparing the output of a model with and without
Wu, Hao; Noé, Frank
2011-03-01
Diffusion processes are relevant for a variety of phenomena in the natural sciences, including diffusion of cells or biomolecules within cells, diffusion of molecules on a membrane or surface, and diffusion of a molecular conformation within a complex energy landscape. Many experimental tools exist now to track such diffusive motions in single cells or molecules, including high-resolution light microscopy, optical tweezers, fluorescence quenching, and Förster resonance energy transfer (FRET). Experimental observations are most often indirect and incomplete: (1) They do not directly reveal the potential or diffusion constants that govern the diffusion process, (2) they have limited time and space resolution, and (3) the highest-resolution experiments do not track the motion directly but rather probe it stochastically by recording single events, such as photons, whose properties depend on the state of the system under investigation. Here, we propose a general Bayesian framework to model diffusion processes with nonlinear drift based on incomplete observations as generated by various types of experiments. A maximum penalized likelihood estimator is given as well as a Gibbs sampling method that allows to estimate the trajectories that have caused the measurement, the nonlinear drift or potential function and the noise or diffusion matrices, as well as uncertainty estimates of these properties. The approach is illustrated on numerical simulations of FRET experiments where it is shown that trajectories, potentials, and diffusion constants can be efficiently and reliably estimated even in cases with little statistics or nonequilibrium measurement conditions.
Diffusion of PAH in potato and carrot slices and application for a potato model
DEFF Research Database (Denmark)
Trapp, Stefan; Cammarano, A.; Capri, E.
2007-01-01
A method for quantifying the effect of medium composition on the diffusive mass transfer of hydrophobic organic chemicals through thin layers was applied to plant tissue. The method employs two silicone disks, one serving as source and one as sink for a series of PAHs diffusing through thin layers...... of water, potato tissue, and carrot tissue. Naphthalene, phenanthrene, anthracene, and fluoranthene served as model substances. Their transfer from source to sink disk was measured by HPLC to determine a velocity rate constant proportional to the diffusive conductivity. The diffusive flux through the plant...
Directory of Open Access Journals (Sweden)
Luisa Malaguti
2011-01-01
Full Text Available The paper deals with a degenerate reaction-diffusion equation, including aggregative movements and convective terms. The model also incorporates a real parameter causing the change from a purely diffusive to a diffusive-aggregative and to a purely aggregative regime. Existence and qualitative properties of traveling wave solutions are investigated, and estimates of their threshold speeds are furnished. Further, the continuous dependence of the threshold wave speed and of the wave profiles on a real parameter is studied, both when the process maintains its diffusion-aggregation nature and when it switches from it to another regime.
Comparison Of Diffuse Solar Radiation Models Using Data For ...
African Journals Online (AJOL)
Measurements of global solar radiation and sunshine duration data during the period from 1984 to 1999 were supplied by IITA (International Institute of Tropical Agriculture) at Onne. The data were used to establish empirical relationships that would connect the daily monthly average diffuse irradiation with both relative ...
The diffusion-buffer phenomenon in a mathematical model of biology
Energy Technology Data Exchange (ETDEWEB)
Kolesov, Andrei Yu [Yaroslavl Demidov State University (Russian Federation); Rozov, Nikolai Kh [M.V. Lomonosov Moscow State University, Moscow (Russian Federation)
1998-10-31
We consider the Neumann problem for partial differential-difference equations with diffusion that models a predator-prey problem. Using infinite-dimensional normalization, we establish the diffusion-buffer phenomenon, which means that the system can have any number of stable spatially inhomogeneous cycles if its parameters are properly chosen.
Study of the mathematical model for absorption and diffusion in ultra-napkins
Directory of Open Access Journals (Sweden)
Paola Mannucci
1995-11-01
Full Text Available We anlyse a mathematical model for absorption and diffusion of a fluid in ultra-napkins. We consider a diffusion equation coupled with an ordinary differential equation, subjected to a discontinuous Neumann boundary condition.We prove the existence and the uniqueness of a regular solution which is continuous up to the boundary.
Fitting the CDO correlation skew: a tractable structural jump-diffusion model
DEFF Research Database (Denmark)
Willemann, Søren
2007-01-01
We extend a well-known structural jump-diffusion model for credit risk to handle both correlations through diffusion of asset values and common jumps in asset value. Through a simplifying assumption on the default timing and efficient numerical techniques, we develop a semi-analytic framework all...
Rotational diffusion model of orientational enhancement in AC field biased photorefractive polymers
DEFF Research Database (Denmark)
Pedersen, T.G.; Jespersen, K.G.; Johansen, P.M.
2001-01-01
The response of photorefractive (PR) polymers subject to AC field biasing is analyzed within the space-charge field formalism. The frequency dependence of orientational enhancement is taken into account using a rotational diffusion model for the angular distribution of chromophores. The possibili...... for simultaneous utilization of AC and orientational enhancement techniques in polymers is discussed for different values of the rotational diffusion time....
Liang, Yingjie; Ye, Allen Q.; Chen, Wen; Gatto, Rodolfo G.; Colon-Perez, Luis; Mareci, Thomas H.; Magin, Richard L.
2016-10-01
Non-Gaussian (anomalous) diffusion is wide spread in biological tissues where its effects modulate chemical reactions and membrane transport. When viewed using magnetic resonance imaging (MRI), anomalous diffusion is characterized by a persistent or 'long tail' behavior in the decay of the diffusion signal. Recent MRI studies have used the fractional derivative to describe diffusion dynamics in normal and post-mortem tissue by connecting the order of the derivative with changes in tissue composition, structure and complexity. In this study we consider an alternative approach by introducing fractal time and space derivatives into Fick's second law of diffusion. This provides a more natural way to link sub-voxel tissue composition with the observed MRI diffusion signal decay following the application of a diffusion-sensitive pulse sequence. Unlike previous studies using fractional order derivatives, here the fractal derivative order is directly connected to the Hausdorff fractal dimension of the diffusion trajectory. The result is a simpler, computationally faster, and more direct way to incorporate tissue complexity and microstructure into the diffusional dynamics. Furthermore, the results are readily expressed in terms of spectral entropy, which provides a quantitative measure of the overall complexity of the heterogeneous and multi-scale structure of biological tissues. As an example, we apply this new model for the characterization of diffusion in fixed samples of the mouse brain. These results are compared with those obtained using the mono-exponential, the stretched exponential, the fractional derivative, and the diffusion kurtosis models. Overall, we find that the order of the fractal time derivative, the diffusion coefficient, and the spectral entropy are potential biomarkers to differentiate between the microstructure of white and gray matter. In addition, we note that the fractal derivative model has practical advantages over the existing models from the
Rigol, Montserrat; Solanes, Núria; Fernandez-Armenta, Juan; Silva, Etelvino; Doltra, Adelina; Duchateau, Nicolas; Barcelo, Aina; Gabrielli, Luigi; Bijnens, Bart; Berruezo, Antonio; Brugada, Josep; Sitges, Marta
2013-08-01
Animal models that mimic human electrical and mechanical dyssynchrony often associated with chronic heart failure would provide an essential tool to investigate factors influencing response to cardiac resynchronization therapy. A standardized closed-chest porcine model of left bundle branch block (LBBB) was developed using 16 pigs. Radiofrequency applications were performed to induce LBBB, which was confirmed by QRS widening, a surface electrocardiogram pattern concordant with LBBB, and a prolonged activation time from endocardial. Echocardiography confirmed abnormal motion of the septum, which was not present at the baseline echocardiogram. High susceptibility of pigs to ventricular fibrillation during the endocardial ablation was overcome by applying high-rate pacing during radiofrequency applications. This is the first study to devise a closed-chest porcine model of LBBB that closely reproduces abnormalities found in patients with electrical and mechanical cardiac dyssynchrony, and provides a useful tool to investigate the basic mechanisms underlying cardiac resynchronization therapy benefits in heart failure.
Diffusion within the cytoplasm: a mesoscale model of interacting macromolecules.
Trovato, Fabio; Tozzini, Valentina
2014-12-02
Recent experiments carried out in the dense cytoplasm of living cells have highlighted the importance of proteome composition and nonspecific intermolecular interactions in regulating macromolecule diffusion and organization. Despite this, the dependence of diffusion-interaction on physicochemical properties such as the degree of poly-dispersity and the balance between steric repulsion and nonspecific attraction among macromolecules was not systematically addressed. In this work, we study the problem of diffusion-interaction in the bacterial cytoplasm, combining theory and experimental data to build a minimal coarse-grained representation of the cytoplasm, which also includes, for the first time to our knowledge, the nucleoid. With stochastic molecular-dynamics simulations of a virtual cytoplasm we are able to track the single biomolecule motion, sizing from 3 to 80 nm, on submillisecond-long trajectories. We demonstrate that the size dependence of diffusion coefficients, anomalous exponents, and the effective viscosity experienced by biomolecules in the cytoplasm is fine-tuned by the intermolecular interactions. Accounting only for excluded volume in these potentials gives a weaker size-dependence than that expected from experimental data. On the contrary, adding nonspecific attraction in the range of 1-10 thermal energy units produces a stronger variation of the transport properties at growing biopolymer sizes. Normal and anomalous diffusive regimes emerge straightforwardly from the combination of high macromolecular concentration, poly-dispersity, stochasticity, and weak nonspecific interactions. As a result, small biopolymers experience a viscous cytoplasm, while the motion of big ones is jammed because the entanglements produced by the network of interactions and the entropic effects caused by poly-dispersity are stronger. Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.
Diffusion Forecasting Model with Basis Functions from QR-Decomposition
Harlim, John; Yang, Haizhao
2017-12-01
The diffusion forecasting is a nonparametric approach that provably solves the Fokker-Planck PDE corresponding to Itô diffusion without knowing the underlying equation. The key idea of this method is to approximate the solution of the Fokker-Planck equation with a discrete representation of the shift (Koopman) operator on a set of basis functions generated via the diffusion maps algorithm. While the choice of these basis functions is provably optimal under appropriate conditions, computing these basis functions is quite expensive since it requires the eigendecomposition of an N× N diffusion matrix, where N denotes the data size and could be very large. For large-scale forecasting problems, only a few leading eigenvectors are computationally achievable. To overcome this computational bottleneck, a new set of basis functions constructed by orthonormalizing selected columns of the diffusion matrix and its leading eigenvectors is proposed. This computation can be carried out efficiently via the unpivoted Householder QR factorization. The efficiency and effectiveness of the proposed algorithm will be shown in both deterministically chaotic and stochastic dynamical systems; in the former case, the superiority of the proposed basis functions over purely eigenvectors is significant, while in the latter case forecasting accuracy is improved relative to using a purely small number of eigenvectors. Supporting arguments will be provided on three- and six-dimensional chaotic ODEs, a three-dimensional SDE that mimics turbulent systems, and also on the two spatial modes associated with the boreal winter Madden-Julian Oscillation obtained from applying the Nonlinear Laplacian Spectral Analysis on the measured Outgoing Longwave Radiation.
Pattern Formation in Predator-Prey Model with Delay and Cross Diffusion
Directory of Open Access Journals (Sweden)
Xinze Lian
2013-01-01
Full Text Available We consider the effect of time delay and cross diffusion on the dynamics of a modified Leslie-Gower predator-prey model incorporating a prey refuge. Based on the stability analysis, we demonstrate that delayed feedback may generate Hopf and Turing instability under some conditions, resulting in spatial patterns. One of the most interesting findings is that the model exhibits complex pattern replication: the model dynamics exhibits a delay and diffusion controlled formation growth not only to spots, stripes, and holes, but also to spiral pattern self-replication. The results indicate that time delay and cross diffusion play important roles in pattern formation.
Boyer, D.; Romo-Cruz, J. C. R.
2014-10-01
Motivated by studies on the recurrent properties of animal and human mobility, we introduce a path-dependent random-walk model with long-range memory for which not only the mean-square displacement (MSD) but also the propagator can be obtained exactly in the asymptotic limit. The model consists of a random walker on a lattice, which, at a constant rate, stochastically relocates at a site occupied at some earlier time. This time in the past is chosen randomly according to a memory kernel, whose temporal decay can be varied via an exponent parameter. In the weakly non-Markovian regime, memory reduces the diffusion coefficient from the bare value. When the mean backward jump in time diverges, the diffusion coefficient vanishes and a transition to an anomalous subdiffusive regime occurs. Paradoxically, at the transition, the process is an anticorrelated Lévy flight. Although in the subdiffusive regime the model exhibits some features of the continuous time random walk with infinite mean waiting time, it belongs to another universality class. If memory is very long-ranged, a second transition takes place to a regime characterized by a logarithmic growth of the MSD with time. In this case the process is asymptotically Gaussian and effectively described as a scaled Brownian motion with a diffusion coefficient decaying as 1 /t .
Model selection for high b-value diffusion-weighted MRI of the prostate.
Mazaheri, Yousef; Hötker, Andreas M; Shukla-Dave, Amita; Akin, Oguz; Hricak, Hedvig
2018-02-01
To assess the abilities of the standard mono-exponential (ME), bi-exponential (BE), diffusion kurtosis (DK) and stretched exponential (SE) models to characterize diffusion signal in malignant and prostatic tissues and determine which of the four models best characterizes these tissues on a per-voxel basis. This institutional-review-board-approved, HIPAA-compliant, retrospective study included 55 patients (median age, 61years; range, 42-77years) with untreated, biopsy-proven PCa who underwent endorectal coil MRI at 3-Tesla, diffusion-weighted MRI acquired at eight b-values from 0 to 2000s/mm2. Estimated parameters were apparent diffusion coefficent (ME model); diffusion coefficients for the fast (Dfast) and slow (Dslow) components and fraction of fast component, ffast (BE model); diffusion coefficient D, and kurtosis K (DK model); distributed diffusion coefficient DDC and α for (SE model). For one region-of-interest (ROI) in PZ and another in PCa in each patient, the corrected Akaike information criterion (AICc) and the Akaike weight (w) were calculated for each voxel. Based on AICc and w, all non-monoexponential models outperformed the ME model in PZ and PCa. The DK model in PZ and SE model in PCa ROIs best fit the greatest average percentages of voxels (39% and 43%, respectively) and had the highest mean w (35±16×10-2 and 41±22×10-2, respectively). DK and SE models best fit DWI data in PZ and PCa, and non-ME models consistently outperformed the ME model. Voxel-wise mapping of the preferential model demonstrated that the vast majority of voxels in either tissue type were best fit with one of the non-monoexponential models. At the given SNR levels, the maximum b-value of 2000s/mm2 is not sufficiently high to identify the preferred non-monoexponential model. Copyright © 2017 Elsevier Inc. All rights reserved.
Energy Technology Data Exchange (ETDEWEB)
Wang, Zhaohui; Benson, George C.; Lu, Benjamin C.-Y. E-mail: lu@eng.uottawa.ca
2004-01-01
Measurements of excess molar enthalpies at the temperature 298.15 K in a flow microcalorimeter are reported for the five binary mixtures formed by mixing 1-hexene with the branched alkanes: 2-methylpentane, 3-methylpentane, 2,2-dimethylbutane, 2,3-dimethylbutane, and 2,2,4-trimethylpentane. Smooth Redlich-Kister representations of the results are described. It was found that the Liebermann-Fried model also provided good representations of the results.
Hann-Ming Henry Juang; Ching-Teng Lee; Yongxin Zhang; Yucheng Song; Ming-Chin Wu; Yi-Leng Chen; Kevin Kodama; Shyh-Chin Chen
2005-01-01
The National Centers for Environmental Prediction regional spectral model and mesoscale spectral model (NCEP RSM/MSM) use a spectral computation on perturbation. The perturbation is defined as a deviation between RSM/MSM forecast value and their outer model or analysis value on model sigma-coordinate surfaces. The horizontal diffusion used in the models applies...
Gaussian and Affine Approximation of Stochastic Diffusion Models for Interest and Mortality Rates
Directory of Open Access Journals (Sweden)
Marcus C. Christiansen
2013-10-01
Full Text Available In the actuarial literature, it has become common practice to model future capital returns and mortality rates stochastically in order to capture market risk and forecasting risk. Although interest rates often should and mortality rates always have to be non-negative, many authors use stochastic diffusion models with an affine drift term and additive noise. As a result, the diffusion process is Gaussian and, thus, analytically tractable, but negative values occur with positive probability. The argument is that the class of Gaussian diffusions would be a good approximation of the real future development. We challenge that reasoning and study the asymptotics of diffusion processes with affine drift and a general noise term with corresponding diffusion processes with an affine drift term and an affine noise term or additive noise. Our study helps to quantify the error that is made by approximating diffusive interest and mortality rate models with Gaussian diffusions and affine diffusions. In particular, we discuss forward interest and forward mortality rates and the error that approximations cause on the valuation of life insurance claims.
Application of the Sea-Level Affecting Marshes Model (SLAMM 6) to Big Branch Marsh NWR
US Fish and Wildlife Service, Department of the Interior — Model SummaryChanges in tidal marsh area and habitat type in response to sea-level rise were modeled using the Sea Level Affecting Marshes Model (SLAMM 6) that...
Generalized Density-Corrected Model for Gas Diffusivity in Variably Saturated Soils
DEFF Research Database (Denmark)
Chamindu, Deepagoda; Møldrup, Per; Schjønning, Per
2011-01-01
models. The GDC model was further extended to describe two-region (bimodal) soils and could describe and predict Dp/Do well for both different soil aggregate size fractions and variably compacted volcanic ash soils. A possible use of the new GDC model is engineering applications such as the design......Accurate predictions of the soil-gas diffusivity (Dp/Do, where Dp is the soil-gas diffusion coefficient and Do is the diffusion coefficient in free air) from easily measureable parameters like air-filled porosity (ε) and soil total porosity (φ) are valuable when predicting soil aeration...... and the emission of greenhouse gases and gaseous-phase contaminants from soils. Soil type (texture) and soil density (compaction) are two key factors controlling gas diffusivity in soils. We extended a recently presented density-corrected Dp(ε)/Do model by letting both model parameters (α and β) be interdependent...
The water-induced linear reduction gas diffusivity model extended to three pore regions
DEFF Research Database (Denmark)
Chamindu, Deepagoda; De Jonge, Lis Wollesen; Kawamoto, Ken
2015-01-01
gas diffusivity from moist to dry conditions across differently structured porous media, including narrow soil size fractions, perforated plastic blocks, fractured limestone, peaty soils, aggregated volcanic ash soils, and particulate substrates for Earth- or space-based applications. The new Cip......An existing gas diffusivity model developed originally for sieved, repacked soils was extended to characterize gas diffusion in differently structured soils and functional pore networks. A gas diffusivity-derived pore connectivity index was used as a measure of soil structure development....... Characterization of soil functional pore structure is an essential prerequisite to understand key gas transport processes in variably saturated soils in relation to soil ecosystems, climate, and environmental services. In this study, the water-induced linear reduction (WLR) soil gas diffusivity model originally...
Collision and diffusion in microwave breakdown of nitrogen gas in and around microgaps
Directory of Open Access Journals (Sweden)
J. D. Campbell
2014-01-01
Full Text Available The microwave induced breakdown of N2 gas in microgaps was modeled using the collision frequency between electrons and neutral molecules and the effective electric field concept. Low pressure breakdown at the threshold electric field occurs outside the gap, but at high pressures it is found to occur inside the microgap with a large threshold breakdown electric field corresponding to a very large electron oscillation amplitude. Three distinct pressure regimes are apparent in the microgap breakdown: a low pressure multipactor branch, a mid-pressure Paschen branch, both of which occur in the space outside the microgap, and a high pressure diffusion-drift branch, which occurs inside the microgap. The Paschen and diffusion-drift branches are divided by a sharp transition and each separately fits the collision frequency model. There is evidence that considerable electron loss to the microgap faces accompanies the diffusion-drift branch in microgaps.
Time-Dependent Diffusion MRI in Cancer: Tissue Modeling and Applications
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Olivier Reynaud
2017-11-01
Full Text Available In diffusion weighted imaging (DWI, the apparent diffusion coefficient (ADC has been recognized as a useful and sensitive surrogate for cell density, paving the way for non-invasive tumor staging, and characterization of treatment efficacy in cancer. However, microstructural parameters, such as cell size, density and/or compartmental diffusivities affect diffusion in various fashions, making of conventional DWI a sensitive but non-specific probe into changes happening at cellular level. Alternatively, tissue complexity can be probed and quantified using the time dependence of diffusion metrics, sometimes also referred to as temporal diffusion spectroscopy when only using oscillating diffusion gradients. Time-dependent diffusion (TDD is emerging as a strong candidate for specific and non-invasive tumor characterization. Despite the lack of a general analytical solution for all diffusion times/frequencies, TDD can be probed in various regimes where systems simplify in order to extract relevant information about tissue microstructure. The fundamentals of TDD are first reviewed (a in the short time regime, disentangling structural and diffusive tissue properties, and (b near the tortuosity limit, assuming weakly heterogeneous media near infinitely long diffusion times. Focusing on cell bodies (as opposed to neuronal tracts, a simple but realistic model for intracellular diffusion can offer precious insight on diffusion inside biological systems, at all times. Based on this approach, the main three geometrical models implemented so far (IMPULSED, POMACE, VERDICT are reviewed. Their suitability to quantify cell size, intra- and extracellular spaces (ICS and ECS and diffusivities are assessed. The proper modeling of tissue membrane permeability—hardly a newcomer in the field, but lacking applications—and its impact on microstructural estimates are also considered. After discussing general issues with tissue modeling and microstructural parameter
Modeling of Diffusive Convective and Electromechanical Processes in PEM fuel cells
DEFF Research Database (Denmark)
Bang, Mads
and chemical species. Since analytical solutions to these three dimensional convections diffusion problems can rarely be obtained, the CFX code makes use of a finite volume discretization and numerical techniques, in order to obtain a solution. The model developed solves the convective and diffusive transport...... of the gaseous phase in the fuel cell and allows prediction of the concentration of the species present. A special feature of the approach developed is a method that allows detailed modelling and prediction of electrode kinetics. The transport of electrons in the gas diffusion layer and catalyst layer, as well....... The proposed model makes it possible to predict the effect of geometrical and material properties on fuel cells performance, which means that the model can predict how the gas diffusion layer (GDL) and catalyst layers physical properties affects the distribution of current density, and how this affects...
Pattern Formation in a Cross-Diffusive Holling-Tanner Model
Directory of Open Access Journals (Sweden)
Weiming Wang
2012-01-01
Full Text Available We present a theoretical analysis of the processes of pattern formation that involves organisms distribution and their interaction of spatially distributed population with self- as well as cross-diffusion in a Holling-Tanner predator-prey model; the sufficient conditions for the Turing instability with zero-flux boundary conditions are obtained; Hopf and Turing bifurcation in a spatial domain is presented, too. Furthermore, we present novel numerical evidence of time evolution of patterns controlled by self- as well as cross-diffusion in the model, and find that the model dynamics exhibits a cross-diffusion controlled formation growth not only to spots, but also to strips, holes, and stripes-spots replication. And the methods and results in the present paper may be useful for the research of the pattern formation in the cross-diffusive model.
A Functional Model for Teaching Osmosis-Diffusion to Biology Students
Olsen, Richard W.; Petry, Douglas E.
1976-01-01
Described is a maternal-fetal model, operated by the student, to teach osmosis-diffusion to biology students. Included are materials needed, assembly instructions, and student operating procedures. (SL)
Specifying theories of developmental dyslexia: a diffusion model analysis of word recognition
Zeguers, M.H.T.; Snellings, P.; Tijms, J.; Weeda, W.D.; Tamboer, P.; Bexkens, A.; Huizenga, H.M.
2011-01-01
The nature of word recognition difficulties in developmental dyslexia is still a topic of controversy. We investigated the contribution of phonological processing deficits and uncertainty to the word recognition difficulties of dyslexic children by mathematical diffusion modeling of visual and
Wang, T K; Wan, M Y; Ko, F H; Tseng, C L
2001-05-01
The radioactive tracer technique was applied to investigate the out-diffusion of the transition metals (Cu, Fe and Co) from deep ultraviolet (DUV) photoresist into underlying substrate. Two important process parameters, viz., baking temperatures and substrate types (i.e., bare silicon, polysilicon, silicon oxide and silicon nitride), were evaluated. Results indicate that the out-diffusion of Co is insignificant, irrespective of the substrate type and baking temperature. The out-diffusion of Cu is significant for substrates of bare silicon and polysilicon but not for silicon oxide and nitride; for Fe, the story is reversed. The substrate type appears to strongly affect the diffusion, while the baking temperature does not. Also, the effect of solvent evaporation was found to play an important role in impurity diffusion. Using the method of numerical analysis, a diffusion profile was depicted in this work to describe the out-diffusion of metallic impurities from photoresist layer under various baking conditions. In addition, the effectiveness of various wet-cleaning recipes in removing metallic impurities such as Cu, Fe and Co was also studied using the radioactive tracer technique. Among the six cleaning solutions studied, SC2 and SPM are the most effective in impurity removal. An out-diffusion cleaning model was first proposed to describe the cleaning process. A new cleaning coefficient, h(T), was suggested to explain the cleaning effect. The cleaning model could explain the tracer results.
Diffusion of PAH in potato and carrot slices and application for a potato model.
Trapp, Stefan; Cammarano, Anita; Capri, Ettore; Reichenberg, Fredrik; Mayer, Philipp
2007-05-01
A method for quantifying the effect of medium composition on the diffusive mass transfer of hydrophobic organic chemicals through thin layers was applied to plant tissue. The method employs two silicone disks, one serving as source and one as sink for a series of PAHs diffusing through thin layers of water, potato tissue, and carrot tissue. Naphthalene, phenanthrene, anthracene, and fluoranthene served as model substances. Their transfer from source to sink disk was measured by HPLC to determine a velocity rate constant proportional to the diffusive conductivity. The diffusive flux through the plant tissue was modeled using Fick's first law of diffusion. Both the experimental results and the model suggest that mass transfer through plant tissue occurs predominantly through pore water and that, therefore, the mass transfer ratio between plant tissue and water is independent of the hydrophobicity of the chemical. The findings of this study provide a convenient method to estimate the diffusion of nonvolatile organic chemicals through various plant materials. The application to a radial diffusion model suggests that "growth dilution" rendersthe concentration of highly hydrophobic chemicals in potatoes below their equilibrium partitioning level. This is in agreement with field results for the bioconcentration of PAHs in potatoes.
Woo, Jiyoung; Chen, Hsinchun
2016-01-01
As social media has become more prevalent, its influence on business, politics, and society has become significant. Due to easy access and interaction between large numbers of users, information diffuses in an epidemic style on the web. Understanding the mechanisms of information diffusion through these new publication methods is important for political and marketing purposes. Among social media, web forums, where people in online communities disseminate and receive information, provide a good environment for examining information diffusion. In this paper, we model topic diffusion in web forums using the epidemiology model, the susceptible-infected-recovered (SIR) model, frequently used in previous research to analyze both disease outbreaks and knowledge diffusion. The model was evaluated on a large longitudinal dataset from the web forum of a major retail company and from a general political discussion forum. The fitting results showed that the SIR model is a plausible model to describe the diffusion process of a topic. This research shows that epidemic models can expand their application areas to topic discussion on the web, particularly social media such as web forums.
Li, Bo; Zhao, Yanxiang
2013-01-01
Central in a variational implicit-solvent description of biomolecular solvation is an effective free-energy functional of the solute atomic positions and the solute-solvent interface (i.e., the dielectric boundary). The free-energy functional couples together the solute molecular mechanical interaction energy, the solute-solvent interfacial energy, the solute-solvent van der Waals interaction energy, and the electrostatic energy. In recent years, the sharp-interface version of the variational implicit-solvent model has been developed and used for numerical computations of molecular solvation. In this work, we propose a diffuse-interface version of the variational implicit-solvent model with solute molecular mechanics. We also analyze both the sharp-interface and diffuse-interface models. We prove the existence of free-energy minimizers and obtain their bounds. We also prove the convergence of the diffuse-interface model to the sharp-interface model in the sense of Γ-convergence. We further discuss properties of sharp-interface free-energy minimizers, the boundary conditions and the coupling of the Poisson-Boltzmann equation in the diffuse-interface model, and the convergence of forces from diffuse-interface to sharp-interface descriptions. Our analysis relies on the previous works on the problem of minimizing surface areas and on our observations on the coupling between solute molecular mechanical interactions with the continuum solvent. Our studies justify rigorously the self consistency of the proposed diffuse-interface variational models of implicit solvation.
Branching dynamics of viral information spreading
Iribarren, José Luis; Moro, Esteban
2011-10-01
Despite its importance for rumors or innovations propagation, peer-to-peer collaboration, social networking, or marketing, the dynamics of information spreading is not well understood. Since the diffusion depends on the heterogeneous patterns of human behavior and is driven by the participants’ decisions, its propagation dynamics shows surprising properties not explained by traditional epidemic or contagion models. Here we present a detailed analysis of our study of real viral marketing campaigns where tracking the propagation of a controlled message allowed us to analyze the structure and dynamics of a diffusion graph involving over 31 000 individuals. We found that information spreading displays a non-Markovian branching dynamics that can be modeled by a two-step Bellman-Harris branching process that generalizes the static models known in the literature and incorporates the high variability of human behavior. It explains accurately all the features of information propagation under the “tipping point” and can be used for prediction and management of viral information spreading processes.
National Oceanic and Atmospheric Administration, Department of Commerce — This dataset represents sediment size predictions from a sediment spatial model developed for the New York offshore spatial planning area. The model also includes...
National Oceanic and Atmospheric Administration, Department of Commerce — This dataset represents depth predictions from a bathymetric model developed for the New York offshore spatial planning area. The model also includes...
A qualitative model for aggregation and diffusion of β-amyloid in Alzheimer's disease.
Achdou, Yves; Franchi, Bruno; Marcello, Norina; Tesi, Maria Carla
2013-12-01
In this paper we present a mathematical model for the aggregation and diffusion of Aβ amyloid in the brain affected by Alzheimer's disease, at the early stage of the disease. The model is based on a classical discrete Smoluchowski aggregation equation modified to take diffusion into account. We also describe a numerical scheme and discuss the results of the simulations in the light of the recent biomedical literature.
Efficient simulation of diffusion-based choice RT models on CPU and GPU.
Verdonck, Stijn; Meers, Kristof; Tuerlinckx, Francis
2016-03-01
In this paper, we present software for the efficient simulation of a broad class of linear and nonlinear diffusion models for choice RT, using either CPU or graphical processing unit (GPU) technology. The software is readily accessible from the popular scripting languages MATLAB and R (both 64-bit). The speed obtained on a single high-end GPU is comparable to that of a small CPU cluster, bringing standard statistical inference of complex diffusion models to the desktop platform.
Prediction of the reverberation time in high absorbent room using a modified diffusion model
BILLON, A; PICAUT, J; SAKOUT, A
2008-01-01
A modification of the diffusion model's boundary condition, based on the Eyring absorption coefficient, to account for high walls absorption is proposed. Numerical comparisons are carried out for three geometrical configurations (a proportionate room, a corridor and a flat enclosure). Comparisons with the statistical theory and a ray-tracing software show that the modified boundary condition increases the accuracy of the diffusion model in term of reverberation time in all the simulated confi...
A Multi-Branched Model of the Cardiovascular System: Application to G- Research
1993-01-01
holistic model, which i. still nontrivial, is now less of a problem. The model reported here is basically an extension of two models: Avolio [1] and Jaron [2...approach. Our approach here is more conventional. METHODOLOGY As our model is an extension of Jaron’s (2] using Avolio’s arterial tree (1], we refer readers...possibility into account, we assume that, when the transmural pressure becomes negative and a venous segment experiences collapse, that the flow resistance in
Directory of Open Access Journals (Sweden)
Tetsuya Sakashita
Full Text Available BACKGROUND: Clonogenicity gives important information about the cellular reproductive potential following ionizing irradiation, but an abortive colony that fails to continue to grow remains poorly characterized. It was recently reported that the fraction of abortive colonies increases with increasing dose. Thus, we set out to investigate the production kinetics of abortive colonies using a model of branching processes. METHODOLOGY/PRINCIPAL FINDINGS: We firstly plotted the experimentally determined colony size distribution of abortive colonies in irradiated normal human fibroblasts, and found the linear relationship on the log-linear or log-log plot. By applying the simple model of branching processes to the linear relationship, we found the persistent reproductive cell death (RCD over several generations following irradiation. To verify the estimated probability of RCD, abortive colony size distribution (≤ 15 cells and the surviving fraction were simulated by the Monte Carlo computational approach for colony expansion. Parameters estimated from the log-log fit demonstrated the good performance in both simulations than those from the log-linear fit. Radiation-induced RCD, i.e. excess probability, lasted over 16 generations and mainly consisted of two components in the early (<3 generations and late phases. Intriguingly, the survival curve was sensitive to the excess probability over 5 generations, whereas abortive colony size distribution was robust against it. These results suggest that, whereas short-term RCD is critical to the abortive colony size distribution, long-lasting RCD is important for the dose response of the surviving fraction. CONCLUSIONS/SIGNIFICANCE: Our present model provides a single framework for understanding the behavior of primary cell colonies in culture following irradiation.
DEFF Research Database (Denmark)
Andersen, Karsten Brandt; Levinsen, Simon; Svendsen, Winnie Edith
2009-01-01
In this article we present a generalized theoretical model for the continuous separation of particles using the pinched flow fractionation method. So far the theoretical models have not been able to predict the separation of particles without the use of correction factors. In this article we...... present a model which is capable of predicting the separation from first principles. Furthermore we comment on the importance of the incorporation of the finite height of the micro fluidic channels in the models describing the system behavior. We compare our model with the experiment obtained by Seki et...
A diffuse plate boundary model for Indian Ocean tectonics
Wiens, D. A.; Demets, C.; Gordon, R. G.; Stein, S.; Argus, D.
1985-01-01
It is suggested that motion along the virtually aseismic Owen fracture zone is negligible, so that Arabia and India are contained within a single Indo-Arabian plate divided from the Australian plate by a diffuse boundary. The boundary is a zone of concentrated seismicity and deformation commonly characterized as 'intraplate'. The rotation vector of Australia relative to Indo-Arabia is consistent with the seismologically observed 2 cm/yr of left-lateral strike-slip along the Ninetyeast Ridge, north-south compression in the Central Indian Ocean, and the north-south extension near Chagos.
Analysis of a HBV Model with Diffusion and Time Delay
Directory of Open Access Journals (Sweden)
Noé Chan Chí
2012-01-01
Full Text Available This paper discussed a hepatitis B virus infection with delay, spatial diffusion, and standard incidence function. The local stability of equilibrium is obtained via characteristic equations. By using comparison arguments, it is proved that if the basic reproduction number is less than unity, the infection-free equilibrium is globally asymptotically stable. If the basic reproductive number is greater than unity, by means of an iteration technique, sufficiently conditions are obtained for the global asymptotic stability of the infected steady state. Numerical simulations are carried out to illustrate our findings.
Cell scale host-pathogen modeling: another branch in the evolution of constraint-based methods.
Jamshidi, Neema; Raghunathan, Anu
2015-01-01
Constraint-based models have become popular methods for systems biology as they enable the integration of complex, disparate datasets in a biologically cohesive framework that also supports the description of biological processes in terms of basic physicochemical constraints and relationships. The scope, scale, and application of genome scale models have grown from single cell bacteria to multi-cellular interaction modeling; host-pathogen modeling represents one of these examples at the current horizon of constraint-based methods. There are now a small number of examples of host-pathogen constraint-based models in the literature, however there has not yet been a definitive description of the methodology required for the functional integration of genome scale models in order to generate simulation capable host-pathogen models. Herein we outline a systematic procedure to produce functional host-pathogen models, highlighting steps which require debugging and iterative revisions in order to successfully build a functional model. The construction of such models will enable the exploration of host-pathogen interactions by leveraging the growing wealth of omic data in order to better understand mechanism of infection and identify novel therapeutic strategies.
CELL SCALE HOST-PATHOGEN MODELING: ANOTHER BRANCH IN THE EVOLUTION OF CONSTRAINT-BASED METHODS
Directory of Open Access Journals (Sweden)
Neema eJamshidi
2015-10-01
Full Text Available Constraint-based models have become popular methods for systems biology as they enable the integration of complex, disparate datasets in a biologically cohesive framework that also supports the description of biological processes in terms of basic physicochemical constraints and relationships. The scope, scale, and application of genome scale models have grown from single cell bacteria to multi-cellular interaction modeling; host-pathogen modeling represents one of these examples at the current horizon of constraint-based methods. There are now a small number of examples of host-pathogen constraint-based models in the literature, however there has not yet been a definitive description of the methodology required for the functional integration of genome scale models in order to generate simulation capable host-pathogen models. Herein we outline a systematic procedure to produce functional host-pathogen models, highlighting steps which require debugging and iterative revisions in order to successfully build a functional model. The construction of such models will enable the exploration of host-pathogen interactions by leveraging the growing wealth of omic data in order to better understand mechanism of infection and identify novel therapeutic strategies.
Measurement and modeling of CO2 diffusion coefficient in Saline Aquifer at reservoir conditions
Azin, Reza; Mahmoudy, Mohamad; Raad, Seyed; Osfouri, Shahriar
2013-12-01
Storage of CO2 in deep saline aquifers is a promising techniques to mitigate global warming and reduce greenhouse gases (GHG). Correct measurement of diffusivity is essential for predicting rate of transfer and cumulative amount of trapped gas. Little information is available on diffusion of GHG in saline aquifers. In this study, diffusivity of CO2 into a saline aquifer taken from oil field was measured and modeled. Equilibrium concentration of CO2 at gas-liquid interface was determined using Henry's law. Experimental measurements were reported at temperature and pressure ranges of 32-50°C and 5900-6900 kPa, respectively. Results show that diffusivity of CO2 varies between 3.52-5.98×10-9 m2/s for 5900 kPa and 5.33-6.16×10-9 m2/s for 6900 kPa initial pressure. Also, it was found that both pressure and temperature have a positive impact on the measures of diffusion coefficient. Liquid swelling due to gas dissolution and variations in gas compressibility factor as a result of pressure decay was found negligible. Measured diffusivities were used model the physical model and develop concentration profile of dissolved gas in the liquid phase. Results of this study provide unique measures of CO2 diffusion coefficient in saline aquifer at high pressure and temperature conditions, which can be applied in full-field studies of carbon capture and sequestration projects.
Energy Technology Data Exchange (ETDEWEB)
Jakob, A
2004-07-01
In this report a comprehensive overview on the matrix diffusion of solutes in fractured crystalline rocks is presented. Some examples from observations in crystalline bedrock are used to illustrate that matrix diffusion indeed acts on various length scales. Fickian diffusion is discussed in detail followed by some considerations on rock porosity. Due to the fact that the dual-porosity medium model is a very common and versatile method for describing solute transport in fractured porous media, the transport equations and the fundamental assumptions, approximations and simplifications are discussed in detail. There is a variety of geometrical aspects, processes and events which could influence matrix diffusion. The most important of these, such as, e.g., the effect of the flow-wetted fracture surface, channelling and the limited extent of the porous rock for matrix diffusion etc., are addressed. In a further section open issues and unresolved problems related to matrix diffusion are mentioned. Since matrix diffusion is one of the key retarding processes in geosphere transport of dissolved radionuclide species, matrix diffusion was consequently taken into account in past performance assessments of radioactive waste repositories in crystalline host rocks. Some issues regarding matrix diffusion are site-specific while others are independent of the specific situation of a planned repository for radioactive wastes. Eight different performance assessments from Finland, Sweden and Switzerland were considered with the aim of finding out how matrix diffusion was addressed, and whether a consistent picture emerges regarding the varying methodology of the different radioactive waste organisations. In the final section of the report some conclusions are drawn and an outlook is given. An extensive bibliography provides the reader with the key papers and reports related to matrix diffusion. (author)
Perpendicular Diffusion of Solar Energetic Particles: Model Results and Implications for Electrons
Strauss, R. Du Toit; Dresing, Nina; Engelbrecht, N. Eugene
2017-03-01
The processes responsible for the effective longitudinal transport of solar energetic particles (SEPs) are still not completely understood. We address this issue by simulating SEP electron propagation using a spatially 2D transport model that includes perpendicular diffusion. By implementing, as far as possible, the most reasonable estimates of the transport (diffusion) coefficients, we compare our results, in a qualitative manner, to recent observations at energies of 55-105 keV, focusing on the longitudinal distribution of the peak intensity, the maximum anisotropy, and the onset time. By using transport coefficients that are derived from first principles, we limit the number of free parameters in the model to (i) the probability of SEPs following diffusing magnetic field lines, quantified by a\\in [0,1], and (ii) the broadness of the Gaussian injection function. It is found that the model solutions are extremely sensitive to the magnitude of the perpendicular diffusion coefficient and relatively insensitive to the form of the injection function as long as a reasonable value of a = 0.2 is used. We illustrate the effects of perpendicular diffusion on the model solutions and discuss the viability of this process as a dominant mechanism by which SEPs are transported in longitude. Lastly, we try to quantity the effectiveness of perpendicular diffusion as an interplay between the magnitude of the relevant diffusion coefficient and the SEP intensity gradient driving the diffusion process. It follows that perpendicular diffusion is extremely effective early in an SEP event when large intensity gradients are present, while the effectiveness quickly decreases with time thereafter.
Directory of Open Access Journals (Sweden)
Poppy Amriyati
2015-12-01
Full Text Available Traveling Salesman Problem (TSP merupakan teknik pencarian rute yang dimulai dari satu titik awal, setiap kota harus dikunjungi sekali dan kemudian kembali ke tempat asal sehingga total jarak atau waktu perjalanan adalah minimum. Untuk mengatasi kedakpastian jarak atau waktu perjalanan, maka perlu dilakukan pengembangan model TSP. Salah satu bidang Optimisasi yang mampu menyelesaikan permasalahan terkait ketidakpastian adalah Optimisasi Robust. Dalam makalah ini dibahas mengenai penerapan Optimisasi Robust pada TSP (RTSP menggunakan pendekatan Box Uncertainty dan diselesaikan dengan menggunakan Metode Branch and Bound. Disajikan simulasi numerik pada software aplikasi Maple untuk beberapa kasus nyata terkait penerapan Optimisasi RTSP , seperti masalah manajemen konstruksi, penentuan jarak tempuh kota di Pulau Jawa, dan Penentuan Rute Mandiri Fun Run.
Branching fractions of semileptonic D and D_s decays from the covariant light-front quark model
Cheng, Hai-Yang; Kang, Xian-Wei
2017-09-01
Based on the predictions of the relevant form factors from the covariant light-front quark model, we show the branching fractions for the D (D_s) → (P, S, V, A) ℓ ν _ℓ (ℓ =e or μ ) decays, where P denotes the pseudoscalar meson, S the scalar meson with a mass above 1 GeV, V the vector meson and A the axial-vector one. Comparison with the available experimental results are made, and we find an excellent agreement. The predictions for other decay modes can be tested in a charm factory, e.g., the BESIII detector. The future measurements will definitely further enrich our knowledge of the hadronic transition form factors as well as the inner structure of the even-parity mesons ( S and A).
Branching fractions of semileptonic D and D{sub s} decays from the covariant light-front quark model
Energy Technology Data Exchange (ETDEWEB)
Cheng, Hai-Yang; Kang, Xian-Wei [Academia Sinica, Institute of Physics, Taipei (China)
2017-09-15
Based on the predictions of the relevant form factors from the covariant light-front quark model, we show the branching fractions for the D(D{sub s}) → (P, S, V, A) lν{sub l} (l = e or μ) decays, where P denotes the pseudoscalar meson, S the scalar meson with a mass above 1 GeV, V the vector meson and A the axial-vector one. Comparison with the available experimental results are made, and we find an excellent agreement. The predictions for other decay modes can be tested in a charm factory, e.g., the BESIII detector. The future measurements will definitely further enrich our knowledge of the hadronic transition form factors as well as the inner structure of the even-parity mesons (S and A). (orig.)
The control of branching morphogenesis
Iber, Dagmar; Menshykau, Denis
2013-01-01
Many organs of higher organisms are heavily branched structures and arise by an apparently similar process of branching morphogenesis. Yet the regulatory components and local interactions that have been identified differ greatly in these organs. It is an open question whether the regulatory processes work according to a common principle and how far physical and geometrical constraints determine the branching process. Here, we review the known regulatory factors and physical constraints in lung, kidney, pancreas, prostate, mammary gland and salivary gland branching morphogenesis, and describe the models that have been formulated to analyse their impacts. PMID:24004663
Moustafa, Ahmed A; Kéri, Szabolcs; Somlai, Zsuzsanna; Balsdon, Tarryn; Frydecka, Dorota; Misiak, Blazej; White, Corey
2015-09-15
In this study, we tested reward- and punishment learning performance using a probabilistic classification learning task in patients with schizophrenia (n=37) and healthy controls (n=48). We also fit subjects' data using a Drift Diffusion Model (DDM) of simple decisions to investigate which components of the decision process differ between patients and controls. Modeling results show between-group differences in multiple components of the decision process. Specifically, patients had slower motor/encoding time, higher response caution (favoring accuracy over speed), and a deficit in classification learning for punishment, but not reward, trials. The results suggest that patients with schizophrenia adopt a compensatory strategy of favoring accuracy over speed to improve performance, yet still show signs of a deficit in learning based on negative feedback. Our data highlights the importance of applying fitting models (particularly drift diffusion models) to behavioral data. The implications of these findings are discussed relative to theories of schizophrenia and cognitive processing. Copyright © 2015 Elsevier B.V. All rights reserved.
Preliminary Hybrid Modeling of the Panama Canal: Operations and Salinity Diffusion
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Luis Rabelo
2012-01-01
Full Text Available This paper deals with the initial modeling of water salinity and its diffusion into the lakes during lock operation on the Panama Canal. A hybrid operational model was implemented using the AnyLogic software simulation environment. This was accomplished by generating an operational discrete-event simulation model and a continuous simulation model based on differential equations, which modeled the salinity diffusion in the lakes. This paper presents that unique application and includes the effective integration of lock operations and its impact on the environment.
Energy Technology Data Exchange (ETDEWEB)
Jacovides, C.P.; Asimakopoulos, D.N.; Kaltsounides, N.A. [Department of Environmental Physics and Meteorology, Athens University Campus, Builds PHYS-V, Athens 157 84 (Greece); Boland, J. [School of Mathematics and Statistics and Institute for Sustainable Systems and Technologies, University of South Australia (Australia)
2010-08-15
In the photosynthesis process, solar radiation energy is converted to chemical energy by using atmospheric CO{sub 2}. That is, almost all living species depend on energy produced through photosynthesis for their nourishing components thus making photosynthesis vital to the earth's life. Nevertheless, the knowledge of photosynthetic photon flux density Q{sub P} (PAR, 400-700 nm) is important in several applications dealing with plants physiology, biomass production, natural illumination in greenhouses and agricultural research. This study aiming to explore the applicability of several diffuse radiation empirical models, hourly measurements of diffuse PAR and global PAR irradiation collected at Athens (37 N, 23 E, 250 m above MSL) from 1 January 2000 to 31 December 2002, are employed. These data were used to establish an empirical model relating the spectral diffuse fraction, k{sub dP} (ratio of the diffuse-to-global PAR) with the fractional transmission of global PAR k{sub tP} (ratio of the global PAR-to-extraterrestrial solar PAR). The performance of the proposed empirical model was further compared with those of twelve other diffuse-global correlation models available in the literature in terms of the widely used statistical indicators mbe, rmse and t-test. From the overall analysis, it can be concluded that the proposed model predicts diffuse PAR values accurately, whereas most of the candidate empirical models examined here appear to be location-independent for the diffuse PAR predictions. (author)
Phase-field modeling of binary alloy solidification with coupled heat and solute diffusion
Ramirez, J. C.; Beckermann, C.; Karma, A.; Diepers, H.-J.
2004-05-01
A phase-field model is developed for simulating quantitatively microstructural pattern formation in solidification of dilute binary alloys with coupled heat and solute diffusion. The model reduces to the sharp-interface equations in a computationally tractable thin-interface limit where (i) the width of the diffuse interface is about one order of magnitude smaller than the radius of curvature of the interface but much larger than the real microscopic width of a solid-liquid interface, and (ii) kinetic effects are negligible. A recently derived antitrapping current [A. Karma, Phys. Rev. Lett. 87, 115701 (2001)] is used in the solute conservation equation to recover precisely local equilibrium at the interface and to eliminate interface stretching and surface diffusion effects that arise when the solutal diffusivities are unequal in the solid and liquid. Model results are first compared to analytical solutions for one-dimensional steady-state solidification. Two-dimensional thermosolutal dendritic growth simulations with vanishing solutal diffusivity in the solid show that both the microstructural evolution and the solute profile in the solid are accurately modeled by the present approach. Results are then presented that illustrate the utility of the model for simulating dendritic solidification for the large ratios of the liquid thermal to solutal diffusivities (Lewis numbers) typical of alloys.
Kim, Min Kyu
2010-01-01
This article discusses an effort to improve training performance in a large corporate conglomerate in South Korea. In particular, focus is placed on a new instructional design (ID) model named the Cogwheel ID model. The cogwheel metaphor is used to illustrate the integrated processes within complex training organizations, including organizational,…
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M Wahab Amjad
Full Text Available Biomolecules have been widely investigated as potential therapeutics for various diseases. However their use is limited due to rapid degradation and poor cellular uptake in vitro and in vivo. To address this issue, we synthesized a new nano-carrier system comprising of cholic acid-polyethylenimine (CA-PEI copolymer micelles, via carbodiimide-mediated coupling for the efficient delivery of small interfering ribonucleic acid (siRNA and bovine serum albumin (BSA as model protein. The mean particle size of siRNA- or BSA-loaded CA-PEI micelles ranged from 100-150 nm, with zeta potentials of +3-+11 mV, respectively. Atomic force, transmission electron and field emission scanning electron microscopy demonstrated that the micelles exhibited excellent spherical morphology. No significant morphology or size changes were observed in the CA-PEI micelles after siRNA and BSA loading. CA-PEI micelles exhibited sustained release profile, the effective diffusion coefficients were successfully estimated using a mathematically-derived cylindrical diffusion model and the release data of siRNA and BSA closely fitted into this model. High siRNA and BSA binding and loading efficiencies (95% and 70%, respectively were observed for CA-PEI micelles. Stability studies demonstrated that siRNA and BSA integrity was maintained after loading and release. The CA-PEI micelles were non cytotoxic to V79 and DLD-1 cells, as shown by alamarBlue and LIVE/DEAD cell viability assays. RT-PCR study revealed that siRNA-loaded CA-PEI micelles suppressed the mRNA for ABCB1 gene. These results revealed the promising potential of CA-PEI micelles as a stable, safe, and versatile nano-carrier for siRNA and the model protein delivery.
King, M.D.; Burkardt, N.; Clark, B.T.
2006-01-01
Recent literature on the diffusion of innovations concentrates either specifically on public adoption of policy, where social or environmental conditions are the dependent variables for adoption, or on private adoption of an innovation, where emphasis is placed on the characteristics of the innovation itself. This article uses both the policy diffusion literature and the diffusion of innovation literature to assess watershed management councils' decisions to adopt, or not adopt, scientific models. Watershed management councils are a relevant case study because they possess both public and private attributes. We report on a survey of councils in the United States that was conducted to determine the criteria used when selecting scientific models for studying watershed conditions. We found that specific variables from each body of literature play a role in explaining the choice to adopt scientific models by these quasi-public organizations. The diffusion of innovation literature contributes to an understanding of how organizations select models by confirming the importance of a model's ability to provide better data. Variables from the policy diffusion literature showed that watershed management councils that employ consultants are more likely to use scientific models. We found a gap between those who create scientific models and those who use these models. We recommend shrinking this gap through more communication between these actors and advancing the need for developers to provide more technical assistance.
Modified flooded spherical agglomerate model for gas-diffusion electrodes in alkaline fuel cells
Energy Technology Data Exchange (ETDEWEB)
Al-Saleh, M.A. [Dept. of Chemical Engineering, King Fahd Univ. of Petroleum and Minerals, Dhahran (Saudi Arabia); Gultekin, S. [Dept. of Chemical Engineering, King Fahd Univ. of Petroleum and Minerals, Dhahran (Saudi Arabia); Sleem-ur-Rahman [Dept. of Chemical Engineering, King Fahd Univ. of Petroleum and Minerals, Dhahran (Saudi Arabia); Al-Zakri, A. [Dept. of Chemical Engineering, King Fahd Univ. of Petroleum and Minerals, Dhahran (Saudi Arabia)
1995-05-01
The spherical-grain mathematical model is modified and tested against experimental data for single-layer, gas-diffusion electrodes of alkaline fuel cells. The model assumes that the electrode is made of spherical agglomerates of Raney metal and polytetrafluoroethylene (PTFE) that are flooded with electrolyte; the gas occupies the macropores of the electrode. In addition to previous analysis of the diffusion and reaction in the grains, the modified model includes the resistance of gas diffusion into the macropores and a thin electrolyte film surrounding the grain. The original model and the modified model are both compared with experimental polarization data for hydrogen oxidation on an Ni/PTFE electrode in alkaline electrolyte. The newly developed model predicts accurately the experimental data in all regions. (orig.)
Modelling of silica diffusion experiments with 32Si in Boom Clay.
Aertsens, Marc; De Cannière, Pierre; Moors, Hugo
2003-03-01
A mathematical model describing the dissolution of nuclear glass directly disposed in clay combines a first-order dissolution rate law with the diffusion of dissolved silica in clay. According to this model, the main parameters describing the long-term dissolution of the glass are etaR, the product of the diffusion accessible porosity eta and the retardation factor R, and the apparent diffusion coefficient D(app) of dissolved silica in clay. For determining the migration parameters needed for long-term predictions, four Through-Diffusion (T-D) experiments and one percolation test have been performed on undisturbed clay cores. In the Through-Diffusion experiments, the concentration decrease after injection of 32Si (radioactive labelled silica) was measured in the inlet compartment. At the end of the T-D experiments, the clay cores were cut in thin slices and the activity of labelled silica in each slice was determined. The measured activity profiles for these four clay cores are well reproducible. Since no labelled silica could be detected in the outlet compartments, the Through-Diffusion experiments are fitted by two In-Diffusion models: one model assuming linear and reversible sorption equilibrium and a second model taking into account sorption kinetics. Although the kinetic model provides better fits, due to the sufficiently long duration of the experiments, both models give approximately similar values for the fit parameters. The single percolation test leads to an apparent diffusion coefficient value about two to three times lower than those of the Through-Diffusion tests. Therefore, dissolved silica appears to be strongly retarded in Boom Clay. A retardation factor R between 100 and 300 was determined. The corresponding in situ distribution coefficient K(d) is in the range 25-75 cm(3) g(-1). The apparent diffusion coefficient of dissolved silica in Boom Clay is estimated between 2 x 10(-13) and 7 x 10(-13) m(2) s(-1). The pore diffusion coefficient is in the
Energy Technology Data Exchange (ETDEWEB)
Wang, Jing [Iowa State Univ., Ames, IA (United States)
2013-01-11
We analyze the spatiotemporal behavior of species concentrations in a diffusion-mediated conversion reaction which occurs at catalytic sites within linear pores of nanometer diameter. A strict single-file (no passing) constraint occurs in the diffusion within such narrow pores. Both transient and steady-state behavior is precisely characterized by kinetic Monte Carlo simulations of a spatially discrete lattice–gas model for this reaction–diffusion process considering various distributions of catalytic sites. Exact hierarchical master equations can also be developed for this model. Their analysis, after application of mean-field type truncation approximations, produces discrete reaction–diffusion type equations (mf-RDE). For slowly varying concentrations, we further develop coarse-grained continuum hydrodynamic reaction–diffusion equations (h-RDE) incorporating a precise treatment of single-file diffusion (SFD) in this multispecies system. Noting the shortcomings of mf-RDE and h-RDE, we then develop a generalized hydrodynamic (GH) formulation of appropriate gh-RDE which incorporates an unconventional description of chemical diffusion in mixed-component quasi-single-file systems based on a refined picture of tracer diffusion for finite-length pores. The gh-RDE elucidate the non-exponential decay of the steady-state reactant concentration into the pore and the non-mean-field scaling of the reactant penetration depth. Then an extended model of a catalytic conversion reaction within a functionalized nanoporous material is developed to assess the effect of varying the reaction product – pore interior interaction from attractive to repulsive. The analysis is performed utilizing the generalized hydrodynamic formulation of the reaction-diffusion equations which can reliably capture the complex interplay between reaction and restricted transport for both irreversible and reversible reactions.
Diffusion of a collaborative care model in primary care: a longitudinal qualitative study
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Vedel Isabelle
2013-01-01
Full Text Available Background Although collaborative team models (CTM improve care processes and health outcomes, their diffusion poses challenges related to difficulties in securing their adoption by primary care clinicians (PCPs. The objectives of this study are to understand: (1 how the perceived characteristics of a CTM influenced clinicians' decision to adopt -or not- the model; and (2 the model's diffusion process. Methods We conducted a longitudinal case study based on the Diffusion of Innovations Theory. First, diffusion curves were developed for all 175 PCPs and 59 nurses practicing in one borough of Paris. Second, semi-structured interviews were conducted with a representative sample of 40 PCPs and 15 nurses to better understand the implementation dynamics. Results Diffusion curves showed that 3.5 years after the start of the implementation, 100% of nurses and over 80% of PCPs had adopted the CTM. The dynamics of the CTM's diffusion were different between the PCPs and the nurses. The slopes of the two curves are also distinctly different. Among the nurses, the critical mass of adopters was attained faster, since they adopted the CTM earlier and more quickly than the PCPs. Results of the semi-structured interviews showed that these differences in diffusion dynamics were mostly founded in differences between the PCPs' and the nurses' perceptions of the CTM's compatibility with norms, values and practices and its relative advantage (impact on patient management and work practices. Opinion leaders played a key role in the diffusion of the CTM among PCPs. Conclusion CTM diffusion is a social phenomenon that requires a major commitment by clinicians and a willingness to take risks; the role of opinion leaders is key. Paying attention to the notion of a critical mass of adopters is essential to developing implementation strategies that will accelerate the adoption process by clinicians.
A novel rumor diffusion model considering the effect of truth in online social media
Sun, Ling; Liu, Yun; Zeng, Qing-An; Xiong, Fei
2015-12-01
In this paper, we propose a model to investigate how truth affects rumor diffusion in online social media. Our model reveals a relation between rumor and truth — namely, when a rumor is diffusing, the truth about the rumor also diffuses with it. Two patterns of the agents used to identify rumor, self-identification and passive learning are taken into account. Combining theoretical proof and simulation analysis, we find that the threshold value of rumor diffusion is negatively correlated to the connectivity between nodes in the network and the probability β of agents knowing truth. Increasing β can reduce the maximum density of the rumor spreaders and slow down the generation speed of new rumor spreaders. On the other hand, we conclude that the best rumor diffusion strategy must balance the probability of forwarding rumor and the probability of agents losing interest in the rumor. High spread rate λ of rumor would lead to a surge in truth dissemination which will greatly limit the diffusion of rumor. Furthermore, in the case of unknown λ, increasing β can effectively reduce the maximum proportion of agents who do not know the truth, but cannot narrow the rumor diffusion range in a certain interval of β.
A mixed integer bi-level DEA model for bank branch performance evaluation by Stackelberg approach
Shafiee, Morteza; Lotfi, Farhad Hosseinzadeh; Saleh, Hilda; Ghaderi, Mehdi
2016-11-01
One of the most complicated decision making problems for managers is the evaluation of bank performance, which involves various criteria. There are many studies about bank efficiency evaluation by network DEA in the literature review. These studies do not focus on multi-level network. Wu (Eur J Oper Res 207:856-864, 2010) proposed a bi-level structure for cost efficiency at the first time. In this model, multi-level programming and cost efficiency were used. He used a nonlinear programming to solve the model. In this paper, we have focused on multi-level structure and proposed a bi-level DEA model. We then used a liner programming to solve our model. In other hand, we significantly improved the way to achieve the optimum solution in comparison with the work by Wu (2010) by converting the NP-hard nonlinear programing into a mixed integer linear programming. This study uses a bi-level programming data envelopment analysis model that embodies internal structure with Stackelberg-game relationships to evaluate the performance of banking chain. The perspective of decentralized decisions is taken in this paper to cope with complex interactions in banking chain. The results derived from bi-level programming DEA can provide valuable insights and detailed information for managers to help them evaluate the performance of the banking chain as a whole using Stackelberg-game relationships. Finally, this model was applied in the Iranian bank to evaluate cost efficiency.
Attractor for a Reaction-Diffusion System Modeling Cancer Network
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Xueyong Chen
2014-01-01
Full Text Available A reaction-diffusion cancer network regulated by microRNA is considered in this paper. We study the asymptotic behavior of solution and show the existence of global uniformly bounded solution to the system in a bounded domain Ω⊂Rn. Some estimates and asymptotic compactness of the solutions are proved. As a result, we establish the existence of the global attractor in L2(Ω×L2(Ω and prove that the solution converges to stable steady states. These results can help to understand the dynamical character of cancer network and propose a new insight to study the mechanism of cancer. In the end, the numerical simulation shows that the analytical results agree with numerical simulation.
Beheshti, Iman; Olya, Hossain G T; Demirel, Hasan
2016-04-05
Recently, automatic risk assessment methods have been a target for the detection of Alzheimer's disease (AD) risk. This study aims to develop an automatic computer-aided AD diagnosis technique for risk assessment of AD using information diffusion theory. Information diffusion is a fuzzy mathematics logic of set-value that is used for risk assessment of natural phenomena, which attaches fuzziness (uncertainty) and incompleteness. Data were obtained from voxel-based morphometry analysis of structural magnetic resonance imaging. The information diffusion model results revealed that the risk of AD increases with a reduction of the normalized gray matter ratio (p > 0.5, normalized gray matter ratio <40%). The information diffusion model results were evaluated by calculation of the correlation of two traditional risk assessments of AD, the Mini-Mental State Examination and the Clinical Dementia Rating. The correlation results revealed that the information diffusion model findings were in line with Mini-Mental State Examination and Clinical Dementia Rating results. Application of information diffusion model contributes to the computerization of risk assessment of AD, which has a practical implication for the early detection of AD.
Wang, Enfeng; Wu, Yin; Cheung, Jerry S; Zhou, Iris Yuwen; Igarashi, Takahiro; Zhang, XiaoAn; Sun, Phillip Zhe
2017-10-01
Diffusion weighted imaging (DWI) has been commonly used in acute stroke examination, yet a portion of DWI lesion may be salvageable. Recently, it has been shown that diffusion kurtosis imaging (DKI) defines the most severely damaged DWI lesion that does not renormalize following early reperfusion. We postulated that the diffusion and kurtosis lesion mismatch experience heterogeneous hemodynamic and/or metabolic injury. We investigated tissue perfusion, pH, diffusion, kurtosis and relaxation from regions of the contralateral normal area, diffusion lesion, kurtosis lesion and their mismatch in an animal model of acute stroke. Our study revealed significant kurtosis and diffusion lesion volume mismatch (19.7 ± 10.7%, P lesion and kurtosis/diffusion lesion mismatch, we showed lower pH in the kurtosis lesion (pH = 6.64 ± 0.12) from that of the kurtosis/diffusion lesion mismatch (6.84 ± 0.11, P lesion and kurtosis/diffusion mismatch agreed well with literature values for regions of ischemic core and penumbra, respectively. Our work documented initial evidence that DKI may reveal the heterogeneous metabolic derangement within the commonly used DWI lesion.
A jump diffusion model for spot electricity prices and market price of risk
Bhar, Ramaprasad; Colwell, David B.; Xiao, Yuewen
2013-08-01
We construct a jump-diffusion model with seasonality, mean-reversion, time-dependent jump intensity and heteroskedastic disturbance for electricity spot prices, while keeping the analytical tractability of futures prices. We find that the jump component plays a considerably larger role than the diffusion component in the variance of spot prices. Moreover, the jump intensity is much higher during summer and winter. We also explore the seasonal market price of risk (MPR) with different maturities, from one month to five months. Our results show that the diffusion risk and the jump risk are priced quite differently.
Generalized random walk algorithm for the numerical modeling of complex diffusion processes
Vamos, C; Vereecken, H
2003-01-01
A generalized form of the random walk algorithm to simulate diffusion processes is introduced. Unlike the usual approach, at a given time all the particles from a grid node are simultaneously scattered using the Bernoulli repartition. This procedure saves memory and computing time and no restrictions are imposed for the maximum number of particles to be used in simulations. We prove that for simple diffusion the method generalizes the finite difference scheme and gives the same precision for large enough number of particles. As an example, simulations of diffusion in random velocity field are performed and the main features of the stochastic mathematical model are numerically tested.
Cross-diffusion induced Turing patterns in a sex-structured predator-prey model
DEFF Research Database (Denmark)
Liu, J.; Zhou, H.; Zhang, Lai
2012-01-01
In this paper, we consider a sex-structured predator-prey model with strongly coupled nonlinear reaction diffusion. Using the Lyapunov functional and Leray-Schauder degree theory, the existence and stability of both homogenous and heterogenous steady-states are investigated. Our results demonstrate...... that the unique homogenous steady-state is locally asymptotically stable for the associated ODE system and PDE system with self-diffusion. With the presence of the cross-diffusion, the homogeneous equilibrium is destabilized, and a heterogenous steady-state emerges as a consequence. In addition, the conditions...... guaranteeing the emergence of Turing patterns are derived....
Solution of classical evolutionary models in the limit when the diffusion approximation breaks down
Saakian, David B.; Hu, Chin-Kun
2016-10-01
The discrete time mathematical models of evolution (the discrete time Eigen model, the Moran model, and the Wright-Fisher model) have many applications in complex biological systems. The discrete time Eigen model rather realistically describes the serial passage experiments in biology. Nevertheless, the dynamics of the discrete time Eigen model is solved in this paper. The 90% of results in population genetics are connected with the diffusion approximation of the Wright-Fisher and Moran models. We considered the discrete time Eigen model of asexual virus evolution and the Wright-Fisher model from population genetics. We look at the logarithm of probabilities and apply the Hamilton-Jacobi equation for the models. We define exact dynamics for the population distribution for the discrete time Eigen model. For the Wright-Fisher model, we express the exact steady state solution and fixation probability via the solution of some nonlocal equation then give the series expansion of the solution via degrees of selection and mutation rates. The diffusion theories result in the zeroth order approximation in our approach. The numeric confirms that our method works in the case of strong selection, whereas the diffusion method fails there. Although the diffusion method is exact for the mean first arrival time, it provides incorrect approximation for the dynamics of the tail of distribution.
Directory of Open Access Journals (Sweden)
O. H. Kapitonov
2010-05-01
Full Text Available A mathematical model of coulostatic relaxation of the potential for solid metallic electrode was presented. The solution in the case of limiting diffusion current was obtained. On the basis of this model the technique of concentration measurements for heavy metal ions in diluted solutions was suggested. The model adequacy was proved by experimental data.
The first-passage time distribution for the diffusion model with variable drift
DEFF Research Database (Denmark)
Blurton, Steven Paul; Kesselmeier, Miriam; Gondan, Matthias
2017-01-01
The Ratcliff diffusion model is now arguably the most widely applied model for response time data. Its major advantage is its description of both response times and the probabilities for correct as well as incorrect responses. The model assumes a Wiener process with drift between two constant abs...
Onset to First Alcohol Use in Early Adolescence : A Network Diffusion Model
Light, John M.; Greenan, Charlotte C.; Rusby, Julie C.; Nies, Kimberley M.; Snijders, Tom A. B.
A novel version of Snijders's stochastic actor-based modeling (SABM) framework is applied to model the diffusion of first alcohol use through middle school-wide longitudinal networks of early adolescents, aged approximately 11-14years. Models couple a standard SABM for friendship network evolution
Ergodic inequality of a two-parameter infinitely-many-alleles diffusion model
Zhou, Youzhou
2015-01-01
In this paper three models are considered. They are the infinitely-many-neutral-alleles model of Ethier and Kurtz (1981), the two-parameter infinitely-many-alleles diffusion model of Petrov (2009), and the infinitely-many-alleles model with symmetric dominance Ethier and Kurtz (1998). New representations of the transition densities are obtained for the first two models and the ergodic inequalities are provided for all three models.
Assessing cognitive processes with diffusion model analyses: a tutorial based on fast-dm-30.
Voss, Andreas; Voss, Jochen; Lerche, Veronika
2015-01-01
Diffusion models can be used to infer cognitive processes involved in fast binary decision tasks. The model assumes that information is accumulated continuously until one of two thresholds is hit. In the analysis, response time distributions from numerous trials of the decision task are used to estimate a set of parameters mapping distinct cognitive processes. In recent years, diffusion model analyses have become more and more popular in different fields of psychology. This increased popularity is based on the recent development of several software solutions for the parameter estimation. Although these programs make the application of the model relatively easy, there is a shortage of knowledge about different steps of a state-of-the-art diffusion model study. In this paper, we give a concise tutorial on diffusion modeling, and we present fast-dm-30, a thoroughly revised and extended version of the fast-dm software (Voss and Voss, 2007) for diffusion model data analysis. The most important improvement of the fast-dm version is the possibility to choose between different optimization criteria (i.e., Maximum Likelihood, Chi-Square, and Kolmogorov-Smirnov), which differ in applicability for different data sets.
Directory of Open Access Journals (Sweden)
Carson eIngo
2015-03-01
Full Text Available In this paper, we provide a context for the modeling approaches that have been developed to describe non-Gaussian diffusion behavior, which is ubiquitous in diffusion weighted magnetic resonance imaging of water in biological tissue. Subsequently, we focus on the formalism of the continuous time random walk theory to extract properties of subdiffusion and superdiffusionthrough novel simplifications of the Mittag-Leffler function. For the case of time-fractional subdiffusion, we compute the kurtosis for the Mittag-Leffler function, which provides both a connection and physical context to the much-used approach of diffusional kurtosis imaging. We provide Monte Carlo simulations to illustrate the concepts of anomalous diffusion as stochastic processes of the random walk. Finally, we demonstrate the clinical utility of the Mittag-Leffler function as a model to describe tissue microstructure through estimations of subdiffusion and kurtosis with diffusion MRI measurements in the brain of a chronic ischemic stroke patient.
Description of Guava Osmotic Dehydration Using a Three-Dimensional Analytical Diffusion Model
Directory of Open Access Journals (Sweden)
Wilton Pereira da Silva
2014-01-01
Full Text Available The mass migrations during osmotic dehydration of guava were studied. Parallelepiped shaped slices were dipping in syrup of distilled water and sucrose with two concentrations and two temperatures. It was supposed that a three-dimensional diffusion model with boundary condition of the first kind satisfactorily describes the mass migrations and that the volume and effective mass diffusivities can be assumed constant during the process. The effective mass diffusivities were determined by coupling the three-dimensional analytical solution of the diffusion equation with an optimizer based on the inverse method. The proposed model well described the kinetics of water and sucrose migrations and enabled determining the mass distributions (water and sucrose within the product at any instant.
Ingo, Carson; Sui, Yi; Chen, Yufen; Parrish, Todd B; Webb, Andrew G; Ronen, Itamar
2015-03-01
In this paper, we provide a context for the modeling approaches that have been developed to describe non-Gaussian diffusion behavior, which is ubiquitous in diffusion weighted magnetic resonance imaging of water in biological tissue. Subsequently, we focus on the formalism of the continuous time random walk theory to extract properties of subdiffusion and superdiffusion through novel simplifications of the Mittag-Leffler function. For the case of time-fractional subdiffusion, we compute the kurtosis for the Mittag-Leffler function, which provides both a connection and physical context to the much-used approach of diffusional kurtosis imaging. We provide Monte Carlo simulations to illustrate the concepts of anomalous diffusion as stochastic processes of the random walk. Finally, we demonstrate the clinical utility of the Mittag-Leffler function as a model to describe tissue microstructure through estimations of subdiffusion and kurtosis with diffusion MRI measurements in the brain of a chronic ischemic stroke patient.
Ingo, Carson; Sui, Yi; Chen, Yufen; Parrish, Todd; Webb, Andrew; Ronen, Itamar
2015-03-01
In this paper, we provide a context for the modeling approaches that have been developed to describe non-Gaussian diffusion behavior, which is ubiquitous in diffusion weighted magnetic resonance imaging of water in biological tissue. Subsequently, we focus on the formalism of the continuous time random walk theory to extract properties of subdiffusion and superdiffusion through novel simplifications of the Mittag-Leffler function. For the case of time-fractional subdiffusion, we compute the kurtosis for the Mittag-Leffler function, which provides both a connection and physical context to the much-used approach of diffusional kurtosis imaging. We provide Monte Carlo simulations to illustrate the concepts of anomalous diffusion as stochastic processes of the random walk. Finally, we demonstrate the clinical utility of the Mittag-Leffler function as a model to describe tissue microstructure through estimations of subdiffusion and kurtosis with diffusion MRI measurements in the brain of a chronic ischemic stroke patient.
Numerical Simulation of Water Jet Flow Using Diffusion Flux Mixture Model
Directory of Open Access Journals (Sweden)
Zhi Shang
2014-01-01
Full Text Available A multidimensional diffusion flux mixture model was developed to simulate water jet two-phase flows. Through the modification of the gravity using the gradients of the mixture velocity, the centrifugal force on the water droplets was able to be considered. The slip velocities between the continuous phase (gas and the dispersed phase (water droplets were able to be calculated through multidimensional diffusion flux velocities based on the modified multidimensional drift flux model. Through the numerical simulations, comparing with the experiments and the simulations of traditional algebraic slip mixture model on the water mist spray, the model was validated.
Directory of Open Access Journals (Sweden)
Bernard Wong
2009-01-01
martingale component is based on an ergodic diffusion with a specified stationary distribution. These models are particularly useful for long horizon asset-liability management as they allow the modelling of long term stock returns with heavy tail ergodic diffusions, with tractable, time homogeneous dynamics, and which moreover admit a complete financial market, leading to unique pricing and hedging strategies. Unfortunately the standard specifications of these models in literature admit arbitrage opportunities. We investigate in detail the features of the existing model specifications which create these arbitrage opportunities and consequently construct a modification that is arbitrage free.
Model Dust Envelopes for Asymptotic Giant Branch Stars. Carbon Stars. II. Carbon Stars
Directory of Open Access Journals (Sweden)
Kyung-Won Suh
1995-12-01
Full Text Available We have modeled the dust envelopes around carbon stars with close attention to the evolution of the structure of the dust shells. We use various dust density distributions to take account the effect of the superwind due to the helium shell flash by adding a density increased region. Depending on the position and quality of the density increased region, the model results are different from the results with conventional density distribution. The new results fit the observations of some carbon stars better. The IR two-color diagrams comparing the results of the super wind models and IRAS observation of 252 carbon stars have been made. The new results can explain much wider regions on the IR two-color diagrams.
A simplified computer model of cardiovascular system with an arm branch.
Chen, Baoming; Song, Tianyi; Guo, Tao; Xiang, Haiyan; Liu, Yanyong; Qin, Yufei; Cao, Zhengtao; Yu, Mengsun
2014-01-01
Non-invasive pressure simulators that regenerate oscillometric waveforms promise an alternative to expensive clinical trials for validating oscillometric noninvasive blood pressure devices. However, existing simulators only provide oscillometric pressure in cuff and thus have a limited accuracy. It is promising to build a physical simulator that contains a synthetic arm with a built-in brachial artery and an affiliated hydraulic model of cardiovascular system. To guide the construction of this kind of simulator, this paper presents a computer model of cardiovascular system with a relatively simple structure, where the distribution of pressures and flows in aorta root and brachial artery can be simulated, and the produced waves are accordant with the physical data. This model can be used to provide the parameters and structure that will be needed to build the new simulator.
A simple branching model that reproduces language family and language population distributions
Schwämmle, Veit; de Oliveira, Paulo Murilo Castro
2009-07-01
Human history leaves fingerprints in human languages. Little is known about language evolution and its study is of great importance. Here we construct a simple stochastic model and compare its results to statistical data of real languages. The model is based on the recent finding that language changes occur independently of the population size. We find agreement with the data additionally assuming that languages may be distinguished by having at least one among a finite, small number of different features. This finite set is also used in order to define the distance between two languages, similarly to linguistics tradition since Swadesh.
Gong, Zhejun; Gong, Zhefeng
2012-06-29
Body weight is at least partly controlled by the choices made by a human in response to external stimuli. Changes in body weight are mainly caused by energy intake. By analyzing the mechanisms involved in food intake, we considered that molecular diffusion plays an important role in body weight changes. We propose a model based on Fick's second law of diffusion to simulate the relationship between energy intake and body weight. This model was applied to food intake and body weight data recorded in humans; the model showed a good fit to the experimental data. This model was also effective in predicting future body weight. In conclusion, this model based on molecular diffusion provides a new insight into the body weight mechanisms. This article was reviewed by Dr. Cabral Balreira (nominated by Dr. Peter Olofsson), Prof. Yang Kuang and Dr. Chao Chen.
Modeling and Uncertainty Quantification of Vapor Sorption and Diffusion in Heterogeneous Polymers
Energy Technology Data Exchange (ETDEWEB)
Sun, Yunwei [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Harley, Stephen J. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Glascoe, Elizabeth A. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
2015-08-13
A high-fidelity model of kinetic and equilibrium sorption and diffusion is developed and exercised. The gas-diffusion model is coupled with a triple-sorption mechanism: Henry’s law absorption, Langmuir adsorption, and pooling or clustering of molecules at higher partial pressures. Sorption experiments are conducted and span a range of relative humidities (0-95 %) and temperatures (30-60 °C). Kinetic and equilibrium sorption properties and effective diffusivity are determined by minimizing the absolute difference between measured and modeled uptakes. Uncertainty quantification and sensitivity analysis methods are described and exercised herein to demonstrate the capability of this modeling approach. Water uptake in silica-filled and unfilled poly(dimethylsiloxane) networks is investigated; however, the model is versatile enough to be used with a wide range of materials and vapors.
Ovchinnikov, M. N.
2017-09-01
The fundamental solutions of the diffusion equation for the local-equilibrium and nonlocal models are considered as the limiting cases of the solution of a problem related to consideration of the Brownian particles random walks. The differences between fundamental solutions, flows and concentration gradients were studied. The new modified non-local diffusion equation of the telegrapher type with correction function is suggested. It contains only microparameters of the random walk problem.
Modeling Diffusion and Buoyancy-Driven Convection with Application to Geological CO2 Storage
Allen, Rebecca
2015-04-01
ABSTRACT Modeling Diffusion and Buoyancy-Driven Convection with Application to Geological CO2 Storage Rebecca Allen Geological CO2 storage is an engineering feat that has been undertaken around the world for more than two decades, thus accurate modeling of flow and transport behavior is of practical importance. Diffusive and convective transport are relevant processes for buoyancy-driven convection of CO2 into underlying fluid, a scenario that has received the attention of numerous modeling studies. While most studies focus on Darcy-scale modeling of this scenario, relatively little work exists at the pore-scale. In this work, properties evaluated at the pore-scale are used to investigate the transport behavior modeled at the Darcy-scale. We compute permeability and two different forms of tortuosity, namely hydraulic and diffusive. By generating various pore ge- ometries, we find hydraulic and diffusive tortuosity can be quantitatively different in the same pore geometry by up to a factor of ten. As such, we emphasize that these tortuosities should not be used interchangeably. We find pore geometries that are characterized by anisotropic permeability can also exhibit anisotropic diffusive tortuosity. This finding has important implications for buoyancy-driven convection modeling; when representing the geological formation with an anisotropic permeabil- ity, it is more realistic to also account for an anisotropic diffusivity. By implementing a non-dimensional model that includes both a vertically and horizontally orientated 5 Rayleigh number, we interpret our findings according to the combined effect of the anisotropy from permeability and diffusive tortuosity. In particular, we observe the Rayleigh ratio may either dampen or enhance the diffusing front, and our simulation data is used to express the time of convective onset as a function of the Rayleigh ratio. Also, we implement a lattice Boltzmann model for thermal convective flows, which we treat as an analog for
A Viral Branching Model for Predicting the Spread of Electronic Word-of-Mouth
R.J.A. van der Lans (Ralf); G.H. van Bruggen (Gerrit); J. Eliashberg (Jehoshua); B. Wierenga (Berend)
2009-01-01
textabstractIn a viral marketing campaign an organization develops a marketing message, and stimulates customers to forward this message to their contacts. Despite its increasing popularity, there are no models yet that help marketers to predict how many customers a viral marketing campaign will
Efficient model checking for duration calculus based on branching-time approximations
DEFF Research Database (Denmark)
Fränzle, Martin; Hansen, Michael Reichhardt
2008-01-01
Duration Calculus (abbreviated to DC) is an interval-based, metric-time temporal logic designed for reasoning about embedded real-time systems at a high level of abstraction. But the complexity of model checking any decidable fragment featuring both negation and chop, DC's only modality, is non...
Manikis, Georgios C; Marias, Kostas; Lambregts, Doenja M J; Nikiforaki, Katerina; van Heeswijk, Miriam M; Bakers, Frans C H; Beets-Tan, Regina G H; Papanikolaou, Nikolaos
2017-01-01
The purpose of this study was to compare the performance of four diffusion models, including mono and bi-exponential both Gaussian and non-Gaussian models, in diffusion weighted imaging of rectal cancer. Nineteen patients with rectal adenocarcinoma underwent MRI examination of the rectum before chemoradiation therapy including a 7 b-value diffusion sequence (0, 25, 50, 100, 500, 1000 and 2000 s/mm2) at a 1.5T scanner. Four different diffusion models including mono- and bi-exponential Gaussian (MG and BG) and non-Gaussian (MNG and BNG) were applied on whole tumor volumes of interest. Two different statistical criteria were recruited to assess their fitting performance, including the adjusted-R2 and Root Mean Square Error (RMSE). To decide which model better characterizes rectal cancer, model selection was relied on Akaike Information Criteria (AIC) and F-ratio. All candidate models achieved a good fitting performance with the two most complex models, the BG and the BNG, exhibiting the best fitting performance. However, both criteria for model selection indicated that the MG model performed better than any other model. In particular, using AIC Weights and F-ratio, the pixel-based analysis demonstrated that tumor areas better described by the simplest MG model in an average area of 53% and 33%, respectively. Non-Gaussian behavior was illustrated in an average area of 37% according to the F-ratio, and 7% using AIC Weights. However, the distributions of the pixels best fitted by each of the four models suggest that MG failed to perform better than any other model in all patients, and the overall tumor area. No single diffusion model evaluated herein could accurately describe rectal tumours. These findings probably can be explained on the basis of increased tumour heterogeneity, where areas with high vascularity could be fitted better with bi-exponential models, and areas with necrosis would mostly follow mono-exponential behavior.
Notes on the Langevin model for turbulent diffusion of ``marked`` particles
Energy Technology Data Exchange (ETDEWEB)
Rodean, H.C.
1994-01-26
Three models for scalar diffusion in turbulent flow (eddy diffusivity, random displacement, and on the Langevin equation) are briefly described. These models random velocity increment based Fokker-Planck equation is introduced as are then examined in more detail in the reverse order. The Fokker-Planck equation is the Eulerian equivalent of the Lagrangian Langevin equation, and the derivation of e outlined. The procedure for obtaining the deterministic and stochastic components of the Langevin equation from Kolmogorov`s 1941 inertial range theory and the Fokker-Planck equation is described. it is noted that a unique form of the Langevin equation can be determined for diffusion in one dimension but not in two or three. The Langevin equation for vertical diffusion in the non-Gaussian convective boundary layer is presented and successively simplified for Gaussian inhomogeneous turbulence and Gaussian homogeneous turbulence in turn. The Langevin equation for Gaussian inhomogeneous turbulence is mathematically transformed into the random displacement model. It is shown how the Fokker-Planck equation for the random displacement model is identical in form to the partial differential equation for the eddy diffusivity model. It is noted that the Langevin model is applicable in two cases in which the other two are not valid: (1) very close in time and distance to the point of scalar release and (2) the non-Gaussian convective boundary layer. The two- and three-dimensional cases are considered in Part III.
Porth, O.; Vorster, M. J.; Lyutikov, M.; Engelbrecht, N. E.
2016-08-01
We study the transport of high-energy particles in pulsar wind nebulae (PWN) using three-dimensional magnetohydrodynamic (MHD) and test-particle simulations, as well as a Fokker-Planck particle transport model. The latter includes radiative and adiabatic losses, diffusion, and advection on the background flow of the simulated MHD nebula. By combining the models, the spatial evolution of flux and photon index of the X-ray synchrotron emission is modelled for the three nebulae G21.5-0.9, the inner regions of Vela, and 3C 58, thereby allowing us to derive governing parameters: the magnetic field strength, average flow velocity, and spatial diffusion coefficient. For comparison, the nebulae are also modelled with the semi-analytic Kennel & Coroniti model but the Porth et al. model generally yields better fits to the observational data. We find that high velocity fluctuations in the turbulent nebula (downstream of the termination shock) give rise to efficient diffusive transport of particles, with average Péclet number close to unity, indicating that both advection and diffusion play an important role in particle transport. We find that the diffusive transport coefficient of the order of ˜ 2 × 1027(Ls/0.42 Ly) cm2 s- 1 (Ls is the size of the termination shock) is independent of energy up to extreme particle Lorentz factors of γp ˜ 1010.
q-Space Deep Learning: Twelve-Fold Shorter and Model-Free Diffusion MRI Scans.
Golkov, Vladimir; Dosovitskiy, Alexey; Sperl, Jonathan I; Menzel, Marion I; Czisch, Michael; Samann, Philipp; Brox, Thomas; Cremers, Daniel
2016-05-01
Numerous scientific fields rely on elaborate but partly suboptimal data processing pipelines. An example is diffusion magnetic resonance imaging (diffusion MRI), a non-invasive microstructure assessment method with a prominent application in neuroimaging. Advanced diffusion models providing accurate microstructural characterization so far have required long acquisition times and thus have been inapplicable for children and adults who are uncooperative, uncomfortable, or unwell. We show that the long scan time requirements are mainly due to disadvantages of classical data processing. We demonstrate how deep learning, a group of algorithms based on recent advances in the field of artificial neural networks, can be applied to reduce diffusion MRI data processing to a single optimized step. This modification allows obtaining scalar measures from advanced models at twelve-fold reduced scan time and detecting abnormalities without using diffusion models. We set a new state of the art by estimating diffusion kurtosis measures from only 12 data points and neurite orientation dispersion and density measures from only 8 data points. This allows unprecedentedly fast and robust protocols facilitating clinical routine and demonstrates how classical data processing can be streamlined by means of deep learning.
Energy Technology Data Exchange (ETDEWEB)
Berry, R. A. [Idaho National Lab. (INL), Idaho Falls, ID (United States)
2017-08-14
In the literature, the abundance of pipe network junction models, as well as inclusion of dissipative losses between connected pipes with loss coefficients, has been treated using the incompressible flow assumption of constant density. This approach is fundamentally, physically wrong for compressible flow with density change. This report introduces a mathematical modeling approach for general junctions in piping network systems for which the transient flows are compressible and single-phase. The junction could be as simple as a 1-pipe input and 1-pipe output with differing pipe cross-sectional areas for which a dissipative loss is necessary, or it could include an active component, between an inlet pipe and an outlet pipe, such as a pump or turbine. In this report, discussion will be limited to the former. A more general branching junction connecting an arbitrary number of pipes with transient, 1-D compressible single-phase flows is also presented. These models will be developed in a manner consistent with the use of a general equation of state like, for example, the recent Spline-Based Table Look-up method [1] for incorporating the IAPWS-95 formulation [2] to give accurate and efficient calculations for properties for water and steam with RELAP-7 [3].
Urban stormwater inundation simulation based on SWMM and diffusive overland-flow model.
Chen, Wenjie; Huang, Guoru; Zhang, Han
2017-12-01
With rapid urbanization, inundation-induced property losses have become more and more severe. Urban inundation modeling is an effective way to reduce these losses. This paper introduces a simplified urban stormwater inundation simulation model based on the United States Environmental Protection Agency Storm Water Management Model (SWMM) and a geographic information system (GIS)-based diffusive overland-flow model. SWMM is applied for computation of flows in storm sewer systems and flooding flows at junctions, while the GIS-based diffusive overland-flow model simulates surface runoff and inundation. One observed rainfall scenario on Haidian Island, Hainan Province, China was chosen to calibrate the model and the other two were used for validation. Comparisons of the model results with field-surveyed data and InfoWorks ICM (Integrated Catchment Modeling) modeled results indicated the inundation model in this paper can provide inundation extents and reasonable inundation depths even in a large study area.
A reversible mesoscopic model of diffusion in liquids: from giant fluctuations to Fick’s law
Donev, Aleksandar; Fai, Thomas G.; Vanden-Eijnden, Eric
2014-04-01
We study diffusive mixing in the presence of thermal fluctuations under the assumption of large Schmidt number. In this regime we obtain a limiting equation that contains a diffusive stochastic drift term with diffusion coefficient obeying a Stokes-Einstein relation, in addition to the expected advection by a random velocity. The overdamped limit correctly reproduces both the enhanced diffusion in the ensemble-averaged mean and the long-range correlated giant fluctuations in individual realizations of the mixing process, and is amenable to efficient numerical solution. Through a combination of Eulerian and Lagrangian numerical methods we demonstrate that diffusion in liquids is not most fundamentally described by Fick’s irreversible law; rather, diffusion is better modeled as reversible random advection by thermal velocity fluctuations. We find that the diffusion coefficient is effectively renormalized to a value that depends on the scale of observation. Our work reveals somewhat unexpected connections between flows at small scales, dominated by thermal fluctuations, and flows at large scales, dominated by turbulent fluctuations.
Energy Technology Data Exchange (ETDEWEB)
Short, Mark [Los Alamos National Laboratory; Chliquete, Carlos [Los Alamos National Laboratory
2011-01-20
The pulsating dynamics of gaseous detonations with a model two-step chain-branching kinetic mechanism are studied both numerically and asymptotically. The model studied here was also used in [4], [3] and [2] and mimics the attributes of some chain-branching reaction mechanisms. Specifically, the model comprises a chain-initiationlbranching zone with an Arrhenius temperature-sensitive rate behind the detonation shock where fuel is converted into chain-radical with no heat release. This is followed by a chain-termination zone having a temperature insensitive rate where the exothermic heat of reaction is released. The lengths of these two zones depend on the relative rates of each stage. It was determined in [4] and [3] via asymptotic and numerical analysis that the ratio of the length of the chain-branching zone to that of the chain-initation zone relative to the size of the von Neumann state scaled activation energy in the chain initiation/branching zone has a primary influence of the stability of one-dimensional pulsating instability behavior for this model. In [2], the notion of a specific stability parameter related to this ratio was proposed that determines the boundary between stable and unstable waves. In [4], a slow-time varying asymptotic study was conducted of pulsating instability of Chapman-Jouguet (CJ) detonations with the above two-step rate model, assuming a large activation energy for the chain-initiation zone and a chain-termination zone longer than the chain-initiation zone. Deviations D{sub n}{sup (1)} ({tau}) of the detonation velocity from Chapman-Jouguet were of the order of the non-dimensional activation energy. Solutions were sought for a pulsation timescale of the order of the non-dimensional activation energy times the particle transit time through the induction zone. On this time-scale, the evolution of the chain-initation zone is quasi-steady. In [4], a time-dependent non-linear evolution equation for D{sub n}{sup (1)} ({tau}) was then
Kochukhov, O.; Ryabchikova, T. A.
2018-02-01
A series of recent theoretical atomic diffusion studies has address the challenging problem of predicting inhomogeneous vertical and horizontal chemical element distributions in the atmospheres of magnetic ApBp stars. Here we critically assess the most sophisticated of such diffusion models - based on a time-dependent treatment of the atomic diffusion in a magnetized stellar atmosphere - by direct comparison with observations as well by testing the widely used surface mapping tools with the spectral line profiles predicted by this theory. We show that the mean abundances of Fe and Cr are grossly underestimated by the time-dependent theoretical diffusion model, with discrepancies reaching a factor of 1000 for Cr. We also demonstrate that Doppler imaging inversion codes, based either on modelling of individual metal lines or line-averaged profiles simulated according to theoretical three-dimensional abundance distribution, are able to reconstruct correct horizontal chemical spot maps despite ignoring the vertical abundance variation. These numerical experiments justify a direct comparison of the empirical two-dimensional Doppler maps with theoretical diffusion calculations. This comparison is generally unfavourable for the current diffusion theory, as very few chemical elements are observed to form overabundance rings in the horizontal field regions as predicted by the theory and there are numerous examples of element accumulations in the vicinity of radial field zones, which cannot be explained by diffusion calculations.
Quasi-Brittle Fracture Modeling of Preflawed Bitumen Using a Diffuse Interface Model
Directory of Open Access Journals (Sweden)
Yue Hou
2016-01-01
Full Text Available Fundamental understandings on the bitumen fracture mechanism are vital to improve the mixture design of asphalt concrete. In this paper, a diffuse interface model, namely, phase-field method is used for modeling the quasi-brittle fracture in bitumen. This method describes the microstructure using a phase-field variable which assumes one in the intact solid and negative one in the crack region. Only the elastic energy will directly contribute to cracking. To account for the growth of cracks, a nonconserved Allen-Cahn equation is adopted to evolve the phase-field variable. Numerical simulations of fracture are performed in bituminous materials with the consideration of quasi-brittle properties. It is found that the simulation results agree well with classic fracture mechanics.
Modeling lateral circulation and its influence on the along-channel flow in a branched estuary
Zhu, Lei; He, Qing; Shen, Jian
2017-12-01
A numerical modeling study of the influence of the lateral flow on the estuarine exchange flow was conducted in the north passage of the Changjiang estuary. The lateral flows show substantial variabilities within a flood-ebb tidal cycle. The strong lateral flow occurring during flood tide is caused primarily by the unique cross-shoal flow that induces a strong northward (looking upstream) barotropic force near the surface and advects saltier water toward the northern part of the channel, resulting in a southward baroclinic force caused by the lateral density gradient. Thus, a two-layer structure of lateral flows is produced during the flood tide. The lateral flows are vigorous near the flood slack and the magnitude can exceed that of the along-channel tidal flow during that period. The strong vertical shear of the lateral flows and the salinity gradient in lateral direction generate lateral tidal straining, which are out of phase with the along-channel tidal straining. Consequently, stratification is enhanced at the early stage of the ebb tide. In contrast, strong along-channel straining is apparent during the late ebb tide. The vertical mixing disrupts the vertical density gradient, thus suppressing stratification. The impact of lateral straining on stratification during spring tide is more pronounced than that of along-channel straining during late flood and early ebb tides. The momentum balance along the estuary suggests that lateral flow can augment the residual exchange flow. The advection of lateral flows brings low-energy water from the shoal to the deep channel during the flood tide, whereas the energetic water is moved to the shoal via lateral advection during the ebb tide. The impact of lateral flow on estuarine circulation of this multiple-channel estuary is different from single-channel estuary. A model simulation by blocking the cross-shoal flow shows that the magnitudes of lateral flows and tidal straining are reduced. Moreover, the reduced lateral
Modelling Of Eco-innovation Diffusion: The EU Eco-label
Directory of Open Access Journals (Sweden)
KIJEK TOMASZ
2015-03-01
Full Text Available The aim of this article is to carry out a theoretical and empirical analysis of the process of eco-label diffusion. Eco-labels allow consumers to identify products and services that have a reduced environmental impact during their life cycle. Thus, they are aimed at diminishing the information gap between sellers and buyers. The results of the estimation using the Bass model indicate that the diffusion of the EU eco-label has been most dynamic in countries such as Hungary, Poland, Denmark, Germany and France. In turn, the scope of diffusion (absolute saturation level reached the highest value for companies in France and Italy. In addition, the results of the study confirm the stimulating impact of the scope of eco-label diffusion on consumer awareness of environmental issues. This finding points to the need for environmental education among consumers, which could in turn encourage firms to undertake pro-environmental actions.
Directory of Open Access Journals (Sweden)
Gianni Pagnini
2012-01-01
inhomogeneity and nonstationarity properties of the medium. For instance, when this superposition is applied to the time-fractional diffusion process, the resulting Master Equation emerges to be the governing equation of the Erdélyi-Kober fractional diffusion, that describes the evolution of the marginal distribution of the so-called generalized grey Brownian motion. This motion is a parametric class of stochastic processes that provides models for both fast and slow anomalous diffusion: it is made up of self-similar processes with stationary increments and depends on two real parameters. The class includes the fractional Brownian motion, the time-fractional diffusion stochastic processes, and the standard Brownian motion. In this framework, the M-Wright function (known also as Mainardi function emerges as a natural generalization of the Gaussian distribution, recovering the same key role of the Gaussian density for the standard and the fractional Brownian motion.
Desvillettes, Laurent
2010-01-01
We study a continuous coagulation-fragmentation model with constant kernels for reacting polymers (see [M. Aizenman and T. Bak, Comm. Math. Phys., 65 (1979), pp. 203-230]). The polymers are set to diffuse within a smooth bounded one-dimensional domain with no-flux boundary conditions. In particular, we consider size-dependent diffusion coefficients, which may degenerate for small and large cluster-sizes. We prove that the entropy-entropy dissipation method applies directly in this inhomogeneous setting. We first show the necessary basic a priori estimates in dimension one, and second we show faster-than-polynomial convergence toward global equilibria for diffusion coefficients which vanish not faster than linearly for large sizes. This extends the previous results of [J.A. Carrillo, L. Desvillettes, and K. Fellner, Comm. Math. Phys., 278 (2008), pp. 433-451], which assumes that the diffusion coefficients are bounded below. © 2009 Society for Industrial and Applied Mathematics.
Modeling of Ni Diffusion Induced Austenite Formation in Ferritic Stainless Steel Interconnects
DEFF Research Database (Denmark)
Chen, Ming; Alimadadi, Hossein; Molin, Sebastian
2017-01-01
stainless steel was conducted, using the CALPHAD (CALculation of PHAse Diagrams) approach with the DICTRA (DIffusion Controlled TRAnsformation) software. The kinetics of inter-diffusion and austenite formation was explored in detail. The simulation was further validated by comparing with experiments......Ferritic stainless steel interconnect plates are widely used in planar solid oxide fuel cell and electrolysis cell stacks. During stack production and operation, nickel from the Ni/yttria stabilized zirconia fuel electrode or from the Ni contact component layer diffuses into the interconnect plate......, causing transformation of the ferritic phase into an austenitic phase in the interface region. This is accompanied with changes in volume, and in mechanical and corrosion properties of the interconnect plates. In this work, kinetic modeling of the inter-diffusion between Ni and FeCr based ferritic...
Frazier, Zachary
2012-01-01
Abstract Particle-based Brownian dynamics simulations offer the opportunity to not only simulate diffusion of particles but also the reactions between them. They therefore provide an opportunity to integrate varied biological data into spatially explicit models of biological processes, such as signal transduction or mitosis. However, particle based reaction-diffusion methods often are hampered by the relatively small time step needed for accurate description of the reaction-diffusion framework. Such small time steps often prevent simulation times that are relevant for biological processes. It is therefore of great importance to develop reaction-diffusion methods that tolerate larger time steps while maintaining relatively high accuracy. Here, we provide an algorithm, which detects potential particle collisions prior to a BD-based particle displacement and at the same time rigorously obeys the detailed balance rule of equilibrium reactions. We can show that for reaction-diffusion processes of particles mimicking proteins, the method can increase the typical BD time step by an order of magnitude while maintaining similar accuracy in the reaction diffusion modelling. PMID:22697237
Directory of Open Access Journals (Sweden)
Wallace Agyei
2015-07-01
Full Text Available Abstract Queues are common sight of many banks in Ghana. The obvious implication of customers waiting in long and winding queues could result to prolonged discomfort and economic cost to them however increasing the service rate will require additional number of tellers which implies extra cost to management. This study therefore attempts to find the trade-off between minimizing the total economic cost waiting cost and service cost and the provision of a satisfactory and reasonably shortest possible time of service to customers in order to assist management of the bank in deciding the optimal number of tellers needed. Data for this study was collected at the Ghana Commercial Bank Ltd Kumasi Main Branch for one month through observations interviews and by administering of questionnaire and was formulated as multi-server single line queuing model. The data was analyzed using TORA optimization Software as well as using descriptive method of analysis. The performance measures of different queuing systems were evaluated and analyzed. The results of the analysis showed using a five teller system was better than a four or a six-teller system in terms of average waiting time and thetotal economic cost hence the study recommends that the management should adopt a five teller model to reduce total economic costs and increase customer satisfaction.
Directory of Open Access Journals (Sweden)
Mohammad Ali Boroumand
2006-07-01
Full Text Available Background: We report experimental myocardial infarction by occluding coronary arteries in ovine models. Methods: Twelve ewes were included in the study. After the chest was opened by left lateral thoracotomy incision, the second diagonal branch of the left anterior descending coronary artery was ligated at a point approximately 40% distant from its base. Prophylactic antiarrhythmics were administered. Animals were mechanically ventilated during surgery and stayed in the ICU for 24h afterwards. Experiments were then evaluated by echocardiographic, electrocardiographic, hemodynamic, serologic and morphologic investigations. Echocardiographic measurements were repeated after two months and animals were then sacrificed for postmortem cardiac examinations. Results: All animals survived the surgical procedure. Cyanotic discoloration and hypokinesia in the cardiac tissue in an area of 3×4 cm plus ST-segment elevations was detected immediately after vessel ligation. More over, there were pathologic Q- waves 2 months later. Echocardiographic evaluations revealed an average of 22% relative decrease in cardiac ejection fraction. Wall motion analysis demonstrated anteroapical hypokinesia and akinesia in all animals one day and two months after operation. Thin walled infarcted areas with tissue fibrosis were evident in pathologic investigations two months after surgery. Conclusion: In conclusion, we developed a practical and safe method of producing myocardial infarction in large animal models.
An agent-based model for diffusion of electric vehicles
Kangur, A.; Bockarjova, M.; Jager, W.; Verbrugge, R.
2017-01-01
The transition from fuel cars to electric cars is a large-scale process involving many interactions between consumers and other stakeholders over decades. To explore how policies may interfere with consumer behavior over such a long time period, we developed a social simulation model. In this model,
Bifurcation Analysis of Gene Propagation Model Governed by Reaction-Diffusion Equations
Directory of Open Access Journals (Sweden)
Guichen Lu
2016-01-01
Full Text Available We present a theoretical analysis of the attractor bifurcation for gene propagation model governed by reaction-diffusion equations. We investigate the dynamical transition problems of the model under the homogeneous boundary conditions. By using the dynamical transition theory, we give a complete characterization of the bifurcated objects in terms of the biological parameters of the problem.
Reaction Time for Trimolecular Reactions in Compartment-based Reaction-Diffusion Models
Li, F; Chen, M; Erban, R; Cao, Y
2016-01-01
Trimolecular reaction models are investigated in the compartment-based (lattice-based) framework for stochastic reaction-diffusion modelling. The formulae for the first collision time and the mean reaction time are derived for the case where three molecules are present in the solution.
Proposing an Educational Scaling-and-Diffusion Model for Inquiry-Based Learning Designs
Hung, David; Lee, Shu-Shing
2015-01-01
Education cannot adopt the linear model of scaling used by the medical sciences. "Gold standards" cannot be replicated without considering process-in-learning, diversity, and student-variedness in classrooms. This article proposes a nuanced model of educational scaling-and-diffusion, describing the scaling (top-down supports) and…
On the well posedness and further regularity of a diffusive three species aquatic model
Parshad, R.D.
2012-01-01
We consider Upadhay\\'s three species aquatic food chain model, with the inclusion of spatial spread. This is a well established food chain model for the interaction of three given aquatic species. It exhibits rich dynamical behavior, including chaos. We prove the existence of a global weak solution to the diffusive system, followed by existence of local mild and strong solution.
Travelling Waves of an n-Species Food Chain Model with Spatial Diffusion and Time Delays
Fei Hu; Yuyin Xu; Z. Wang; Wei Ding
2014-01-01
We investigate an n-species food chain model with spatial diffusion and time delays. By using Schauder’s fixed point theorem, we obtain the result about the existence of the travelling wave solutions of the food chain model with reaction term satisfying the partial quasimonotonicity conditions.
Travelling Waves of an n-Species Food Chain Model with Spatial Diffusion and Time Delays
Directory of Open Access Journals (Sweden)
Fei Hu
2014-01-01
Full Text Available We investigate an n-species food chain model with spatial diffusion and time delays. By using Schauder’s fixed point theorem, we obtain the result about the existence of the travelling wave solutions of the food chain model with reaction term satisfying the partial quasimonotonicity conditions.
Energy Technology Data Exchange (ETDEWEB)
Barbante, Paolo [Dipartimento di Matematica, Politecnico di Milano - Piazza Leonardo da Vinci 32 - 20133 Milano (Italy); Frezzotti, Aldo; Gibelli, Livio [Dipartimento di Scienze e Tecnologie Aerospaziali, Politecnico di Milano - Via La Masa 34 - 20156 Milano (Italy)
2014-12-09
The unsteady evaporation of a thin planar liquid film is studied by molecular dynamics simulations of Lennard-Jones fluid. The obtained results are compared with the predictions of a diffuse interface model in which capillary Korteweg contributions are added to hydrodynamic equations, in order to obtain a unified description of the liquid bulk, liquid-vapor interface and vapor region. Particular care has been taken in constructing a diffuse interface model matching the thermodynamic and transport properties of the Lennard-Jones fluid. The comparison of diffuse interface model and molecular dynamics results shows that, although good agreement is obtained in equilibrium conditions, remarkable deviations of diffuse interface model predictions from the reference molecular dynamics results are observed in the simulation of liquid film evaporation. It is also observed that molecular dynamics results are in good agreement with preliminary results obtained from a composite model which describes the liquid film by a standard hydrodynamic model and the vapor by the Boltzmann equation. The two mathematical model models are connected by kinetic boundary conditions assuming unit evaporation coefficient.
Technology diffusion in hospitals : A log odds random effects regression model
Blank, J.L.T.; Valdmanis, V.G.
2013-01-01
This study identifies the factors that affect the diffusion of hospital innovations. We apply a log odds random effects regression model on hospital micro data. We introduce the concept of clustering innovations and the application of a log odds random effects regression model to describe the
Technology diffusion in hospitals: A log odds random effects regression model
J.L.T. Blank (Jos); V.G. Valdmanis (Vivian G.)
2015-01-01
textabstractThis study identifies the factors that affect the diffusion of hospital innovations. We apply a log odds random effects regression model on hospital micro data. We introduce the concept of clustering innovations and the application of a log odds random effects regression model to
A ranking of diffusion MRI compartment models with in vivo human brain data
Ferizi, Uran; Schneider, Torben; Panagiotaki, Eleftheria; Nedjati-Gilani, Gemma; Zhang, Hui; Wheeler-Kingshott, Claudia A M; Alexander, Daniel C
2014-01-01
Purpose Diffusion magnetic resonance imaging (MRI) microstructure imaging provides a unique noninvasive probe into tissue microstructure. The technique relies on biophysically motivated mathematical models, relating microscopic tissue features to the magnetic resonance (MR) signal. This work aims to determine which compartment models of diffusion MRI are best at describing measurements from in vivo human brain white matter. Methods Recent work shows that three compartment models, designed to capture intra-axonal, extracellular, and isotropically restricted diffusion, best explain multi-b-value data sets from fixed rat corpus callosum. We extend this investigation to in vivo by using a live human subject on a clinical scanner. The analysis compares models of one, two, and three compartments and ranks their ability to explain the measured data. We enhance the original methodology to further evaluate the stability of the ranking. Results As with fixed tissue, three compartment models explain the data best. However, a clearer hierarchical structure and simpler models emerge. We also find that splitting the scanning into shorter sessions has little effect on the ranking of models, and that the results are broadly reproducible across sessions. Conclusion Three compartments are required to explain diffusion MR measurements from in vivo corpus callosum, which informs the choice of model for microstructure imaging applications in the brain. Magn Reson Med 72:1785–1792, 2014. © 2013 The authors. Magnetic Resonance in Medicine Published by Wiley Periodicals, Inc. on behalf of International Society of Medicine in Resonance. PMID:24347370
Modeling the oxygen diffusion of nanocomposite-based food packaging films.
Bhunia, Kanishka; Dhawan, Sumeet; Sablani, Shyam S
2012-07-01
Polymer-layered silicate nanocomposites have been shown to improve the gas barrier properties of food packaging polymers. This study developed a computer simulation model using the commercial software, COMSOL Multiphysics to analyze changes in oxygen barrier properties in terms of relative diffusivity, as influenced by configuration and structural parameters that include volume fraction (φ), aspect ratio (α), intercalation width (W), and orientation angle (θ) of nanoparticles. The simulation was performed at different φ (1%, 3%, 5%, and 7%), α (50, 100, 500, and 1000), and W (1, 3, 5, and 7 nm). The θ value was varied from 0° to 85°. Results show that diffusivity decreases with increasing volume fraction, but beyond φ = 5% and α = 500, diffusivity remained almost constant at W values of 1 and 3 nm. Higher relative diffusivity coincided with increasing W and decreasing α value for the same volume fraction of nanoparticles. Diffusivity increased as the rotational angle increased, gradually diminishing the influence of nanoparticles. Diffusivity increased drastically as θ changed from 15° to 30° (relative increment in relative diffusivity was almost 3.5 times). Nanoparticles with exfoliation configuration exhibited better oxygen barrier properties compared to intercalation. The finite element model developed in this study provides insight into oxygen barrier properties for nanocomposite with a wide range of structural parameters. This model can be used to design and manufacture an ideal nanocomposite-based food packaging film with improved gas barrier properties for industrial applications. The model will assist in designing nanocomposite polymeric structures of desired gas barrier properties for food packaging applications. In addition, this study will be helpful in formulating a combination of nanoparticle structural parameters for designing nanocomposite membranes with selective permeability for the industrial applications including membrane
Understanding Protein Diffusion in Polymer Solutions: A Hydration with Depletion Model.
Feng, Xiaoqing; Chen, Anpu; Wang, Juan; Zhao, Nanrong; Hou, Zhonghuai
2016-09-20
Understanding the diffusion of proteins in polymer solutions is of ubiquitous importance for modeling processes in vivo. Here, we present a theoretical framework to analyze the decoupling of translational and rotational diffusion of globular proteins in semidilute polymer solutions. The protein is modeled as a spherical particle with an effective hydrodynamic radius, enveloped by a depletion layer. On the basis of the scaling formula of macroscopic viscosity for polymer solutions as well as the mean-field theory for the depletion effect, we specify the space-dependent viscosity profile in the depletion zone. Following the scheme of classical fluid mechanics, the hydrodynamic drag force as well as torque exerted to the protein can be numerically evaluated, which then allows us to obtain the translational and rotational diffusion coefficients. We have applied our model to study the diffusion of proteins in two particular polymer solution systems, i.e., poly(ethylene glycol) (PEG) and dextran. Strikingly, our theoretical results can reproduce the experimental results quantitatively very well, and fully reproduce the decoupling between translational and rotational diffusion observed in the experiments. In addition, our model facilitates insights into how the effective hydrodynamic radius of the protein changes with polymer systems. We found that the effective hydrodynamic radius of proteins in PEG solutions is nearly the same as that in pure water, indicating PEG induces preferential hydration, while, in dextran solutions, it is generally enhanced due to the stronger attractive interaction between protein and dextran molecules.
Using effective boundary conditions to model fast diffusion on a road in a large field
Li, Huicong; Wang, Xuefeng
2017-10-01
We consider a logistic diffusion equation on the plane consisting of two components, a ‘road’ that is parallel to the x-axis, and a ‘field’, in each of which the diffusion rate differs significantly. Compared to the size of the field, the width δ of the road is assumed to be small. Thus in this diffusion equation multiple scales appear in two places: the spatial variable and the diffusion parameter. Such an equation is not easy to solve numerically, and it is not easy to see the effects of the road. Recently, Berestycki, Roquejoffre and Rossi provide a model which is meant to resolve these issues. In this paper we first use the idea of effective boundary conditions (EBCs) to propose, rigorously, a different model: we study the limit of the solution of the original logistic equation as δ→ 0 , obtaining a limiting model, in which the road now is the x-axis with EBCs imposed on it. This effective problem has no multiple scales and hence should be easier to solve numerically. Moreover, to see the effects of the road, we further investigate the asymptotic propagation speed of the effective model, showing that the road indeed enhances the spreading speed along its direction, provided that the diffusion rate on the road is of order O≤ft(δ-1\\right) .
Effects of spatial diffusion on nonequilibrium steady states in a model for prebiotic evolution
Intoy, B. F.; Wynveen, A.; Halley, J. W.
2016-10-01
Effects of spatial diffusion in a Kauffman-like model for prebiotic evolution previously studied in a "well-mixed" limit are reported. The previous model was parametrized by a parameter p defined as the probability that a possible reaction in a network of reactions characterizing the artificial chemistry actually appears in the chemical network. In the model reported here, we numerically study a grid of such well-mixed reactors on a two-dimensional spatial lattice in which the model chemical constituents can hop between neighboring reactors at a rate controlled by a second parameter η . We report the frequency of appearance of three distinct types of nonequilibrium steady states, characterized as "diffusively alive locally dead" (DALD), "diffusively dead locally alive" (DDLA) and "diffusively alive locally alive" (DALA). The types are defined according to whether they are chemically equilibrated at each site, diffusively equilibrated between sites, or neither, respectively. With our parametrization of the definitions of these nonequilibrium states, many of the DALA states are growing rapidly in population due to the explosive population growth of a few sites, while their entropy remains well below its equilibrium value. Sharp temporal transitions occur as exploding sites appear. DALD states occur less commonly than the other types and also usually harbor a few explosively growing sites but transitions are less sharp than in DALA systems.
MICROSTRUCTURE-BASED PREDICTION MODEL FOR CHLORIDE ION DIFFUSIVITY IN HYDRATED CEMENT PASTE
Directory of Open Access Journals (Sweden)
Liguo Ma
2017-03-01
Full Text Available In cement hydration, various hydration products and pores are produced to form a complex microstructure. The quantity of the hydration products and pores heavily influences the macroscopic properties of hydrated cement paste. The chloride ion diffusivity of cement paste is considered to have a close relation to durability. We propose a prediction model of the chloride ion diffusivity of cement paste using homogenization theory to find the relationship between the microstructure and the macroscopic properties. This model considers the percolation phenomenon and the tortuosity of the transport path in the hydrated cement paste microstructure. The chloride ion diffusion coefficient of the cement paste was tested via electricity-accelerated diffusion experiments on cement pastes prepared using three water-cement ratios (0.23, 0.35 and 0.53, respectively. The Jennings-Tennis model was used to calculate the quantity of hydration products in the hydrated cement paste microstructure. With different homogenization theories, the predicted results of the chloride ion diffusion coefficients agree well with the experimental data, which shows the reliability of the presented model.
Interpretation of diffusion MR imaging data using a gamma distribution model.
Oshio, Koichi; Shinmoto, Hiroshi; Mulkern, Robert V
2014-01-01
Although many models have been proposed to interpret non-Gaussian diffusion MRI data in biological tissues, it is often difficult to see the correlation between the MRI data and the histological changes in the tissue. Among these models, so called statistical models, which assume the diffusion coefficient D is distributed continuously within a voxel, are more suitable for interpreting the data in a histological context than others. In this work, we examined a statistical model based on the gamma distribution. First, the proposed gamma model, the bi-exponential model, and the truncated Gaussian model were compared for goodness of fit. To evaluate diagnostic capability, area fractions of certain D ranges were evaluated. The area fraction for D 3.0 mm2/s (frac > 3) was considered to reflect perfusion component. A clinical data set of histologically proven prostate cancer cases from previous study was used. For the cancer tissue, the gamma model was better fit than the truncated Gaussian model, and there was no significant difference between the gamma model and the bi-exponential model. For the normal peripheral zone tissue, there was no significant differences among all models. In the 2D scatter plot of frac 3, Cancer and non-cancer tissues were clearly separated. Using the proposed model, the diffusion MR data was well fit, and histological interpretation of the data appears possible.
American Society for Testing and Materials. Philadelphia
2008-01-01
1.1 This test method provides procedures for measuring the leach rates of elements from a solidified matrix material, determining if the releases are controlled by mass diffusion, computing values of diffusion constants based on models, and verifying projected long-term diffusive releases. This test method is applicable to any material that does not degrade or deform during the test. 1.1.1 If mass diffusion is the dominant step in the leaching mechanism, then the results of this test can be used to calculate diffusion coefficients using mathematical diffusion models. A computer program developed for that purpose is available as a companion to this test method (Note 1). 1.1.2 It should be verified that leaching is controlled by diffusion by a means other than analysis of the leach test solution data. Analysis of concentration profiles of species of interest near the surface of the solid waste form after the test is recommended for this purpose. 1.1.3 Potential effects of partitioning on the test results can...
Shrinkage Simulation of Holographic Grating Using Diffusion Model in PQ-PMMA Photopolymer
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Wei Zepeng
2015-01-01
Full Text Available An extended model based on nonlocal polymerization-driven diffusion model is derived by introducing shrinkage process for describing photopolymerized dynamics in PQ-PMMA photopolymer. The kinetic parameters, polymerization rate and diffusion rate are experimentally determined to provide quantitative simulation. The numerical results show that the fringes at edge of grating are firstly shifted and consequently, it leads to a contrast reduction of holograms. Finally, theoretical results are experimentally checked by temporal evolution of diffraction efficiency, and the shrinkage coefficient 0.5% is approximately achieved under incident intensity 25.3mw/cm2. This work can enhance the applicability of diffusion model and contribute to the reasonable description of the grating formation in the photopolymer.
Analytical solution of diffusion model for nutrient release from controlled release fertilizer
Ameenuddin Irfan, Sayed; Razali, Radzuan; KuShaari, KuZilati; Mansor, Nurlidia; Azeem, Babar
2017-09-01
An analytical method has been developed to solve the initial value problem which arises from Fick’s diffusion equation encountered in the modelling of the Controlled Release Fertilizers. The proposed analytical solution is developed using the modified Adomian decomposition method. This method does not require the discretization method, reliability and efficiency of this method is more and it also reduces the calculation time. The model has predicted the effect of granule radius and diffusion coefficient on the nutrient release and total release time of Controlled Release Fertilizer. Model has predicted that increase in the radius of granule reduces the release and vice versa in case of diffusion coefficient. Detailed understanding of these parameters helps in improved designing of Controlled Release Fertilizer.
Fazeli, Mohammadreza
In this thesis, pore network modeling was used to study how the microstructure of the polymer electrolyte membrane (PEM) fuel cell gas diffusion layer (GDL) influences multiphase transport within the composite layer. An equivalent pore network of a GDL was used to study the effects of GDL/catalyst layer condensation points and contact quality on the spatial distribution of liquid water in the GDL. Next, pore networks extracted from synchrotron-based micro-computed tomography images of compressed GDLs were employed to simulate liquid water transport in GDL materials over a range of compression pressures, and favorable GDL compression values for preferred liquid water distributions were found for two commercially available GDL materials. Finally, a technique was developed for calculating the oxygen diffusivity in carbon paper substrates with a microporous layer (MPL) coating through pore network modeling. A hybrid network was incorporated into the pore network model, and effective diffusivity predictions of MPL coated GDL materials were obtained.
Grey Box Modelling of Flow in Sewer Systems with State Dependent Diffusion
DEFF Research Database (Denmark)
Breinholt, Anders; Thordarson, Fannar Örn; Møller, Jan Kloppenborg
2011-01-01
flow prediction limits, because the observation noise is proportionally scaled with the modelled output. Finally it is concluded that a state proportional diffusion term best and adequately describes the one-step flow prediction uncertainty, and a proper description of the system noise is important......Generating flow forecasts with uncertainty limits from rain gauge inputs in sewer systems require simple models with identifiable parameters that can adequately describe the stochastic phenomena of the system. In this paper, a simple grey-box model is proposed that is attractive for both....... It is shown that an additive diffusion noise term description leads to a violation of the physical constraints of the system, whereas a state dependent diffusion noise avoids this problem and should be favoured. It is also shown that a logarithmic transformation of the flow measurements secures positive lower...
Hund, S J; Antaki, J F
2011-01-01
Transport phenomena of platelets and white blood cells (WBCs) are fundamental to the processes of vascular disease and thrombosis. Unfortunately, the dilute volume occupied by these cells is not amenable to fluid-continuum modeling, and yet the cell count is large enough that modeling each individual cell is impractical for most applications. The most feasible option is to treat them as dilute species governed by convection and diffusion; however, this is further complicated by the role of the red blood cell (RBC) phase on the transport of these cells. We therefore propose an extended convection–diffusion (ECD) model based on the diffusive balance of a fictitious field potential, Ψ, that accounts for the gradients of both the dilute phase and the local hematocrit. The ECD model was applied to the flow of blood in a tube and between parallel plates in which a profile for the RBC concentration field was imposed and the resulting platelet concentration field predicted. Compared to prevailing enhanced-diffusion models that dispersed the platelet concentration field, the ECD model was able to simulate a near-wall platelet excess, as observed experimentally. The extension of the ECD model depends only on the ability to prescribe the hematocrit distribution, and therefore may be applied to a wide variety of geometries to investigate platelet-mediated vascular disease and device-related thrombosis. PMID:19809124
Navarro, Juan M; Escolano, José; Cobos, Maximo; López, José J
2013-03-01
The diffusion equation model was used for room acoustic simulations to predict the sound pressure level and the reverberation time. The technical literature states that the diffusion equation method accurately models the late portion of the room impulse response if the energy is sufficiently scattered. This work provides conclusions on the validity of the diffusion equation model for rooms with homogeneous dimensions in relation to the scattering coefficients of the boundaries. A systematic evaluation was conducted out to determine the ranges of the absorption and scattering coefficient values that result in low noticeable differences between the predictions from a geometrical acoustic model and those from the diffusion equation model.
A Jump-Diffusion Model with Stochastic Volatility and Durations
DEFF Research Database (Denmark)
Wei, Wei; Pelletier, Denis
Market microstructure theories suggest that the durations between transactions carry information about volatility. This paper puts forward a model featuring stochastic volatility, stochastic conditional duration, and jumps to analyze high frequency returns and durations. Durations affect price...... jumps in two ways: as exogenous sampling intervals, and through the interaction with volatility. We adopt a bivariate Ornstein-Ulenbeck process to model intraday volatility and conditional duration. We develop a MCMC algorithm for the inference on irregularly spaced multivariate processes with jumps....... The algorithm provides smoothed estimates of the latent variables such as spot volatility, conditional duration, jump times, and jump sizes. We apply this model to IBM data and find that volatility and conditional duration are interdependent. We also find that jumps play an important role in return variation...
Continuous-time random-walk model for anomalous diffusion in expanding media
Le Vot, F.; Abad, E.; Yuste, S. B.
2017-09-01
Expanding media are typical in many different fields, e.g., in biology and cosmology. In general, a medium expansion (contraction) brings about dramatic changes in the behavior of diffusive transport properties such as the set of positional moments and the Green's function. Here, we focus on the characterization of such effects when the diffusion process is described by the continuous-time random-walk (CTRW) model. As is well known, when the medium is static this model yields anomalous diffusion for a proper choice of the probability density function (pdf) for the jump length and the waiting time, but the behavior may change drastically if a medium expansion is superimposed on the intrinsic random motion of the diffusing particle. For the case where the jump length and the waiting time pdfs are long-tailed, we derive a general bifractional diffusion equation which reduces to a normal diffusion equation in the appropriate limit. We then study some particular cases of interest, including Lévy flights and subdiffusive CTRWs. In the former case, we find an analytical exact solution for the Green's function (propagator). When the expansion is sufficiently fast, the contribution of the diffusive transport becomes irrelevant at long times and the propagator tends to a stationary profile in the comoving reference frame. In contrast, for a contracting medium a competition between the spreading effect of diffusion and the concentrating effect of contraction arises. In the specific case of a subdiffusive CTRW in an exponentially contracting medium, the latter effect prevails for sufficiently long times, and all the particles are eventually localized at a single point in physical space. This "big crunch" effect, totally absent in the case of normal diffusion, stems from inefficient particle spreading due to subdiffusion. We also derive a hierarchy of differential equations for the moments of the transport process described by the subdiffusive CTRW model in an expanding medium
Turing patterns in a reaction-diffusion model with the Degn-Harrison reaction scheme
Li, Shanbing; Wu, Jianhua; Dong, Yaying
2015-09-01
In this paper, we consider a reaction-diffusion model with Degn-Harrison reaction scheme. Some fundamental analytic properties of nonconstant positive solutions are first investigated. We next study the stability of constant steady-state solution to both ODE and PDE models. Our result also indicates that if either the size of the reactor or the effective diffusion rate is large enough, then the system does not admit nonconstant positive solutions. Finally, we establish the global structure of steady-state bifurcations from simple eigenvalues by bifurcation theory and the local structure of the steady-state bifurcations from double eigenvalues by the techniques of space decomposition and implicit function theorem.
Cosmic-Ray Nuclei, Antiprotons and Gamma-rays in the Galaxy: a New Diffusion Model
Evoli, C.; Gaggero, D.; Grasso, D.; Maccione, L.
2008-01-01
We model the transport of cosmic ray nuclei in the Galaxy by means of a new numerical code. Differently from previous numerical models we account for a generic spatial distribution of the diffusion coefficient. We found that in the case of radially uniform diffusion, the main secondary/primary ratios (B/C, N/O and sub-Fe/Fe) and the modulated antiproton spectrum match consistently the available observations. Convection and re-acceleration do not seem to be required in the en...
HOMOR: higher order model outlier rejection for high b-value MR diffusion data.
Pannek, Kerstin; Raffelt, David; Bell, Christopher; Mathias, Jane L; Rose, Stephen E
2012-11-01
Diffusion MR images are prone to artefacts caused by head movement and cardiac pulsation. Previous techniques for the automated voxel-wise detection of signal intensity outliers have relied on the fit of the diffusion tensor to the data (RESTORE). However, the diffusion tensor cannot appropriately model more than a single fibre population, which may lead to inaccuracies when identifying outlier voxels in crossing fibre regions, particularly when high b-values are used to obtain increased angular contrast. HOMOR (higher order model outlier rejection) was developed to overcome this limitation and is introduced in this study. HOMOR is closely related to RESTORE, but employs a higher order model capable of resolving multiple fibre populations within a voxel. Using high b-value (b=3000 s/mm2) diffusion data from a population of 90 healthy participants, as well as simulations, HOMOR was found to identify a decreased number of outlier voxels compared to RESTORE primarily within areas of crossing, bending and fanning fibres. At lower b-values, however, RESTORE and HOMOR give similar results, which is demonstrated using diffusion data acquired at b=1000 s/mm2 in a mixed cohort. This study demonstrates that, although RESTORE is suitable for low b-value data, HOMOR is better suited for high b-value data. Copyright © 2012 Elsevier Inc. All rights reserved.
Application of Parameter Estimation for Diffusions and Mixture Models
DEFF Research Database (Denmark)
Nolsøe, Kim
The first part of this thesis proposes a method to determine the preferred number of structures, their proportions and the corresponding geometrical shapes of an m-membered ring molecule. This is obtained by formulating a statistical model for the data and constructing an algorithm which samples...... error models. This is obtained by constructing an estimating function through projections of some chosen function of Yti+1 onto functions of previous observations Yti ; : : : ; Yt0 . The process of interest Xti+1 is partially observed through a measurement equation Yti+1 = h(Xti+1)+ noice, where h...
Zhu, Yanjie; Peng, Xi; Wu, Yin; Wu, Ed X; Ying, Leslie; Liu, Xin; Zheng, Hairong; Liang, Dong
2017-02-01
To develop a new model-based method with spatial and parametric constraints (MB-SPC) aimed at accelerating diffusion tensor imaging (DTI) by directly estimating the diffusion tensor from highly undersampled k-space data. The MB-SPC method effectively incorporates the prior information on the joint sparsity of different diffusion-weighted images using an L1-L2 norm and the smoothness of the diffusion tensor using a total variation seminorm. The undersampled k-space datasets were obtained from fully sampled DTI datasets of a simulated phantom and an ex-vivo experimental rat heart with acceleration factors ranging from 2 to 4. The diffusion tensor was directly reconstructed by solving a minimization problem with a nonlinear conjugate gradient descent algorithm. The reconstruction performance was quantitatively assessed using the normalized root mean square error (nRMSE) of the DTI indices. The MB-SPC method achieves acceptable DTI measures at an acceleration factor up to 4. Experimental results demonstrate that the proposed method can estimate the diffusion tensor more accurately than most existing methods operating at higher net acceleration factors. The proposed method can significantly reduce artifact, particularly at higher acceleration factors or lower SNRs. This method can easily be adapted to MR relaxometry parameter mapping and is thus useful in the characterization of biological tissue such as nerves, muscle, and heart tissue. © 2016 American Association of Physicists in Medicine.
The Reactive-Diffusive Length of OH and Ozone in Model Organic Aerosols.
Lee, Lance; Wilson, Kevin
2016-09-01
A key step in the heterogeneous oxidation of atmospheric aerosols is the reaction of ozone (O3) and hydroxyl radicals (OH) at the gas-particle interface. The formation of reaction products and free radical intermediates and their spatial distribution inside the particle is a sensitive function of the length over which these oxidants diffuse prior to reaction. The reactive-diffusive length of OH and ozone at organic aerosol interfaces is determined by observing the change in the effective uptake coefficient for size-selected model aerosols comprising a reactive core and a thin nanometer-sized (0-12 nm) organic shell. The core and shell materials are selected so that they are immiscible and adopt an assumed core-shell configuration. The results indicate a reactive-diffusive length of 1.4 nm for hydroxyl (OH) radicals in squalane and 1.0 nm for ozone in squalene. Measurements for a purely diffusive system allow for an estimate for diffusion constant (1.6 × 10(-6) cm(2)/s) of ozone in squalane to be determined. The reactive-diffusive length offers a simple first order estimate of how shielding of aerosols by immiscible layers can alter estimates of oxidative lifetimes of aerosols in the atmosphere.
Directory of Open Access Journals (Sweden)
JAIR RODRIGUES GARCIA-JÃŠNIOR
2009-07-01
Full Text Available
The influence of supplementary-branched chain amino acids (BCAA on 65Zn metabolism in rats was investigated in this study. Nutritional indicators of Zn, as absorption, body retention and secretion, were estimated using a multicompartment model. Two groups of eight male rats were force-fed a zinc-adequate diet (control group and a zinc-adequate diet plus 0.52 9 BCAA/kg diet during 15 days. There was no significant difference for intake of Zn, absorption (34%, intestinal transit (tso and the leveI of Zn in the intravascular compartment (plasma. On the other hand the extravascular compartment (organs and specific concentration of Zn per 9 of tissue decreased after experimental period (p < 0.05 The rats supplememted with BCAA secreted Zn by urine twice faster than controls, but the secrotion of zinc by endogen feces were not decreased in this group. Thus, BCAA supplement changed the kinetic of Zn, increasing the urinary secretion and the loss of Zn from the body.
Hyrien, O; Peslak, S A; Yanev, N M; Palis, J
2015-06-01
The erythroid lineage is a particularly sensitive target of radiation injury. We model the dynamics of immature (BFU-E) and mature (CFU-E) erythroid progenitors, which have markedly different kinetics of recovery, following sublethal total body irradiation using a two-type reducible age-dependent branching process with immigration. Properties of the expectation and variance of the frequencies of both types of progenitors are presented. Their explicit expressions are derived when the process is Markovian, and their asymptotic behavior is identified in the age-dependent (non-Markovian) case. Analysis of experimental data on the kinetics of BFU-E and CFU-E reveals that the probability of self-renewal increases transiently for both cell types following sublethal irradiation. In addition, the probability of self-renewal increased more for CFU-E than for BFU-E. The strategy adopted by the erythroid lineage ensures replenishment of the BFU-E compartment while optimizing the rate of CFU-E recovery. Finally, our analysis also indicates that radiation exposure causes a delay in BFU-E recovery consistent with injury to the hematopoietic stem/progenitor cell compartment that give rise to BFU-E. Erythroid progenitor self-renewal is thus an integral component of the recovery of the erythron in response to stress.
Kekenes-Huskey, Peter M.; Eun, Changsun; McCammon, J. A.
2015-09-01
Biochemical reaction networks consisting of coupled enzymes connect substrate signaling events with biological function. Substrates involved in these reactions can be strongly influenced by diffusion "barriers" arising from impenetrable cellular structures and macromolecules, as well as interactions with biomolecules, especially within crowded environments. For diffusion-influenced reactions, the spatial organization of diffusion barriers arising from intracellular structures, non-specific crowders, and specific-binders (buffers) strongly controls the temporal and spatial reaction kinetics. In this study, we use two prototypical biochemical reactions, a Goodwin oscillator, and a reaction with a periodic source/sink term to examine how a diffusion barrier that partitions substrates controls reaction behavior. Namely, we examine how conditions representative of a densely packed cytosol, including reduced accessible volume fraction, non-specific interactions, and buffers, impede diffusion over nanometer length-scales. We find that diffusion barriers can modulate the frequencies and amplitudes of coupled diffusion-influenced reaction networks, as well as give rise to "compartments" of decoupled reactant populations. These effects appear to be intensified in the presence of buffers localized to the diffusion barrier. These findings have strong implications for the role of the cellular environment in tuning the dynamics of signaling pathways.
The stochastic diffusion models of nerve membrane depolarization and interspike interval generation.
Lánský, P; Sato, S
1999-01-01
The first step to make the theory of stochastic diffusion processes that arise in connection with single neuron description more understandable is reviewing the deterministic leaky-integrator model. After this step the general principles of simple stochastic models are summarized which clearly reveal that two different sources of noise, intrinsic and external, can be identified. Many possible strategies of neuronal coding exist and one of these, the rate coding, for which the stochastic modeling is relevant, is pursued further. The rate coding is reflected, in experimental as well as theoretical studies, by an input-output curve and its properties are reviewed for the most common stochastic diffusion models. The results for the simplest stochastic diffusion model, the Wiener process, are presented and from them strong limitations of this model can be understood. The most common diffusion model is the Ornstein-Uhlenbeck process, which is one substantial step closer to reality since the spontaneous changes of the membrane potential are included in the model. Both these models are characterized by an additive noise. Taking into account the state dependency of the changes caused by neuronal inputs, we derive models where the noise has a multiplicative effect on the membrane depolarization. Two of these models are compared with the Wiener and Ornstein-Uhlenbeck models. How to identify the parameters of the models, which is an unavoidable task for the models verification, is investigated. The time-variable input is taken into account in the last part of the paper. An intuitive approach is stressed throughout the review.
Data assimilation experiments using the diffusive back and forth nudging for the NEMO ocean model
Ruggiero, G. A.; Ourmières, Y.; Cosme, E.; Blum, J.; Auroux, D.; Verron, J.
2014-07-01
The Diffusive Back and Forth Nudging (DBFN) is an easy-to-implement iterative data assimilation method based on the well-known Nudging method. It consists in a sequence of forward and backward model integrations, within a given time window, both of them using a feedback term to the observations. Therefore in the DBFN, the Nudging asymptotic behavior is translated into an infinite number of iterations within a bounded time domain. In this method, the backward integration is carried out thanks to what is called backward model, which is basically the forward model with reversed time step sign. To maintain numeral stability the diffusion terms also have their sign reversed, giving a diffusive character to the algorithm. In this article the DBFN performance to control a primitive equation ocean model is investigated. In this kind of model non-resolved scales are modeled by diffusion operators which dissipate energy that cascade from large to small scales. Thus, in this article the DBFN approximations and their consequences on the data assimilation system set-up are analyzed. Our main result is that the DBFN may provide results which are comparable to those produced by a 4Dvar implementation with a much simpler implementation and a shorter CPU time for convergence.
Investigation of acoustically coupled enclosures using a diffusion-equation model.
Xiang, Ning; Jing, Yun; Bockman, Alexander C
2009-09-01
Recent application of coupled-room systems in performing arts spaces has prompted active research on sound fields in these complex geometries. This paper applies a diffusion-equation model to the study of acoustics in coupled-rooms. Acoustical measurements are conducted on a scale-model of two coupled-rooms. Using the diffusion model and the experimental results the current work conducts in-depth investigations on sound pressure level distributions, providing further evidence supporting the valid application of the diffusion-equation model. Analysis of the results within the Bayesian framework allows for quantification of the double-slope characteristics of sound-energy decays obtained from the diffusion-equation numerical modeling and the experimental measurements. In particular, Bayesian decay analysis confirms sound-energy flux modeling predictions that time-dependent sound-energy flows in coupled-room systems experience feedback in the form of energy flow-direction change across the aperture connecting the two rooms in cases where the dependent room is more reverberant than the source room.
An agent-based model for diffusion of electric vehicles
Kangur, Ayla; Jager, Wander; Verbrugge, Rineke; Bockarjova, Marija
2017-01-01
The transition from fuel cars to electric cars is a large-scale process involving many interactions between consumers and other stakeholders over decades. To explore how policies may interact with consumer behavior over such a long time period, we developed an agent-based social simulation model. In
Unified Model for The Study of Diffusion Localization and Dissipation
Cohen, D
1997-01-01
A new model that generalizes the study of quantum Brownian motion (BM) is constructed. We consider disordered environment that may be either static (quenched), noisy or dynamical. The Zwanzig-Caldeira-Leggett BM-model constitutes formally a special case where the disorder auto-correlation length is taken to be infinite. Alternatively, localization problem is obtained if the noise auto-correlation time is taken to be infinite. Also the general case of weak nonlinear coupling to thermal, possibly chaotic bath is handled by the same formalism. A general, Feynman-Vernon type path-integral expression for the propagator is introduced. Wigner transformed version of this expression is utilized in order to facilitate comparison with the classical limit. It is demonstrated that non-stochastic genuine quantal manifestations are associated with the new model. It is clarified that such effects are absent in the standard BM model, either the disorder or the chaotic nature of the bath are essential. Quantal correction to th...
K correlations and facet models in diffuse scattering
Hoenders, B.J.; Jakeman, E.; Baltes, H.P.; Steinle, B.
1979-01-01
The angular intensity distribution of radiation scattered by a wide range of random media can be accounted for by assuming effective source amplitude correlations involving modified Bessel functions Kv. We investigate how such correlations can be derived from physical models of stochastic scattering
Duchateau, Emmanuel; Auty, David; Mothe, Frédéric; Longuetaud, Fleur; Ung, Chhun Huor; Achim, Alexis
2015-01-01
The branch autonomy principle, which states that the growth of individual branches can be predicted from their morphology and position in the forest canopy irrespective of the characteristics of the tree, has been used to simplify models of branch growth in trees. However, observed changes in allocation priority within trees towards branches growing in light-favoured conditions, referred to as 'Milton's Law of resource availability and allocation,' have raised questions about the applicability of the branch autonomy principle. We present models linking knot ontogeny to the secondary growth of the main stem in black spruce (Picea mariana (Mill.) B.S.P.), which were used to assess the patterns of assimilate allocation over time, both within and between trees. Data describing the annual radial growth of 445 stem rings and the three-dimensional shape of 5,377 knots were extracted from optical scans and X-ray computed tomography images taken along the stems of 10 trees. Total knot to stem area increment ratios (KSR) were calculated for each year of growth, and statistical models were developed to describe the annual development of knot diameter and curvature as a function of stem radial increment, total tree height, stem diameter, and the position of knots along an annual growth unit. KSR varied as a function of tree age and of the height to diameter ratio of the stem, a variable indicative of the competitive status of the tree. Simulations of the development of an individual knot showed that an increase in the stem radial growth rate was associated with an increase in the initial growth of the knot, but also with a shorter lifespan. Our results provide support for 'Milton's Law,' since they indicate that allocation priority is given to locations where the potential return is the highest. The developed models provided realistic simulations of knot morphology within trees, which could be integrated into a functional-structural model of tree growth and above
STEPS: efficient simulation of stochastic reaction–diffusion models in realistic morphologies
Directory of Open Access Journals (Sweden)
Hepburn Iain
2012-05-01
Full Text Available Abstract Background Models of cellular molecular systems are built from components such as biochemical reactions (including interactions between ligands and membrane-bound proteins, conformational changes and active and passive transport. A discrete, stochastic description of the kinetics is often essential to capture the behavior of the system accurately. Where spatial effects play a prominent role the complex morphology of cells may have to be represented, along with aspects such as chemical localization and diffusion. This high level of detail makes efficiency a particularly important consideration for software that is designed to simulate such systems. Results We describe STEPS, a stochastic reaction–diffusion simulator developed with an emphasis on simulating biochemical signaling pathways accurately and efficiently. STEPS supports all the above-mentioned features, and well-validated support for SBML allows many existing biochemical models to be imported reliably. Complex boundaries can be represented accurately in externally generated 3D tetrahedral meshes imported by STEPS. The powerful Python interface facilitates model construction and simulation control. STEPS implements the composition and rejection method, a variation of the Gillespie SSA, supporting diffusion between tetrahedral elements within an efficient search and update engine. Additional support for well-mixed conditions and for deterministic model solution is implemented. Solver accuracy is confirmed with an original and extensive validation set consisting of isolated reaction, diffusion and reaction–diffusion systems. Accuracy imposes upper and lower limits on tetrahedron sizes, which are described in detail. By comparing to Smoldyn, we show how the voxel-based approach in STEPS is often faster than particle-based methods, with increasing advantage in larger systems, and by comparing to MesoRD we show the efficiency of the STEPS implementation. Conclusion STEPS simulates
STEPS: efficient simulation of stochastic reaction–diffusion models in realistic morphologies
2012-01-01
Background Models of cellular molecular systems are built from components such as biochemical reactions (including interactions between ligands and membrane-bound proteins), conformational changes and active and passive transport. A discrete, stochastic description of the kinetics is often essential to capture the behavior of the system accurately. Where spatial effects play a prominent role the complex morphology of cells may have to be represented, along with aspects such as chemical localization and diffusion. This high level of detail makes efficiency a particularly important consideration for software that is designed to simulate such systems. Results We describe STEPS, a stochastic reaction–diffusion simulator developed with an emphasis on simulating biochemical signaling pathways accurately and efficiently. STEPS supports all the above-mentioned features, and well-validated support for SBML allows many existing biochemical models to be imported reliably. Complex boundaries can be represented accurately in externally generated 3D tetrahedral meshes imported by STEPS. The powerful Python interface facilitates model construction and simulation control. STEPS implements the composition and rejection method, a variation of the Gillespie SSA, supporting diffusion between tetrahedral elements within an efficient search and update engine. Additional support for well-mixed conditions and for deterministic model solution is implemented. Solver accuracy is confirmed with an original and extensive validation set consisting of isolated reaction, diffusion and reaction–diffusion systems. Accuracy imposes upper and lower limits on tetrahedron sizes, which are described in detail. By comparing to Smoldyn, we show how the voxel-based approach in STEPS is often faster than particle-based methods, with increasing advantage in larger systems, and by comparing to MesoRD we show the efficiency of the STEPS implementation. Conclusion STEPS simulates models of cellular
STEPS: efficient simulation of stochastic reaction-diffusion models in realistic morphologies.
Hepburn, Iain; Chen, Weiliang; Wils, Stefan; De Schutter, Erik
2012-05-10
Models of cellular molecular systems are built from components such as biochemical reactions (including interactions between ligands and membrane-bound proteins), conformational changes and active and passive transport. A discrete, stochastic description of the kinetics is often essential to capture the behavior of the system accurately. Where spatial effects play a prominent role the complex morphology of cells may have to be represented, along with aspects such as chemical localization and diffusion. This high level of detail makes efficiency a particularly important consideration for software that is designed to simulate such systems. We describe STEPS, a stochastic reaction-diffusion simulator developed with an emphasis on simulating biochemical signaling pathways accurately and efficiently. STEPS supports all the above-mentioned features, and well-validated support for SBML allows many existing biochemical models to be imported reliably. Complex boundaries can be represented accurately in externally generated 3D tetrahedral meshes imported by STEPS. The powerful Python interface facilitates model construction and simulation control. STEPS implements the composition and rejection method, a variation of the Gillespie SSA, supporting diffusion between tetrahedral elements within an efficient search and update engine. Additional support for well-mixed conditions and for deterministic model solution is implemented. Solver accuracy is confirmed with an original and extensive validation set consisting of isolated reaction, diffusion and reaction-diffusion systems. Accuracy imposes upper and lower limits on tetrahedron sizes, which are described in detail. By comparing to Smoldyn, we show how the voxel-based approach in STEPS is often faster than particle-based methods, with increasing advantage in larger systems, and by comparing to MesoRD we show the efficiency of the STEPS implementation. STEPS simulates models of cellular reaction-diffusion systems with complex
Garrido-Baserba, Manel; Sobhani, Reza; Asvapathanagul, Pitiporn; McCarthy, Graham W; Olson, Betty H; Odize, Victory; Al-Omari, Ahmed; Murthy, Sudhir; Nifong, Andrea; Godwin, Johnnie; Bott, Charles B; Stenstrom, Michael K; Shaw, Andrew R; Rosso, Diego
2017-03-15
This research systematically studied the behavior of aeration diffuser efficiency over time, and its relation to the energy usage per diffuser. Twelve diffusers were selected for a one year fouling study. Comprehensive aeration efficiency projections were carried out in two WRRFs with different influent rates, and the influence of operating conditions on aeration diffusers' performance was demonstrated. This study showed that the initial energy use, during the first year of operation, of those aeration diffusers located in high rate systems (with solids retention time - SRT-less than 2 days) increased more than 20% in comparison to the conventional systems (2 > SRT). Diffusers operating for three years in conventional systems presented the same fouling characteristics as those deployed in high rate processes for less than 15 months. A new procedure was developed to accurately project energy consumption on aeration diffusers; including the impacts of operation conditions, such SRT and organic loading rate, on specific aeration diffusers materials (i.e. silicone, polyurethane, EPDM, ceramic). Furthermore, it considers the microbial colonization dynamics, which successfully correlated with the increase of energy consumption (r 2 :0.82 ± 7). The presented energy model projected the energy costs and the potential savings for the diffusers after three years in operation in different operating conditions. Whereas the most efficient diffusers provided potential costs spanning from 4900 USD/Month for a small plant (20 MGD, or 74,500 m 3 /d) up to 24,500 USD/Month for a large plant (100 MGD, or 375,000 m 3 /d), other diffusers presenting less efficiency provided spans from 18,000USD/Month for a small plant to 90,000 USD/Month for large plants. The aim of this methodology is to help utilities gain more insight into process mechanisms and design better energy efficiency strategies at existing facilities to reduce energy consumption. Copyright © 2016 Elsevier Ltd. All
DePalma, Glen; Turnidge, John; Craig, Bruce A
2017-02-01
The determination of diffusion test breakpoints has become a challenging issue due to the increasing resistance of microorganisms to antibiotics. Currently, the most commonly-used method for determining these breakpoints is the modified error-rate bounded method. Its use has remained widespread despite the introduction of several model-based methods that have been shown superior in terms of precision and accuracy. However, the computational complexities associated with these new approaches has been a significant barrier for clinicians. To remedy this, we developed and examine the utility of a free online software package designed for the determination of diffusion test breakpoints: dBETS (diffusion Breakpoint Estimation Testing Software). This software package allows clinicians to easily analyze data from susceptibility experiments through visualization, error-rate bounded, and model-based approaches. We analyze four publicly available data sets from the Clinical and Laboratory Standards Institute using dBETS. Copyright © 2016 Elsevier Inc. All rights reserved.
A CONTINUOUS MIXTURE OF TENSORS MODEL FOR DIFFUSION-WEIGHTED MR SIGNAL RECONSTRUCTION
Jian, Bing; Vemuri, Baba C.; Özarslan, Evren; Carney, Paul; Mareci, Thomas
2009-01-01
Diffusion MRI is a non-invasive imaging technique that allows the measurement of water molecular diffusion through tissue in vivo. In this paper, we present a novel statistical model which describes the diffusion-attenuated MR signal by the Laplace transform of a probability distribution over symmetric positive definite matrices. Using this new model, we analytically derive a Rigaut-type asymptotic fractal law for the MR signal decay which has been phenomenologically used before. We also develop an efficient scheme for reconstructing the multiple fiber bundles from the DW-MRI measurements. Experimental results on both synthetic and real data sets are presented to show the robustness and accuracy of the proposed algorithms. PMID:19936041
A Series Solution of the Cauchy Problem for Turing Reaction-diffusion Model
Directory of Open Access Journals (Sweden)
L. Päivärinta
2011-12-01
Full Text Available In this paper, the series pattern solution of the Cauchy problem for Turing reaction-diffusion model is obtained by using the homotopy analysis method (HAM. Turing reaction-diffusion model is nonlinear reaction-diffusion system which usually has power-law nonlinearities or may be rewritten in the form of power-law nonlinearities. Using the HAM, it is possible to find the exact solution or an approximate solution of the problem. This technique provides a series of functions which converges rapidly to the exact solution of the problem. The efficiency of the approach will be shown by applying the procedure on two problems. Furthermore, the so-called homotopy-Pade technique (HPT is applied to enlarge the convergence region and rate of solution series given by the HAM.
Basan, Markus; Lenz, Martin; Joanny, Jean-François; Risler, Thomas
2015-01-01
Contact inhibition is the process by which cells switch from a motile growing state to a passive and stabilized state upon touching their neighbors. When two cells touch, an adhesion link is created between them by means of transmembrane E-cadherin proteins. Simultaneously, their actin filaments stop polymerizing in the direction perpendicular to the membrane and reorganize to create an apical belt that colocalizes with the adhesion links. Here, we propose a detailed quantitative model of the role of the cytoplasmic $\\beta$-catenin and $\\alpha$-catenin proteins in this process, treated as a reaction-diffusion system. Upon cell-cell contact, the concentration in $\\alpha$-catenin dimers increases, inhibiting actin branching and thereby reducing cellular motility and expansion pressure. This model provides a mechanism for contact inhibition that could explain previously unrelated experimental findings on the role played by E-cadherin, $\\beta$-catenin and $\\alpha$-catenin in the cellular phenotype and in tumorige...
Comparing finite elements and finite differences for developing diffusive models of glioma growth.
Roniotis, Alexandros; Marias, Kostas; Sakkalis, Vangelis; Stamatakos, Georgios; Zervakis, Michalis
2010-01-01
Glioma is the most aggressive type of brain tumor. Several mathematical models have been developed during the last two decades, towards simulating the mechanisms that govern the development of glioma. The most common models use the diffusion-reaction equation (DRE) for simulating the spatiotemporal variation of tumor cell concentration. The proposed diffusive models have mainly used finite differences (FDs) or finite elements (FEs) for the approximation of the solution of the partial differential DRE. This paper presents experimental results on the comparison of the FEs and FDs, especially focused on the glioma model case. It is studied how the different meshes of brain can affect computational consistency, simulation time and efficiency of the model. The experiments have been studied on a test case, for which there is a known algebraic expression of the solution. Thus, it is possible to calculate the error that the different models yield.
Fluorescence-enhanced optical tomography in small volume: Telegrapher and Diffusion models
Directory of Open Access Journals (Sweden)
Ranadhyr Roy
2011-08-01
Full Text Available Small animal fluorescence-enhanced optical tomography has possibility for restructuring drug discovery and preclinical investigation of drug candidates. However, accurate modeling of photon propagation in small animals is critical to quantitatively obtain accurate tomographic images. The diffusion approximation is commonly used for biomedical optical diagnostic techniques in turbid large media where absorption is low compared to scattering system. Unfortunately, this approximation has significant limitations to accurately predict radiative transport in turbid small media and also in a media where absorption is high compared to scattering systems. A radiative transport equation (RTE is best suited for photon propagation in human tissues. However, such models are quite expensive computationally. To alleviate the problems of the high computational cost of RTE and inadequacies of the diffusion equation in a small volume, we use telegrapher equation (TE in the frequency domain for fluorescence-enhanced optical tomography problems. The telegrapher equation can accurately and efficiently predict ballistic as well as diffusion-limited transport regimes which could simultaneously exist in small animals. The accuracy of telegrapher-based model is tested by comparing with the diffusion-based model using stimulated data in a small volume. This work demonstrates the use of the telegrapher-based model in small animal optical tomography problems.
Kurugol, Sila; Freiman, Moti; Afacan, Onur; Perez-Rossello, Jeannette M; Callahan, Michael J; Warfield, Simon K
2016-08-01
Quantitative diffusion-weighted MR imaging (DW-MRI) of the body enables characterization of the tissue microenvironment by measuring variations in the mobility of water molecules. The diffusion signal decay model parameters are increasingly used to evaluate various diseases of abdominal organs such as the liver and spleen. However, previous signal decay models (i.e., mono-exponential, bi-exponential intra-voxel incoherent motion (IVIM) and stretched exponential models) only provide insight into the average of the distribution of the signal decay rather than explicitly describe the entire range of diffusion scales. In this work, we propose a probability distribution model of incoherent motion that uses a mixture of Gamma distributions to fully characterize the multi-scale nature of diffusion within a voxel. Further, we improve the robustness of the distribution parameter estimates by integrating spatial homogeneity prior into the probability distribution model of incoherent motion (SPIM) and by using the fusion bootstrap solver (FBM) to estimate the model parameters. We evaluated the improvement in quantitative DW-MRI analysis achieved with the SPIM model in terms of accuracy, precision and reproducibility of parameter estimation in both simulated data and in 68 abdominal in-vivo DW-MRIs. Our results show that the SPIM model not only substantially reduced parameter estimation errors by up to 26%; it also significantly improved the robustness of the parameter estimates (paired Student's t-test, p < 0.0001) by reducing the coefficient of variation (CV) of estimated parameters compared to those produced by previous models. In addition, the SPIM model improves the parameter estimates reproducibility for both intra- (up to 47%) and inter-session (up to 30%) estimates compared to those generated by previous models. Thus, the SPIM model has the potential to improve accuracy, precision and robustness of quantitative abdominal DW-MRI analysis for clinical applications
Charge diffusion in the one-dimensional Hubbard model
Steinigeweg, R.; Jin, F; De Raedt, H.; Michielsen, K.; Gemmer, J.
2017-01-01
We study the real-time and real-space dynamics of charge in the one-dimensional Hubbard model in the limit of high temperatures. To this end, we prepare pure initial states with sharply peaked density profiles and calculate the time evolution of these nonequilibrium states, by using numerical forward-propagation approaches to chains as long as 20 sites. For a class of typical states, we find excellent agreement with linear-response theory and unveil the existence of remarkably clean charge di...
An Application of Epidemiological Modeling to Information Diffusion
McCormack, Robert; Salter, William
Messages often spread within a population through unofficial - particularly web-based - media. Such ideas have been termed "memes." To impede the flow of terrorist messages and to promote counter messages within a population, intelligence analysts must understand how messages spread. We used statistical language processing technologies to operationalize "memes" as latent topics in electronic text and applied epidemiological techniques to describe and analyze patterns of message propagation. We developed our methods and applied them to English-language newspapers and blogs in the Arab world. We found that a relatively simple epidemiological model can reproduce some dynamics of observed empirical relationships.
Maxwell's Law Based Models for Liquid and Gas Phase Diffusivities in Variably-Saturated Soil
DEFF Research Database (Denmark)
Mamamoto, Shoichiro; Møldrup, Per; Kawamoto, Ken
2012-01-01
The gas diffusion coefficient (D-s,D-g) and solute diffusion coefficient (D-s,D-l) and their dependencies on fluid content (kappa) (equal to soil-air content theta for D-s,D-g and soil-water content epsilon for D-s,D-l) are controlling factors for gas and solute transport in variably saturated...... soils. In this study, we propose unified, predictive models for D-s,D-g(epsilon) and D-s,D-l(theta) based on modifying and extending the classical Maxwell model at fluid saturation with a fluid-induced reduction term including a percolation threshold (epsilon(th) for D-s,D-g and theta(th) for D......-s,D-l). Different percolation threshold terms adopted from recent studies for gas (D-s,D-g) and solute (D-s,D-l) diffusion were applied. For gas diffusion, epsilon(th) was a function of bulk density (total porosity), while for solute diffusion theta(th) was best described by volumetric content of finer soil...
Parallel acceleration of diffuse scattering model for indoor radio prediction by CUDA
Meng, Xiao; Guo, Li-xin; Tao, Wei
2013-10-01
Radio wave propagation prediction is very important for the design of the mobile communication network. The raytracing algorithm is a commonly used computational method for site-specific prediction of the radio channel characteristics of wireless communication systems. However, it does not consider the diffuse scattering. Therefore, an indoor diffuse scattering model which based on diffuse scattering theory and FDTD is established. The diffuse scattering of indoor walls and ceiling and floor is calculated at a series of discrete time instance in this method. In recent years, the compute unified device architecture (CUDA) of NVIDIA takes advantage of the GPU for parallel computing, and greatly improve the speed of computation. Because there is a large number of data to deal with, in order to reduce the computation time, a GPU-based diffuse scattering model for indoor radio prediction is introduced in this paper, which fully utilizes the parallel processing capabilities of CUDA to further improve the computational efficiency. It can be found that good acceleration effect has been achieved.
Zemp, Roger J.
2013-06-01
Oblique incidence reflectometry (OIR) is an established technique for the estimation of tissue optical properties. However, a sensing footprint of a few transport mean-free paths is often needed when diffusion-regime-based algorithms are used. Smaller-footprint probes require improved light-propagation models and inversion schemes for diffuse reflectance close to the point of entry but might enable micro-endoscopic form factors for clinical assessments of cancers and precancers. The phase-function corrected diffusion theory presented by Vitkin et al. [Nat. Commun. 2, 587 (2011)] to the case of pencil beams obliquely incident on a semi-infinite turbid medium is extended. The model requires minimal computational resources and offers improved accuracy over more traditional diffusion-theory approximations models when validated against Monte Carlo simulations. The computationally efficient nature of the models lends itself to rapid fitting procedures for inverse problems. The analytical model is used in a nonlinear fitting algorithm to demonstrate the recovery of optical properties using a measurement footprint that is significantly smaller than needed in previous diffusion-regime OIR methods.
Theoretical model estimation of guest diffusion in Metal-Organic Frameworks (MOFs)
Zheng, Bin
2015-08-11
Characterizing molecule diffusion in nanoporous matrices is critical to understanding the novel chemical and physical properties of metal-organic frameworks (MOFs). In this paper, we developed a theoretical model to fastly and accurately compute the diffusion rate of guest molecules in a zeolitic imidazolate framework-8 (ZIF-8). The ideal gas or equilibrium solution diffusion model was modified to contain the effect of periodical media via introducing the possibility of guests passing through the framework gate. The only input in our model is the energy barrier of guests passing through the MOF’s gate. Molecular dynamics (MD) methods were employed to gather the guest density profile, which then was used to deduce the energy barrier values. This produced reliable results that require a simulation time of 5 picoseconds, which is much shorter when using pure MD methods (in the billisecond scale) . Also, we used density functional theory (DFT) methods to obtain the energy profile of guests passing through gates, as this does not require specification of a force field for the MOF degrees of freedom. In the DFT calculation, we only considered one gate of MOFs each time; as this greatly reduced the computational cost. Based on the obtained energy barrier values we computed the diffusion rate of alkane and alcohol in ZIF-8 using our model, which was in good agreement with experimental test results and the calculation values from standard MD model. Our model shows the advantage of obtaining accurate diffusion rates for guests in MOFs for a lower computational cost and shorter calculation time. Thus, our analytic model calculation is especially attractive for high-throughput computational screening of the dynamic performance of guests in a framework.
Hwang, Hyoun-Tae; Jeen, Sung-Wook; Sudicky, Edward A; Illman, Walter A
2015-01-01
The applicability of a newly-developed chain-decay multispecies model (CMM) was validated by obtaining kinetic rate constants and branching ratios along the reaction pathways of trichloroethene (TCE) reduction by zero-valent iron (ZVI) from column experiments. Changes in rate constants and branching ratios for individual reactions for degradation products over time for two columns under different geochemical conditions were examined to provide ranges of those parameters expected over the long-term. As compared to the column receiving deionized water, the column receiving dissolved CaCO3 showed higher mean degradation rates for TCE and all of its degradation products. However, the column experienced faster reactivity loss toward TCE degradation due to precipitation of secondary carbonate minerals, as indicated by a higher value for the ratio of maximum to minimum TCE degradation rate observed over time. From the calculated branching ratios, it was found that TCE and cis-dichloroethene (cis-DCE) were dominantly dechlorinated to chloroacetylene and acetylene, respectively, through reductive elimination for both columns. The CMM model, validated by the column test data in this study, provides a convenient tool to determine simultaneously the critical design parameters for permeable reactive barriers and natural attenuation such as rate constants and branching ratios. Copyright © 2015 Elsevier B.V. All rights reserved.
Hwang, Hyoun-Tae; Jeen, Sung-Wook; Sudicky, Edward A.; Illman, Walter A.
2015-06-01
The applicability of a newly-developed chain-decay multispecies model (CMM) was validated by obtaining kinetic rate constants and branching ratios along the reaction pathways of trichloroethene (TCE) reduction by zero-valent iron (ZVI) from column experiments. Changes in rate constants and branching ratios for individual reactions for degradation products over time for two columns under different geochemical conditions were examined to provide ranges of those parameters expected over the long-term. As compared to the column receiving deionized water, the column receiving dissolved CaCO3 showed higher mean degradation rates for TCE and all of its degradation products. However, the column experienced faster reactivity loss toward TCE degradation due to precipitation of secondary carbonate minerals, as indicated by a higher value for the ratio of maximum to minimum TCE degradation rate observed over time. From the calculated branching ratios, it was found that TCE and cis-dichloroethene (cis-DCE) were dominantly dechlorinated to chloroacetylene and acetylene, respectively, through reductive elimination for both columns. The CMM model, validated by the column test data in this study, provides a convenient tool to determine simultaneously the critical design parameters for permeable reactive barriers and natural attenuation such as rate constants and branching ratios.
Müller, Arne; Jovanov, Vladislav; Wagner, Veit
2017-07-01
This work shows an analytical semiconductor diode model suitable to describe photovoltaic cells for a large variety of physical parameters, such as mobility of charge carriers and illumination intensity. The model is based on a simplified drift-diffusion calculation assuming a constant electric field and a linear increasing current inside the semiconductor layer. The model also accounts for recombination processes in the active and contact layers. Organic and inorganic solar cells can be accurately modeled, which is confirmed by comparison of experimental data and full drift-diffusion calculations with the same physical parameters. In addition, this model shows how physical properties can be directly extracted from the crossing point often found in J-V characteristics.
Energy Technology Data Exchange (ETDEWEB)
Karma, A.; Rappel, W.J. [Northeastern Univ., Boston, MA (United States); Fuh, B.C.; Trivedi, R. [Ames Lab., IA (United States)]|[Iowa State Univ., Ames, IA (United States). Dept. of Materials Science and Engineering
1998-05-01
The formation of banded microstructure in peritectic systems is examined theoretically in both diffusive and convective regimes. A rigorous model is developed in the diffusive regime that describes the non-steady-state growth of alternate solid {alpha} and {beta} phase bands with a planar solid-liquid interface. The model is extended to incorporate the effect of convection by assuming that solute diffusion takes place within a boundary layer of constant thickness, with a uniform composition in the mixed liquid zone outside this layer. The model predicts that convection effects in a semi-infinite sample narrow the composition range over which extended banding can occur, and the spacing of bands is reduced compared to the diffusive growth model. In a finite length sample, convection is shown to lead only to the transient formation of bands. In this transient banding regime, only a few bands with a variable width are formed, and this transient banding process can occur over a wide range of compositions inside the two-phase peritectic region. Directional solidification studies in the Pb-Bi system show transient bands and agree qualitatively with these predictions. However, the basic mechanism of band formation observed in this system is found to be significantly different from the one assumed in the model. A new mechanism of banding is proposed in which continuous growth of both phases is present instead of nucleation at the boundary of the pre-existing phase. This mechanism yields an oscillatory structure with a shorter spatial periodicity than the band spacing predicted by the purely diffusive or boundary layer convective models.
Data assimilation experiments using diffusive back-and-forth nudging for the NEMO ocean model
Ruggiero, G. A.; Ourmières, Y.; Cosme, E.; Blum, J.; Auroux, D.; Verron, J.
2015-04-01
The diffusive back-and-forth nudging (DBFN) is an easy-to-implement iterative data assimilation method based on the well-known nudging method. It consists of a sequence of forward and backward model integrations, within a given time window, both of them using a feedback term to the observations. Therefore, in the DBFN, the nudging asymptotic behaviour is translated into an infinite number of iterations within a bounded time domain. In this method, the backward integration is carried out thanks to what is called backward model, which is basically the forward model with reversed time step sign. To maintain numeral stability, the diffusion terms also have their sign reversed, giving a diffusive character to the algorithm. In this article the DBFN performance to control a primitive equation ocean model is investigated. In this kind of model non-resolved scales are modelled by diffusion operators which dissipate energy that cascade from large to small scales. Thus, in this article, the DBFN approximations and their consequences for the data assimilation system set-up are analysed. Our main result is that the DBFN may provide results which are comparable to those produced by a 4Dvar implementation with a much simpler implementation and a shorter CPU time for convergence. The conducted sensitivity tests show that the 4Dvar profits of long assimilation windows to propagate surface information downwards, and that for the DBFN, it is worth using short assimilation windows to reduce the impact of diffusion-induced errors. Moreover, the DBFN is less sensitive to the first guess than the 4Dvar.
Bos, Charles S.
2008-01-01
When analysing the volatility related to high frequency financial data, mostly non-parametric approaches based on realised or bipower variation are applied. This article instead starts from a continuous time diffusion model and derives a parametric analog at high frequency for it, allowing
Limiting experiments for panel-data and jump-diffusion models
Becheri, I.G.
2012-01-01
This work concerns the theory of limiting experiments and its use in econometrics. In Chapter 2, we consider jump-diffusion models and we compare, by means of the limiting experiment, the statistical information contained in continuous-time observations with that contained in discrete-time
Efficient approach to nucleation and growth dynamics : Stationary diffusion flux model
Van Putten, D.S.; Kalikmanov, V.I.
2009-01-01
A new model describing the evolution of clusters in the processes of nucleation and growth is proposed. The diffusion flux in the nonstationary Fokker–Planck equation with an unknown distribution function is approximated by the closed form expression containing the steady-state solution of the
van Putten, D.S.; van Putten, Dennis S.; Kalikmanov, Vitaly I.
2009-01-01
A new model describing the evolution of clusters in the processes of nucleation and growth is proposed. The diffusion flux in the nonstationary Fokker–Planck equation with an unknown distribution function is approximated by the closed form expression containing the steady-state solution of the
Numerical method for a 2D drift diffusion model arising in strained n ...
Indian Academy of Sciences (India)
Abstract. This paper reports the calculation of electron transport in metal oxide semiconductor field effects transistors (MOSFETs) with biaxially tensile strained silicon channel. The calculation is formulated based on two-dimensional drift diffusion model (DDM) including strain effects. The carrier mobility dependence on the ...
Numerical method for a 2D drift diffusion model arising in strained n ...
Indian Academy of Sciences (India)
This paper reports the calculation of electron transport in metal oxide semiconductor field effects transistors (MOSFETs) with biaxially tensile strained silicon channel. The calculation is formulated based on two-dimensional drift diffusion model (DDM) including strain effects. The carrier mobility dependence on the lateral and ...
Kutner, R.; Beijeren, H. van
1987-01-01
An approximate theory is developed for tracer diffusion in rectangular lattice gas models with anisotropic jump rates to neighboring unoccupied sites in different directions. Comparison with Monte Carlo simulations on quadratic lattices with several ratios for the jump rates in orthogonal directions
Thieulot, C; Janssen, LPBM; Espanol, P
A previously formulated smoothed particle hydrodynamics model for a phase separating mixture is tested for the case when viscous processes are negligible and only mass and energy diffusive processes take place. We restrict ourselves to the case of a binary mixture that can exhibit liquid-liquid
DEFF Research Database (Denmark)
Scheel Larsen, Poul; Riisgård, H.U.
1997-01-01
-feeders, the polychaete Nereis diversicolor and the ascidian Ciona intestinalis, respectively. The model is based on sinks located at inhalant openings and Fick's law with an effective diffusivity that decreases with distance above the bottom due to the biomixing generated by exhalant and inhalant feeding currents. For N...
Directory of Open Access Journals (Sweden)
Sikiru Adigun Sanni
2009-05-01
Full Text Available In this article, we present a strongly coupled quasilinear parabolic combustion model with unbounded thermal conductivity and reactant diffusivity in arbitrary non-smooth domains. A priori estimates are obtained, and the existence of a unique global strong solution is proved using a Banach fixed point theorem.
Advection-diffusion sediment models in a two-phase flow perspective
Keetels, G.H.; Goeree, J.C.; van Rhee, C.
2017-01-01
Sediment profiles in open channels are usually predicted by advection-diffusion models. Most basic forms consider the terminal settling velocity of a single particle in still clear water. Alternative forms account for hindered settling at higher concentrations. It is not known, however, how these
Uncovering Implicit Assumptions: A Large-Scale Study on Students' Mental Models of Diffusion
Stains, Marilyne; Sevian, Hannah
2015-01-01
Students' mental models of diffusion in a gas phase solution were studied through the use of the Structure and Motion of Matter (SAMM) survey. This survey permits identification of categories of ways students think about the structure of the gaseous solute and solvent, the origin of motion of gas particles, and trajectories of solute particles in…
DEFF Research Database (Denmark)
Blurton, Steven Paul; Kesselmeier, M.; Gondan, Matthias
2012-01-01
related work on the density of first-passage times [Navarro, D.J., Fuss, I.G. (2009). Fast and accurate calculations for first-passage times in Wiener diffusion models. Journal of Mathematical Psychology, 53, 222-230]. Two representations exist for the distribution, both including infinite series. We...
Coarse-grained model of water diffusion and proton conductivity in hydrated polyelectrolyte membrane
Energy Technology Data Exchange (ETDEWEB)
Lee, Ming-Tsung; Vishnyakov, Aleksey; Neimark, Alexander V., E-mail: aneimark@rutgers.edu [Department of Chemical and Biochemical Engineering, Rutgers, The State University of New Jersey, 98 Brett Road, Piscataway, New Jersey 08854-8058 (United States)
2016-01-07
Using dissipative particle dynamics (DPD), we simulate nanoscale segregation, water diffusion, and proton conductivity in hydrated sulfonated polystyrene (sPS). We employ a novel model [Lee et al. J. Chem. Theory Comput. 11(9), 4395-4403 (2015)] that incorporates protonation/deprotonation equilibria into DPD simulations. The polymer and water are modeled by coarse-grained beads interacting via short-range soft repulsion and smeared charge electrostatic potentials. The proton is introduced as a separate charged bead that forms dissociable Morse bonds with the base beads representing water and sulfonate anions. Morse bond formation and breakup artificially mimics the Grotthuss mechanism of proton hopping between the bases. The DPD model is parameterized by matching the proton mobility in bulk water, dissociation constant of benzenesulfonic acid, and liquid-liquid equilibrium of water-ethylbenzene solutions. The DPD simulations semi-quantitatively predict nanoscale segregation in the hydrated sPS into hydrophobic and hydrophilic subphases, water self-diffusion, and proton mobility. As the hydration level increases, the hydrophilic subphase exhibits a percolation transition from isolated water clusters to a 3D network. The analysis of hydrophilic subphase connectivity and water diffusion demonstrates the importance of the dynamic percolation effect of formation and breakup of temporary junctions between water clusters. The proposed DPD model qualitatively predicts the ratio of proton to water self-diffusion and its dependence on the hydration level that is in reasonable agreement with experiments.
First Principles Diffusion Modeling Final Report CRADA No. TC-1540-98
Energy Technology Data Exchange (ETDEWEB)
delaRubia, T. D. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Foad, M. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Giles, M. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
2017-10-19
The CRADA participants built on the capabilities LLNL had already developed for ab initio diffusion modeling, extending them to higher doping and damage levels, and applying them to improve the understanding of implant and annealing tradeoffs for technology-relevant conditions. The calculation results and some of the simulation capabilities developed here were transferred to Intel and Applied Materials.
Fluorescence-enhanced optical tomography in small volume: Telegrapher and Diffusion models
Ranadhyr Roy
2011-01-01
Small animal fluorescence-enhanced optical tomography has possibility for restructuring drug discovery and preclinical investigation of drug candidates. However, accurate modeling of photon propagation in small animals is critical to quantitatively obtain accurate tomographic images. The diffusion approximation is commonly used for biomedical optical diagnostic techniques in turbid large media where absorption is low compared to scattering system. Unfortunately, this appr...
A model for the pressure dependence of diffusion in condensed matter
Indian Academy of Sciences (India)
Abstract. In the present paper, a model has been used to develop a simple relation to study the pressure dependence of self-diffusion in solids and liquids that has two ad- justable parameters. The computation done in each substance is found to be in very good agreement with the experimental data. It is interesting to note ...
Method of moments approach to pricing double barrier contracts in polynomial jump-diffusion models
Eriksson, B.; Pistorius, M.
2011-01-01
Abstract: We present a method of moments approach to pricing double barrier contracts when the underlying is modelled by a polynomial jump-diffusion. By general principles the price is linked to certain infinite dimensional linear programming problems. Subsequently approximating these by finite
Energy Technology Data Exchange (ETDEWEB)
Weber, Adam
2010-03-05
A macroscopic-modeling methodology to account for the chemical and structural properties of fuel-cell diffusion media is developed. A previous model is updated to include for the first time the use of experimentally measured capillary pressure -- saturation relationships through the introduction of a Gaussian contact-angle distribution into the property equations. The updated model is used to simulate various limiting-case scenarios of water and gas transport in fuel-cell diffusion media. Analysis of these results demonstrate that interfacial conditions are more important than bulk transport in these layers, where the associated mass-transfer resistance is the result of higher capillary pressures at the boundaries and the steepness of the capillary pressure -- saturation relationship. The model is also used to examine the impact of a microporous layer, showing that it dominates the response of the overall diffusion medium. In addition, its primary mass-transfer-related effect is suggested to be limiting the water-injection sites into the more porous gas-diffusion layer.
Diffusion of antimicrobials in multispecies biofilms evaluated in a new biofilm model.
van der Waal, S V; de Almeida, J; Krom, B P; de Soet, J J; Crielaard, W
2017-04-01
To describe the application of a newly-developed in vitro model in which the diffusion of antimicrobials in oral biofilms can be studied. In a flow chamber consisting of three parallel feeding channels connected with each other by eight perpendicular side channels, multispecies biofilms were grown from saliva of a single donor for 48 h. The dimensions of the side channels were 100 μm × 100 μm × 5130 μm (H × W × L). When one or more side channels were filled with biofilm, the biofilms were stained with fluorescent stains. Then, one side-channel biofilm was selected and treated with phosphate buffered saline, 2% sodium hypochlorite (NaOCl), 17% ethylenediaminetetra-acetic acid (EDTA) or modified salt solution (MSS). Diffusion of the irrigants was observed by acquiring fluorescence images at 10× objective every 15 s for 30 min. It was possible to culture biofilms in the narrow (100 μm) channels. The biofilms varied in phenotype. In this model, no diffusion of NaOCl into the biofilms was seen after its application. Seventeen-percentage EDTA only diffused into the biofilm up to 200 μm in 30 min. MSS did diffuse in the biofilm over a distance of 450 μm within 2 min after a single application. This new model enables the investigation of the diffusion of antimicrobials in biofilms. Other applications to improve our understanding of the characteristics of biofilms are now possible. © 2016 International Endodontic Journal. Published by John Wiley & Sons Ltd.
Diffusion tensor imaging of renal ischemia reperfusion injury in an experimental model.
Cheung, Jerry S; Fan, Shu Juan; Chow, April M; Zhang, Jingbo; Man, Kwan; Wu, Ed X
2010-06-01
Renal ischemia reperfusion injury (IRI) is a major cause of acute renal failure. It occurs in various clinical settings such as renal transplantation, shock and vascular surgery. Serum creatinine level has been used as an index for estimating the degree of renal functional loss in renal IRI. However, it only evaluates the global renal function. In this study, diffusion tensor imaging (DTI) was used to characterize renal IRI in an experimental rat model. Spin-echo echo-planar DTI with b-value of 300 s/mm(2) and 6 diffusion gradient directions was performed at 7 T in 8 Sprague-Dawley (SD) with 60-min unilateral renal IRI and 8 normal SD rats. Apparent diffusion coefficient (ADC), directional diffusivities and fractional anisotropy (FA) were measured at the acute stage of IRI. The IR-injured animals were also examined by diffusion-weighted imaging with 7 b-values up to 1000 s/mm(2) to estimate true diffusion coefficient (D(true)) and perfusion fraction (P(fraction)) using a bi-compartmental model. ADC of injured renal cortex (1.69 +/- 0.24 x 10(-3) mm(2)/s) was significantly lower (p medulla (1.37 +/- 0.27 x 10(-3) mm(2)/s and 0.28 +/- 0.04, respectively) were significantly less (p medulla (2.01 +/- 0.38 x 10(-3) mm(2)/s and 0.36 +/- 0.04, respectively). The bi-compartmental model analysis revealed the decrease in D(true) and P(fraction) in the IR-injured kidneys. Kidney histology showed widespread cell swelling and erythrocyte congestion in both cortex and medulla, and cell necrosis/apoptosis and cast formation in medulla. These experimental findings demonstrated that DTI can probe both structural and functional information of kidneys following renal IRI.
Ranger, Jochen; Kuhn, Jörg-Tobias; Szardenings, Carsten
2017-05-01
Cognitive psychometric models embed cognitive process models into a latent trait framework in order to allow for individual differences. Due to their close relationship to the response process the models allow for profound conclusions about the test takers. However, before such a model can be used its fit has to be checked carefully. In this manuscript we give an overview over existing tests of model fit and show their relation to the generalized moment test of Newey (Econometrica, 53, 1985, 1047) and Tauchen (J. Econometrics, 30, 1985, 415). We also present a new test, the Hausman test of misspecification (Hausman, Econometrica, 46, 1978, 1251). The Hausman test consists of a comparison of two estimates of the same item parameters which should be similar if the model holds. The performance of the Hausman test is evaluated in a simulation study. In this study we illustrate its application to two popular models in cognitive psychometrics, the Q-diffusion model and the D-diffusion model (van der Maas, Molenaar, Maris, Kievit, & Boorsboom, Psychol Rev., 118, 2011, 339; Molenaar, Tuerlinckx, & van der Maas, J. Stat. Softw., 66, 2015, 1). We also compare the performance of the test to four alternative tests of model fit, namely the M2 test (Molenaar et al., J. Stat. Softw., 66, 2015, 1), the moment test (Ranger et al., Br. J. Math. Stat. Psychol., 2016) and the test for binned time (Ranger & Kuhn, Psychol. Test. Asess. , 56, 2014b, 370). The simulation study indicates that the Hausman test is superior to the latter tests. The test closely adheres to the nominal Type I error rate and has higher power in most simulation conditions. © 2017 The British Psychological Society.
Finite element modeling of 129Xe diffusive gas exchange NMR in the human alveoli
Stewart, Neil J.; Parra-Robles, Juan; Wild, Jim M.
2016-10-01
Existing models of 129Xe diffusive exchange for lung microstructural modeling with time-resolved MR spectroscopy data have considered analytical solutions to one-dimensional, homogeneous models of the lungs with specific assumptions about the alveolar geometry. In order to establish a model system for simulating the effects of physiologically-realistic changes in physical and microstructural parameters on 129Xe exchange NMR, we have developed a 3D alveolar capillary model for finite element analysis. To account for the heterogeneity of the alveolar geometry across the lungs, we have derived realistic geometries for finite element analysis based on 2D histological samples and 3D micro-CT image volumes obtained from ex vivo biopsies of lung tissue from normal subjects and patients with interstitial lung disease. The 3D alveolar capillary model permits investigation of the impact of alveolar geometrical parameters and diffusion and perfusion coefficients on the in vivo measured 129Xe CSSR signal response. The heterogeneity of alveolar microstructure that is accounted for in image-based models resulted in considerable alterations to the shape of the 129Xe diffusive uptake curve when compared to 1D models. Our findings have important implications for the future design and optimization of 129Xe MR experiments and in the interpretation of lung microstructural changes from this data.
Yousefnezhad, Mohsen; Fotouhi, Morteza; Vejdani, Kaveh; Kamali-Zare, Padideh
2016-09-01
We present a universal model of brain tissue microstructure that dynamically links osmosis and diffusion with geometrical parameters of brain extracellular space (ECS). Our model robustly describes and predicts the nonlinear time dependency of tortuosity (λ =√{D /D* } ) changes with very high precision in various media with uniform and nonuniform osmolarity distribution, as demonstrated by previously published experimental data (D = free diffusion coefficient, D* = effective diffusion coefficient). To construct this model, we first developed a multiscale technique for computationally effective modeling of osmolarity in the brain tissue. Osmolarity differences across cell membranes lead to changes in the ECS dynamics. The evolution of the underlying dynamics is then captured by a level set method. Subsequently, using a homogenization technique, we derived a coarse-grained model with parameters that are explicitly related to the geometry of cells and their associated ECS. Our modeling results in very accurate analytical approximation of tortuosity based on time, space, osmolarity differences across cell membranes, and water permeability of cell membranes. Our model provides a unique platform for studying ECS dynamics not only in physiologic conditions such as sleep-wake cycles and aging but also in pathologic conditions such as stroke, seizure, and neoplasia, as well as in predictive pharmacokinetic modeling such as predicting medication biodistribution and efficacy and novel biomolecule development and testing.
Dynamic Analysis of a Reaction-Diffusion Rumor Propagation Model
Zhao, Hongyong; Zhu, Linhe
2016-06-01
The rapid development of the Internet, especially the emergence of the social networks, leads rumor propagation into a new media era. Rumor propagation in social networks has brought new challenges to network security and social stability. This paper, based on partial differential equations (PDEs), proposes a new SIS rumor propagation model by considering the effect of the communication between the different rumor infected users on rumor propagation. The stabilities of a nonrumor equilibrium point and a rumor-spreading equilibrium point are discussed by linearization technique and the upper and lower solutions method, and the existence of a traveling wave solution is established by the cross-iteration scheme accompanied by the technique of upper and lower solutions and Schauder’s fixed point theorem. Furthermore, we add the time delay to rumor propagation and deduce the conditions of Hopf bifurcation and stability switches for the rumor-spreading equilibrium point by taking the time delay as the bifurcation parameter. Finally, numerical simulations are performed to illustrate the theoretical results.
Stability Analysis of a Reaction-Diffusion System Modeling Atherogenesis
Ibragimov, Akif
2010-01-01
This paper presents a linear, asymptotic stability analysis for a reaction-diffusionconvection system modeling atherogenesis, the initiation of atherosclerosis, as an inflammatory instability. Motivated by the disease paradigm articulated by Ross, atherogenesis is viewed as an inflammatory spiral with a positive feedback loop involving key cellular and chemical species interacting and reacting within the intimal layer of muscular arteries. The inflammatory spiral is initiated as an instability from a healthy state which is defined to be an equilibrium state devoid of certain key inflammatory markers. Disease initiation is studied through a linear, asymptotic stability analysis of a healthy equilibrium state. Various theorems are proved, giving conditions on system parameters guaranteeing stability of the health state, and a general framework is developed for constructing perturbations from a healthy state that exhibit blow-up, which are interpreted as corresponding to disease initiation. The analysis reveals key features that arterial geometry, antioxidant levels, and the source of inflammatory components (through coupled third-kind boundary conditions or through body sources) play in disease initiation. © 2010 Society for Industrial and Applied Mathematics.
DEFF Research Database (Denmark)
Chamindu, Deepagoda; Møldrup, Per; Schjønning, Per
2012-01-01
Soil-gas diffusivity (Dp/Do) and its dependency on soil matric potential (ψ) is important when taking regulative measures (based on accurate predictions) for climate gas emissions and also risk-mitigating measures (based on upper-limit predictions) of gaseous-phase contaminant emissions. Useful...... that accounts for water blockage. The X–pF relation can be linked to drained pore size to explain the lower probability of the larger but far fewer air-filled pores at lower pF effectively interconnecting and promoting gas diffusion. The model with X* = 2 and A = 0.5 proved promising for generalizing Dp...
Diffusion Model Applied to Postfeeding Larval Dispersal in Blowflies (Diptera: Calliphoridae
Directory of Open Access Journals (Sweden)
Bassanezi RC
1997-01-01
Full Text Available This paper presents a diffusion model of larval dispersal especifically designed to account for particular aspects of postfeeding larval dispersal from the food source in organisms such as blowflies. In these organisms the dispersal of immatures includes two groups of individuals, those that are actively migrating and those that have initiated the pupation process. The classical diffusion equation in one dimension was modified to incorporate a function which describes the burying of larvae to become pupae. The analytical solution of this equation predicts oscillatory and monotonic dispersal behaviors, which are observed in experimental populations of blowfly species
Mathematical modelling of pasta dough dynamic viscosity, thermal conductivity and diffusivity
Directory of Open Access Journals (Sweden)
Andrei Ionuţ SIMION
2015-08-01
Full Text Available This work aimed to study the mathematical variation of three main thermodynamic properties (dynamic viscosity, thermal conductivity and thermal diffusivity of pasta dough obtained by mixing wheat semolina and water with dough humidity and deformation speed (for dynamic viscosity, respectively with dough humidity and temperature (for thermal diffusivity and conductivity. The realized regression analysis of existing graphical data led to the development of mathematical models with a high degree of accuracy. The employed statistical tests (least squares, relative error and analysis of variance revealed that the obtained equations are able to describe and predict the tendency of the dough thermodynamic properties.
Modeling diffusion control on organic matter decomposition in unsaturated soil pore space
Vogel, Laure; Pot, Valérie; Garnier, Patricia; Vieublé-Gonod, Laure; Nunan, Naoise; Raynaud, Xavier; Chenu, Claire
2014-05-01
Soil Organic Matter decomposition is affected by soil structure and water content, but field and laboratory studies about this issue conclude to highly variable outcomes. Variability could be explained by the discrepancy between the scale at which key processes occur and the measurements scale. We think that physical and biological interactions driving carbon transformation dynamics can be best understood at the pore scale. Because of the spatial disconnection between carbon sources and decomposers, the latter rely on nutrient transport unless they can actively move. In hydrostatic case, diffusion in soil pore space is thus thought to regulate biological activity. In unsaturated conditions, the heterogeneous distribution of water modifies diffusion pathways and rates, thus affects diffusion control on decomposition. Innovative imaging and modeling tools offer new means to address these effects. We have developed a new model based on the association between a 3D Lattice-Boltzmann Model and an adimensional decomposition module. We designed scenarios to study the impact of physical (geometry, saturation, decomposers position) and biological properties on decomposition. The model was applied on porous media with various morphologies. We selected three cubic images of 100 voxels side from µCT-scanned images of an undisturbed soil sample at 68µm resolution. We used LBM to perform phase separation and obtained water phase distributions at equilibrium for different saturation indices. We then simulated the diffusion of a simple soluble substrate (glucose) and its consumption by bacteria. The same mass of glucose was added as a pulse at the beginning of all simulations. Bacteria were placed in few voxels either regularly spaced or concentrated close to or far from the glucose source. We modulated physiological features of decomposers in order to weight them against abiotic conditions. We could evidence several effects creating unequal substrate access conditions for
Coulomb branch localization in quiver quantum mechanics
Energy Technology Data Exchange (ETDEWEB)
Ohta, Kazutoshi; Sasai, Yuya [Institute of Physics, Meiji Gakuin University,1518 Kamikurata-cho, Yokohama, 244-8539 (Japan)
2016-02-16
We show how to exactly calculate the refined indices of N=4U(1)×U(N) supersymmetric quiver quantum mechanics in the Coulomb branch by using the localization technique. The Coulomb branch localization is discussed from the viewpoint of both non-linear and gauged linear sigma models. A classification of fixed points in the Coulomb branch differs from one in the Higgs branch, but the derived indices completely agree with the results which were obtained by the localization in the Higgs branch. In the Coulomb branch localization, the refined indices can be written as a summation over different sets of the Coulomb branch fixed points. We also discuss a space-time picture of the fixed points in the Coulomb branch.
Energy Technology Data Exchange (ETDEWEB)
Berlowitz, D.R.
1996-11-01
In the last few decades the negative impact by humans on the thin atmospheric layer enveloping the earth, the basis for life on this planet, has increased steadily. In order to halt, or at least slow down this development, the knowledge and study of these anthropogenic influence has to be increased and possible remedies have to be suggested. An important tool for these studies are computer models. With their help the atmospheric system can be approximated and the various processes, which have led to the current situation can be quantified. They also serve as an instrument to assess short or medium term strategies to reduce this human impact. However, to assure efficiency as well as accuracy, a careful analysis of the numerous processes involved in the dispersion of pollutants in the atmosphere is called for. This should help to concentrate on the essentials and also prevent excessive usage of sometimes scarce computing resources. The basis of the presented work is the EUMAC Zooming Model (ETM), and particularly the component calculating the dispersion of pollutants in the atmosphere, the model MARS. The model has two main parts: an explicit solver, where the advection and the horizontal diffusion of pollutants are calculated, and an implicit solution mechanism, allowing the joint computation of the change of concentration due to chemical reactions, coupled with the respective influence of the vertical diffusion of the species. The aim of this thesis is to determine particularly the influence of the horizontal components of the turbulent diffusion on the existing implicit solver of the model. Suggestions for a more comprehensive inclusion of the full three dimensional diffusion operator in the implicit solver are made. This is achieved by an appropriate operator splitting. A selection of numerical approaches to tighten the coupling of the diffusion processes with the calculation of the applied chemical reaction mechanisms are examined. (author) figs., tabs., refs.
A reaction-diffusion model of ROS-induced ROS release in a mitochondrial network.
Directory of Open Access Journals (Sweden)
Lufang Zhou
2010-01-01
Full Text Available Loss of mitochondrial function is a fundamental determinant of cell injury and death. In heart cells under metabolic stress, we have previously described how the abrupt collapse or oscillation of the mitochondrial energy state is synchronized across the mitochondrial network by local interactions dependent upon reactive oxygen species (ROS. Here, we develop a mathematical model of ROS-induced ROS release (RIRR based on reaction-diffusion (RD-RIRR in one- and two-dimensional mitochondrial networks. The nodes of the RD-RIRR network are comprised of models of individual mitochondria that include a mechanism of ROS-dependent oscillation based on the interplay between ROS production, transport, and scavenging; and incorporating the tricarboxylic acid (TCA cycle, oxidative phosphorylation, and Ca(2+ handling. Local mitochondrial interaction is mediated by superoxide (O2.- diffusion and the O2.(--dependent activation of an inner membrane anion channel (IMAC. In a 2D network composed of 500 mitochondria, model simulations reveal DeltaPsi(m depolarization waves similar to those observed when isolated guinea pig cardiomyocytes are subjected to a localized laser-flash or antioxidant depletion. The sensitivity of the propagation rate of the depolarization wave to O(2.- diffusion, production, and scavenging in the reaction-diffusion model is similar to that observed experimentally. In addition, we present novel experimental evidence, obtained in permeabilized cardiomyocytes, confirming that DeltaPsi(m depolarization is mediated specifically by O2.-. The present work demonstrates that the observed emergent macroscopic properties of the mitochondrial network can be reproduced in a reaction-diffusion model of RIRR. Moreover, the findings have uncovered a novel aspect of the synchronization mechanism, which is that clusters of mitochondria that are oscillating can entrain mitochondria that would otherwise display stable dynamics. The work identifies the
Lin, Guoxing
2017-02-01
Pulsed field gradient (PFG) technique is a noninvasive tool, and has been increasingly employed to study anomalous diffusions in Nuclear Magnetic Resonance (NMR) and Magnetic Resonance Imaging (MRI). However, the analysis of PFG anomalous diffusion is much more complicated than normal diffusion. In this paper, a fractal derivative model based modified Gaussian phase distribution method is proposed to describe PFG anomalous diffusion. By using the phase distribution obtained from the effective phase shift diffusion method based on fractal derivatives, and employing some of the traditional Gaussian phase distribution approximation techniques, a general signal attenuation expression for free fractional diffusion is derived. This expression describes a stretched exponential function based attenuation, which is distinct from both the exponential attenuation for normal diffusion obtained from conventional Gaussian phase distribution approximation, and the Mittag-Leffler function based attenuation for anomalous diffusion obtained from fractional derivative. The obtained signal attenuation expression can analyze the finite gradient pulse width (FGPW) effect. Additionally, it can generally be applied to all three types of PFG fractional diffusions classified based on time derivative order α and space derivative order β. These three types of fractional diffusions include time-fractional diffusion with { 0 < α ≤ 2 , β = 2 } , space-fractional diffusion with { α = 1 , 0 < β ≤ 2 } , and general fractional diffusion with { 0 < α , β ≤ 2 } . The results in this paper are consistent with reported results based on effective phase shift diffusion equation method and instantaneous signal attenuation method. This method provides a new, convenient approximation formalism for analyzing PFG anomalous diffusion experiments. The expression that can simultaneously interpret general fractional diffusion and FGPW effect could be especially important in PFG MRI, where the narrow
Modeling of Ni Diffusion Induced Austenite Formation in Ferritic Stainless Steel Interconnects
DEFF Research Database (Denmark)
Chen, Ming; Molin, Sebastian; Zhang, L.
2015-01-01
of the ferritic phase into an austenitic phase in the interface region. This is accompanied with changes in volume and in mechanical and corrosion properties of the IC plates. In this work, kinetic modeling of the inter-diffusion between Ni and FeCr based ferritic stainless steel was conducted, using the CALPHAD......Ferritic stainless steel interconnect plates are widely used in planar solid oxide fuel cell (SOFC) or electrolysis cell (SOEC) stacks. During stack production and operation, nickel from the Ni/YSZ fuel electrode or from the Ni contact component diffuses into the IC plate, causing transformation...... approach with the DICTRA software. The kinetics of inter-diffusion and austenite formation was explored in full detail, as functions of layer thickness, temperature, time, and steel composition. The simulation was further validated by comparing with experimental results. Growth of the austenite phase...
Numerical computation of the linear stability of the diffusion model for crystal growth simulation
Energy Technology Data Exchange (ETDEWEB)
Yang, C.; Sorensen, D.C. [Rice Univ., Houston, TX (United States); Meiron, D.I.; Wedeman, B. [California Institute of Technology, Pasadena, CA (United States)
1996-12-31
We consider a computational scheme for determining the linear stability of a diffusion model arising from the simulation of crystal growth. The process of a needle crystal solidifying into some undercooled liquid can be described by the dual diffusion equations with appropriate initial and boundary conditions. Here U{sub t} and U{sub a} denote the temperature of the liquid and solid respectively, and {alpha} represents the thermal diffusivity. At the solid-liquid interface, the motion of the interface denoted by r and the temperature field are related by the conservation relation where n is the unit outward pointing normal to the interface. A basic stationary solution to this free boundary problem can be obtained by writing the equations of motion in a moving frame and transforming the problem to parabolic coordinates. This is known as the Ivantsov parabola solution. Linear stability theory applied to this stationary solution gives rise to an eigenvalue problem of the form.
Memory Effects and Coverage Dependence of Surface Diffusion in a Model Adsorption System
DEFF Research Database (Denmark)
Vattulainen, Ilpo Tapio; Ying, S. C.; Ala-Nissila, T.
1999-01-01
in tracer and collective diffusion. We show that memory effects can be very pronounced deep inside the ordered phases and in regions close to first and second order phase transition boundaries. Particular attention is paid to the details of the time dependence of memory effects. The memory effect in tracer...... effects can be as large as 50% to the total barrier. For collective diffusion, the role of memory effects is in general less pronounced.......We study the coverage dependence of surface diffusion coefficients for a strongly interacting adsorption system O/W(110) via Monte Carlo simulations of a lattice-gas model. In particular, we consider the nature and emergence of memory effects as contained in the corresponding correlation factors...
Stochastic modeling and simulation of reaction-diffusion system with Hill function dynamics.
Chen, Minghan; Li, Fei; Wang, Shuo; Cao, Young
2017-03-14
Stochastic simulation of reaction-diffusion systems presents great challenges for spatiotemporal biological modeling and simulation. One widely used framework for stochastic simulation of reaction-diffusion systems is reaction diffusion master equation (RDME). Previous studies have discovered that for the RDME, when discretization size approaches zero, reaction time for bimolecular reactions in high dimensional domains tends to infinity. In this paper, we demonstrate that in the 1D domain, highly nonlinear reaction dynamics given by Hill function may also have dramatic change when discretization size is smaller than a critical value. Moreover, we discuss methods to avoid this problem: smoothing over space, fixed length smoothing over space and a hybrid method. Our analysis reveals that the switch-like Hill dynamics reduces to a linear function of discretization size when the discretization size is small enough. The three proposed methods could correctly (under certain precision) simulate Hill function dynamics in the microscopic RDME system.
Density-Corrected Models for Gas Diffusivity and Air Permeability in Unsaturated Soil
DEFF Research Database (Denmark)
Chamindu, Deepagoda; Møldrup, Per; Schjønning, Per
2011-01-01
Accurate prediction of gas diffusivity (Dp/Do) and air permeability (ka) and their variations with air-filled porosity (e) in soil is critical for simulating subsurface migration and emission of climate gases and organic vapors. Gas diffusivity and air permeability measurements from Danish soil p...... concept for gas diffusivity was extended to bimodal (aggregated) media and performed well against data for uncompacted and compacted volcanic ash soil.......Accurate prediction of gas diffusivity (Dp/Do) and air permeability (ka) and their variations with air-filled porosity (e) in soil is critical for simulating subsurface migration and emission of climate gases and organic vapors. Gas diffusivity and air permeability measurements from Danish soil...... profile data (total of 150 undisturbed soil samples) were used to investigate soil type and density effects on the gas transport parameters and for model development. The measurements were within a given range of matric potentials (-10 to -500 cm H2O) typically representing natural field conditions...
Yuvan, Steven; Bier, Martin
2018-02-01
Two decades ago Bak et al. (1997) [3] proposed a reaction-diffusion model to describe market fluctuations. In the model buyers and sellers diffuse from opposite ends of a 1D interval that represents a price range. Trades occur when buyers and sellers meet. We show analytically and numerically that the model well reproduces the square-root relation between traded volumes and price changes that is observed in real-life markets. The result is remarkable as this relation has commonly been explained in terms of more elaborate trader strategies. We furthermore explain why the square-root relation is robust under model modifications and we show how real-life bond market data exhibit the square-root relation.
Bioheat model evaluations of laser effects on tissues: role of water evaporation and diffusion
Nagulapally, Deepthi; Joshi, Ravi P.; Thomas, Robert J.
2011-03-01
A two-dimensional, time-dependent bioheat model is applied to evaluate changes in temperature and water content in tissues subjected to laser irradiation. Our approach takes account of liquid-to-vapor phase changes and a simple diffusive flow of water within the biotissue. An energy balance equation considers blood perfusion, metabolic heat generation, laser absorption, and water evaporation. The model also accounts for the water dependence of tissue properties (both thermal and optical), and variations in blood perfusion rates based on local tissue injury. Our calculations show that water diffusion would reduce the local temperature increases and hot spots in comparison to simple models that ignore the role of water in the overall thermal and mass transport. Also, the reduced suppression of perfusion rates due to tissue heating and damage with water diffusion affect the necrotic depth. Two-dimensional results for the dynamic temperature, water content, and damage distributions will be presented for skin simulations. It is argued that reduction in temperature gradients due to water diffusion would mitigate local refractive index variations, and hence influence the phenomenon of thermal lensing. Finally, simple quantitative evaluations of pressure increases within the tissue due to laser absorption are presented.
Energy Technology Data Exchange (ETDEWEB)
Burkes, Douglas [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Casella, Amanda J. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Gardner, Levi D. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Casella, Andrew M. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Huber, Tanja K. [Technische Universität München, Munich (Germany); Breitkreutz, Harald [Technische Universität München, Munich (Germany)
2015-02-11
The Office of Material Management and Minimization Fuel Thermo-physical Characterization Project at Pacific Northwest National Laboratory (PNNL) is tasked with using PNNL facilities and processes to receive irradiated low enriched uranium-molybdenum fuel plate samples and perform analyses in support of the Office of Material Management and Minimization Reactor Conversion Program. This work is in support of the Fuel Development Pillar that is managed by Idaho National Laboratory. A key portion of the scope associated with this project was to measure the thermal properties of fuel segments harvested from plates that were irradiated in the Advanced Test Reactor. Thermal diffusivity of samples prepared from the fuel segments was measured using laser flash analysis. Two models, one developed by PNNL and the other developed by the Technische Universität München (TUM), were evaluated to extract the thermal diffusivity of the uranium-molybdenum alloy from measurements made on the irradiated, layered composites. The experimental data of the “TC” irradiated fuel segment was evaluated using both models considering a three-layer and five-layer system. Both models are in acceptable agreement with one another and indicate that the zirconium diffusion barrier has a minimal impact on the overall thermal diffusivity of the monolithic U-Mo fuel.
Second generation diffusion model of interacting gravity waves on the surface of deep fluid
Directory of Open Access Journals (Sweden)
A. Pushkarev
2004-01-01
Full Text Available We propose a second generation phenomenological model for nonlinear interaction of gravity waves on the surface of deep water. This model takes into account the effects of non-locality of the original Hasselmann diffusion equation still preserving important properties of the first generation model: physically consistent scaling, adherence to conservation laws and the existence of Kolmogorov-Zakharov solutions. Numerical comparison of both models with the original Hasselmann equation shows that the second generation models improves the angular distribution in the evolving wave energy spectrum.
Trojan War displayed as a full annihilation-diffusion-reaction model
Flores, J. C.
2017-02-01
The diffusive pair annihilation model with embedded topological domains and archaeological data is applied in an analysis of the hypothetical Trojan-Greek war during the late Bronze Age. Estimations of parameter are explicitly made for critical dynamics of the model. In particular, the 8-metre walls of Troy could be viewed as the effective shield that provided the technological difference between the two armies. Suggestively, the numbers in The Iliad are quite sound, being in accord with Lanchester's laws of warfare.
Traveling Wave Solutions of Reaction-Diffusion Equations Arising in Atherosclerosis Models
Directory of Open Access Journals (Sweden)
Narcisa Apreutesei
2014-05-01
Full Text Available In this short review article, two atherosclerosis models are presented, one as a scalar equation and the other one as a system of two equations. They are given in terms of reaction-diffusion equations in an infinite strip with nonlinear boundary conditions. The existence of traveling wave solutions is studied for these models. The monostable and bistable cases are introduced and analyzed.
Diffusive spatio-temporal noise in a first-passage time model for intracellular calcium release
Flegg, Mark B.
2013-01-01
The intracellular release of calcium from the endoplasmic reticulum is controlled by ion channels. The resulting calcium signals exhibit a rich spatio-temporal signature, which originates at least partly from microscopic fluctuations. While stochasticity in the gating transition of ion channels has been incorporated into many models, the distribution of calcium is usually described by deterministic reaction-diffusion equations. Here we test the validity of the latter modeling approach by using two different models to calculate the frequency of localized calcium signals (calcium puffs) from clustered IP3 receptor channels. The complexity of the full calcium system is here limited to the basic opening mechanism of the ion channels and, in the mathematical reduction simplifies to the calculation of a first passage time. Two models are then studied: (i) a hybrid model, where channel gating is treated stochastically, while calcium concentration is deterministic and (ii) a fully stochastic model with noisy channel gating and Brownian calcium ion motion. The second model utilises the recently developed two-regime method [M. B. Flegg, S. J. Chapman, and R. Erban, "The two-regime method for optimizing stochastic reaction-diffusion simulations," J. R. Soc., Interface 9, 859-868 (2012)] in order to simulate a large domain with precision required only near the Ca2+ absorbing channels. The expected time for a first channel opening that results in a calcium puff event is calculated. It is found that for a large diffusion constant, predictions of the interpuff time are significantly overestimated using the model (i) with a deterministic non-spatial calcium variable. It is thus demonstrated that the presence of diffusive noise in local concentrations of intracellular Ca2+ ions can substantially influence the occurrence of calcium signals. The presented approach and results may also be relevant for other cell-physiological first-passage time problems with small ligand concentration
Directory of Open Access Journals (Sweden)
Fatma E. El-Khouly
2017-10-01
Full Text Available Despite decades of clinical trials for diffuse intrinsic pontine glioma (DIPG, patient survival does not exceed 10% at two years post-diagnosis. Lack of benefit from systemic chemotherapy may be attributed to an intact bloodbrain barrier (BBB. We aim to develop a theoretical model including relevant physicochemical properties in order to review whether applied chemotherapeutics are suitable for passive diffusion through an intact BBB or whether local administration via convection-enhanced delivery (CED may increase their therapeutic potential. Physicochemical properties (lipophilicity, molecular weight, and charge in physiological environment of anticancer drugs historically and currently administered to DIPG patients, that affect passive diffusion over the BBB, were included in the model. Subsequently, the likelihood of BBB passage of these drugs was ascertained, as well as their potential for intratumoral administration via CED. As only non-molecularly charged, lipophilic, and relatively small sized drugs are likely to passively diffuse through the BBB, out of 51 drugs modeled, only 8 (15%—carmustine, lomustine, erlotinib, vismodegib, lenalomide, thalidomide, vorinostat, and mebendazole—are theoretically qualified for systemic administration in DIPG. Local administration via CED might create more therapeutic options, excluding only positively charged drugs and drugs that are either prodrugs and/or only available as oral formulation. A wide variety of drugs have been administered systemically to DIPG patients. Our model shows that only few are likely to penetrate the BBB via passive diffusion, which may partly explain the lack of efficacy. Drug distribution via CED is less dependent on physicochemical properties and may increase the therapeutic options for DIPG.