Structure of the hexameric HerA ATPase reveals a mechanism of translocation-coupled DNA-end processing in archaea.

Science.gov (United States)

Rzechorzek, Neil J; Blackwood, John K; Bray, Sian M; Maman, Joseph D; Pellegrini, Luca; Robinson, Nicholas P

2014-11-25

The HerA ATPase cooperates with the NurA nuclease and the Mre11-Rad50 complex for the repair of double-strand DNA breaks in thermophilic archaea. Here we extend our structural knowledge of this minimal end-resection apparatus by presenting the first crystal structure of hexameric HerA. The full-length structure visualizes at atomic resolution the N-terminal HerA-ATP synthase domain and a conserved C-terminal extension, which acts as a physical brace between adjacent protomers. The brace also interacts in trans with nucleotide-binding residues of the neighbouring subunit. Our observations support a model in which the coaxial interaction of the HerA ring with the toroidal NurA dimer generates a continuous channel traversing the complex. HerA-driven translocation would propel the DNA towards the narrow annulus of NurA, leading to duplex melting and nucleolytic digestion. This system differs substantially from the bacterial end-resection paradigms. Our findings suggest a novel mode of DNA-end processing by this integrated archaeal helicase-nuclease machine.

HERA physics

International Nuclear Information System (INIS)

Wolf, G.

1994-02-01

The HERA project (HERA 1981, Wiik 1982, 1992, Voss 1988) was approved in 1984. Operation of HERA for physics started in 1992 with the two large general purpose detectors H1 (1986) and ZEUS (1986) taking data. A third experiment, HERMES (1990), which has been approved recently for the measurement of the nucleon spin structure by colliding the polarized electron beam with a gas jet of polarized nucleons, is under construction. A fourth experiment, HERA-B (HERA-B 1992), which aims at measuring CP violation in the b anti b system by scattering beam protons on a fixed target, is under discussion. These lectures are intended for the newcomer to the field and focus on results obtained by H1 and ZEUS. (orig.)

DEAD-box RNA helicase is dispensable for mitochondrial translation in Trypanosoma brucei

Czech Academy of Sciences Publication Activity Database

Richterová, Lenka; Vávrová, Zuzana; Lukeš, Julius

2011-01-01

Roč. 127, č. 1 (2011), 300-303 ISSN 0014-4894 R&D Projects: GA ČR GA204/09/1667; GA MŠk LC07032; GA MŠk 2B06129 Institutional research plan: CEZ:AV0Z60220518 Keywords : Trypanosoma * Mitochondrial translation * RNA helicase * Cytochrome c oxidase * Mitochondrion Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.122, year: 2011

Experimentation at HERA

International Nuclear Information System (INIS)

1983-10-01

These proceedings contain three articles concerning the physics which can be studied by HERA, which were presented at the named workshop, together with convenor reports on working groups which concern technologies, the intersecting regions, photoproduction at HERA, currents and structure functions, exotic phenomena at HERA, and the use of existing detectors. Finally the experimental halls at HERA are described. Separated abstracts were prepared for the articles in these proceedings. (HSI)

An extended study of prompt photon photoproduction at HERA with k{sub T}-factorization

Energy Technology Data Exchange (ETDEWEB)

Lipatov, A.V.; Malyshev, M.A.; Zotov, N.P. [Moskovskij Gosudarstvennyj Univ., Moscow (Russian Federation). Nauchno-Issledovatel' skij Inst. Yadernoj Fiziki

2013-08-15

We reconsider the prompt photon photoproduction at HERA in the framework of the k{sub T}-factorization QCD approach. The proposed method is based on the O({alpha}{sup 2}{alpha}{sub s}) amplitudes for {gamma}q{yields}{gamma}gq and {gamma}g{sup *}{yields}{gamma}q anti q partonic subprocesses. Additionally, we take into account the O({alpha}{sup 2}{alpha}{sub s}{sup 2}) box contributions {gamma}g{yields}{gamma}g to the production cross sections. The unintegrated (or transverse momentum dependent) parton densities in the proton are determined using Kimber-Martin-Ryskin (KMR) prescription. Our consideration covers both inclusive and jet associated prompt photon photoproduction rates. We find that our numerical predictions agree well with the recent data taken by H1 and ZEUS collaborations at HERA. We demonstrate that the box contributions are sizeable and amount up to {proportional_to}15% of the calculated total cross section.

Translational control by the DEAD Box RNA helicase belle regulates ecdysone-triggered transcriptional cascades.

Directory of Open Access Journals (Sweden)

Robert J Ihry

Full Text Available Steroid hormones act, through their respective nuclear receptors, to regulate target gene expression. Despite their critical role in development, physiology, and disease, however, it is still unclear how these systemic cues are refined into tissue-specific responses. We identified a mutation in the evolutionarily conserved DEAD box RNA helicase belle/DDX3 that disrupts a subset of responses to the steroid hormone ecdysone during Drosophila melanogaster metamorphosis. We demonstrate that belle directly regulates translation of E74A, an ets transcription factor and critical component of the ecdysone-induced transcriptional cascade. Although E74A mRNA accumulates to abnormally high levels in belle mutant tissues, no E74A protein is detectable, resulting in misregulation of E74A-dependent ecdysone response genes. The accumulation of E74A mRNA in belle mutant salivary glands is a result of auto-regulation, fulfilling a prediction made by Ashburner nearly 40 years ago. In this model, Ashburner postulates that, in addition to regulating secondary response genes, protein products of primary response genes like E74A also inhibit their own ecdysone-induced transcription. Moreover, although ecdysone-triggered transcription of E74A appears to be ubiquitous during metamorphosis, belle-dependent translation of E74A mRNA is spatially restricted. These results demonstrate that translational control plays a critical, and previously unknown, role in refining transcriptional responses to the steroid hormone ecdysone.

Hera presentation generator (Poster)

NARCIS (Netherlands)

Frasincar, F.; Houben, G.J.P.M.; Barna, P.; Ellis, A.; Hagino, T.

2005-01-01

Semantic Web Information Systems (SWIS) are Web Information Systems that use Semantic Web technologies. Hera is a model-driven design methodology for SWIS. In Hera, models are represented in RDFS and model instances in RDF. The Hera Presentation Generator (HPG) is an integrated development

The AAA-ATPase NVL2 is a component of pre-ribosomal particles that interacts with the DExD/H-box RNA helicase DOB1

International Nuclear Information System (INIS)

Nagahama, Masami; Yamazoe, Takeshi; Hara, Yoshimitsu; Tani, Katsuko; Tsuji, Akihiko; Tagaya, Mitsuo

2006-01-01

Nuclear VCP/p97-like protein 2 (NVL2) is a member of the chaperone-like AAA-ATPase family with two conserved ATP-binding modules. Our previous studies have shown that NVL2 is localized to the nucleolus by interacting with ribosomal protein L5 and may participate in ribosome synthesis, a process involving various non-ribosomal factors including chaperones and RNA helicases. Here, we show that NVL2 is associated with pre-ribosomal particles in the nucleus. Moreover, we used yeast two-hybrid and co-immunoprecipitation assays to identify an NVL2-interacting protein that could yield insights into NVL2 function in ribosome biogenesis. We found that NVL2 interacts with DOB1, a DExD/H-box RNA helicase, whose yeast homologue functions in a late stage of the 60S subunit synthesis. DOB1 can interact with a second ATP-binding module mutant of NVL2, which shows a dominant negative effect on ribosome synthesis. In contrast, it cannot interact with a first ATP-binding module mutant, which does not show the dominant negative effect. When the dominant negative mutant of NVL2 was overexpressed in cells, DOB1 appeared to remain associated with nuclear pre-ribosomal particles. Such accumulation was not observed upon overexpression of wild-type NVL2 or a nondominant-negative mutant. Taken together, our results suggest that NVL2 might regulate the association/dissociation reaction of DOB1 with pre-ribosomal particles by acting as a molecular chaperone

RNA helicase DDX3 is a regulatory subunit of casein kinase 1 in Wnt-beta-catenin signaling

NARCIS (Netherlands)

Cruciat, C.M.; Dolde, C.; de Groot, R.E.; Ohkawara, B.; Reinhard, C.; Korswagen, H.C.; Niehrs, C.

2013-01-01

Casein kinase 1 (CK1) members play key roles in numerous biological processes. They are considered "rogue" kinases, because their enzymatic activity appears unregulated. Contrary to this notion, we have identified the DEAD-box RNA helicase DDX3 as a regulator of the Wnt-beta-catenin network, where

The DEAD box helicase RDE-12 promotes amplification of RNAi in cytoplasmic foci in C. elegans.

Science.gov (United States)

Yang, Huan; Vallandingham, Jim; Shiu, Philip; Li, Hua; Hunter, Craig P; Mak, Ho Yi

2014-04-14

RNAi is a potent mechanism for downregulating gene expression. Conserved RNAi pathway components are found in animals, plants, fungi, and other eukaryotes. In C. elegans, the RNAi response is greatly amplified by the synthesis of abundant secondary small interfering RNAs (siRNAs). Exogenous double-stranded RNA is processed by Dicer and RDE-1/Argonaute into primary siRNA that guides target mRNA recognition. The RDE-10/RDE-11 complex and the RNA-dependent RNA polymerase RRF-1 then engage the target mRNA for secondary siRNA synthesis. However, the molecular link between primary siRNA production and secondary siRNA synthesis remains largely unknown. Furthermore, it is unclear whether the subcellular sites for target mRNA recognition and degradation coincide with sites where siRNA synthesis and amplification occur. In the C. elegans germline, cytoplasmic P granules at the nuclear pores and perinuclear Mutator foci contribute to target mRNA surveillance and siRNA amplification, respectively. We report that RDE-12, a conserved phenylalanine-glycine (FG) domain-containing DEAD box helicase, localizes in P granules and cytoplasmic foci that are enriched in RSD-6 but are excluded from the Mutator foci. Our results suggest that RDE-12 promotes secondary siRNA synthesis by orchestrating the recruitment of RDE-10 and RRF-1 to primary siRNA-targeted mRNA in distinct cytoplasmic compartments. Copyright © 2014 Elsevier Ltd. All rights reserved.

Comparison of HuRAM+ and HERA for Development of Data Worksheet for Simulator based HERA Databank

International Nuclear Information System (INIS)

Choi, Sunyoung; Jung, Wondea

2013-01-01

We also compared the existing HERA methods and HERA database to select essential data fields. We performed a preliminary study to see the possibility to induce the operator's emergency operating procedure (EOP) noncompliance behaviors under a simulated emergency. The purpose of this paper is to compare the HuRAM + and HERA to obtain an insight into the construction of a data worksheet for a qualitative HERA. In this paper, we performed a case study for applying simulator training data to HuRAM + and HERA. With this insight, as well as the results of the researches mentioned above, we have a plan to develop a systematic and qualitative HERA and a data worksheet for the work. In this paper, we compared HuRAM + and HERA to obtain an insight into the construction of a data worksheet for a qualitative HERA and performed a case study. HERA requires a burden to analyze and input an event data due to too many data fields even though it is well designed to estimate Heaps. It is somewhat more convenient to input data into the HuRAM + ; however, it is difficult to analyze the organization and safety culture factors. We are now trying to develop the framework of a data worksheet for a qualitative HERA based on simulator training data. The purpose of our data worksheet is to provide key information for HEP estimation and to enhance the understanding of an operators' behavior under an off-normal plant status. We aim less encumbered means of obtaining the needed data for HERA by changing the existing data worksheet framework of HuRAM + and HERA and by reducing data fields that require reading the between the lines

DESY: HERA polarization

International Nuclear Information System (INIS)

Anon.

1992-01-01

The new HERA electron-proton collider at DESY in Hamburg achieved the first luminosity for electron-proton collisions on 19 October last year. Only one month later, on 20 November, HERA passed another important milestone with the observation of transverse electron polarization

DESY: HERA polarization

Energy Technology Data Exchange (ETDEWEB)

Anon.

1992-03-15

The new HERA electron-proton collider at DESY in Hamburg achieved the first luminosity for electron-proton collisions on 19 October last year. Only one month later, on 20 November, HERA passed another important milestone with the observation of transverse electron polarization.

DP97, a DEAD box DNA/RNA helicase, is a target gene-selective co-regulator of the constitutive androstane receptor

International Nuclear Information System (INIS)

Kanno, Yuichiro; Serikawa, Takafumi; Inajima, Jun; Inouye, Yoshio

2012-01-01

Highlights: ► DP97 interacts with nuclear receptor CAR. ► DP97 enhances CAR-mediated transcriptional activation. ► DP97 synergistically enhances transactivity of CAR by the co-expression of SRC-1 or PGC1α. ► DP97 is a gene-selective co-activator for hCAR. -- Abstract: The constitutive androstane receptor (CAR) plays a key role in the expression of xenobiotic/steroid and drug metabolizing enzymes and their transporters. In this study, we demonstrated that DP97, a member of the DEAD box DNA/RNA helicase protein family, is a novel CAR-interacting protein. Using HepG2 cells expressing human CAR in the presence of tetracycline, we showed that knockdown of DP97 with small interfering RNAs suppressed tetracycline-inducible mRNA expression of CYP2B6 and UGT1A1 but not CYP3A4. Thus, DP97 was found to be a gene (or promoter)-selective co-activator for hCAR. DP97-mediated CAR transactivation was synergistically enhanced by the co-expression of SRC-1 or PGC1α, therefore it might act as mediator between hCAR and appropriate co-activators.

Three-dimensional structure of N-terminal domain of DnaB helicase and helicase-primase interactions in Helicobacter pylori.

Directory of Open Access Journals (Sweden)

Tara Kashav

2009-10-01

Full Text Available Replication initiation is a crucial step in genome duplication and homohexameric DnaB helicase plays a central role in the replication initiation process by unwinding the duplex DNA and interacting with several other proteins during the process of replication. N-terminal domain of DnaB is critical for helicase activity and for DnaG primase interactions. We present here the crystal structure of the N-terminal domain (NTD of H. pylori DnaB (HpDnaB helicase at 2.2 A resolution and compare the structural differences among helicases and correlate with the functional differences. The structural details of NTD suggest that the linker region between NTD and C-terminal helicase domain plays a vital role in accurate assembly of NTD dimers. The sequence analysis of the linker regions from several helicases reveals that they should form four helix bundles. We also report the characterization of H. pylori DnaG primase and study the helicase-primase interactions, where HpDnaG primase stimulates DNA unwinding activity of HpDnaB suggesting presence of helicase-primase cohort at the replication fork. The protein-protein interaction study of C-terminal domain of primase and different deletion constructs of helicase suggests that linker is essential for proper conformation of NTD to interact strongly with HpDnaG. The surface charge distribution on the primase binding surface of NTDs of various helicases suggests that DnaB-DnaG interaction and stability of the complex is most probably charge dependent. Structure of the linker and helicase-primase interactions indicate that HpDnaB differs greatly from E.coli DnaB despite both belong to gram negative bacteria.

Mitochondrial helicases and mitochondrial genome maintenance

DEFF Research Database (Denmark)

de Souza-Pinto, Nadja C; Aamann, Maria Diget; Kulikowicz, Tomasz

2010-01-01

Helicases are essential enzymes that utilize the energy of nucleotide hydrolysis to drive unwinding of nucleic acid duplexes. Helicases play roles in all aspects of DNA metabolism including DNA repair, DNA replication and transcription. The subcellular locations and functions of several helicases...

What HERA May Provide?

Energy Technology Data Exchange (ETDEWEB)

Jung, Hannes; /DESY; De Roeck, Albert; /CERN; Bartels, Jochen; /Hamburg U., Inst. Theor. Phys. II; Behnke, Olaf; Blumlein, Johannes; /DESY; Brodsky, Stanley; /SLAC /Durham U., IPPP; Cooper-Sarkar, Amanda; /Oxford U.; Deak, Michal; /DESY; Devenish, Robin; /Oxford U.; Diehl, Markus; /DESY; Gehrmann, Thomas; /Zurich U.; Grindhammer, Guenter; /Munich, Max Planck Inst.; Gustafson, Gosta; /CERN /Lund U., Dept. Theor. Phys.; Khoze, Valery; /Durham U., IPPP; Knutsson, Albert; /DESY; Klein, Max; /Liverpool U.; Krauss, Frank; /Durham U., IPPP; Kutak, Krzysztof; /DESY; Laenen, Eric; /NIKHEF, Amsterdam; Lonnblad, Leif; /Lund U., Dept. Theor. Phys.; Motyka, Leszek; /Hamburg U., Inst. Theor. Phys. II /Birmingham U. /Southern Methodist U. /DESY /Piemonte Orientale U., Novara /CERN /Paris, LPTHE /Hamburg U. /Penn State U.

2011-11-10

More than 100 people participated in a discussion session at the DIS08 workshop on the topic What HERA may provide. A summary of the discussion with a structured outlook and list of desirable measurements and theory calculations is given. The HERA accelerator and the HERA experiments H1, HERMES and ZEUS stopped running in the end of June 2007. This was after 15 years of very successful operation since the first collisions in 1992. A total luminosity of {approx} 500 pb{sup -1} has been accumulated by each of the collider experiments H1 and ZEUS. During the years the increasingly better understood and upgraded detectors and HERA accelerator have contributed significantly to this success. The physics program remains in full swing and plenty of new results were presented at DIS08 which are approaching the anticipated final precision, fulfilling and exceeding the physics plans and the previsions of the upgrade program. Most of the analyses presented at DIS08 were still based on the so called HERA I data sample, i.e. data taken until 2000, before the shutdown for the luminosity upgrade. This sample has an integrated luminosity of {approx} 100 pb{sup -1}, and the four times larger statistics sample from HERA II is still in the process of being analyzed.

DESY: focuses on HERA

Energy Technology Data Exchange (ETDEWEB)

Anon.

1992-12-15

On 1 October, a special 'FestKolloquium' at DESY marked the official start of the research programme at the new HERA electron-proton collider, which began operations earlier this year. The timing could not have been better, as HERA performance had improved by a factor of ten during the two weeks beforehand. More than 600 guests assembled in one of the big halls previously used for assembly of major components for HERA experiments.

DESY: focuses on HERA

International Nuclear Information System (INIS)

Anon.

1992-01-01

On 1 October, a special 'FestKolloquium' at DESY marked the official start of the research programme at the new HERA electron-proton collider, which began operations earlier this year. The timing could not have been better, as HERA performance had improved by a factor of ten during the two weeks beforehand. More than 600 guests assembled in one of the big halls previously used for assembly of major components for HERA experiments

The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans.

Science.gov (United States)

Tabara, Hiroaki; Yigit, Erbay; Siomi, Haruhiko; Mello, Craig C

2002-06-28

Double-stranded (ds) RNA induces potent gene silencing, termed RNA interference (RNAi). At an early step in RNAi, an RNaseIII-related enzyme, Dicer (DCR-1), processes long-trigger dsRNA into small interfering RNAs (siRNAs). DCR-1 is also required for processing endogenous regulatory RNAs called miRNAs, but how DCR-1 recognizes its endogenous and foreign substrates is not yet understood. Here we show that the C. elegans RNAi pathway gene, rde-4, encodes a dsRNA binding protein that interacts during RNAi with RNA identical to the trigger dsRNA. RDE-4 protein also interacts in vivo with DCR-1, RDE-1, and a conserved DExH-box helicase. Our findings suggest a model in which RDE-4 and RDE-1 function together to detect and retain foreign dsRNA and to present this dsRNA to DCR-1 for processing.

Motif III in superfamily 2 "helicases" helps convert the binding energy of ATP into a high-affinity RNA binding site in the yeast DEAD-box protein Ded1.

Science.gov (United States)

Banroques, Josette; Doère, Monique; Dreyfus, Marc; Linder, Patrick; Tanner, N Kyle

2010-03-05

Motif III in the putative helicases of superfamily 2 is highly conserved in both its sequence and its structural context. It typically consists of the sequence alcohol-alanine-alcohol (S/T-A-S/T). Historically, it was thought to link ATPase activity with a "helicase" strand displacement activity that disrupts RNA or DNA duplexes. DEAD-box proteins constitute the largest family of superfamily 2; they are RNA-dependent ATPases and ATP-dependent RNA binding proteins that, in some cases, are able to disrupt short RNA duplexes. We made mutations of motif III (S-A-T) in the yeast DEAD-box protein Ded1 and analyzed in vivo phenotypes and in vitro properties. Moreover, we made a tertiary model of Ded1 based on the solved structure of Vasa. We used Ded1 because it has relatively high ATPase and RNA binding activities; it is able to displace moderately stable duplexes at a large excess of substrate. We find that the alanine and the threonine in the second and third positions of motif III are more important than the serine, but that mutations of all three residues have strong phenotypes. We purified the wild-type and various mutants expressed in Escherichia coli. We found that motif III mutations affect the RNA-dependent hydrolysis of ATP (k(cat)), but not the affinity for ATP (K(m)). Moreover, mutations alter and reduce the affinity for single-stranded RNA and subsequently reduce the ability to disrupt duplexes. We obtained intragenic suppressors of the S-A-C mutant that compensate for the mutation by enhancing the affinity for ATP and RNA. We conclude that motif III and the binding energy of gamma-PO(4) of ATP are used to coordinate motifs I, II, and VI and the two RecA-like domains to create a high-affinity single-stranded RNA binding site. It also may help activate the beta,gamma-phosphoanhydride bond of ATP. (c) 2009 Elsevier Ltd. All rights reserved.

DP97, a DEAD box DNA/RNA helicase, is a target gene-selective co-regulator of the constitutive androstane receptor

Energy Technology Data Exchange (ETDEWEB)

Kanno, Yuichiro, E-mail: ykanno@phar.toho-u.ac.jp [Faculty of Pharmaceutical Sciences, Toho University, Chiba (Japan); Serikawa, Takafumi; Inajima, Jun; Inouye, Yoshio [Faculty of Pharmaceutical Sciences, Toho University, Chiba (Japan)

2012-09-14

Highlights: Black-Right-Pointing-Pointer DP97 interacts with nuclear receptor CAR. Black-Right-Pointing-Pointer DP97 enhances CAR-mediated transcriptional activation. Black-Right-Pointing-Pointer DP97 synergistically enhances transactivity of CAR by the co-expression of SRC-1 or PGC1{alpha}. Black-Right-Pointing-Pointer DP97 is a gene-selective co-activator for hCAR. -- Abstract: The constitutive androstane receptor (CAR) plays a key role in the expression of xenobiotic/steroid and drug metabolizing enzymes and their transporters. In this study, we demonstrated that DP97, a member of the DEAD box DNA/RNA helicase protein family, is a novel CAR-interacting protein. Using HepG2 cells expressing human CAR in the presence of tetracycline, we showed that knockdown of DP97 with small interfering RNAs suppressed tetracycline-inducible mRNA expression of CYP2B6 and UGT1A1 but not CYP3A4. Thus, DP97 was found to be a gene (or promoter)-selective co-activator for hCAR. DP97-mediated CAR transactivation was synergistically enhanced by the co-expression of SRC-1 or PGC1{alpha}, therefore it might act as mediator between hCAR and appropriate co-activators.

Physics at HERA

International Nuclear Information System (INIS)

Dainton, J.B.

1990-06-01

The possibilities for new and exciting physics at the electron-proton (ep) collider HERA are discussed. Emphasis is placed on topics where the high energy ep physics possible will provide both new measurements of Standard Model parameters and unique searches for new phenomena, and attention is drawn to the contrasting features of the detectors in the two major HERA experiments, Hl and Zeus. (author)

DEAD-Box RNA Helicases are among the Constituents of the Tobacco Pollen mRNA Storing Bodies

Czech Academy of Sciences Publication Activity Database

Hafidh, Said; Potěšil, D.; Zdráhal, Z.; Honys, David

2013-01-01

Roč. 1, č. 3 (2013) ISSN 2329-9029 R&D Projects: GA ČR GPP501/11/P321; GA ČR(CZ) GAP501/11/1462; GA MŠk(CZ) ED1.1.00/02.0068; GA MŠk(CZ) LD13049 Institutional support: RVO:61389030 Keywords : Translation * mRNA storage * RNA helicase Subject RIV: EB - Genetics ; Molecular Biology

DNA-conjugated gold nanoparticles based colorimetric assay to assess helicase activity: a novel route to screen potential helicase inhibitors

Science.gov (United States)

Deka, Jashmini; Mojumdar, Aditya; Parisse, Pietro; Onesti, Silvia; Casalis, Loredana

2017-03-01

Helicase are essential enzymes which are widespread in all life-forms. Due to their central role in nucleic acid metabolism, they are emerging as important targets for anti-viral, antibacterial and anti-cancer drugs. The development of easy, cheap, fast and robust biochemical assays to measure helicase activity, overcoming the limitations of the current methods, is a pre-requisite for the discovery of helicase inhibitors through high-throughput screenings. We have developed a method which exploits the optical properties of DNA-conjugated gold nanoparticles (AuNP) and meets the required criteria. The method was tested with the catalytic domain of the human RecQ4 helicase and compared with a conventional FRET-based assay. The AuNP-based assay produced similar results but is simpler, more robust and cheaper than FRET. Therefore, our nanotechnology-based platform shows the potential to provide a useful alternative to the existing conventional methods for following helicase activity and to screen small-molecule libraries as potential helicase inhibitors.

Viral hijacking of a replicative helicase loader and its implications for helicase loading control and phage replication

Energy Technology Data Exchange (ETDEWEB)

Hood, Iris V.; Berger, James M.

2016-05-31

Replisome assembly requires the loading of replicative hexameric helicases onto origins by AAA+ ATPases. How loader activity is appropriately controlled remains unclear. Here, we use structural and biochemical analyses to establish how an antimicrobial phage protein interferes with the function of theStaphylococcus aureusreplicative helicase loader, DnaI. The viral protein binds to the loader’s AAA+ ATPase domain, allowing binding of the host replicative helicase but impeding loader self-assembly and ATPase activity. Close inspection of the complex highlights an unexpected locus for the binding of an interdomain linker element in DnaI/DnaC-family proteins. We find that the inhibitor protein is genetically coupled to a phage-encoded homolog of the bacterial helicase loader, which we show binds to the host helicase but not to the inhibitor itself. These findings establish a new approach by which viruses can hijack host replication processes and explain how loader activity is internally regulated to prevent aberrant auto-association.

Molecular determinants of nucleolar translocation of RNA helicase A

International Nuclear Information System (INIS)

Liu Zhe; Kenworthy, Rachael; Green, Christopher; Tang, Hengli

2007-01-01

RNA helicase A (RHA) is a member of the DEAH-box family of DNA/RNA helicases involved in multiple cellular processes and the life cycles of many viruses. The subcellular localization of RHA is dynamic despite its steady-state concentration in the nucleoplasm. We have previously shown that it shuttles rapidly between the nucleus and the cytoplasm by virtue of a bidirectional nuclear transport domain (NTD) located in its carboxyl terminus. Here, we investigate the molecular determinants for its translocation within the nucleus and, more specifically, its redistribution from the nucleoplasm to nucleolus or the perinucleolar region. We found that low temperature treatment, transcription inhibition or replication of hepatitis C virus caused the intranuclear redistribution of the protein, suggesting that RHA shuttles between the nucleolus and nucleoplasm and becomes trapped in the nucleolus or the perinucleolar region upon blockade of transport to the nucleoplasm. Both the NTD and ATPase activity were essential for RHA's transport to the nucleolus or perinucleolar region. One of the double-stranded RNA binding domains (dsRBD II) was also required for this nucleolar translocation (NoT) phenotype. RNA interference studies revealed that RHA is essential for survival of cultured hepatoma cells and the ATPase activity appears to be important for this critical role

Crystal structure of Middle East respiratory syndrome coronavirus helicase.

Directory of Open Access Journals (Sweden)

Wei Hao

2017-06-01

Full Text Available Middle East respiratory syndrome coronavirus (MERS-CoV remains a threat to public health worldwide; however, effective vaccine or drug against CoVs remains unavailable. CoV helicase is one of the three evolutionary most conserved proteins in nidoviruses, thus making it an important target for drug development. We report here the first structure of full-length coronavirus helicase, MERS-CoV nsp13. MERS-CoV helicase has multiple domains, including an N-terminal Cys/His rich domain (CH with three zinc atoms, a beta-barrel domain and a C-terminal SF1 helicase core with two RecA-like subdomains. Our structural analyses show that while the domain organization of nsp13 is conserved throughout nidoviruses, the individual domains of nsp13 are closely related to the equivalent eukaryotic domains of Upf1 helicases. The most distinctive feature differentiating CoV helicases from eukaryotic Upf1 helicases is the interaction between CH domain and helicase core.

Helicase-dependent amplification of nucleic acids.

Science.gov (United States)

Cao, Yun; Kim, Hyun-Jin; Li, Ying; Kong, Huimin; Lemieux, Bertrand

2013-10-11

Helicase-dependent amplification (HDA) is a novel method for the isothermal in vitro amplification of nucleic acids. The HDA reaction selectively amplifies a target sequence by extension of two oligonucleotide primers. Unlike the polymerase chain reaction (PCR), HDA uses a helicase enzyme to separate the deoxyribonucleic acid (DNA) strands, rather than heat denaturation. This allows DNA amplification without the need for thermal cycling. The helicase used in HDA is a helicase super family II protein obtained from a thermophilic organism, Thermoanaerobacter tengcongensis (TteUvrD). This thermostable helicase is capable of unwinding blunt-end nucleic acid substrates at elevated temperatures (60° to 65°C). The HDA reaction can also be coupled with reverse transcription for ribonucleic acid (RNA) amplification. The products of this reaction can be detected during the reaction using fluorescent probes when incubations are conducted in a fluorimeter. Alternatively, products can be detected after amplification using a disposable amplicon containment device that contains an embedded lateral flow strip. Copyright © 2013 John Wiley & Sons, Inc.

Heavy Flavour Production at HERA

International Nuclear Information System (INIS)

Bailey, D.

2001-01-01

ZEUS and H1 results on heavy quark production using the HERA data from 1995 to 2000 are summarised with emphasis on unresolved problems. The HERA upgrade and its impact on future heavy flavour measurements is briefly discussed

Human SUV3 helicase regulates growth rate of the HeLa cells and can localize in the nucleoli.

Science.gov (United States)

Szewczyk, Maciej; Fedoryszak-Kuśka, Natalia; Tkaczuk, Katarzyna; Dobrucki, Jurek; Waligórska, Agnieszka; Stępień, Piotr P

2017-01-01

The human SUV3 helicase (SUV3, hSUV3, SUPV3L1) is a DNA/RNA unwinding enzyme belonging to the class of DexH-box helicases. It localizes predominantly in the mitochondria, where it forms an RNA-degrading complex called mitochondrial degradosome with exonuclease PNP (polynucleotide phosphorylase). Association of this complex with the polyA polymerase can modulate mitochondrial polyA tails. Silencing of the SUV3 gene was shown to inhibit the cell cycle and to induce apoptosis in human cell lines. However, since small amounts of the SUV3 helicase were found in the cell nuclei, it was not clear whether the observed phenotypes of SUV3 depletion were of mitochondrial or nuclear origin. In order to answer this question we have designed gene constructs able to inhibit the SUV3 activity exclusively in the cell nuclei. The results indicate that the observed growth rate impairment upon SUV3 depletion is due to its nuclear function(s). Unexpectedly, overexpression of the nuclear-targeted wild-type copies of the SUV3 gene resulted in a higher growth rate. In addition, we demonstrate that the SUV3 helicase can be found in the HeLa cell nucleoli, but it is not detectable in the DNA-repair foci. Our results indicate that the nucleolar-associated human SUV3 protein is an important factor in regulation of the cell cycle.

Senataxin, the ortholog of a yeast RNA helicase, is mutant in ataxia-ocular apraxia 2.

Science.gov (United States)

Moreira, Maria-Céu; Klur, Sandra; Watanabe, Mitsunori; Németh, Andrea H; Le Ber, Isabelle; Moniz, José-Carlos; Tranchant, Christine; Aubourg, Patrick; Tazir, Meriem; Schöls, Lüdger; Pandolfo, Massimo; Schulz, Jörg B; Pouget, Jean; Calvas, Patrick; Shizuka-Ikeda, Masami; Shoji, Mikio; Tanaka, Makoto; Izatt, Louise; Shaw, Christopher E; M'Zahem, Abderrahim; Dunne, Eimear; Bomont, Pascale; Benhassine, Traki; Bouslam, Naïma; Stevanin, Giovanni; Brice, Alexis; Guimarães, João; Mendonça, Pedro; Barbot, Clara; Coutinho, Paula; Sequeiros, Jorge; Dürr, Alexandra; Warter, Jean-Marie; Koenig, Michel

2004-03-01

Ataxia-ocular apraxia 2 (AOA2) was recently identified as a new autosomal recessive ataxia. We have now identified causative mutations in 15 families, which allows us to clinically define this entity by onset between 10 and 22 years, cerebellar atrophy, axonal sensorimotor neuropathy, oculomotor apraxia and elevated alpha-fetoprotein (AFP). Ten of the fifteen mutations cause premature termination of a large DEAxQ-box helicase, the human ortholog of yeast Sen1p, involved in RNA maturation and termination.

HERA the new frontier

International Nuclear Information System (INIS)

Feltesse, J.

1992-01-01

The large storage ring Hardon-Electron-Ring Accelerator (HERA) has been completed at DESY. The first collisions for physics studies are scheduled for spring 1992. HERA is the first electron-proton storage ring ever built. Electrons and protons of nominal energies, E e = 30 GeV and E p = 820 GeV will collide at center of mass energy 314 GeV. The beam energies can be varied, while maintaining luminosity, over the range E e = 10-35 GeV and E p = 300-1000 GeV. The theoretical motivations and questions raised by quantum chromodynamics in this new demain are approached at a phenomenological level. The measurement of x the momentum fraction carried by the struck quark inside the proton, and Q 2 , are reviewed over the accessible domain at HERA energies from the scattered electron and hadron flow laboratory variables. The various experimental methods to extract the gluon distribution are described. Other physics opportunities to test the standard model are briefly given. Finally, a few examples of processes not expected by the standard model, but within the reach of HERA energetics, are outlined

HERA: Illuminating Our Early Universe

Science.gov (United States)

DeBoer, David

2014-06-01

The Hydrogen Epoch of Reionization Arrays (HERA) roadmap is a staged plan for using the unique properties of the 21cm line from neutral hydrogen to probe our cosmic dawn, from the birth of the first stars and black holes, through the full reionization of the primordial intergalactic medium (IGM). HERA is a collaboration between the Precision Array Probing the Epoch of Reionization (PAPER), US-Murchison Widefield Array (MWA), and MIT Epoch of Reionization (MITEOR) teams.The first phase of the HERA roadmap entailed the operation of the PAPER and MWA telescopes to explore techniques and designs required to detect the primordial HI signal in the presence of radio continuum foreground emission some four orders of magnitude brighter. Studies with PAPER and the MWA have led to a new understanding of the interplay of foreground and instrumental systematics in the context of a three-dimensional cosmological intensity-mapping experiment. We are now able to remove foregrounds to the limits of our sensitivity with these instruments, culminating in the first physically meaningful upper limits on the power spectrum of 2 cm emission from reionization.Building on this understanding, the next stage of HERA entails a new 14m diameter antenna element that is optimized both for sensitivity and for minimizing foreground systematics. Arranging these elements in a compact hexagonal grid yields an array that facilitates calibration, leverages proven foreground removal techniques, and is scalable to large collecting areas. The HERA phase II will be located in the radio quiet environment of the SKA site in Karoo, South Africa, and have a sensitivity close to two orders of magnitude better than PAPER and the MWA, with broader frequency coverage, HERA can paint an uninterrupted picture through reionization, back to the end of the Dark Ages.This paper will present a summary of the current understanding of the signal characteristics and measurements and describe this planned HERA telescope to

Velocity and processivity of helicase unwinding of double-stranded nucleic acids

International Nuclear Information System (INIS)

Betterton, M D; Juelicher, F

2005-01-01

Helicases are molecular motors which unwind double-stranded nucleic acids (dsNA) in cells. Many helicases move with directional bias on single-stranded (ss) nucleic acids, and couple their directional translocation to strand separation. A model of the coupling between translocation and unwinding uses an interaction potential to represent passive and active helicase mechanisms. A passive helicase must wait for thermal fluctuations to open dsNA base pairs before it can advance and inhibit NA closing. An active helicase directly destabilizes dsNA base pairs, accelerating the opening rate. Here we extend this model to include helicase unbinding from the nucleic-acid strand. The helicase processivity depends on the form of the interaction potential. A passive helicase has a mean attachment time which does not change between ss translocation and ds unwinding, while an active helicase in general shows a decrease in attachment time during unwinding relative to ss translocation. In addition, we describe how helicase unwinding velocity and processivity vary if the base-pair binding free energy is changed

Hard diffraction at HERA and Tevatron

International Nuclear Information System (INIS)

Kaidalov, A.B.

2001-01-01

A relation between hard diffraction at HERA and Tevatron is discussed. A model, which takes into account unitarity effects is developed for interaction of high-energy virtual photons with nucleons. It is shown that this model gives a good description of HERA data on both total γ* p total cross section and diffractive dissociation of virtual photons in a broad region of Q 2 . It is shown how to describe the CDF data on diffractive jet production at Tevatron using an information on distribution of partons in the Pomeron from HERA experiments

Purification and crystallization of Kokobera virus helicase

International Nuclear Information System (INIS)

De Colibus, Luigi; Speroni, Silvia; Coutard, Bruno; Forrester, Naomi L.; Gould, Ernest; Canard, Bruno; Mattevi, Andrea

2007-01-01

Kokobera virus is a mosquito-borne flavivirus belonging, like West Nile virus, to the Japanese encephalitis virus serocomplex. Crystals of the Kokobera virus helicase domain were obtained by the hanging-drop vapour-diffusion method and exhibit a diffraction limit of 2.3 Å. Kokobera virus is a mosquito-borne flavivirus belonging, like West Nile virus, to the Japanese encephalitis virus serocomplex. The flavivirus genus is characterized by a positive-sense single-stranded RNA genome. The unique open reading frame of the viral RNA is transcribed and translated as a single polyprotein which is post-translationally cleaved to yield three structural and seven nonstructural proteins, one of which is the NS3 gene that encodes a C-terminal helicase domain consisting of 431 amino acids. Helicase inhibitors are potential antiviral drugs as the helicase is essential to viral replication. Crystals of the Kokobera virus helicase domain were obtained by the hanging-drop vapour-diffusion method. The crystals belong to space group P3 1 21 (or P3 2 21), with unit-cell parameters a = 88.6, c = 138.6 Å, and exhibit a diffraction limit of 2.3 Å

Purification and crystallization of Kokobera virus helicase

Energy Technology Data Exchange (ETDEWEB)

De Colibus, Luigi; Speroni, Silvia [Department of Genetics and Microbiology, University of Pavia, Via Ferrata 1, 27100 Pavia (Italy); Coutard, Bruno [Architecture et Fonction des Macromolécules Biologiques, UMR 6098 CNRS et Université Aix-Marseille I et II, ESIL, Campus de Luminy, 13288 Marseille CEDEX 09 (France); Forrester, Naomi L.; Gould, Ernest [Centre for Ecology and Hydrology (formerly Institute of Virology), Mansfield Road, Oxford OX1 3SR (United Kingdom); Canard, Bruno [Architecture et Fonction des Macromolécules Biologiques, UMR 6098 CNRS et Université Aix-Marseille I et II, ESIL, Campus de Luminy, 13288 Marseille CEDEX 09 (France); Mattevi, Andrea, E-mail: mattevi@ipvgen.unipv.it [Department of Genetics and Microbiology, University of Pavia, Via Ferrata 1, 27100 Pavia (Italy)

2007-03-01

Kokobera virus is a mosquito-borne flavivirus belonging, like West Nile virus, to the Japanese encephalitis virus serocomplex. Crystals of the Kokobera virus helicase domain were obtained by the hanging-drop vapour-diffusion method and exhibit a diffraction limit of 2.3 Å. Kokobera virus is a mosquito-borne flavivirus belonging, like West Nile virus, to the Japanese encephalitis virus serocomplex. The flavivirus genus is characterized by a positive-sense single-stranded RNA genome. The unique open reading frame of the viral RNA is transcribed and translated as a single polyprotein which is post-translationally cleaved to yield three structural and seven nonstructural proteins, one of which is the NS3 gene that encodes a C-terminal helicase domain consisting of 431 amino acids. Helicase inhibitors are potential antiviral drugs as the helicase is essential to viral replication. Crystals of the Kokobera virus helicase domain were obtained by the hanging-drop vapour-diffusion method. The crystals belong to space group P3{sub 1}21 (or P3{sub 2}21), with unit-cell parameters a = 88.6, c = 138.6 Å, and exhibit a diffraction limit of 2.3 Å.

Hydrogen Epoch of Reionization Array (HERA)

Science.gov (United States)

DeBoer, David R.; HERA

2015-01-01

The Hydrogen Epoch of Reionization Arrays (HERA - reionization.org) roadmap uses the unique properties of the neutral hydrogen (HI) 21cm line to probe our cosmic dawn: from the birth of the first stars and black holes, through the full reionization of the primordial intergalactic medium (IGM). HERA is a collaboration between the Precision Array Probing the Epoch of Reionization (PAPER - eor.berkeley.edu), the US-based Murchison Widefield Array (MWA - mwatelescope.org), and MIT Epoch of Reionization (MITEOR) teams along with the South African SKA-SA, University of KwaZulu Natal and the University of Cambridge Cavendish Laborabory. HERA has recently been awarded a National Science Foundation Mid-Scale Innovation Program grant to begin the next phase.HERA leverages the operation of the PAPER and MWA telescopes to explore techniques and designs required to detect the primordial HI signal in the presence of systematics and radio continuum foreground emission some four orders of magnitude brighter. With this understanding, we are now able to remove foregrounds to the limits of our sensitivity, culminating in the first physically meaningful upper limits. A redundant calibration algorithm from MITEOR improves the sensitivity of the approach.Building on this, the next stage of HERA incorporates a 14m diameter antenna element that is optimized both for sensitivity and for minimizing foreground systematics. Arranging these elements in a compact hexagonal grid yields an array that facilitates calibration, leverages proven foreground removal techniques, and is scalable to large collecting areas. HERA will be located in the radio quiet environment of the SKA site in the Karoo region of South Africa (where PAPER is currently located). It will have a sensitivity close to two orders of magnitude better than PAPER and the MWA to ensure a robust detection. With its sensitivity and broader frequency coverage, HERA can paint an uninterrupted picture through reionization, back to the

Status of the HERA-B experiment

CERN Document Server

Schmidt, B

2001-01-01

HERA-B is a fixed target experiment using the halo of the 920 GeV proton beam of HERA on an internal wire target. The aim of the experiment is to trigger on rare B to J/ psi decays, using a highly selective trigger system and to measure the CP violating parameter sin (2 beta ). The specific problems of the experiment arise from the extreme background conditions which put unprecedented requirements on the detector components and the triggering and read out system. After 6 years of intense R&D, HERA-B has been finally completed and is now in its commissioning phase.

The DEAD-Box Protein CYT-19 Uses Arginine Residues in Its C-Tail To Tether RNA Substrates.

Science.gov (United States)

Busa, Veronica F; Rector, Maxwell J; Russell, Rick

2017-07-18

DEAD-box proteins are nonprocessive RNA helicases that play diverse roles in cellular processes. The Neurospora crassa DEAD-box protein CYT-19 promotes mitochondrial group I intron splicing and functions as a general RNA chaperone. CYT-19 includes a disordered, arginine-rich "C-tail" that binds RNA, positioning the helicase core to capture and unwind nearby RNA helices. Here we probed the C-tail further by varying the number and positions of arginines within it. We found that removing sets of as few as four of the 11 arginines reduced RNA unwinding activity (k cat /K M ) to a degree equivalent to that seen upon removal of the C-tail, suggesting that a minimum or "threshold" number of arginines is required. In addition, a mutant with 16 arginines displayed RNA unwinding activity greater than that of wild-type CYT-19. The C-tail modifications impacted unwinding only of RNA helices within constructs that included an adjacent helix or structured RNA element that would allow C-tail binding, indicating that the helicase core remained active in the mutants. In addition, changes in RNA unwinding efficiency of the mutants were mirrored by changes in functional RNA affinity, as determined from the RNA concentration dependence of ATPase activity, suggesting that the C-tail functions primarily to increase RNA affinity. Interestingly, the salt concentration dependence of RNA unwinding activity is unaffected by C-tail composition, suggesting that the C-tail uses primarily hydrogen bonding, not electrostatic interactions, to bind double-stranded RNA. Our results provide insights into how an unstructured C-tail contributes to DEAD-box protein activity and suggest parallels with other families of RNA- and DNA-binding proteins.

The HERA Approach To Morally Competent Robots

DEFF Research Database (Denmark)

Lindner, Felix; Bentzen, Martin Mose; Nebel, Bernhard

2017-01-01

for implementation in robots. The novelty is that HERA implements multiple ethical principles like utilitarianism, the principle of double effect, and a Pareto-inspired principle. These principles can be used to automatically assess moral situations represented in a format we call causal agency models. We discuss......To address the requirement for autonomous moral decision making, we introduce a software library for modeling hybrid ethical reasoning agents (short: HERA). The goal of the HERA project is to provide theoretically well-founded and practically usable logic-based machine ethics tools...... how to model moral situations using our approach, and how it can cope with uncertainty about moral values. Finally, we briefly outline the architecture of our robot IMMANUEL, which implements HERA and is able to explain ethical decisions to humans....

Structural basis of Zika virus helicase in recognizing its substrates

Directory of Open Access Journals (Sweden)

Hongliang Tian

2016-07-01

Full Text Available Abstract The recent explosive outbreak of Zika virus (ZIKV infection has been reported in South and Central America and the Caribbean. Neonatal microcephaly associated with ZIKV infection has already caused a public health emergency of international concern. No specific vaccines or drugs are currently available to treat ZIKV infection. The ZIKV helicase, which plays a pivotal role in viral RNA replication, is an attractive target for therapy. We determined the crystal structures of ZIKV helicase-ATP-Mn2+ and ZIKV helicase-RNA. This is the first structure of any flavivirus helicase bound to ATP. Comparisons with related flavivirus helicases have shown that although the critical P-loop in the active site has variable conformations among different species, it adopts an identical mode to recognize ATP/Mn2+. The structure of ZIKV helicase-RNA has revealed that upon RNA binding, rotations of the motor domains can cause significant conformational changes. Strikingly, although ZIKV and dengue virus (DENV apo-helicases share conserved residues for RNA binding, their different manners of motor domain rotations result in distinct individual modes for RNA recognition. It suggests that flavivirus helicases could have evolved a conserved engine to convert chemical energy from nucleoside triphosphate to mechanical energy for RNA unwinding, but different motor domain rotations result in variable RNA recognition modes to adapt to individual viral replication.

Zebrafish P54 RNA helicases are cytoplasmic granule residents that are required for development and stress resilience

Directory of Open Access Journals (Sweden)

Cecilia Zampedri

2016-10-01

Full Text Available Stress granules are cytoplasmic foci that directly respond to the protein synthesis status of the cell. Various environmental insults, such as oxidative stress or extreme heat, block protein synthesis; consequently, mRNA will stall in translation, and stress granules will immediately form and become enriched with mRNAs. P54 DEAD box RNA helicases are components of RNA granules such as P-bodies and stress granules. We studied the expression, in cytoplasmic foci, of both zebrafish P54 RNA helicases (P54a and P54b during development and found that they are expressed in cytoplasmic granules under both normal conditions and stress conditions. In zebrafish embryos exposed to heat shock, some proportion of P54a and P54b helicases move to larger granules that exhibit the properties of genuine stress granules. Knockdown of P54a and/or P54b in zebrafish embryos produces developmental abnormalities restricted to the posterior trunk; further, these embryos do not form stress granules, and their survival upon exposure to heat-shock conditions is compromised. Our observations fit the model that cells lacking stress granules have no resilience or ability to recover once the stress has ended, indicating that stress granules play an essential role in the way organisms adapt to a changing environment.

The New Web-Based Hera Data Processing System at the HEASARC

Science.gov (United States)

Pence, W.; Chai, P.

2012-09-01

The HEASARC at NASA/GSFC has hosted an on-line astronomical data processing system called Hera for several years. Hera provides a complete data processing environment, including installed software packages, local data storage, and the CPU resources needed to support astronomical research by external users. The original design of Hera was based on a ‘client/server’ model which required that the user a) download and install a small helper program on their own computer before using Hera, and b) ensure that several non-standard computer ports/sockets be open for communication through any local firewalls on the user's machine. Hera has now been redesigned to eliminate these restrictions by operating within a purely Web-based environment which is accessed via a standard Web browser. Web-Hera is available at http://heasarc.gsfc.nasa.gov/webHera.

Structural basis for the function of DEAH helicases

DEFF Research Database (Denmark)

He, Yangzi; Andersen, Gregers Rom; Nielsen, Klaus Hvid

2010-01-01

DEAH helicases participate in pre‐messenger RNA splicing and ribosome biogenesis. The structure of yeast Prp43p‐ADP reveals the homology of DEAH helicases to DNA helicases and the presence of an oligonucleotide‐binding motif. A β‐hairpin from the second RecA domain is wedged between two carboxy......‐terminal domains and blocks access to the occluded RNA binding site formed by the RecA domains and a C‐terminal domain. ATP binding and hydrolysis are likely to induce conformational changes in the hairpin that are important for RNA unwinding or ribonucleoprotein remodelling. The structure of Prp43p provides...

The New Web-Based Hera Data Processing System at the HEASARC

Science.gov (United States)

Pence, W.

2011-01-01

The HEASARC at NASA/GSFC has provide an on-line astronomical data processing system called Hera for several years. Hera provides a complete data processing environment, including installed software packages, local data storage, and the CPU resources needed to process the user's data. The original design of Hera, however, has 2 requirements that has limited it's usefulness for some users, namely, that 1) the user must download and install a small helper program on their own computer before using Hera, and 2) Hera requires that several computer ports/sockets be allowed to communicate through any local firewalls on the users machine. Both of these restrictions can be problematic for some users, therefore we are now migrating Hera into a purely Web based environment which only requires a standard Web browser. The first release of Web Hera is now publicly available at http://heasarc.gsfc.nasa.gov/webheara/. It currently provides a standard graphical interface for running hundreds of different data processing programs that are available in the HEASARC's ftools software package. Over the next year we to add more features to Web Hera, including an interactive command line interface, and more display and line capabilities.

Preliminary crystallographic characterization of an RNA helicase from Kunjin virus

International Nuclear Information System (INIS)

Mastrangelo, Eloise; Bollati, Michela; Milani, Mario; Brisbarre, Nadège; Lamballerie, Xavier de; Coutard, Bruno; Canard, Bruno; Khromykh, Alexander; Bolognesi, Martino

2006-01-01

The C-terminal 440 amino acids of the NS3 protein from Kunjin virus (Flaviviridae) code for a helicase. The protein has been overexpressed and crystallized. Characterization of the isolated monoclinic crystal form and diffraction data (at 3.0 Å resolution) are presented, together with a preliminary molecular-replacement solution. Kunjin virus is a member of the Flavivirus genus and is an Australian variant of West Nile virus. The C-terminal domain of the Kunjin virus NS3 protein displays helicase activity. The protein is thought to separate daughter and template RNA strands, assisting the initiation of replication by unwinding RNA secondary structure in the 3′ nontranslated region. Expression, purification and preliminary crystallographic characterization of the NS3 helicase domain are reported. It is shown that Kunjin virus helicase may adopt a dimeric assembly in absence of nucleic acids, oligomerization being a means to provide the helicases with multiple nucleic acid-binding capability, facilitating translocation along the RNA strands. Kunjin virus NS3 helicase domain is an attractive model for studying the molecular mechanisms of flavivirus replication, while simultaneously providing a new basis for the rational development of anti-flaviviral compounds

[RTEL1 (regulator of telomere elongation helicase 1), a DNA helicase essential for genome stability].

Science.gov (United States)

Le Guen, Tangui; Jullien, Laurent; Schertzer, Mike; Lefebvre, Axelle; Kermasson, Laetitia; de Villartay, Jean-Pierre; Londoño-Vallejo, Arturo; Revy, Patrick

2013-12-01

RTEL1 (regulator of telomere length helicase 1) is a DNA helicase that has been identified more than 10 years ago. Many works since, mainly in the nematode Caenorhabditis elegans and the mouse, have highlighted its role in chromosomal stability, maintenance of telomere length, and DNA repair. Recently, four laboratories have characterized RTEL1 mutations in patients with dyskeratosis congenita (DC) and Hoyeraal-Hreidarsson (HH) syndrome, a rare and severe variant of DC. We here summarize the current knowledge on RTEL1 and discuss the possible other functions that RTEL1 could play. © 2013 médecine/sciences – Inserm.

Genome-wide identification of SF1 and SF2 helicases from archaea.

Science.gov (United States)

Chamieh, Hala; Ibrahim, Hiba; Kozah, Juliana

2016-01-15

Archaea microorganisms have long been used as model organisms for the study of protein molecular machines. Archaeal proteins are particularly appealing to study since archaea, even though prokaryotic, possess eukaryotic-like cellular processes. Super Family I (SF1) and Super Family II (SF2) helicase families have been studied in many model organisms, little is known about their presence and distribution in archaea. We performed an exhaustive search of homologs of SF1 and SF2 helicase proteins in 95 complete archaeal genomes. In the present study, we identified the complete sets of SF1 and SF2 helicases in archaea. Comparative analysis between archaea, human and the bacteria E. coli SF1 and SF2 helicases, resulted in the identification of seven helicase families conserved among representatives of the domains of life. This analysis suggests that these helicase families are highly conserved throughout evolution. We highlight the conserved motifs of each family and characteristic domains of the detected families. Distribution of SF1/SF2 families show that Ski2-like, Lhr, Sfth and Rad3-like helicases are ubiquitous among archaeal genomes while the other families are specific to certain archaeal groups. We also report the presence of a novel SF2 helicase specific to archaea domain named Archaea Specific Helicase (ASH). Phylogenetic analysis indicated that ASH has evolved in Euryarchaeota and is evolutionary related to the Ski2-like family with specific characteristic domains. Our study provides the first exhaustive analysis of SF1 and SF2 helicases from archaea. It expands the variety of SF1 and SF2 archaeal helicases known to exist to date and provides a starting point for new biochemical and genetic studies needed to validate their biological functions. Copyright © 2015 Elsevier B.V. All rights reserved.

Results From PAPER/HERA

Science.gov (United States)

Pober, Jonathan C.

2018-05-01

The Precision Array for Probing the Epoch of Reionization (PAPER) was a first-generation 21 cm cosmology experiment with the specific goal of detecting the power spectrum of the 21 cm emission from the Epoch of Reionization. Analysis of PAPER data is still ongoing, but lessons learned from PAPER to date have played a critical role in designing the next-generation Hydrogen Epoch of Reionization Array (HERA) experiment. This article reviews five key design choices made by PAPER: use of a non-imaging configuration, redundancy, short baselines, small antenna elements, and a large instantaneous bandwidth. We describe the impact of these choices and the role they played in designing HERA.

Summary of workshop on future physics with HERA data

International Nuclear Information System (INIS)

Bacchetta, A.; Bluemlein, J.; Behnke, O.

2015-12-01

Recent highlights from the HERA experiments, Hermes, H1 and ZEUS, are reviewed and ideas for future analyses to fully exploit this unique data set are proposed. This document is a summary of a workshop on future physics with HERA data held at DESY, Hamburg at the end of 2014. All areas of HERA physics are covered and contributions from both experimentalists and theorists are included. The document outlines areas where HERA physics can still make a significant contribution, principally in a deeper understanding of QCD, and its relevance to other facilities. Within the framework of the Data Preservation in High Energy Physics, the HERA data have been preserved for analyses to take place over a timescale of 10 years and more. Therefore, although an extensive list of possibilities is presented here, safe storage of the data ensures that it can also be used in the far future should new ideas and analyses be proposed.

Close encounters for the first time: Helicase interactions with DNA damage.

Science.gov (United States)

Khan, Irfan; Sommers, Joshua A; Brosh, Robert M

2015-09-01

DNA helicases are molecular motors that harness the energy of nucleoside triphosphate hydrolysis to unwinding structured DNA molecules that must be resolved during cellular replication, DNA repair, recombination, and transcription. In vivo, DNA helicases are expected to encounter a wide spectrum of covalent DNA modifications to the sugar phosphate backbone or the nitrogenous bases; these modifications can be induced by endogenous biochemical processes or exposure to environmental agents. The frequency of lesion abundance can vary depending on the lesion type. Certain adducts such as oxidative base modifications can be quite numerous, and their effects can be helix-distorting or subtle perturbations to DNA structure. Helicase encounters with specific DNA lesions and more novel forms of DNA damage will be discussed. We will also review the battery of assays that have been used to characterize helicase-catalyzed unwinding of damaged DNA substrates. Characterization of the effects of specific DNA adducts on unwinding by various DNA repair and replication helicases has proven to be insightful for understanding mechanistic and biological aspects of helicase function in cellular DNA metabolism. Published by Elsevier B.V.

DESY: HERA commissioning

International Nuclear Information System (INIS)

Anon.

1992-01-01

The commissioning of the world's first electron-proton collider - the 6.3 kilometre HERA ring at the DESY Laboratory in Hamburg - last year was the result of more than a decade of careful planning, design and construction

Overcoming natural replication barriers: differential helicase requirements.

Science.gov (United States)

Anand, Ranjith P; Shah, Kartik A; Niu, Hengyao; Sung, Patrick; Mirkin, Sergei M; Freudenreich, Catherine H

2012-02-01

DNA sequences that form secondary structures or bind protein complexes are known barriers to replication and potential inducers of genome instability. In order to determine which helicases facilitate DNA replication across these barriers, we analyzed fork progression through them in wild-type and mutant yeast cells, using 2-dimensional gel-electrophoretic analysis of the replication intermediates. We show that the Srs2 protein facilitates replication of hairpin-forming CGG/CCG repeats and prevents chromosome fragility at the repeat, whereas it does not affect replication of G-quadruplex forming sequences or a protein-bound repeat. Srs2 helicase activity is required for hairpin unwinding and fork progression. Also, the PCNA binding domain of Srs2 is required for its in vivo role of replication through hairpins. In contrast, the absence of Sgs1 or Pif1 helicases did not inhibit replication through structural barriers, though Pif1 did facilitate replication of a telomeric protein barrier. Interestingly, replication through a protein barrier but not a DNA structure barrier was modulated by nucleotide pool levels, illuminating a different mechanism by which cells can regulate fork progression through protein-mediated stall sites. Our analyses reveal fundamental differences in the replication of DNA structural versus protein barriers, with Srs2 helicase activity exclusively required for fork progression through hairpin structures.

RecQ Helicases

DEFF Research Database (Denmark)

Larsen, Nicolai Balle; Hickson, Ian D

2013-01-01

The RecQ family of DNA helicases is highly conserved throughout -evolution, and is important for the maintenance of genome stability. In humans, five RecQ family members have been identified: BLM, WRN, RECQ4, RECQ1 and RECQ5. Defects in three of these give rise to Bloom's syndrome (BLM), Werner...

Polarisation at HERA. Reanalysis of the HERA II polarimeter data

Energy Technology Data Exchange (ETDEWEB)

Sobloher, B.; Behnke, T.; Olsson, J.; Pitzl, D.; Schmitt, S.; Tomaszewska, J.; Fabbri, R.

2012-01-15

In this technical note we briefly present the analysis of the HERA polarimeters (transversal and longitudinal) as of summer 2011. We present the final reanalysis of the TPOL data, and discuss the systematic uncertainties. A procedure to combine and average LPOL and TPOL data is presented. (orig.)

Polarisation at HERA. Reanalysis of the HERA II polarimeter data

International Nuclear Information System (INIS)

Sobloher, B.; Behnke, T.; Olsson, J.; Pitzl, D.; Schmitt, S.; Tomaszewska, J.; Fabbri, R.

2012-01-01

In this technical note we briefly present the analysis of the HERA polarimeters (transversal and longitudinal) as of summer 2011. We present the final reanalysis of the TPOL data, and discuss the systematic uncertainties. A procedure to combine and average LPOL and TPOL data is presented. (orig.)

HERA results on QCD and EW physics

International Nuclear Information System (INIS)

Zarnecki, A.F.

1997-01-01

Selected HERA results on QCD and EW interactions are presented. They include the measurement of the proton structure function and its analysis in terms of the QCD evolution, as well as results concerning deep inelastic scattering at very low and very high Q 2 . Selected HERA limits on new physics and parameters which extend the standard model are also presented. (author)

Saccharomyces cerevisiae Hrq1 requires a long 3'-tailed DNA substrate for helicase activity.

Science.gov (United States)

Kwon, Sung-Hun; Choi, Do-Hee; Lee, Rina; Bae, Sung-Ho

2012-10-26

RecQ helicases are well conserved proteins from bacteria to human and function in various DNA metabolism for maintenance of genome stability. Five RecQ helicases are found in humans, whereas only one RecQ helicase has been described in lower eukaryotes. However, recent studies predicted the presence of a second RecQ helicase, Hrq1, in fungal genomes and verified it as a functional gene in fission yeast. Here we show that 3'-5' helicase activity is intrinsically associated with Hrq1 of Saccharomyces cerevisiae. We also determined several biochemical properties of Hrq1 helicase distinguishable from those of other RecQ helicase members. Hrq1 is able to unwind relatively long duplex DNA up to 120-bp and is significantly stimulated by a preexisting fork structure. Further, the most striking feature of Hrq1 is its absolute requirement for a long 3'-tail (⩾70-nt) for efficient unwinding of duplex DNA. We also found that Hrq1 has potent DNA strand annealing activity. Our results indicate that Hrq1 has vigorous helicase activity that deserves further characterization to expand our understanding of RecQ helicases. Copyright © 2012 Elsevier Inc. All rights reserved.

The soft pomeron and HERA

International Nuclear Information System (INIS)

Donnachie, A.; Landshoff, P.V.

1996-01-01

The standard phenomenology of the soft pomeron in hadron-hadron interactions is recalled briefly. The model is confronted with the HERA data for the total photoproduction cross section, deep inelastic scattering, diffractive vector meson photoproduction and diffractive electroproduction of vector mesons. Although much of the data can be explained by the model, there are some aspects of the HERA data which require a more rapid variation with energy than can be incorporated. It is argued that the perturbative (BFKL) pomeron cannot give a sufficiently large contribution to explain these observations. Possible non-perturbative solutions to this problem are indicated. (author)

The soft pomeron and HERA

International Nuclear Information System (INIS)

Donnachie, A.; Landshoff, P.V.

1996-01-01

The standard phenomenology of the soft pomeron in hadron-hadron interactions is recalled briefly. The model is confronted with the HERA data for the total photoproduction cross section, deep inelastic scattering, diffractive vector meson photoproduction and diffractive electroproduction of vector mesons. Although much of the data can be explained by the model, there are some aspects of the HERA data which require a more rapid variation with energy than can be incorporated. It is argued that the perturbative (BFKL) pomeron cannot give a sufficiently large contribution to explain these observations. Possible nonperturbative solutions to this problem are indicated. (author)

Saccharomyces cerevisiae Hrq1 requires a long 3′-tailed DNA substrate for helicase activity

International Nuclear Information System (INIS)

Kwon, Sung-Hun; Choi, Do-Hee; Lee, Rina; Bae, Sung-Ho

2012-01-01

Highlights: ► Hrq1 has intrinsic 3′–5′ helicase and DNA strand annealing activities. ► Hrq1 requires a long 3′-tail for efficient DNA unwinding. ► Helicase activity of Hrq1 is stimulated by a fork structure. ► Hrq1 is a moderately processive helicase. -- Abstract: RecQ helicases are well conserved proteins from bacteria to human and function in various DNA metabolism for maintenance of genome stability. Five RecQ helicases are found in humans, whereas only one RecQ helicase has been described in lower eukaryotes. However, recent studies predicted the presence of a second RecQ helicase, Hrq1, in fungal genomes and verified it as a functional gene in fission yeast. Here we show that 3′–5′ helicase activity is intrinsically associated with Hrq1 of Saccharomyces cerevisiae. We also determined several biochemical properties of Hrq1 helicase distinguishable from those of other RecQ helicase members. Hrq1 is able to unwind relatively long duplex DNA up to 120-bp and is significantly stimulated by a preexisting fork structure. Further, the most striking feature of Hrq1 is its absolute requirement for a long 3′-tail (⩾70-nt) for efficient unwinding of duplex DNA. We also found that Hrq1 has potent DNA strand annealing activity. Our results indicate that Hrq1 has vigorous helicase activity that deserves further characterization to expand our understanding of RecQ helicases.

Uncoupling of Protease trans-Cleavage and Helicase Activities in Pestivirus NS3.

Science.gov (United States)

Zheng, Fengwei; Lu, Guoliang; Li, Ling; Gong, Peng; Pan, Zishu

2017-11-01

The nonstructural protein NS3 from the Flaviviridae family is a multifunctional protein that contains an N-terminal protease and a C-terminal helicase, playing essential roles in viral polyprotein processing and genome replication. Here we report a full-length crystal structure of the classical swine fever virus (CSFV) NS3 in complex with its NS4A protease cofactor segment (PCS) at a 2.35-Å resolution. The structure reveals a previously unidentified ∼2,200-Å 2 intramolecular protease-helicase interface comprising three clusters of interactions, representing a "closed" global conformation related to the NS3-NS4A cis -cleavage event. Although this conformation is incompatible with protease trans -cleavage, it appears to be functionally important and beneficial to the helicase activity, as the mutations designed to perturb this conformation impaired both the helicase activities in vitro and virus production in vivo Our work reveals important features of protease-helicase coordination in pestivirus NS3 and provides a key basis for how different conformational states may explicitly contribute to certain functions of this natural protease-helicase fusion protein. IMPORTANCE Many RNA viruses encode helicases to aid their RNA genome replication and transcription by unwinding structured RNA. Being naturally fused to a protease participating in viral polyprotein processing, the NS3 helicases encoded by the Flaviviridae family viruses are unique. Therefore, how these two enzyme modules coordinate in a single polypeptide is of particular interest. Here we report a previously unidentified conformation of pestivirus NS3 in complex with its NS4A protease cofactor segment (PCS). This conformational state is related to the protease cis -cleavage event and is optimal for the function of helicase. This work provides an important basis to understand how different enzymatic activities of NS3 may be achieved by the coordination between the protease and helicase through different

Overview of the Human Exploration Research Analog (HERA)

Science.gov (United States)

Neigut, J.

2015-01-01

In 2013, the Human Research Program at NASA began developing a new confinement analog specifically for conducting research to investigate the effects of confinement on the human system. The HERA (Human Exploration Research Analog) habitat has been used for both 7 and 14 day missions to date to examine and mitigate exploration risks to enable safe, reliable and productive human space exploration. This presentation will describe how the Flight Analogs Project developed the HERA facility and the infrastructure to suit investigator requirements for confinement research and in the process developed a new approach to analog utilization and a new state of the art analog facility. Details regarding HERA operations will be discussed including specifics on the mission simulation utilized for the current 14-day campaign, the specifics of the facility (total volume, overall size, hardware), and the capabilities available to researchers. The overall operational philosophy, mission fidelity including timeline, schedule pressures and cadence, and development and implementation of mission stressors will be presented. Research conducted to date in the HERA has addressed risks associated with behavioral health and performance, human physiology, as well as human factors. This presentation will conclude with a discussion of future research plans for the HERA, including infrastructure improvements and additional research capabilities planned for the upcoming 30-day missions in 2016.

The Future is Hera! Analyzing Astronomical Over the Internet

Science.gov (United States)

Valencic, L. A.; Chai, P.; Pence, W.; Shafer, R.; Snowden, S.

2008-01-01

Hera is the data processing facility provided by the High Energy Astrophysics Science Archive Research Center (HEASARC) at the NASA Goddard Space Flight Center for analyzing astronomical data. Hera provides all the pre-installed software packages, local disk space, and computing resources need to do general processing of FITS format data files residing on the users local computer, and to do research using the publicly available data from the High ENergy Astrophysics Division. Qualified students, educators and researchers may freely use the Hera services over the internet of research and educational purposes.

The RNA helicase Rm62 cooperates with SU(VAR3-9 to re-silence active transcription in Drosophila melanogaster.

Directory of Open Access Journals (Sweden)

Joern Boeke

Full Text Available Gene expression is highly dynamic and many genes show a wide range in expression over several orders of magnitude. This regulation is often mediated by sequence specific transcription factors. In addition, the tight packaging of DNA into chromatin can provide an additional layer of control resulting in a dynamic range of gene expression covering several orders of magnitude. During transcriptional activation, chromatin barriers have to be eliminated to allow an efficient progression of the RNA polymerase. This repressive chromatin structure has to be re-established quickly after it has been activated in order to tightly regulate gene activity. We show that the DExD/H box containing RNA helicase Rm62 is targeted to a site of rapid induction of transcription where it is responsible for an increased degree of methylation at H3K9 at the heat shock locus after removal of the heat shock stimulus. The RNA helicase interacts with the well-characterized histone methyltransferase SU(VAR3-9 via its N-terminus, which provides a potential mechanism for the targeting of H3K9 methylation to highly regulated genes. The recruitment of SU(VAR3-9 through interaction with a RNA helicase to a site of active transcription might be a general mechanism that allows an efficient silencing of highly regulated genes thereby enabling a cell to fine tune its gene activity over a wide range.

Possible future HERA analyses

International Nuclear Information System (INIS)

Geiser, Achim

2015-12-01

A variety of possible future analyses of HERA data in the context of the HERA data preservation programme is collected, motivated, and commented. The focus is placed on possible future analyses of the existing ep collider data and their physics scope. Comparisons to the original scope of the HERA pro- gramme are made, and cross references to topics also covered by other participants of the workshop are given. This includes topics on QCD, proton structure, diffraction, jets, hadronic final states, heavy flavours, electroweak physics, and the application of related theory and phenomenology topics like NNLO QCD calculations, low-x related models, nonperturbative QCD aspects, and electroweak radiative corrections. Synergies with other collider programmes are also addressed. In summary, the range of physics topics which can still be uniquely covered using the existing data is very broad and of considerable physics interest, often matching the interest of results from colliders currently in operation. Due to well-established data and MC sets, calibrations, and analysis procedures the manpower and expertise needed for a particular analysis is often very much smaller than that needed for an ongoing experiment. Since centrally funded manpower to carry out such analyses is not available any longer, this contribution not only targets experienced self-funded experimentalists, but also theorists and master-level students who might wish to carry out such an analysis.

Signals for supersymmetry at HERA

International Nuclear Information System (INIS)

Dreiner, H.; Morawitz, P.

1994-07-01

We consider the baryon parity signals at HERA for the case of the MSSM production mechanisms and the decays via the lepton number violating couplings L i Q anti D. We can probe very small Yukawa couplings λ'> or ∼3.10 -6 , limited only by the decay length of the LSP. We assume the LSP to be the lightest neutralino and study its decays in detail. We present the matrix element squared for the tree-level decay amplitude of a generally mixed neutralino explicitly. We find that the branching fraction to charged leptons strongly depends on the SUSY parameters and can differ significantly from the naively expected 50%. The SUSY mass reaches of the studied processes in the ZEUS detector at HERA were found to be: (m(e, anti ν)+m( anti q)) ≤ 170 GeV, 195 GeV and 205 GeV for the L t Q anti D, L μ Q anti D and L e Q anti D couplings respectively. These are well above existing limits on R-parity violating (R p ) SUSY from previous experiments. We conclude that HERA offers a very promising discovery potential for R p SUSY. (orig.)

Identification of Hydroxyanthraquinones as Novel Inhibitors of Hepatitis C Virus NS3 Helicase

Science.gov (United States)

Furuta, Atsushi; Tsubuki, Masayoshi; Endoh, Miduki; Miyamoto, Tatsuki; Tanaka, Junichi; Abdus Salam, Kazi; Akimitsu, Nobuyoshi; Tani, Hidenori; Yamashita, Atsuya; Moriishi, Kohji; Nakakoshi, Masamichi; Sekiguchi, Yuji; Tsuneda, Satoshi; Noda, Naohiro

2015-01-01

Hepatitis C virus (HCV) is an important etiological agent of severe liver diseases, including cirrhosis and hepatocellular carcinoma. The HCV genome encodes nonstructural protein 3 (NS3) helicase, which is a potential anti-HCV drug target because its enzymatic activity is essential for viral replication. Some anthracyclines are known to be NS3 helicase inhibitors and have a hydroxyanthraquinone moiety in their structures; mitoxantrone, a hydroxyanthraquinone analogue, is also known to inhibit NS3 helicase. Therefore, we hypothesized that the hydroxyanthraquinone moiety alone could also inhibit NS3 helicase. Here, we performed a structure–activity relationship study on a series of hydroxyanthraquinones by using a fluorescence-based helicase assay. Hydroxyanthraquinones inhibited NS3 helicase with IC50 values in the micromolar range. The inhibitory activity varied depending on the number and position of the phenolic hydroxyl groups, and among different hydroxyanthraquinones examined, 1,4,5,8-tetrahydroxyanthraquinone strongly inhibited NS3 helicase with an IC50 value of 6 µM. Furthermore, hypericin and sennidin A, which both have two hydroxyanthraquinone-like moieties, were found to exert even stronger inhibition with IC50 values of 3 and 0.8 µM, respectively. These results indicate that the hydroxyanthraquinone moiety can inhibit NS3 helicase and suggest that several key chemical structures are important for the inhibition. PMID:26262613

Identification of Hydroxyanthraquinones as Novel Inhibitors of Hepatitis C Virus NS3 Helicase

Directory of Open Access Journals (Sweden)

Atsushi Furuta

2015-08-01

Full Text Available Hepatitis C virus (HCV is an important etiological agent of severe liver diseases, including cirrhosis and hepatocellular carcinoma. The HCV genome encodes nonstructural protein 3 (NS3 helicase, which is a potential anti-HCV drug target because its enzymatic activity is essential for viral replication. Some anthracyclines are known to be NS3 helicase inhibitors and have a hydroxyanthraquinone moiety in their structures; mitoxantrone, a hydroxyanthraquinone analogue, is also known to inhibit NS3 helicase. Therefore, we hypothesized that the hydroxyanthraquinone moiety alone could also inhibit NS3 helicase. Here, we performed a structure–activity relationship study on a series of hydroxyanthraquinones by using a fluorescence-based helicase assay. Hydroxyanthraquinones inhibited NS3 helicase with IC50 values in the micromolar range. The inhibitory activity varied depending on the number and position of the phenolic hydroxyl groups, and among different hydroxyanthraquinones examined, 1,4,5,8-tetrahydroxyanthraquinone strongly inhibited NS3 helicase with an IC50 value of 6 µM. Furthermore, hypericin and sennidin A, which both have two hydroxyanthraquinone-like moieties, were found to exert even stronger inhibition with IC50 values of 3 and 0.8 µM, respectively. These results indicate that the hydroxyanthraquinone moiety can inhibit NS3 helicase and suggest that several key chemical structures are important for the inhibition.

Development of the HERA-Β-target-control system and study of target operation at the HERA storage ring

International Nuclear Information System (INIS)

Issever, S.

2001-03-01

The HERA-B experiment investigates the physics of heavy quarks, which are produced in pN reactions of the 920 GeV protons of HERA with the HERA-B internal fixed target. It consists out of eight wires, which surround the proton beam from four sides and is a high luminosity particle source. As being the closest mechanical device to the proton beam, it has to be operated very carefully and thus needs a secure and automatic control system, which additionally must be efficient and reliable to guarantee an efficient HERA-B data taking. The implementation of the target control system and its performance as well as dedicated studies of target-beam physics are presented. These include the measurement of the aperture limitation, usual target operational position, target efficiency, target independent proton loss in HERA and the scrape velocity of the target. The source of rate fluctuations is investigated in detail; among many dependencies environmental noise has a major impact on the rate fluctuations. Further studies include the analysis of beam position fluctuations and its correlation to the rate fluctuations; the rate changes about a factor of 2, if the beam is changing its position by 10 μm. This rate sensitivity is also verified directly by means of step function measurements. Furthermore the step function measurements can be used to study target-beam dynamics on time scales as short as a second. Experiments to reduce the rate sensitivity - the so called beam tail shaping measurements - are presented as well. During target operation a current, which is proportional to the interaction rate, is measured and used to determine the rate of each single wire. It is shown, that the source of this current is delta electron production. Finally the multiwire performance of the target control system is presented. (orig.)

Measurements of Jets and αs at HERA

International Nuclear Information System (INIS)

Bunyatyan, Armen

2009-01-01

Jet production in electron-proton scattering at HERA provides an important testing ground for Quantum Chromodynamics and allows improved determinations of the strong coupling, α s . A review of recent measurements of jet cross sections in photoproduction and neutral current DIS (NC DIS) at HERA is presented, and the latest determinations of α s are shown.

Preservation of the HERA-B Collaboration heritage

International Nuclear Information System (INIS)

Ozerov, Dmitry; Rostovtseva, Irina; Goloubkov, Dmitri

2011-01-01

We present the concept of the data preservation developed for the HERA-B experiment which studied proton-nucleus interactions of the 920 GeV/c beam at HERA/DESY. The full analysis chain (starting from raw data) is to be preserved based on the rolling DPHEP model with open access to the data. We have frozen the full working analysis software environment using chroot-jail virtualization and report first experience of porting the software to a newer OS/compiler.

Nuclei at HERA and heavy ion physics

International Nuclear Information System (INIS)

Gavin, S.; Strikman, M.

1995-01-01

Copies of 16 viewgraph sets from a workshop held at Brookhaven National Laboratory, 17-18 November, 1995. Titles of talks: HERA: The Present; HERA: Potential with Nuclei; Review of Hadron-Lepton Nucleus Data; Fermilab E665: results in muon scattering; Interactions of Quarks and Gluons with Nuclear Matter; Rescattering in Nuclear Targets for Photoproduction and DIS; Structure Functions and Nuclear Effect at PHENIX; Probing Spin-Averaged and Spin-Dependent Parton Distributions Using the Solenoidal Tracker at RHIC (STAR); Jet Quenching in eA, pA, AA; Nuclear Gluon Shadowing via Continuum Lepton Pairs; What can we learn from HERA with a colliding heavy ion beam? The limiting curve of leading particles at infinite A; Coherent Production of Vector Mesons off Light Nuclei in DIS; A Model of High Parton Densities in PQCD; Gluon Production for Weizaecker-Williams Field in Nucleus-Nucleus Collisions; Summary Talk

Physics at HERA

International Nuclear Information System (INIS)

Wolf, G.

1985-06-01

The author reviews the physics, which can be studied by the HERA storage ring. Especially he considers deep inelastic electron scattering from protons, the production of new particles like heavy quarks, additional vector bosons, Higgs bosons, excited quarks and leptons, leptoquarks, and supersymmetric particles, as well as the detection of new processes. (HSI)

A Brownian motor mechanism of translocation and strand separation by hepatitis C virus helicase.

Science.gov (United States)

Levin, Mikhail K; Gurjar, Madhura; Patel, Smita S

2005-05-01

Helicases translocate along their nucleic acid substrates using the energy of ATP hydrolysis and by changing conformations of their nucleic acid-binding sites. Our goal is to characterize the conformational changes of hepatitis C virus (HCV) helicase at different stages of ATPase cycle and to determine how they lead to translocation. We have reported that ATP binding reduces HCV helicase affinity for nucleic acid. Now we identify the stage of the ATPase cycle responsible for translocation and unwinding. We show that a rapid directional movement occurs upon helicase binding to DNA in the absence of ATP, resulting in opening of several base pairs. We propose that HCV helicase translocates as a Brownian motor with a simple two-stroke cycle. The directional movement step is fueled by single-stranded DNA binding energy while ATP binding allows for a brief period of random movement that prepares the helicase for the next cycle.

What HERA may provide?

Energy Technology Data Exchange (ETDEWEB)

Jung, Hannes [DESY, Hamburg (Germany); De Roeck, Albert [CERN, Genf (Switzerland); Bartles, Jochen [Univ. Hamburg (DE). Institut fuer Theoretische Physik II] (and others)

2008-09-15

More than 100 people participated in a discussion session at the DIS08 workshop on the topic What HERA may provide. A summary of the discussion with a structured outlook and list of desirable measurements and theory calculations is given. (orig.)

What HERA may provide?

International Nuclear Information System (INIS)

Jung, Hannes; De Roeck, Albert; Bartles, Jochen

2008-09-01

More than 100 people participated in a discussion session at the DIS08 workshop on the topic What HERA may provide. A summary of the discussion with a structured outlook and list of desirable measurements and theory calculations is given. (orig.)

Structure-Based Mutational Analysis of the Hepatitis C Virus NS3 Helicase

Science.gov (United States)

Tai, Chun-Ling; Pan, Wen-Ching; Liaw, Shwu-Huey; Yang, Ueng-Cheng; Hwang, Lih-Hwa; Chen, Ding-Shinn

2001-01-01

The carboxyl terminus of the hepatitis C virus (HCV) nonstructural protein 3 (NS3) possesses ATP-dependent RNA helicase activity. Based on the conserved sequence motifs and the crystal structures of the helicase domain, 17 mutants of the HCV NS3 helicase were generated. The ATP hydrolysis, RNA binding, and RNA unwinding activities of the mutant proteins were examined in vitro to determine the functional role of the mutated residues. The data revealed that Lys-210 in the Walker A motif and Asp-290, Glu-291, and His-293 in the Walker B motif were crucial to ATPase activity and that Thr-322 and Thr-324 in motif III and Arg-461 in motif VI significantly influenced ATPase activity. When the pairing between His-293 and Gln-460, referred to as gatekeepers, was replaced with the Asp-293/His-460 pair, which makes the NS3 helicase more like the DEAD helicase subgroup, ATPase activity was not restored. It thus indicated that the whole microenvironment surrounding the gatekeepers, rather than the residues per se, was important to the enzymatic activities. Arg-461 and Trp-501 are important residues for RNA binding, while Val-432 may only play a coadjutant role. The data demonstrated that RNA helicase activity was possibly abolished by the loss of ATPase activity or by reduced RNA binding activity. Nevertheless, a low threshold level of ATPase activity was found sufficient for helicase activity. Results in this study provide a valuable reference for efforts under way to develop anti-HCV therapeutic drugs targeting NS3. PMID:11483774

Functions of DEAD-box proteins in bacteria: current knowledge and pending questions.

Science.gov (United States)

Iost, Isabelle; Bizebard, Thierry; Dreyfus, Marc

2013-08-01

DEAD-box proteins are RNA-dependent ATPases that are widespread in all three kingdoms of life. They are thought to rearrange the structures of RNA or ribonucleoprotein complexes but their exact mechanism of action is rarely known. Whereas in yeast most DEAD-box proteins are essential, no example of an essential bacterial DEAD-box protein has been reported so far; at most, their absence results in cold-sensitive growth. Moreover, whereas yeast DEAD-box proteins are implicated in virtually all reactions involving RNA, in E. coli (the bacterium where DEAD-box proteins have been mostly studied) their role is limited to ribosome biogenesis, mRNA degradation, and possibly translation initiation. Plausible reasons for these differences are discussed here. In spite of their dispensability, E. coli DEAD-box proteins are valuable models for the mechanism of action of DEAD-box proteins in general because the reactions in which they participate can be reproduced in vitro. Here we review our present understanding of this mechanism of action. Using selected examples for which information is available: (i) we describe how, by interacting directly with a particular RNA motif or by binding to proteins that themselves recognize such a motif, DEAD-box proteins are brought to their specific RNA substrate(s); (ii) we discuss the nature of the structural transitions that DEAD-box proteins induce on their substrates; and (iii) we analyze the reasons why these proteins are mostly important at low temperatures. This article is part of a Special Issue entitled: The Biology of RNA helicases-Modulation for life. Copyright © 2013 Elsevier B.V. All rights reserved.

Search for leptoquarks at HERA

Energy Technology Data Exchange (ETDEWEB)

Huettmann, Antje

2009-10-15

A search for first generation leptoquarks was performed in polarized electron-proton collider data recorded with the ZEUS detector at HERA in the years 2003-2007. They were analyzed for final states with an electron and jets or with missing transverse momentum and jets and a search for resonance structures or other deviations from the Standard Model predictions in the spectra of the invariant mass of lepton and jets was performed. No evidence for leptoquark signals was found. The data were combined with the previously taken data at HERA corresponding to an integrated luminosity of 488 pb{sup -1} and limits were set on the Yukawa coupling {lambda} as a function of the leptoquark mass for different leptoquark types within the Buchmueller-Rueckl-Wyler model. (orig.)

DESY: All superconducting magnets in place for HERA

International Nuclear Information System (INIS)

Anon.

1990-01-01

On 19 September the last of the 646 superconducting magnets for the proton ring of the HERA electron-proton collider was placed in position in the 6.4 kilometre tunnel at the German DESY Laboratory in Hamburg. The different sections of the cryogenic ring are being cooled down, and all magnet connections should be complete by 8 November for the official ceremony marking the end of HERA construction and installation

HERA-B framework for online calibration and alignment

International Nuclear Information System (INIS)

Hernandez, J.M.; Ressing, D.; Rybnikov, V.; Sanchez, F.; Medinnis, M.; Kreuzer, P.; Schwanke, U.; Amorim, A.

2004-09-01

This paper describes the architecture and implementation of the HERA-B framework for online calibration and alignment. At HERA-B the performance of all trigger levels, including the online reconstruction, strongly depends on using the appropriate calibration and alignment constants, which might change during data taking. A system to monitor, recompute and distribute those constants to online processes has been integrated in the data acquisition and trigger systems. (orig.)

First Polarized Power Spectra from HERA-19 Commissioning Data: Comparison with Simulations

Science.gov (United States)

Igarashi, Amy; Chichura, Paul; Fox Fortino, Austin; Kohn, Saul; Aguirre, James; HERA Collaboration, CHAMP

2018-01-01

The Hydrogen Epoch of Reionization Array (HERA) is a radio telescope whose primary goal is the detection of redshifted 21-cm line radiation produced from the spin-flip transition of HI during the Epoch of Reionization (EoR). HERA is currently under construction in South Africa, and will eventually be an array of 350 14-m antennas. HERA aims for a statistical detection of the power spectrum of this emission, using the so-called delay spectrum technique (Parsons et al 2012). We examine a first season of commissioning data from the first 19 elements (HERA-19) to characterize Galactic and extragalactic foregrounds. We compare the delay spectrum for HERA-19 constructed from data to those constructed from simulations done using a detailed instrument electromagnetic model and using the unpolarized Global Sky Model (GSM2008). We compare the data and simulations to explore the effects of Stokes-I to Q and U leakage, and further examine whether statistical models of polarization match the observed polarized power spectra.

Results from the H1 experiment at HERA

International Nuclear Information System (INIS)

Krasny, M.W.

1993-01-01

Results obtained by the H1 collaboration at HERA from the analysis of the data collected in 1992 - the first year of HERA operation are presented. Measurements of the total photoproduction cross-section and the inclusive jet cross-section in γp scattering, the structure function F 2 (x,Q 2 ) and the jet rates in deep inelastic ep scattering, and results of direct searches for leptoquarks are discussed. (author) 37 refs., 6 figs

The processor farm for online triggering and full event reconstruction of the HERA-B experiment at HERA

International Nuclear Information System (INIS)

Gellrich, A.; Dippel, R.; Gensch, U.; Kowallik, R.; Legrand, I.C.; Leich, H.; Sun, F.; Wegner, P.

1996-01-01

The main goal of the HERA-B experiment which start taking data in 1988 is to study CP violation in B decays. This article describes the concept and the planned implementation of a multi-processor system, called processor farm,as the last part of the data acquisition and trigger system of the HERA B experiment. The third level trigger task and a full online event reconstruction will be performed on this processor farm, consisting of more then 100 powerful RISC processors which are based on commercial hardware boards. The controlling will be done by a real-time operating system which provides a software development environment, including FORTRAN and C compilers. (author)

Leading Hadron Production at HERA

Directory of Open Access Journals (Sweden)

Buniatyan Armen

2013-06-01

Full Text Available Data from the recent measurements of very forward baryon and photon production with the H1 and ZEUS detectors at electron-proton collider HERA are presented and compared to the theoretical calculations and Monte Carlo models. Results are presented of the production of leading protons, neutrons and photons in deep inelastic scattering (ep → e' pX, ep → e'nX, ep → e'γX as well as the leading neutron production in the photoproduction of dijets (ep → ejjXn. The forward baryon and photon results from the H1 and ZEUS Experiments are compared also with the models of the hadronic interactions of high energy Cosmic Rays. The sensitivity of the HERA data to the differences between the models is demonstrated.

Distinct functions of human RecQ helicases during DNA replication.

Science.gov (United States)

Urban, Vaclav; Dobrovolna, Jana; Janscak, Pavel

2017-06-01

DNA replication is the most vulnerable process of DNA metabolism in proliferating cells and therefore it is tightly controlled and coordinated with processes that maintain genomic stability. Human RecQ helicases are among the most important factors involved in the maintenance of replication fork integrity, especially under conditions of replication stress. RecQ helicases promote recovery of replication forks being stalled due to different replication roadblocks of either exogenous or endogenous source. They prevent generation of aberrant replication fork structures and replication fork collapse, and are involved in proper checkpoint signaling. The essential role of human RecQ helicases in the genome maintenance during DNA replication is underlined by association of defects in their function with cancer predisposition. Copyright © 2016 Elsevier B.V. All rights reserved.

The rise in F$_{2}^{p}$ at HERA

CERN Document Server

Ball, Richard D.; Forte, S

1994-01-01

We show that the rise in F_2^p at small x and large Q^2 seen at HERA is indeed the non-Regge double asymptotic scaling behaviour expected from the perturbative emission of strongly ordered hard gluons. An alternative explanation, in which there is no strong ordering, and a new hard Reggeon is generated, is also tried but found wanting: its theoretical short-comings are betrayed by its failure to properly account for the HERA data.

The HERA physics programme

International Nuclear Information System (INIS)

Saxon, D.H.

1991-09-01

The construction of the HERA accelerator and its detectors H1 and ZEUS opens up new physic regimes to explore at high-Q 2 and low-x. The physics interest and methods of exploration are described, starting from the environment provided by the accelerator and the reaction kinematics. (orig.)

GINS complex protein Sld5 recruits SIK1 to activate MCM helicase during DNA replication.

Science.gov (United States)

Joshi, Kiranmai; Shah, Varun Jayeshkumar; Maddika, Subbareddy

2016-12-01

In eukaryotes, proper loading and activation of MCM helicase at chromosomal origins plays a central role in DNA replication. Activation of MCM helicase requires its association with CDC45-GINS complex, but the mechanism of how this complex activates MCM helicase is poorly understood. Here we identified SIK1 (salt-inducible kinase 1), an AMPK related protein kinase, as a molecular link that connects GINS complex with MCM helicase activity. We demonstrated that Sld5 a component of GINS complex interacts with SIK1 and recruits it to the sites of DNA replication at the onset of S phase. Depletion of SIK1 leads to defective DNA replication. Further, we showed that SIK1 phosphorylates MCM2 at five conserved residues at its N-terminus, which is essential for the activation of MCM helicase. Collectively, our results suggest SIK1 as a novel integral component of CMG replicative helicase during eukaryotic DNA replication. Copyright © 2016 Elsevier Inc. All rights reserved.

Inhibition of RNA Helicases of ssRNA+ Virus Belonging to Flaviviridae, Coronaviridae and Picornaviridae Families

Directory of Open Access Journals (Sweden)

Irene Briguglio

2011-01-01

Full Text Available Many viral pathogens encode the motor proteins named RNA helicases which display various functions in genome replication. General strategies to design specific and selective drugs targeting helicase for the treatment of viral infections could act via one or more of the following mechanisms: inhibition of the NTPase activity, by interferences with ATP binding and therefore by limiting the energy required for the unwinding and translocation, or by allosteric mechanism and therefore by stabilizing the conformation of the enzyme in low helicase activity state; inhibition of nucleic acids binding to the helicase; inhibition of coupling of ATP hydrolysis to unwinding; inhibition of unwinding by sterically blocking helicase translocation. Recently, by in vitro screening studies, it has been reported that several benzotriazole, imidazole, imidazodiazepine, phenothiazine, quinoline, anthracycline, triphenylmethane, tropolone, pyrrole, acridone, small peptide, and Bananin derivatives are endowed with helicase inhibition of pathogen viruses belonging to Flaviviridae, Coronaviridae, and Picornaviridae families.

Physical and functional interactions of Caenorhabditis elegans WRN-1 helicase with RPA-1.

Science.gov (United States)

Hyun, Moonjung; Park, Sojin; Kim, Eunsun; Kim, Do-Hyung; Lee, Se-Jin; Koo, Hyeon-Sook; Seo, Yeon-Soo; Ahn, Byungchan

2012-02-21

The Caenorhabditis elegans Werner syndrome protein, WRN-1, a member of the RecQ helicase family, has a 3'-5' DNA helicase activity. Worms with defective wrn-1 exhibit premature aging phenotypes and an increased level of genome instability. In response to DNA damage, WRN-1 participates in the initial stages of checkpoint activation in concert with C. elegans replication protein A (RPA-1). WRN-1 helicase is stimulated by RPA-1 on long DNA duplex substrates. However, the mechanism by which RPA-1 stimulates DNA unwinding and the function of the WRN-1-RPA-1 interaction are not clearly understood. We have found that WRN-1 physically interacts with two RPA-1 subunits, CeRPA73 and CeRPA32; however, full-length WRN-1 helicase activity is stimulated by only the CeRPA73 subunit, while the WRN-1(162-1056) fragment that harbors the helicase activity requires both the CeRPA73 and CeRPA32 subunits for the stimulation. We also found that the CeRPA73(1-464) fragment can stimulate WRN-1 helicase activity and that residues 335-464 of CeRPA73 are important for physical interaction with WRN-1. Because CeRPA73 and the CeRPA73(1-464) fragment are able to bind single-stranded DNA (ssDNA), the stimulation of WRN-1 helicase by RPA-1 is most likely due to the ssDNA binding activity of CeRPA73 and the direct interaction of WRN-1 and CeRPA73.

MCM Paradox: Abundance of Eukaryotic Replicative Helicases and Genomic Integrity.

Science.gov (United States)

Das, Mitali; Singh, Sunita; Pradhan, Satyajit; Narayan, Gopeshwar

2014-01-01

As a crucial component of DNA replication licensing system, minichromosome maintenance (MCM) 2-7 complex acts as the eukaryotic DNA replicative helicase. The six related MCM proteins form a heterohexamer and bind with ORC, CDC6, and Cdt1 to form the prereplication complex. Although the MCMs are well known as replicative helicases, their overabundance and distribution patterns on chromatin present a paradox called the "MCM paradox." Several approaches had been taken to solve the MCM paradox and describe the purpose of excess MCMs distributed beyond the replication origins. Alternative functions of these MCMs rather than a helicase had also been proposed. This review focuses on several models and concepts generated to solve the MCM paradox coinciding with their helicase function and provides insight into the concept that excess MCMs are meant for licensing dormant origins as a backup during replication stress. Finally, we extend our view towards the effect of alteration of MCM level. Though an excess MCM constituent is needed for normal cells to withstand stress, there must be a delineation of the threshold level in normal and malignant cells. This review also outlooks the future prospects to better understand the MCM biology.

New experimental results at HERA

International Nuclear Information System (INIS)

Kuhlen, M.

1994-10-01

Recent measurements by the ZEUS and H1 collaborations of the hadronic final state in deep inelastic scattering at HERA are reviewed. QCD is studied by means of charged particle spectra, jet rates and inclusive energy flows. (orig.)

H1 at HERA Exhibition

CERN Multimedia

2000-01-01

H1 is one of the two large detectors installed at HERA, the first electron-proton accelerator, located at DESY in Hamburg. The H1 collaboration regroups physicists from 32institutes of 11countries all over the world.

Hard scattering of (almost) real photons at HERA

International Nuclear Information System (INIS)

Jong, S.J. de; Engelen, J.J.

1988-01-01

High P T photoproduction will play an important role at HERA, both as interesting physics in its own right and as a background. Photoproduction reactions producing large transverse momenta will be reviewed, as well as the possibility of using them for tests of perturbative QCD. Pointlike coupling of the photon to the proton constituents will be considered in detail in leading log approximation. Although the cross sections of these processes, photon gluon fusion and QCD Compton scattering, get their largest contribution from low Q 2 (almost) real photons, we calculate them over the full Q 2 range. Photoproduction as a background to the standard deep inelastic physics at HERA and to exotic phenomena is discussed. Heavy flavour production through photon gluon fusion may offer good possibilities of studying charm and bottom quarks. An attempt is made to determine a possible strategy to identify the top quark at HERA. 29 refs.; 20 figs.; 7 tabs

The HERA polarimeter and the first observation of electron spin polarization at HERA

International Nuclear Information System (INIS)

Barber, D.P.; Bremer, H.D.; Boege, M.; Brinkmann, R.; Gianfelice-Wendt, E.; Kaiser, H.; Klanner, R.; Lewin, H.C.; Meyners, N.; Vogel, W.; Brueckner, W.; Buescher, C.; Dueren, M.; Gaul, H.G.; Muecklich, A.; Neunreither, F.; Rith, K.; Scholz, C.; Steffens, E.; Veltri, M.; Wander, W.; Zapfe, K.; Zetsche, F.; Chapman, M.; Milner, R.; Coulter, K.; Delheij, P.P.J.; Haeusser, O.; Henderson, R.; Levy, P.; Vetterli, M.; Gressmann, H.; Janke, T.; Micheel, B.; Westphal, D.; Kaiser, R.; Losev, L.; Nowak, W.D.

1992-10-01

Electron spin polarizations of about 8% were observed at HERA in November 1991. In runs during 1992 utilizing special orbit corrections, polarization values close to 60% have been achieved. In this paper the polarimeter, the machine conditions, the data analysis, the first results and plans for future measurements are described. (orig.)

Structure functions and low Q2 physics at HERA

International Nuclear Information System (INIS)

Roeck, A. de; Klein, M.

1991-12-01

Important new insights into the hadron structure are expected from the data which will be collected at the electron-proton storage ring HERA at DESY, Hamburg. In this paper the physics opportunities for cross section related measurements at HERA are reviewed. Emphasis is put on the derivation of the proton structure functions, on the QCD effects expected in the newly accessible low χ region and on almost real photoproduction physics. (orig.)

Photoproduction of multi-jet events at HERA: A Monte Carlo simulation

International Nuclear Information System (INIS)

Butterworth, J.M.; Forshaw, J.R.

1993-07-01

We study the regime of high-energy photoproduction, currently under exploration at the DESY ep Collider, HERA. In particular we discuss the possible production of more than one pair of 'back-to-back' jets which may occur at reasonably high-p T as a consequence of the high parton density regime opened up at HERA centre-of-mass energies. We describe the construction of a multi-jet event generator based upon leading order QCD perturbation theory and an eikonal formalism, and show that the effect of multiple parton interactions on event shapes at HERA could indeed be significant. (orig.)

Helicase and Polymerase Move Together Close to the Fork Junction and Copy DNA in One-Nucleotide Steps

Directory of Open Access Journals (Sweden)

Manjula Pandey

2014-03-01

Full Text Available By simultaneously measuring DNA synthesis and dNTP hydrolysis, we show that T7 DNA polymerase and T7 gp4 helicase move in sync during leading-strand synthesis, taking one-nucleotide steps and hydrolyzing one dNTP per base-pair unwound/copied. The cooperative catalysis enables the helicase and polymerase to move at a uniformly fast rate without guanine:cytosine (GC dependency or idling with futile NTP hydrolysis. We show that the helicase and polymerase are located close to the replication fork junction. This architecture enables the polymerase to use its strand-displacement synthesis to increase the unwinding rate, whereas the helicase aids this process by translocating along single-stranded DNA and trapping the unwound bases. Thus, in contrast to the helicase-only unwinding model, our results suggest a model in which the helicase and polymerase are moving in one-nucleotide steps, DNA synthesis drives fork unwinding, and a role of the helicase is to trap the unwound bases and prevent DNA reannealing.

RecQ helicases and cellular responses to DNA damage

International Nuclear Information System (INIS)

Wu, Leonard; Hickson, Ian D.

2002-01-01

The faithful replication of the genome is essential for the survival of all organisms. It is not surprising therefore that numerous mechanisms have evolved to ensure that duplication of the genome occurs with only minimal risk of mutation induction. One mechanism of genome destabilization is replication fork demise, which can occur when a translocating fork meets a lesion or adduct in the template. Indeed, the collapse of replication forks has been suggested to occur in every replicative cell cycle making this a potentially significant problem for all proliferating cells. The RecQ helicases, which are essential for the maintenance of genome stability, are thought to function during DNA replication. In particular, RecQ helicase mutants display replication defects and have phenotypes consistent with an inability to efficiently reinitiate replication following replication fork demise. Here, we review some current models for how replication fork repair might be effected, and discuss potential roles for RecQ helicases in this process

A role for the fission yeast Rqh1 helicase in chromosome segregation

DEFF Research Database (Denmark)

Win, Thein Z; Mankouri, Hocine W; Hickson, Ian D

2005-01-01

Schizosaccharomyces pombe Rqh1 protein is a member of the RecQ DNA helicase family. Members of this protein family are mutated in several human genome instability syndromes, including Bloom, Werner and Rothmund-Thomson syndromes. RecQ helicases participate in recombination repair of stalled...

XPD Helicase Structures and Activities: Insights into the Cancer and Aging Phenotypes from XPD Mutations

Energy Technology Data Exchange (ETDEWEB)

Tainer, John; Fan, Li; Fuss, Jill O.; Cheng, Quen J.; Arvai, Andrew S.; Hammel, Michal; Roberts, Victoria A.; Cooper, Priscilla K.; Tainer, John A.

2008-06-02

Mutations in XPD helicase, required for nucleotide excision repair (NER) as part of the transcription/repair complex TFIIH, cause three distinct phenotypes: cancer-prone xeroderma pigmentosum (XP), or aging disorders Cockayne syndrome (CS), and trichothiodystrophy (TTD). To clarify molecular differences underlying these diseases, we determined crystal structures of the XPD catalytic core from Sulfolobus acidocaldarius and measured mutant enzyme activities. Substrate-binding grooves separate adjacent Rad51/RecA-like helicase domains (HD1, HD2) and an arch formed by 4FeS and Arch domains. XP mutations map along the HD1 ATP-binding edge and HD2 DNA-binding channel and impair helicase activity essential for NER. XP/CS mutations both impair helicase activity and likely affect HD2 functional movement. TTD mutants lose or retain helicase activity but map to sites in all four domains expected to cause framework defects impacting TFIIH integrity. These results provide a foundation for understanding disease consequences of mutations in XPD and related 4Fe-4S helicases including FancJ.

XPD Helicase Structures And Activities: Insights Into the Cancer And Aging Phenotypes From XPD Mutations

Energy Technology Data Exchange (ETDEWEB)

Fan, L.; Fuss, J.O.; Cheng, Q.J.; Arvai, A.S.; Hammel, M.; Roberts, V.A.; Cooper, P.K.; Tainer, J.A.

2009-05-18

Mutations in XPD helicase, required for nucleotide excision repair (NER) as part of the transcription/repair complex TFIIH, cause three distinct phenotypes: cancer-prone xeroderma pigmentosum (XP), or aging disorders Cockayne syndrome (CS), and trichothiodystrophy (TTD). To clarify molecular differences underlying these diseases, we determined crystal structures of the XPD catalytic core from Sulfolobus acidocaldarius and measured mutant enzyme activities. Substrate-binding grooves separate adjacent Rad51/RecA-like helicase domains (HD1, HD2) and an arch formed by 4FeS and Arch domains. XP mutations map along the HD1 ATP-binding edge and HD2 DNA-binding channel and impair helicase activity essential for NER. XP/CS mutations both impair helicase activity and likely affect HD2 functional movement. TTD mutants lose or retain helicase activity but map to sites in all four domains expected to cause framework defects impacting TFIIH integrity. These results provide a foundation for understanding disease consequences of mutations in XPD and related 4Fe-4S helicases including FancJ.

Tau Lepton Production in ep Collisions at HERA

OpenAIRE

Aktas, A.; Andreev, V.; Anthonis, T.; Antunovic, B.; Aplin, S.; Asmone, A.; Astvatsatourov, A.; Babaev, A.; Backovic, S.; Baghdasaryan, A.; Baranov, P.; Barrelet, E.; Bartel, W.; Baudrand, S.; Baumgartner, S.

2006-01-01

The production of tau leptons in ep collisions is investigated using data recorded by the H1 detector at HERA in the period 1994-2000. Tau leptons are identified by detecting their decay products, using leptonic and hadronic decay modes. The cross section for the production of tau lepton pairs is measured for the first time at HERA. Furthermore, a search for events with an energetic isolated tau lepton and with large missing transverse momentum is performed. The results are found to be in agr...

DESY: HERA looks back, and forward

International Nuclear Information System (INIS)

Anon.

1994-01-01

The HERA electron-proton collider at the DESY Laboratory in Hamburg has completed a successful second year of operation, with achievements and progress so far promising well for 1994. The collider was commissioned in October 1991 and during the winter 1991-92 shutdown the two major experiments (H1 and ZEUS) were installed in the ring. HERA commissioning resumed in April 1992 and by the end of June the experiments had their first meals of electron-proton collisions. 1992 peak luminosity with nine colliding bunches in each ring was roughly 2x10 29 cm -2 s -1 . By the end of that year a total integrated luminosity of 58 nb -1 had been delivered to each of the experiments, with 25 nb -1 recorded

Crystal structures of the methyltransferase and helicase from the ZIKA 1947 MR766 Uganda strain

Energy Technology Data Exchange (ETDEWEB)

Bukrejewska, Malgorzata; Derewenda, Urszula; Radwanska, Malwina; Engel, Daniel A.; Derewenda, Zygmunt S.

2017-08-15

Two nonstructural proteins encoded byZika virusstrain MR766 RNA, a methyltransferase and a helicase, were crystallized and their structures were solved and refined at 2.10 and 2.01 Å resolution, respectively. The NS5 methyltransferase contains a boundS-adenosyl-L-methionine (SAM) co-substrate. The NS3 helicase is in the apo form. Comparison with published crystal structures of the helicase in the apo, nucleotide-bound and single-stranded RNA (ssRNA)-bound states suggests that binding of ssRNA to the helicase may occur through conformational selection rather than induced fit.

Germline mutations of regulator of telomere elongation helicase 1, RTEL1, in Dyskeratosis congenita.

Science.gov (United States)

Ballew, Bari J; Yeager, Meredith; Jacobs, Kevin; Giri, Neelam; Boland, Joseph; Burdett, Laurie; Alter, Blanche P; Savage, Sharon A

2013-04-01

Dyskeratosis congenita (DC) is an inherited bone marrow failure and cancer predisposition syndrome caused by aberrant telomere biology. The classic triad of dysplastic nails, abnormal skin pigmentation, and oral leukoplakia is diagnostic of DC, but substantial clinical heterogeneity exists; the clinically severe variant Hoyeraal Hreidarsson syndrome (HH) also includes cerebellar hypoplasia, severe immunodeficiency, enteropathy, and intrauterine growth retardation. Germline mutations in telomere biology genes account for approximately one-half of known DC families. Using exome sequencing, we identified mutations in RTEL1, a helicase with critical telomeric functions, in two families with HH. In the first family, two siblings with HH and very short telomeres inherited a premature stop codon from their mother who has short telomeres. The proband from the second family has HH and inherited a premature stop codon in RTEL1 from his father and a missense mutation from his mother, who also has short telomeres. In addition, inheritance of only the missense mutation led to very short telomeres in the proband's brother. Targeted sequencing identified a different RTEL1 missense mutation in one additional DC proband who has bone marrow failure and short telomeres. Both missense mutations affect the helicase domain of RTEL1, and three in silico prediction algorithms suggest that they are likely deleterious. The nonsense mutations both cause truncation of the RTEL1 protein, resulting in loss of the PIP box; this may abrogate an important protein-protein interaction. These findings implicate a new telomere biology gene, RTEL1, in the etiology of DC.

Report from the ZEUS Collaboration at HERA

Energy Technology Data Exchange (ETDEWEB)

Abramowicz, H. [Weizmann Institute of Science, Rehovot (Israel)

1994-12-01

This is a short overview of the results obtained by the ZEUS Collaboration with data collected during HERA`s first year and corresponding to an integrated luminosity of 25 nb{sup {minus}1}. Included are the measurement of the total, partial, and {rho} photoproduction cross sections, a study of high mass diffractive photoproduction, new results from hard photoproduction where a clear signal of a direct photon contribution has been established, the measurement of the photon structure function F{sub 2}, and first results on diffractive dissociation of the virtual photon in the deep inelastic electron photon scattering. Limits on leptoquarks and excited electrons are also presented.

Tau Lepton Production in ep Collisions at HERA

CERN Document Server

Aktas, A.; Anthonis, T.; Antunovic, B.; Aplin, S.; Asmone, A.; Astvatsatourov, A.; Babaev, A.; Backovic, S.; Baghdasaryan, A.; Baranov, P.; Barrelet, E.; Bartel, W.; Baudrand, S.; Baumgartner, S.; Becker, J.; Beckingham, M.; Behnke, O.; Behrendt, O.; Belousov, A.; Berger, N.; Bizot, J.C.; Boenig, M.-O.; Boudry, V.; Bracinik, J.; Brandt, G.; Brisson, V.; Bruncko, D.; Busser, F.W.; Bunyatyan, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Cassol-Brunner, F.; Cerny, K.; Cerny, V.; Chekelian, V.; Contreras, J.G.; Coughlan, J.A.; Cox, B.E.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Dau, W.D.; Daum, K.; de Boer, Y.; Delcourt, B.; Del Degan, M.; De Roeck, A.; De Wolf, E.A.; Diaconu, C.; Dodonov, V.; Dubak, A.; Eckerlin, Guenter; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Eliseev, A.; Elsen, E.; Essenov, S.; Falkewicz, A.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Felst, R.; Feltesse, J.; Ferencei, J.; Finke, L.; Fleischer, M.; Flucke, G.; Fomenko, A.; Franke, G.; Frisson, T.; Gabathuler, E.; Garutti, E.; Gayler, J.; Gerlich, C.; Ghazaryan, Samvel; Ginzburgskaya, S.; Glazov, A.; Glushkov, I.; Goerlich, L.; Goettlich, M.; Gogitidze, N.; Gorbounov, S.; Grab, C.; Greenshaw, T.; Gregori, M.; Grell, B.R.; Grindhammer, G.; Gwilliam, C.; Haidt, D.; Hajduk, L.; Hansson, M.; Heinzelmann, G.; Henderson, R.C.W.; Henschel, H.; Herrera, G.; Hildebrandt, M.; Hiller, K.H.; Hoffmann, D.; Horisberger, R.; Hovhannisyan, A.; Hreus, T.; Hussain, S.; Ibbotson, M.; Ismail, M.; Jacquet, M.; Janauschek, L.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, D.P.; Jung, Andreas Werner; Jung, H.; Kapichine, M.; Katzy, J.; Kenyon, I.R.; Kiesling, Christian M.; Klein, M.; Kleinwort, C.; Klimkovich, T.; Kluge, T.; Knies, G.; Knutsson, A.; Korbel, V.; Kostka, P.; Krastev, K.; Kretzschmar, J.; Kropivnitskaya, A.; Kruger, K.; Landon, M.P.J.; Lange, W.; Lastovicka-Medin, G.; Laycock, P.; Lebedev, A.; Leibenguth, G.; Lendermann, V.; Levonian, S.; Lindfeld, L.; Lipka, K.; Liptaj, A.; List, B.; List, J.; Lobodzinska, E.; Loktionova, N.; Lopez-Fernandez, R.; Lubimov, V.; Lucaci-Timoce, A.-I.; Lueders, H.; Luke, D.; Lux, T.; Lytkin, L.; Makankine, A.; Malden, N.; Malinovski, E.; Mangano, S.; Marage, P.; Marshall, R.; Marti, L.; Martisikova, M.; Martyn, H.-U.; Maxfield, S.J.; Mehta, A.; Meier, K.; Meyer, A.B.; Meyer, H.; Meyer, J.; Michels, V.; Mikocki, S.; Milcewicz-Mika, I.; Milstead, D.; Mladenov, D.; Mohamed, A.; Moreau, F.; Morozov, A.; Morris, J.V.; Mozer, Matthias Ulrich; Muller, K.; Murin, P.; Nankov, K.; Naroska, B.; Naumann, Th.; Newman, Paul R.; Niebuhr, C.; Nikiforov, A.; Nowak, G.; Nowak, K.; Nozicka, M.; Oganezov, R.; Olivier, B.; Olsson, J.E.; Osman, S.; Ozerov, D.; Palichik, V.; Panagoulias, I.; Papadopoulou, T.; Pascaud, C.; Patel, G.D.; Peng, H.; Perez, E.; Perez-Astudillo, D.; Perieanu, A.; Petrukhin, A.; Pitzl, D.; Placakyte, R.; Portheault, B.; Povh, B.; Prideaux, P.; Rahmat, A.J.; Raicevic, N.; Reimer, P.; Rimmer, A.; Risler, C.; Rizvi, E.; Robmann, P.; Roland, B.; Roosen, R.; Rostovtsev, A.; Rurikova, Z.; Rusakov, S.; Salvaire, F.; Sankey, D.P.C.; Sauvan, E.; Schatzel, S.; Schmidt, S.; Schmitt, S.; Schmitz, C.; Schoeffel, L.; Schoning, A.; Schultz-Coulon, H.-C.; Sefkow, F.; Shaw-West, R.N.; Sheviakov, I.; Shtarkov, L.N.; Sloan, T.; Smirnov, P.; Soloviev, Y.; South, D.; Spaskov, V.; Specka, Arnd E.; Steder, M.; Stella, B.; Stiewe, J.; Stoilov, A.; Straumann, U.; Sunar, D.; Tchoulakov, V.; Thompson, Graham; Thompson, P.D.; Toll, T.; Tomasz, F.; Traynor, D.; Truol, P.; Tsakov, I.; Tsipolitis, G.; Tsurin, I.; Turnau, J.; Tzamariudaki, E.; Urban, K.; Urban, Marcel; Usik, A.; Utkin, D.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Vargas Trevino, A.; Vazdik, Y.; Veelken, C.; Vinokurova, S.; Volchinski, V.; Wacker, K.; Weber, G.; Weber, R.; Wegener, D.; Werner, C.; Wessels, M.; Wessling, B.; Wissing, Ch.; Wolf, R.; Wunsch, E.; Xella, S.; Yan, W.; Yeganov, V.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhelezov, A.; Zhokin, A.; Zhu, Y.C.; Zimmermann, J.; Zimmermann, T.; Zohrabyan, H.; Zomer, F.

2006-01-01

The production of tau leptons in ep collisions is investigated using data recorded by the H1 detector at HERA in the period 1994-2000. Tau leptons are identified by detecting their decay products, using leptonic and hadronic decay modes. The cross section for the production of tau lepton pairs is measured for the first time at HERA. Furthermore, a search for events with an energetic isolated tau lepton and with large missing transverse momentum is performed. The results are found to be in agreement with the Standard Model predictions.

Tau lepton production in ep collisions at HERA

Science.gov (United States)

Aktas, A.; Andreev, V.; Anthonis, T.; Antunovic, B.; Aplin, S.; Asmone, A.; Astvatsatourov, A.; Babaev, A.; Backovic, S.; Baghdasaryan, A.; Baranov, P.; Barrelet, E.; Bartel, W.; Baudrand, S.; Baumgartner, S.; Becker, J.; Beckingham, M.; Behnke, O.; Behrendt, O.; Belousov, A.; Berger, N.; Bizot, J. C.; Boenig, M.-O.; Boudry, V.; Bracinik, J.; Brandt, G.; Brisson, V.; Bruncko, D.; Büsser, F. W.; Bunyatyan, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A. J.; Cassol-Brunner, F.; Cerny, K.; Cerny, V.; Chekelian, V.; Contreras, J. G.; Coughlan, J. A.; Cox, B. E.; Cozzika, G.; Cvach, J.; Dainton, J. B.; Dau, W. D.; Daum, K.; de Boer, Y.; Delcourt, B.; Del Degan, M.; de Roeck, A.; de Wolf, E. A.; Diaconu, C.; Dodonov, V.; Dubak, A.; Eckerlin, G.; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Eliseev, A.; Elsen, E.; Essenov, S.; Falkewicz, A.; Faulkner, P. J. W.; Favart, L.; Fedotov, A.; Felst, R.; Feltesse, J.; Ferencei, J.; Finke, L.; Fleischer, M.; Flucke, G.; Fomenko, A.; Franke, G.; Frisson, T.; Gabathuler, E.; Garutti, E.; Gayler, J.; Gerlich, C.; Ghazaryan, S.; Ginzburgskaya, S.; Glazov, A.; Glushkov, I.; Goerlich, L.; Goettlich, M.; Gogitidze, N.; Gorbounov, S.; Grab, C.; Greenshaw, T.; Gregori, M.; Grell, B. R.; Grindhammer, G.; Gwilliam, C.; Haidt, D.; Hajduk, L.; Hansson, M.; Heinzelmann, G.; Henderson, R. C. W.; Henschel, H.; Herrera, G.; Hildebrandt, M.; Hiller, K. H.; Hoffmann, D.; Horisberger, R.; Hovhannisyan, A.; Hreus, T.; Hussain, S.; Ibbotson, M.; Ismail, M.; Jacquet, M.; Janauschek, L.; Janssen, X.; Jemanov, V.; Jönsson, L.; Johnson, D. P.; Jung, A. W.; Jung, H.; Kapichine, M.; Katzy, J.; Kenyon, I. R.; Kiesling, C.; Klein, M.; Kleinwort, C.; Klimkovich, T.; Kluge, T.; Knies, G.; Knutsson, A.; Korbel, V.; Kostka, P.; Krastev, K.; Kretzschmar, J.; Kropivnitskaya, A.; Krüger, K.; Landon, M. P. J.; Lange, W.; Laštovička-Medin, G.; Laycock, P.; Lebedev, A.; Leibenguth, G.; Lendermann, V.; Levonian, S.; Lindfeld, L.; Lipka, K.; Liptaj, A.; List, B.; List, J.; Lobodzinska, E.; Loktionova, N.; Lopez-Fernandez, R.; Lubimov, V.; Lucaci-Timoce, A.-I.; Lueders, H.; Lüke, D.; Lux, T.; Lytkin, L.; Makankine, A.; Malden, N.; Malinovski, E.; Mangano, S.; Marage, P.; Marshall, R.; Marti, L.; Martisikova, M.; Martyn, H.-U.; Maxfield, S. J.; Mehta, A.; Meier, K.; Meyer, A. B.; Meyer, H.; Meyer, J.; Michels, V.; Mikocki, S.; Milcewicz-Mika, I.; Milstead, D.; Mladenov, D.; Mohamed, A.; Moreau, F.; Morozov, A.; Morris, J. V.; Mozer, M. U.; Müller, K.; Murín, P.; Nankov, K.; Naroska, B.; Naumann, Th.; Newman, P. R.; Niebuhr, C.; Nikiforov, A.; Nowak, G.; Nowak, K.; Nozicka, M.; Oganezov, R.; Olivier, B.; Olsson, J. E.; Osman, S.; Ozerov, D.; Palichik, V.; Panagoulias, I.; Papadopoulou, T.; Pascaud, C.; Patel, G. D.; Peng, H.; Perez, E.; Perez-Astudillo, D.; Perieanu, A.; Petrukhin, A.; Pitzl, D.; Plačakytė, R.; Portheault, B.; Povh, B.; Prideaux, P.; Rahmat, A. J.; Raicevic, N.; Reimer, P.; Rimmer, A.; Risler, C.; Rizvi, E.; Robmann, P.; Roland, B.; Roosen, R.; Rostovtsev, A.; Rurikova, Z.; Rusakov, S.; Salvaire, F.; Sankey, D. P. C.; Sauvan, E.; Schätzel, S.; Schmidt, S.; Schmitt, S.; Schmitz, C.; Schoeffel, L.; Schöning, A.; Schultz-Coulon, H.-C.; Sefkow, F.; Shaw-West, R. N.; Sheviakov, I.; Shtarkov, L. N.; Sloan, T.; Smirnov, P.; Soloviev, Y.; South, D.; Spaskov, V.; Specka, A.; Steder, M.; Stella, B.; Stiewe, J.; Stoilov, A.; Straumann, U.; Sunar, D.; Tchoulakov, V.; Thompson, G.; Thompson, P. D.; Toll, T.; Tomasz, F.; Traynor, D.; Truöl, P.; Tsakov, I.; Tsipolitis, G.; Tsurin, I.; Turnau, J.; Tzamariudaki, E.; Urban, K.; Urban, M.; Usik, A.; Utkin, D.; Valkárová, A.; Vallée, C.; van Mechelen, P.; Vargas Trevino, A.; Vazdik, Y.; Veelken, C.; Vinokurova, S.; Volchinski, V.; Wacker, K.; Weber, G.; Weber, R.; Wegener, D.; Werner, C.; Wessels, M.; Wessling, B.; Wissing, C.; Wolf, R.; Wünsch, E.; Xella, S.; Yan, W.; Yeganov, V.; Žáček, J.; Zálešák, J.; Zhang, Z.; Zhelezov, A.; Zhokin, A.; Zhu, Y. C.; Zimmermann, J.; Zimmermann, T.; Zohrabyan, H.; Zomer, F.

2006-12-01

The production of tau leptons in ep collisions is investigated using data recorded by the H1 detector at HERA in the period 1994 2000. Tau leptons are identified by detecting their decay products, using leptonic and hadronic decay modes. The cross section for the production of tau lepton pairs is measured for the first time at HERA. Furthermore, a search for events with an energetic isolated tau lepton and with large missing transverse momentum is performed. The results are found to be in agreement with the Standard Model predictions.

Latest results from HERA

Indian Academy of Sciences (India)

Standard Model where particles that have quantum numbers of both leptons and quarks are produced. Then a search ..... The limits from HERA can be seen to be very competitive with limits from other colliders especially for low values ... the decay t —bW. A similar decay chain is possible for the production of a single stop in.

Duplex unwinding and ATPase activities of the DEAD-box helicase eIF4A are coupled by eIF4G and eIF4B

Science.gov (United States)

Özeş, Ali R.; Feoktistova, Kateryna; Avanzino, Brian C.; Fraser, Christopher S.

2011-01-01

Eukaryotic initiation factor 4A (eIF4A) is a DEAD-box helicase that stimulates translation initiation by unwinding mRNA secondary structure. The accessory proteins, eIF4G, eIF4B, and eIF4H enhance the duplex unwinding activity of eIF4A, but the extent to which they modulate eIF4A activity is poorly understood. Here, we use real time fluorescence assays to determine the kinetic parameters of duplex unwinding and ATP hydrolysis by these initiation factors. To ensure efficient duplex unwinding, eIF4B and eIF4G cooperatively activate the duplex unwinding activity of eIF4A. Our data reveal that eIF4H is much less efficient at stimulating eIF4A unwinding activity than eIF4B, implying that eIF4H is not able to completely substitute for eIF4B in duplex unwinding. By monitoring unwinding and ATPase assays using identical conditions, we demonstrate that eIF4B couples the ATP hydrolysis cycle of eIF4A with strand separation, thereby minimizing non-productive unwinding events. Using duplex substrates with altered GC contents, but with similar predicted thermal stabilities, we further show that the rate of formation of productive unwinding complexes is strongly influenced by the local stability per base pair in addition to the stability of the entire duplex. This finding explains how a change in the GC content of a hairpin while maintaining overall predicted thermal stability is able to influence translation initiation. PMID:21840318

Test of internal halo targets in the HERA proton ring

International Nuclear Information System (INIS)

Hast, C.; Hofmann, W.; Khan, S.; Knoepfle, K.T.; Reber, M.; Rieling, J.; Spahn, M.; Spengler, J.; Lohse, T.; Pugatch, V.

1994-07-01

Internal wire targets in the halo of stored proton beams provide a line source of proton-nucleus interactions for highest-rate fixed target experiments. We have studied such internal halo targets at the 820 GeV proton ring of the HERA ep collider. The tests showed that most of the protons in the beam halo - which would otherwise hit the collimators - can be brought to interaction in a relatively thin target wire at distances of 7 to 8 beam widths from the center of the beam. At less than 10% of the HERA total design current, and less than 20% of the current per bunch, interaction rates up to 8 MHz were observed, corresponding to more than 2 interactions per bunch crossing. The halo targets were used in parallel to the HERA luminosity operation; no significant disturbances of the HERA ep experiments, of the machine stability or beam quality were observed. We present data on the steady-state and transient behaviour of interaction rates and discuss the interpretation in terms of a simple beam dynamics model. Issues of short-, medium- and long-term rate fluctuations and of rate stabilization by feedback are addressed. (orig.)

Test of internal halo targets in the HERA proton ring

International Nuclear Information System (INIS)

Hast, C.; Hofmann, W.; Khan, S.; Knoepfle, K.T.; Reber, M.; Rieling, J.; Spahn, M.; Spengler, J.; Lohse, T.; Pugatch, V.

1995-01-01

Internal wire targets in the halo of stored proton beams provide a line source of proton-nucleus interactions for highest-rate fixed target experiments. We have studied such internal halo targets at the 820 GeV proton ring of the HERA ep collider. The tests showed that most of the protons in the beam halo - which would otherwise hit the collimators - can be brought to interaction in a relatively thin target wire at distances of 7 to 8 beam widths from the center of the beam. At less than 10% of the HERA total design current, and less than 20% of the current per bunch, interaction rates up to 8 MHz were observed, corresponding to more than 2 interactions per bunch crossing. The halo targets were used in parallel to the HERA luminosity operation; no significant disturbances of the HERA ep experiments, of the machine stability or beam quality were observed. We present data on the steady-state and transient behaviour of interaction rates and discuss the interpretation in terms of a simple beam dynamics model. Issues of short-, medium- and long-term rate fluctuations and of rate stabilization by feedback are addressed. ((orig.))

ARCPHdb: A comprehensive protein database for SF1 and SF2 helicase from archaea.

Science.gov (United States)

Moukhtar, Mirna; Chaar, Wafi; Abdel-Razzak, Ziad; Khalil, Mohamad; Taha, Samir; Chamieh, Hala

2017-01-01

Superfamily 1 and Superfamily 2 helicases, two of the largest helicase protein families, play vital roles in many biological processes including replication, transcription and translation. Study of helicase proteins in the model microorganisms of archaea have largely contributed to the understanding of their function, architecture and assembly. Based on a large phylogenomics approach, we have identified and classified all SF1 and SF2 protein families in ninety five sequenced archaea genomes. Here we developed an online webserver linked to a specialized protein database named ARCPHdb to provide access for SF1 and SF2 helicase families from archaea. ARCPHdb was implemented using MySQL relational database. Web interfaces were developed using Netbeans. Data were stored according to UniProt accession numbers, NCBI Ref Seq ID, PDB IDs and Entrez Databases. A user-friendly interactive web interface has been developed to browse, search and download archaeal helicase protein sequences, their available 3D structure models, and related documentation available in the literature provided by ARCPHdb. The database provides direct links to matching external databases. The ARCPHdb is the first online database to compile all protein information on SF1 and SF2 helicase from archaea in one platform. This database provides essential resource information for all researchers interested in the field. Copyright © 2016 Elsevier Ltd. All rights reserved.

Formation of a Trimeric Xpo1-Ran[GTP]-Ded1 Exportin Complex Modulates ATPase and Helicase Activities of Ded1.

Directory of Open Access Journals (Sweden)

Glenn Hauk

Full Text Available The DEAD-box RNA helicase Ded1, which is essential in yeast and known as DDX3 in humans, shuttles between the nucleus and cytoplasm and takes part in several basic processes including RNA processing and translation. A key interacting partner of Ded1 is the exportin Xpo1, which together with the GTP-bound state of the small GTPase Ran, facilitates unidirectional transport of Ded1 out of the nucleus. Here we demonstrate that Xpo1 and Ran[GTP] together reduce the RNA-stimulated ATPase and helicase activities of Ded1. Binding and inhibition of Ded1 by Xpo1 depend on the affinity of the Ded1 nuclear export sequence (NES for Xpo1 and the presence of Ran[GTP]. Association with Xpo1/Ran[GTP] reduces RNA-stimulated ATPase activity of Ded1 by increasing the apparent KM for the RNA substrate. Despite the increased KM, the Ded1:Xpo1:Ran[GTP] ternary complex retains the ability to bind single stranded RNA, suggesting that Xpo1/Ran[GTP] may modulate the substrate specificity of Ded1. These results demonstrate that, in addition to transport, exportins such as Xpo1 also have the capability to alter enzymatic activities of their cargo.

Targeting Dengue Virus NS-3 Helicase by Ligand based Pharmacophore Modeling and Structure based Virtual Screening

Science.gov (United States)

Halim, Sobia A.; Khan, Shanza; Khan, Ajmal; Wadood, Abdul; Mabood, Fazal; Hussain, Javid; Al-Harrasi, Ahmed

2017-10-01

Dengue fever is an emerging public health concern, with several million viral infections occur annually, for which no effective therapy currently exist. Non-structural protein 3 (NS-3) Helicase encoded by the dengue virus (DENV) is considered as a potential drug target to design new and effective drugs against dengue. Helicase is involved in unwinding of dengue RNA. This study was conducted to design new NS-3 Helicase inhibitor by in silico ligand- and structure based approaches. Initially ligand-based pharmacophore model was generated that was used to screen a set of 1201474 compounds collected from ZINC Database. The compounds matched with the pharmacophore model were docked into the active site of NS-3 helicase. Based on docking scores and binding interactions, twenty five compounds are suggested to be potential inhibitors of NS3 Helicase. The pharmacokinetic properties of these hits were predicted. The selected hits revealed acceptable ADMET properties. This study identified potential inhibitors of NS-3 Helicase in silico, and can be helpful in the treatment of Dengue.

EM structure of a helicase-loader complex depicting a 6:2 binding sub-stoichiometry from Geobacillus kaustophilus HTA426

International Nuclear Information System (INIS)

Lin, Yen-Chen; Naveen, Vankadari; Hsiao, Chwan-Deng

2016-01-01

During DNA replication, bacterial helicase is recruited as a complex in association with loader proteins to unwind the parental duplex. Previous structural studies have reported saturated 6:6 helicase-loader complexes with different conformations. However, structural information on the sub-stoichiometric conformations of these previously-documented helicase-loader complexes remains elusive. Here, with the aid of single particle electron-microscopy (EM) image reconstruction, we present the Geobacillus kaustophilus HTA426 helicase-loader (DnaC-DnaI) complex with a 6:2 binding stoichiometry in the presence of ATPγS. In the 19 Å resolution EM map, the undistorted and unopened helicase ring holds a robust loader density above the C-terminal RecA-like domain. Meanwhile, the path of the central DNA binding channel appears to be obstructed by the reconstructed loader density, implying its potential role as a checkpoint conformation to prevent the loading of immature complex onto DNA. Our data also reveals that the bound nucleotides and the consequently induced conformational changes in the helicase hexamer are essential for active association with loader proteins. These observations provide fundamental insights into the formation of the helicase-loader complex in bacteria that regulates the DNA replication process. - Highlights: • Helicase-loader complex structure with 6:2 sub-stoichiometry is resolved by EM. • Helicase hexamer in 6:2 sub-stoichiometry is constricted and un-opened. • 6:2 binding ratio of helicase-loader complex could act as a DNA loading checkpoint. • Nucleotides stabilize helicase-loader complex at low protein concentrations.

EM structure of a helicase-loader complex depicting a 6:2 binding sub-stoichiometry from Geobacillus kaustophilus HTA426

Energy Technology Data Exchange (ETDEWEB)

Lin, Yen-Chen [Institute of Molecular Biology, Academia Sinica, Taipei 115, Taiwan (China); Naveen, Vankadari [Institute of Molecular Biology, Academia Sinica, Taipei 115, Taiwan (China); Molecular Cell Biology, Taiwan International Graduate Program, Institute of Molecular Biology, Academia Sinica, and Graduate Institute of Life Sciences, National Defense Medical Center, Taipei, Taiwan (China); Hsiao, Chwan-Deng, E-mail: hsiao@gate.sinica.edu.tw [Institute of Molecular Biology, Academia Sinica, Taipei 115, Taiwan (China); Molecular Cell Biology, Taiwan International Graduate Program, Institute of Molecular Biology, Academia Sinica, and Graduate Institute of Life Sciences, National Defense Medical Center, Taipei, Taiwan (China)

2016-04-22

During DNA replication, bacterial helicase is recruited as a complex in association with loader proteins to unwind the parental duplex. Previous structural studies have reported saturated 6:6 helicase-loader complexes with different conformations. However, structural information on the sub-stoichiometric conformations of these previously-documented helicase-loader complexes remains elusive. Here, with the aid of single particle electron-microscopy (EM) image reconstruction, we present the Geobacillus kaustophilus HTA426 helicase-loader (DnaC-DnaI) complex with a 6:2 binding stoichiometry in the presence of ATPγS. In the 19 Å resolution EM map, the undistorted and unopened helicase ring holds a robust loader density above the C-terminal RecA-like domain. Meanwhile, the path of the central DNA binding channel appears to be obstructed by the reconstructed loader density, implying its potential role as a checkpoint conformation to prevent the loading of immature complex onto DNA. Our data also reveals that the bound nucleotides and the consequently induced conformational changes in the helicase hexamer are essential for active association with loader proteins. These observations provide fundamental insights into the formation of the helicase-loader complex in bacteria that regulates the DNA replication process. - Highlights: • Helicase-loader complex structure with 6:2 sub-stoichiometry is resolved by EM. • Helicase hexamer in 6:2 sub-stoichiometry is constricted and un-opened. • 6:2 binding ratio of helicase-loader complex could act as a DNA loading checkpoint. • Nucleotides stabilize helicase-loader complex at low protein concentrations.

J/ψ-production mechanisms and determination of the gluon density at HERA

International Nuclear Information System (INIS)

Jung, H.; Schuler, G.A.; Terron, J.

1992-02-01

We discuss photo- and leptoproduction of J/ψ-mesons at energies ranging from fixed-target experiments up to HERA. Elastic and diffractive production as well as various inelastic processes are studied. We investigate the range in which J/ψ-production is described by photon-gluon fusion in the colour-singlet model. We show how inelastic J/ψ production at HERA can be used to extract the gluon density. We estimate an accessible range of 3 x 10 -4 < x < 0.1 and discuss sources of errors in the reconstruction of the gluon density at HERA. (orig.)

Demonstration of helicase activity in the nonstructural protein, NSs, of the negative-sense RNA virus, groundnut bud necrosis virus.

Science.gov (United States)

Bhushan, Lokesh; Abraham, Ambily; Choudhury, Nirupam Roy; Rana, Vipin Singh; Mukherjee, Sunil Kumar; Savithri, Handanahal Subbarao

2015-04-01

The nonstructural protein NSs, encoded by the S RNA of groundnut bud necrosis virus (GBNV) (genus Tospovirus, family Bunyaviridae) has earlier been shown to possess nucleic-acid-stimulated NTPase and 5' α phosphatase activity. ATP hydrolysis is an essential function of a true helicase. Therefore, NSs was tested for DNA helicase activity. The results demonstrated that GBNV NSs possesses bidirectional DNA helicase activity. An alanine mutation in the Walker A motif (K189A rNSs) decreased DNA helicase activity substantially, whereas a mutation in the Walker B motif resulted in a marginal decrease in this activity. The parallel loss of the helicase and ATPase activity in the K189A mutant confirms that NSs acts as a non-canonical DNA helicase. Furthermore, both the wild-type and K189A NSs could function as RNA silencing suppressors, demonstrating that the suppressor activity of NSs is independent of its helicase or ATPase activity. This is the first report of a true helicase from a negative-sense RNA virus.

High-throughput screening assay of hepatitis C virus helicase inhibitors using fluorescence-quenching phenomenon

International Nuclear Information System (INIS)

Tani, Hidenori; Akimitsu, Nobuyoshi; Fujita, Osamu; Matsuda, Yasuyoshi; Miyata, Ryo; Tsuneda, Satoshi; Igarashi, Masayuki; Sekiguchi, Yuji; Noda, Naohiro

2009-01-01

We have developed a novel high-throughput screening assay of hepatitis C virus (HCV) nonstructural protein 3 (NS3) helicase inhibitors using the fluorescence-quenching phenomenon via photoinduced electron transfer between fluorescent dyes and guanine bases. We prepared double-stranded DNA (dsDNA) with a 5'-fluorescent-dye (BODIPY FL)-labeled strand hybridized with a complementary strand, the 3'-end of which has guanine bases. When dsDNA is unwound by helicase, the dye emits fluorescence owing to its release from the guanine bases. Our results demonstrate that this assay is suitable for quantitative assay of HCV NS3 helicase activity and useful for high-throughput screening for inhibitors. Furthermore, we applied this assay to the screening for NS3 helicase inhibitors from cell extracts of microorganisms, and found several cell extracts containing potential inhibitors.

Charm production and QCD analysis at HERA and LHC

International Nuclear Information System (INIS)

Zenaiev, O.

2017-02-01

This review is devoted to the study of charm production in ep and pp collisions. The total set of measurements obtained by the two collaborations H1 and ZEUS from HERA and their combination is outlined, as well as complementary data obtained by the LHCb collaboration at the LHC. After fitting the parton distribution functions the charm production cross sections are predicted within perturbative QCD at next-to-leading order using the fixed-flavour-number scheme. Agreement with the data is found. The combined HERA charm data are sensitive to the c-quark mass and enabled its accurate determination. The predictions crucially depend upon the knowledge of the gluon distribution function. It is shown that the shape of the gluon distribution based on the HERA data is considerably improved by adding the measurements from LHCb and applicable down to values x of about 10"-"6, where x is the proton momentum fraction carried by a parton.

Charm production and QCD analysis at HERA and LHC

Energy Technology Data Exchange (ETDEWEB)

Zenaiev, O.

2017-02-15

This review is devoted to the study of charm production in ep and pp collisions. The total set of measurements obtained by the two collaborations H1 and ZEUS from HERA and their combination is outlined, as well as complementary data obtained by the LHCb collaboration at the LHC. After fitting the parton distribution functions the charm production cross sections are predicted within perturbative QCD at next-to-leading order using the fixed-flavour-number scheme. Agreement with the data is found. The combined HERA charm data are sensitive to the c-quark mass and enabled its accurate determination. The predictions crucially depend upon the knowledge of the gluon distribution function. It is shown that the shape of the gluon distribution based on the HERA data is considerably improved by adding the measurements from LHCb and applicable down to values x of about 10{sup -6}, where x is the proton momentum fraction carried by a parton.

Charm production and QCD analysis at HERA and LHC

Energy Technology Data Exchange (ETDEWEB)

Zenaiev, O. [DESY, Hamburg (Germany)

2017-03-15

This review is devoted to the study of charm production in ep and pp collisions. The total set of measurements obtained by the two collaborations H1 and ZEUS from HERA and their combination is outlined, as well as complementary data obtained by the LHCb Collaboration at the LHC. After fitting the parton distribution functions the charm-production cross sections are predicted within perturbative QCD at next-to-leading order using the fixed-flavour-number scheme. Agreement with the data is found. The combined HERA charm data are sensitive to the c-quark mass and enabled its accurate determination. The predictions crucially depend upon the knowledge of the gluon distribution function. It is shown that the shape of the gluon distribution based on the HERA data is considerably improved by adding the measurements from LHCb and applicable down to values x of about 10{sup -6}, where x is the proton momentum fraction carried by a parton. (orig.)

Emerging Importance of Helicases in Plant Stress Tolerance: Characterization of Oryza sativa Repair Helicase XPB2 Promoter and Its Functional Validation in Tobacco under Multiple Stresses

OpenAIRE

Raikwar, Shailendra; Srivastava, Vineet K.; Gill, Sarvajeet S.; Tuteja, Renu; Tuteja, Narendra

2015-01-01

Genetic material always remains at the risk of spontaneous or induced damage which challenges the normal functioning of DNA molecule, thus, DNA repair is vital to protect the organisms against genetic damage. Helicases, the unique molecular motors, are emerged as prospective molecules to engineer stress tolerance in plants and are involved in nucleic acid metabolism including DNA repair. The repair helicase, XPB is an evolutionary conserved protein present in different organisms, including pl...

A mechanical mechanism for translocation of ring-shaped helicases on DNA and its demonstration in a macroscopic simulation system

Science.gov (United States)

Chou, Y. C.

2018-04-01

The asymmetry in the two-layered ring structure of helicases and the random thermal fluctuations of the helicase and DNA molecules are considered as the bases for the generation of the force required for translocation of the ring-shaped helicase on DNA. The helicase comprises a channel at its center with two unequal ends, through which strands of DNA can pass. The random collisions between the portion of the DNA strand in the central channel and the wall of the channel generate an impulsive force toward the small end. This impulsive force is the starting point for the helicase to translocate along the DNA with the small end in front. Such a physical mechanism may serve as a complementary for the chemomechanical mechanism of the translocation of helicase on DNA. When the helicase arrives at the junction of ssDNA and dsDNA (a fork), the collision between the helicase and the closest base pair may produce a sufficient impulsive force to break the weak hydrogen bond of the base pair. Thus, the helicase may advance and repeat the process of unwinding the dsDNA strand. This mechanism was tested in a macroscopic simulation system where the helicase was simulated using a truncated-cone structure and DNA was simulated with bead chains. Many features of translocation and unwinding such as translocation on ssDNA and dsDNA, unwinding of dsDNA, rewinding, strand switching, and Holliday junction resolution were reproduced.

Emerging importance of helicases in plant stress tolerance: characterization of Oryza sativa repair helicase XPB2 promoter and its functional validation in tobacco under multiple stresses

OpenAIRE

Shailendra eRaikwar; Vineet Kumar Shrivastava; Sarvajeet Singh Gill; Renu eTuteja; Narendra eTuteja; Narendra eTuteja

2015-01-01

Genetic material always remains at the risk of spontaneous or induced damage which challenges the normal functioning of DNA molecule, thus, DNA repair is vital to protect the organisms against genetic damage. DNA hHelicases, the unique molecular motors, are emerged as potentialprospective molecules to engineer stress tolerance in plants and are involved in a variety of DNA nucleic acid metabolismc processes including DNA repair. The DNA repair helicase, OsXPB2 is an evolutionary conserved pr...

Measurement of the proton structure function at HERA using the ZEUS detector

International Nuclear Information System (INIS)

Bentvelsen, S.C.M.

1994-01-01

In May 1992, the HERA collider produced its first collisions between electrons and protons, at a center-of-mass energy of 295 GeV. The ZEUS experiment, one of the two main detectors at HERA, recorded 24.7 nb -1 of data in the fall of 1992. The analysis of this data, leading to an initial determination of the proton structure function F 2 in the kinematic domain accessible at HERA, is the main subject of this thesis. In the first chapter, a short review of inclusive deep-inelastic-scattering (DIS) is given. We also briefly present the status of pre-HERA fixed target DIS experiments. The second chapter offers a description of the HERA accelerator complex, the luminosity measurement and the ZEUS detector. Chapter three treats the reconstruction of x ans Q 2 from measured quantities. Chapter four describes the selection of the DIS data sample. Chapter five investigates various distributions of the DIS sample in comparison with the Monte Carlo predictions. The Monte Carlo distributions are given for extreme choices of the proton structure function parametrizations. In chapter six, we determine from the x and Q 2 distributions the proton structure function F 2 . A correction is made for the effect of the longitudinal structure function F L . The measured F 2 as a function of x is rising rapidly towards low values of x. (orig.)

Electron ring design for HERA, including spin-matching

International Nuclear Information System (INIS)

Skuja, A.; Hand, L.; Steffen, K.; Barber, D.

1984-01-01

A. Skuja has been working in collaboration with Professor Lou Hand in obtaining an optics for the electron ring at HERA that satisfies the usual constraints of an electron storage ring, but in addition allows longitudinal polarization in the interaction region without depolarizing the electron beam completely. This collaboration effort grew out of their work on a possible electron ring at Fermilab. When this project was degraded in priority at Fermilab, they turned their attention to the HERA project at DESY. The HERA project will have an electron ring of about 30 GeV e - (or e + ) incident on 800 GeV protons. Recently it has been decided that the collisions should be head on (0 0 crossing), although all previous designs had a crossing angle of the 2 beams of 20 mrad. Professors Hand and Skuja implemented a complete program in the last year and a half that could fit the usual Turis parameters as well as the so called 12 spin-matching conditions of Chao and Yukoya for all possible machine elements including solenoids. The program has the possibility of fully coupling vertical and horizontal motion using the usual eigenvalue method

Hera: High Energy Astronomical Data Analysis via the Internet

Science.gov (United States)

Valencic, Lynne A.; Chai, P.; Pence, W.; Snowden, S.

2011-09-01

The HEASARC at NASA Goddard Space Flight Center has developed Hera, a data processing facility for analyzing high energy astronomical data over the internet. Hera provides all the software packages, disk space, and computing resources needed to do general processing of and advanced research on publicly available data from High Energy Astrophysics missions. The data and data products are kept on a server at GSFC and can be downloaded to a user's local machine. This service is provided for free to students, educators, and researchers for educational and research purposes.

Binding of DEAD-box helicase Dhh1 to the 5'-untranslated region of ASH1 mRNA represses localized translation of ASH1 in yeast cells.

Science.gov (United States)

Zhang, Qianjun; Meng, Xiuhua; Li, Delin; Chen, Shaoyin; Luo, Jianmin; Zhu, Linjie; Singer, Robert H; Gu, Wei

2017-06-09

Local translation of specific mRNAs is regulated by dynamic changes in their subcellular localization, and these changes are due to complex mechanisms controlling cytoplasmic mRNA transport. The budding yeast Saccharomyces cerevisiae is well suited to studying these mechanisms because many of its transcripts are transported from the mother cell to the budding daughter cell. Here, we investigated the translational control of ASH1 mRNA after transport and localization. We show that although ASH1 transcripts were translated after they reached the bud tip, some mRNAs were bound by the RNA-binding protein Puf6 and were non-polysomal. We also found that the DEAD-box helicase Dhh1 complexed with the untranslated ASH1 mRNA and Puf6. Loss of Dhh1 affected local translation of ASH1 mRNA and resulted in delocalization of ASH1 transcript in the bud. Forcibly shifting the non-polysomal ASH1 mRNA into polysomes was associated with Dhh1 dissociation. We further demonstrated that Dhh1 is not recruited to ASH1 mRNA co-transcriptionally, suggesting that it could bind to ASH1 mRNA within the cytoplasm. Of note, Dhh1 bound to the 5'-UTR of ASH1 mRNA and inhibited its translation in vitro These results suggest that after localization to the bud tip, a portion of the localized ASH1 mRNA becomes translationally inactive because of binding of Dhh1 and Puf6 to the 5'- and 3'-UTRs of ASH1 mRNA. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

Superconducting cavities for HERA

International Nuclear Information System (INIS)

Dwersteg, B.; Ebeling, W.; Moeller, W.D.; Renken, D.; Proch, D.; Sekutowicz, J.; Susta, J.; Tong, D.

1988-01-01

Superconducting 500 MHz cavities are developed to demonstrate the feasibility of upgrading the e-beam energy of the HERA storage ring. A prototype module with 2 x 4 cell resonators and appropriate fundamental and higher mode couplers has been designed at DESY and is being built by industrial firms. The design and results of RF and cryogenic measurements are reported in detail. 17 references, 10 figures, 2 tables

HERA's welcome

International Nuclear Information System (INIS)

Anon.

1984-01-01

The final approval of the big HERA electron-proton collider project was officially announced by Federal German Minister of Research and Technology Heinz Riesenhuber in a ceremony at the German DESY Laboratory on 6 April. In a memorable speech in the crowded experimental hall of the DORIS storage ring. Minister Riesenhuber pointed out the importance of basic research for our future and the absolute priority of freedom for science

Enzymatic activities and DNA substrate specificity of Mycobacterium tuberculosis DNA helicase XPB.

Science.gov (United States)

Balasingham, Seetha V; Zegeye, Ephrem Debebe; Homberset, Håvard; Rossi, Marie L; Laerdahl, Jon K; Bohr, Vilhelm A; Tønjum, Tone

2012-01-01

XPB, also known as ERCC3 and RAD25, is a 3' → 5' DNA repair helicase belonging to the superfamily 2 of helicases. XPB is an essential core subunit of the eukaryotic basal transcription factor complex TFIIH. It has two well-established functions: in the context of damaged DNA, XPB facilitates nucleotide excision repair by unwinding double stranded DNA (dsDNA) surrounding a DNA lesion; while in the context of actively transcribing genes, XPB facilitates initiation of RNA polymerase II transcription at gene promoters. Human and other eukaryotic XPB homologs are relatively well characterized compared to conserved homologs found in mycobacteria and archaea. However, more insight into the function of bacterial helicases is central to understanding the mechanism of DNA metabolism and pathogenesis in general. Here, we characterized Mycobacterium tuberculosis XPB (Mtb XPB), a 3'→5' DNA helicase with DNA-dependent ATPase activity. Mtb XPB efficiently catalyzed DNA unwinding in the presence of significant excess of enzyme. The unwinding activity was fueled by ATP or dATP in the presence of Mg(2+)/Mn(2+). Consistent with the 3'→5' polarity of this bacterial XPB helicase, the enzyme required a DNA substrate with a 3' overhang of 15 nucleotides or more. Although Mtb XPB efficiently unwound DNA model substrates with a 3' DNA tail, it was not active on substrates containing a 3' RNA tail. We also found that Mtb XPB efficiently catalyzed ATP-independent annealing of complementary DNA strands. These observations significantly enhance our understanding of the biological roles of Mtb XPB.

Enzymatic activities and DNA substrate specificity of Mycobacterium tuberculosis DNA helicase XPB.

Directory of Open Access Journals (Sweden)

Seetha V Balasingham

Full Text Available XPB, also known as ERCC3 and RAD25, is a 3' → 5' DNA repair helicase belonging to the superfamily 2 of helicases. XPB is an essential core subunit of the eukaryotic basal transcription factor complex TFIIH. It has two well-established functions: in the context of damaged DNA, XPB facilitates nucleotide excision repair by unwinding double stranded DNA (dsDNA surrounding a DNA lesion; while in the context of actively transcribing genes, XPB facilitates initiation of RNA polymerase II transcription at gene promoters. Human and other eukaryotic XPB homologs are relatively well characterized compared to conserved homologs found in mycobacteria and archaea. However, more insight into the function of bacterial helicases is central to understanding the mechanism of DNA metabolism and pathogenesis in general. Here, we characterized Mycobacterium tuberculosis XPB (Mtb XPB, a 3'→5' DNA helicase with DNA-dependent ATPase activity. Mtb XPB efficiently catalyzed DNA unwinding in the presence of significant excess of enzyme. The unwinding activity was fueled by ATP or dATP in the presence of Mg(2+/Mn(2+. Consistent with the 3'→5' polarity of this bacterial XPB helicase, the enzyme required a DNA substrate with a 3' overhang of 15 nucleotides or more. Although Mtb XPB efficiently unwound DNA model substrates with a 3' DNA tail, it was not active on substrates containing a 3' RNA tail. We also found that Mtb XPB efficiently catalyzed ATP-independent annealing of complementary DNA strands. These observations significantly enhance our understanding of the biological roles of Mtb XPB.

ATPase activity measurement of DNA replicative helicase from Bacillus stearothermophilus by malachite green method.

Science.gov (United States)

Yang, Mu; Wang, Ganggang

2016-09-15

The DnaB helicase from Bacillus stearothermophilus (DnaBBst) was a model protein for studying the bacterial DNA replication. In this work, a non-radioactive method for measuring ATPase activity of DnaBBst helicase was described. The working parameters and conditions were optimized. Furthermore, this method was applied to investigate effects of DnaG primase, ssDNA and helicase loader protein (DnaI) on ATPase activity of DnaBBst. Our results showed this method was sensitive and efficient. Moreover, it is suitable for the investigation of functional interaction between DnaB and related factors. Copyright © 2016 Elsevier Inc. All rights reserved.

New aspects of the structure of the proton revealed by the collider Hera; Nouveaux aspects de la structure du proton avec le collisionneur HERA

Energy Technology Data Exchange (ETDEWEB)

Zhang, Z

2000-12-01

Since its commissioning in 1991, the ep collider HERA has been running successfully for almost a decade without stopping improving its performance. In this report, the inclusive cross section and structure function measurements for the deep inelastic scattering of neutral and charged current processes in the full HERA kinematic domain are reviewed. The results are compared with the Standard Model expectations for the deep inelastic scattering processes. The new insights into the proton structure and on the underlying strong and electroweak interactions are discussed. (author)

Helicase properties of the Escherichia coli UvrAb protein complex

International Nuclear Information System (INIS)

Oh, E.Y.; Grossman, L.

1987-01-01

The Escherichia coli UvrA protein has an associated ATPase activity with a turnover number affected by the presence of UvrB protein as well as by DNA. Specifically, the structure of DNA significantly influences the turnover rate of the UvrAB ATPase activity. Double-stranded DNA maximally activates the turnover rate 10-fold whereas single-stranded DNA maximally activates the turnover rate 20-fold, suggesting that the mode of interaction of UvrAB protein with different DNAs is distinctive. We have previously shown that the UvrAB protein complex, driven by the binding energy of ATP, can locally unwind supercoiled DNA. The nature of the DNA unwinding activity and single-stranded DNA activation of ATPase activity suggest potential helicase activity. In the presence of a number of helicase substrates, the UvrAB complex, indeed, manifests a strand-displacement activity-unwinding short duplexes and D-loop DNA, thereby generating component DNA structures. The energy for the activity is derived from ATP or dATP hydrolysis. Unlike the E. coli DnaB, the UvrAB helicase is sensitive to UV-induced photoproducts

In TFIIH, XPD helicase is exclusively devoted to DNA repair.

Directory of Open Access Journals (Sweden)

Jochen Kuper

2014-09-01

Full Text Available The eukaryotic XPD helicase is an essential subunit of TFIIH involved in both transcription and nucleotide excision repair (NER. Mutations in human XPD are associated with several inherited diseases such as xeroderma pigmentosum, Cockayne syndrome, and trichothiodystrophy. We performed a comparative analysis of XPD from Homo sapiens and Chaetomium thermophilum (a closely related thermostable fungal orthologue to decipher the different molecular prerequisites necessary for either transcription or DNA repair. In vitro and in vivo assays demonstrate that mutations in the 4Fe4S cluster domain of XPD abrogate the NER function of TFIIH and do not affect its transcriptional activity. We show that the p44-dependent activation of XPD is promoted by the stimulation of its ATPase activity. Furthermore, we clearly demonstrate that XPD requires DNA binding, ATPase, and helicase activity to function in NER. In contrast, these enzymatic properties are dispensable for transcription initiation. XPD helicase is thus exclusively devoted to NER and merely acts as a structural scaffold to maintain TFIIH integrity during transcription.

Calibration of the mirror system in the HERA-B RICH

OpenAIRE

Starič, Marko; Križan, Peter

2007-01-01

The mirror system of the HERA-B RICH consists of two spherical and two planar mirrors, composed of altogether 116 mirror segments. Analysis of displacements of the \\v{C}erenkov ring center relative to the charged particle track, for given spherical-planar segment pairs, leads to accurate information regarding the orientation of individual mirror segments. The method is described and the effect of applying the required corrections on the \\v{C}erenkov angle resolution of the HERA-B RICH is disc...

Search for first-generation leptoquarks at HERA

CERN Document Server

Abramowicz, H.; Adamczyk, L.; Adamus, M.; Aggarwal, R.; Antonelli, S.; Antonioli, P.; Antonov, A.; Arneodo, M.; Arslan, O.; Aushev, V.; Aushev, Y.; Bachynska, O.; Bamberger, A.; Barakbaev, A.N.; Barbagli, G.; Bari, G.; Barreiro, F.; Bartosik, N.; Bartsch, D.; Basile, M.; Behnke, O.; Behr, J.; Behrens, U.; Bellagamba, L.; Bertolin, A.; Bhadra, S.; Bindi, M.; Blohm, C.; Bokhonov, V.; Bold, T.; Bondarenko, K.; Boos, E.G.; Borras, K.; Boscherini, D.; Bot, D.; Brock, I.; Brownson, E.; Brugnera, R.; Brummer, N.; Bruni, A.; Bruni, G.; Brzozowska, B.; Bussey, P.J.; Bylsma, B.; Caldwell, A.; Capua, M.; Carlin, R.; Catterall, C.D.; Chekanov, S.; Chwastowski, J.; Ciborowski, J.; Ciesielski, R.; Cifarelli, L.; Cindolo, F.; Contin, A.; Cooper-Sarkar, A.M.; Coppola, N.; Corradi, M.; Corriveau, F.; Costa, M.; D'Agostini, G.; Dal Corso, F.; del Peso, J.; Dementiev, R.K.; De Pasquale, S.; Derrick, M.; Devenish, R.C.E.; Dobur, D.; Dolinska, G.; Doyle, A.T.; Drugakov, V.; Durkin, L.S.; Dusini, S.; Eisenberg, Y.; Fang, S.; Fazio, S.; Ferrando, J.; Ferrero, M.I.; Figiel, J.; Forrest, M.; Foster, B.; Gach, G.; Galas, A.; Gallo, E.; Garfagnini, A.; Geiser, A.; Gialas, I.; Gizhko, A.; Gladilin, L.K.; Gladkov, D.; Glasman, C.; Gogota, O.; Golubkov, Yu.A.; Gottlicher, P.; Grabowska-Bold, I.; Grebenyuk, J.; Gregor, I.; Grigorescu, G.; Grzelak, G.; Gueta, O.; Guzik, M.; Gwenlan, C.; Haas, T.; Hain, W.; Hamatsu, R.; Hart, J.C.; Hartmann, H.; Hartner, G.; Hilger, E.; Hochman, D.; Hori, R.; Horton, K.; Huttmann, A.; Ibrahim, Z.A.; Iga, Y.; Ingbir, R.; Ishitsuka, M.; Jakob, H.P.; Januschek, F.; Jones, T.W.; Jungst, M.; Kadenko, I.; Kahle, B.; Kananov, S.; Kanno, T.; Karshon, U.; Karstens, F.; Katkov, I.I.; Kaur, M.; Kaur, P.; Keramidas, A.; Khein, L.A.; Kim, J.Y.; Kisielewska, D.; Kitamura, S.; Klanner, R.; Klein, U.; Koffeman, E.; Kondrashova, N.; Kononenko, O.; Kooijman, P.; Korol, Ie.; Korzhavina, I.A.; Kotanski, A.; Kotz, U.; Kowalski, H.; Kuprash, O.; Kuze, M.; Lee, A.; Levchenko, B.B.; Levy, A.; Libov, V.; Limentani, S.; Ling, T.Y.; Lisovyi, M.; Lobodzinska, E.; Lohmann, W.; Lohr, B.; Lohrmann, E.; Long, K.R.; Longhin, A.; Lontkovskyi, D.; Lukina, O.Yu.; Maeda, J.; Magill, S.; Makarenko, I.; Malka, J.; Mankel, R.; Margotti, A.; Marini, G.; Martin, J.F.; Mastroberardino, A.; Mattingly, M.C.K.; Melzer-Pellmann, I.A.; Mergelmeyer, S.; Miglioranzi, S.; Idris, F.Mohamad; Monaco, V.; Montanari, A.; Morris, J.D.; Mujkic, K.; Musgrave, B.; Nagano, K.; Namsoo, T.; Nania, R.; Nigro, A.; Ning, Y.; Nobe, T.; Notz, D.; Nowak, R.J.; Nuncio-Quiroz, A.E.; Oh, B.Y.; Okazaki, N.; Oliver, K.; Olkiewicz, K.; Onishchuk, Yu.; Papageorgiu, K.; Parenti, A.; Paul, E.; Pawlak, J.M.; Pawlik, B.; Pelfer, P.G.; Pellegrino, A.; Perlanski, W.; Perrey, H.; Piotrzkowski, K.; Plucinski, P.; Pokrovskiy, N.S.; Polini, A.; Proskuryakov, A.S.; Przybycien, M.; Raval, A.; Reeder, D.D.; Reisert, B.; Ren, Z.; Repond, J.; Ri, Y.D.; Robertson, A.; Roloff, P.; Rubinsky, I.; Ruspa, M.; Sacchi, R.; Samson, U.; Sartorelli, G.; Savin, A.A.; Saxon, D.H.; Schioppa, M.; Schlenstedt, S.; Schleper, P.; Schmidke, W.B.; Schneekloth, U.; Schonberg, V.; Schorner-Sadenius, T.; Schwartz, J.; Sciulli, F.; Shcheglova, L.M.; Shehzadi, R.; Shimizu, S.; Singh, I.; Skillicorn, I.O.; Slominski, W.; Smith, W.H.; Sola, V.; Solano, A.; Son, D.; Sosnovtsev, V.; Spiridonov, A.; Stadie, H.; Stanco, L.; Stefaniuk, N.; Stern, A.; Stewart, T.P.; Stifutkin, A.; Stopa, P.; Suchkov, S.; Susinno, G.; Suszycki, L.; Sztuk-Dambietz, J.; Szuba, D.; Szuba, J.; Tapper, A.D.; Tassi, E.; Terron, J.; Theedt, T.; Tiecke, H.; Tokushuku, K.; Tomaszewska, J.; Trusov, V.; Tsurugai, T.; Turcato, M.; Turkot, O.; Tymieniecka, T.; Vazquez, M.; Verbytskyi, A.; Viazlo, O.; Vlasov, N.N.; Walczak, R.; Wan Abdullah, W.A.T.; Whitmore, J.J.; Wichmann, K.; Wiggers, L.; Wing, M.; Wlasenko, M.; Wolf, G.; Wolfe, H.; Wrona, K.; Yagues-Molina, A.G.; Yamada, S.; Yamazaki, Y.; Yoshida, R.; Youngman, C.; Zabiegalov, O.; Zarnecki, A.F.; Zawiejski, L.; Zenaiev, O.; Zeuner, W.; Zhautykov, B.O.; Zhmak, N.; Zhou, C.; Zichichi, A.; Zolkapli, Z.; Zotkin, D.S.

2012-01-01

A search for first-generation leptoquarks was performed in electron-proton and positron-proton collisions recorded with the ZEUS detector at HERA in 2003-2007 using an integrated luminosity of 366 pb^-1. Final states with an electron and jets or with missing transverse momentum and jets were analysed, searching for resonances or other deviations from the Standard Model predictions. No evidence for any leptoquark signal was found. The data were combined with data previously taken at HERA, resulting in a total integrated luminosity of 498 pb^-1. Limits on the Yukawa coupling, lambda, of leptoquarks were set as a function of the leptoquark mass for different leptoquark types within the Buchmueller-Rueckl-Wyler model. Leptoquarks with a coupling lambda=0.3 are excluded for masses up to 699 GeV.

Search for first-generation leptoquarks at HERA

Energy Technology Data Exchange (ETDEWEB)

Abramowicz, H. [Tel Aviv Univ. (Israel). School of Physics; Max Planck Institute for Physics, Munich (Germany); Abt, I. [Max Planck Institute for Physics, Munich (Germany); Adamczyk, L. [AGH-Univ. of Science and Technology, Krakow (PL). Faculty of Physics and Applied Computer Science] (and others)

2012-05-15

A search for first-generation leptoquarks was performed in electron-proton and positron-proton collisions recorded with the ZEUS detector at HERA in 2003-2007 using an integrated luminosity of 366 pb{sup -}1. Final states with an electron and jets or with missing transverse momentum and jets were analysed, searching for resonances or other deviations from the Standard Model predictions. No evidence for any leptoquark signal was found. The data were combined with data previously taken at HERA, resulting in a total integrated luminosity of 498 pb{sup -}1. Limits on the Yukawa coupling, {lambda}, of leptoquarks were set as a function of the leptoquark mass for different leptoquark types within the Buchmueller-Rueckl-Wyler model. Leptoquarks with a coupling {lambda}=0.3 are excluded for masses up to 699 GeV.

Human errors during the simulations of an SGTR scenario: Application of the HERA system

International Nuclear Information System (INIS)

Jung, Won Dea; Whaley, April M.; Hallbert, Bruce P.

2009-01-01

Due to the need of data for a Human Reliability Analysis (HRA), a number of data collection efforts have been undertaken in several different organizations. As a part of this effort, a human error analysis that focused on a set of simulator records on a Steam Generator Tube Rupture (SGTR) scenario was performed by using the Human Event Repository and Analysis (HERA) system. This paper summarizes the process and results of the HERA analysis, including discussions about the usability of the HERA system for a human error analysis of simulator data. Five simulated records of an SGTR scenario were analyzed with the HERA analysis process in order to scrutinize the causes and mechanisms of the human related events. From this study, the authors confirmed that the HERA was a serviceable system that can analyze human performance qualitatively from simulator data. It was possible to identify the human related events in the simulator data that affected the system safety not only negatively but also positively. It was also possible to scrutinize the Performance Shaping Factors (PSFs) and the relevant contributory factors with regard to each identified human event

Differential distributions for heavy flavour production at HERA

CERN Document Server

Frixione, Stefano; Ridolfi, G C

1995-01-01

We compute pseudorapidity and transverse momentum distributions for charm and bottom production at HERA. We examine the effect of next-to-leading order QCD corrections, the effect of possible intrinsic transverse momenta of the incoming partons, and of fragmentation. We compare our results with full Monte Carlo simulation using HERWIG. The importance of the hadronic component of the photon is also studied. We examine the possibility to distinguish among different parametrizations of the photon parton densities using charm production data, and the possibilty to extract information about the small-x behaviour of the gluon density of the proton. We also give a prediction for the transverse momentum and pseudorapidity distributions for bottom production at HERA.

Differential distributions for heavy flavour production at HERA

International Nuclear Information System (INIS)

Frixione, S.; Ridolfi, G.

1995-01-01

We compute pseudorapidity and transverse momentum distributions for charm and bottom production at HERA. We examine the effect of next-to-leading order QCD corrections, the effect of possible intrinsic transverse momenta of the incoming partons, and of fragmentation. We compare our results with those of a full Monte Carlo simulation using HERWIG. The importance of the hadronic component of the photon is also studied. We examine the possibility of distinguishing between different parametrizations of the photon parton densities using charm production data, and the possibility of extracting information about the small-x behaviour of the gluon density of the proton. We also give a prediction for the transverse momentum and pseudorapidity distributions for bottom production at HERA. (orig.)

MOV10 RNA helicase is a potent inhibitor of retrotransposition in cells.

Directory of Open Access Journals (Sweden)

John L Goodier

Full Text Available MOV10 protein, a putative RNA helicase and component of the RNA-induced silencing complex (RISC, inhibits retrovirus replication. We show that MOV10 also severely restricts human LINE1 (L1, Alu, and SVA retrotransposons. MOV10 associates with the L1 ribonucleoprotein particle, along with other RNA helicases including DDX5, DHX9, DDX17, DDX21, and DDX39A. However, unlike MOV10, these other helicases do not strongly inhibit retrotransposition, an activity dependent upon intact helicase domains. MOV10 association with retrotransposons is further supported by its colocalization with L1 ORF1 protein in stress granules, by cytoplasmic structures associated with RNA silencing, and by the ability of MOV10 to reduce endogenous and ectopic L1 expression. The majority of the human genome is repetitive DNA, most of which is the detritus of millions of years of accumulated retrotransposition. Retrotransposons remain active mutagens, and their insertion can disrupt gene function. Therefore, the host has evolved defense mechanisms to protect against retrotransposition, an arsenal we are only beginning to understand. With homologs in other vertebrates, insects, and plants, MOV10 may represent an ancient and innate form of immunity against both infective viruses and endogenous retroelements.

Calibration of the mirror system in the HERA-B RICH

International Nuclear Information System (INIS)

Staric, Marko; Krizan, Peter

2008-01-01

The mirror system of the HERA-B ring imaging Cherenkov (RICH) counter consists of two spherical and two planar mirrors, composed of altogether 116 mirror segments. Analysis of displacements of the Cherenkov ring center relative to the charged particle track, for given spherical-planar segment pairs, leads to accurate information regarding the orientation of individual mirror segments. The method for mirror calibration is described and the effect of applying the required corrections on the Cherenkov angle resolution of the HERA-B RICH is discussed

PBDE: Structure-Activity Studies for the Inhibition of Hepatitis C Virus NS3 Helicase

Directory of Open Access Journals (Sweden)

Kazi Abdus Salam

2014-04-01

Full Text Available The helicase portion of the hepatitis C virus nonstructural protein 3 (NS3 is considered one of the most validated targets for developing direct acting antiviral agents. We isolated polybrominated diphenyl ether (PBDE 1 from a marine sponge as an NS3 helicase inhibitor. In this study, we evaluated the inhibitory effects of PBDE (1 on the essential activities of NS3 protein such as RNA helicase, ATPase, and RNA binding activities. The structure-activity relationship analysis of PBDE (1 against the HCV ATPase revealed that the biphenyl ring, bromine, and phenolic hydroxyl group on the benzene backbone might be a basic scaffold for the inhibitory potency.

Spin structure function measurements with polarized protons and electrons at HERA

International Nuclear Information System (INIS)

Ball, R.D.; Deshpande, A.; Forte, S.; Hughes, V.W.; Lichtenstadt, J.; Ridolfi, G.

1995-01-01

Useful insights into the spin structure functions of the nucleon can be achieved by measurements of spin-dependent asymmetries in inclusive scattering of high energy polarized electrons by high energy polarized protons at HERA. Such an experiment would be a natural extension of the polarized lepton-nucleon scattering experiments presently carried out at CERN and SLAC. We present here estimates of possible data in the extended kinematic range of HERA and associated statistical errors. (orig.)

Associated jet production at HERA

CERN Document Server

Bartels, Julius; de Roeck, A; Graudenz, Dirk; Wüsthoff, M

1996-01-01

We compare the BFKL prediction for the associated production of forward jets at HERA with fixed-order matrix element calculations taking into account the kinematical cuts imposed by experimental conditions. Comparison with H1 data of the 1993 run favours the BFKL prediction. As a further signal of BFKL dynamics, we propose to look for the azimuthal dependence of the forward jets.

Ebselen inhibits hepatitis C virus NS3 helicase binding to nucleic acid and prevents viral replication.

Science.gov (United States)

Mukherjee, Sourav; Weiner, Warren S; Schroeder, Chad E; Simpson, Denise S; Hanson, Alicia M; Sweeney, Noreena L; Marvin, Rachel K; Ndjomou, Jean; Kolli, Rajesh; Isailovic, Dragan; Schoenen, Frank J; Frick, David N

2014-10-17

The hepatitis C virus (HCV) nonstructural protein 3 (NS3) is both a protease, which cleaves viral and host proteins, and a helicase that separates nucleic acid strands, using ATP hydrolysis to fuel the reaction. Many antiviral drugs, and compounds in clinical trials, target the NS3 protease, but few helicase inhibitors that function as antivirals have been reported. This study focuses on the analysis of the mechanism by which ebselen (2-phenyl-1,2-benzisoselenazol-3-one), a compound previously shown to be a HCV antiviral agent, inhibits the NS3 helicase. Ebselen inhibited the abilities of NS3 to unwind nucleic acids, to bind nucleic acids, and to hydrolyze ATP, and about 1 μM ebselen was sufficient to inhibit each of these activities by 50%. However, ebselen had no effect on the activity of the NS3 protease, even at 100 times higher ebselen concentrations. At concentrations below 10 μM, the ability of ebselen to inhibit HCV helicase was reversible, but prolonged incubation of HCV helicase with higher ebselen concentrations led to irreversible inhibition and the formation of covalent adducts between ebselen and all 14 cysteines present in HCV helicase. Ebselen analogues with sulfur replacing the selenium were just as potent HCV helicase inhibitors as ebselen, but the length of the linker between the phenyl and benzisoselenazol rings was critical. Modifications of the phenyl ring also affected compound potency over 30-fold, and ebselen was a far more potent helicase inhibitor than other, structurally unrelated, thiol-modifying agents. Ebselen analogues were also more effective antiviral agents, and they were less toxic to hepatocytes than ebselen. Although the above structure-activity relationship studies suggest that ebselen targets a specific site on NS3, we were unable to confirm binding to either the NS3 ATP binding site or nucleic acid binding cleft by examining the effects of ebselen on NS3 proteins lacking key cysteines.

A Listeria monocytogenes RNA helicase essential for growth and ribosomal maturation at low temperatures uses its C terminus for appropriate interaction with the ribosome.

Science.gov (United States)

Netterling, Sakura; Vaitkevicius, Karolis; Nord, Stefan; Johansson, Jörgen

2012-08-01

Listeria monocytogenes, a Gram-positive food-borne human pathogen, is able to grow at temperatures close to 0°C and is thus of great concern for the food industry. In this work, we investigated the physiological role of one DExD-box RNA helicase in Listeria monocytogenes. The RNA helicase Lmo1722 was required for optimal growth at low temperatures, whereas it was dispensable at 37°C. A Δlmo1722 strain was less motile due to downregulation of the major subunit of the flagellum, FlaA, caused by decreased flaA expression. By ribosomal fractionation experiments, it was observed that Lmo1722 was mainly associated with the 50S subunit of the ribosome. Absence of Lmo1722 decreased the fraction of 50S ribosomal subunits and mature 70S ribosomes and affected the processing of the 23S precursor rRNA. The ribosomal profile could be restored to wild-type levels in a Δlmo1722 strain expressing Lmo1722. Interestingly, the C-terminal part of Lmo1722 was redundant for low-temperature growth, motility, 23S rRNA processing, and appropriate ribosomal maturation. However, Lmo1722 lacking the C terminus showed a reduced affinity for the 50S and 70S fractions, suggesting that the C terminus is important for proper guidance of Lmo1722 to the 50S subunit. Taken together, our results show that the Listeria RNA helicase Lmo1722 is essential for growth at low temperatures, motility, and rRNA processing and is important for ribosomal maturation, being associated mainly with the 50S subunit of the ribosome.

Parton distributions with the combined HERA charm production cross sections

International Nuclear Information System (INIS)

Bertone, Valerio; Rojo, Juan

2013-01-01

Heavy quark structure functions from HERA provide a direct handle on the medium and small-x gluon PDF. In this contribution, we discuss ongoing progress on the implementation of the FONLL General-Mass scheme with running heavy quark masses, and of its benchmarking with the HOPPET and OpenQCDrad codes, and then present the impact of the recently released combined HERA charm production cross sections in the NNPDF 2.3 analysis. We find that the combined charm data contribute to constraining the gluon and quarks at small values of Bjorken-x.

Parton distributions with the combined HERA charm production cross sections

Energy Technology Data Exchange (ETDEWEB)

Bertone, Valerio [Physikalisches Institut, Albert-Ludwigs-Universitaet Freiburg, Hermann-Herder-Strasse 3, D-79104 Freiburg i. B (Germany); Rojo, Juan [PH Department, TH Unit, CERN, CH-1211 Geneva 23 (Switzerland)

2013-04-15

Heavy quark structure functions from HERA provide a direct handle on the medium and small-x gluon PDF. In this contribution, we discuss ongoing progress on the implementation of the FONLL General-Mass scheme with running heavy quark masses, and of its benchmarking with the HOPPET and OpenQCDrad codes, and then present the impact of the recently released combined HERA charm production cross sections in the NNPDF 2.3 analysis. We find that the combined charm data contribute to constraining the gluon and quarks at small values of Bjorken-x.

Heavy Quark Production at HERA in KT Factorization Supplemented With CCFM Evolution

International Nuclear Information System (INIS)

Jung, H.

2001-01-01

The application of k t - factorization, supplemented with the CCFM small-x evolution equation, to heavy quark production is discussed. Differential cross sections of bb production and also inelastic J/ψ production as measured at HERA are compared to the hadron level CCFM Monte Carlo generator Cascade, using the unintegrated gluon density obtained within the CCFM evolution approach from a fit to HERA F 2 data. (author)

Cryogenic system for the HERA magnet measurement facility

International Nuclear Information System (INIS)

Barton, H.R. Jr.; Clausen, M.; Kebler, G.

1986-01-01

This paper describes the design for a helium, cryogenic distribution system that allows independent operation and testing of superconducting magnets of the HERA project before they are installed in the 6-km ring tunnel. The 820-GeV proton storage ring of HERA will contain approximately 650 magnets having superconducting coils which are clamped by aluminum/stainless-steel collars and surrounded by a yoke of magnetic iron at liquid helium temperature. When the magnets arive at DESY from the manufacture, each magnet will be individually tested at helium operating conditions in the magnet measurement facility to insure the quality of the magnetic characteristics and the cryogenic performance. The capabilities of the cryogenic system and the schedule for magnet testing are discussed

Selectron and squark production in ep collisions at HERA

International Nuclear Information System (INIS)

Bartels, J.; Hollik, W.

1988-01-01

For the SUSY Standard Model we give a detailed discussion how HERA can be used for disentangling the mixing structure in the neutralino sector. We present 3-dimensional plots for the total cross section and for the polarization asymmetry for selectron-squark production, varying both the sfermion masses and a mixing parameter. The main results are: (I) production rates at HERA are reasonably large for a wide range of mixing parameters; (II) the polarization asymmetry depends only weakly upon the sfermion masses and thus is a very useful tool in determining mixing parameters or mass splittings between left and right handed selectron masses. (orig.)

DESY: HERA moves on

International Nuclear Information System (INIS)

Anon.

1993-01-01

First encouraging physics results from the new HERA electron-proton collider at DESY, Hamburg, reported last year (October, page 6), came from the machine operating at less than 1% of its design luminosity (a measure of the proton-electron collision rate). In the short time available to the machine specialists, several substantial improvements have been made, and the HERA operating crew is confident of substantially improved performance when operations get underway again in April. The 820 GeV superconducting proton storage ring is behaving as expected. The number of stored bunches has been increased from 10 to 160 (the maximum is 210). Without any optimization the current reached 13 mA, nearly 10% of the design level, and the beam lifetime is generally longer than 50 hours. The protons can thus be kept in the machine over several successive electron fills. The long proton beam lifetime attests to the excellent vacuum in the beam pipe (much of it at liquid helium temperature) and to minimal beam losses. In the electron ring, 100 bunches were stored in the most recent tests (initially only ten bunches could be handled) and the multibunch feedback system brought into action. The 23 mA current represented about 40% of the design figure. The energy is usually kept around 27 GeV, but could be increased to 30 GeV if required

Photoproduction of jets at HERA

International Nuclear Information System (INIS)

Chyla, J.

1993-01-01

The intimate relation between the direct and resolved photon interactions, due to the factorization mechanism, is elucidated. It is argued that recent data from HERA do not provide a direct evidence for the latter component, but should rather be interpreted as a manifestation of the O(α s 2 ) term in γp and, via the Weizsaecker-Williams approximation, in ep interactions. 5 figs., 12 refs

SUSY signals at DESY HERA in the no-scale flipped SU(5) supergravity model

Energy Technology Data Exchange (ETDEWEB)

Lopez, J.L.; Nanopoulos, D.V.; Wang, X.; Zichichi, A. (Center for Theoretical Physics, Department of Physics, Texas A M University, College Station, Texas 77843-4242 (United States) Astroparticle Physics Group, Houston Advanced Research Center (HARC), The Woodlands, Texas 77381 (United States) CERN, Geneva (Switzerland))

1993-11-01

Sparticle production and detection at DESY HERA are studied within the recently proposed no-scale flipped SU(5) supergravity model. Among the various reaction channels that could lead to sparticle production at HERA, only the following are within its limit of sensitivity in this model: [ital e][sup [minus

Measurement of elastic φ photoproduction at HERA

International Nuclear Information System (INIS)

Derrick, M.; Krakauer, D.; Magill, S.

1996-01-01

The production of φ mesons in the reaction e + p→e + φp(φ→K + K - ) at a median Q 2 of 10 -4 GeV 2 has been studied with the ZEUS detector at HERA. The differential φ photoproduction cross section dσ/dt has an exponential shape and has been determined in the kinematic range 0.1 2 and 60 γp→φp 0.96±0.19 -0.18 +0.21 μb has been obtained by extrapolating to t=0. When compared to lower energy data, the results show a weak energy dependence of both σ γp→φp and the slope of the t distribution. The φ decay angular distributions are consistent with s-channel helicity conservation. From lower energies to HERA energies, the features of φ photoproduction are compatible with those of a soft diffractive process. (orig.)

The helicase domain of Polθ counteracts RPA to promote alt-NHEJ.

Science.gov (United States)

Mateos-Gomez, Pedro A; Kent, Tatiana; Deng, Sarah K; McDevitt, Shane; Kashkina, Ekaterina; Hoang, Trung M; Pomerantz, Richard T; Sfeir, Agnel

2017-12-01

Mammalian polymerase theta (Polθ) is a multifunctional enzyme that promotes error-prone DNA repair by alternative nonhomologous end joining (alt-NHEJ). Here we present structure-function analyses that reveal that, in addition to the polymerase domain, Polθ-helicase activity plays a central role during double-strand break (DSB) repair. Our results show that the helicase domain promotes chromosomal translocations by alt-NHEJ in mouse embryonic stem cells and also suppresses CRISPR-Cas9- mediated gene targeting by homologous recombination (HR). In vitro assays demonstrate that Polθ-helicase activity facilitates the removal of RPA from resected DSBs to allow their annealing and subsequent joining by alt-NHEJ. Consistent with an antagonistic role for RPA during alt-NHEJ, inhibition of RPA1 enhances end joining and suppresses recombination. Taken together, our results reveal that the balance between HR and alt-NHEJ is controlled by opposing activities of Polθ and RPA, providing further insight into the regulation of repair-pathway choice in mammalian cells.

High PT leptons and single W boson production at HERA

International Nuclear Information System (INIS)

Korcsak-Gorzo, Katherine

2010-12-01

A search for isolated electrons and muons with high transverse momentum in events with large missing transverse momentum has been conducted. The results have been found to be compatible with the Standard Model expectations. The cross section for single W production has been measured and the total cross section in electron-proton collisions at HERA has been found to be σ(ep → eWX) = 0.93 -0.23 +0.26 (stat.)±0.08(syst.) pb. The measurements are based on the complete available ZEUS data sets from the HERA I and II running periods taken between 1994-2007. (orig.)

Crystal structure of the FeS cluster-containing nucleotide excision repair helicase XPD.

Directory of Open Access Journals (Sweden)

Stefanie C Wolski

2008-06-01

Full Text Available DNA damage recognition by the nucleotide excision repair pathway requires an initial step identifying helical distortions in the DNA and a proofreading step verifying the presence of a lesion. This proofreading step is accomplished in eukaryotes by the TFIIH complex. The critical damage recognition component of TFIIH is the XPD protein, a DNA helicase that unwinds DNA and identifies the damage. Here, we describe the crystal structure of an archaeal XPD protein with high sequence identity to the human XPD protein that reveals how the structural helicase framework is combined with additional elements for strand separation and DNA scanning. Two RecA-like helicase domains are complemented by a 4Fe4S cluster domain, which has been implicated in damage recognition, and an alpha-helical domain. The first helicase domain together with the helical and 4Fe4S-cluster-containing domains form a central hole with a diameter sufficient in size to allow passage of a single stranded DNA. Based on our results, we suggest a model of how DNA is bound to the XPD protein, and can rationalize several of the mutations in the human XPD gene that lead to one of three severe diseases, xeroderma pigmentosum, Cockayne syndrome, and trichothiodystrophy.

Transverse momentum of gluons in ep-scattering at HERA

International Nuclear Information System (INIS)

Cholewa, A.

2005-11-01

A Monte Carlo analysis of the phase space of hard interacting gluons in ep-scattering is presented. The event generator CASCADE is used in combination with the program HZTOOL to identify the accessible regions of phase space of present HERA measurements. A map of the k t -x g -plane is presented to show that in the region -3≤log g ≤-1 transverse gluon momenta of up to k t >or sim 20 GeV are accessible to HERA measurements. Furthermore the observables x γ and the transverse jet energy E T are found to be highly sensitive to the transverse momentum and the longitudinal momentum fraction of gluons. (orig.) (orig.)

HERA and the LHC: A Workshop on the implications of HERA for LHC physics: Proceedings Part A

CERN Document Server

De Roeck, A.; Startup Meeting; Working Group Meeting; Mid-term Review Meeting; Working Group Meeting; Working Group Meeting; Final Meeting

2005-01-01

The HERA electron--proton collider has collected 100 pb$^{-1}$ of data since its start-up in 1992, and recently moved into a high-luminosity operation mode, with upgraded detectors, aiming to increase the total integrated luminosity per experiment to more than 500 pb$^{-1}$. HERA has been a machine of excellence for the study of QCD and the structure of the proton. The Large Hadron Collider (LHC), which will collide protons with a centre-of-mass energy of 14 TeV, will be completed at CERN in 2007. The main mission of the LHC is to discover and study the mechanisms of electroweak symmetry breaking, possibly via the discovery of the Higgs particle, and search for new physics in the TeV energy scale, such as supersymmetry or extra dimensions. Besides these goals, the LHC will also make a substantial number of precision measurements and will offer a new regime to study the strong force via perturbative QCD processes and diffraction. For the full LHC physics programme a good understanding of QCD phenomena and the ...

Photon structure as seen at HERA

International Nuclear Information System (INIS)

Butterworth, J.M.

1995-03-01

At HERA, the electron-proton collider at DESY, Hamburg, the large flux of almost on-shell photons accompanying the lepton beam is being used to shed new light on the structure of the photon. Recent results are reviewed and discussed, with emphasis on those aspects of the photon's nature which should be understandable using perturbative QCD. (orig.)

Photon structure as seen at HERA

International Nuclear Information System (INIS)

Butterworth, J.M.

1995-01-01

At HERA, the lepton-proton collider at DESY, Hamburg, the large flux of almost on-shell photons accompanying the lepton beam is being used to shed new light on the structure of the photon. Recent results are reviewed and discussed, with emphasis on those aspects of the photon's nature which should be understandable using perturbative QCD. (author)

DNA binding and unwinding by Hel308 helicase requires dual functions of a winged helix domain.

Science.gov (United States)

Northall, Sarah J; Buckley, Ryan; Jones, Nathan; Penedo, J Carlos; Soultanas, Panos; Bolt, Edward L

2017-09-01

Hel308 helicases promote genome stability linked to DNA replication in archaea, and have homologues in metazoans. In the crystal structure of archaeal Hel308 bound to a tailed DNA duplex, core helicase domains encircle single-stranded DNA (ssDNA) in a "ratchet" for directional translocation. A winged helix domain (WHD) is also present, but its function is mysterious. We investigated the WHD in full-length Hel308, identifying that mutations in a solvent exposed α-helix resulted in reduced DNA binding and unwinding activities. When isolated from the rest of Hel308, the WHD protein alone bound to duplex DNA but not ssDNA, and DNA binding by WHD protein was abolished by the same mutations as were analyzed in full-length Hel308. Isolated WHD from a human Hel308 homologue (HelQ) also bound to duplex DNA. By disrupting the interface between the Hel308 WHD and a RecA-like domain, a topology typical of Ski2 helicases, we show that this is crucial for ATPase and helicase activities. The data suggest a model in which the WHD promotes activity of Hel308 directly, through binding to duplex DNA that is distinct from ssDNA binding by core helicase, and indirectly through interaction with the RecA-like domain. We propose how the WHD may contribute to ssDNA translocation, resulting in DNA helicase activity or in removal of other DNA bound proteins by "reeling" ssDNA. Copyright © 2017 Elsevier B.V. All rights reserved.

DNA unwinding by ring-shaped T4 helicase gp41 is hindered by tension on the occluded strand.

Science.gov (United States)

Ribeck, Noah; Saleh, Omar A

2013-01-01

The replicative helicase for bacteriophage T4 is gp41, which is a ring-shaped hexameric motor protein that achieves unwinding of dsDNA by translocating along one strand of ssDNA while forcing the opposite strand to the outside of the ring. While much study has been dedicated to the mechanism of binding and translocation along the ssDNA strand encircled by ring-shaped helicases, relatively little is known about the nature of the interaction with the opposite, 'occluded' strand. Here, we investigate the interplay between the bacteriophage T4 helicase gp41 and the ss/dsDNA fork by measuring, at the single-molecule level, DNA unwinding events on stretched DNA tethers in multiple geometries. We find that gp41 activity is significantly dependent on the geometry and tension of the occluded strand, suggesting an interaction between gp41 and the occluded strand that stimulates the helicase. However, the geometry dependence of gp41 activity is the opposite of that found previously for the E. coli hexameric helicase DnaB. Namely, tension applied between the occluded strand and dsDNA stem inhibits unwinding activity by gp41, while tension pulling apart the two ssDNA tails does not hinder its activity. This implies a distinct variation in helicase-occluded strand interactions among superfamily IV helicases, and we propose a speculative model for this interaction that is consistent with both the data presented here on gp41 and the data that had been previously reported for DnaB.

Working Group I: Parton distributions: Summary report for the HERA LHC Workshop Proceedings

Energy Technology Data Exchange (ETDEWEB)

Dittmar, M.; /Zurich, ETH; Forte, S.; /Milan U. /INFN, Milan; Glazov, A.; /DESY; Moch, S.; /DESY, Zeuthen; Alekhin, S.; Altarelli, G.; Andersen, Jeppe R.; Ball, R.D.; Blumlein, J.; Bottcher, H.; Carli, T.; Ciafaloni, M.; Colferai, D.; Cooper-Sarkar, A.; Corcella, G.; Del Debbio, L.; Dissertori, G.; Feltesse, J.; Guffanti, A.; Gwenlan, C.; Huston, J.; /Zurich, ETH /DESY, Zeuthen /Serpukhov, IHEP /CERN /Rome III U. /INFN, Rome3 /Cambridge U. /Edinburgh U. /Florence U. /INFN, Florence /Oxford U. /DSM, DAPNIA, Saclay

2005-11-01

We provide an assessment of the impact of parton distributions on the determination of LHC processes, and of the accuracy with which parton distributions (PDFs) can be extracted from data, in particular from current and forthcoming HERA experiments. We give an overview of reference LHC processes and their associated PDF uncertainties, and study in detail W and Z production at the LHC.We discuss the precision which may be obtained from the analysis of existing HERA data, tests of consistency of HERA data from different experiments, and the combination of these data. We determine further improvements on PDFs which may be obtained from future HERA data (including measurements of F{sub L}), and from combining present and future HERA data with present and future hadron collider data. We review the current status of knowledge of higher (NNLO) QCD corrections to perturbative evolution and deep-inelastic scattering, and provide reference results for their impact on parton evolution, and we briefly examine non-perturbative models for parton distributions. We discuss the state-of-the art in global parton fits, we assess the impact on them of various kinds of data and of theoretical corrections, by providing benchmarks of Alekhin and MRST parton distributions and a CTEQ analysis of parton fit stability, and we briefly presents proposals for alternative approaches to parton fitting. We summarize the status of large and small x resummation, by providing estimates of the impact of large x resummation on parton fits, and a comparison of different approaches to small x resummation, for which we also discuss numerical techniques.

Structural mechanisms of human RecQ helicases WRN and BLM

Directory of Open Access Journals (Sweden)

Ken eKitano

2014-10-01

Full Text Available The RecQ family DNA helicases WRN (Werner syndrome protein and BLM (Bloom syndrome protein play a key role in protecting the genome against deleterious changes. In humans, mutations in these proteins lead to rare genetic diseases associated with cancer predisposition and accelerated aging. WRN and BLM are distinguished from other helicases by possessing signature tandem domains toward the C terminus, referred to as the RecQ C-terminal (RQC and helicase-and-ribonuclease D-C-terminal (HRDC domains. Although the precise function of the HRDC domain remains unclear, the previous crystal structure of a WRN RQC-DNA complex visualized a central role for the RQC domain in recognizing, binding and unwinding DNA at branch points. In particular, a prominent hairpin structure (the β-wing within the RQC winged-helix motif acts as a scalpel to induce the unpairing of a Watson-Crick base pair at the DNA duplex terminus. A similar RQC-DNA interaction was also observed in the recent crystal structure of a BLM-DNA complex. I review the latest structures of WRN and BLM, and then provide a docking simulation of BLM with a Holliday junction. The model offers an explanation for the efficient branch migration activity of the RecQ family toward recombination and repair intermediates.

What one can learn about QCD from nuclear beams at HERA?

International Nuclear Information System (INIS)

Strikman, M.

1996-01-01

Overview is given of the theoretical issues of the physics which can be addressed with nuclear beams circulating in HERA. It is shown that such experiments widen considerably the horizon for probing QCD compared to that from free nucleon targets. They would allow to study nonlinear QCD phenomena at small x, understand dynamics of nuclear shadowing, as well as the the origin of diffraction in deep inelastic scattering. Interplay between the physics to be studied at HERA and in AA collisions at RHIC and LHC is also discussed. (author)

The C-terminal domain of the Bloom syndrome DNA helicase is essential for genomic stability

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Noonan James P

2001-07-01

Full Text Available Abstract Background Bloom syndrome is a rare cancer-prone disorder in which the cells of affected persons have a high frequency of somatic mutation and genomic instability. Bloom syndrome cells have a distinctive high frequency of sister chromatid exchange and quadriradial formation. BLM, the protein altered in BS, is a member of the RecQ DNA helicase family, whose members share an average of 40% identity in the helicase domain and have divergent N-terminal and C-terminal flanking regions of variable lengths. The BLM DNA helicase has been shown to localize to the ND10 (nuclear domain 10 or PML (promyelocytic leukemia nuclear bodies, where it associates with TOPIIIα, and to the nucleolus. Results This report demonstrates that the N-terminal domain of BLM is responsible for localization of the protein to the nuclear bodies, while the C-terminal domain directs the protein to the nucleolus. Deletions of the N-terminal domain of BLM have little effect on sister chromatid exchange frequency and chromosome stability as compared to helicase and C-terminal mutations which can increase SCE frequency and chromosome abnormalities. Conclusion The helicase activity and the C-terminal domain of BLM are critical for maintaining genomic stability as measured by the sister chromatid exchange assay. The localization of BLM into the nucleolus by the C-terminal domain appears to be more important to genomic stability than localization in the nuclear bodies.

Leading Baryon Production at HERA

International Nuclear Information System (INIS)

Dodonov, V.; Schmitt, S.

2009-01-01

The production of highly energetic forward neutrons has been studied in deep-inelastic scattering. The data were taken with the H1 detector at HERA in the years 2006-2007 and correspond to an integrated luminosity of 117 pb -1 . Semi-inclusive cross sections have been measured in the kinematic region 4 2 2 , 0.7*10 -4 -1 and the fractional momentum of the neutron 0.3 L T and compared to the predictions of models of leading neutron production. Differential cross sections for dijet photoproduction and in association with a leading neutron have been measured in the reaction e + p → e + jet jet X n with the ZEUS detector at HERA using an integrated luminosity of 40pb -1 . The data are consistent with a simple pion exchange model. The ratio of the neutron-tagged and dijet cross sections show violations of factorization of the lepton and photon vertices which can be explained by kinematic effects constraining the phase space for neutron production. Normalised double-differential leading-neutron cross sections have been measured in dijet photoproduction for the first time. The distributions can be fully characterised by only two energy dependent parameters extracted from fits to the data. Absorption effects were studied by comparing the dijet photoproduction measurements and similar results in deep inelastic scattering. No clear effect, not related to kinematics, was observed. In a resolved-enriched dijet photoproduction sample, significantly fewer neutrons were seen than for direct. This depletion can also be accounted for by kinematic constraints. The semi-inclusive reaction e + p → e + X p was studied with the ZEUS detector at HERA using an integrated luminosity of 12.8 pb -1 . The final state proton, which was detected with the ZEUS leading proton spectrometer, carried a large fraction of the incoming proton energy, x L > 0.32, and its transverse momentum squared satisfied p T 2 2 ; the exchanged photon virtuality, Q 2 , was greater than 3 GeV 2 and the range of

Interplay of cis- and trans-regulatory mechanisms in the spliceosomal RNA helicase Brr2.

Science.gov (United States)

Absmeier, Eva; Becke, Christian; Wollenhaupt, Jan; Santos, Karine F; Wahl, Markus C

2017-01-02

RNA helicase Brr2 is implicated in multiple phases of pre-mRNA splicing and thus requires tight regulation. Brr2 can be auto-inhibited via a large N-terminal region folding back onto its helicase core and auto-activated by a catalytically inactive C-terminal helicase cassette. Furthermore, it can be regulated in trans by the Jab1 domain of the Prp8 protein, which can inhibit Brr2 by intermittently inserting a C-terminal tail in the enzyme's RNA-binding tunnel or activate the helicase after removal of this tail. Presently it is unclear, whether these regulatory mechanisms functionally interact and to which extent they are evolutionarily conserved. Here, we report crystal structures of Saccharomyces cerevisiae and Chaetomium thermophilum Brr2-Jab1 complexes, demonstrating that Jab1-based inhibition of Brr2 presumably takes effect in all eukaryotes but is implemented via organism-specific molecular contacts. Moreover, the structures show that Brr2 auto-inhibition can act in concert with Jab1-mediated inhibition, and suggest that the N-terminal region influences how the Jab1 C-terminal tail interacts at the RNA-binding tunnel. Systematic RNA binding and unwinding studies revealed that the N-terminal region and the Jab1 C-terminal tail specifically interfere with accommodation of double-stranded and single-stranded regions of an RNA substrate, respectively, mutually reinforcing each other. Additionally, such analyses show that regulation based on the N-terminal region requires the presence of the inactive C-terminal helicase cassette. Together, our results outline an intricate system of regulatory mechanisms, which control Brr2 activities during snRNP assembly and splicing.

DNA secondary structure of the released strand stimulates WRN helicase action on forked duplexes without coordinate action of WRN exonuclease

Energy Technology Data Exchange (ETDEWEB)

Ahn, Byungchan, E-mail: bbccahn@mail.ulsan.ac.kr [Department of Life Sciences, University of Ulsan, Ulsan (Korea, Republic of); Bohr, Vilhelm A. [Laboratory of Molecular Gerontology, Biomedical Research Center, National Institute on Aging, Baltimore, MD (United States)

2011-08-12

Highlights: {yields} In this study, we investigated the effect of a DNA secondary structure on the two WRN activities. {yields} We found that a DNA secondary structure of the displaced strand during unwinding stimulates WRN helicase without coordinate action of WRN exonuclease. {yields} These results imply that WRN helicase and exonuclease activities can act independently. -- Abstract: Werner syndrome (WS) is an autosomal recessive premature aging disorder characterized by aging-related phenotypes and genomic instability. WS is caused by mutations in a gene encoding a nuclear protein, Werner syndrome protein (WRN), a member of the RecQ helicase family, that interestingly possesses both helicase and exonuclease activities. Previous studies have shown that the two activities act in concert on a single substrate. We investigated the effect of a DNA secondary structure on the two WRN activities and found that a DNA secondary structure of the displaced strand during unwinding stimulates WRN helicase without coordinate action of WRN exonuclease. These results imply that WRN helicase and exonuclease activities can act independently, and we propose that the uncoordinated action may be relevant to the in vivo activity of WRN.

Probing Positron Gravitation at HERA

International Nuclear Information System (INIS)

Gharibyan, Vahagn

2015-07-01

An equality of particle and antiparticle gravitational interactions holds in general relativity and is supported by indirect observations. Here I develop a method based on high energy Compton scattering to measure the gravitational interaction of accelerated charged particles. Within that formalism the Compton spectra measured at HERA rule out the positron's anti-gravity and hint for a positron's 1.3(0.2)% weaker coupling to the gravitational field relative to an electron.

Probing Positron Gravitation at HERA

Energy Technology Data Exchange (ETDEWEB)

Gharibyan, Vahagn

2015-07-15

An equality of particle and antiparticle gravitational interactions holds in general relativity and is supported by indirect observations. Here I develop a method based on high energy Compton scattering to measure the gravitational interaction of accelerated charged particles. Within that formalism the Compton spectra measured at HERA rule out the positron's anti-gravity and hint for a positron's 1.3(0.2)% weaker coupling to the gravitational field relative to an electron.

Measurement of $ D^{*\\pm}$ production in deep inelastic scattering at HERA

CERN Document Server

Abramowicz, H.; Adamczyk, L.; Adamus, M.; Aggarwal, R.; Antonelli, S.; Antonioli, P.; Antonov, A.; Arneodo, M.; Arslan, O.; Aushev, V.; Bachynska, O.; Bamberger, A.; Barakbaev, A.N.; Barbagli, G.; Bari, G.; Barreiro, F.; Bartosik, N.; Bartsch, D.; Basile, M.; Behnke, O.; Behr, J.; Behrens, U.; Bellagamba, L.; Bertolin, A.; Bhadra, S.; Bindi, M.; Blohm, C.; Bokhonov, V.; Bold, T.; Boos, E.G.; Borras, K.; Boscherini, D.; Bot, D.; Brock, I.; Brownson, E.; Brugnera, R.; Brummer, N.; Bruni, A.; Bruni, G.; Brzozowska, B.; Bussey, P.J.; Bylsma, B.; Caldwell, A.; Capua, M.; Carlin, R.; Catterall, C.D.; Chekanov, S.; Chwastowski, J.; Ciborowski, J.; Ciesielski, R.; Cifarelli, L.; Cindolo, F.; Contin, A.; Cooper-Sarkar, A.M.; Coppola, N.; Corradi, M.; Corriveau, F.; Costa, M.; D'Agostini, G.; Dal Corso, F.; del Peso, J.; Dementiev, R.K.; De Pasquale, S.; Derrick, M.; Devenish, R.C.E.; Dobur, D.; Dolinska, G.; Doyle, A.T.; Drugakov, V.; Durkin, L.S.; Dusini, S.; Eisenberg, Y.; Fang, S.; Fazio, S.; Ferrando, J.; Ferrero, M.I.; Figiel, J.; Foster, B.; Gach, G.; Galas, A.; Gallo, E.; Garfagnini, A.; Geiser, A.; Gialas, I.; Gizhko, A.; Gladilin, L.K.; Gladkov, D.; Glasman, C.; Gogota, O.; Golubkov, Yu. A.; Gottlicher, P.; Grabowska-Bold, I.; Grebenyuk, J.; Gregor, I.; Grigorescu, G.; Grzelak, G.; Gueta, O.; Guzik, M.; Gwenlan, C.; Haas, T.; Hain, W.; Hamatsu, R.; Hart, J.C.; Hartmann, H.; Hartner, G.; Hilger, E.; Hochman, D.; Hori, R.; Huttmann, A.; Ibrahim, Z.A.; Iga, Y.; Ingbir, R.; Ishitsuka, M.; Iudin, A.; Jakob, H.P.; Januschek, F.; Jones, T.W.; Jungst, M.; Kadenko, I.; Kahle, B.; Kananov, S.; Kanno, T.; Karshon, U.; Karstens, F.; Katkov, I.I.; Kaur, M.; Kaur, P.; Keramidas, A.; Khein, L.A.; Kim, J.Y.; Kisielewska, D.; Kitamura, S.; Klanner, R.; Klein, U.; Koffeman, E.; Kondrashova, N.; Kononenko, O.; Kooijman, P.; Korol, Ie.; Korzhavina, I.A.; Kotanski, A.; Kotz, U.; Kovalchuk, N.; Kowalski, H.; Kuprash, O.; Kuze, M.; Lee, A.; Levchenko, B.B.; Levy, A.; Libov, V.; Limentani, S.; Ling, T.Y.; Lisovyi, M.; Lobodzinska, E.; Lohmann, W.; Lohr, B.; Lohrmann, E.; Long, K.R.; Longhin, A.; Lontkovskyi, D.; Lukina, O.Yu.; Maeda, J.; Magill, S.; Makarenko, I.; Malka, J.; Mankel, R.; Margotti, A.; Marini, G.; Martin, J.F.; Mastroberardino, A.; Mattingly, M.C.K.; Melzer-Pellmann, I.A.; Mergelmeyer, S.; Miglioranzi, S.; Idris, F.Mohamad; Monaco, V.; Montanari, A.; Morris, J.D.; Mujkic, K.; Musgrave, B.; Nagano, K.; Namsoo, T.; Nania, R.; Nigro, A.; Ning, Y.; Nobe, T.; Notz, D.; Nowak, R.J.; Nuncio-Quiroz, A.E.; Oh, B.Y.; Okazaki, N.; Olkiewicz, K.; Onishchuk, Yu.; Papageorgiu, K.; Parenti, A.; Paul, E.; Pawlak, J.M.; Pawlik, B.; Pelfer, P.G.; Pellegrino, A.; Perlanski, W.; Perrey, H.; Piotrzkowski, K.; Plucinski, P.; Pokrovskiy, N.S.; Polini, A.; Proskuryakov, A.S.; Przybycien, M.; Raval, A.; Reeder, D.D.; Reisert, B.; Ren, Z.; Repond, J.; Ri, Y.D.; Robertson, A.; Roloff, P.; Rubinsky, I.; Ruspa, M.; Sacchi, R.; Samson, U.; Sartorelli, G.; Savin, A.A.; Saxon, D.H.; Schioppa, M.; Schlenstedt, S.; Schleper, P.; Schmidke, W.B.; Schneekloth, U.; Schonberg, V.; Schorner-Sadenius, T.; Schwartz, J.; Sciulli, F.; Shcheglova, L.M.; Shehzadi, R.; Shimizu, S.; Singh, I.; Skillicorn, I.O.; Slominski, W.; Smith, W.H.; Sola, V.; Solano, A.; Son, D.; Sosnovtsev, V.; Spiridonov, A.; Stadie, H.; Stanco, L.; Stefaniuk, N.; Stern, A.; Stewart, T.P.; Stifutkin, A.; Stopa, P.; Suchkov, S.; Susinno, G.; Suszycki, L.; Sztuk-Dambietz, J.; Szuba, D.; Szuba, J.; Tapper, A.D.; Tassi, E.; Terron, J.; Theedt, T.; Tiecke, H.; Tokushuku, K.; Tomaszewska, J.; Trofymov, A.; Trusov, V.; Tsurugai, T.; Turcato, M.; Tymieniecka, T.; Vazquez, M.; Verbytskyi, A.; Viazlo, O.; Vlasov, N.N.; Walczak, R.; Wan Abdullah, W.A.T.; Whitmore, J.J.; Wichmann, K.; Wiggers, L.; Wing, M.; Wlasenko, M.; Wolf, G.; Wolfe, H.; Wrona, K.; Yagues-Molina, A.G.; Yamada, S.; Yamazaki, Y.; Yoshida, R.; Youngman, C.; Zakharchuk, N.; Zarnecki, A.F.; Zawiejski, L.; Zenaiev, O.; Zeuner, W.; Zhautykov, B.O.; Zhmak, N.; Zichichi, A.; Zolkapli, Z.; Zotkin, D.S.

2013-01-01

The production of $D^{*\\pm}$ mesons in deep inelastic $ep$ scattering has been measured for exchanged photon virtualities $ 5HERA. Differential cross sections have been measured and compared to next-to-leading-order QCD calculations. The cross-sections are used to extract the charm contribution to the proton structure functions, expressed in terms of the reduced charm cross section, $\\sigma_{\\rm red}^{c\\bar{c}}$. Theoretical calculations based on fits to inclusive HERA data are compared to the results.

FBH1 influences DNA replication fork stability and homologous recombination through ubiquitylation of RAD51

DEFF Research Database (Denmark)

Chu, Wai Kit; Payne, Miranda J; Beli, Petra

2015-01-01

Unscheduled homologous recombination (HR) can lead to genomic instability, which greatly increases the threat of neoplastic transformation in humans. The F-box DNA helicase 1 (FBH1) is a 3'-5' DNA helicase with a putative function as a negative regulator of HR. It is the only known DNA helicase t...

A holistic evolutionary and structural study of flaviviridae provides insights into the function and inhibition of HCV helicase

Directory of Open Access Journals (Sweden)

Dimitrios Vlachakis

2013-05-01

Full Text Available Viral RNA helicases are involved in duplex unwinding during the RNA replication of the virus. It is suggested that these helicases represent very promising antiviral targets. Viruses of the flaviviridae family are the causative agents of many common and devastating diseases, including hepatitis, yellow fever and dengue fever. As there is currently no available anti-Flaviviridae therapy, there is urgent need for the development of efficient anti-viral pharmaceutical strategies. Herein, we report the complete phylogenetic analysis across flaviviridae alongside a more in-depth evolutionary study that revealed a series of conserved and invariant amino acids that are predicted to be key to the function of the helicase. Structural molecular modelling analysis revealed the strategic significance of these residues based on their relative positioning on the 3D structures of the helicase enzymes, which may be used as pharmacological targets. We previously reported a novel series of highly potent HCV helicase inhibitors, and we now re-assess their antiviral potential using the 3D structural model of the invariant helicase residues. It was found that the most active compound of the series, compound C4, exhibited an IC50 in the submicromolar range, whereas its stereoisomer (compound C12 was completely inactive. Useful insights were obtained from molecular modelling and conformational search studies via molecular dynamics simulations. C12 tends to bend and lock in an almost “U” shape conformation, failing to establish vital interactions with the active site of HCV. On the contrary, C4 spends most of its conformational time in a straight, more rigid formation that allows it to successfully block the passage of the oligonucleotide in the ssRNA channel of the HCV helicase. This study paves the way and provides the necessary framework for the in-depth analysis required to enable the future design of new and potent anti-viral agents.

The Hera Saturn Entry Probe Mission: a Proposal in Response to the ESA M5 Call

Science.gov (United States)

Mousis, Olivier; Atkinson, David; Amato, Michael; Aslam, Shahid; Atreya, Sushil; Blanc, Michel; Bolton, Scott; Brugger, Bastien; Calcutt, Simon; Cavalié, Thibault; Charnoz, Sébastien; Coustenis, Athena; Deleuil, Magali; Dobrijevic, Michel; Ferri, Francesca; Fletcher, Leigh; Gautier, Daniel; Guillot, Tristan; Hartogh, Paul; Holland, Andrew

2017-04-01

The Hera Saturn entry probe mission is proposed as an ESA M-class mission to be piggybacked on a NASA spacecraft sent to or past the Saturn system. Hera consists of an atmospheric probe built by ESA and released into the atmosphere of Saturn by its NASA companion Saturn Carrier-Relay spacecraft. Hera will perform in situ measurements of the chemical and isotopic composition as well as the structure and dynamics of Saturn's atmosphere using a single probe, with the goal of improving our understanding of the origin, formation, and evolution of Saturn, the giant planets and their satellite systems, with extrapolation to extrasolar planets. Hera will probe well into and possibly beneath the cloud-forming region of the troposphere, below the region accessible to remote sensing, to locations where certain cosmogenically abundant species are expected to be well mixed. The Hera probe will be designed from ESA elements with possible contributions from NASA, and the Saturn/Carrier-Relay Spacecraft will be supplied by NASA through its selection via the New Frontier 2016 call or in the form of a flagship mission selected by the NASA "Roadmaps to Ocean Worlds" (ROW) program. The Hera probe will be powered by batteries, and we therefore anticipate only one major subsystems to be possibly supplied by the United States, either by direct procurement by ESA or by contribution from NASA: the thermal protection system of the probe. Following the highly successful example of the Cassini-Huygens mission, Hera will carry European and American instruments, with scientists and engineers from both agencies and many affiliates participating in all aspects of mission development and implementation. A Saturn probe is one of the six identified desired themes by the Planetary Science Decadal Survey committee on the NASA New Frontier's list, providing additional indication that a Saturn probe is of extremely high interest and a very high priority for the international community.

Single molecule measurements of DNA helicase activity with magnetic tweezers and t-test based step-finding analysis

Science.gov (United States)

Seol, Yeonee; Strub, Marie-Paule; Neuman, Keir C.

2016-01-01

Magnetic tweezers is a versatile and easy to implement single-molecule technique that has become increasingly prevalent in the study of nucleic acid based molecular motors. Here, we provide a description of the magnetic tweezers instrument and guidelines for measuring and analyzing DNA helicase activity. Along with experimental methods, we describe a robust method of single-molecule trajectory analysis based on the Student’s t-test that accommodates continuous transitions in addition to the discrete transitions assumed in most widely employed analysis routines. To illustrate the single-molecule unwinding assay and the analysis routine, we provide DNA unwinding measurements of Escherichia coli RecQ helicase under a variety of conditions (Na+, ATP, temperature, and DNA substrate geometry). These examples reveal that DNA unwinding measurements under various conditions can aid in elucidating the unwinding mechanism of DNA helicase but also emphasize that environmental effects on DNA helicase activity must be considered in relation to in vivo activity and mechanism. PMID:27131595

Interactive Roles of DNA Helicases and Translocases with the Single-Stranded DNA Binding Protein RPA in Nucleic Acid Metabolism.

Science.gov (United States)

Awate, Sanket; Brosh, Robert M

2017-06-08

Helicases and translocases use the energy of nucleoside triphosphate binding and hydrolysis to unwind/resolve structured nucleic acids or move along a single-stranded or double-stranded polynucleotide chain, respectively. These molecular motors facilitate a variety of transactions including replication, DNA repair, recombination, and transcription. A key partner of eukaryotic DNA helicases/translocases is the single-stranded DNA binding protein Replication Protein A (RPA). Biochemical, genetic, and cell biological assays have demonstrated that RPA interacts with these human molecular motors physically and functionally, and their association is enriched in cells undergoing replication stress. The roles of DNA helicases/translocases are orchestrated with RPA in pathways of nucleic acid metabolism. RPA stimulates helicase-catalyzed DNA unwinding, enlists translocases to sites of action, and modulates their activities in DNA repair, fork remodeling, checkpoint activation, and telomere maintenance. The dynamic interplay between DNA helicases/translocases and RPA is just beginning to be understood at the molecular and cellular levels, and there is still much to be learned, which may inform potential therapeutic strategies.

Human Enterovirus Nonstructural Protein 2CATPase Functions as Both an RNA Helicase and ATP-Independent RNA Chaperone

Science.gov (United States)

Xia, Hongjie; Wang, Peipei; Wang, Guang-Chuan; Yang, Jie; Sun, Xianlin; Wu, Wenzhe; Qiu, Yang; Shu, Ting; Zhao, Xiaolu; Yin, Lei; Qin, Cheng-Feng; Hu, Yuanyang; Zhou, Xi

2015-01-01

RNA helicases and chaperones are the two major classes of RNA remodeling proteins, which function to remodel RNA structures and/or RNA-protein interactions, and are required for all aspects of RNA metabolism. Although some virus-encoded RNA helicases/chaperones have been predicted or identified, their RNA remodeling activities in vitro and functions in the viral life cycle remain largely elusive. Enteroviruses are a large group of positive-stranded RNA viruses in the Picornaviridae family, which includes numerous important human pathogens. Herein, we report that the nonstructural protein 2CATPase of enterovirus 71 (EV71), which is the major causative pathogen of hand-foot-and-mouth disease and has been regarded as the most important neurotropic enterovirus after poliovirus eradication, functions not only as an RNA helicase that 3′-to-5′ unwinds RNA helices in an adenosine triphosphate (ATP)-dependent manner, but also as an RNA chaperone that destabilizes helices bidirectionally and facilitates strand annealing and complex RNA structure formation independently of ATP. We also determined that the helicase activity is based on the EV71 2CATPase middle domain, whereas the C-terminus is indispensable for its RNA chaperoning activity. By promoting RNA template recycling, 2CATPase facilitated EV71 RNA synthesis in vitro; when 2CATPase helicase activity was impaired, EV71 RNA replication and virion production were mostly abolished in cells, indicating that 2CATPase-mediated RNA remodeling plays a critical role in the enteroviral life cycle. Furthermore, the RNA helicase and chaperoning activities of 2CATPase are also conserved in coxsackie A virus 16 (CAV16), another important enterovirus. Altogether, our findings are the first to demonstrate the RNA helicase and chaperoning activities associated with enterovirus 2CATPase, and our study provides both in vitro and cellular evidence for their potential roles during viral RNA replication. These findings increase our

B-physics at HERA

International Nuclear Information System (INIS)

Gladilin, L.K.

2000-01-01

The beauty photoproduction cross-section measurements in ep collisions at HERA are reviewed. Data samples of events having a lepton (μ or e) and two jets in the final state, have been collected with the H1 and ZEUS detectors. The beauty signals have been extracted by fitting the p T rel distribution of the data with beauty, charm and light flavor components, where p T rel is the transverse momentum of the lepton relative to the axis of the associated jet. The obtained beauty cross sections are larger than leading order Monte Carlo and next-to-leading order perturbative QCD predictions

Measurement of hot spots inside the proton at HERA and LEP/LHC

International Nuclear Information System (INIS)

Bartels, J.

1991-12-01

In this paper we discuss the measurement of regions in the proton where the density of small-χ partons is large, called 'hot spots', by means of an associated jet analysis. An analytical estimate of the cross section is presented and the jet kinematics is discussed in the HERA and LEP-LHC frame. A Monte Carlo estimate shows that the number of jets produced in deep inelastic scattering events at HERA, suitable for this analysis, amounts to a few 1000 jets for a data sample with an integrated luminosity of about 10 pb -1 . (orig.)

DESY: HERA superconducting magnets OK; Theory workshop

International Nuclear Information System (INIS)

Anon.

1990-01-01

The HERA electron-proton collider being built at the DESY Laboratory in Hamburg is the first accelerator using superconducting magnets manufactured by industry on a large scale. For this pioneering step several potential problems now seem to be all well under control, with important contributions coming from both the manufacturers and DESY's accelerator specialists

The color class condensate RHIC and HERA

CERN Document Server

McLerran, L

2002-01-01

In this talk, I discuss a universal form of matter, the color glass condensate. It is this matter which composes the low x part of all hadronic wavefunctions. The experimental programs at RHIC and HERA, and future programs at LHC and RHIC may allow us to probe and study the properties of this matter. (8 refs).

Some topics in ep scattering at HERA. Pt. 2

International Nuclear Information System (INIS)

Abramowicz, H.; Krawczyk, M.; Maor, U.

1991-06-01

The theoretical and experimental situation related to the photon structure function is reviewed. The existing parton distributions of the resolved photon are disucssed in view of their need for the study of various processes at HERA. (orig.)

Measurement of D{sup *{+-}} production in deep inelastic scattering at HERA

Energy Technology Data Exchange (ETDEWEB)

Abramowicz, H. [Tel Aviv Univ. (Israel). School of Physics; Max Planck Institute for Physics, Munich (Germany); Abt, I. [Max Planck Institute for Physics, Munich (Germany); Adamczyk, L. [AGH-Univ. of Science and Technology, Krakow (Poland). Faculty of Physics and Applied Computer Science] [and others; Collaboration: ZEUS Collaboration

2013-03-15

The production of D{sup *{+-}} mesons in deep inelastic ep scattering has been measured for exchanged photon virtualities 5HERA. Differential cross sections have been measured and compared to next-to-leading-order QCD calculations. The cross-sections are used to extract the charm contribution to the proton structure functions, expressed in terms of the reduced charm cross section, {sigma}{sub red}{sup c} {sup anti} {sup c}. Theoretical calculations based on fits to inclusive HERA data are compared to the results.

Conserved helicase domain of human RecQ4 is required for strand annealing-independent DNA unwinding

DEFF Research Database (Denmark)

Rossi, Marie L; Ghosh, Avik K; Kulikowicz, Tomasz

2010-01-01

Humans have five members of the well conserved RecQ helicase family: RecQ1, Bloom syndrome protein (BLM), Werner syndrome protein (WRN), RecQ4, and RecQ5, which are all known for their roles in maintaining genome stability. BLM, WRN, and RecQ4 are associated with premature aging and cancer...... provide the first evidence that human RecQ4's unwinding is independent of strand annealing, and that it does not require the presence of excess ssDNA. Moreover, we demonstrate that a point mutation of the conserved lysine in the Walker A motif abolished helicase activity, implying that not the N...... activities and protein partners of RecQ4 are conserved with those of the other RecQ helicases....

Archaeal orthologs of Cdc45 and GINS form a stable complex that stimulates the helicase activity of MCM.

Science.gov (United States)

Xu, Yuli; Gristwood, Tamzin; Hodgson, Ben; Trinidad, Jonathan C; Albers, Sonja-Verena; Bell, Stephen D

2016-11-22

The regulated recruitment of Cdc45 and GINS is key to activating the eukaryotic MCM(2-7) replicative helicase. We demonstrate that the homohexameric archaeal MCM helicase associates with orthologs of GINS and Cdc45 in vivo and in vitro. Association of these factors with MCM robustly stimulates the MCM helicase activity. In contrast to the situation in eukaryotes, archaeal Cdc45 and GINS form an extremely stable complex before binding MCM. Further, the archaeal GINS•Cdc45 complex contains two copies of Cdc45. Our analyses give insight into the function and evolution of the conserved core of the archaeal/eukaryotic replisome.

The Helicase Activity of Hyperthermophilic Archaeal MCM is Enhanced at High Temperatures by Lysine Methylation.

Science.gov (United States)

Xia, Yisui; Niu, Yanling; Cui, Jiamin; Fu, Yang; Chen, Xiaojiang S; Lou, Huiqiang; Cao, Qinhong

2015-01-01

Lysine methylation and methyltransferases are widespread in the third domain of life, archaea. Nevertheless, the effects of methylation on archaeal proteins wait to be defined. Here, we report that recombinant sisMCM, an archaeal homolog of Mcm2-7 eukaryotic replicative helicase, is methylated by aKMT4 in vitro. Mono-methylation of these lysine residues occurs coincidently in the endogenous sisMCM protein purified from the hyperthermophilic Sulfolobus islandicus cells as indicated by mass spectra. The helicase activity of mini-chromosome maintenance (MCM) is stimulated by methylation, particularly at temperatures over 70°C. The methylated MCM shows optimal DNA unwinding activity after heat-treatment between 76 and 82°C, which correlates well with the typical growth temperatures of hyperthermophilic Sulfolobus. After methylation, the half life of MCM helicase is dramatically extended at 80°C. The methylated sites are located on the accessible protein surface, which might modulate the intra- and inter- molecular interactions through changing the hydrophobicity and surface charge. Furthermore, the methylation-mimic mutants of MCM show heat resistance helicase activity comparable to the methylated MCM. These data provide the biochemical evidence that posttranslational modifications such as methylation may enhance kinetic stability of proteins under the elevated growth temperatures of hyperthermophilic archaea.

Energy Flow and Leading Neutron Production at HERA

International Nuclear Information System (INIS)

Yan Wenbiao

2006-01-01

The azimuthal asymmetry of hadrons in the semi-inclusive process e+p → e+h+X is studied in deep inelastic scattering at HERA. A measurement of the dijet cross section with a leading neutron is also reported, the P T 2 distribution of the leading neutron is investigated

Staphylococcal SCCmec elements encode an active MCM-like helicase and thus may be replicative

Energy Technology Data Exchange (ETDEWEB)

Mir-Sanchis, Ignacio; Roman, Christina A.; Misiura, Agnieszka; Pigli, Ying Z.; Boyle-Vavra, Susan; Rice , Phoebe A. (UC)

2016-08-29

Methicillin-resistant Staphylococcus aureus (MRSA) is a public-health threat worldwide. Although the mobile genomic island responsible for this phenotype, staphylococcal cassette chromosome (SCC), has been thought to be nonreplicative, we predicted DNA-replication-related functions for some of the conserved proteins encoded by SCC. We show that one of these, Cch, is homologous to the self-loading initiator helicases of an unrelated family of genomic islands, that it is an active 3'-to-5' helicase and that the adjacent ORF encodes a single-stranded DNA–binding protein. Our 2.9-Å crystal structure of intact Cch shows that it forms a hexameric ring. Cch, like the archaeal and eukaryotic MCM-family replicative helicases, belongs to the pre–sensor II insert clade of AAA+ ATPases. Additionally, we found that SCC elements are part of a broader family of mobile elements, all of which encode a replication initiator upstream of their recombinases. Replication after excision would enhance the efficiency of horizontal gene transfer.

Mechanism of Archaeal MCM Helicase Recruitment to DNA Replication Origins

Science.gov (United States)

Samson, Rachel Y.; Abeyrathne, Priyanka D.; Bell, Stephen D.

2015-01-01

Summary Cellular DNA replication origins direct the recruitment of replicative helicases via the action of initiator proteins belonging to the AAA+ superfamily of ATPases. Archaea have a simplified subset of the eukaryotic DNA replication machinery proteins and possess initiators that appear ancestral to both eukaryotic Orc1 and Cdc6. We have reconstituted origin-dependent recruitment of the homohexameric archaeal MCM in vitro with purified recombinant proteins. Using this system, we reveal that archaeal Orc1-1 fulfills both Orc1 and Cdc6 functions by binding to a replication origin and directly recruiting MCM helicase. We identify the interaction interface between these proteins and reveal how ATP binding by Orc1-1 modulates recruitment of MCM. Additionally, we provide evidence that an open-ring form of the archaeal MCM homohexamer is loaded at origins. PMID:26725007

DNA binding polarity, dimerization, and ATPase ring remodeling in the CMG helicase of the eukaryotic replisome

Science.gov (United States)

Costa, Alessandro; Renault, Ludovic; Swuec, Paolo; Petojevic, Tatjana; Pesavento, James J; Ilves, Ivar; MacLellan-Gibson, Kirsty; Fleck, Roland A; Botchan, Michael R; Berger, James M

2014-01-01

The Cdc45/Mcm2-7/GINS (CMG) helicase separates DNA strands during replication in eukaryotes. How the CMG is assembled and engages DNA substrates remains unclear. Using electron microscopy, we have determined the structure of the CMG in the presence of ATPγS and a DNA duplex bearing a 3′ single-stranded tail. The structure shows that the MCM subunits of the CMG bind preferentially to single-stranded DNA, establishes the polarity by which DNA enters into the Mcm2-7 pore, and explains how Cdc45 helps prevent DNA from dissociating from the helicase. The Mcm2-7 subcomplex forms a cracked-ring, right-handed spiral when DNA and nucleotide are bound, revealing unexpected congruencies between the CMG and both bacterial DnaB helicases and the AAA+ motor of the eukaryotic proteasome. The existence of a subpopulation of dimeric CMGs establishes the subunit register of Mcm2-7 double hexamers and together with the spiral form highlights how Mcm2-7 transitions through different conformational and assembly states as it matures into a functional helicase. DOI: http://dx.doi.org/10.7554/eLife.03273.001 PMID:25117490

The Q Motif Is Involved in DNA Binding but Not ATP Binding in ChlR1 Helicase.

Directory of Open Access Journals (Sweden)

Hao Ding

Full Text Available Helicases are molecular motors that couple the energy of ATP hydrolysis to the unwinding of structured DNA or RNA and chromatin remodeling. The conversion of energy derived from ATP hydrolysis into unwinding and remodeling is coordinated by seven sequence motifs (I, Ia, II, III, IV, V, and VI. The Q motif, consisting of nine amino acids (GFXXPXPIQ with an invariant glutamine (Q residue, has been identified in some, but not all helicases. Compared to the seven well-recognized conserved helicase motifs, the role of the Q motif is less acknowledged. Mutations in the human ChlR1 (DDX11 gene are associated with a unique genetic disorder known as Warsaw Breakage Syndrome, which is characterized by cellular defects in genome maintenance. To examine the roles of the Q motif in ChlR1 helicase, we performed site directed mutagenesis of glutamine to alanine at residue 23 in the Q motif of ChlR1. ChlR1 recombinant protein was overexpressed and purified from HEK293T cells. ChlR1-Q23A mutant abolished the helicase activity of ChlR1 and displayed reduced DNA binding ability. The mutant showed impaired ATPase activity but normal ATP binding. A thermal shift assay revealed that ChlR1-Q23A has a melting point value similar to ChlR1-WT. Partial proteolysis mapping demonstrated that ChlR1-WT and Q23A have a similar globular structure, although some subtle conformational differences in these two proteins are evident. Finally, we found ChlR1 exists and functions as a monomer in solution, which is different from FANCJ, in which the Q motif is involved in protein dimerization. Taken together, our results suggest that the Q motif is involved in DNA binding but not ATP binding in ChlR1 helicase.

Saue - Hera ja Heraklese kaitse all / Jüri Kuuskemaa

Index Scriptorium Estoniae

Kuuskemaa, Jüri, 1942-

2003-01-01

Saue mõisa ajaloost, omanikest, härrastemajast (arhitekt Johann Schultz), selle restaureeritud ja hästi säilinud ruumidest, inglispärasest tagaaiast, barokipäraselt regulaarse kujundusega eesaiast, Heraklese ja jumalanna (Hera, Juno) kujust aias, pargipaviljonist. 12 ill

High P{sub T} leptons and single W boson production at HERA

Energy Technology Data Exchange (ETDEWEB)

Korcsak-Gorzo, Katherine

2010-12-15

A search for isolated electrons and muons with high transverse momentum in events with large missing transverse momentum has been conducted. The results have been found to be compatible with the Standard Model expectations. The cross section for single W production has been measured and the total cross section in electron-proton collisions at HERA has been found to be {sigma}(ep {yields} eWX) = 0.93{sub -0.23}{sup +0.26}(stat.){+-}0.08(syst.) pb. The measurements are based on the complete available ZEUS data sets from the HERA I and II running periods taken between 1994-2007. (orig.)

Archaeal MCM Proteins as an Analog for the Eukaryotic Mcm2–7 Helicase to Reveal Essential Features of Structure and Function

Science.gov (United States)

Miller, Justin M.; Enemark, Eric J.

2015-01-01

In eukaryotes, the replicative helicase is the large multisubunit CMG complex consisting of the Mcm2–7 hexameric ring, Cdc45, and the tetrameric GINS complex. The Mcm2–7 ring assembles from six different, related proteins and forms the core of this complex. In archaea, a homologous MCM hexameric ring functions as the replicative helicase at the replication fork. Archaeal MCM proteins form thermostable homohexamers, facilitating their use as models of the eukaryotic Mcm2–7 helicase. Here we review archaeal MCM helicase structure and function and how the archaeal findings relate to the eukaryotic Mcm2–7 ring. PMID:26539061

Measurement of elastic ω photoproduction at HERA

International Nuclear Information System (INIS)

Derrick, M.; Krakauer, D.; Magill, S.

1996-08-01

The reaction γp→ωp (ω→π + π - π 0 and π 0 →γγ) has been studied in ep interactions using the ZEUS detector at photon-proton centre-of-mass energies between 70 and 90 GeV and vertical stroke t vertical stroke 2 , where t is the squared four momentum transferred at the proton vertex. The elastic ω photoproduction cross section has been measured to be σ γp→ωp =1.21±0.12±0.23 μb. The differential cross section dσ γp→ωp /d vertical stroke t vertical stroke has an exponential shape e -b vertical stroke t vertical stroke with a slope b=10.0±1.2±1.3 GeV -2 . The angular distributions of the decay pions are consistent with s-channel helicity conservation. When compared to low energy data, the features of ω photoproduction as measured at HERA energies are in agreement with those of a soft diffractive process. Previous measurements of the ρ 0 and φ photoproduction cross sections at HERA show a similar behaviour. (orig.)

Physics results from the first electron-proton collider HERA

Energy Technology Data Exchange (ETDEWEB)

Roeck, A de

1995-03-01

After two years of experimenting at the new ep collider HERA many new results have been obtained. In this report we have presented results on interactions of high energy photons with matter, and showed that similar to hadronic interactions, hard scattering is observed in these collisions. The different photoproduction processes have been isolated, and a first attempt was made to measure the structure of the photon at HERA. A new region has been explored for deep inelastic scattering interactions. The proton structure is probed to very small values of Bjorken-x, showing a large increase of with decreasing x. Events with a large rapidity gap have been observed and are identified as diffractive scattering. The first electroweak results became available by studying the production of charged current events. Searches for new, exotic phenomena were made, but no evidence for the breakdown of the standard model has been found. (orig.)

Cooperation of DNA-PKcs and WRN helicase in the maintenance of telomeric D-loops

DEFF Research Database (Denmark)

Kusumoto-Matsuo, Rika; Opresko, Patricia L; Ramsden, Dale

2010-01-01

Werner syndrome is an inherited human progeriod syndrome caused by mutations in the gene encoding the Werner Syndrome protein, WRN. It has both 3'-5' DNA helicase and exonuclease activities, and is suggested to have roles in many aspects of DNA metabolism, including DNA repair and telomere...... D-loop model substrate. In addition, the length of telomeric G-tails decreases in DNA-PKcs knockdown cells, and this phenotype is reversed by overexpression of WRN helicase. These results suggest that WRN and DNA-PKcs may cooperatively prevent G-tail shortening in vivo....

Non-B DNA Secondary Structures and Their Resolution by RecQ Helicases

Directory of Open Access Journals (Sweden)

Sudha Sharma

2011-01-01

Full Text Available In addition to the canonical B-form structure first described by Watson and Crick, DNA can adopt a number of alternative structures. These non-B-form DNA secondary structures form spontaneously on tracts of repeat sequences that are abundant in genomes. In addition, structured forms of DNA with intrastrand pairing may arise on single-stranded DNA produced transiently during various cellular processes. Such secondary structures have a range of biological functions but also induce genetic instability. Increasing evidence suggests that genomic instabilities induced by non-B DNA secondary structures result in predisposition to diseases. Secondary DNA structures also represent a new class of molecular targets for DNA-interactive compounds that might be useful for targeting telomeres and transcriptional control. The equilibrium between the duplex DNA and formation of multistranded non-B-form structures is partly dependent upon the helicases that unwind (resolve these alternate DNA structures. With special focus on tetraplex, triplex, and cruciform, this paper summarizes the incidence of non-B DNA structures and their association with genomic instability and emphasizes the roles of RecQ-like DNA helicases in genome maintenance by resolution of DNA secondary structures. In future, RecQ helicases are anticipated to be additional molecular targets for cancer chemotherapeutics.

Charm, Beauty and Top at HERA

International Nuclear Information System (INIS)

Behnke, O.; Geiser, A.; Lisovyi, M.

2015-06-01

Results on open charm and beauty production and on the search for top production in high-energy electron-proton collisions at HERA are reviewed. This includes a discussion of relevant theoretical aspects, a summary of the available measurements and measurement techniques, and their impact on improved understanding of QCD and its parameters, such as parton density functions and charm- and beauty-quark masses. The impact of these results on measurements at the LHC and elsewhere is also addressed.

Structural view of the helicase reveals that Zika virus uses a conserved mechanism for unwinding RNA.

Science.gov (United States)

Li, Lei; Wang, Jin; Jia, Zhihui; Shaw, Neil

2018-04-01

Recent studies suggest a link between infection by Zika virus (ZIKV) and the development of neurological complications. The lack of ZIKV-specific therapeutics has alarmed healthcare professionals worldwide. Here, crystal structures of apo and AMPPNP- and Mn 2+ -bound forms of the essential helicase of ZIKV refined to 1.78 and 1.3 Å resolution, respectively, are reported. The structures reveal a conserved trimodular topology of the helicase. ATP and Mn 2+ are tethered between two RecA-like domains by conserved hydrogen-bonding interactions. The binding of ligands induces the movement of backbone Cα and side-chain atoms. Numerous solvent molecules are observed in the vicinity of the AMPPNP, suggesting a role in catalysis. These high-resolution structures could be useful for the design of inhibitors targeting the helicase of ZIKV for the treatment of infections caused by ZIKV.

The outer tracker detector of the HERA-B experiment. Pt. 3. Operation and performance

International Nuclear Information System (INIS)

Albrecht, H.; Bauer, T.S.; Utrecht Univ.; Beck, M.

2006-12-01

In this paper we describe the operation and performance of the HERA-B Outer Tracker, a 112674 channel system of planar drift tube layers. The performance of the HERA-B Outer Tracker system fullfilled all requirements for stable and efficient operation in a hadronic environment, thus confirming the adequacy of the honeycomb drift tube technology and of the front-end readout system. The detector was stably operated with a gas gain of 3 . 10 4 in an Ar/CF 4 /CO 2 (65:35:5) gas mixture, yielding a good efficiency for triggering and track reconstruction, larger than 95 % for tracks with momenta above 5 GeV/c. The hit resolution of the drift cells was 300 to 320 μm and the relative momentum resolution can be described as: σ(p)/p(%) = (1.61 ± 0.02) + (0.0051 ± 0.0006) . p. At the end of the HERA-B running no aging effects in the Outer Tracker cells were observed. (orig.)

Scaled momentum spectra in deep inelastic scattering at HERA

NARCIS (Netherlands)

Abramowicz, H.; Abt, I.; Adamczyk, L.; Adamus, M.; Antonelli, S.; Antonioli, P.; Antonov, A.; Arneodo, M.; Aushev, V.; Aushev, Y.; Bachynska, O.; Bamberger, A.; Barakbaev, A. N.; Barbagli, G.; Bari, G.; Barreiro, F.; Bartsch, D.; Basile, M.; Behnke, O.; Behr, J.; Behrens, U.; Bellagamba, L.; Bertolin, A.; Bhadra, S.; Bindi, M.; Blohm, C.; Bold, T.; Boos, E. G.; Borodin, M.; Borras, K.; Boscherini, D.; Boutle, S. K.; Brock, I.; Brownson, E.; Brugnera, R.; Bruemmer, N.; Bruni, A.; Bruni, G.; Brzozowska, B.; Bussey, P. J.; Butterworth, J. M.; Bylsma, B.; Caldwell, A.; Capua, M.; Carlin, R.; Catterall, C. D.; Chekanov, S.; Chwastowski, J.; Ciborowski, J.; Pellegrino, A.

Charged particle production has been studied in neutral current deep inelastic ep scattering with the ZEUS detector at HERA using an integrated luminosity of 0.44 fb(-1). Distributions of scaled momenta in the Breit frame are presented for particles in the current fragmentation region. The evolution

Jet photoproduction at HERA

International Nuclear Information System (INIS)

Frixione, S.

1997-01-01

We compute various kinematical distributions for one-jet and two-jet inclusive photoproduction at HERA. Our results are accurate to next-to-leading order in QCD. We use the subtraction method for the cancellation of infrared singularities. We perform a thorough study of the reliability of QCD predictions; in particular, we consider the scale dependence of our results and discuss the cases when the perturbative expansion might break down. We also deal with the problem of the experimental definition of the pointlike and hadronic components of the incident photon, and briefly discuss the sensitivity of QCD predictions upon the input parameters of the calculation, like α S and the parton densities. (orig.)

Measurement of charm fragmentation fractions in photoproduction at HERA

Energy Technology Data Exchange (ETDEWEB)

Abramowicz, H. [Tel Aviv Univ. (Israel). School of Physics; Max-Planck-Institute for Physics, Munich (Germany); Abt, I. [Max-Planck-Institute for Physics, Muinch (Germany); Adamczyk, L. [AGH-Univ. of Science and Technology, Krakow (Poland). Faculty of Physics and Applied Computer Science] [and others; Collaboration: ZEUS Collaboration

2013-06-15

The production of D{sup 0}, D{sup *+}, D{sup +}, D{sub s}{sup +} and {Lambda}{sub c}{sup +} charm hadrons and their antiparticles in ep scattering at HERA has been studied with the ZEUS detector, using a total integrated luminosity of 372 pb{sup -1}. The fractions of charm quarks hadronising into a particular charm hadron were derived. In addition, the ratio of neutral to charged D-meson production rates, the fraction of charged D mesons produced in a vector state, and the strangeness-suppression factor have been determined. The measurements have been performed in the photoproduction regime. The charm hadrons were reconstructed in the range of transverse momentum p{sub T} > 3.8GeV and pseudorapidity vertical stroke {eta} vertical stroke <1.6. The charm fragmentation fractions are compared to previous results from HERA and from e{sup +}e{sup -} experiments. The data support the hypothesis that fragmentation is independent of the production process.

A Search for Leptoquark Bosons in e^-p Collisions at HERA

CERN Document Server

Adloff, C.; Andrieu, B.; Anthonis, T.; Arkadov, V.; Astvatsatourov, A.; Babaev, A.; Bahr, J.; Baranov, P.; Barrelet, E.; Bartel, W.; Bate, P.; Becker, J.; Beglarian, A.; Behnke, O.; Beier, C.; Belousov, A.; Benisch, T.; Berger, Christoph; Berndt, T.; Bizot, J.C.; Boehme, J.; Boudry, V.; Braunschweig, W.; Brisson, V.; Broker, H.B.; Brown, D.P.; Bruckner, W.; Bruncko, D.; Burger, J.; Busser, F.W.; Bunyatyan, A.; Burrage, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Cao, Jun; Caron, S.; Cassol-Brunner, F.; Clarke, D.; Clerbaux, B.; Collard, C.; Contreras, J.G.; Coppens, Y.R.; Coughlan, J.A.; Cousinou, M.C.; Cox, B.E.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Dau, W.D.; Daum, K.; Davidsson, M.; Delcourt, B.; Delerue, N.; Demirchyan, R.; De Roeck, A.; De Wolf, E.A.; Diaconu, C.; Dingfelder, J.; Dixon, P.; Dodonov, V.; Dowell, J.D.; Droutskoi, A.; Dubak, A.; Duprel, C.; Eckerlin, Guenter; Eckstein, D.; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Eisenhandler, E.; Ellerbrock, M.; Elsen, E.; Erdmann, M.; Erdmann, W.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Felst, R.; Ferencei, J.; Ferron, S.; Fleischer, M.; Fleming, Y.H.; Flugge, G.; Fomenko, A.; Foresti, I.; Formanek, J.; Franke, G.; Gabathuler, E.; Gabathuler, K.; Garvey, J.; Gassner, J.; Gayler, Joerg; Gerhards, R.; Gerlich, C.; Ghazaryan, Samvel; Goerlich, L.; Gogitidze, N.; Goldberg, M.; Grab, C.; Grassler, H.; Greenshaw, T.; Grindhammer, Guenter; Hadig, T.; Haidt, D.; Hajduk, L.; Haller, J.; Haynes, W.J.; Heinemann, B.; Heinzelmann, G.; Henderson, R.C.W.; Hengstmann, S.; Henschel, H.; Heremans, R.; Herrera, G.; Herynek, I.; Hildebrandt, M.; Hilgers, M.; Hiller, K.H.; Hladky, J.; Hoting, P.; Hoffmann, D.; Horisberger, R.; Hurling, S.; Ibbotson, M.; Issever, C .; Jacquet, M.; Jaffre, M.; Janauschek, L.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, C.; Johnson, D.P.; Jones, M.A.S.; Jung, H.; Kant, D.; Kapichine, M.; Karlsson, M.; Karschnick, O.; Keil, F.; Keller, N.; Kennedy, J.; Kenyon, I.R.; Kermiche, S.; Kiesling, Christian M.; Kjellberg, P.; Klein, M.; Kleinwort, C.; Kluge, T.; Knies, G.; Koblitz, B.; Kolya, S.D.; Korbel, V.; Kostka, P.; Kotelnikov, S.K.; Koutouev, R.; Koutov, A.; Krehbiel, H.; Kroseberg, J.; Kruger, K.; Kupper, A.; Kuhr, T.; Kurca, T.; Lahmann, R.; Lamb, D.; Landon, M.P.J.; Lange, W.; Lastovicka, T.; Laycock, P.; Lebailly, E.; Lebedev, A.; Leissner, B.; Lemrani, R.; Lendermann, V.; Levonian, S.; Lindstroem, M.; List, B.; Lobodzinska, E.; Lobodzinski, B.; Loginov, A.; Loktionova, N.; Lubimov, V.; Luders, S.; Luke, D.; Lytkin, L.; Mahlke-Kruger, H.; Malden, N.; Malinovski, E.; Malinovski, I.; Maracek, R.; Marage, P.; Marks, J.; Marshall, R.; Martyn, H.U.; Martyniak, J.; Maxfield, S.J.; Meer, D.; Mehta, A.; Meier, K.; Meyer, A.B.; Meyer, H.; Meyer, J.; Meyer, P.O.; Mikocki, S.; Milstead, D.; Mkrtchyan, T.; Mohr, R.; Mohrdieck, S.; Mondragon, M.N.; Moreau, F.; Morozov, A.; Morris, J.V.; Muller, K.; Murin, P.; Nagovizin, V.; Naroska, B.; Naumann, J.; Naumann, T.; Nellen, G.; Newman, Paul R.; Nicholls, T.C.; Niebergall, F.; Niebuhr, C.; Nix, O.; Nowak, G.; Olsson, J.E.; Ozerov, D.; Panassik, V.; Pascaud, C.; Patel, G.D.; Peez, M.; Perez, E.; Phillips, J.P.; Pitzl, D.; Poschl, R.; Potachnikova, I.; Povh, B.; Rabbertz, K.; Radel, G.; Rauschenberger, J.; Reimer, P.; Reisert, B.; Reyna, D.; Risler, C.; Rizvi, E.; Robmann, P.; Roosen, R.; Rostovtsev, A.; Rusakov, S.; Rybicki, K.; Sankey, D.P.C.; Scheins, J.; Schilling, F.P.; Schleper, P.; Schmidt, D.; Schmidt, S.; Schmitt, S.; Schneider, M.; Schoeffel, L.; Schoning, A.; Schorner, T.; Schroder, V.; Schultz-Coulon, H.C.; Schwanenberger, C.; Sedlak, K.; Sefkow, F.; Chekelian, V.; Sheviakov, I.; Shtarkov, L.N.; Sirois, Y.; Sloan, T.; Smirnov, P.; Soloviev, Y.; South, D.; Spaskov, V.; Specka, Arnd E.; Spitzer, H.; Stamen, R.; Stella, B.; Stiewe, J.; Straumann, U.; Swart, M.; Tasevsky, M.; Tchernyshov, V.; Tchetchelnitski, S.; Thompson, Graham; Thompson, P.D.; Tobien, N.; Traynor, D.; Truoel, Peter; Tsipolitis, G.; Tsurin, I.; Turnau, J.; Turney, J.E.; Tzamariudaki, E.; Udluft, S.; Urban, Marcel; Usik, A.; Valkar, S.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Vassiliev, S.; Vazdik, Y.; Vichnevski, A.; Wacker, K.; Wallny, R.; Waugh, B.; Weber, G.; Weber, M.; Wegener, D.; Werner, C.; Werner, M.; Werner, N.; White, G.; Wiesand, S.; Wilksen, T.; Winde, M.; Winter, G.G.; Wissing, C.; Wobisch, M.; Woehrling, E.E.; Wunsch, E.; Wyatt, A.C.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhokin, A.; Zomer, F.; Zsembery, J.; Zur Nedden, M.

2001-01-01

A search for scalar and vector leptoquarks coupling to first generation fermions is performed in the H1 experiment at the ep collider HERA. The analysis uses e^- p data collected in 1998 and 1999 at a centre-of-mass energy of 320 GeV, corresponding to an integrated luminosity of 15 pb^-1. No evidence for the direct production of such particles is found in a data sample with a large transverse momentum final state electron or with large missing transverse momentum, and constraints on leptoquark models are established. For a Yukawa coupling of electromagnetic strength leptoquarks are excluded for masses up to 290 GeV. This analysis complements the leptoquark searches performed previously using data collected whilst HERA was operating with positrons instead of electrons.

Mutational analysis of an archaeal minichromosome maintenance protein exterior hairpin reveals critical residues for helicase activity and DNA binding

Directory of Open Access Journals (Sweden)

Brewster Aaron S

2010-08-01

Full Text Available Abstract Background The mini-chromosome maintenance protein (MCM complex is an essential replicative helicase for DNA replication in Archaea and Eukaryotes. While the eukaryotic complex consists of six homologous proteins (MCM2-7, the archaeon Sulfolobus solfataricus has only one MCM protein (ssoMCM, six subunits of which form a homohexamer. We have recently reported a 4.35Å crystal structure of the near full-length ssoMCM. The structure reveals a total of four β-hairpins per subunit, three of which are located within the main channel or side channels of the ssoMCM hexamer model generated based on the symmetry of the N-terminal Methanothermobacter thermautotrophicus (mtMCM structure. The fourth β-hairpin, however, is located on the exterior of the hexamer, near the exit of the putative side channels and next to the ATP binding pocket. Results In order to better understand this hairpin's role in DNA binding and helicase activity, we performed a detailed mutational and biochemical analysis of nine residues on this exterior β-hairpin (EXT-hp. We examined the activities of the mutants related to their helicase function, including hexamerization, ATPase, DNA binding and helicase activities. The assays showed that some of the residues on this EXT-hp play a role for DNA binding as well as for helicase activity. Conclusions These results implicate several current theories regarding helicase activity by this critical hexameric enzyme. As the data suggest that EXT-hp is involved in DNA binding, the results reported here imply that the EXT-hp located near the exterior exit of the side channels may play a role in contacting DNA substrate in a manner that affects DNA unwinding.

Search for Excited Electrons in ep Collisions at HERA

CERN Document Server

Aaron, F.D.; Andreev, V.; Antunovic, B.; Aplin, S.; Asmone, A.; Astvatsatourov, A.; Bacchetta, A.; Backovic, S.; Baghdasaryan, A.; Baranov, P.; Barrelet, E.; Bartel, W.; Beckingham, M.; Begzsuren, K.; Behnke, O.; Belousov, A.; Berger, N.; Bizot, J.C.; Boenig, M.-O.; Boudry, V.; Bozovic-Jelisavcic, I.; Bracinik, J.; Brandt, G.; Brinkmann, M.; Brisson, V.; Bruncko, D.; Bunyatyan, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Cantun Avila, K.B.; Cassol-Brunner, F.; Cerny, K.; Cerny, V.; Chekelian, V.; Cholewa, A.; Contreras, J.G.; Coughlan, J.A.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Daum, K.; Deak, M.; de Boer, Y.; Delcourt, B.; Del Degan, M.; Delvax, J.; De Roeck, A.; De Wolf, E.A.; Diaconu, C.; Dodonov, V.; Dossanov, A.; Dubak, A.; Eckerlin, G.; Efremenko, V.; Egli, S.; Eliseev, A.; Elsen, E.; Essenov, S.; Falkiewicz, A.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Felst, R.; Feltesse, J.; Ferencei, J.; Finke, L.; Fleischer, M.; Fomenko, A.; Gabathuler, E.; Gayler, J.; Ghazaryan, Samvel; Glazov, A.; Glushkov, I.; Goerlich, L.; Goettlich, M.; Gogitidze, N.; Gouzevitch, M.; Grab, C.; Greenshaw, T.; Grell, B.R.; Grindhammer, G.; Habib, S.; Haidt, D.; Hansson, M.; Helebrant, C.; Henderson, R.C.W.; Henschel, H.; Herrera, G.; Hildebrandt, M.; Hiller, K.H.; Hoffmann, D.; Horisberger, R.; Hovhannisyan, A.; Hreus, T.; Jacquet, M.; Janssen, M.E.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, D.P.; Jung, Andreas Werner; Jung, H.; Kapichine, M.; Katzy, J.; Kenyon, I.R.; Kiesling, C.; Klein, M.; Kleinwort, C.; Klimkovich, T.; Kluge, T.; Knutsson, A.; Kogler, R.; Korbel, V.; Kostka, P.; Kraemer, M.; Krastev, K.; Kretzschmar, J.; Kropivnitskaya, A.; Kruger, K.; Kutak, K.; Landon, M.P.J.; Lange, W.; Lastovicka-Medin, G.; Laycock, P.; Lebedev, A.; Leibenguth, G.; Lendermann, V.; Levonian, S.; Li, G.; Lipka, K.; Liptaj, A.; List, B.; List, J.; Loktionova, N.; Lopez-Fernandez, R.; Lubimov, V.; Lucaci-Timoce, A.-I.; Lytkin, L.; Makankine, A.; Malinovski, E.; Marage, P.; Marti, Ll.; Martyn, H.-U.; Maxfield, S.J.; Mehta, A.; Meier, K.; Meyer, A.B.; Meyer, H.; Meyer, H.; Meyer, J.; Michels, V.; Mikocki, S.; Milcewicz-Mika, I.; Moreau, F.; Morozov, A.; Morris, J.V.; Mozer, Matthias Ulrich; Mudrinic, M.; Muller, K.; Murin, P.; Nankov, K.; Naroska, B.; Naumann, Th.; Newman, Paul R.; Niebuhr, C.; Nikiforov, A.; Nowak, G.; Nowak, K.; Nozicka, M.; Olivier, B.; Olsson, J.E.; Osman, S.; Ozerov, D.; Palichik, V.; Panagoulias, I.; Pandurovic, M.; Papadopoulou, Th.; Pascaud, C.; Patel, G.D.; Pejchal, O.; Peng, H.; Perez, E.; Petrukhin, A.; Picuric, I.; Piec, S.; Pitzl, D.; Placakyte, R.; Polifka, R.; Povh, B.; Preda, T.; Radescu, V.; Rahmat, A.J.; Raicevic, N.; Raspiareza, A.; Ravdandorj, T.; Reimer, P.; Rizvi, E.; Robmann, P.; Roland, B.; Roosen, R.; Rostovtsev, A.; Rotaru, M.; Ruiz Tabasco, J.E.; Rurikova, Z.; Rusakov, S.; Salek, D.; Salvaire, F.; Sankey, D.P.C.; Sauter, M.; Sauvan, E.; Schmidt, S.; Schmitt, S.; Schmitz, C.; Schoeffel, L.; Schoning, A.; Schultz-Coulon, H.-C.; Sefkow, F.; Shaw-West, R.N.; Sheviakov, I.; Shtarkov, L.N.; Shushkevich, S.; Sloan, T.; Smiljanic, Ivan; Smirnov, P.; Soloviev, Y.; Sopicki, P.; South, D.; Spaskov, V.; Specka, Arnd E.; Staykova, Z.; Steder, M.; Stella, B.; Straumann, U.; Sunar, D.; Sykora, T.; Tchoulakov, V.; Thompson, G.; Thompson, P.D.; Toll, T.; Tomasz, F.; Tran, T.H.; Traynor, D.; Trinh, T.N.; Truol, P.; Tsakov, I.; Tseepeldorj, B.; Tsurin, I.; Turnau, J.; Tzamariudaki, E.; Urban, K.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Vargas Trevino, A.; Vazdik, Y.; Vinokurova, S.; Volchinski, V.; Wegener, D.; Wessels, M.; Wissing, Ch.; Wunsch, E.; Yeganov, V.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhelezov, A.; Zhokin, A.; Zhu, Y.C.; Zimmermann, T.; Zohrabyan, H.; Zomer, F.

2008-01-01

A search for excited electrons is performed using the full $e^{\\pm}p$ data sample collected by the H1 experiment at HERA, corresponding to a total luminosity of 475 pb$^{-1}$. The electroweak decays of excited electrons ${e}^{*}\\to{e}{\\gamma}$, ${e}^{*}\\to{e}Z$ and ${e}^{*}{\\to}\

Analysis of events with isolated leptons and missing transverse momentum in ep collisions at HERA

Energy Technology Data Exchange (ETDEWEB)

Brandt, G.

2007-02-07

A study of events with isolated leptons and missing transverse momentum in ep collisions is presented. Within the Standard Model (SM) such topologies are expected mainly from production of real W bosons with subsequent leptonic decay. This thesis continues the analysis of such events done in the HERA-1 period where an excess over the SM prediction was observed for events with high hadronic transverse momentum P{sup X}{sub T}>25 GeV. New data of the HERA-2 period are added. The analysed data sample recorded in e{sup +}p collisions corresponds to an integrated luminosity of 220 pb{sup -1} which is a factor of two more with respect to the HERA-1 analysis. The e{sup -}p data correspond to 186 pb{sup -1} which is a factor of 13 more with respect to HERA-1. All three lepton generations (electrons muons and tau leptons) are analysed. In the electron and muon channels a total of 53 events are observed in 406 pb{sup -1}. This compares well to the SM expectation of 53.7{+-}6.5 events, dominated by W production. However a difference in the event rate is observed for different electron beam charges. In e{sup +}p data the excess of events with P{sup X}{sub T}>25 GeV is sustained, while the e{sup -}p data agree with the SM. In the tau channel 18 events are observed in all HERA data, with 20{+-}3 expected from the SM. The events are dominated by irreducible background from charged currents. The contribution from W production amounts to about 22%. One event with P{sup X}{sub T}>25 GeV is observed, where 1.4{+-}0.3 are expected from the SM. (orig.)

The eIF4AIII RNA helicase is a critical determinant of human cytomegalovirus replication

Energy Technology Data Exchange (ETDEWEB)

Ziehr, Ben; Lenarcic, Erik; Cecil, Chad; Moorman, Nathaniel J., E-mail: nmoorman@med.unc.edu

2016-02-15

Human cytomegalovirus (HCMV) was recently shown to encode a large number of spliced mRNAs. While the nuclear export of unspliced viral transcripts has been extensively studied, the role of host mRNA export factors in HCMV mRNA trafficking remains poorly defined. We found that the eIF4AIII RNA helicase, a component of the exon junction complex, was necessary for efficient virus replication. Depletion of eIF4AIII limited viral DNA accumulation, export of viral mRNAs from the nucleus, and the production of progeny virus. However eIF4AIII was dispensable for the association of viral transcripts with ribosomes. We found that pateamine A, a natural compound that inhibits both eIF4AI/II and eIF4AIII, has potent antiviral activity and inhibits HCMV replication throughout the virus lytic cycle. Our results demonstrate that eIF4AIII is required for efficient HCMV replication, and suggest that eIF4A family helicases may be a new class of targets for the development of host-directed antiviral therapeutics. - Highlights: • The host eIF4AIII RNA helicase is required for efficient HCMV replication. • Depleting eIF4AIII inhibited the nuclear export of HCMV mRNAs. • HCMV mRNAs did not require eIF4AIII to associate with polyribosomes. • The eIF4A family helicases may be new targets for host-directed antiviral drugs.

The eIF4AIII RNA helicase is a critical determinant of human cytomegalovirus replication

International Nuclear Information System (INIS)

Ziehr, Ben; Lenarcic, Erik; Cecil, Chad; Moorman, Nathaniel J.

2016-01-01

Human cytomegalovirus (HCMV) was recently shown to encode a large number of spliced mRNAs. While the nuclear export of unspliced viral transcripts has been extensively studied, the role of host mRNA export factors in HCMV mRNA trafficking remains poorly defined. We found that the eIF4AIII RNA helicase, a component of the exon junction complex, was necessary for efficient virus replication. Depletion of eIF4AIII limited viral DNA accumulation, export of viral mRNAs from the nucleus, and the production of progeny virus. However eIF4AIII was dispensable for the association of viral transcripts with ribosomes. We found that pateamine A, a natural compound that inhibits both eIF4AI/II and eIF4AIII, has potent antiviral activity and inhibits HCMV replication throughout the virus lytic cycle. Our results demonstrate that eIF4AIII is required for efficient HCMV replication, and suggest that eIF4A family helicases may be a new class of targets for the development of host-directed antiviral therapeutics. - Highlights: • The host eIF4AIII RNA helicase is required for efficient HCMV replication. • Depleting eIF4AIII inhibited the nuclear export of HCMV mRNAs. • HCMV mRNAs did not require eIF4AIII to associate with polyribosomes. • The eIF4A family helicases may be new targets for host-directed antiviral drugs.

BLM helicase suppresses recombination at G-quadruplex motifs in transcribed genes

NARCIS (Netherlands)

van Wietmarschen, Niek; Merzouk, Sarra; Halsema, Nancy; Spierings, Diana C J; Guryev, Victor; Lansdorp, Peter M

2018-01-01

Bloom syndrome is a cancer predisposition disorder caused by mutations in the BLM helicase gene. Cells from persons with Bloom syndrome exhibit striking genomic instability characterized by excessive sister chromatid exchange events (SCEs). We applied single-cell DNA template strand sequencing

Heavy quark production at the TEVATRON and HERA using kt-factorization with CCFM evolution

International Nuclear Information System (INIS)

Jung, H.

2001-10-01

The application of k t -factorization supplemented with the CCFM small-x evolution equation to heavy quark production at the TEVATRON and at HERA is discussed. The bb production cross sections at the TEVATRON can be consistently described using the k t -factorization formalism together with the unintegrated gluon density obtained within the CCFM evolution approach from a fit to HERA F 2 data. Special attention is drawn to the comparison with measured visible cross sections, which are compared to the hadron level Monte Carlo generator Cascade. (orig.)

Identification and Biochemical Characterization of Halisulfate 3 and Suvanine as Novel Inhibitors of Hepatitis C Virus NS3 Helicase from a Marine Sponge

Directory of Open Access Journals (Sweden)

Atsushi Furuta

2014-01-01

Full Text Available Hepatitis C virus (HCV is an important etiological agent that is responsible for the development of chronic hepatitis, liver cirrhosis, and hepatocellular carcinoma. HCV nonstructural protein 3 (NS3 helicase is a possible target for novel drug development due to its essential role in viral replication. In this study, we identified halisulfate 3 (hal3 and suvanine as novel NS3 helicase inhibitors, with IC50 values of 4 and 3 µM, respectively, from a marine sponge by screening extracts of marine organisms. Both hal3 and suvanine inhibited the ATPase, RNA binding, and serine protease activities of NS3 helicase with IC50 values of 8, 8, and 14 µM, and 7, 3, and 34 µM, respectively. However, the dengue virus (DENV NS3 helicase, which shares a catalytic core (consisting mainly of ATPase and RNA binding sites with HCV NS3 helicase, was not inhibited by hal3 and suvanine, even at concentrations of 100 µM. Therefore, we conclude that hal3 and suvanine specifically inhibit HCV NS3 helicase via an interaction with an allosteric site in NS3 rather than binding to the catalytic core. This led to the inhibition of all NS3 activities, presumably by inducing conformational changes.

Kinematic fitting of neutral current events at HERA

International Nuclear Information System (INIS)

Chaves, H.; Seifert, R.J.; Zech, G.

1993-01-01

The measurement of the scaling variables in deep inelastic scattering at HERA can be improved considerably by constraining the scattered electrons and the produced hadrons to energy-momentum conservation. It is shown how unobserved particles moving down the beam pipe and initial state radiation can be included in the kinematics. The particle momenta are adjusted in a linear least squares fit. (orig.)

DESY III, the new proton injector for HERA

International Nuclear Information System (INIS)

Hemmie, G.; Maidment, J.R.

1987-01-01

The design of a 7.5 GeV/c proton synchrotron, DESY III, which will form part of the injector chain for HERA /1/ is described. Features of the latice and brief details of sub-systems are presented. A selection of parameters and expected time schedule for the accelerator which is at present under construction at the DESY laboratory, Hamburg, are given

Search for single top production at HERA

International Nuclear Information System (INIS)

Brandt, G.

2008-01-01

A search for single top production in e p collisions using the complete high-energy data from HERA is presented. This search is based on the analysis of events containing isolated leptons (electronic or muons) and missing transverse momentum P T miss . In the absence of a signal, an upper limit on the top production cross-section σ ep→etX tuγ T miss and the measurements of W boson polarisation fractions.

A new role for FBP21 as regulator of Brr2 helicase activity.

Science.gov (United States)

Henning, Lisa M; Santos, Karine F; Sticht, Jana; Jehle, Stefanie; Lee, Chung-Tien; Wittwer, Malte; Urlaub, Henning; Stelzl, Ulrich; Wahl, Markus C; Freund, Christian

2017-07-27

Splicing of eukaryotic pre-mRNA is carried out by the spliceosome, which assembles stepwise on each splicing substrate. This requires the concerted action of snRNPs and non-snRNP accessory proteins, the functions of which are often not well understood. Of special interest are B complex factors that enter the spliceosome prior to catalytic activation and may alter splicing kinetics and splice site selection. One of these proteins is FBP21, for which we identified several spliceosomal binding partners in a yeast-two-hybrid screen, among them the RNA helicase Brr2. Biochemical and biophysical analyses revealed that an intrinsically disordered region of FBP21 binds to an extended surface of the C-terminal Sec63 unit of Brr2. Additional contacts in the C-terminal helicase cassette are required for allosteric inhibition of Brr2 helicase activity. Furthermore, the direct interaction between FBP21 and the U4/U6 di-snRNA was found to reduce the pool of unwound U4/U6 di-snRNA. Our results suggest FBP21 as a novel key player in the regulation of Brr2. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

Ufd1-Npl4 Recruit Cdc48 for Disassembly of Ubiquitylated CMG Helicase at the End of Chromosome Replication

Directory of Open Access Journals (Sweden)

Marija Maric

2017-03-01

Full Text Available Disassembly of the Cdc45-MCM-GINS (CMG DNA helicase is the key regulated step during DNA replication termination in eukaryotes, involving ubiquitylation of the Mcm7 helicase subunit, leading to a disassembly process that requires the Cdc48 “segregase”. Here, we employ a screen to identify partners of budding yeast Cdc48 that are important for disassembly of ubiquitylated CMG helicase at the end of chromosome replication. We demonstrate that the ubiquitin-binding Ufd1-Npl4 complex recruits Cdc48 to ubiquitylated CMG. Ubiquitylation of CMG in yeast cell extracts is dependent upon lysine 29 of Mcm7, which is the only detectable site of ubiquitylation both in vitro and in vivo (though in vivo other sites can be modified when K29 is mutated. Mutation of K29 abrogates in vitro recruitment of Ufd1-Npl4-Cdc48 to the CMG helicase, supporting a model whereby Ufd1-Npl4 recruits Cdc48 to ubiquitylated CMG at the end of chromosome replication, thereby driving the disassembly reaction.

Ebselen Inhibits Hepatitis C Virus NS3 Helicase Binding to Nucleic Acid and Prevents Viral Replication

OpenAIRE

Mukherjee, Sourav; Weiner, Warren S.; Schroeder, Chad E.; Simpson, Denise S.; Hanson, Alicia M.; Sweeney, Noreena L.; Marvin, Rachel K.; Ndjomou, Jean; Kolli, Rajesh; Isailovic, Dragan; Schoenen, Frank J.; Frick, David N.

2014-01-01

The hepatitis C virus (HCV) nonstructural protein 3 (NS3) is both a protease, which cleaves viral and host proteins, and a helicase that separates nucleic acid strands, using ATP hydrolysis to fuel the reaction. Many antiviral drugs, and compounds in clinical trials, target the NS3 protease, but few helicase inhibitors that function as antivirals have been reported. This study focuses on the analysis of the mechanism by which ebselen (2-phenyl-1,2-benzisoselenazol-3-one), a compound previousl...

Search for stop production in R-parity-violating supersymmetry at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2006-11-01

A search for stop production in R-parity-violating supersymmetry has been performed in e + p interactions with the ZEUS detector at HERA, using an integrated luminosity of 65 pb -1 . At HERA, the R-parity-violating coupling λ' allows resonant squark production, e + d→q. Since the lowest-mass squark state in most supersymmetry models is the light stop, t, this search concentrated on production of t, followed either by a direct R-parity-violating decay, or by the gauge decay to b χ 1 + . No evidence for stop production was found and limits were set on λ 131 ' as a function of the stop mass in the framework of the Minimal Supersymmetric Standard Model. The results have also been interpreted in terms of constraints on the parameters of the minimal Supergravity model. (orig.)

Leading proton production in deep inelastic scattering at HERA

NARCIS (Netherlands)

Chekanov, S.; Derrick, M.; Magill, S.; Musgrave, B.; Nicholass, D.; Repond, J.; Yoshida, R.; Mattingly, M. C. K.; Antonioli, P.; Bari, G.; Bellagamba, L.; Boscherini, D.; Bruni, A.; Bruni, G.; Cindolo, G. Cara Romeo F.; Corradi, M.; Giusti, P.; Iacobucci, G.; Margotti, A.; Massam, T.; Nania, R.; Polini, A.; Antonelli, S.; Basile, M.; Bindi, M.; Cifarelli, L.; Contin, A.; Palmonari, F.; De Pasquale, S.; Sartorelli, G.; Zichichi, A.; Bartsch, D.; Brock, I.; Hartmann, H.; Hilger, E.; Jakob, H. -P.; Juengst, M.; Nuncio-Quiroz, A. E.; Samson, U.; Schoenberg, V.; Shehzadi, R.; Wlasenko, M.; Brook, N. H.; Heath, G. P.; Kaur, M.; Kaur, P.; Singh, I.; Capua, M.; Fazio, S.; Pellegrino, A.

The semi-inclusive reaction e(+)p -> e(+) Xp was studied with the ZEUS detector at HERA with an integrated luminosity of 12.8 pb(-1). The final-state proton, which was detected with the ZEUS leading proton spectrometer, carried a large fraction of the incoming proton energy, x(L) > 0.32, and its

Detailed comparison of next-to-leading order predictions for jet photoproduction at HERA.

Energy Technology Data Exchange (ETDEWEB)

Harris, B. W.; Klassen, M.; Vossebeld, J.

1999-06-02

The precision of new HERA data on jet photoproduction opens up the possibility to discriminate between different models of the photon structure. This requires equally precise theoretical predictions from perturbative QCD calculations. In the past years, next-to-leading order calculations for the photoproduction of jets at HERA have become available. Using the kinematic cuts of recent ZEUS analyses, we compare the predictions of three calculations for different dijet and three-jet distributions. We find that in general all three calculations agree within the statistical accuracy of the Monte Carlo integration yielding reliable theoretical predictions. In certain restricted regions of phase space, the calculations differ by up to 5%.

Mycobacterium smegmatis SftH exemplifies a distinctive clade of superfamily II DNA-dependent ATPases with 3′ to 5′ translocase and helicase activities

OpenAIRE

Yakovleva, Lyudmila; Shuman, Stewart

2012-01-01

Bacterial DNA helicases are nucleic acid-dependent NTPases that play important roles in DNA replication, recombination and repair. We are interested in the DNA helicases of Mycobacteria, a genus of the phylum Actinobacteria, which includes the human pathogen Mycobacterium tuberculosis and its avirulent relative Mycobacterium smegmatis. Here, we identify and characterize M. smegmatis SftH, a superfamily II helicase with a distinctive domain structure, comprising an N-terminal NTPase domain and...

Role of the hydrophilic channels of simian virus 40 T-antigen helicase in DNA replication.

Science.gov (United States)

Wang, Weiping; Manna, David; Simmons, Daniel T

2007-05-01

The simian virus 40 (SV40) hexameric helicase consists of a central channel and six hydrophilic channels located between adjacent large tier domains within each hexamer. To study the function of the hydrophilic channels in SV40 DNA replication, a series of single-point substitutions were introduced at sites not directly involved in protein-protein contacts. The mutants were characterized biochemically in various ways. All mutants oligomerized normally in the absence of DNA. Interestingly, 8 of the 10 mutants failed to unwind an origin-containing DNA fragment and nine of them were totally unable to support SV40 DNA replication in vitro. The mutants fell into four classes based on their biochemical properties. Class A mutants bound DNA normally and had normal ATPase and helicase activities but failed to unwind origin DNA and support SV40 DNA replication. Class B mutants were compromised in single-stranded DNA and origin DNA binding at low protein concentrations. They were defective in helicase activity and unwinding of the origin and in supporting DNA replication. Class C and D mutants possessed higher-than-normal single-stranded DNA binding activity at low protein concentrations. The class C mutants failed to separate origin DNA and support DNA replication. The class D mutants unwound origin DNA normally but were compromised in their ability to support DNA replication. Taken together, these results suggest that the hydrophilic channels have an active role in the unwinding of SV40 DNA from the origin and the placement of the resulting single strands within the helicase.

Leading Neutron Production and Fπ2 at HERA

International Nuclear Information System (INIS)

Borras, K.

2002-01-01

New results on leading neutron production at HERA are presented for cross sections in photoproduction, in deep inelastic scattering and in an intermediate Q 2 range. The data with medium to high photon virtuality are presented in terms of structure functions. Vertex factorization is tested for the semi-inclusive leading neutron data, as well as for events with a dijet system in the final state. (author)

Exclusive photoproduction of Υ mesons at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2009-03-01

The exclusive photoproduction reaction γ p → Υ p has been studied with the ZEUS experiment in ep collisions at HERA using an integrated luminosity of 468 pb -1 . The measurement covers the kinematic range 60 2 2 , where W is the photon-proton centre-of-mass energy and Q 2 is the photon virtuality. These results, which represent the analysis of the full ZEUS data sample for this channel, are compared to predictions based on perturbative QCD. (orig.)

Measurement of beauty production at HERA using events with muons and jets

International Nuclear Information System (INIS)

Behnke, Olaf

2005-01-01

Several new measurements of beauty production at HERA have been presented at this conference. In this talk we report about the H1 measurement using events with a muon associated to a jet. This is the first beauty analysis at HERA, where both the long lifetime and the large mass of b-flavoured hadrons are exploited to identify the beauty events, leading to an improved signal separation. Differential cross sections are measured both in photoproduction and in deep inelastic scattering. The measured data are found to be somewhat higher then perturbative QCD calculations to next-to-leading order. A significant excess is observed in certain corners of the kinematic phase space. At the end of this report new and recent beauty measurements are summarised

Neutral strangeness production with the ZEUS detector at HERA

Energy Technology Data Exchange (ETDEWEB)

Liu Chuanlei

2007-12-15

The inclusive production of the neutral strange particles, {lambda}, anti {lambda} and K{sup 0}{sub S} has been studied with the ZEUS detector at HERA. The measurement provides a way to understand the fragmentation process in ep collisions and to check the universality of this process. The strangeness cross sections have been measured and compared with Monte Carlo (MC) predictions. Over the kinematic regions of interest, no {lambda} to anti {lambda} asymmetry was observed. The relative yield of {lambda} and K{sup 0}{sub S} was determined and the result was compared with MC calculations and results from other experiments. A good agreement was found except for the enhancement in the photoproduction process. Clear rapidity correlation was observed for particle pairs where either quark flavor or baryon number compensation occurs. The K{sup 0}{sub S}K{sup 0}{sub S} Bose-Einstein correlation measurement gives a result consistent with those from LEP measurements. The {lambda} polarizations were measured to be consistent with zero for HERA I data. (orig.)

Gluon density determination from open charm events at HERA

International Nuclear Information System (INIS)

Woudenberg, R. van; Ould-Saada, F.; Eisenberg, Y.; Glasman, C.; Karshon, U.; Montag, A.; Egli, S.

1992-01-01

We study some prospects of measuring the gluon density in the proton using charm events at HERA for the ep center of mass energy √s = 314 GeV. We invoke the QCD-improved boson-gluon fusion model and find the following cross-section: σ(ep → ecanti cX) ≅ O(0.6 μb). This cross-section would provide O(10 8 ) events/year, for an integrated luminosity of 100 pb -1 . We have investigated two traditional methods for tagging of charm, namely, D *± reconstruction using the process D *± → D 0 π ± → (K -+ π ± )π ± , and dileptonic decays of charmed hadrons (canti c → l + l - X). The inclusive cross-sections after full detector simulation are 10 3 pb and 10 2 pb, respectively. In both cases the background was strongly reduced. By using these events, the gluon distribution in the proton can be measured in the range 10 -3 ≤ x g ≤ 10 -1 . We conclude that an adequate discrimination among the present theoretical parametrizations can be achieved at HERA. (orig.)

Dna2 nuclease-helicase structure, mechanism and regulation by Rpa.

Science.gov (United States)

Zhou, Chun; Pourmal, Sergei; Pavletich, Nikola P

2015-11-02

The Dna2 nuclease-helicase maintains genomic integrity by processing DNA double-strand breaks, Okazaki fragments and stalled replication forks. Dna2 requires ssDNA ends, and is dependent on the ssDNA-binding protein Rpa, which controls cleavage polarity. Here we present the 2.3 Å structure of intact mouse Dna2 bound to a 15-nucleotide ssDNA. The nuclease active site is embedded in a long, narrow tunnel through which the DNA has to thread. The helicase domain is required for DNA binding but not threading. We also present the structure of a flexibly-tethered Dna2-Rpa interaction that recruits Dna2 to Rpa-coated DNA. We establish that a second Dna2-Rpa interaction is mutually exclusive with Rpa-DNA interactions and mediates the displacement of Rpa from ssDNA. This interaction occurs at the nuclease tunnel entrance and the 5' end of the Rpa-DNA complex. Hence, it only displaces Rpa from the 5' but not 3' end, explaining how Rpa regulates cleavage polarity.

Three- and four-jet final states in photoproduction at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2007-08-01

Three- and four-jet final states have been measured in photoproduction at HERA using the ZEUS detector with an integrated luminosity of 121 pb -1 . The results are presented for jets with transverse energy E jet T >6 GeV and pseudorapidity vertical stroke η jet vertical stroke 2 2 and the inelasticity 0.2≤y≤0.85 and in two mass regions defined as 25≤M nj nj ≥50 GeV, where M nj is the invariant mass of the n-jet system. The four-jet photoproduction cross section has been measured for the first time and represents the highest-order process studied at HERA. Both the three- and four-jet cross sections have been compared with leading-logarithmic parton-shower Monte Carlo models, with and without multi-parton interactions. The three-jet cross sections have been compared to an O(αα 2 s ) perturbative QCD calculation. (orig.)

Search for excited leptons in the data of the H1 experiment at the HERA collider

International Nuclear Information System (INIS)

Delerue, N.

2002-09-01

Composite models are one of the possible extensions of the Standard Model. One of their implications, at the energy in the reach of present particles accelerators, would be the excitation of leptons. This PhD. thesis describes the search for excited leptons with the H1 detector installed on the electron-proton collider HERA in Hamburg (Germany). The data used were accumulated between 1994 and 2000 and amount to an integrated luminosity of 120 pb -1 . The analysis of 6 different topologies were done and cover all the branching ratios of desexcitation of excited electron and neutrino. The numbers of candidates found during those analysis is in agreement with the Standard Model expectations. This means that no evidence of excited leptons production was found at HERA. This result was translated in the form of exclusion limits on the coupling of excited leptons (f/A) depending on the mass of the excited lepton. For the first time at HERA we addressed the case were the natural decay width of the excited neutrino is wider than the experimental resolution. For the first time also, a study of the variation of limit depending on the ratio f' / f was carried out. This study lead to the setting of limits independent of this ratio. The limits obtained extend results previously obtained at HERA and also the results of direct searches at LEP. (orig.)

Search for Drell Yan in √(s)=41.6 GeV p-N collisions at HERA-b

International Nuclear Information System (INIS)

Kessler, J.

2007-01-01

In this thesis, the data taken with the HERA-b detector in the running period 2002/2003 is used to measure the cross section of the Drell Yan process q anti q → l + l - , where quark and antiquark annihilate and produce a lepton pair. HERA-b, a fixed target spectrometer, is one of the four experiments at the storage ring HERA at DESY. It uses the proton beam to produce collisions with wire targets of different materials. The main challenge of the thesis is to extract a Drell Yan signal from the dataset without loosing too many events and to find a suitable background simulation which can be subtracted from the kinematical distributions. For this purpose, a Single Track Monte Carlo is generated to calculate event weights, which are applied to the like-sign dataset. This procedure is necessary since the detector acceptance of HERA-b is dependant on the charges of the leptons. After background subtraction and acceptance and luminosity corrections, differential cross sections of the Drell Yan process are plotted, for the first time in the negative x F regime. These are compared to results from E772 and NA50. Also, the dependance of the Drell Yan cross section on the mass number of the target material is calculated. (orig.)

Spin gymnastics at HERA

Energy Technology Data Exchange (ETDEWEB)

Barber, Desmond; Gianfelice-Wendt, Eliana [DESY Laboratory (Germany); Berglund, Mari [DelftChemTech (Netherlands)

2003-07-01

The HERA machine at the DESY laboratory in Hamburg is unique among particle accelerators. This is because it collides electrons (or positrons) with protons at high energies. This allows physicists to study the structure of the proton at very short length scales. And when the accelerator starts running again this month, after an 18-week shutdown, it will be able to explore the proton in even greater detail thanks to a new-found ability to study these high-energy collisions using longitudinally polarized positrons. In the July issue of Physics World Desmond Barber and Eliana Gianfelice-Wendt from the DESY laboratory in Germany and Mari Berglund from DelftChemTech in the Netherlands explain the advances in accelerator science and technology that have made this possible. (U.K.)

Novel benzoxazole inhibitor of dengue virus replication that targets the NS3 helicase.

Science.gov (United States)

Byrd, Chelsea M; Grosenbach, Douglas W; Berhanu, Aklile; Dai, Dongcheng; Jones, Kevin F; Cardwell, Kara B; Schneider, Christine; Yang, Guang; Tyavanagimatt, Shanthakumar; Harver, Chris; Wineinger, Kristin A; Page, Jessica; Stavale, Eric; Stone, Melialani A; Fuller, Kathleen P; Lovejoy, Candace; Leeds, Janet M; Hruby, Dennis E; Jordan, Robert

2013-04-01

Dengue virus (DENV) is the predominant mosquito-borne viral pathogen that infects humans with an estimated 50 to 100 million infections per year worldwide. Over the past 50 years, the incidence of dengue disease has increased dramatically and the virus is now endemic in more than 100 countries. Moreover, multiple serotypes of DENV are now found in the same geographic region, increasing the likelihood of more severe forms of disease. Despite extensive research, there are still no approved vaccines or therapeutics commercially available to treat DENV infection. Here we report the results of a high-throughput screen of a chemical compound library using a whole-virus assay that identified a novel small-molecule inhibitor of DENV, ST-610, that potently and selectively inhibits all four serotypes of DENV replication in vitro. Sequence analysis of drug-resistant virus isolates has identified a single point mutation, A263T, in the NS3 helicase domain that confers resistance to this compound. ST-610 inhibits DENV NS3 helicase RNA unwinding activity in a molecular-beacon-based helicase assay but does not inhibit nucleoside triphosphatase activity based on a malachite green ATPase assay. ST-610 is nonmutagenic, is well tolerated (nontoxic) in mice, and has shown efficacy in a sublethal murine model of DENV infection with the ability to significantly reduce viremia and viral load compared to vehicle controls.

Escherichia coli and Neisseria gonorrhoeae UvrD helicase unwinds G4 DNA structures.

Science.gov (United States)

Shukla, Kaustubh; Thakur, Roshan Singh; Ganguli, Debayan; Rao, Desirazu Narasimha; Nagaraju, Ganesh

2017-10-18

G-quadruplex (G4) secondary structures have been implicated in various biological processes, including gene expression, DNA replication and telomere maintenance. However, unresolved G4 structures impede replication progression which can lead to the generation of DNA double-strand breaks and genome instability. Helicases have been shown to resolve G4 structures to facilitate faithful duplication of the genome. Escherichia coli UvrD (EcUvrD) helicase plays a crucial role in nucleotide excision repair, mismatch repair and in the regulation of homologous recombination. Here, we demonstrate a novel role of E. coli and Neisseria gonorrhoeae UvrD in resolving G4 tetraplexes. EcUvrD and N gonorrhoeae UvrD were proficient in unwinding previously characterized tetramolecular G4 structures. Notably, EcUvrD was equally efficient in resolving tetramolecular and bimolecular G4 DNA that were derived from the potential G4-forming sequences from the genome of E. coli Interestingly, in addition to resolving intermolecular G4 structures, EcUvrD was robust in unwinding intramolecular G4 structures. These data for the first time provide evidence for the role of UvrD in the resolution of G4 structures, which has implications for the in vivo role of UvrD helicase in G4 DNA resolution and genome maintenance. © 2017 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Double-spin asymmetry of J/ψ production in polarized pp-collisions at HERA-N-vector polarized

International Nuclear Information System (INIS)

Teryaev, O.; Tkabladze, A.

1996-01-01

We calculated the color-octet contribution to the double spin asymmetry of J/ψ hadroproduction with nonzero transverse momenta at fixed target energies √ s ≅ 40 GeV. It is shown that color-octet contribution is dominant in the asymmetries. The expected asymmetries and statistical errors in a future option of HERA with longitudinally polarized protons at √ s = 39 GeV (HERA-N polarized) should allow one to distinguish between different parametrizations for polarized gluon distribution in proton

Searches for New Phenomena at the Tevatron and at HERA

Energy Technology Data Exchange (ETDEWEB)

Meyer, Arnd

2006-10-01

Recent results on searches for new physics at Run II of the Tevatron and highlights from HERA are reported. The searches cover many different final states and a wide range of models. All analyses have at this point led to negative results, but some interesting anomalies have been found.

Human RecQL4 helicase plays critical roles in prostate carcinogenesis

DEFF Research Database (Denmark)

Su, Yanrong; Meador, Jarah A; Calaf, Gloria M

2010-01-01

Prostate cancer is the second leading cause of cancer-associated deaths among men in the western countries. Here, we report that human RecQL4 helicase, which is implicated in the pathogenesis of a subset of cancer-prone Rothmund-Thomson syndrome, is highly elevated in metastatic prostate cancer c...

Preservation of beam loss induced quenches, beam lifetime and beam loss measurements with the HERA-p beam-loss-monitor system

International Nuclear Information System (INIS)

Wittenburg, K.

1994-01-01

The beam-loss-monitors (BLMs) in the HERA-Proton-ring (HERAp) must fulfil the following requirements: They have to measure losses sensitive and fast enough to prevent the superconducting magnets from beam loss induced quenching; the dynamic range of the monitors must exceed several decades in order to measure losses during beam lifetimes of hundreds of hours as well as the much stronger losses that may quench superconducting magnets; they have to be insensitive to the synchrotron radiation of the adjacent electron-ring (HERAe); and their radiation hardness must allow a monitor-lifetime of a few years of HERA operation. These requirements are well satisfied by the HERAp-BLM-System. (orig.)

Diffractive charm and jet production at HERA

International Nuclear Information System (INIS)

Savin, Alexander A.

2003-01-01

A new high precision inclusive measurement of the diffractive production of D* ± (2010) mesons in deep inelastic scattering (DIS) in the kinematic region Q 2 >1.5 GeV 2 , 0.02 IP 2 2 , 165 2 , χ IP < 0.03 are presented. Diffractive parton densities extracted using a NLO DGLAP QCD fit are used for comparisons with diffractive DIS and PHP dijet and open charm cross sections at HERA and the Tevatron, thus testing the factorization properties of hard diffraction

Recent results from ep scattering at HERA

International Nuclear Information System (INIS)

Haas, T.

1994-09-01

The HERA experiments, H1 and ZEUS, had their second running period during the summer and fall of 1993 collecting 0.5 pb -1 of data each, a twentyfold increase in statistics over the previous running period. This large increase in statistics together with an improved understanding of the detectors has brought a wide range of physics questions within the reach of the experiments. In this report we give a brief overview of some of the studies performed recently. (orig.)

Structural Studies of RNA Helicases Involved in Eukaryotic Pre-mRNA Splicing, Ribosome Biogenesis, and Translation Initiation

DEFF Research Database (Denmark)

He, Yangzi

and ligates the neighbouring exons to generate mature mRNAs. Prp43 is an RNA helicase of the DEAH/RHA family. In yeast, once mRNAs are released, Prp43 catalyzes the disassembly of spliceosomes. The 18S, 5.8S and 25S rRNAs are transcribed as a single polycistronic transcript—the 35S pre......-rRNA. It is nucleolytically cleaved and chemically modified to generate mature rRNAs, which assemble with ribosomal proteins to form the ribosome. Prp43 is required for the processing of the 18S rRNA. Using X-ray crystallography, I determined a high resolution structure of Prp43 bound to ADP, the first structure of a DEAH....../RHA helicase. It defined the conserved structural features of all DEAH/RHA helicases, and unveiled a novel nucleotide binding site. Additionally a preliminary low resolution structure of a ternary complex comprising Prp43, a non-hydrolyzable ATP analogue, and a single-stranded RNA, was obtained. The ribosome...

The MCM Helicase Motor of the Eukaryotic Replisome.

Science.gov (United States)

Abid Ali, Ferdos; Costa, Alessandro

2016-05-08

The MCM motor of the CMG helicase powers ahead of the eukaryotic replication machinery to unwind DNA, in a process that requires ATP hydrolysis. The reconstitution of DNA replication in vitro has established the succession of events that lead to replication origin activation by the MCM and recent studies have started to elucidate the structural basis of duplex DNA unwinding. Despite the exciting progress, how the MCM translocates on DNA remains a matter of debate. Copyright © 2016. Published by Elsevier Ltd.

Photoproduction of J/{psi} mesons at medium and low elasticities at HERA

Energy Technology Data Exchange (ETDEWEB)

Salvaire, F.

2007-09-15

The first analysis of inelastic J/{psi} meson production in photoproduction (Q{sup 2}<2.5 GeV{sup 2}) of the H1 experiment for the second phase of HERA (HERA II) is presented. The analysis is carried out at low and medium elasticities. The production of heavy quarks (charm, or bottom) is of special interest since the mass of the quarks provides a hard scale for the application of perturbative QCD. The muonic decay channel is used to select the J/{psi} mesons. The data was collected by the H1 detector during the period 2003-2005, and corresponds to an integrated luminosity of 133 pb{sup -1}. However only a subset of this data could be analysed. At the start of HERA II the trigger system was affected by a sizeable background. Then a fault was introduced in the trigger software during the summer 2004 and was only discovered and solved in April 2006. This means that approximately 80 % of the triggered events at medium elasticities and 65 % at low elasticities was lost during this period. Moreover during the first half of 2005 the muon trigger was affected by faulty power supplies. Consequently two good data taking periods are analysed: a first period with an integrated luminosity of 23 pb{sup -1} collected in 2004, and a second period of 60 pb{sup -1} collected during the second half of 2005, which is however strongly affected by the malfunction of the trigger software. In the medium elasticity region the total photoproduction cross section as a function of the photon-proton centre-of-mass energy W and the single differential cross sections as functions of the transverse momentum squared of the J/{psi} meson Pt{sup 2}{sub t,{psi}} and the elasticity z are extracted. The analysis covers the kinematic range 0.3{<=}z{<=}0.9, 60{<=}W{sub {gamma}}{sub p}{<=}240 GeV, and Pt{sup 2}{sub t,{psi}}>1 GeV{sup 2}. The same analysis is performed at low elasticity for the kinematic region 0.05{<=}z{<=}0.45, 120{<=}W{sub {gamma}}{sub p}{<=}260 GeV, and Pt{sup 2}{sub t,{psi}}>1 Ge

Linear vs non-linear QCD evolution: from HERA data to LHC phenomenology

CERN Document Server

Albacete, J L; Quiroga-Arias, P; Rojo, J

2012-01-01

The very precise combined HERA data provides a testing ground in which the relevance of novel QCD regimes, other than the successful linear DGLAP evolution, in small-x inclusive DIS data can be ascertained. We present a study of the dependence of the AAMQS fits, based on the running coupling BK non-linear evolution equations (rcBK), on the fitted dataset. This allows for the identification of the kinematical region where rcBK accurately describes the data, and thus for the determination of its applicability boundary. We compare the rcBK results with NNLO DGLAP fits, obtained with the NNPDF methodology with analogous kinematical cuts. Further, we explore the impact on LHC phenomenology of applying stringent kinematical cuts to the low-x HERA data in a DGLAP fit.

Very energetic photons at HERA

International Nuclear Information System (INIS)

Bawa, A.C.; Krawczyk, M.

1991-01-01

We show that every energetic photons in the backward direction can be produced in deep inelastic Compton scattering at HERA. Assuming a fixed energy of 9 GeV for the initial photons and 820 GeV for the protons a high rate is found for the production of final photons with a transverse momentum equal to 5 GeV/c and energy between 40 GeV and 300 GeV. These energetic photons arise mainly from the scattering of the soft gluonic constituents of the initial photon with quarks from the proton. They are produced in the backward direction in coincidence with a photon beam jet of energy ∝ 9 GeV in the forward direction. (orig.)

The data acquisition system for the HERA H1 experiment

International Nuclear Information System (INIS)

Haynes, W.J.

1990-06-01

The HERA ep collider will set new challenges for the acquisition of data from large particle physics experiments. Short bunch-crossing times combined with high data rates imply sophisticated designs based on current technology. This paper describes how a multi-microprocessor system is being used at the H1 experiment. (author)

Saturation and forward jets at HERA

International Nuclear Information System (INIS)

Marquet, C.; Peschanski, R.; Royon, C.

2004-01-01

We analyse forward-jet production at HERA in the framework of the Golec-Biernat and Wusthoff saturation models. We obtain a good description of the forward-jet cross-sections measured by the H1 and ZEUS Collaborations in the two-hard-scale region (k T∼ Q >> Λ QCD ) with two different parametrizations with either significant or weak saturation effects. The weak saturation parametrization gives a scale compatible with the one found for the proton structure function F2. We argue that Mueller-Navelet jets at the Tevatron and the LHC could help distinguishing between both options

Search for Excited Neutrinos at HERA

CERN Document Server

Adloff, C.; Andrieu, B.; Anthonis, T.; Arkadov, V.; Astvatsatourov, A.; Babaev, A.; Bahr, J.; Baranov, P.; Barrelet, E.; Bartel, W.; Bate, P.; Becker, J.; Beglarian, A.; Behnke, O.; Beier, C.; Belousov, A.; Benisch, T.; Berger, C.; Berndt, T.; Bizot, J.C.; Boehme, J.; Boudry, V.; Braunschweig, W.; Brisson, V.; Broker, H.B.; Brown, D.P.; Bruckner, W.; Bruncko, D.; Burger, J.; Busser, F.W.; Bunyatyan, A.; Burrage, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Cao, Jun; Caron, S.; Cassol-Brunner, F.; Clarke, D.; Clerbaux, B.; Collard, C.; Contreras, J.G.; Coppens, Y.R.; Coughlan, J.A.; Cousinou, M.C.; Cox, B.E.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Dau, W.D.; Daum, K.; Davidsson, M.; Delcourt, B.; Delerue, N.; Demirchyan, R.; De Roeck, A.; De Wolf, E.A.; Diaconu, C.; Dingfelder, J.; Dixon, P.; Dodonov, V.; Dowell, J.D.; Droutskoi, A.; Dubak, A.; Duprel, C.; Eckerlin, Guenter; Eckstein, D.; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Eisenhandler, E.; Ellerbrock, M.; Elsen, E.; Erdmann, M.; Erdmann, W.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Felst, R.; Ferencei, J.; Ferron, S.; Fleischer, M.; Fleming, Y.H.; Flugge, G.; Fomenko, A.; Foresti, I.; Formanek, J.; Franke, G.; Gabathuler, E.; Gabathuler, K.; Garvey, J.; Gassner, J.; Gayler, Joerg; Gerhards, R.; Gerlich, C.; Ghazaryan, Samvel; Goerlich, L.; Gogitidze, N.; Goldberg, M.; Grab, C.; Grassler, H.; Greenshaw, T.; Grindhammer, Guenter; Hadig, T.; Haidt, D.; Hajduk, L.; Haller, J.; Haynes, W.J.; Heinemann, B.; Heinzelmann, G.; Henderson, R.C.W.; Hengstmann, S.; Henschel, H.; Heremans, R.; Herrera, G.; Herynek, I.; Hildebrandt, M.; Hilgers, M.; Hiller, K.H.; Hladky, J.; Hoting, P.; Hoffmann, D.; Horisberger, R.; Hurling, S.; Ibbotson, M.; Issever, C.; Jacquet, M.; Jaffre, M.; Janauschek, L.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, C.; Johnson, D.P.; Jones, M.A.S.; Jung, H.; Kant, D.; Kapichine, M.; Karlsson, M.; Karschnick, O.; Keil, F.; Keller, N.; Kennedy, J.; Kenyon, I.R.; Kermiche, S.; Kiesling, Christian M.; Kjellberg, P.; Klein, M.; Kleinwort, C.; Kluge, T.; Knies, G.; Koblitz, B.; Kolya, S.D.; Korbel, V.; Kostka, P.; Kotelnikov, S.K.; Koutouev, R.; Koutov, A.; Krehbiel, H.; Kroseberg, J.; Kruger, K.; Kupper, A.; Kuhr, T.; Kurca, T.; Lahmann, R.; Lamb, D.; Landon, M.P.J.; Lange, W.; Lastovicka, T.; Laycock, P.; Lebailly, E.; Lebedev, A.; Leissner, B.; Lemrani, R.; Lendermann, V.; Levonian, S.; Lindstroem, M.; List, B.; Lobodzinska, E.; Lobodzinski, B.; Loginov, A.; Loktionova, N.; Lubimov, V.; Luders, S.; Luke, D.; Lytkin, L.; Mahlke-Kruger, H.; Malden, N.; Malinovski, E.; Malinovski, I.; Maracek, R.; Marage, P.; Marks, J.; Marshall, R.; Martyn, H.U.; Martyniak, J.; Maxfield, S.J.; Meer, D.; Mehta, A.; Meier, K.; Meyer, A.B.; Meyer, H.; Meyer, J.; Meyer, P.O.; Mikocki, S.; Milstead, D.; Mkrtchyan, T.; Mohr, R.; Mohrdieck, S.; Mondragon, M.N.; Moreau, F.; Morozov, A.; Morris, J.V.; Muller, K.; Murin, P.; Nagovizin, V.; Naroska, B.; Naumann, J.; Naumann, T.; Nellen, G.; Newman, Paul R.; Nicholls, T.C.; Niebergall, F.; Niebuhr, C.; Nix, O.; Nowak, G.; Olsson, J.E.; Ozerov, D.; Panassik, V.; Pascaud, C.; Patel, G.D.; Peez, M.; Perez, E.; Phillips, J.P.; Pitzl, D.; Poschl, R.; Potachnikova, I.; Povh, B.; Rabbertz, K.; Radel, G.; Rauschenberger, J.; Reimer, P.; Reisert, B.; Reyna, D.; Risler, C.; Rizvi, E.; Robmann, P.; Roosen, R.; Rostovtsev, A.; Rusakov, S.; Rybicki, K.; Sankey, D.P.C.; Scheins, J.; Schilling, F.P.; Schleper, P.; Schmidt, D.; Schmidt, S.; Schmitt, S.; Schneider, M.; Schoeffel, L.; Schoning, A.; Schorner, T.; Schroder, V.; Schultz-Coulon, H.C.; Schwanenberger, C.; Sedlak, K.; Sefkow, F.; Chekelian, V.; Sheviakov, I.; Shtarkov, L.N.; Sirois, Y.; Sloan, T.; Smirnov, P.; Soloviev, Y.; South, D.; Spaskov, V.; Specka, Arnd E.; Spitzer, H.; Stamen, R.; Stella, B.; Stiewe, J.; Straumann, U.; Swart, M.; Tasevsky, M.; Chernyshov, V.; Chetchelnitski, S.; Thompson, Graham; Thompson, P.D.; Tobien, N.; Traynor, D.; Truoel, Peter; Tsipolitis, G.; Tsurin, I.; Turnau, J.; Turney, J.E.; Tzamariudaki, E.; Udluft, S.; Urban, Marcel; Usik, A.; Valkar, S.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Vassiliev, S.; Vazdik, Y.; Vichnevski, A.; Wacker, K.; Wallny, R.; Waugh, B.; Weber, G.; Weber, M.; Wegener, D.; Werner, C.; Werner, M.; Werner, N.; White, G.; Wiesand, S.; Wilksen, T.; Winde, M.; Winter, G.G.; Wissing, C.; Wobisch, M.; Woehrling, E.E.; Wunsch, E.; Wyatt, A.C.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhokin, A.; Zomer, F.; Zsembery, J.; zur Nedden, M.

2002-01-01

We present a search for excited neutrinos using e^-p data taken by the H1 experiment at HERA at a center-of-mass energy of 318 GeV with an integrated luminosity of 15 pb-1. No evidence for excited neutrino production is found. Mass dependent exclusion limits are determined for the ratio of the coupling to the compositeness scale, f/Lambda, independently of the relative couplings to the SU(2) and U(1) gauge bosons. These limits extend the excluded region to higher masses than has been possible in previous searches at other colliders.

Prompt photons in photoproduction at HERA

International Nuclear Information System (INIS)

Aaron, F.D.; Alexa, C.; Rotaru, M.; Stoicea, G.; Zus, R.; Aldaya Martin, M.; Antunovic, B.; Bartel, W.; Brandt, G.; Campbell, A.J.; Cholewa, A.; Deak, M.; Boer, Y. de; Eckerlin, G.; Elsen, E.; Felst, R.; Fischer, D.J.; Fleischer, M.; Gayler, J.; Glazov, A.; Gouzevitch, M.; Grell, B.R.; Haidt, D.; Helebrant, C.; Jung, H.; Katzy, J.; Kleinwort, C.; Knutsson, A.; Kraemer, M.; Krastev, K.; Kutak, K.; Levonian, S.; Lipka, K.; List, J.; Marti, Ll.; Meyer, A.B.; Meyer, H.; Meyer, J.; Michels, V.; Niebuhr, C.; Nikiforov, A.; Nozicka, M.; Olsson, J.E.; Panagoulias, I.; Papadopoulou, T.; Pitzl, D.; Placakyte, R.; Radescu, V.; Rurikova, Z.; Schmitt, S.; Sefkow, F.; Staykova, Z.; Steder, M.; Vargas Trevino, A.; Vinokurova, S.; Driesch, M. von den; Wissing, C.; Wuensch, E.; Andreev, V.; Belousov, A.; Eliseev, A.; Fomenko, A.; Gogitidze, N.; Lebedev, A.; Loktionova, N.; Malinovski, E.; Rusakov, S.; Shtarkov, L.N.; Soloviev, Y.; Vazdik, Y.; Backovic, S.; Dubak, A.; Lastovicka-Medin, G.; Picuric, I.; Raicevic, N.; Baghdasaryan, A.; Ghazaryan, S.; Volchinski, V.; Zohrabyan, H.; Barrelet, E.; Begzsuren, K.; Ravdandorj, T.; Tseepeldorj, B.; Bizot, J.C.; Brisson, V.; Delcourt, B.; Jacquet, M.; Li, G.; Pascaud, C.; Tran, T.H.; Zhang, Z.; Zomer, F.; Boudry, V.; Moreau, F.; Specka, A.; Bozovic-Jelisavcic, I.; Mudrinic, M.; Pandurovic, M.; Smiljanic, I.; Bracinik, J.; Kenyon, I.R.; Newman, P.R.; Shaw-West, R.N.; Thompson, P.D.; Brinkmann, M.; Habib, S.; List, B.; Pokorny, B.; Toll, T.; Bruncko, D.; Cerny, V.; Ferencei, J.; Murin, P.; Tomasz, F.; Bunyatyan, A.; Buschhorn, G.; Chekelian, V.; Dossanov, A.; Grindhammer, G.; Kiesling, C.; Kogler, R.; Liptaj, A.; Olivier, B.; Raspiareza, A.; Shushkevich, S.; Bystritskaya, L.; Efremenko, V.; Fedotov, A.; Kropivnitskaya, A.; Lubimov, V.; Ozerov, D.; Petrukhin, A.; Rostovtsev, A.; Zhokin, A.; Cantun Avila, K.B.; Contreras, J.G.; Ruiz Tabasco, J.E.; Cerny, K.; Pejchal, O.; Polifka, R.; Salek, D.; Valkarova, A.; Zacek, J.; Coughlan, J.A.; Morris, J.V.; Sankey, D.P.C.; Cozzika, G.; Feltesse, J.; Perez, E.; Schoeffel, L.; Cvach, J.; Reimer, P.; Zalesak, J.; Dainton, J.B.; Gabathuler, E.; Greenshaw, T.; Klein, M.; Kluge, T.; Kretzschmar, J.; Laycock, P.; Maxfield, S.J.; Mehta, A.; Patel, G.D.; Rahmat, A.J.; Daum, K.; Meyer, H.; Del Degan, M.; Grab, C.; Leibenguth, G.; Sauter, M.; Zimmermann, T.; Delvax, J.; Wolf, E.A. de; Favart, L.; Hreus, T.; Janssen, X.; Marage, P.; Mozer, M.U.; Roland, B.; Roosen, R.; Sunar, D.; Sykora, T.; Mechelen, P. van; Diaconu, C.; Hoffmann, D.; Sauvan, E.; Trinh, T.N.; Vallee, C.; Dodonov, V.; Povh, B.; Egli, S.; Hildebrandt, M.; Horisberger, R.; Falkiewicz, A.; Goerlich, L.; Mikocki, S.; Milcewicz-Mika, I.; Nowak, G.; Sopicki, P.; Turnau, J.; Glushkov, I.; Henschel, H.; Hiller, K.H.; Kostka, P.; Lange, W.; Naumann, T.; Piec, S.; Henderson, R.C.W.; Sloan, T.; Hennekemper, E.; Herbst, M.; Jung, A.W.; Krueger, K.; Lendermann, V.; Schultz-Coulon, H.C.; Urban, K.; Herrera, G.; Lopez-Fernandez, R.; Joensson, L.; Osman, S.; Kapichine, M.; Makankine, A.; Morozov, A.; Nikitin, D.; Palichik, V.; Spaskov, V.; Tchoulakov, V.; Landon, M.P.J.; Rizvi, E.; Thompson, G.; Traynor, D.; Martyn, H.U.; Mueller, K.; Nowak, K.; Robmann, P.; Straumann, U.; Truoel, P.; Schoening, A.; South, D.; Wegener, D.; Stella, B.; Tsakov, I.

2010-01-01

The production of prompt photons is measured in the photoproduction regime of electron-proton scattering at HERA. The analysis is based on a data sample corresponding to a total integrated luminosity of 340 pb -1 collected by the H1 experiment. Cross sections are measured for photons with transverse momentum and pseudorapidity in the range 6 T γ γ γ and x p carried by the partons entering the hard scattering process. The correlation between the photon and the jet is also studied. The results are compared with QCD predictions based on the collinear and on the k T factorization approaches. (orig.) 7

Search for stop production in R-parity-violating supersymmetry at HERA

Energy Technology Data Exchange (ETDEWEB)

Chekanov, S.; Derrick, M.; Magill, S. [Argonne National Laboratory, IL (US)] (and others)

2006-11-15

A search for stop production in R-parity-violating supersymmetry has been performed in e{sup +}p interactions with the ZEUS detector at HERA, using an integrated luminosity of 65 pb{sup -1}. At HERA, the R-parity-violating coupling {lambda}' allows resonant squark production, e{sup +}d{yields}q. Since the lowest-mass squark state in most supersymmetry models is the light stop, t, this search concentrated on production of t, followed either by a direct R-parity-violating decay, or by the gauge decay to b{sub {chi}{sub 1}}{sup +}. No evidence for stop production was found and limits were set on {lambda}{sub 131}' as a function of the stop mass in the framework of the Minimal Supersymmetric Standard Model. The results have also been interpreted in terms of constraints on the parameters of the minimal Supergravity model. (orig.)

Photoproduction at collider energies: from RHIC and HERA to the LHC

CERN Document Server

Baltz, A; Brodsky, S J; D'Enterria, D G; Dreyer, U; Engel, R; Frankfurt, L; Gorbunov, Y; Guzey, V; Hamilton, A; Klasen, M; Klein, S R; Kowalski, H; Levonian, S; Lourenço, C; Machado, M V T; Nachtmann, O; Nagy, Z; Nystrand, J; Piotrzkowski, K; Ramalhete, P; Savin, A; Scapparone, E; Schicker, R; Silvermyr, D; Strikman, M I; Valkárová, A; Vogt, R; Yilmaz, M; Enterria, David d'

2007-01-01

We present the mini-proceedings of the workshop on "Photoproduction at collider energies: from RHIC and HERA to the LHC" held at the European Centre for Theoretical Studies in Nuclear Physics and Related Areas (ECT*, Trento) from January 15 to 19, 2007. The workshop gathered both theorists and experimentalists to discuss the current status of investigations of high-energy photon-induced processes at different colliders (HERA, RHIC, and Tevatron) as well as preparations for extension of these studies at the LHC. The main physics topics covered were: (i) small-$x$ QCD in photoproduction studies with protons and in electromagnetic (aka. ultraperipheral) nucleus-nucleus collisions, (ii) hard diffraction physics at hadron colliders, and (iii) photon-photon collisions at very high energies: electroweak and beyond the Standard Model processes. These mini-proceedings consist of an introduction and short summaries of the talks presented at the meeting.

Total cross sections for heavy flavour production at HERA

CERN Document Server

Frixione, Stefano; Nason, P; Ridolfi, G; Frixione, S; Mangano, M L; Nason, P; Ridolfi, G

1995-01-01

We compute total cross sections for charm and bottom photoproduction at HERA energies, and discuss the relevant theoretical uncertainties. In particular we discuss the problems arising from the small-x region, the uncertainties in the gluon parton density, and the uncertainties in the hadronic component of the cross section. Total electroproduction cross sections, calculated in the Weizs\\"acker-Williams approximation, are also given.

Mycobacterium smegmatis SftH exemplifies a distinctive clade of superfamily II DNA-dependent ATPases with 3' to 5' translocase and helicase activities.

Science.gov (United States)

Yakovleva, Lyudmila; Shuman, Stewart

2012-08-01

Bacterial DNA helicases are nucleic acid-dependent NTPases that play important roles in DNA replication, recombination and repair. We are interested in the DNA helicases of Mycobacteria, a genus of the phylum Actinobacteria, which includes the human pathogen Mycobacterium tuberculosis and its avirulent relative Mycobacterium smegmatis. Here, we identify and characterize M. smegmatis SftH, a superfamily II helicase with a distinctive domain structure, comprising an N-terminal NTPase domain and a C-terminal DUF1998 domain (containing a putative tetracysteine metal-binding motif). We show that SftH is a monomeric DNA-dependent ATPase/dATPase that translocates 3' to 5' on single-stranded DNA and has 3' to 5' helicase activity. SftH homologs are found in bacteria representing 12 different phyla, being especially prevalent in Actinobacteria (including M. tuberculosis). SftH homologs are evident in more than 30 genera of Archaea. Among eukarya, SftH homologs are present in plants and fungi.

Molecular Dynamics of the ZIKA Virus NS3 Helicase

Science.gov (United States)

Raubenolt, Bryan; Rick, Steven; The Rick Group Team

The recent outbreaks of the ZIKA virus (ZIKV) and its connection to microcephaly in newborns has raised its awareness as a global threat and many scientific research efforts are currently underway in attempt to create a vaccine. Molecular Dynamics is a powerful method of investigating the physical behavior of protein complexes. ZIKV is comprised of 3 structural and 7 nonstructural proteins. The NS3 helicase protein appears to play a significant role in the replication complex and its inhibition could be a crucial source of antiviral drug design. This research primarily focuses on studying the structural dynamics, over the course of few hundred nanoseconds, of NS3 helicase in the free state, as well as in complex form with human ssRNA, ATP, and an analogue of GTP. RMSD and RMSF plots of each simulation will provide details on the forces involved in the overall stability of the active and inactive states. Furthermore, free energy calculations on a per residue level will reveal the most interactive residues between states and ultimately the primary driving force behind these interactions. Together these analyses will provide highly relevant information on the binding surface chemistry and thus serve as the basis for potential drug design.

Distinct functions of human RecQ helicases during DNA replication

Czech Academy of Sciences Publication Activity Database

Urban, Václav; Dobrovolná, Jana; Janščák, Pavel

2017-01-01

Roč. 225, červen (2017), s. 20-26 ISSN 0301-4622 R&D Projects: GA ČR(CZ) GA14-05743S; GA MŠk LH14037 Institutional support: RVO:68378050 Keywords : DNA replication * Replication stress * RecQ helicases * Genomic instability * Cancer Subject RIV: EB - Genetics ; Molecular Biology OBOR OECD: Biochemistry and molecular biology Impact factor: 2.402, year: 2016

Diffractive open charm production at DESY HERA. Experiment versus two-gluon exchange model

Energy Technology Data Exchange (ETDEWEB)

Baranov, S.P. [P.N. Lebedev Inst. of Physics, Moscow (Russian Federation)

2010-03-15

Diffractive production of D{sup *} mesons at HERA conditions is considered in the framework of collinear two-gluon exchange model. Theoretical results are compared with recent experimental data. (orig.)

Search for Drell Yan in {radical}(s)=41.6 GeV p-N collisions at HERA-b

Energy Technology Data Exchange (ETDEWEB)

Kessler, J.

2007-10-31

In this thesis, the data taken with the HERA-b detector in the running period 2002/2003 is used to measure the cross section of the Drell Yan process q anti q {yields} l{sup +}l{sup -}, where quark and antiquark annihilate and produce a lepton pair. HERA-b, a fixed target spectrometer, is one of the four experiments at the storage ring HERA at DESY. It uses the proton beam to produce collisions with wire targets of different materials. The main challenge of the thesis is to extract a Drell Yan signal from the dataset without loosing too many events and to find a suitable background simulation which can be subtracted from the kinematical distributions. For this purpose, a Single Track Monte Carlo is generated to calculate event weights, which are applied to the like-sign dataset. This procedure is necessary since the detector acceptance of HERA-b is dependant on the charges of the leptons. After background subtraction and acceptance and luminosity corrections, differential cross sections of the Drell Yan process are plotted, for the first time in the negative x{sub F} regime. These are compared to results from E772 and NA50. Also, the dependance of the Drell Yan cross section on the mass number of the target material is calculated. (orig.)

HERA Broadband Feed Design for Low-Frequency Radio Astronomy

Science.gov (United States)

Garza, Sierra; Trung, Vincent; Ewall-Wice, Aaron Michael; Li, Jianshu; Hewitt, Jacqueline; Riley, Daniel; Bradley, Richard F.; Makhija, Krishna

2018-01-01

As part of the Hydrogen Epoch of Reionization Array (HERA) project, we are designing a broadband low-frequency radio feed to extend the bandwidth from 100-200 MHz to 50-220 MHz. By extending the lower-limit to 50 MHz, we hope to detect the signatures of the first black holes heating the hydrogen gas in the intergalactic medium.The isolation of a very faint signal from vastly brighter foregrounds sets strict requirements on antenna spectral smoothness, polarization purity, forward gain, and internal reflections. We are currently working to meet these requirements with a broad-band sinuous antenna feed suspended over the 14-m parabolic HERA dish, using a combination of measurements and simulations to verify the performance of our design.A sinuous feed has been designed and simulated with Computer Simulation Technology (CST) software. We will present the construction of a prototype sinuous antenna and measurements of its reflection coefficient, S11, including laboratory characterization of baluns. Our measurements agree well with the CST simulations of the antenna’s performance, giving us confidence in our ability to model the feed and ensure that it meets the requirements of a 21cm cosmology measurement.

The helicase and ATPase activities of RECQL4 are compromised by mutations reported in three human patients

DEFF Research Database (Denmark)

Jensen, Martin Borch; Dunn, Christopher A; Keijzers, Guido

2012-01-01

RECQL4 is one of five members of the human RecQ helicase family, and is implicated in three syndromes displaying accelerating aging, developmental abnormalities and a predisposition to cancer. In this study, we purified three variants of RECQL4 carrying previously reported patient mutations....... These three mutant proteins were analyzed for the known biochemical activities of RECQL4: DNA binding, unwinding of duplex DNA, ATP hydrolysis and annealing of simplex DNA. Further, the mutant proteins were evaluated for stability and recruitment to sites of laser-induced DNA damage. One mutant was helicase...

Short-range and long-range correlations in DIS at HERA

International Nuclear Information System (INIS)

Chekanov, S. V.; Zawiejski, L.

1999-01-01

Correlations in deep-inelastic scattering (DIS) at HERA are investigated in order to test perturbative QCD and quark fragmentation universality. Two-particle correlations at small angular separations are measured in the Breit frame and compared to e + e - collisions. Also presented are the correlations between the current and target regions of the Breit frame

Human events reference for ATHEANA (HERA) database description and preliminary user's manual

International Nuclear Information System (INIS)

Auflick, J.L.; Hahn, H.A.; Pond, D.J.

1998-01-01

The Technique for Human Error Analysis (ATHEANA) is a newly developed human reliability analysis (HRA) methodology that aims to facilitate better representation and integration of human performance into probabilistic risk assessment (PRA) modeling and quantification by analyzing risk-significant operating experience in the context of existing behavioral science models. The fundamental premise of ATHEANA is that error-forcing contexts (EFCs), which refer to combinations of equipment/material conditions and performance shaping factors (PSFs), set up or create the conditions under which unsafe actions (UAs) can occur. Because ATHEANA relies heavily on the analysis of operational events that have already occurred as a mechanism for generating creative thinking about possible EFCs, a database, called the Human Events Reference for ATHEANA (HERA), has been developed to support the methodology. This report documents the initial development efforts for HERA

Human Events Reference for ATHEANA (HERA) Database Description and Preliminary User's Manual

International Nuclear Information System (INIS)

Auflick, J.L.

1999-01-01

The Technique for Human Error Analysis (ATHEANA) is a newly developed human reliability analysis (HRA) methodology that aims to facilitate better representation and integration of human performance into probabilistic risk assessment (PRA) modeling and quantification by analyzing risk-significant operating experience in the context of existing behavioral science models. The fundamental premise of ATHEANA is that error forcing contexts (EFCs), which refer to combinations of equipment/material conditions and performance shaping factors (PSFs), set up or create the conditions under which unsafe actions (UAs) can occur. Because ATHEANA relies heavily on the analysis of operational events that have already occurred as a mechanism for generating creative thinking about possible EFCs, a database (db) of analytical operational events, called the Human Events Reference for ATHEANA (HERA), has been developed to support the methodology. This report documents the initial development efforts for HERA

A Search for Excited Neutrinos in e-p Collisions at HERA

CERN Document Server

Aaron, F.D.; Andreev, V.; Antunovic, B.; Aplin, S.; Asmone, A.; Astvatsatourov, A.; Backovic, S.; Baghdasaryan, A.; Baranov, P.; Barrelet, E.; Bartel, W.; Baudrand, S.; Beckingham, M.; Begzsuren, K.; Behnke, O.; Belousov, A.; Berger, N.; Bizot, J.C.; Boenig, M.O.; Boudry, V.; Bozovic-Jelisavcic, I.; Bracinik, J.; Brandt, G.; Brinkmann, M.; Brisson, V.; Bruncko, D.; Bunyatyan, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Cantun Avila, K.B.; Cassol-Brunner, F.; Cerny, K.; Cerny, V.; Chekelian, V.; Cholewa, A.; Contreras, J.G.; Coughlan, J.A.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Daum, K.; Deak, M.; de Boer, Y.; Delcourt, B.; Del Degan, M.; Delvax, J.; De Roeck, A.; De Wolf, E.A.; Diaconu, C.; Dodonov, V.; Dossanov, A.; Dubak, A.; Eckerlin, G.; Efremenko, V.; Egli, S.; Eisele, F.; Eliseev, A.; Elsen, E.; Essenov, S.; Falkiewicz, A.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Felst, R.; Feltesse, J.; Ferencei, J.; Finke, L.; Fleischer, M.; Fomenko, A.; Franke, G.; Frisson, T.; Gabathuler, E.; Gayler, J.; Ghazaryan, S.; Glazov, A.; Glushkov, I.; Goerlich, L.; Goettlich, M.; Gogitidze, N.; Gouzevitch, M.; Grab, C.; Greenshaw, T.; Grell, B.R.; Grindhammer, G.; Habib, S.; Haidt, D.; Hansson, M.; Helebrant, C.; Henderson, R.C.W.; Henschel, H.; Herrera, G.; Hildebrandt, M.; Hiller, K.H.; Hoffmann, D.; Horisberger, R.; Hovhannisyan, A.; Hreus, T.; Jacquet, M.; Janssen, M.E.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, D.P.; Jung, A.W.; Jung, H.; Kapichine, M.; Katzy, J.; Kenyon, I.R.; Kiesling, C.; Klein, M.; Kleinwort, C.; Klimkovich, T.; Kluge, T.; Knutsson, A.; Kogler, R.; Korbel, V.; Kostka, P.; Kraemer, M.; Krastev, K.; Kretzschmar, J.; Kropivnitskaya, A.; Kruger, K.; Kutak, K.; Landon, M.P.J.; Lange, W.; Lastovicka-Medin, G.; Laycock, P.; Lebedev, A.; Leibenguth, G.; Lendermann, V.; Levonian, S.; Li, G.; Lipka, K.; Liptaj, A.; List, B.; List, J.; Loktionova, N.; Lopez-Fernandez, R.; Lubimov, V.; Lucaci-Timoce, A.I.; Lytkin, L.; Makankine, A.; Malinovski, E.; Marage, P.; Marti, Ll.; Martyn, H.U.; Maxfield, S.J.; Mehta, A.; Meier, K.; Meyer, A.B.; Meyer, H.; Meyer, H.; Meyer, J.; Michels, V.; Mikocki, S.; Milcewicz-Mika, I.; Moreau, F.; Morozov, A.; Morris, J.V.; Mozer, M.U.; Mudrinic, M.; Muller, K.; Murin, P.; Nankov, K.; Naroska, B.; Naumann, Th.; Newman, P.R.; Niebuhr, C.; Nikiforov, A.; Nowak, G.; Nowak, K.; Nozicka, M.; Olivier, B.; Olsson, J.E.; Osman, S.; Ozerov, D.; Palichik, V.; Panagoulias, I.; Pandurovic, M.; Papadopoulou, Th.; Pascaud, C.; Patel, G.D.; Pejchal, O.; Peng, H.; Perez, E.; Petrukhin, A.; Picuric, I.; Piec, S.; Pitzl, D.; Placakyte, R.; Polifka, R.; Povh, B.; Preda, T.; Radescu, V.; Rahmat, A.J.; Raicevic, N.; Raspiareza, A.; Ravdandorj, T.; Reimer, P.; Risler, C.; Rizvi, E.; Robmann, P.; Roland, B.; Roosen, R.; Rostovtsev, A.; Rotaru, M.; Ruiz Tabasco, J.E.; Rurikova, Z.; Rusakov, S.; Salek, D.; Salvaire, F.; Sankey, D.P.C.; Sauter, M.; Sauvan, E.; Schmidt, S.; Schmitt, S.; Schmitz, C.; Schoeffel, L.; Schoning, A.; Schultz-Coulon, H.C.; Sefkow, F.; Shaw-West, R.N.; Sheviakov, I.; Shtarkov, L.N.; Sloan, T.; Smiljanic, I.; Smirnov, P.; Soloviev, Y.; South, D.; Spaskov, V.; Specka, A.; Staykova, Z.; Steder, M.; Stella, B.; Straumann, U.; Sunar, D.; Sykora, T.; Tchoulakov, V.; Thompson, G.; Thompson, P.D.; Toll, T.; Tomasz, F.; Tran, T.H.; Traynor, D.; Trinh, T.N.; Truol, P.; Tsakov, I.; Tseepeldorj, B.; Tsurin, I.; Turnau, J.; Tzamariudaki, E.; Urban, K.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Vargas Trevino, A.; Vazdik, Y.; Vinokurova, S.; Volchinski, V.; Wegener, D.; Wessels, M.; Wissing, Ch.; Wolf, R.; Wunsch, E.; Yeganov, V.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhelezov, A.; Zhokin, A.; Zhu, Y.C.; Zimmermann, T.; Zohrabyan, H.; Zomer, F.

2008-01-01

A search for excited neutrinos is performed using the full $e^{-}p$ data sample collected by the H1 experiment at HERA at a centre-of-mass energy of 319 GeV, corresponding to a total luminosity of 184 pb$^{-1}$.The electroweak decays of excited neutrinos ${\

Single jet photoproduction at HERA in next-to-leading order QCD

International Nuclear Information System (INIS)

Kramer, G.; Salesch, S.G.

1993-01-01

We present results for next- to-leading order calculations of single jet inclusive cross sections by resolved photons in ep-collisions at HERA. The dependence on the jet recombination cut and on the choice of the renormalization and factorization scales is studied in detail. (orig.). 5 figs

Angular correlations in three-jet events in ep collisions at HERA

NARCIS (Netherlands)

Abramowicz, H.; Abt, I.; Adamczyk, L.; Adamus, M.; Aggarwal, R.; Antonelli, S.; Antonioli, P.; Antonov, A.; Arneodo, M.; Aushev, V.; Aushev, Y.; Bachynska, O.; Bamberger, A.; Barakbaev, A. N.; Barbagli, G.; Bari, G.; Barreiro, F.; Bartosik, N.; Bartsch, D.; Basile, M.; Behnke, O.; Behr, J.; Behrens, U.; Bellagamba, L.; Bertolin, A.; Bhadra, S.; Bindi, M.; Blohm, C.; Bokhonov, V.; Bold, T.; Bondarenko, K.; Boos, E. G.; Borras, K.; Boscherini, D.; Brock, I.; Brownson, E.; Brugnera, R.; Bruemmer, N.; Bruni, A.; Bruni, G.; Brzozowska, B.; Bussey, P. J.; Bylsma, B.; Caldwell, A.; Capua, M.; Carlin, R.; Catterall, C. D.; Chekanov, S.; Chwastowski, J.; Pellegrino, A.

2012-01-01

Three-jet production in deep inelastic ep scattering and photoproduction was investigated with the ZEUS detector at HERA using an integrated luminosity of up to 127 pb(-1). Measurements of differential cross sections are presented as functions of angular correlations between the three jets in the

Three- and four-jet final states in photoproduction at HERA

Energy Technology Data Exchange (ETDEWEB)

Chekanov, S.; Derrick, M.; Magill, S. [Argonne National Laboratory, Argonne, IL (US)] (and others)

2007-08-15

Three- and four-jet final states have been measured in photoproduction at HERA using the ZEUS detector with an integrated luminosity of 121 pb{sup -1}. The results are presented for jets with transverse energy E{sup jet}{sub T}>6 GeV and pseudorapidity vertical stroke {eta}{sup jet} vertical stroke <2.4, in the kinematic region given by the virtuality of the photon Q{sup 2}<1 GeV{sup 2} and the inelasticity 0.2{<=}y{<=}0.85 and in two mass regions defined as 25{<=}M{sub nj}<50 GeV and M{sub nj}{>=}50 GeV, where M{sub nj} is the invariant mass of the n-jet system. The four-jet photoproduction cross section has been measured for the first time and represents the highest-order process studied at HERA. Both the three- and four-jet cross sections have been compared with leading-logarithmic parton-shower Monte Carlo models, with and without multi-parton interactions. The three-jet cross sections have been compared to an O({alpha}{alpha}{sup 2}{sub s}) perturbative QCD calculation. (orig.)

On the determination of double diffraction dissociation cross section at HERA

International Nuclear Information System (INIS)

Holtmann, H.; Nikolaev, N.N.; Speth, J.; Zakharov, B.G.

1996-01-01

The excitation of the proton into undetected multiparticle states (double diffraction dissociation) is an important background to single diffractive deep-inelastic processes ep→e'p'ρ 0 , e'p'J/Ψ, e'p'X at HERA. We present estimates of the admixture of the double diffraction dissociation events in all diffractive events. We find that in the J/Ψ photoproduction, electroproduction of the ρ 0 at large Q 2 and diffraction dissociation of real and virtual photons into high mass states X the contamination of the double diffraction dissociation can be as large as ∼30%, thus affecting substantially the experimental tests of the pomeron exchange in deep inelastic scattering at HERA. We discuss a possibility of tagging the double diffraction dissociation by neutrons observed in the forward neutron calorimeter. We present evaluations of the spectra of neutrons and efficiency of neutron tagging based on the experimental data for diffractive processes in the proton-proton collisions. (orig.)

New storage ring at DESY's. HERA's realm in the shades. Pt. 2

International Nuclear Information System (INIS)

Habermann, A.

1987-01-01

The venture into the smallest dimensions of the microcosm requires gigantic machines. The HERA storage ring, due for completion in 1989, shall help the scientists at DESY in their venture into new realms of high-energy physics. (orig.) [de

Characterization of the Caenorhabditis elegans HIM-6/BLM helicase: unwinding recombination intermediates.

Science.gov (United States)

Jung, Hana; Lee, Jin A; Choi, Seoyoon; Lee, Hyunwoo; Ahn, Byungchan

2014-01-01

Mutations in three human RecQ genes are implicated in heritable human syndromes. Mutations in BLM, a RecQ gene, cause Bloom syndrome (BS), which is characterized by short stature, cancer predisposition, and sensitivity to sunlight. BLM is a RecQ DNA helicase that, with interacting proteins, is able to dissolve various DNA structures including double Holliday junctions. A BLM ortholog, him-6, has been identified in Caenorhabditis elegans, but little is known about its enzymatic activities or its in vivo roles. By purifying recombinant HIM-6 and performing biochemical assays, we determined that the HIM-6 has DNA-dependent ATPase activity HIM-6 and helicase activity that proceeds in the 3'-5' direction and needs at least five 3' overhanging nucleotides. HIM-6 is also able to unwind DNA structures including D-loops and Holliday junctions. Worms with him-6 mutations were defective in recovering the cell cycle arrest after HU treatment. These activities strongly support in vivo roles for HIM-6 in processing recombination intermediates.

Exclusive photoproduction of {upsilon} mesons at HERA

Energy Technology Data Exchange (ETDEWEB)

Chekanov, S.; Derrick, M.; Magill, S. [Argonne National Laboratory, Argonne, IL (US)] (and others)

2009-03-15

The exclusive photoproduction reaction {gamma} p {yields} {upsilon} p has been studied with the ZEUS experiment in ep collisions at HERA using an integrated luminosity of 468 pb{sup -1}. The measurement covers the kinematic range 60

Operational experience running the HERA-B database system

International Nuclear Information System (INIS)

Amaral, V.; Amorim, A.; Batista, J.

2001-01-01

The HERA-B database system has been used in the commissioning period of the experiment. The authors present the expertise gathered during this period, covering also the improvements introduced and describing the different classes of problems faced in giving persistency to all non-event information. The author aims to give a global overview of the Database group activities, techniques developed and results based on the running experiment and dealing with large Data Volumes during and after the production phase

First Measurement of Charged Current Cross Sections at HERA with Longitudinally Polarised Positrons

CERN Document Server

Aktas, A.; Anthonis, T.; Antunovic, B.; Aplin, S.; Asmone, A.; Astvatsatourov, A.; Babaev, A.; Backovic, S.; Bahr, J.; Baghdasaryan, A.; Baranov, P.; Barrelet, E.; Bartel, W.; Baudrand, S.; Baumgartner, S.; Becker, J.; Beckingham, M.; Behnke, O.; Behrendt, O.; Belousov, A.; Berger, Ch.; Berger, N.; Bizot, J.C.; Boenig, M.-O.; Boudry, V.; Bracinik, J.; Brandt, G.; Brisson, V.; Bruncko, D.; Busser, F.W.; Bunyatyan, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Cassol-Brunner, F.; Cerny, K.; Cerny, V.; Chekelian, V.; Contreras, J.G.; Coughlan, J.A.; Cox, B.E.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Dau, W.D.; Daum, K.; de Boer, Y.; Delcourt, B.; Del Degan, M.; De Roeck, A.; Desch, K.; De Wolf, E.A.; Diaconu, C.; Dodonov, V.; Dubak, A.; Eckerlin, Guenter; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Elsen, E.; Erdmann, W.; Essenov, S.; Falkewicz, A.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Feltesse, J.; Ferencei, J.; Finke, L.; Fleischer, M.; Fleischmann, P.; Flucke, G.; Fomenko, A.; Foresti, I.; Franke, G.; Frisson, T.; Gabathuler, E.; Garutti, E.; Gayler, J.; Gerlich, C.; Ghazaryan, Samvel; Ginzburgskaya, S.; Glazov, A.; Glushkov, I.; Goerlich, L.; Goettlich, M.; Gogitidze, N.; Gorbounov, S.; Goyon, C.; Grab, C.; Greenshaw, T.; Gregori, M.; Grell, B.R.; Grindhammer, Guenter; Gwilliam, C.; Haidt, D.; Hajduk, L.; Hansson, M.; Heinzelmann, G.; Henderson, R.C.W.; Henschel, H.; Herrera, G.; Hildebrandt, M.; Hiller, K.H.; Hoffmann, D.; Horisberger, R.; Hovhannisyan, A.; Hreus, T.; Hussain, S.; Ibbotson, M.; Ismail, M.; Jacquet, M.; Janauschek, L.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, D.P.; Jung, Andreas Werner; Jung, H.; Kapichine, M.; Katzy, J.; Kenyon, I.R.; Kiesling, Christian M.; Klein, M.; Kleinwort, C.; Klimkovich, T.; Kluge, T.; Knies, G.; Knutsson, A.; Korbel, V.; Kostka, P.; Krastev, K.; Kretzschmar, J.; Kropivnitskaya, A.; Kruger, K.; Kuckens, J.; Landon, M.P.J.; Lange, W.; Lastovicka, T.; Lastovicka-Medin, G.; Laycock, P.; Lebedev, A.; Leibenguth, G.; Lendermann, V.; Levonian, S.; Lindfeld, L.; Lipka, K.; Liptaj, A.; List, B.; List, J.; Lobodzinska, E.; Loktionova, N.; Lopez-Fernandez, R.; Lubimov, V.; Lucaci-Timoce, A.-I.; Lueders, H.; Luke, D.; Lux, T.; Lytkin, L.; Makankine, A.; Malden, N.; Malinovski, E.; Mangano, S.; Marage, P.; Marshall, R.; Martisikova, M.; Martyn, H.-U.; Maxfield, S.J.; Meer, D.; Mehta, A.; Meier, K.; Meyer, A.B.; Meyer, H.; Meyer, J.; Michels, V.; Mikocki, S.; Milcewicz-Mika, I.; Milstead, D.; Mladenov, D.; Mohamed, A.; Moreau, F.; Morozov, A.; Morris, J.V.; Mozer, Matthias Ulrich; Muller, K.; Murin, P.; Nankov, K.; Naroska, B.; Naumann, Th.; Newman, Paul R.; Niebuhr, C.; Nikiforov, A.; Nowak, G.; Nozicka, M.; Oganezov, R.; Olivier, B.; Olsson, J.E.; Osman, S.; Ozerov, D.; Palichik, V.; Panagoulias, I.; Papadopoulou, T.; Pascaud, C.; Patel, G.D.; Peng, H.; Perez, E.; Perez-Astudillo, D.; Perieanu, A.; Petrukhin, A.; Pitzl, D.; Placakyte, R.; Portheault, B.; Povh, B.; Prideaux, P.; Rahmat, A.J.; Raicevic, N.; Reisert, B.; Reimer, P.; Rimmer, A.; Risler, C.; Rizvi, E.; Robmann, P.; Roland, B.; Roosen, R.; Rostovtsev, A.; Rurikova, Z.; Rusakov, S.; Salvaire, F.; Sankey, D.P.C.; Sauvan, E.; Schatzel, S.; Schmidt, S.; Schmitt, S.; Schmitz, C.; Schoeffel, L.; Schoning, A.; Schultz-Coulon, H.-C.; Sedlak, K.; Sefkow, F.; Shaw-West, R.N.; Sheviakov, I.; Shtarkov, L.N.; Sloan, T.; Smirnov, P.; Soloviev, Y.; South, D.; Spaskov, V.; Specka, Arnd E.; Steder, M.; Stella, B.; Stiewe, J.; Strauch, I.; Straumann, U.; Sunar, D.; Tchoulakov, V.; Thompson, Graham; Thompson, P.D.; Tomasz, F.; Traynor, D.; Truoel, Peter; Tsakov, I.; Tsipolitis, G.; Tsurin, I.; Turnau, J.; Tzamariudaki, E.; Urban, K.; Usik, A.; Utkin, D.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Vargas Trevino, A.; Vazdik, Y.; Veelken, C.; Vinokurova, S.; Volchinski, V.; Wacker, K.; Wagner, J.; Weber, G.; Weber, R.; Wegener, D.; Werner, C.; Wessels, M.; Wessling, B.; Wigmore, C.; Wissing, Ch.; Wolf, R.; Wunsch, E.; Xella, S.; Yan, W.; Yeganov, V.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhelezov, A.; Zhokin, A.; Zhu, Y.C.; Zimmermann, J.; Zimmermann, T.; Zohrabyan, H.; Zomer, F.

2006-01-01

Data taken with positrons of different longitudinal polarisation states in collision with unpolarised protons at HERA are used to measure the total cross sections of the charged current process, e^+ p \\to \\bar{\

Bounds on the maximum attainable equilibrium spin polarization of protons at high energy in HERA

International Nuclear Information System (INIS)

Vogt, M.

2000-12-01

For some years HERA has been supplying longitudinally spin polarised electron and positron (e ± ) beams to the HERMES experiment and in the future longitudinal polarisation will be supplied to the II1 and ZEUS experiments. As a result there has been a development of interest in complementing the polarised e ± beams with polarised protons. In contrast to the case of e ± where spin flip due to synchrotron radiation in the main bending dipoles leads to self polarisation owing to an up-down asymmetry in the spin flip rates (Sokolov-Ternov effect), there is no convincing self polarisation mechanism for protons at high energy. Therefore protons must be polarised almost at rest in a source and then accelerated to the working energy. At HERA, if no special measures are adopted, this means that the spins must cross several thousand ''spin-orbit resonances''. Resonance crossing can lead to loss of polarisation and at high energy such effects are potentially strong since spin precession is very pronounced in the very large magnetic fields needed to contain the proton beam in HERA-p. Moreover simple models which have been successfully used to describe spin motion at low and medium energies are no longer adequate. Instead, careful numerical spin-orbit tracking simulations are needed and a new, mathematically rigorous look at the theoretical concepts is required. This thesis describes the underlying theoretical concepts, the computational tools (SPRINT) and the results of such a study. In particular strong emphasis is put on the concept of the invariant spin field and its non-perturbative construction. The invariant spin field is then used to define the amplitude dependent spin tune and to obtain numerical non-perturbative estimates of the latter. By means of these two key concepts the nature of higher order resonances in the presence of snakes is clarified and their impact on the beam polarisation is analysed. We then go on to discuss the special aspects of the HERA-p ring

Search for Excited Electrons at HERA

CERN Document Server

Adloff, C.; Andrieu, B.; Anthonis, T.; Astvatsatourov, A.; Babaev, A.; Bahr, J.; Baranov, P.; Barrelet, E.; Bartel, W.; Baumgartner, S.; Becker, J.; Beckingham, M.; Beglarian, A.; Behnke, O.; Belousov, A.; Berger, C.; Berndt, T.; Bizot, J.C.; Bohme, J.; Boudry, V.; Braunschweig, W.; Brisson, V.; Broker, H.B.; Brown, D.P.; Bruncko, D.; Busser, F.W.; Bunyatyan, A.; Burrage, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Caron, S.; Cassol-Brunner, F.; Clarke, D.; Collard, C.; Contreras, J.G.; Coppens, Y.R.; Coughlan, J.A.; Cousinou, M.C.; Cox, B.E.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Dau, W.D.; Daum, K.; Davidsson, M.; Delcourt, B.; Delerue, N.; Demirchyan, R.; De Roeck, A.; De Wolf, E.A.; Diaconu, C.; Dingfelder, J.; Dixon, P.; Dodonov, V.; Dowell, J.D.; Droutskoi, A.; Dubak, A.; Duprel, C.; Eckerlin, Guenter; Eckstein, D.; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Eisenhandler, E.; Ellerbrock, M.; Elsen, E.; Erdmann, M.; Erdmann, W.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Felst, R.; Ferencei, J.; Ferron, S.; Fleischer, M.; Fleischmann, P.; Fleming, Y.H.; Flugge, G.; Fomenko, A.; Foresti, I.; Formanek, J.; Franke, G.; Frising, G.; Gabathuler, E.; Gabathuler, K.; Garvey, J.; Gassner, J.; Gayler, Joerg; Gerhards, R.; Gerlich, C.; Ghazaryan, Samvel; Goerlich, L.; Gogitidze, N.; Grab, C.; Grabski, V.; Grassler, H.; Greenshaw, T.; Grindhammer, Guenter; Hadig, T.; Haidt, D.; Hajduk, L.; Haller, J.; Heinemann, B.; Heinzelmann, G.; Henderson, R.C.W.; Hengstmann, S.; Henschel, H.; Heremans, R.; Herrera, G.; Herynek, I.; Hildebrandt, M.; Hilgers, M.; Hiller, K.H.; Hladky, J.; Hoting, P.; Hoffmann, D.; Horisberger, R.; Hovhannisyan, A.; Hurling, S.; Ibbotson, M.; Issever, C.; Jacquet, M.; Jaffre, M.; Janauschek, L.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, C.; Johnson, D.P.; Jones, M.A.S.; Jung, H.; Kant, D.; Kapichine, M.; Karlsson, M.; Karschnick, O.; Katzy, J.; Keil, F.; Keller, N.; Kennedy, J.; Kenyon, I.R.; Kiesling, Christian M.; Kjellberg, P.; Klein, M.; Kleinwort, C.; Kluge, T.; Knies, G.; Koblitz, B.; Kolya, S.D.; Korbel, V.; Kostka, P.; Kotelnikov, S.K.; Koutouev, R.; Koutov, A.; Kroseberg, J.; Kruger, K.; Kuhr, T.; Lamb, D.; Landon, M.P.J.; Lange, W.; Lastovicka, T.; Laycock, P.; Lebailly, E.; Lebedev, A.; Leissner, B.; Lemrani, R.; Lendermann, V.; Levonian, S.; List, B.; Lobodzinska, E.; Lobodzinski, B.; Loginov, A.; Loktionova, N.; Lubimov, V.; Luders, S.; Luke, D.; Lytkin, L.; Malden, N.; Malinovski, E.; Mangano, S.; Maracek, R.; Marage, P.; Marks, J.; Marshall, R.; Martyn, H.U.; Martyniak, J.; Maxfield, S.J.; Meer, D.; Mehta, A.; Meier, K.; Meyer, A.B.; Meyer, H.; Meyer, J.; Michine, S.; Mikocki, S.; Milstead, D.; Mohrdieck, S.; Mondragon, M.N.; Moreau, F.; Morozov, A.; Morris, J.V.; Muller, K.; Murin, P.; Nagovizin, V.; Naroska, B.; Naumann, J.; Naumann, T.; Newman, Paul R.; Niebergall, F.; Niebuhr, C.; Nix, O.; Nowak, G.; Nozicka, M.; Olivier, B.; Olsson, J.E.; Ozerov, D.; Panassik, V.; Pascaud, C.; Patel, G.D.; Peez, M.; Perez, E.; Petrukhin, A.; Phillips, J.P.; Pitzl, D.; Poschl, R.; Potachnikova, I.; Povh, B.; Rauschenberger, J.; Reimer, P.; Reisert, B.; Risler, C.; Rizvi, E.; Robmann, P.; Roosen, R.; Rostovtsev, A.; Rusakov, S.; Rybicki, K.; Sankey, D.P.C.; Schatzel, S.; Scheins, J.; Schilling, F.P.; Schleper, P.; Schmidt, D.; Schmidt, S.; Schmitt, S.; Schneider, M.; Schoeffel, L.; Schoning, A.; Schorner, T.; Schroder, V.; Schultz-Coulon, H.C.; Schwanenberger, C.; Sedlak, K.; Sefkow, F.; Chekelian, V.; Sheviakov, I.; Shtarkov, L.N.; Sirois, Y.; Sloan, T.; Smirnov, P.; Soloviev, Y.; South, D.; Spaskov, V.; Specka, Arnd E.; Spitzer, H.; Stamen, R.; Stella, B.; Stiewe, J.; Strauch, I.; Straumann, U.; Tchetchelnitski, S.; Thompson, Graham; Thompson, P.D.; Tomasz, F.; Traynor, D.; Truoel, Peter; Tsipolitis, G.; Tsurin, I.; Turnau, J.; Turney, J.E.; Tzamariudaki, E.; Uraev, A.; Urban, Marcel; Usik, A.; Valkar, S.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Vargas Trevino, A.; Vassiliev, S.; Vazdik, Y.; Veelken, C.; Vest, A.; Vichnevski, A.; Wacker, K.; Wagner, J.; Wallny, R.; Waugh, B.; Weber, G.; Wegener, D.; Werner, C.; Werner, N.; Wessels, M.; White, G.; Wiesand, S.; Wilksen, T.; Winde, M.; Winter, G.G.; Wissing, C.; Wobisch, M.; Woehrling, E.E.; Wunsch, E.; Wyatt, A.C.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhokin, A.; Zomer, F.; zur Nedden, M.

2002-01-01

A search for excited electron e* production is described in which the electroweak decays e*->e gamma, e*->e Z and e*->nu W are considered. The data used correspond to an integrated luminosity of 120 pb^(-1) taken in e^(+-)p collisions from 1994 to 2000 with the H1 detector at HERA at centre-of-mass energies of 300 and 318 GeV. No evidence for a signal is found. Mass dependent exclusion limits are derived for the ratio of the couplings to the compositeness scale, f/Lambda. These limits extend the excluded region to higher masses than has been possible in previous direct searches for excited electrons.

Angular correlations in three-jet events in ep collisions at HERA

NARCIS (Netherlands)

Abramowicz, H.; et al., [Unknown; Grigorescu, G.; Keramidas, A.; Koffeman, E.; Kooijman, P.; Pellegrino, A.; Tiecke, H.; Vázquez, M.; Wiggers, L.

2012-01-01

Three-jet production in deep inelastic ep scattering and photoproduction was investigated with the ZEUS detector at HERA using an integrated luminosity of up to 127  pb−1. Measurements of differential cross sections are presented as functions of angular correlations between the three jets in the

Angular correlations in three-jet events in ep collisions at HERA

NARCIS (Netherlands)

Abramowicz, H.; Abt, I.; Kooijman, P.; Zotkin, D.S.

2012-01-01

Three-jet production in deep inelastic ep scattering and photoproduction was investigated with the ZEUS detector at HERA using an integrated luminosity of up to 127  pb-1. Measurements of differential cross sections are presented as functions of angular correlations between the three jets in the

X-ray structure of the pestivirus NS3 helicase and its conformation in solution.

Science.gov (United States)

Tortorici, M Alejandra; Duquerroy, Stéphane; Kwok, Jane; Vonrhein, Clemens; Perez, Javier; Lamp, Benjamin; Bricogne, Gerard; Rümenapf, Till; Vachette, Patrice; Rey, Félix A

2015-04-01

Pestiviruses form a genus in the Flaviviridae family of small enveloped viruses with a positive-sense single-stranded RNA genome. Viral replication in this family requires the activity of a superfamily 2 RNA helicase contained in the C-terminal domain of nonstructural protein 3 (NS3). NS3 features two conserved RecA-like domains (D1 and D2) with ATPase activity, plus a third domain (D3) that is important for unwinding nucleic acid duplexes. We report here the X-ray structure of the pestivirus NS3 helicase domain (pNS3h) at a 2.5-Å resolution. The structure deviates significantly from that of NS3 of other genera in the Flaviviridae family in D3, as it contains two important insertions that result in a narrower nucleic acid binding groove. We also show that mutations in pNS3h that rescue viruses from which the core protein is deleted map to D3, suggesting that this domain may be involved in interactions that facilitate particle assembly. Finally, structural comparisons of the enzyme in different crystalline environments, together with the findings of small-angle X-ray-scattering studies in solution, show that D2 is mobile with respect to the rest of the enzyme, oscillating between closed and open conformations. Binding of a nonhydrolyzable ATP analog locks pNS3h in a conformation that is more compact than the closest apo-form in our crystals. Together, our results provide new insight and bring up new questions about pNS3h function during pestivirus replication. Although pestivirus infections impose an important toll on the livestock industry worldwide, little information is available about the nonstructural proteins essential for viral replication, such as the NS3 helicase. We provide here a comparative structural and functional analysis of pNS3h with respect to its orthologs in other viruses of the same family, the flaviviruses and hepatitis C virus. Our studies reveal differences in the nucleic acid binding groove that could have implications for understanding the

Measurement of the longitudinal proton structure function at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2009-03-01

The reduced cross sections for ep deep inelastic scattering have been measured with the ZEUS detector at HERA at three different centre-of-mass energies, 318, 251 and 225 GeV. From the cross sections, measured double differentially in Bjorken x and the virtuality, Q 2 , the proton structure functions F L and F 2 have been extracted in the region 5 x 10 -4 2 2 . (orig.)

High spin polarisation at the HERA electron storage ring

International Nuclear Information System (INIS)

Barber, D.P.; Boege, M.; Bremer, H.D.; Brinkmann, R.; Gianfelice-Wendt, E.; Kaiser, R.; Klanner, R.; Lewin, H.C.; Meyners, N.; Ripken, G.; Zapfe, K.; Boettcher, H.; Dueren, M.; Steffens, E.; Lomperski, M.; Rith, K.; Westphal, D.; Zetsche, F.

1993-04-01

This paper describes the progress made in 1992 towards increasing the vertical electron beam polarization at HERA. Utilizing harmonic spin-orbit corrections and beam tuning, the vertical polarization has been increased from 15% to nearly 60% at a beam energy of 26.7 GeV. The long-term reproducibility of the polarization is excellent. Measurements of the build-up time and the energy dependence of the polarization are also described. (orig.)

Mycobacterium smegmatis HelY Is an RNA-Activated ATPase/dATPase and 3'-to-5' Helicase That Unwinds 3'-Tailed RNA Duplexes and RNA:DNA Hybrids.

Science.gov (United States)

Uson, Maria Loressa; Ordonez, Heather; Shuman, Stewart

2015-10-01

Mycobacteria have a large and distinctive ensemble of DNA helicases that function in DNA replication, repair, and recombination. Little is known about the roster of RNA helicases in mycobacteria or their roles in RNA transactions. The 912-amino-acid Mycobacterium smegmatis HelY (MSMEG_3885) protein is a bacterial homolog of the Mtr4 and Ski2 helicases that regulate RNA 3' processing and turnover by the eukaryal exosome. Here we characterize HelY as an RNA-stimulated ATPase/dATPase and an ATP/dATP-dependent 3'-to-5' helicase. HelY requires a 3' single-strand RNA tail (a loading RNA strand) to displace the complementary strand of a tailed RNA:RNA or RNA:DNA duplex. The findings that HelY ATPase is unresponsive to a DNA polynucleotide cofactor and that HelY is unable to unwind a 3'-tailed duplex in which the loading strand is DNA distinguish HelY from other mycobacterial nucleoside triphosphatases/helicases characterized previously. The biochemical properties of HelY, which resemble those of Mtr4/Ski2, hint at a role for HelY in mycobacterial RNA catabolism. RNA helicases play crucial roles in transcription, RNA processing, and translation by virtue of their ability to alter RNA secondary structure or remodel RNA-protein interactions. In eukarya, the RNA helicases Mtr4 and Ski2 regulate RNA 3' resection by the exosome. Mycobacterium smegmatis HelY, a bacterial homolog of Mtr4/Ski2, is characterized here as a unidirectional helicase, powered by RNA-dependent ATP/dATP hydrolysis, that tracks 3' to 5' along a loading RNA strand to displace the complementary strand of a tailed RNA:RNA or RNA:DNA duplex. The biochemical properties of HelY suggest a role in bacterial RNA transactions. HelY homologs are present in pathogenic mycobacteria (e.g., M. tuberculosis and M. leprae) and are widely prevalent in Actinobacteria and Cyanobacteria but occur sporadically elsewhere in the bacterial domain. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Search for excited leptons in the data of the H1 experiment at the HERA collider; Recherche de leptons excites dans les donnees de l'experience H1 aupres du collisionneur HERA

Energy Technology Data Exchange (ETDEWEB)

Delerue, N

2002-05-01

Composite models are one of the possible extensions of the Standard Model. One of their implications, at the energy in the reach of present particles accelerators, would be the excitation of leptons. This PhD. thesis describes the search for excited leptons with the H1 detector installed on the electron-proton collider HERA in Hamburg (Germany). The data used were accumulated between 1994 and 2000 and amount to an integrated luminosity of 120 pb{sup -1}. The analysis of 6 different topologies were done and cover all the branching ratios of deexcitation of excited electron and neutrino. The numbers of candidates found during those analysis is in agreement with the Standard Model expectations. This means that no evidence of excited leptons production was found at HERA. This result was translated in the form of exclusion limits on the coupling of excited leptons (f/{lambda}) depending on the mass of the excited lepton. For the first time at HERA we addressed the case were the natural decay width of the excited neutrino is wider than the experimental resolution. For the first time also, a study of the variation of limit depending on the ratio f'/f was carried out. This study lead to the setting of limits independent of this ratio. The limits obtained extend results previously obtained at HEA and also the results of direct searches at LEP. (author)

CATS: a cellular automaton for tracking in silicon for the HERA-B vertex detector

International Nuclear Information System (INIS)

Abt, I.; Emeliyanov, D.; Kisel, I.; Masciocchi, S.

2002-01-01

The new track reconstruction program CATS developed for the Vertex Detector System of the HERA-B experiment at DESY is presented. It employs a cellular automaton for track searching and the Kalman filter for track fitting. This results in a very fast algorithm that combines highly efficient track recognition with accurate and reliable track parameter estimation. To reduce the computational cost of the fit an optimized numerical implementation of the Kalman filter is used. Alternative approaches to the track reconstruction in the VDS are also discussed. Since 1999, after extensive tests on simulated data, CATS has been employed to reconstruct experimental data collected in HERA-B. Results regarding tracking performance, the accuracy of track parameter estimates and CPU time consumption are presented

Recent results from the H1 collaboration at HERA

International Nuclear Information System (INIS)

Feltesse, J.

1994-01-01

New results from the H1 experiment at the electron-proton collider HERA are reported. Evidence for hard scattering in gamma diffraction in photoproduction events is presented. The hadronic final state in low x deep inelastic scattering (DIS) events has been analyzed. Transverse energy flow and cross section for production of jets at high x j are compared to the expectations of present Monte Carlo programs and to analytical calculations based on the BFKL evolution equation. DIS interactions with no hadronic energy flow in a large interval of rapidity around the incident proton direction are presented. The data are compared to models based on deep inelastic pomeron scattering or on MVD contributions. Measured cross sections for the production of multijet in DIS events at HERA are used to provide a preliminary measurement of the strong coupling constant alpha s , together with the first direct measurement of the gluon density in the proton. The cross section of the charged current process e - p → ν e + hadrons is measured. The effects of the W propagator term is visible for the first time. New limits on leptoquarks, leptogluons, Squarks from R-parity violating supersymmetry and on excited leptons are given. (author). 20 figs., 34 refs

The Drosophila Helicase MLE Targets Hairpin Structures in Genomic Transcripts.

Directory of Open Access Journals (Sweden)

Simona Cugusi

2016-01-01

Full Text Available RNA hairpins are a common type of secondary structures that play a role in every aspect of RNA biochemistry including RNA editing, mRNA stability, localization and translation of transcripts, and in the activation of the RNA interference (RNAi and microRNA (miRNA pathways. Participation in these functions often requires restructuring the RNA molecules by the association of single-strand (ss RNA-binding proteins or by the action of helicases. The Drosophila MLE helicase has long been identified as a member of the MSL complex responsible for dosage compensation. The complex includes one of two long non-coding RNAs and MLE was shown to remodel the roX RNA hairpin structures in order to initiate assembly of the complex. Here we report that this function of MLE may apply to the hairpins present in the primary RNA transcripts that generate the small molecules responsible for RNA interference. Using stocks from the Transgenic RNAi Project and the Vienna Drosophila Research Center, we show that MLE specifically targets hairpin RNAs at their site of transcription. The association of MLE at these sites is independent of sequence and chromosome location. We use two functional assays to test the biological relevance of this association and determine that MLE participates in the RNAi pathway.

MRE11 complex links RECQ5 helicase to sites of DNA damage

Czech Academy of Sciences Publication Activity Database

Zheng, L.; Kanagaraj, R.; Mihaljevic, B.; Schwendener, S.; Sartori, A.A.; Gerrits, B.; Shevelev, Igor; Janščák, Pavel

2009-01-01

Roč. 37, č. 8 (2009), s. 2645-2657 ISSN 0305-1048 R&D Projects: GA ČR GA204/09/0565 Institutional research plan: CEZ:AV0Z50520514 Keywords : homologous recombination, * RECQ5 helicase * MRE11 * DNA repair Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 7.479, year: 2009

Isolation and Characterization of Pepper Genes Interacting with the CMV-P1 Helicase Domain.

Directory of Open Access Journals (Sweden)

Yoomi Choi

Full Text Available Cucumber mosaic virus (CMV is a destructive pathogen affecting Capsicum annuum (pepper production. The pepper Cmr1 gene confers resistance to most CMV strains, but is overcome by CMV-P1 in a process dependent on the CMV-P1 RNA1 helicase domain (P1 helicase. Here, to identify host factors involved in CMV-P1 infection in pepper, a yeast two-hybrid library derived from a C. annuum 'Bukang' cDNA library was screened, producing a total of 76 potential clones interacting with the P1 helicase. Beta-galactosidase filter lift assay, PCR screening, and sequencing analysis narrowed the candidates to 10 genes putatively involved in virus infection. The candidate host genes were silenced in Nicotiana benthamiana plants that were then inoculated with CMV-P1 tagged with the green fluorescent protein (GFP. Plants silenced for seven of the genes showed development comparable to N. benthamiana wild type, whereas plants silenced for the other three genes showed developmental defects including stunting and severe distortion. Silencing formate dehydrogenase and calreticulin-3 precursor led to reduced virus accumulation. Formate dehydrogenase-silenced plants showed local infection in inoculated leaves, but not in upper (systemic leaves. In the calreticulin-3 precursor-silenced plants, infection was not observed in either the inoculated or the upper leaves. Our results demonstrate that formate dehydrogenase and calreticulin-3 precursor are required for CMV-P1 infection.

Study of tau-pair production at HERA

Energy Technology Data Exchange (ETDEWEB)

Abramowicz, H. [Tel Aviv Univ. (Israel). School of Physics; Max Planck Institute for Physics, Munich (Germany); Adamczyk, L. [AGH-Univ. of Science and Technology, Cracow (Poland). Faculty of Physics and Applied Computer Science; Adamus, M. [Institute for Nuclear Studies, Warsaw (PL)] (and others)

2010-12-15

A study of events containing two tau leptons with high transverse momentum has been performed with the ZEUS detector at HERA, using a data sample corresponding to an integrated luminosity of 0.33 fb{sup -1}. The tau candidates were identified from their decays into electrons, muons or hadronic jets. The number of tau-pair candidates has been compared with the prediction from the Standard Model, where the largest contribution is expected from Bethe-Heitler processes. The total visible cross section was extracted. Standard Model expectations agree well with the measured distributions, also at high invariant mass of the tau pair. (orig.)

A Search for Excited Fermions at HERA

CERN Document Server

Adloff, C.; Andrieu, B.; Arkadov, V.; Astvatsatourov, A.; Ayyaz, I.; Babaev, A.; Bahr, J.; Baranov, P.; Barrelet, E.; Bartel, W.; Bassler, U.; Bate, P.; Beglarian, A.; Behnke, O.; Beier, C.; Belousov, A.; Benisch, T.; Berger, Christoph; Bernardi, G.; Berndt, T.; Bizot, J.C.; Borras, K.; Boudry, V.; Braunschweig, W.; Brisson, V.; Broker, H.B.; Brown, D.P.; Bruckner, W.; Bruel, P.; Bruncko, D.; Burger, J.; Busser, F.W.; Bunyatyan, A.; Burkhardt, H.; Burrage, A.; Buschhorn, G.; Campbell, A.J.; Cao, Jun; Carli, T.; Caron, S.; Chabert, E.; Clarke, D.; Clerbaux, B.; Collard, C.; Contreras, J.G.; Coughlan, J.A.; Cousinou, M.C.; Cox, B.E.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Dau, W.D.; Daum, K.; Davidsson, M.; Delcourt, B.; Delerue, N.; Demirchyan, R.; De Roeck, A.; De Wolf, E.A.; Diaconu, C.; Dixon, P.; Dodonov, V.; Dowell, J.D.; Droutskoi, A.; Duprel, C.; Eckerlin, Guenter; Eckstein, D.; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Eisenhandler, E.; Ellerbrock, M.; Elsen, E.; Erdmann, M.; Erdmann, W.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Felst, R.; Ferencei, J.; Ferron, S.; Fleischer, M.; Flugge, G.; Fomenko, A.; Foresti, I.; Formanek, J.; Foster, J.M.; Franke, G.; Gabathuler, E.; Gabathuler, K.; Garvey, J.; Gassner, J.; Gayler, Joerg; Gerhards, R.; Ghazaryan, Samvel; Goerlich, L.; Gogitidze, N.; Goldberg, M.; Goodwin, C.; Grab, C.; Grassler, H.; Greenshaw, T.; Grindhammer, Guenter; Hadig, T.; Haidt, D.; Hajduk, L.; Haynes, W.J.; Heinemann, B.; Heinzelmann, G.; Henderson, R.C.W.; Hengstmann, S.; Henschel, H.; Heremans, R.; Herrera, G.; Herynek, I.; Hilgers, M.; Hiller, K.H.; Hladky, J.; Hoting, P.; Hoffmann, D.; Hoprich, W.; Horisberger, R.; Hurling, S.; Ibbotson, M.; Issever, C .; Jacquet, M.; Jaffre, M.; Janauschek, L.; Jansen, D.M.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, D.P.; Jones, M.A.S.; Jung, H.; Kastli, H.K.; Kant, D.; Kapichine, M.; Karlsson, M.; Karschnick, O.; Kaufmann, O.; Kausch, M.; Keil, F.; Keller, N.; Kennedy, J.; Kenyon, I.R.; Kermiche, S.; Kiesling, Christian M.; Klein, M.; Kleinwort, C.; Knies, G.; Koblitz, B.; Kolya, S.D.; Korbel, V.; Kostka, P.; Kotelnikov, S.K.; Krasny, M.W.; Krehbiel, H.; Kroseberg, J.; Kruger, K.; Kupper, A.; Kuhr, T.; Kurca, T.; Kutuev, R.; Lachnit, W.; Lahmann, R.; Lamb, D.; Landon, M.P.J.; Lange, W.; Lastovicka, T.; Lebailly, E.; Lebedev, A.; Leissner, B.; Lemrani, R.; Lendermann, V.; Levonian, S.; Lindstroem, M.; Lobodzinska, E.; Lobodzinski, B.; Loktionova, N.; Lubimov, V.; Luders, S.; Luke, D.; Lytkin, L.; Magnussen, N.; Mahlke-Kruger, H.; Malden, N.; Malinovski, E.; Malinovski, I.; Maracek, R.; Marage, P.; Marks, J.; Marshall, R.; Martyn, H.U.; Martyniak, J.; Maxfield, S.J.; Mehta, A.; Meier, K.; Merkel, P.; Metlica, F.; Meyer, H.; Meyer, J.; Meyer, P.O.; Mikocki, S.; Milstead, D.; Mkrtchyan, T.; Mohr, R.; Mohrdieck, S.; Mondragon, M.N.; Moreau, F.; Morozov, A.; Morris, J.V.; Muller, K.; Murin, P.; Nagovizin, V.; Naroska, B.; Naumann, J.; Naumann, Th.; Negri, I.; Nellen, G.; Newman, Paul R.; Nicholls, T.C.; Niebergall, F.; Niebuhr, C.; Nix, O.; Nowak, G.; Nunnemann, T.; Olsson, J.E.; Ozerov, D.; Panassik, V.; Pascaud, C.; Patel, G.D.; Perez, E.; Phillips, J.P.; Pitzl, D.; Poschl, R.; Potachnikova, I.; Povh, B.; Rabbertz, K.; Radel, G.; Rauschenberger, J.; Reimer, P.; Reisert, B.; Reyna, D.; Riess, S.; Rizvi, E.; Robmann, P.; Roosen, R.; Rostovtsev, A.; Royon, C.; Rusakov, S.; Rybicki, K.; Sankey, D.P.C.; Scheins, J.; Schilling, F.P.; Schleper, P.; Schmidt, D.; Schmitt, S.; Schoeffel, L.; Schoning, A.; Schorner, T.; Schroder, V.; Schultz-Coulon, H.C.; Sedlak, K.; Sefkow, F.; Chekelian, V.; Sheviakov, I.; Shtarkov, L.N.; Siegmon, G.; Sievers, P.; Sirois, Y.; Sloan, T.; Smirnov, P.; Solochenko, V.; Solovev, Y.; Spaskov, V.; Specka, Arnd E.; Spitzer, H.; Stamen, R.; Steinhart, J.; Stella, B.; Stellberger, A.; Stiewe, J.; Straumann, U.; Struczinski, W.; Swart, M.; Tasevsky, M.; Tchernyshov, V.; Tchetchelnitski, S.; Thompson, Graham; Thompson, P.D.; Tobien, N.; Traynor, D.; Truoel, Peter; Tsipolitis, G.; Turnau, J.; Turney, J.E.; Tzamariudaki, E.; Udluft, S.; Usik, A.; Valkar, S.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Vazdik, Y.; von Dombrowski, S.; Wacker, K.; Wallny, R.; Walter, T.; Waugh, B.; Weber, G.; Weber, M.; Wegener, D.; Wegner, A.; Wengler, T.; Werner, M.; White, G.; Wiesand, S.; Wilksen, T.; Winde, M.; Winter, G.G.; Wissing, C.; Wobisch, M.; Wollatz, H.; Wunsch, E.; Wyatt, A.C.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhokin, A.; Zomer, F.; Zsembery, J.; zur Nedden, M.

2000-01-01

A search for excited fermions f^* of the first generation in e^+p scattering at the collider HERA is presented using H1 data with an integrated luminosity of 37 pb^(-1). All electroweak decays of excited fermions, f^* -> f gamma, f W, f Z are considered and all possible final states resulting from the Z or W hadronic decays or decays into leptons of the first two generations are taken into account. No evidence for f^* production is found. Mass dependent exclusion limits on cross-sections and on the ratio of coupling constants to the compositeness scale are derived.

Human events reference for ATHEANA (HERA) database description and preliminary user`s manual

Energy Technology Data Exchange (ETDEWEB)

Auflick, J.L.; Hahn, H.A.; Pond, D.J.

1998-05-27

The Technique for Human Error Analysis (ATHEANA) is a newly developed human reliability analysis (HRA) methodology that aims to facilitate better representation and integration of human performance into probabilistic risk assessment (PRA) modeling and quantification by analyzing risk-significant operating experience in the context of existing behavioral science models. The fundamental premise of ATHEANA is that error-forcing contexts (EFCs), which refer to combinations of equipment/material conditions and performance shaping factors (PSFs), set up or create the conditions under which unsafe actions (UAs) can occur. Because ATHEANA relies heavily on the analysis of operational events that have already occurred as a mechanism for generating creative thinking about possible EFCs, a database, called the Human Events Reference for ATHEANA (HERA), has been developed to support the methodology. This report documents the initial development efforts for HERA.

A conserved helicase processivity factor is needed for conjugation and replication of an integrative and conjugative element.

Directory of Open Access Journals (Sweden)

Jacob Thomas

Full Text Available Integrative and conjugative elements (ICEs are agents of horizontal gene transfer and have major roles in evolution and acquisition of new traits, including antibiotic resistances. ICEs are found integrated in a host chromosome and can excise and transfer to recipient bacteria via conjugation. Conjugation involves nicking of the ICE origin of transfer (oriT by the ICE-encoded relaxase and transfer of the nicked single strand of ICE DNA. For ICEBs1 of Bacillus subtilis, nicking of oriT by the ICEBs1 relaxase NicK also initiates rolling circle replication. This autonomous replication of ICEBs1 is critical for stability of the excised element in growing cells. We found a conserved and previously uncharacterized ICE gene that is required for conjugation and replication of ICEBs1. Our results indicate that this gene, helP (formerly ydcP, encodes a helicase processivity factor that enables the host-encoded helicase PcrA to unwind the double-stranded ICEBs1 DNA. HelP was required for both conjugation and replication of ICEBs1, and HelP and NicK were the only ICEBs1 proteins needed for replication from ICEBs1 oriT. Using chromatin immunoprecipitation, we measured association of HelP, NicK, PcrA, and the host-encoded single-strand DNA binding protein Ssb with ICEBs1. We found that NicK was required for association of HelP and PcrA with ICEBs1 DNA. HelP was required for association of PcrA and Ssb with ICEBs1 regions distal, but not proximal, to oriT, indicating that PcrA needs HelP to progress beyond nicked oriT and unwind ICEBs1. In vitro, HelP directly stimulated the helicase activity of the PcrA homologue UvrD. Our findings demonstrate that HelP is a helicase processivity factor needed for efficient unwinding of ICEBs1 for conjugation and replication. Homologues of HelP and PcrA-type helicases are encoded on many known and putative ICEs. We propose that these factors are essential for ICE conjugation, replication, and genetic stability.

Elastic J/ψ production at low Q2 at HERA

International Nuclear Information System (INIS)

Huber, Florian

2010-05-01

In this diploma thesis the elastic J/ψ vector meson photoproduction (ep→eJ/ψp) is studied in the decay channel J/ψ→e + e - with the H1 detector at the electron proton collider HERA. The data from the runs of the year 2007 with an integrated luminosity of 62.4 pb -1 are used. In this time HERA operated with tree different proton energies E p called high (920 GeV), medium (575 GeV) and low (460 GeV) with integrated luminosities 45.5 (high), 5.96 (medium) and 10.9 pb -1 (low). The kinematical region of vertical stroke t vertical stroke 2 , where t is the four momentum transfer at the proton vertex, and Q e 2 γp , is restricted to 40 GeV γp γp γp -b 0 vertical stroke t vertical stroke , which yields to b 0 =4.4±0.2(stat.). The cross section as a function of W γp is fitted by a power law, dσ/dW γp ∝W δ γp , and gives δ=0.66±0.07(stat.). (orig.)

Photoproduction of the J/{psi} meson at HERA at next-to-leading order within the framework of nonrelativistic QCD

Energy Technology Data Exchange (ETDEWEB)

Butenschoen, Mathias

2009-06-15

Nonrelativistic QCD (NRQCD) provides a rigorous factorization scheme which describes the production and decay of heavy quarkonia. It has been a desire for 13 years to know the NRQCD NLO predictions for both J/{psi} hadroproduction and photoproduction, in order to be able to check the universality of the color octet long distance matrix elements (MEs) by comparing Tevatron and HERA data. In this work we calculate for the rst time the NRQCD NLO prediction for direct photoproduction at HERA and compare our result with recent H1 data. Our results show clear evidence that the color octet mechanism of NRQCD is indeed realized in J/{psi} photoproduction at HERA. We solved a number of open conceptual problems, probably the most important one being the issue of Coulomb singularities. We found a way to evaluate the virtual corrections without having to deal with them. (orig.)

Functional interaction between Smad, CREB binding protein, and p68 RNA helicase

International Nuclear Information System (INIS)

Warner, Dennis R.; Bhattacherjee, Vasker; Yin, Xiaolong; Singh, Saurabh; Mukhopadhyay, Partha; Pisano, M. Michele; Greene, Robert M.

2004-01-01

The transforming growth factors β control a diversity of biological processes including cellular proliferation, differentiation, apoptosis, and extracellular matrix production, and are critical effectors of embryonic patterning and development, including that of the orofacial region. TGFβ superfamily members signal through specific cell surface receptors that phosphorylate the cytoplasmic Smad proteins, resulting in their translocation to the nucleus and interaction with promoters of TGFβ-responsive genes. Subsequent alterations in transcription are cell type-specific and dependent on recruitment to the Smad/transcription factor complex of coactivators, such as CBP and p300, or corepressors, such as c-ski and SnoN. Since the affinity of Smads for DNA is generally low, additional accessory proteins that facilitate Smad/DNA binding are required, and are often cell- and tissue-specific. In order to identify novel Smad 3 binding proteins in developing orofacial tissue, a yeast two hybrid assay was employed in which the MH2 domain of Smad 3 was used to screen an expression library derived from mouse embryonic orofacial tissue. The RNA helicase, p68, was identified as a unique Smad binding protein, and the specificity of the interaction was confirmed through various in vitro and in vivo assays. Co-expression of Smad 3 and a CBP-Gal4 DNA binding domain fusion protein in a Gal4-luciferase reporter assay resulted in increased TGFβ-stimulated reporter gene transcription. Moreover, co-expression of p68 RNA helicase along with Smad 3 and CBP-Gal4 resulted in synergistic activation of Gal4-luciferase reporter expression. Collectively, these data indicate that the RNA helicase, p68, can directly interact with Smad 3 resulting in formation of a transcriptionally active ternary complex containing Smad 3, p68, and CBP. This offers a means of enhancing TGFβ-mediated cellular responses in developing orofacial tissue

The nuclear import of RNA helicase A is mediated by importin-α3

International Nuclear Information System (INIS)

Aratani, Satoko; Oishi, Takayuki; Fujita, Hidetoshi; Nakazawa, Minako; Fujii, Ryouji; Imamoto, Naoko; Yoneda, Yoshihiro; Fukamizu, Akiyoshi; Nakajima, Toshihiro

2006-01-01

RNA helicase A (RHA), an ATPase/helicase, regulates the gene expression at various steps including transcriptional activation and RNA processing. RHA is known to shuttle between the nucleus and cytoplasm. We identified the nuclear localization signal (NLS) of RHA and analyzed the nuclear import mechanisms. The NLS of RHA (RHA-NLS) consisting of 19 amino acid residues is highly conserved through species and does not have the consensus classical NLS. In vitro nuclear import assays revealed that the nuclear import of RHA was Ran-dependent and mediated with the classical importin-α/β-dependent pathway. The binding assay indicated that the basic residues in RHA-NLS were used for interaction with importin-α. Furthermore, the nuclear import of RHA-NLS was supported by importin-α1 and preferentially importin-α3. Our results indicate that the nuclear import of RHA is mediated by the importin-α3/importin-β-dependent pathway and suggest that the specificity for importin may regulate the functions of cargo proteins

Search for excited leptons in the data of the H1 experiment at the HERA collider; Recherche de leptons excites dans les donnees de l'experience H1 aupres du collisionneur HERA

Energy Technology Data Exchange (ETDEWEB)

Delerue, N

2002-05-01

Composite models are one of the possible extensions of the Standard Model. One of their implications, at the energy in the reach of present particles accelerators, would be the excitation of leptons. This PhD. thesis describes the search for excited leptons with the H1 detector installed on the electron-proton collider HERA in Hamburg (Germany). The data used were accumulated between 1994 and 2000 and amount to an integrated luminosity of 120 pb{sup -1}. The analysis of 6 different topologies were done and cover all the branching ratios of deexcitation of excited electron and neutrino. The numbers of candidates found during those analysis is in agreement with the Standard Model expectations. This means that no evidence of excited leptons production was found at HERA. This result was translated in the form of exclusion limits on the coupling of excited leptons (f/{lambda}) depending on the mass of the excited lepton. For the first time at HERA we addressed the case were the natural decay width of the excited neutrino is wider than the experimental resolution. For the first time also, a study of the variation of limit depending on the ratio f'/f was carried out. This study lead to the setting of limits independent of this ratio. The limits obtained extend results previously obtained at HEA and also the results of direct searches at LEP. (author)

Phenomenology of leading nucleon production in e p collisions at HERA in the framework of fracture functions

Science.gov (United States)

Shoeibi, Samira; Taghavi-Shahri, F.; Khanpour, Hamzeh; Javidan, Kurosh

2018-04-01

In recent years, several experiments at the e-p collider HERA have collected high precision deep-inelastic scattering (DIS) data on the spectrum of leading nucleon carrying a large fraction of the proton's energy. In this paper, we have analyzed recent experimental data on the production of forward protons and neutrons in DIS at HERA in the framework of a perturbative QCD. We propose a technique based on the fractures functions framework, and extract the nucleon fracture functions (FFs) M2(n /p )(x ,Q2;xL) from global QCD analysis of DIS data measured by the ZEUS Collaboration at HERA. We have shown that an approach based on the fracture functions formalism allows us to phenomenologically parametrize the nucleon FFs. Considering both leading neutron as well as leading proton production data at HERA, we present the results for the separate parton distributions for all parton species, including valence quark densities, the antiquark densities, the strange sea distribution, and the gluon distribution functions. We proposed several parametrizations for the nucleon FFs and open the possibility of these asymmetries. The obtained optimum set of nucleon FFs is accompanied by Hessian uncertainty sets which allow one to propagate uncertainties to other observables interest. The extracted results for the t -integrated leading neutron F2LN (3 )(x ,Q2;xL) and leading proton F2LP (3 )(x ,Q2;xL) structure functions are in good agreement with all data analyzed, for a wide range of fractional momentum variable x as well as the longitudinal momentum fraction xL.

Robust translocation along a molecular monorail: the NS3 helicase from hepatitis C virus traverses unusually large disruptions in its track.

Science.gov (United States)

Beran, Rudolf K F; Bruno, Michael M; Bowers, Heath A; Jankowsky, Eckhard; Pyle, Anna Marie

2006-05-12

The NS3 helicase is essential for replication of the hepatitis C virus. This multifunctional Superfamily 2 helicase protein unwinds nucleic acid duplexes in a stepwise, ATP-dependent manner. Although kinetic features of its mechanism are beginning to emerge, little is known about the physical determinants for NS3 translocation along a strand of nucleic acid. For example, it is not known whether NS3 can traverse covalent or physical discontinuities on the tracking strand. Here we provide evidence that NS3 translocates with a mechanism that is different from its well-studied relative, the Vaccinia helicase NPH-II. Like NPH-II, NS3 translocates along the loading strand (the strand bearing the 3'-overhang) and it fails to unwind substrates that contain nicks, or covalent discontinuities in the loading strand. However, unlike NPH-II, NS3 readily unwinds RNA duplexes that contain long stretches of polyglycol, which are moieties that bear no resemblance to nucleic acid. Whether located on the tracking strand, the top strand, or both, long polyglycol regions fail to disrupt the function of NS3. This suggests that NS3 does not require the continuous formation of specific contacts with the ribose-phosphate backbone as it translocates along an RNA duplex, which is an observation consistent with the large NS3 kinetic step size (18 base-pairs). Rather, once NS3 loads onto a substrate, the helicase can translocate along the loading strand of an RNA duplex like a monorail train following a track. Bumps in the track do not significantly disturb NS3 unwinding, but a break in the track de-rails the helicase.

BLM helicase measures DNA unwound before switching strands and hRPA promotes unwinding reinitiation

Czech Academy of Sciences Publication Activity Database

Yodh, J.G.; Stevens, B.C.; Kanagaraj, R.; Janščák, Pavel; Ha, T.

2009-01-01

Roč. 28, č. 4 (2009), s. 405-416 ISSN 0261-4189 Institutional research plan: CEZ:AV0Z50520514 Keywords : Bloom syndrome * FRET * helicase * hRPA * single molecule Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 8.993, year: 2009

Unique Helicase Determinants in the Essential Conjugative TraI Factor from Salmonella enterica Serovar Typhimurium Plasmid pCU1

Energy Technology Data Exchange (ETDEWEB)

McLaughlin, Krystle J.; Nash, Rebekah P.; Redinbo, Mathew R. (UNC)

2014-06-16

The widespread development of multidrug-resistant bacteria is a major health emergency. Conjugative DNA plasmids, which harbor a wide range of antibiotic resistance genes, also encode the protein factors necessary to orchestrate the propagation of plasmid DNA between bacterial cells through conjugative transfer. Successful conjugative DNA transfer depends on key catalytic components to nick one strand of the duplex DNA plasmid and separate the DNA strands while cell-to-cell transfer occurs. The TraI protein from the conjugative Salmonella plasmid pCU1 fulfills these key catalytic roles, as it contains both single-stranded DNA-nicking relaxase and ATP-dependent helicase domains within a single, 1,078-residue polypeptide. In this work, we unraveled the helicase determinants of Salmonella pCU1 TraI through DNA binding, ATPase, and DNA strand separation assays. TraI binds DNA substrates with high affinity in a manner influenced by nucleic acid length and the presence of a DNA hairpin structure adjacent to the nick site. TraI selectively hydrolyzes ATP, and mutations in conserved helicase motifs eliminate ATPase activity. Surprisingly, the absence of a relatively short (144-residue) domain at the extreme C terminus of the protein severely diminishes ATP-dependent strand separation. Collectively, these data define the helicase motifs of the conjugative factor TraI from Salmonella pCU1 and reveal a previously uncharacterized C-terminal functional domain that uncouples ATP hydrolysis from strand separation activity.

AtRH57, a DEAD-box RNA helicase, is involved in feedback inhibition of glucose-mediated abscisic acid accumulation during seedling development and additively affects pre-ribosomal RNA processing with high glucose.

Science.gov (United States)

Hsu, Yi-Feng; Chen, Yun-Chu; Hsiao, Yu-Chun; Wang, Bing-Jyun; Lin, Shih-Yun; Cheng, Wan-Hsing; Jauh, Guang-Yuh; Harada, John J; Wang, Co-Shine

2014-01-01

The Arabidopsis thaliana T-DNA insertion mutant rh57-1 exhibited hypersensitivity to glucose (Glc) and abscisic acid (ABA). The other two rh57 mutants also showed Glc hypersensitivity similar to rh57-1, strongly suggesting that the Glc-hypersensitive feature of these mutants results from mutation of AtRH57. rh57-1 and rh57-3 displayed severely impaired seedling growth when grown in Glc concentrations higher than 3%. The gene, AtRH57 (At3g09720), was expressed in all Arabidopsis organs and its transcript was significantly induced by ABA, high Glc and salt. The new AtRH57 belongs to class II DEAD-box RNA helicase gene family. Transient expression of AtRH57-EGFP (enhanced green fluorescent protein) in onion cells indicated that AtRH57 was localized in the nucleus and nucleolus. Purified AtRH57-His protein was shown to unwind double-stranded RNA independent of ATP in vitro. The ABA biosynthesis inhibitor fluridone profoundly redeemed seedling growth arrest mediated by sugar. rh57-1 showed increased ABA levels when exposed to high Glc. Quantitative real time polymerase chain reaction analysis showed that AtRH57 acts in a signaling network downstream of HXK1. A feedback inhibition of ABA accumulation mediated by AtRH57 exists within the sugar-mediated ABA signaling. AtRH57 mutation and high Glc conditions additively caused a severe defect in small ribosomal subunit formation. The accumulation of abnormal pre-rRNA and resistance to protein synthesis-related antibiotics were observed in rh57 mutants and in the wild-type Col-0 under high Glc conditions. These results suggested that AtRH57 plays an important role in rRNA biogenesis in Arabidopsis and participates in response to sugar involving Glc- and ABA signaling during germination and seedling growth. © 2013 The Authors The Plant Journal © 2013 John Wiley & Sons Ltd.

Measurement of the proton structure function F2 at low χand low Q2 at HERA

International Nuclear Information System (INIS)

Derrick, M.; Krakauer, D.; Magill, S.

1995-10-01

We report on a measurement of the proton structure function F 2 in the range 3.5x10 -5 ≤x≤4x10 -3 and 1.5 GeV 2 ≤Q 2 ≤15 GeV 2 at the ep collider HERA operating at a centre-of-mass energy of √s=300 GeV. The rise of F 2 with decreasing x observed in the previous HERA measurements persists in this lower x and Q 2 range. The Q 2 evolution of F 2 , even at the lowest Q 2 and x measured, is consistent with perturbative QCD. (orig.)

Virtual Box

DEFF Research Database (Denmark)

Davis, Hilary; Skov, Mikael B.; Stougaard, Malthe

2007-01-01

. This paper reports on the design, implementation and initial evaluation of Virtual Box. Virtual Box attempts to create a physical and engaging context in order to support reciprocal interactions with expressive content. An implemented version of Virtual Box is evaluated in a location-aware environment...

Selected topics of deep inelastic scattering from the sixties to HERA

International Nuclear Information System (INIS)

Gayler, J.

1995-07-01

This talk reports on important steps in deep inelastic scattering, starting in the sixties before scaling violations were observed, and ending with most recent results from HERA. The selection is rather subjective and no systematic review was attempted. The emphasis is on structure functions, QCD effects in the hadronic final states and electroweak effects in electron scattering. (orig.)

Study of χc production using HERA-B data

International Nuclear Information System (INIS)

Aleksandrov, Aleksandar

2010-01-01

In this thesis the production of the charmonium states χ c1 and χ c2 in protonnucleus collisions at a proton-nucleon center-of-mass energy √(s)=41.6 GeV was studied. The data used for the analysis have been taken by the fixed-target experiment HERA-B that uses the HERA proton beam to scatter protons off the nuclei of different wire targets. About 122.10 3 recorded muonic J/ψ decays, J/ψ→μ + μ - , resulted in almost 10000 reconstructed χ c →J/ψγ. The ratio R χ c = sum i=1,2 σ(χ ci )Br(χ ci →J/ψγ)/σ(J/ψ), which is the ratio of J/ψ from χ c decays to all produced J/ψ, was measured in the kinematical range -0.35 F J/ψ χ c =0.190 -0.029 +0.030 . Despite the small separation of the masses of the two χ c states, comparable to the detector resolution, the ratio R 12 =R χ c1 /R χ c2 was measured yielding R 12 =1.30 -0.37 +0.59 which corresponds to a production cross section ratio (σ(χ c1 ))/(σ(χ c2 ))=0.74 -0.22 +0.34 . By using the known J/ψ production cross section, the χ c1 and χ c2 production cross sections are calculated to be σ(χ c1 )=(153±27) nb/nucleon and σ(χ c2 )=(207±39) nb/nucleon, respectively. All results were obtained under the assumption that both the J/ψ and χ c states are produced without polarization. In addition a study of possible deviations of R χ c and R 12 due to the polarization of J/ψ and χ c was performed. By varying the polarization parameter, λ obs , of all produced J/ψ by 2σ around the value measured by HERA-B, and assuming fully polarized χ c states, the maximum variations of R χ c and R 12 were evaluated. These studies show that R χ c could change up to 21% and R 12 from -11% to +16% relative to the values calculated without polarization. (orig.)

Measurement of the Proton Structure Function $F_{2}$ at low $Q^{2}$ in QED Compton Scattering at HERA

CERN Document Server

Aktas, A.; Anthonis, T.; Asmone, A.; Babaev, A.; Backovic, S.; Bahr, J.; Baranov, P.; Barrelet, E.; Bartel, W.; Baumgartner, S.; Becker, J.; Beckingham, M.; Behnke, O.; Behrendt, O.; Belousov, A.; Berger, Ch.; Berger, N.; Berndt, T.; Bizot, J.C.; Bohme, J.; Boenig, M.-O.; Boudry, V.; Bracinik, J.; Brisson, V.; Broker, H.-B.; Brown, D.P.; Bruncko, D.; Busser, F.W.; Bunyatyan, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Caron, S.; Cassol-Brunner, F.; Cerny, K.; Chekelian, V.; Collard, C.; Contreras, J.G.; Coppens, Y.R.; Coughlan, J.A.; Cox, B.E.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Dau, W.D.; Daum, K.; Delcourt, B.; Demirchyan, R.; De Roeck, A.; Desch, K.; De Wolf, E.A.; Diaconu, C.; Dingfelder, J.; Dodonov, V.; Dubak, A.; Duprel, C.; Eckerlin, Guenter; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Ellerbrock, M.; Elsen, E.; Erdmann, M.; Erdmann, W.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Felst, R.; Ferencei, J.; Fleischer, M.; Fleischmann, P.; Fleming, Y.H.; Flucke, G.; Flugge, G.; Fomenko, A.; Foresti, I.; Formanek, J.; Franke, G.; Frising, G.; Gabathuler, E.; Gabathuler, K.; Garutti, E.; Garvey, J.; Gayler, J.; Gerhards, R.; Gerlich, C.; Ghazaryan, Samvel; Goerlich, L.; Gogitidze, N.; Gorbounov, S.; Grab, C.; Grassler, H.; Greenshaw, T.; Gregori, M.; Grindhammer, Guenter; Gwilliam, C.; Haidt, D.; Hajduk, L.; Haller, J.; Hansson, M.; Heinzelmann, G.; Henderson, R.C.W.; Henschel, H.; Henshaw, O.; Heremans, R.; Herrera, G.; Herynek, I.; Heuer, R.-D.; Hildebrandt, M.; Hiller, K.H.; Hoting, P.; Hoffmann, D.; Horisberger, R.; Hovhannisyan, A.; Ibbotson, M.; Ismail, M.; Jacquet, M.; Janauschek, L.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, D.P.; Jung, H.; Kant, D.; Kapichine, M.; Karlsson, M.; Katzy, J.; Keller, N.; Kennedy, J.; Kenyon, I.R.; Kiesling, Christian M.; Klein, M.; Kleinwort, C.; Klimkovich, T.; Kluge, T.; Knies, G.; Knutsson, A.; Koblitz, B.; Korbel, V.; Kostka, P.; Koutouev, R.; Kropivnitskaya, A.; Kroseberg, J.; Kuckens, J.; Kuhr, T.; Landon, M.P.J.; Lange, W.; Lastovicka, T.; Laycock, P.; Lebedev, A.; Leiner, B.; Lemrani, R.; Lendermann, V.; Levonian, S.; Lindfeld, L.; Lipka, K.; List, B.; Lobodzinska, E.; Loktionova, N.; Lopez-Fernandez, R.; Lubimov, V.; Lueders, H.; Luke, D.; Lux, T.; Lytkin, L.; Makankine, A.; Malden, N.; Malinovski, E.; Mangano, S.; Marage, P.; Marks, J.; Marshall, R.; Martisikova, M.; Martyn, H.-U.; Maxfield, S.J.; Meer, D.; Mehta, A.; Meier, K.; Meyer, A.B.; Meyer, H.; Meyer, J.; Michine, S.; Mikocki, S.; Milcewicz-Mika, I.; Milstead, D.; Mohamed, A.; Moreau, F.; Morozov, A.; Morozov, I.; Morris, J.V.; Mozer, Matthias Ulrich; Muller, K.; Murin, P.; Nagovizin, V.; Naroska, B.; Naumann, J.; Naumann, Th.; Newman, Paul R.; Niebuhr, C.; Nikiforov, A.; Nikitin, D.; Nowak, G.; Nozicka, M.; Oganezov, R.; Olivier, B.; Olsson, J.E.; Ossoskov, G.; Ozerov, D.; Pascaud, C.; Patel, G.D.; Peez, M.; Perez, E.; Perieanu, A.; Petrukhin, A.; Pitzl, D.; Placakyte, R.; Poschl, R.; Portheault, B.; Povh, B.; Raicevic, N.; Ratiani, Z.; Reimer, P.; Reisert, B.; Rimmer, A.; Risler, C.; Rizvi, E.; Robmann, P.; Roland, B.; Roosen, R.; Rostovtsev, A.; Rurikova, Z.; Rusakov, S.; Rybicki, K.; Sankey, D.P.C.; Sauvan, E.; Schatzel, S.; Scheins, J.; Schilling, F.-P.; Schleper, P.; Schmidt, S.; Schmitt, S.; Schneider, M.; Schoeffel, L.; Schoning, A.; Schroder, V.; Schultz-Coulon, H.-C.; Schwanenberger, C.; Sedlak, K.; Sefkow, F.; Sheviakov, I.; Shtarkov, L.N.; Sirois, Y.; Sloan, T.; Smirnov, P.; Soloviev, Y.; South, D.; Spaskov, V.; Specka, Arnd E.; Spitzer, H.; Stamen, R.; Stella, B.; Stiewe, J.; Strauch, I.; Straumann, U.; Tchoulakov, V.; Thompson, Graham; Thompson, P.D.; Tomasz, F.; Traynor, D.; Truoel, Peter; Tsipolitis, G.; Tsurin, I.; Turnau, J.; Tzamariudaki, E.; Uraev, A.; Urban, Marcel; Usik, A.; Utkin, D.; Valkar, S.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Van Remortel, N.; Vargas Trevino, A.; Vazdik, Y.; Veelken, C.; Vest, A.; Vinokurova, S.; Volchinski, V.; Wacker, K.; Wagner, J.; Weber, G.; Weber, R.; Wegener, D.; Werner, C.; Werner, N.; Wessels, M.; Wessling, B.; Winter, G.-G.; Wissing, Ch.; Woehrling, E.-E.; Wolf, R.; Wunsch, E.; Xella, S.; Yan, W.; Yeganov, V.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhokin, A.; Zohrabyan, H.; Zomer, F.

2004-01-01

The proton structure function F_2(x,Q^2) is measured in inelastic QED Compton scattering using data collected with the H1 detector at HERA. QED Compton events are used to access the kinematic range of very low virtualities of the exchanged photon, Q^2, down to 0.5 GeV^2, and Bjorken x up to \\sim 0.06, a region which has not been covered previously by inclusive measurements at HERA. The results are in agreement with the measurements from fixed target lepton-nucleon scattering experiments.

The H1 forward proton spectrometer at HERA

International Nuclear Information System (INIS)

Esch, P. van; Kapichine, M.; Morozov, A.; Spaskov, V.; Bartel, W.; List, B.; Mahlke-Krueger, H.; Schroeder, V.; Wilksen, T.; Buesser, F.W.; Geske, K.; Karschnik, O.; Niebergall, F.; Riege, H.; Schuett, J.; Staa, R. van; Wittek, C.; Dau, D.; Newton, D.; Kotelnikov, S.K.; Lebedev, A.; Rusakov, S.; Astvatsatourov, A.; Baehr, J.; Harder, U.; Hiller, K.; Hoffmann, B.; Luedecke, H.; Nahnhauer, R.

2000-01-01

The forward proton spectrometer is part of the H1 detector at the HERA collider. Protons with energies above 500 GeV and polar angles below 1 mrad can be detected by this spectrometer. The main detector components are scintillating fiber detectors read out by position-sensitive photo-multipliers. These detectors are housed in the so-called Roman Pots which allow them to be moved close to the circulating proton beam. Four Roman Pot stations are located at distances between 60 and 90 m from the interaction point

The H1 forward proton spectrometer at HERA

Energy Technology Data Exchange (ETDEWEB)

Esch, P. van; Kapichine, M.; Morozov, A.; Spaskov, V.; Bartel, W.; List, B.; Mahlke-Krueger, H.; Schroeder, V.; Wilksen, T.; Buesser, F.W.; Geske, K.; Karschnik, O.; Niebergall, F.; Riege, H.; Schuett, J.; Staa, R. van; Wittek, C.; Dau, D.; Newton, D.; Kotelnikov, S.K.; Lebedev, A.; Rusakov, S.; Astvatsatourov, A.; Baehr, J.; Harder, U.; Hiller, K. E-mail: hiller@ifh.de; Hoffmann, B.; Luedecke, H.; Nahnhauer, R

2000-05-21

The forward proton spectrometer is part of the H1 detector at the HERA collider. Protons with energies above 500 GeV and polar angles below 1 mrad can be detected by this spectrometer. The main detector components are scintillating fiber detectors read out by position-sensitive photo-multipliers. These detectors are housed in the so-called Roman Pots which allow them to be moved close to the circulating proton beam. Four Roman Pot stations are located at distances between 60 and 90 m from the interaction point.

Microprocessor-based data acquisition systems for Hera experiments

International Nuclear Information System (INIS)

Haynes, W.J.

1989-09-01

Sophisticated multi-microprocessor configurations are envisaged to cope with the technical challenges of the HERA electron-proton collider and the high data rates from the two large experiments H1 and ZEUS. These lecture notes concentrate on many of the techniques employed, with much emphasis being placed on the use of the IEEE standard VMEbus as a unifying element. The role of modern 32-bit CISC and RISC microprocessors, in the handling of data and the filtering of physics information, is highlighted together with the integration of personal computer stations for monitoring and control. (author)

Beauty photoproduction using decays into electrons at HERA

Energy Technology Data Exchange (ETDEWEB)

Chekanov, S.; Derrick, M.; Magill, S. [Argonne National Laboratory, Argonne, IL (US)] (and others)

2008-05-15

Photoproduction of beauty quarks in events with two jets and an electron associated with one of the jets has been studied with the ZEUS detector at HERA using an integrated luminosity of 120 pb{sup -1}. The fractions of events containing b quarks, and also of events containing c quarks, were extracted from a likelihood fit using variables sensitive to electron identification as well as to semileptonic decays. Total and differential cross sections for beauty and charm production were measured and compared with next-to-leading-order QCD calculations and Monte Carlo models. (orig.)

Beauty photoproduction using decays into electrons at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2008-05-01

Photoproduction of beauty quarks in events with two jets and an electron associated with one of the jets has been studied with the ZEUS detector at HERA using an integrated luminosity of 120 pb -1 . The fractions of events containing b quarks, and also of events containing c quarks, were extracted from a likelihood fit using variables sensitive to electron identification as well as to semileptonic decays. Total and differential cross sections for beauty and charm production were measured and compared with next-to-leading-order QCD calculations and Monte Carlo models. (orig.)

Measurement of Deeply Virtual Compton Scattering at HERA

CERN Document Server

Adloff, C.; Andrieu, B.; Anthonis, T.; Arkadov, V.; Astvatsatourov, A.; Babaev, A.; Bahr, J.; Baranov, P.; Barrelet, E.; Bartel, W.; Bate, P.; Beglarian, A.; Behnke, O.; Beier, C.; Belousov, A.; Benisch, T.; Berger, Christoph; Berndt, T.; Bizot, J.C.; Boudry, V.; Braunschweig, W.; Brisson, V.; Broker, H.B.; Brown, D.P.; Bruckner, W.; Bruncko, D.; Burger, J.; Busser, F.W.; Bunyatyan, A.; Burrage, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Cao, Jun; Caron, S.; Clarke, D.; Clerbaux, B.; Collard, C.; Contreras, J.G.; Coppens, Y.R.; Coughlan, J.A.; Cousinou, M.C.; Cox, B.E.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Dau, W.D.; Daum, K.; Davidsson, M.; Delcourt, B.; Delerue, N.; Demirchyan, R.; De Roeck, A.; De Wolf, E.A.; Diaconu, C.; Dingfelder, J.; Dixon, P.; Dodonov, V.; Dowell, J.D.; Droutskoi, A.; Dubak, A.; Duprel, C.; Eckerlin, Guenter; Eckstein, D.; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Eisenhandler, E.; Ellerbrock, M.; Elsen, E.; Erdmann, M.; Erdmann, W.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Felst, R.; Ferencei, J.; Ferron, S.; Fleischer, M.; Fleming, Y.H.; Flugge, G.; Fomenko, A.; Foresti, I.; Formanek, J.; Foster, J.M.; Franke, G.; Gabathuler, E.; Gabathuler, K.; Garvey, J.; Gassner, J.; Gayler, Joerg; Gerhards, R.; Gerlich, C.; Ghazaryan, Samvel; Goerlich, L.; Gogitidze, N.; Goldberg, M.; Goodwin, C.; Grab, C.; Grassler, H.; Greenshaw, T.; Grindhammer, Guenter; Hadig, T.; Haidt, D.; Hajduk, L.; Haynes, W.J.; Heinemann, B.; Heinzelmann, G.; Henderson, R.C.W.; Hengstmann, S.; Henschel, H.; Heremans, R.; Herrera, G.; Herynek, I.; Hildebrandt, M.; Hilgers, M.; Hiller, K.H.; Hladky, J.; Hoting, P.; Hoffmann, D.; Horisberger, R.; Hurling, S.; Ibbotson, M.; Issever, C .; Jacquet, M.; Jaffre, M.; Janauschek, L.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, D.P.; Jones, M.A.S.; Jung, H.; Kastli, H.K.; Kant, D.; Kapichine, M.; Karlsson, M.; Karschnick, O.; Keil, F.; Keller, N.; Kennedy, J.; Kenyon, I.R.; Kermiche, S.; Kiesling, Christian M.; Kjellberg, P.; Klein, M.; Kleinwort, C.; Kluge, T.; Knies, G.; Koblitz, B.; Kolya, S.D.; Korbel, V.; Kostka, P.; Kotelnikov, S.K.; Koutouev, R.; Koutov, A.; Krehbiel, H.; Kroseberg, J.; Kruger, K.; Kupper, A.; Kuhr, T.; Kurca, T.; Lahmann, R.; Lamb, D.; Landon, M.P.J.; Lange, W.; Lastovicka, T.; Laycock, P.; Lebailly, E.; Lebedev, A.; Leissner, B.; Lemrani, R.; Lendermann, V.; Levonian, S.; Lindstroem, M.; List, B.; Lobodzinska, E.; Lobodzinski, B.; Loginov, A.; Loktionova, N.; Lubimov, V.; Luders, S.; Luke, D.; Lytkin, L.; Mahlke-Kruger, H.; Malden, N.; Malinovski, E.; Malinovski, I.; Maracek, R.; Marage, P.; Marks, J.; Marshall, R.; Martyn, H.U.; Martyniak, J.; Maxfield, S.J.; Meer, D.; Mehta, A.; Meier, K.; Meyer, A.B.; Meyer, H.; Meyer, J.; Meyer, P.O.; Mikocki, S.; Milstead, D.; Mkrtchyan, T.; Mohr, R.; Mohrdieck, S.; Mondragon, M.N.; Moreau, F.; Morozov, A.; Morris, J.V.; Muller, K.; Murin, P.; Nagovizin, V.; Naroska, B.; Naumann, J.; Naumann, T.; Nellen, G.; Newman, Paul R.; Nicholls, T.C.; Niebergall, F.; Niebuhr, C.; Nix, O.; Nowak, G.; Olsson, J.E.; Ozerov, D.; Panassik, V.; Pascaud, C.; Patel, G.D.; Peez, M.; Perez, E.; Phillips, J.P.; Pitzl, D.; Poschl, R.; Potachnikova, I.; Povh, B.; Rabbertz, K.; Radel, G.; Rauschenberger, J.; Reimer, P.; Reisert, B.; Reyna, D.; Risler, C.; Rizvi, E.; Robmann, P.; Roosen, R.; Rostovtsev, A.; Rusakov, S.; Rybicki, K.; Sankey, D.P.C.; Scheins, J.; Schilling, F.P.; Schleper, P.; Schmidt, D.; Schmidt, S.; Schmitt, S.; Schneider, M.; Schoeffel, L.; Schoning, A.; Schorner, T.; Schroder, V.; Schultz-Coulon, H.C.; Schwanenberger, C.; Sedlak, K.; Sefkow, F.; Chekelian, V.; Sheviakov, I.; Shtarkov, L.N.; Sirois, Y.; Sloan, T.; Smirnov, P.; Solovev, Y.; South, D.; Spaskov, V.; Specka, Arnd E.; Spitzer, H.; Stamen, R.; Stella, B.; Stiewe, J.; Straumann, U.; Swart, M.; Tasevsky, M.; Chernyshov, V.; Chetchelnitski, S.; Thompson, Graham; Thompson, P.D.; Tobien, N.; Traynor, D.; Truoel, Peter; Tsipolitis, G.; Tsurin, I.; Turnau, J.; Turney, J.E.; Tzamariudaki, E.; Udluft, S.; Urban, Marcel; Usik, A.; Valkar, S.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Vassilev, S.; Vazdik, Y.; Vichnevski, A.; Wacker, K.; Wallny, R.; Waugh, B.; Weber, G.; Weber, M.; Wegener, D.; Werner, C.; Werner, M.; Werner, N.; White, G.; Wiesand, S.; Wilksen, T.; Winde, M.; Winter, G.G.; Wissing, C.; Wobisch, M.; Wunsch, E.; Wyatt, A.C.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhokin, A.; Zomer, F.; Zsembery, J.; zur Nedden, M.

2001-01-01

A measurement is presented of elastic Deeply Virtual Compton Scattering e^+ + p -> e^+ + photon + p at HERA using data taken with the H1 detector. The cross section is measured as a function of the photon virtuality, Q^2, and the invariant mass, W, of the gamma p system, in the kinematic range 2 < Q^2 < 20 GeV^2, 30 < W < 120 GeV and |t| < 1 GeV^2, where t is the squared momentum transfer to the proton. The measurement is compared to QCD based calculations.

Heavy quark production in ep collisions at HERA

International Nuclear Information System (INIS)

Derrick, M.

1987-01-01

There are substantial production rates of heavy quarks from ep collisions at HERA. The center of mass energy of about 300 GeV is well above any b-quark threshold effects, and for b/bar b/ production, the cross section is estimated to be 3.3 nb per event, leading to rates approaching 10 6 b mesons per year. The rates for c/bar c/ production are about two orders of magnitude greater. Two major detectors are under construction and a program of heavy quark physics will start in 1990. 3 refs., 4 figs

Hydropower and Environmental Resource Assessment (HERA): a computational tool for the assessment of the hydropower potential of watersheds considering engineering and socio-environmental aspects.

Science.gov (United States)

Martins, T. M.; Kelman, R.; Metello, M.; Ciarlini, A.; Granville, A. C.; Hespanhol, P.; Castro, T. L.; Gottin, V. M.; Pereira, M. V. F.

2015-12-01

The hydroelectric potential of a river is proportional to its head and water flows. Selecting the best development alternative for Greenfield projects watersheds is a difficult task, since it must balance demands for infrastructure, especially in the developing world where a large potential remains unexplored, with environmental conservation. Discussions usually diverge into antagonistic views, as in recent projects in the Amazon forest, for example. This motivates the construction of a computational tool that will support a more qualified debate regarding development/conservation options. HERA provides the optimal head division partition of a river considering technical, economic and environmental aspects. HERA has three main components: (i) pre-processing GIS of topographic and hydrologic data; (ii) automatic engineering and equipment design and budget estimation for candidate projects; (iii) translation of division-partition problem into a mathematical programming model. By integrating an automatic calculation with geoprocessing tools, cloud computation and optimization techniques, HERA makes it possible countless head partition division alternatives to be intrinsically compared - a great advantage with respect to traditional field surveys followed by engineering design methods. Based on optimization techniques, HERA determines which hydro plants should be built, including location, design, technical data (e.g. water head, reservoir area and volume, engineering design (dam, spillways, etc.) and costs). The results can be visualized in the HERA interface, exported to GIS software, Google Earth or CAD systems. HERA has a global scope of application since the main input data area a Digital Terrain Model and water inflows at gauging stations. The objective is to contribute to an increased rationality of decisions by presenting to the stakeholders a clear and quantitative view of the alternatives, their opportunities and threats.

Mycobacterium tuberculosis DinG is a structure-specific helicase that unwinds G4 DNA: implications for targeting G4 DNA as a novel therapeutic approach.

Science.gov (United States)

Thakur, Roshan Singh; Desingu, Ambika; Basavaraju, Shivakumar; Subramanya, Shreelakshmi; Rao, Desirazu N; Nagaraju, Ganesh

2014-09-05

The significance of G-quadruplexes and the helicases that resolve G4 structures in prokaryotes is poorly understood. The Mycobacterium tuberculosis genome is GC-rich and contains >10,000 sequences that have the potential to form G4 structures. In Escherichia coli, RecQ helicase unwinds G4 structures. However, RecQ is absent in M. tuberculosis, and the helicase that participates in G4 resolution in M. tuberculosis is obscure. Here, we show that M. tuberculosis DinG (MtDinG) exhibits high affinity for ssDNA and ssDNA translocation with a 5' → 3' polarity. Interestingly, MtDinG unwinds overhangs, flap structures, and forked duplexes but fails to unwind linear duplex DNA. Our data with DNase I footprinting provide mechanistic insights and suggest that MtDinG is a 5' → 3' polarity helicase. Notably, in contrast to E. coli DinG, MtDinG catalyzes unwinding of replication fork and Holliday junction structures. Strikingly, we find that MtDinG resolves intermolecular G4 structures. These data suggest that MtDinG is a multifunctional structure-specific helicase that unwinds model structures of DNA replication, repair, and recombination as well as G4 structures. We finally demonstrate that promoter sequences of M. tuberculosis PE_PGRS2, mce1R, and moeB1 genes contain G4 structures, implying that G4 structures may regulate gene expression in M. tuberculosis. We discuss these data and implicate targeting G4 structures and DinG helicase in M. tuberculosis could be a novel therapeutic strategy for culminating the infection with this pathogen. © 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Study of the photon remnant in resolved photoproduction at HERA

International Nuclear Information System (INIS)

Derrick, M.; Krakauer, D.; Magill, S.

1995-01-01

Photoproduction at HERA is studied in ep collisions, with the ZEUS detector, for γp centre-of-mass energies ranging from 130-270 GeV. A sample of events with two high-p T jets (p T >6 GeV, η T with respect to the beam axis is measured to be 2.1±0.2 GeV, which demonstrates substantial mean transverse momenta for the photon remnant. (orig.)

A search for heavy leptons at HERA

Energy Technology Data Exchange (ETDEWEB)

Ahmed, T.; Aid, S.; Andreev, V.; Andrieu, B.; Appuhn, R.D.; Arpagaus, M.; Babaev, A.; Baehr, J.; Ban, J.; Baranov, P.; Barrelet, E.; Bartel, W.; Barth, M.; Bassler, U.; Beck, H.P.; Behrend, H.J.; Belousov, A.; Berger, C.; Bergstein, H.; Bernardi, G.; Bernet, R.; Bertrand-Coremans, G.; Besancon, M.; Biddulph, P.; Bizot, J.C.; Blobel, V.; Borras, K.; Botterweck, F.; Boudry, V.; Braemer, A.; Brasse, F.; Braunschweig, W.; Brisson, V.; Bruncko, D.; Brune, C.; Buchholz, R.; Buengener, L.; Buerger, J.; Buesser, F.W.; Buniatian, A.; Burke, S.; Buschhorn, G.; Campbell, A.J.; Carli, T.; Charles, F.; Clarke, D.; Clegg, A.B.; Colombo, M.; Contreras, J.B.; Coughlan, J.A.; Courau, A.; Coutures, C.; Cozzika, G.; Criegee, L.; Cussans, D.G.; Cvach, J.; Dagoret, S.; Dainton, J.B.; Danilov, M.; Dau, W.D.; Daum, K.; David, M.; Deffur, E.; Delcourt, B.; Del Buono, L.; Roeck, A. de; Wolf, E.A. de; Di Nezza, P.; Dollfus, C.; Dowell, J.D.; Dreis, H.B.; Duboc, J.; Duellmann, D.; Duenger, O.; Duhm, H.; Ebert, J.; Ebert, T.R.; Eckerlin, G.; Efremenko, V.; Egli, S.; Ehrlichmann, H.; Eichenberger, S.; Eichler, R.; Eisele, F.; Eisenhandler, E.; Ellison, R.J.; Elsen, E.; Erdmann, M.; Evrard, E.; Favart, L.; Fedotov, A.; Feeken, D.; Felst, R.; Feltesse, J.; Ferencei, J.; Ferrarotto, F.; Flamm, K.; Fleischer, M.; Flieser, M.; Fluegge, G.; Fomenko, A.; Fominykh, B.; Forbush, M.; Formanek, J.; Foster, J.M.; Franke, G.; Fretwurst, E.; Gabathuler, E.; Gabathuler, K.; Gamerdinger, K.; Garvey, J.; Gayler, J.; Gebauer, M.; Gellrich, A.; Genzel, H.; Gerhards, R.; Goerlach, U.; Goerlich, L.; Gogitidze, N.; Goldberg, M.; Goldner, D.; Gonzalez-Pineiro, B.; Goodall, A.M.; Gorelov, I.; Goritchev, P.; Grab, C.; Graessler, H.; Graessler, R.; Greenshaw, T.; Grindhammer, G.; Gruber, C.; Haack, J.; Haidt, D.; Hajduk, L.; Hamon, O.; Hampel, M.; Hanlon, E.M.; Hapke, M.; Haynes, W.J.; Heatherington, J.; Hedberg, V.; Heinzelmann, G.; Henderson, R.C.W.; Henschel, H.; Herma, R.; Herynek, I.; Hess, M.F.; H1 Collaboration

1994-08-01

A search for direct production of new leptons in the mass range from 10 GeV up to 225 GeV is presented by the H1 experiment at HERA. The data were obtained during 1993 and correspond to an integrated luminosity of 528 nb{sup -1}. The search includes heavy lepton decays to final states e({nu}){gamma} and e({nu})W, e({nu})Z with the subsequent decay of the W and Z bosons into jets or lepton pairs. No evidence was found for the production of new massive electrons or neutrinos in any of the decay channels. Rejection limits for excited electrons and neutrinos are derived. (orig.)

QCD coherence in deep inelastic scattering at small x at HERA

International Nuclear Information System (INIS)

Golec-Biernat, K.

1998-01-01

QCD coherence effects in initial state radiation at small x in deep inelastic scattering in HERA kinematics are studied with the help of the Monte Carlo model SMALLX. Theoretical assumptions based on the CCFM evolution equation are reviewed and the basic properties of the partonic final states are investigated. The results are compared with those obtained in the conventional DGLAP evolution scheme. (orig.)

S.C. correction coils and magnets for the HERA proton ring

International Nuclear Information System (INIS)

Daum, C.; Geerinck, J.; Schmueser, P.

1986-05-01

The quadrupole and sextupole correction coils of the HERA proton ring are mounted on the cold beam pipe inside the main dipole magnets. Superferric dipole magnets for orbit correction are located adjacent to the main quadrupole magnets in a common cryostat which also contains the beam monitor. The design, manufacture and performance of both types of correction elements are described. (orig.)

Observation of two-jet production in deep inelastic scattering at HERA

Science.gov (United States)

Derrick, M.; Krakauer, D.; Magill, S.; Musgrave, B.; Repond, J.; Repond, S.; Stanek, R.; Talaga, R. L.; Thron, J.; Arzarello, F.; Ayad, R.; Bari, G.; Basile, M.; Bellagamba, L.; Boscherini, D.; Bruni, A.; Bruni, G.; Bruni, P.; Cara Romeo, G.; Castellini, G.; Chiarini, M.; Cifarelli, L.; Cindolo, F.; Ciralli, F.; Contin, A.; D'Auria, S.; Del Papa, C.; Frasconi, F.; Giusti, P.; Iacobucci, G.; Laurenti, G.; Levi, G.; Lin, Q.; Lisowski, B.; Maccarrone, G.; Margotti, A.; Massam, T.; Nania, R.; Nemoz, C.; Palmonari, F.; Sartorelli, G.; Timellini, R.; Zamora Garcia, Y.; Zichichi, A.; Bargende, A.; Crittenden, J.; Dabbous, H.; Desch, K.; Diekmann, B.; Doeker, T.; Geerts, M.; Geitz, G.; Gutjahr, B.; Hartmann, H.; Haun, D.; Heinloth, K.; Hilger, E.; Jakob, H.-P.; Kramarczyk, S.; Kückes, M.; Mass, A.; Mengel, S.; Mollen, J.; Monaldi, D.; Müsch, H.; Paul, E.; Schattevoy, R.; Schneider, J.-L.; Wedemeyer, R.; Cassidy, A.; Cussans, D. G.; Dyce, N.; Fawcett, H. F.; Foster, B.; Gilmore, R.; Heath, G. P.; Lancaster, M.; Llewellyn, T. J.; Malos, J.; Morgado, C. J. S.; Tapper, R. J.; Wilson, S. S.; Rau, R. R.; Arneodo, M.; Barillari, T.; Schioppa, M.; Susinno, G.; Bernstein, A.; Caldwell, A.; Gialas, I.; Parsons, J. A.; Ritz, S.; Sciulli, F.; Straub, P. B.; Wai, L.; Yang, S.; Chwastowski, J.; Dwuraźny, A.; Eskreys, A.; Jakubowski, Z.; Niziom̵, B.; Piotrzkowski, K.; Zachara, M.; Zawiejski, L.; Bednarek, B.; Borzemski, P.; Eskreys, K.; Jeleń, K.; Kisielewska, D.; Kowalski, T.; Rulikowska-Zarȩbska, E.; Suszycki, L.; Zajaç, J.; Kȩdzierski, T.; Kotański, A.; Przybycień, M.; Bauerdick, L. A. T.; Behrens, U.; Bienlein, J. K.; Coldewey, C.; Dannemann, A.; Drews, G.; Erhard, P.; Flasiński, M.; Fleck, I.; Gläser, R.; Göttlicher, P.; Haas, T.; Hagge, L.; Hain, W.; Hasell, D.; Hultschig, H.; Jahnen, G.; Joos, P.; Kasemann, M.; Klanner, R.; Koch, W.; Kötz, U.; Kowalski, H.; Krüger, J.; Labs, J.; Ladage, A.; Löhr, B.; Löwe, M.; Lüke, D.; Mainusch, J.; Manczak, O.; Momayezi, M.; Ng, J. S. T.; Nickel, S.; Notz, D.; Park, I. H.; Pösnecker, K.-U.; Rohde, M.; Roldán, J.; Ros, E.; Schneekloth, U.; Schroeder, J.; Schulz, W.; Selonke, F.; Stiliaris, E.; Tscheslog, E.; Tsurugai, T.; Turkot, F.; Vogel, W.; Wolf, G.; Youngman, C.; Grabosch, H. J.; Leich, A.; Meyer, A.; Rethfeldt, C.; Schlenstedt, S.; Barbagli, G.; Francescato, A.; Nuti, M.; Pelfer, P.; Anzivino, G.; Casaccia, R.; De Pasquale, S.; Qian, S.; Votano, L.; Bamberger, A.; Freidhof, A.; Poser, T.; Söldner-Rembold, S.; Theisen, G.; Trefzger, T.; Brook, N. H.; Bussey, P. J.; Doyle, A. T.; Forbes, J. R.; Jamieson, V. A.; Raine, C.; Saxon, D. H.; Brückmann, H.; Gloth, G.; Holm, U.; Kammerlocher, H.; Krebs, B.; Neumann, T.; Wick, K.; Fürtjes, A.; Kröger, W.; Lohrmann, E.; Milewski, J.; Nakahata, M.; Pavel, N.; Poelz, G.; Seidman, A.; Schott, W.; Terron, J.; Wiik, B. H.; Zetsche, F.; Bacon, T. C.; Butterworth, I.; Markou, C.; McQuillan, D.; Miller, D. B.; Mobayyen, M. M.; Prinias, A.; Vorvolakos, A.; Bienz, T.; Kreutzmann, H.; Mallik, U.; McCliment, E.; Roco, M.; Wang, M. Z.; Cloth, P.; Filges, D.; Chen, L.; Imlay, R.; Kartik, S.; Kim, H.-J.; McNeil, R. R.; Metcalf, W.; Barreiro, F.; Cases, G.; Hervás, L.; Labarga, L.; del Peso, J.; de Trocóniz, J. F.; Ikraiam, F.; Mayer, J. K.; Smith, G. R.; Corriveau, F.; Gilkinson, D. J.; Hanna, D. S.; Hartmann, J.; Hung, L. W.; Lim, J. N.; Meijer Drees, R.; Mitchell, J. W.; Patel, P. M.; Sinclair, L. E.; Stairs, D. G.; Ullmann, R.; Bashindzhagyan, G. L.; Ermolov, P. F.; Gladilin, L. K.; Golubkov, Y. A.; Kuzmin, V. A.; Kuznetsov, E. N.; Savin, A. A.; Voronin, A. G.; Zotov, N. P.; Bentvelsen, S.; Botje, M.; Dake, A.; Engelen, J.; de Jong, P.; de Kamps, M.; Kooijman, P.; Kruse, A.; van der Lugt, H.; O'Dell, V.; Tenner, A.; Tiecke, H.; Uijterwaal, H.; Vreeswijk, M.; Wiggers, L.; de Wolf, E.; van Woudenberg, R.; Yoshida, R.; Bylsma, B.; Durkin, L. S.; Honscheid, K.; Li, C.; Ling, T. Y.; McLean, K. W.; Murray, W. N.; Park, S. K.; Romanowski, T. A.; Seidlein, R.; Blair, G. A.; Byrne, A.; Cashmore, R. J.; Cooper-Sarkar, A. M.; Devenish, R. C. E.; Gingrich, D. M.; Hallam-Baker, P. M.; Harnew, N.; Khatri, T.; Long, K. R.; Luffman, P.; McArthur, I.; Morawitz, P.; Nash, J.; Smith, S. J. P.; Roocroft, N. C.; Wilson, F. F.; Abbiendi, G.; Brugnera, R.; Carlin, R.; Dal Corso, F.; De Giorgi, M.; Dosselli, U.; Gasparini, F.; Limentani, S.; Morandin, M.; Posocco, M.; Stanco, L.; Stroili, R.; Voci, C.; Butterworth, J. M.; Bulmahn, J.; Field, G.; Oh, B. Y.; Whitmore, J.; Contino, U.; D'Agostini, G.; Guida, M.; Iori, M.; Mari, S. M.; Marini, G.; Mattioli, M.; Nigro, A.; Hart, J. C.; McCubbin, N. A.; Prytz, K.; Shah, T. P.; Short, T. L.; Barberis, E.; Cartiglia, N.; Heusch, C.; Hubbard, B.; Leslie, J.; Lockman, W.; O'Shaughnessy, K.; Sadrozinski, H. F.; Seiden, A.; Badura, E.; Biltzinger, J.; Chaves, H.; Rost, M.; Seifert, R. J.; Walenta, A. H.; Weihs, W.; Zech, G.; Dagan, S.; Levy, A.; Zer-Zion, D.; Hasegawa, T.; Hazumi, M.; Ishii, T.; Kasai, S.; Kuze, M.; Nagasawa, Y.; Nakao, M.; Okuno, H.; Tokushuku, K.; Watanabe, T.; Yamada, S.; Chiba, M.; Hamatsu, R.; Hirose, T.; Kitamura, S.; Nagayama, S.; Nakamitsu, Y.; Cirio, R.; Costa, M.; Ferrero, M. I.; Lamberti, L.; Maselli, S.; Peroni, C.; Solano, A.; Staiano, A.; Dardo, M.; Bailey, D. C.; Bandyopadhyay, D.; Benard, F.; Bhadra, S.; Brkic, M.; Burow, B. D.; Chlebana, F. S.; Crombie, M. B.; Hartner, G. F.; Levman, G. M.; Martin, J. F.; Orr, R. S.; Prentice, J. D.; Sampson, C. R.; Stairs, G. G.; Teuscher, R. J.; Yoon, T.-S.; Bullock, F. W.; Catterall, C. D.; Giddings, J. C.; Jones, T. W.; Khan, A. M.; Lane, J. B.; Makkar, P. L.; Shaw, D.; Shulman, J.; Blankenship, K.; Gibaut, D. B.; Kochocki, J.; Lu, B.; Mo, L. W.; Charchum̵a, K.; Ciborowski, J.; Gajewski, J.; Grzelak, G.; Kasprzak, M.; Krzyżanowski, M.; Muchorowski, K.; Nowak, R. J.; Pawlak, J. M.; Stopczyński, A.; Tymieniecka, T.; Walczak, R.; Wróblewski, A. K.; Zakrzewski, J. A.; Żarnecki, A. F.; Adamus, M.; Abramowicz, H.; Eisenberg, Y.; Glasman, C.; Karshon, U.; Montag, A.; Revel, D.; Shapira, A.; Foudas, C.; Fordham, C.; Loveless, R. J.; Goussiou, A.; Ali, I.; Behrens, B.; Dasu, S.; Reeder, D. D.; Smith, W. H.; Silverstein, S.; Frisken, W. R.; Furutani, K. M.; Iga, Y.; ZEUS Collaboration

1993-05-01

A sample of events with two distinct jets, in addition to the proton remnant, has been identified in deep inelastic, neutral current ep interactions recorded at HERA by the ZEUS experiment. For these events, the mass of the hadronic system ranges from 40 to 260 GeV. The salient features of the observed jet production agree with the predictions of higher order QCD.

Measurement of the longitudinal proton structure function at HERA

Energy Technology Data Exchange (ETDEWEB)

Chekanov, S.; Derrick, M.; Magill, S. [Argonne National Laboratory, Argonne, IL (US)] (and others)

2009-03-15

The reduced cross sections for ep deep inelastic scattering have been measured with the ZEUS detector at HERA at three different centre-of-mass energies, 318, 251 and 225 GeV. From the cross sections, measured double differentially in Bjorken x and the virtuality, Q{sup 2}, the proton structure functions F{sub L} and F{sub 2} have been extracted in the region 5 x 10{sup -4}

Human Events Reference for ATHEANA (HERA) Database Description and Preliminary User's Manual

Energy Technology Data Exchange (ETDEWEB)

Auflick, J.L.

1999-08-12

The Technique for Human Error Analysis (ATHEANA) is a newly developed human reliability analysis (HRA) methodology that aims to facilitate better representation and integration of human performance into probabilistic risk assessment (PRA) modeling and quantification by analyzing risk-significant operating experience in the context of existing behavioral science models. The fundamental premise of ATHEANA is that error forcing contexts (EFCs), which refer to combinations of equipment/material conditions and performance shaping factors (PSFs), set up or create the conditions under which unsafe actions (UAs) can occur. Because ATHEANA relies heavily on the analysis of operational events that have already occurred as a mechanism for generating creative thinking about possible EFCs, a database (db) of analytical operational events, called the Human Events Reference for ATHEANA (HERA), has been developed to support the methodology. This report documents the initial development efforts for HERA.

Review of searches for rare processes and physics beyond the Standard Model at HERA

International Nuclear Information System (INIS)

South, David M.; Turcato, Monica

2016-01-01

The electron-proton collisions collected by the H1 and ZEUS experiments at HERA comprise a unique particle physics data set, and a comprehensive range of measurements has been performed to provide new insight into the structure of the proton. The high centre of mass energy at HERA has also allowed rare processes to be studied, including the production of W and Z 0 bosons and events with multiple leptons in the final state. The data have also opened up a new domain to searches for physics beyond the Standard Model including contact interactions, leptoquarks, excited fermions and a number of supersymmetric models. This review presents a summary of such results, where the analyses reported correspond to an integrated luminosity of up to 1 fb -1 , representing the complete data set recorded by the H1 and ZEUS experiments. (orig.)

The HERMES polarized hydrogen and deuterium gas target in the HERA electron storage ring

International Nuclear Information System (INIS)

Airapetian, A.; Akopov, N.; Akopov, Z.

2005-01-01

The HERMES hydrogen and deuterium nuclear-polarized gas targets have been in use since 1996 with the polarized electron beam of HERA at DESY to study the spin structure of the nucleon. Polarized atoms from a Stern-Gerlach Atomic Beam Source are injected into a storage cell internal to the HERA electron ring. Atoms diffusing from the center of the storage cell into a side tube are analyzed to determine the atomic fraction and the atomic polarizations. The atoms have a nuclear polarization, the axis of which is defined by an external magnetic holding field. The holding field was longitudinal during 1996-2000, and was changed to transverse in 2001. The design of the target is described, the method for analyzing the target polarization is outlined, and the performance of the target in the various running periods is presented

The HERMES polarized hydrogen and deuterium gas target in the HERA electron storage ring

International Nuclear Information System (INIS)

Airapetian, A.; Akopov, N.; Akopov, Z.; Peking University, Beijing

2004-08-01

The HERMES hydrogen and deuterium nuclear-polarized gas targets have been in use since 1996 with the polarized electron beam of HERA at DESY to study the spin structure of the nucleon. Polarized atoms from a Stern-Gerlach Atomic Beam Source are injected into a storage cell internal to the HERA electron ring. Atoms diffusing from the center of the storage cell into a side tube are analyzed to determine the atomic fraction and the atomic polarizations. The atoms have a nuclear polarization, the axis of which is defined by an external magnetic holding field. The holding field was longitudinal during 1996-2000, and was changed to transverse in 2001. The design of the target is described, the method for analyzing the target polarization is outlined, and the performance of the target in the various running periods is presented. (orig.)

Human regulator of telomere elongation helicase 1 (RTEL1) is required for the nuclear and cytoplasmic trafficking of pre-U2 RNA

OpenAIRE

Schertzer , Michael; Jouravleva , Karina; Perderiset , Mylène; Dingli , Florent; Loew , Damarys; Le Guen , Tangui; Bardoni , Barbara; De Villartay , Jean-Pierre; Revy , Patrick; Londono-Vallejo , Arturo

2015-01-01

International audience; Hoyeraal-Hreidarsson syndrome (HHS) is a severe form of Dyskeratosis congenita characterized by developmental defects, bone marrow failure and im-munodeficiency and has been associated with telom-ere dysfunction. Recently, mutations in Regulator of Telomere ELongation helicase 1 (RTEL1), a helicase first identified in Mus musculus as being responsible for the maintenance of long telomeres, have been identified in several HHS patients. Here we show that RTEL1 is require...

A Small Molecule Inhibitor of the BLM Helicase Modulates Chromosome Stability in Human Cells

DEFF Research Database (Denmark)

Nguyen, Giang Huong; Dexheimer, Thomas S; Rosenthal, Andrew S

2013-01-01

The Bloom's syndrome protein, BLM, is a member of the conserved RecQ helicase family. Although cell lines lacking BLM exist, these exhibit progressive genomic instability that makes distinguishing primary from secondary effects of BLM loss problematic. In order to be able to acutely disable BLM f...

Interaction between the helicases genetically linked to Fanconi anemia group J and Bloom's syndrome

DEFF Research Database (Denmark)

Suhasini, Avvaru N; Rawtani, Nina A; Wu, Yuliang

2011-01-01

Bloom's syndrome (BS) and Fanconi anemia (FA) are autosomal recessive disorders characterized by cancer and chromosomal instability. BS and FA group J arise from mutations in the BLM and FANCJ genes, respectively, which encode DNA helicases. In this work, FANCJ and BLM were found to interact...

TFIIH with inactive XPD helicase functions in transcription initiation but is defective in DNA repair

NARCIS (Netherlands)

G.S. Winkler (Sebastiaan); U. Fiedler; W. Vermeulen (Wim); F. Coin (Frédéric); R.D. Wood (Richard); H.T.M. Timmers (Marc); G. Weeda (Geert); J.H.J. Hoeijmakers (Jan); S.J. Araú jo; J-M. Egly (Jean-Marc)

2000-01-01

textabstractTFIIH is a multisubunit protein complex involved in RNA polymerase II transcription and nucleotide excision repair, which removes a wide variety of DNA lesions including UV-induced photoproducts. Mutations in the DNA-dependent ATPase/helicase subunits of TFIIH, XPB and

Combined inclusive diffractive cross sections measured with forward proton spectrometers at HERA

International Nuclear Information System (INIS)

Ruspa, Marta

2013-01-01

A combination is presented of the inclusive diffractive cross section measurements made by the H1 and ZEUS Collaborations at HERA. The analysis uses samples of diffractive deep inelastic scattering data where leading protons are detected by dedicated spectrometers. Correlations of systematic uncertainties are taken into account by the combination method, resulting in improved precision.

Combined inclusive diffractive cross sections measured with forward proton spectrometers at HERA

Energy Technology Data Exchange (ETDEWEB)

Ruspa, Marta [Univ. Piemonte Orientale, via Solaroli 17, 28100 Novara (Italy); Collaboration: H1 Collaboration; ZEUS Collaboration

2013-04-15

A combination is presented of the inclusive diffractive cross section measurements made by the H1 and ZEUS Collaborations at HERA. The analysis uses samples of diffractive deep inelastic scattering data where leading protons are detected by dedicated spectrometers. Correlations of systematic uncertainties are taken into account by the combination method, resulting in improved precision.

Measurement of charm in charged current at HERA

International Nuclear Information System (INIS)

Zimmermann, Tobias

2008-12-01

A measurement of charm production in charged current (CC) polarized electron-proton deep inelastic scattering processes with data from the H1 detector at the HERA collider is presented. This process in principle allows access to the strange quark density in the proton. In total 5460 CC candidate events in e + p and 6253 in e - p data are selected in the kinematic range Q 2 >223 GeV 2 and 0.03 CC =(28.9± 1.4)+P e .(28.6±4.7) pb for e + p and σ CC =(49.2±2.3)-P e .(42.5 ±6.8) pb for e - p, where P e is the lepton beam polarization. While the measured cross section for e + p data is in agreement with the theoretical prediction, the cross section for e - p data shows a weaker dependence on P e than predicted. The charm fractions in the selected CC candidate event samples are extracted using the muon charge asymmetry. Muons originating from charmed hadron decays in CC events at HERA always have the same charge as the beam lepton. The extracted charm fractions in the selected CC candidate event samples are F c =9.5±8.9±3.0 % for e + p and F c =4.4±6.9±2.6 % for e - p. Due to the large statistical errors of the measured charm fractions, the strange quark density in the proton has not been extracted. (orig.)

Nucleolin inhibits G4 oligonucleotide unwinding by Werner helicase.

Directory of Open Access Journals (Sweden)

Fred E Indig

Full Text Available The Werner protein (WRNp, a member of the RecQ helicase family, is strongly associated with the nucleolus, as is nucleolin (NCL, an important nucleolar constituent protein. Both WRNp and NCL respond to the effects of DNA damaging agents. Therefore, we have investigated if these nuclear proteins interact and if this interaction has a possible functional significance in DNA damage repair.Here we report that WRNp interacts with the RNA-binding protein, NCL, based on immunoprecipitation, immunofluorescent co-localization in live and fixed cells, and direct binding of purified WRNp to nucleolin. We also map the binding region to the C-terminal domains of both proteins. Furthermore, treatment of U2OS cells with 15 µM of the Topoisomerase I inhibitor, camptothecin, causes the dissociation of the nucleolin-Werner complex in the nucleolus, followed by partial re-association in the nucleoplasm. Other DNA damaging agents, such as hydroxyurea, Mitomycin C, and aphidicolin do not have these effects. Nucleolin or its C-terminal fragment affected the helicase, but not the exonuclease activity of WRNp, by inhibiting WRN unwinding of G4 tetraplex DNA structures, as seen in activity assays and electrophoretic mobility shift assays (EMSA.These data suggest that nucleolin may regulate G4 DNA unwinding by WRNp, possibly in response to certain DNA damaging agents. We postulate that the NCL-WRNp complex may contain an inactive form of WRNp, which is released from the nucleolus upon DNA damage. Then, when required, WRNp is released from inhibition and can participate in the DNA repair processes.

Alignment of the HERA-B RICH optical system with data

International Nuclear Information System (INIS)

Gorisek, A.; Krizan, P.; Korpar, S.; Staric, M.

1999-01-01

We present a method for alignment of the mirror segments in the Ring Image Cherenkov Counter of the HERA-B spectrometer. The method will use recorded data, and was tested by using simulated events. The study shows that the mirrors can be aligned accurately enough to make the corresponding error in Cherenkov angle measurement negligible compared to other contributions. The mirrors are aligned relative to one mirror segment which can be chosen arbitrarily

Study of charm production at HERA using the ZEUS detector

International Nuclear Information System (INIS)

Woudenberg, R. van.

1995-01-01

The subject of this thesis is charm production at HERA, especially in photoproduction (Q 2 ∼0). In lowest order, the production of heavy quarks proceeds via photo-gluon fusion. Thus a measurement of charm production provides a handle on the gluon structure of the proton. (Leading and next-to-leading order processes together result in a total cross section of σ(ep→ec anti cX)≅O(1.0 μb)). (orig./HSI)

Nanomechanical microcantilever operated in vibration modes with use of RNA aptamer as receptor molecules for label-free detection of HCV helicase.

Science.gov (United States)

Hwang, Kyo Seon; Lee, Sang-Myung; Eom, Kilho; Lee, Jeong Hoon; Lee, Yoon-Sik; Park, Jung Ho; Yoon, Dae Sung; Kim, Tae Song

2007-11-30

We report the nanomechanical microcantilevers operated in vibration modes (oscillation) with use of RNA aptamers as receptor molecules for label-free detection of hepatitis C virus (HCV) helicase. The nanomechanical detection principle is that the ligand-receptor binding on the microcantilever surface induces the dynamic response change of microcantilevers. We implemented the label-free detection of HCV helicase in the low concentration as much as 100 pg/ml from measuring the dynamic response change of microcantilevers. Moreover, from the recent studies showing that the ligand-receptor binding generates the surface stress on the microcantilever, we estimate the surface stress, on the oscillating microcantilevers, induced by ligand-receptor binding, i.e. binding between HCV helicase and RNA aptamer. In this article, it is suggested that the oscillating microcantilevers with use of RNA aptamers as receptor molecules may enable one to implement the sensitive label-free detection of very small amount of small-scale proteins.

Requirement for the E1 Helicase C-Terminal Domain in Papillomavirus DNA Replication In Vivo.

Science.gov (United States)

Bergvall, Monika; Gagnon, David; Titolo, Steve; Lehoux, Michaël; D'Abramo, Claudia M; Melendy, Thomas; Archambault, Jacques

2016-01-06

The papillomavirus (PV) E1 helicase contains a conserved C-terminal domain (CTD), located next to its ATP-binding site, whose function in vivo is still poorly understood. The CTD is comprised of an alpha helix followed by an acidic region (AR) and a C-terminal extension termed the C-tail. Recent biochemical studies on bovine papillomavirus 1 (BPV1) E1 showed that the AR and C-tail regulate the oligomerization of the protein into a double hexamer at the origin. In this study, we assessed the importance of the CTD of human papillomavirus 11 (HPV11) E1 in vivo, using a cell-based DNA replication assay. Our results indicate that combined deletion of the AR and C-tail drastically reduces DNA replication, by 85%, and that further truncation into the alpha-helical region compromises the structural integrity of the E1 helicase domain and its interaction with E2. Surprisingly, removal of the C-tail alone or mutation of highly conserved residues within the domain still allows significant levels of DNA replication (55%). This is in contrast to the absolute requirement for the C-tail reported for BPV1 E1 in vitro and confirmed here in vivo. Characterization of chimeric proteins in which the AR and C-tail from HPV11 E1 were replaced by those of BPV1 indicated that while the function of the AR is transferable, that of the C-tail is not. Collectively, these findings define the contribution of the three CTD subdomains to the DNA replication activity of E1 in vivo and suggest that the function of the C-tail has evolved in a PV type-specific manner. While much is known about hexameric DNA helicases from superfamily 3, the papillomavirus E1 helicase contains a unique C-terminal domain (CTD) adjacent to its ATP-binding site. We show here that this CTD is important for the DNA replication activity of HPV11 E1 in vivo and that it can be divided into three functional subdomains that roughly correspond to the three conserved regions of the CTD: an alpha helix, needed for the structural

Requirement for the E1 Helicase C-Terminal Domain in Papillomavirus DNA Replication In Vivo

Science.gov (United States)

Bergvall, Monika; Gagnon, David; Titolo, Steve; Lehoux, Michaël; D'Abramo, Claudia M.

2016-01-01

ABSTRACT The papillomavirus (PV) E1 helicase contains a conserved C-terminal domain (CTD), located next to its ATP-binding site, whose function in vivo is still poorly understood. The CTD is comprised of an alpha helix followed by an acidic region (AR) and a C-terminal extension termed the C-tail. Recent biochemical studies on bovine papillomavirus 1 (BPV1) E1 showed that the AR and C-tail regulate the oligomerization of the protein into a double hexamer at the origin. In this study, we assessed the importance of the CTD of human papillomavirus 11 (HPV11) E1 in vivo, using a cell-based DNA replication assay. Our results indicate that combined deletion of the AR and C-tail drastically reduces DNA replication, by 85%, and that further truncation into the alpha-helical region compromises the structural integrity of the E1 helicase domain and its interaction with E2. Surprisingly, removal of the C-tail alone or mutation of highly conserved residues within the domain still allows significant levels of DNA replication (55%). This is in contrast to the absolute requirement for the C-tail reported for BPV1 E1 in vitro and confirmed here in vivo. Characterization of chimeric proteins in which the AR and C-tail from HPV11 E1 were replaced by those of BPV1 indicated that while the function of the AR is transferable, that of the C-tail is not. Collectively, these findings define the contribution of the three CTD subdomains to the DNA replication activity of E1 in vivo and suggest that the function of the C-tail has evolved in a PV type-specific manner. IMPORTANCE While much is known about hexameric DNA helicases from superfamily 3, the papillomavirus E1 helicase contains a unique C-terminal domain (CTD) adjacent to its ATP-binding site. We show here that this CTD is important for the DNA replication activity of HPV11 E1 in vivo and that it can be divided into three functional subdomains that roughly correspond to the three conserved regions of the CTD: an alpha helix, needed

Mycobacterium smegmatis Lhr Is a DNA-dependent ATPase and a 3'-to-5' DNA translocase and helicase that prefers to unwind 3'-tailed RNA:DNA hybrids.

Science.gov (United States)

Ordonez, Heather; Shuman, Stewart

2013-05-17

We are interested in the distinctive roster of helicases of Mycobacterium, a genus of the phylum Actinobacteria that includes the human pathogen Mycobacterium tuberculosis and its avirulent relative Mycobacterium smegmatis. Here, we identify and characterize M. smegmatis Lhr as the exemplar of a novel clade of superfamily II helicases, by virtue of its biochemical specificities and signature domain organization. Lhr is a 1507-amino acid monomeric nucleic acid-dependent ATPase that uses the energy of ATP hydrolysis to drive unidirectional 3'-to-5' translocation along single strand DNA and to unwind duplexes en route. The ATPase is more active in the presence of calcium than magnesium. ATP hydrolysis is triggered by either single strand DNA or single strand RNA, yet the apparent affinity for a DNA activator is 11-fold higher than for an RNA strand of identical size and nucleobase sequence. Lhr is 8-fold better at unwinding an RNA:DNA hybrid than it is at displacing a DNA:DNA duplex of identical nucleobase sequence. The truncated derivative Lhr-(1-856) is an autonomous ATPase, 3'-to-5' translocase, and RNA:DNA helicase. Lhr-(1-856) is 100-fold better RNA:DNA helicase than DNA:DNA helicase. Lhr homologs are found in bacteria representing eight different phyla, being especially prevalent in Actinobacteria (including M. tuberculosis) and Proteobacteria (including Escherichia coli).

The proton collimation system of HERA

International Nuclear Information System (INIS)

Seidel, M.

1994-06-01

This thesis is concerned with the two stage collimation system in HERA-p which is supposed to suppress this kind of background. The HERA-p collimation system consists of 12 movable tungsten jaws at three locations in the ring. A manual operation of the system is therefore rather time consuming, but also dangerous in the case of an operational mistake. The development of partially automised controls for the system is therefore an important topic of this thesis as well. In order to control the precise positioning of the jaws at the beam edge the induced hadronic showers are monitored immediately downstream the collimators. Small PIN-diode based shower detectors are used for this purpose. A detailed analysis of these shower rates turned out to be a sensitive source of information on the beam. A large section of the thesis is therefore concerned with the diagnostic possibilities of collimators in a proton machine. A passive method for the determination of the machine acceptance is presented. A second topic is the determination of diffusion rates in the beam halo. A stepwise movement of a beam limiting collimator jaw induces relaxation processes in the beam halo. From an analysis of the transient time evolution of the loss rates after the movement one can determine the diffusion coefficient in the beam halo. A completely new method is the frequency analysis of the halo induced shower rates. If the beam oscillates it scrapes periodically at the collimator which results in a modulation of the measured loss rates. The method allows measurements of slow orbit oscillations in the range of some μm. In the last section of the thesis the diffusion of halo protons as a result of beam-beam interaction is investigated. A little collection of diffusion measurements as a function of particle amplitude is presented. With the help of tracking simulations it is demonstrated that diffusion rates of the observed size can be generated by a certain modulation of the betatron frequency

Measurement of heavy-quark jet photoproduction at HERA

International Nuclear Information System (INIS)

Abramowicz, H.; Abt, I.; Adamczyk, L.

2011-04-01

Photoproduction of beauty and charm quarks in events with at least two jets has been measured with the ZEUS detector at HERA using an integrated luminosity of 133 pb -1 . The fractions of jets containing b and c quarks were extracted using the invariant mass of charged tracks associated with secondary vertices and the decay-length significance of these vertices. Differential cross sections as a function of jet transverse momentum, p jet T , and pseudorapidity, η jet , were measured. The data are compared with previous measurements and are well described by next-to-leading-order QCD predictions. (orig.)

Measurement of heavy-quark jet photoproduction at HERA

Energy Technology Data Exchange (ETDEWEB)

Abramowicz, H. [Tel Aviv Univ. (Israel). School of Physics; Max-Planck-Institute for Physics, Munich (Germany); Abt, I. [Max-Planck-Institute for Physics, Munich (Germany); Adamczyk, L. [AGH-Univ. of Science and Technology, Cracow (PL). Faculty of Physics and Applied Computer Science] (and others)

2011-04-15

Photoproduction of beauty and charm quarks in events with at least two jets has been measured with the ZEUS detector at HERA using an integrated luminosity of 133 pb{sup -1}. The fractions of jets containing b and c quarks were extracted using the invariant mass of charged tracks associated with secondary vertices and the decay-length significance of these vertices. Differential cross sections as a function of jet transverse momentum, p{sup jet}{sub T}, and pseudorapidity, {eta}{sup jet}, were measured. The data are compared with previous measurements and are well described by next-to-leading-order QCD predictions. (orig.)

High-spin research with HERA [High Energy-Resolution Array

International Nuclear Information System (INIS)

Diamond, R.M.

1987-06-01

The topic of this report is high spin research with the High Energy Resolution Array (HERA) at Lawrence Berkeley Laboratory. This is a 21 Ge detector system, the first with bismuth germanate (BGO) Compton suppression. The array is described briefly and some of the results obtained during the past year using this detector facility are discussed. Two types of studies are described: observation of superdeformation in the light Nd isotopes, and rotational damping at high spin and excitation energy in the continuum gamma ray spectrum

The spectrometer system for measuring ZEUS luminosity at HERA

International Nuclear Information System (INIS)

Helbich, M.; Ning, Y.; Paganis, S.; Ren, Z.; Schmidke, W.B.; Sciulli, F.; Schneekloth, U.; Buettner, C.; Caldwell, A.; Sutiak, J.

2006-01-01

The upgrade of the HERA accelerator has provided much increased collider luminosity. In turn, the improvements have necessitated a new design for the ZEUS luminosity measurements. The intense synchrotron radiation field, as well as the high probability of a bremsstrahlung photon in each bunch crossing, posed new experimental constraints. In this report, we describe how these challenges were met with the ZEUS luminosity spectrometer system. The design, testing and commissioning of the device are described, and the results from the initial operational experience are reported

POLARIZED BEAMS: 1 - Longitudinal electron spin polarization at HERA

Energy Technology Data Exchange (ETDEWEB)

Anon.

1994-09-15

Wednesday 4 May marked a turning point in the art of the manipulation of spins in electron storage rings: longitudinal electron spin polarization (with the spins oriented along the electrons' direction of motion) was established in the electron ring of HERA, the electronproton collider at DESY in Hamburg. A polarization level of about 55% was obtained and polarizations of over 60% were reproducibly obtained in the following days. The beam energy was 27.52 GeV, corresponding to half integer spin tune of 62.5.

Measurement of inelastic charmonium production at HERA

Energy Technology Data Exchange (ETDEWEB)

Steder, Michael

2008-09-15

This thesis presents measurements of inelastic photoproduction and electroproduction of J/{psi} mesons in ep scattering at HERA. The data was collected by the H1 detector during the HERA II running and corresponds to an integrated luminosity of L {approx} 166 pb{sup -1} in the photoproduction analysis and L {approx} 315 pb{sup -1} in the electroproduction analysis. In both analyses the elasticity of the J/{psi} meson is restricted to a medium range of 0.3 {<=} z {<=} 0.9. The kinematic range of the photoproduction analysis is defined by Q{sup 2} {approx} 0 GeV{sup 2}, 60 {<=}W{sub {gamma}}{sub p}{<=} 240 GeV and P{sub {tau}}{sub ,{psi}}{>=} 1 GeV{sup 2}, whereas the electroproduction analysis is restricted to 3.6 {<=} Q{sup 2} {<=} 100 GeV{sup 2}, 50 {<=}W{sub {gamma}}{sub p}{<=} 225 GeV, and P{sup *}{sub {tau}}{sub ,} {sub {psi}} {>=} 1 GeV. Here P{sup *}{sub {tau}}{sub ,} {sub {psi}} denotes the transverse momentum of the J/{psi} in the {gamma}p center of mass frame. In both kinematic ranges, single differential and double differential cross sections are measured with increased precision with respect to previous analyses. The polarisation of the J/{psi} mesons is studied in fits to the decay angular distributions cos({theta}{sup *}) and {phi}{sup *}. The measured cross sections are compared to different theoretical predictions. The most successful calculation in describing the data accounts for higher order corrections by using a k{sub {tau}} factorisation ansatz in the color singlet model (CSM). In addition, this thesis reviews the description of the data by calculations at leading and next to leading order in the CSM. The polarisation variables are compared to calculations in the factorisation ansatz in NRQCD, in addition to the leading order CSM predictions. (orig.)

Measurement of the Polarized Structure Function $g_1^p$ at HERA

CERN Document Server

Ball, R.D.; Forte, S.; Hughes, V.W.; Lichtenstadt, J.; Ridolfi, G.; Ball, Richard D.; Deshpande, Abhay; Forte, Stefano; Hughes, Vernon W.; Lichtenstadt, Jechiel; Ridolfi, Giovanni

1996-01-01

We present estimates of possible data on spin-dependent asymmetries in inclusive scattering of high energy polarized electrons by high energy polarized protons at HERA, including statistical errors, and discuss systematic uncertainties. We show that these data would shed light on the small x behaviour of the polarized structure function g_1, and would reduce substantially the uncertainty on the determination of the polarized gluon distribution.

Measurement of J/{psi} photoproduction at large momentum transfer at HERA

Energy Technology Data Exchange (ETDEWEB)

Chekanov, S.; Derrick, M.; Magill, S. [Argonne National Lab., Argonne, IL (US)] (and others)

2009-09-15

The proton-dissociative diffractive photoproduction of J/{psi} mesons has been studied in ep collisions with the ZEUS detector at HERA using an integrated luminosity of 112 pb{sup -1}. The cross section is presented as a function of the photon- proton centre-of-mass energy and of the squared four-momentum transfer at the proton vertex. The results are compared to perturbative QCD calculations. (orig.)

Measurement of J/ψ photoproduction at large momentum transfer at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2009-09-01

The proton-dissociative diffractive photoproduction of J/ψ mesons has been studied in ep collisions with the ZEUS detector at HERA using an integrated luminosity of 112 pb -1 . The cross section is presented as a function of the photon- proton centre-of-mass energy and of the squared four-momentum transfer at the proton vertex. The results are compared to perturbative QCD calculations. (orig.)

Measurement of J/ψ helicity distributions in inelastic photoproduction at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2009-06-01

The J/ψ decay angular distributions have been measured in inelastic photoproduction in ep collisions with the ZEUS detector at HERA, using an integrated luminosity of 468 pb -1 . The range in photon-proton centre-of-mass energy, W, was 50 + were measured in the J/ψ rest frame and compared to theoretical predictions at leading and next-to-leading order in QCD. (orig.)

Pomeron in perturbative QCD - its elementary theory and possible phenomenology at HERA

International Nuclear Information System (INIS)

Kwiecinski, J.

1992-04-01

Theoretical ideas concerning the Pomeron in perturbative QCD are reviewed. The Lipatov equation with asymptotic freedom effects taken into account is recalled and the corresponding spectrum of eigenvalues controlling the bare Pomeron intercept analysed. Possible phenomenological implications of the perturbative QCD Pomeron for deep inelastic scattering at the HERA ep collider are briefly discussed. 9 figs., 49 refs. (author)

46 CFR 111.81-1 - Outlet boxes and junction boxes; general.

Science.gov (United States)

2010-10-01

... fixture, wiring device, or similar item, including each separately installed connection and junction box... used. (d) As appropriate, each outlet-box or junction-box installation must meet the following...

Mutations in the putative zinc-binding motif of UL52 demonstrate a complex interdependence between the UL5 and UL52 subunits of the human herpes simplex virus type 1 helicase/primase complex.

Science.gov (United States)

Chen, Yan; Carrington-Lawrence, Stacy D; Bai, Ping; Weller, Sandra K

2005-07-01

Herpes simplex virus type 1 (HSV-1) encodes a heterotrimeric helicase-primase (UL5/8/52) complex. UL5 contains seven motifs found in helicase superfamily 1, and UL52 contains conserved motifs found in primases. The contributions of each subunit to the biochemical activities of the complex, however, remain unclear. We have previously demonstrated that a mutation in the putative zinc finger at UL52 C terminus abrogates not only primase but also ATPase, helicase, and DNA-binding activities of a UL5/UL52 subcomplex, indicating a complex interdependence between the two subunits. To test this hypothesis and to further investigate the role of the zinc finger in the enzymatic activities of the helicase-primase, a series of mutations were constructed in this motif. They differed in their ability to complement a UL52 null virus: totally defective, partial complementation, and potentiating. In this study, four of these mutants were studied biochemically after expression and purification from insect cells infected with recombinant baculoviruses. All mutants show greatly reduced primase activity. Complementation-defective mutants exhibited severe defects in ATPase, helicase, and DNA-binding activities. Partially complementing mutants displayed intermediate levels of these activities, except that one showed a wild-type level of helicase activity. These data suggest that the UL52 zinc finger motif plays an important role in the activities of the helicase-primase complex. The observation that mutations in UL52 affected helicase, ATPase, and DNA-binding activities indicates that UL52 binding to DNA via the zinc finger may be necessary for loading UL5. Alternatively, UL5 and UL52 may share a DNA-binding interface.

High-ET dijet photoproduction at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2007-06-01

The cross section for high-E T dijet production in photoproduction has been measured with the ZEUS detector at HERA using an integrated luminosity of 81.8 pb -1 . The events were required to have a virtuality of the incoming pho- ton, Q 2 , of less than 1 GeV 2 and a photon-proton centre-of-mass energy in the range 142 γp T jet1 >20 GeV and E T jet2 >15 GeV and pseudorapidity requirements of -1 jet1,2 jet <2.5. The measurements show sensitivity to the parton distributions in the photon and proton and effects beyond next-to-leading order in QCD. Hence these data can be used to constrain further the parton densities in the proton and photon. (orig.)

An extraction of the skewing factor from DESY-HERA data

International Nuclear Information System (INIS)

Favart, Laurent; Machado, Magno V.T.; Schoeffel, Laurent

2007-01-01

In this contribution we present recent investigation on the extraction of the skewing factor, defined as the ratio of the imaginary parts of the amplitudes ImA (gamma * p → gamma * p) / ImA (gamma * p → gamma p). This factor is extracted from the data using the recent DVCS and the inclusive inelastic cross section measurements at DESY-HERA. We compare the results to the theoretical predictions for NLO QCD and the color dipole approach. (author)

Study of charm production at HERA using the ZEUS detector

Energy Technology Data Exchange (ETDEWEB)

Woudenberg, R van

1995-09-26

The subject of this thesis is charm production at HERA, especially in photoproduction (Q{sup 2}{approx}0). In lowest order, the production of heavy quarks proceeds via photo-gluon fusion. Thus a measurement of charm production provides a handle on the gluon structure of the proton. (Leading and next-to-leading order processes together result in a total cross section of {sigma}(ep{yields}ec anti cX){approx_equal}O(1.0 {mu}b)). (orig./HSI).

The Arabidopsis thaliana homolog of the helicase RTEL1 plays multiple roles in preserving genome stability.

Science.gov (United States)

Recker, Julia; Knoll, Alexander; Puchta, Holger

2014-12-01

In humans, mutations in the DNA helicase Regulator of Telomere Elongation Helicase1 (RTEL1) lead to Hoyeraal-Hreidarsson syndrome, a severe, multisystem disorder. Here, we demonstrate that the RTEL1 homolog in Arabidopsis thaliana plays multiple roles in preserving genome stability. RTEL1 suppresses homologous recombination in a pathway parallel to that of the DNA translocase FANCM. Cytological analyses of root meristems indicate that RTEL1 is involved in processing DNA replication intermediates independently from FANCM and the nuclease MUS81. Moreover, RTEL1 is involved in interstrand and intrastrand DNA cross-link repair independently from FANCM and (in intrastrand cross-link repair) parallel to MUS81. RTEL1 contributes to telomere homeostasis; the concurrent loss of RTEL1 and the telomerase TERT leads to rapid, severe telomere shortening, which occurs much more rapidly than it does in the single-mutant line tert, resulting in developmental arrest after four generations. The double mutant rtel1-1 recq4A-4 exhibits massive growth defects, indicating that this RecQ family helicase, which is also involved in the suppression of homologous recombination and the repair of DNA lesions, can partially replace RTEL1 in the processing of DNA intermediates. The requirement for RTEL1 in multiple pathways to preserve genome stability in plants can be explained by its putative role in the destabilization of DNA loop structures, such as D-loops and T-loops. © 2014 American Society of Plant Biologists. All rights reserved.

Search for excited leptons at the HERA collider with the H1 detector; Recherche de leptons excites sur le collisionneur HERA avec le detecteur H1

Energy Technology Data Exchange (ETDEWEB)

Trinh, T.N

2008-05-15

The work presented in this Ph.D. thesis is a search for first generation excited leptons using the full data sample collected by the Hl detector installed on the HERA electron (positron)-proton collider. This study is motivated by theoretical approaches which extend the Standard Model by assuming the existence of lepton compositeness. The whole e{sup -}p and e{sup +}p collisions data collected by Hi from 1994 to 2007 and corresponding to a total integrated luminosity of 475 pb{sup -1} have been used for this analysis. The analysis of 13 different topologies was done, covering all the decay branching ratio of excited electrons (e*) and neutrinos ({nu}*). No evidence of the production of first generation excited leptons was observed. Exclusion limits on e* and {nu}* production cross section and on the coupling constant f/{lambda} as a function of the excited leptons mass are derived within gauge mediated models. The limit obtained extend the excluded region compared to previous excited lepton searches. For the first time at HERA, possible e* production via contact interactions is also studied. The e* production via contact and gauge productions together, including the interference between the two production modes, was considered. (author)

The Use of the Time Average Visibility for Analyzing HERA-19 Commissioning Data: Effects of Non-Redundancy

Science.gov (United States)

Benefo, Roshan; Gallardo, Samavarti; Aguirre, James; La Plante, Paul; HERA Collaboration

2018-01-01

The Hydrogen Epoch of Reionization Array (HERA) is a radio telescope situated in South Africa designed to observe the universe from redshifts 13 through 6, in order to detect the emission of the 21 cm line from the hydrogen spin-flip transition. We perform 21 cm cosmology due to its relation with reionization; by detecting this emission line, we can identify the timing of reionization, and understand more about the nature of the universe during the birth of the first stars and galaxies. With that, we can understand the heating conditions of the initial universe, providing us a larger picture of the conditions that created the large-scale structure of the universe we observe today. The HERA array currently consists of 19 antennas, spaced in a hexagonal grid pattern. We consider a robust observable, the time-averaged visibility (TAV), which is in principle sensitive to variations in the beam pattern between antenna elements and is easier to measure than the beam pattern itself. We use this TAV to explore the non-redundancy of baselines in the HERA array due either to cross-coupling between antennas (probed by antenna location in the array) or non-uniformity in their manufacture. The TAV may provide a simple way of verifying improvements in antenna element redundancy.

Leading neutron energy and pT distributions in deep inelastic scattering and photoproduction at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2007-02-01

The production of energetic neutrons in ep collisions has been studied with the ZEUS detector at HERA. The neutron energy and p T 2 distributions were measured with a forward neutron calorimeter and tracker in a 40 pb -1 sample of inclusive deep inelastic scattering (DIS) data and a 6 pb -1 sample of photoproduction data. The neutron yield in photoproduction is suppressed relative to DIS for the lower neutron energies and the neutrons have a steeper p T 2 distribution, consistent with the expectation from absorption models. The distributions are compared to HERA measurements of leading protons. The neutron energy and transverse-momentum distributions in DIS are compared to Monte Carlo simulations and to the predictions of particle exchange models. Models of pion exchange incorporating absorption and additional secondary meson exchanges give a good description of the data. (orig.)

Monte-Carlo studies for the search of top quarks at HERA

International Nuclear Information System (INIS)

Fuerstenau, H.

1989-06-01

In this thesis the simulation of processes to be observed in the HERA storage ring is described in order to identify events with a top particle. For this particle kinematics is used together with the jet model. As results transverse momentum distributions, mass spectra, and inclusive electron angular distributions are calculated for top particles and also for charm and bottom particles in order to separate top events from the background. (HSI)

A global analysis of inclusive diffractive cross sections at HERA

International Nuclear Information System (INIS)

Royon, C.; Schoeffel, L.; Sapeta, S.; Peschanski, R.; Sauvan, E.

2006-10-01

We describe the most recent data on the diffractive structure functions from the H1 and ZEUS Collaborations at HERA using four models. First, a Pomeron Structure Function (PSF) model, in which the Pomeron is considered as an object with parton distribution functions. Then, the Bartels Ellis Kowalski Wuesthoff (BEKW) approach is discussed, assuming the simplest perturbative description of the Pomeron using a two-gluon ladder. A third approach, the Bialas Peschanski (BP) model, based on the dipole formalism is then described. Finally, we discuss the Golec-Biernat-Wuesthoff (GBW) saturation model which takes into account saturation effects. The best description of all available measurements can be achieved with either the PSF based model or the BEKW approach. In particular, the BEKW prediction allows to include the highest β measurements, which are dominated by higher twists effects and provide an efficient and compact parametrisation of the diffractive cross section. The two other models also give a good description of cross section measurements at small x with a small number of parameters. The comparison of all predictions allows us to identify interesting differences in the behaviour of the effective pomeron intercept and in the shape of the longitudinal component of the diffractive structure functions. In this last part, we present some features that can be discriminated by new experimental measurements, completing the HERA program. (authors)

A global analysis of inclusive diffractive cross sections at HERA

Energy Technology Data Exchange (ETDEWEB)

Royon, C.; Schoeffel, L. [Service de Physique des Particules, CE-Saclay, F-91191 Gif-sur-Yvette Cedex (France); Sapeta, S. [M. Smoluchowski Institue of Physics Jagellonian University Reymonta 4, 30-059 Krakow (Poland); Peschanski, R. [Service de Physique Theorique, CE-Saclay, F-91191 Gif-sur-Yvette Cedex (France); Sauvan, E. [CPPM, IN2P3-CNRS et Universitie de la Mediterranee, F-13288 Marseille Cedex 09 (France)

2006-10-15

We describe the most recent data on the diffractive structure functions from the H1 and ZEUS Collaborations at HERA using four models. First, a Pomeron Structure Function (PSF) model, in which the Pomeron is considered as an object with parton distribution functions. Then, the Bartels Ellis Kowalski Wuesthoff (BEKW) approach is discussed, assuming the simplest perturbative description of the Pomeron using a two-gluon ladder. A third approach, the Bialas Peschanski (BP) model, based on the dipole formalism is then described. Finally, we discuss the Golec-Biernat-Wuesthoff (GBW) saturation model which takes into account saturation effects. The best description of all available measurements can be achieved with either the PSF based model or the BEKW approach. In particular, the BEKW prediction allows to include the highest {beta} measurements, which are dominated by higher twists effects and provide an efficient and compact parametrisation of the diffractive cross section. The two other models also give a good description of cross section measurements at small x with a small number of parameters. The comparison of all predictions allows us to identify interesting differences in the behaviour of the effective pomeron intercept and in the shape of the longitudinal component of the diffractive structure functions. In this last part, we present some features that can be discriminated by new experimental measurements, completing the HERA program. (authors)

MC rate at NLO for heavy flavour photoproduction at HERA

Energy Technology Data Exchange (ETDEWEB)

Toll, Tobias

2010-02-15

A Monte Carlo at next-to-leading order (MC rate at NLO) has been constructed for the production of heavy quark flavours in photoproduction. As such, it is the rst Monte Carlo event generator with next-to-leading order (NLO) accuracy for a process in lepton hadron scattering. In order to construct such an MC rate at NLO, the matrix element for the process has to be calculated at NLO and then be matched with a parton shower. When doing this, it is important that none of the parton configurations produced are doubly counted. In this thesis, the concept of a Monte Carlo event generator will be explained, with emphasis on the HERWIG parton shower. Also, different techniques of calculating matrix elements at NLO accuracy will be explained. It will then be shown how the NLO calculation can be matched with the HERWIG parton shower in an MC rate at NLO without double counting, producing unweighted events at NLO-accuracy. Many comparisons are made between the MC rate at NLO here constructed, the HERWIG Monte Carlo and the FMNR NLO calculation. Also many comparisons are made to HERA data from the H1 and ZEUS experiments. It is shown that all HERA data with heavy quarks produced in photoproduction can be described by the MC rate at NLO program constructed in this thesis. (orig.)

MC rate at NLO for heavy flavour photoproduction at HERA

International Nuclear Information System (INIS)

Toll, Tobias

2010-02-01

A Monte Carlo at next-to-leading order (MC rate at NLO) has been constructed for the production of heavy quark flavours in photoproduction. As such, it is the rst Monte Carlo event generator with next-to-leading order (NLO) accuracy for a process in lepton hadron scattering. In order to construct such an MC rate at NLO, the matrix element for the process has to be calculated at NLO and then be matched with a parton shower. When doing this, it is important that none of the parton configurations produced are doubly counted. In this thesis, the concept of a Monte Carlo event generator will be explained, with emphasis on the HERWIG parton shower. Also, different techniques of calculating matrix elements at NLO accuracy will be explained. It will then be shown how the NLO calculation can be matched with the HERWIG parton shower in an MC rate at NLO without double counting, producing unweighted events at NLO-accuracy. Many comparisons are made between the MC rate at NLO here constructed, the HERWIG Monte Carlo and the FMNR NLO calculation. Also many comparisons are made to HERA data from the H1 and ZEUS experiments. It is shown that all HERA data with heavy quarks produced in photoproduction can be described by the MC rate at NLO program constructed in this thesis. (orig.)

Channel box

International Nuclear Information System (INIS)

Tanabe, Akira.

1993-01-01

In a channel box of a BWR type reactor, protruding pads are disposed in axial position on the lateral side of a channel box opposing to a control rod and facing the outer side portion of the control rod in a reactor core loaded state. In the initial loading stage of fuel assemblies, channel fasteners and spacer pads are abutted against each other in the upper portion between the channel boxes sandwiching the control rod therebetween. Further, in the lower portion, a gap as a channel for the movement of the control rod is ensured by the support of fuel support metals. If the channel box is bent toward the control rod along with reactor operation, the pads are abutted against each other to always ensure the gap through which the control rod can move easily. Further, when the pads are brought into contact with each other, the bending deformation of the channel box is corrected by urging to each other. Thus, the control rod can always be moved smoothly to attain reactor safety operation. (N.H.)

Charm production and QCD analysis at HERA and LHC

International Nuclear Information System (INIS)

Zenaiev, Oleksandr

2015-03-01

In this thesis the study of charm production in ep and pp collisions is presented. The heavy-quark masses provide a hard scale, allowing the application of perturbative QCD. A measurement of D + -meson production in deep inelastic scattering with the ZEUS detector at HERA is presented. The analysis was performed using a data sample with an integrated luminosity of 354 pb -1 . Differential cross sections were measured as a function of virtuality Q 2 , inelasticity y, transverse momentum and pseudorapidity of the D + mesons. Lifetime information was used to reduce the combinatorial background significantly. Next-to-leading-order QCD predictions in the fixed-flavour-number scheme were compared to the data. This measurement was combined with other H1 and ZEUS measurements of charm production. The combination was performed at inclusive level for the reduced charm cross sections, which were obtained from the measured visible cross sections, extrapolated to the full phase space using the shape of the theoretical predictions in the fixed-flavour-number scheme. The combination method accounts for the correlations of the systematic uncertainties among the different datasets, thus allowing cross calibration of different measurements. The combined charm data were compared to QCD predictions in various heavy-flavour schemes and used together with the inclusive production data at HERA as input for QCD analyses to determine the charm running mass in the MS renormalisation scheme and the optimal values of the charm-quark mass parameters in other heavy-flavour schemes. An additional combination of the H1 and ZEUS D *+ visible cross sections was performed to provide the combined cross sections without theory-related uncertainties from the extrapolation procedure. This combination also provides differential cross sections as a function of the D *+ kinematic variables. Next-to-leading-order QCD predictions in the fixed-flavour-number scheme were compared to the combined D *+ cross

DEAD-box helicase 27 promotes colorectal cancer growth and metastasis and predicts poor survival in CRC patients.

Science.gov (United States)

Tang, Jieting; Chen, Huarong; Wong, Chi-Chun; Liu, Dabin; Li, Tong; Wang, Xiaohong; Ji, Jiafu; Sung, Joseph Jy; Fang, Jing-Yuan; Yu, Jun

2018-03-14

Copy number alterations (CNAs) are crucial for colorectal cancer (CRC) development. In this study, DEAD box polypeptide 27 (DDX27) was identified to be highly amplified in both TCGA CRC (474/615) and primary CRC (47/103), which was positively correlated with its mRNA overexpression. High DDX27 mRNA (N = 199) and protein expression (N = 260) predicted poor survival in CRC patients. Ectopic expression of DDX27 increased CRC cells proliferation, migration and invasion, but suppressed apoptosis. Conversely, silencing of DDX27 exerted opposite effects in vitro and significantly inhibited murine xenograft tumor growth and lung metastasis in vivo. Up-regulation of DDX27 enhanced and prolonged TNF-α-mediated NF-κB signaling. Nucleophosmin (NPM1) was identified as a binding partner of DDX27. DDX27 increased nuclear NPM1 and NF-κB-p65 interaction to enhance DNA binding activity of NF-κB. Silencing NPM1 abrogated DDX27-activating NF-κB signaling and its tumor-promoting function. Together, DDX27 is overexpressed and plays a pivotal oncogenic role in CRC.

Measurement of charm in charged current at HERA

Energy Technology Data Exchange (ETDEWEB)

Zimmermann, Tobias

2008-12-15

A measurement of charm production in charged current (CC) polarized electron-proton deep inelastic scattering processes with data from the H1 detector at the HERA collider is presented. This process in principle allows access to the strange quark density in the proton. In total 5460 CC candidate events in e{sup +}p and 6253 in e{sup -}p data are selected in the kinematic range Q{sup 2}>223 GeV{sup 2} and 0.03HERA always have the same charge as the beam lepton. The extracted charm fractions in the selected CC candidate event samples are F{sub c}=9.5{+-}8.9{+-}3.0 % for e{sup +}p and F{sub c}=4.4{+-}6.9{+-}2.6 % for e{sup -}p. Due to the large statistical errors of the measured charm fractions, the strange quark density in the proton has not been extracted. (orig.)

Mycobacterium smegmatis RqlH defines a novel clade of bacterial RecQ-like DNA helicases with ATP-dependent 3'-5' translocase and duplex unwinding activities.

Science.gov (United States)

Ordonez, Heather; Unciuleac, Mihaela; Shuman, Stewart

2012-05-01

The Escherichia coli RecQ DNA helicase participates in a pathway of DNA repair that operates in parallel to the recombination pathway driven by the multisubunit helicase-nuclease machine RecBCD. The model mycobacterium Mycobacterium smegmatis executes homologous recombination in the absence of its helicase-nuclease machine AdnAB, though it lacks a homolog of E. coli RecQ. Here, we identify and characterize M. smegmatis RqlH, a RecQ-like helicase with a distinctive domain structure. The 691-amino acid RqlH polypeptide consists of a RecQ-like ATPase domain (amino acids 1-346) and tetracysteine zinc-binding domain (amino acids 435-499), separated by an RqlH-specific linker. RqlH lacks the C-terminal HRDC domain found in E. coli RecQ. Rather, the RqlH C-domain resembles bacterial ComF proteins and includes a phosphoribosyltransferase-like module. We show that RqlH is a DNA-dependent ATPase/dATPase that translocates 3'-5' on single-stranded DNA and has 3'-5' helicase activity. These functions inhere to RqlH-(1-505), a monomeric motor unit comprising the ATPase, linker and zinc-binding domains. RqlH homologs are distributed widely among bacterial taxa. The mycobacteria that encode RqlH lack a classical RecQ, though many other Actinobacteria have both RqlH and RecQ. Whereas E. coli K12 encodes RecQ but lacks a homolog of RqlH, other strains of E. coli have both RqlH and RecQ.

Aging Studies for the Large Honeycomb Drift Tube System of the Outer Tracker of HERA-B

CERN Document Server

Albrecht, H; Beck, M; Belkov, A; Berkhan, K; Bohm, G; Bruinsma, M; Buran, T; Capeans, M; Chamanina, J; Chen, BX; Deckers, H; Dehmelt, K; Dong, X; Eckmann, R; Emelianov, D; Fourletov, S; Golutvin, I; Hohlmann, M; Hoepfner, Kerstin; Hulsbergen, W; Jia, Y; Jiang, C; Kapitza, H; Karabekyan, S; Ke, Z; Kiryushin, Y; Kolanoski, H; Korpar, S; Krizan, P; Krucker, D; Lanyov, A; Liu, Y Q; Lohse, T; Loke, R; Mankel, R; Medin, G; Michel, E; Moshkin, A; Ni, J; Nowak, S; Ouchrif, M; Padilla, C; Pose, D; Ressing, D; Saveliev, V; Schmidt, B; Schmidt-Parzefall, W; Schreiner, A; Schwanke, U; Schwarz, Andreas S; Siccama, I; Solunin, S; Somov, S; Souvorov, V; Spiridonov, A; Staric, M; Stegmann, C; Steinkamp, O; Tesch, N; Tsakov, I; Uwer, U; Vassiliev, S; Vukotic, I; Walter, M; Wang, J J; Wang, Y M; Wurth, R; Yang, J; Zheng, Z; Zhu, Z; Zimmerman, R

2003-01-01

The HERA-B Outer Tracker consists of drift tubes folded from polycarbonate foil and is operated with Ar/CF4/CO2 as drift gas. The detector has to stand radiation levels which are similar to LHC conditions. The first prototypes exposed to radiation in HERA-B suffered severe radiation damage due to the development of self-sustaining currents (Malter effect). In a subsequent extended R&D program major changes to the original concept for the drift tubes (surface conductivity, drift gas, production materials) have been developed and validated for use in harsh radiation environments. In the test program various aging effects (like Malter currents, gain loss due to anode aging and etching of the anode gold surface) have been observed and cures by tuning of operation parameters have been developed.

Real-time electrochemical monitoring of isothermal helicase-dependent amplification of nucleic acids.

Science.gov (United States)

Kivlehan, Francine; Mavré, François; Talini, Luc; Limoges, Benoît; Marchal, Damien

2011-09-21

We described an electrochemical method to monitor in real-time the isothermal helicase-dependent amplification of nucleic acids. The principle of detection is simple and well-adapted to the development of portable, easy-to-use and inexpensive nucleic acids detection technologies. It consists of monitoring a decrease in the electrochemical current response of a reporter DNA intercalating redox probe during the isothermal DNA amplification. The method offers the possibility to quantitatively analyze target nucleic acids in less than one hour at a single constant temperature, and to perform at the end of the isothermal amplification a DNA melt curve analysis for differentiating between specific and non-specific amplifications. To illustrate the potentialities of this approach for the development of a simple, robust and low-cost instrument with high throughput capability, the method was validated with an electrochemical system capable of monitoring up to 48 real-time isothermal HDA reactions simultaneously in a disposable microplate consisting of 48-electrochemical microwells. Results obtained with this approach are comparable to that obtained with a well-established but more sophisticated and expensive fluorescence-based method. This makes for a promising alternative detection method not only for real-time isothermal helicase-dependent amplification of nucleic acid, but also for other isothermal DNA amplification strategies.

Mcm10 regulates DNA replication elongation by stimulating the CMG replicative helicase.

Science.gov (United States)

Lõoke, Marko; Maloney, Michael F; Bell, Stephen P

2017-02-01

Activation of the Mcm2-7 replicative DNA helicase is the committed step in eukaryotic DNA replication initiation. Although Mcm2-7 activation requires binding of the helicase-activating proteins Cdc45 and GINS (forming the CMG complex), an additional protein, Mcm10, drives initial origin DNA unwinding by an unknown mechanism. We show that Mcm10 binds a conserved motif located between the oligonucleotide/oligosaccharide fold (OB-fold) and A subdomain of Mcm2. Although buried in the interface between these domains in Mcm2-7 structures, mutations predicted to separate the domains and expose this motif restore growth to conditional-lethal MCM10 mutant cells. We found that, in addition to stimulating initial DNA unwinding, Mcm10 stabilizes Cdc45 and GINS association with Mcm2-7 and stimulates replication elongation in vivo and in vitro. Furthermore, we identified a lethal allele of MCM10 that stimulates initial DNA unwinding but is defective in replication elongation and CMG binding. Our findings expand the roles of Mcm10 during DNA replication and suggest a new model for Mcm10 function as an activator of the CMG complex throughout DNA replication. © 2017 Lõoke et al.; Published by Cold Spring Harbor Laboratory Press.

Prompt Photons in Photoproduction at HERA

CERN Document Server

Aaron, F.D.; Alexa, C.; Andreev, V.; Antunovic, B.; Backovic, S.; Baghdasaryan, A.; Barrelet, E.; Bartel, W.; Begzsuren, K.; Belousov, A.; Bizot, J.C.; Boudry, V.; Bozovic-Jelisavcic, I.; Bracinik, J.; Brandt, G.; Brinkmann, M.; Brisson, V.; Bruncko, D.; Bunyatyan, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Cantun Avila, K.B.; Cerny, K.; Cerny, V.; Chekelian, V.; Cholewa, A.; Contreras, J.G.; Coughlan, J.A.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Daum, K.; Deak, M.; de Boer, Y.; Delcourt, B.; Del Degan, M.; Delvax, J.; De Wolf, E.A.; Diaconu, C.; Dodonov, V.; Dossanov, A.; Dubak, A.; Eckerlin, G.; Efremenko, V.; Egli, S.; Eliseev, A.; Elsen, E.; Falkiewicz, A.; Favart, L.; Fedotov, A.; Felst, R.; Feltesse, J.; Ferencei, J.; Fischer, D.J.; Fleischer, M.; Fomenko, A.; Gabathuler, E.; Gayler, J.; Ghazaryan, S.; Glazov, A.; Glushkov, I.; Goerlich, L.; Gogitidze, N.; Gouzevitch, M.; Grab, C.; Greenshaw, T.; Grell, B.R.; Grindhammer, G.; Habib, S.; Haidt, D.; Helebrant, C.; Henderson, R.C.W.; Hennekemper, E.; Henschel, H.; Herbst, M.; Herrera, G.; Hildebrandt, M.; Hiller, K.H.; Hoffmann, D.; Horisberger, R.; Hreus, T.; Jacquet, M.; Janssen, X.; Jonsson, L.; Jung, A.W.; Jung, H.; Kapichine, M.; Katzy, J.; Kenyon, I.R.; Kiesling, C.; Klein, M.; Kleinwort, C.; Kluge, T.; Knutsson, A.; Kogler, R.; Kostka, P.; Kraemer, M.; Krastev, K.; Kretzschmar, J.; Kropivnitskaya, A.; Kruger, K.; Kutak, K.; Landon, M.P.J.; Lange, W.; Lastovicka-Medin, G.; Laycock, P.; Lebedev, A.; Leibenguth, G.; Lendermann, V.; Levonian, S.; Li, G.; Lipka, K.; Liptaj, A.; List, B.; List, J.; Loktionova, N.; Lopez-Fernandez, R.; Lubimov, V.; Makankine, A.; Malinovski, E.; Marage, P.; Marti, Ll.; Martyn, H.U.; Maxfield, S.J.; Mehta, A.; Meyer, A.B.; Meyer, H.; Meyer, H.; Meyer, J.; Michels, V.; Mikocki, S.; Milcewicz-Mika, I.; Moreau, F.; Morozov, A.; Morris, J.V.; Mozer, M.U.; Mudrinic, M.; Muller, K.; Murin, P.; Naumann, Th.; Newman, P.R.; Niebuhr, C.; Nikiforov, A.; Nikitin, D.; Nowak, G.; Nowak, K.; Nozicka, M.; Olivier, B.; Olsson, J.E.; Osman, S.; Ozerov, D.; Palichik, V.; Panagoulias, I.; Pandurovic, M.; Papadopoulou, Th.; Pascaud, C.; Patel, G.D.; Pejchal, O.; Perez, E.; Petrukhin, A.; Picuric, I.; Piec, S.; Pitzl, D.; Placakyte, R.; Pokorny, B.; Polifka, R.; Povh, B.; Radescu, V.; Rahmat, A.J.; Raicevic, N.; Raspiareza, A.; Ravdandorj, T.; Reimer, P.; Rizvi, E.; Robmann, P.; Roland, B.; Roosen, R.; Rostovtsev, A.; Rotaru, M.; Ruiz Tabasco, J.E.; Rurikova, Z.; Rusakov, S.; Salek, D.; Sankey, D.P.C.; Sauter, M.; Sauvan, E.; Schmitt, S.; Schoeffel, L.; Schoning, A.; Schultz-Coulon, H.C.; Sefkow, F.; Shaw-West, R.N.; Shtarkov, L.N.; Shushkevich, S.; Sloan, T.; Smiljanic, I.; Soloviev, Y.; Sopicki, P.; South, D.; Spaskov, V.; Specka, A.; Staykova, Z.; Steder, M.; Stella, B.; Stoicea, G.; Straumann, U.; Sunar, D.; Sykora, T.; Tchoulakov, V.; Thompson, G.; Thompson, P.D.; Toll, T.; Tomasz, F.; Tran, T.H.; Traynor, D.; Trinh, T.N.; Truol, P.; Tsakov, I.; Tseepeldorj, B.; Turnau, J.; Urban, K.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Vargas Trevino, A.; Vazdik, Y.; Vinokurova, S.; Volchinski, V.; von den Driesch, M.; Wegener, D.; Wissing, Ch.; Wunsch, E.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhokin, A.; Zimmermann, T.; Zohrabyan, H.; Zomer, F.; Zus, R.

2010-01-01

The production of prompt photons is measured in the photoproduction regime of electron-proton scattering at HERA. The analysis is based on a data sample corresponding to a total integrated luminosity of 340 pb^-1 collected by the H1 experiment. Cross sections are measured for photons with transverse momentum and pseudorapidity in the range 6 < Et < 15 GeV and -1.0 < eta < 2.4, respectively. Cross sections for events with an additional jet are measured as a function of the transverse energy and pseudorapidity of the jet, and as a function of the fractional momenta x_gamma and x_p carried by the partons entering the hard scattering process. The correlation between the photon and the jet is also studied. The results are compared with QCD predictions based on the collinear and on the k_T factorisation approaches.

Exclusive vector meson production at HERA

International Nuclear Information System (INIS)

Szuba, Dorota

2013-01-01

The exclusive photoproduction of Υ has been studied with the ZEUS detector in ep collisions at HERA. The exponential slope, b, of the |t|-dependence of the cross section, where t is the squared four-momentum transfer at the proton vertex, has been measured. This constitutes the first measurement of the |t|-dependence of the γp→Υp cross section. The differential crosssections as a function of t at lower energies of γp centre-of-mass has been studied in exclusive diffractive photoproduction of J/ψ mesons with the H1 detector. The exclusive electroproduction of two pions has been measured by the ZEUS experiment. The two-pion invariant-mass distribution is interpreted in terms of the pion electromagnetic form factor, assuming that the studied mass range includes the contributions of the ρ, ρ′ and . ρ'' vector-meson states.

Search for Single Top Quark Production at HERA

CERN Document Server

Aaron, F D; Alexa, C; Alimujiang, K; Andreev, V; Antunovic, B; Asmone, A; Backovic, S; Baghdasaryan, A; Barrelet, E; Bartel, W; Begzsuren, K; Belousov, A; Bizot, J C; Boudry, V; Bozovic-Jelisavcic, I; Bracinik, J; Brandt, G; Brinkmann, M; Brisson, V; Bruncko, D; Bunyatyan, A; Buschhorn, G; Bystritskaya, L; Campbell, A J; Cantun Avila, K B; Cassol-Brunner, F; Cerny, K; Cerny, V; Chekelian, V; Cholewa, A; Contreras, J G; Coughlan, J A; Cozzika, G; Cvach, J; Dainton, J B; Daum, K; Deak, M; de Boer, Y; Delcourt, B; Del Degan, M; Delvax, J; De Roeck, A; De Wolf, E A; Diaconu, C; Dodonov, V; Dossanov, A; Dubak, A; Eckerlin, G; Efremenko, V; Egli, S; Eliseev, A; Elsen, E; Falkiewicz, A; Favart, L; Fedotov, A; Felst, R; Feltesse, J; Ferencei, J; Fischer, D J; Fleischer, M; Fomenko, A; Gabathuler, E; Gayler, J; Ghazaryan, S; Glazov, A; Glushkov, I; Goerlich, L; Gogitidze, N; Gouzevitch, M; Grab, C; Greenshaw, T; Grell, B R; Grindhammer, G; Habib, S; Haidt, D; Helebrant, C; Henderson, R C W; Hennekemper, E; Henschel, H; Herbst, M; Herrera, G; Hildebrandt, M; Hiller, K H; Hoffmann, D; Horisberger, R; Hreus, T; Jacquet, M; Janssen, M E; Janssen, X; Jonsson, L; Jung, Andreas Werner; Jung, H; Kapichine, M; Katzy, J; Kenyon, I R; Kiesling, C; Klein, M; Kleinwort, C; Kluge, T; Knutsson, A; Kogler, R; Kostka, P; Kraemer, M; Krastev, K; Kretzschmar, J; Kropivnitskaya, A; Kruger, K; Kutak, K; Landon, M P J; Lange, W; Lastovicka-Medin, G; Laycock, P; Lebedev, A; Leibenguth, G; Lendermann, V; Levonian, S; Li, G; Lipka, K; Liptaj, A; List, B; List, J; Loktionova, N; Lopez-Fernandez, R; Lubimov, V; Lytkin, L; Makankine, A; Malinovski, E; Marage, P; Marti, Ll; Martyn, H U.; Maxfield, S J; Mehta, A; Meyer, A B; Meyer, H; Meyer, H; Meyer, J; Michels, V; Mikocki, S; Milcewicz-Mika, I; Moreau, F; Morozov, A; Morris, J V; Mozer, Matthias Ulrich; Mudrinic, M; Muller, K; Murin, P; Naumann, Th; Newman, P R; Niebuhr, C; Nikiforov, A; Nowak, G; Nowak, K; Nozicka, M; Olivier, B; Olsson, J E; Osman, S; Ozerov, D; Palichik, V; Panagoulias, I; Pandurovic, M; Papadopoulou, Th; Pascaud, C; Patel, G D; Pejchal, O; Perez, E; Petrukhin, A; Picuric, I; Piec, S; Pitzl, D; Placakyte, R; Pokorny, B; Polifka, R; Povh, B; Preda, T; Radescu, V; Rahmat, A J; Raicevic, N; Raspiareza, A; Ravdandorj, T; Reimer, P; Rizvi, E; Robmann, P; Roland, B; Roosen, R; Rostovtsev, A; Rotaru, M; Ruiz Tabasco, J E; Rurikova, Z; Rusakov, S; Salek, D; Sankey, D P C; Sauter, M; Sauvan, E; Schmitt, S; Schmitz, C; Schoeffel, L; Schoning, A; Schultz-Coulon, H C; Sefkow, F; Shaw-West, R N; Shtarkov, L N; Shushkevich, S; Sloan, T; Smiljanic, Ivan; Soloviev, Y; Sopicki, P; South, D; Spaskov, V; Specka, Arnd E; Staykova, Z; Steder, M; Stella, B; Stoicea, G; Straumann, U.; Sunar, D; Sykora, T; Tchoulakov, V; Thompson, G; Thompson, P D; Toll, T; Tomasz, F; Tran, T H; Traynor, D; Trinh, T N; Truol, P; Tsakov, I; Tseepeldorj, B; Turnau, J; Urban, K; Valkarova, A; Vallee, C; Van Mechelen, P; Vargas Trevino, A; Vazdik, Y; Vinokurova, S; Volchinski, V; von den Driesch, M; Wegener, D; Wissing, Ch; Wunsch, E; Zacek, J; Zalesak, J; Zhang, Z; Zhokin, A; Zimmermann, T; Zohrabyan, H; Zomer, F; Zus, R

2009-01-01

A search for single top quark production is performed in the full ep data sample collected by the H1 experiment at HERA, corresponding to an integrated luminosity of 474 pb^-1. Decays of top quarks into a b quark and a W boson with subsequent leptonic or hadronic decay of the W are investigated. A multivariate analysis is performed to discriminate top quark production from Standard Model background processes. An upper limit on the top quark production cross section via flavour changing neutral current processes sigma (ep -> etX) < 0.25 pb is established at 95% CL. Limits on the anomalous coupling kappa_{tu gamma} are derived.

Optimization of the transverse electron polarization of HERA at 26.7 GeV

International Nuclear Information System (INIS)

Grosshauser, C.

1994-08-01

The methods applied for the optimization of the transverse electron polarization were presented in the following and the measurements performed by this extensively described. By these measurements could be shown that in pure electron-beam operation a degree of polarization of P similar 67% can be reached. A adjustment of the electron storage ring determined by this allows also under luminosity conditions without further optimization an only fewly deminuished transverse electron polarization. The measured polarization values where thereby over several hours stable and could also after months be reproduced. An interference of the polarization by electron-proton collisions could not be stated in the framework of the measurements. In an optimization of the electron polarization performed during the luminosity operation polarization values of P similar 67% could be reached. Thereby could be stated that an optimization of the electron polarization can be perforemd parallel to the data taking of the experiments H1 and ZEUS without fearing of extensive interferences for the measurement conditions of the experiments. By means of the resonance depolarization, which was at HERA for the first time successfully applied, the electron energy was determined with a maximal error of similar 3 MeV and an energy calibration of the HERA electron storage ring performed. At this energy calibration a mean deviation of the nominal energy from the energy values, which were determined by means of the depolarization measurements, of similar 35 MeV resulted. By the different studies on the transverse electron polarization and by the production of the worldwide first longitudinally polarized electron beam in a storage ring, in which a degree of polarization of P long ≥55% was observed, could be shown that a data taking of the experiment HERMES can be pursued parallel to the experiments H1 and ZEUS in the electron storage ring HERA

HERA: A dynamic web application for visualizing community exposure to flood hazards based on storm and sea level rise scenarios

Science.gov (United States)

Jones, Jeanne M.; Henry, Kevin; Wood, Nathan J.; Ng, Peter; Jamieson, Matthew

2017-01-01

The Hazard Exposure Reporting and Analytics (HERA) dynamic web application was created to provide a platform that makes research on community exposure to coastal-flooding hazards influenced by sea level rise accessible to planners, decision makers, and the public in a manner that is both easy to use and easily accessible. HERA allows users to (a) choose flood-hazard scenarios based on sea level rise and storm assumptions, (b) appreciate the modeling uncertainty behind a chosen hazard zone, (c) select one or several communities to examine exposure, (d) select the category of population or societal asset, and (e) choose how to look at results. The application is designed to highlight comparisons between (a) varying levels of sea level rise and coastal storms, (b) communities, (c) societal asset categories, and (d) spatial scales. Through a combination of spatial and graphical visualizations, HERA aims to help individuals and organizations to craft more informed mitigation and adaptation strategies for climate-driven coastal hazards. This paper summarizes the technologies used to maximize the user experience, in terms of interface design, visualization approaches, and data processing.

HERA: A dynamic web application for visualizing community exposure to flood hazards based on storm and sea level rise scenarios

Science.gov (United States)

Jones, Jeanne M.; Henry, Kevin; Wood, Nathan; Ng, Peter; Jamieson, Matthew

2017-12-01

The Hazard Exposure Reporting and Analytics (HERA) dynamic web application was created to provide a platform that makes research on community exposure to coastal-flooding hazards influenced by sea level rise accessible to planners, decision makers, and the public in a manner that is both easy to use and easily accessible. HERA allows users to (a) choose flood-hazard scenarios based on sea level rise and storm assumptions, (b) appreciate the modeling uncertainty behind a chosen hazard zone, (c) select one or several communities to examine exposure, (d) select the category of population or societal asset, and (e) choose how to look at results. The application is designed to highlight comparisons between (a) varying levels of sea level rise and coastal storms, (b) communities, (c) societal asset categories, and (d) spatial scales. Through a combination of spatial and graphical visualizations, HERA aims to help individuals and organizations to craft more informed mitigation and adaptation strategies for climate-driven coastal hazards. This paper summarizes the technologies used to maximize the user experience, in terms of interface design, visualization approaches, and data processing.

Bloom syndrome helicase in meiosis: Pro-crossover functions of an anti-crossover protein.

Science.gov (United States)

Hatkevich, Talia; Sekelsky, Jeff

2017-09-01

The functions of the Bloom syndrome helicase (BLM) and its orthologs are well characterized in mitotic DNA damage repair, but their roles within the context of meiotic recombination are less clear. In meiotic recombination, multiple repair pathways are used to repair meiotic DSBs, and current studies suggest that BLM may regulate the use of these pathways. Based on literature from Saccharomyces cerevisiae, Arabidopsis thaliana, Mus musculus, Drosophila melanogaster, and Caenorhabditis elegans, we present a unified model for a critical meiotic role of BLM and its orthologs. In this model, BLM and its orthologs utilize helicase activity to regulate the use of various pathways in meiotic recombination by continuously disassembling recombination intermediates. This unwinding activity provides the meiotic program with a steady pool of early recombination substrates, increasing the probability for a DSB to be processed by the appropriate pathway. As a result of BLM activity, crossovers are properly placed throughout the genome, promoting proper chromosomal disjunction at the end of meiosis. This unified model can be used to further refine the complex role of BLM and its orthologs in meiotic recombination. © 2017 WILEY Periodicals, Inc.

The ZEUS uranium-scintillator calorimeter for HERA

International Nuclear Information System (INIS)

Hilger, E.

1987-01-01

The high resolution calorimeter for the ZEUS detector at HERA is presented. The choice of a sandwich calorimeter from depleted uranium plates and plastic scintillator was made to accomplish compensation and thus the best possible energy resolution for hadrons and jets. The calorimeter is segmented transversely into towers and longitudinally into an electromagnetic and one or two hadronic sections. It is divided in a forward, barrel and rear part which surround hermetically the interaction region and the inner detectors. The expected energy resolutions are for electrons σ(E)/E = 0.15/√E, and for hadrons σ(E)/E = 0.35/√E, with a constant term of maximum 2% added in quadrature. First results from calorimeter test measurements are presented. (orig.)

A determination of electroweak parameters at HERA

Science.gov (United States)

H1 Collaboration; Aktas, A.; Andreev, V.; Anthonis, T.; Aplin, S.; Asmone, A.; Astvatsatourov, A.; Babaev, A.; Backovic, S.; Bähr, J.; Baghdasaryan, A.; Baranov, P.; Barrelet, E.; Bartel, W.; Baudrand, S.; Baumgartner, S.; Becker, J.; Beckingham, M.; Behnke, O.; Behrendt, O.; Belousov, A.; Berger, Ch.; Berger, N.; Bizot, J. C.; Boenig, M.-O.; Boudry, V.; Bracinik, J.; Brandt, G.; Brisson, V.; Brown, D. P.; Bruncko, D.; Büsser, F. W.; Bunyatyan, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A. J.; Caron, S.; Cassol-Brunner, F.; Cerny, K.; Cerny, V.; Chekelian, V.; Contreras, J. G.; Coughlan, J. A.; Cox, B. E.; Cozzika, G.; Cvach, J.; Dainton, J. B.; Dau, W. D.; Daum, K.; de Boer, Y.; Delcourt, B.; de Roeck, A.; Desch, K.; de Wolf, E. A.; Diaconu, C.; Dodonov, V.; Dubak, A.; Eckerlin, G.; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Ellerbrock, M.; Erdmann, W.; Essenov, S.; Falkewicz, A.; Faulkner, P. J. W.; Favart, L.; Fedotov, A.; Felst, R.; Ferencei, J.; Finke, L.; Fleischer, M.; Fleischmann, P.; Fleming, Y. H.; Flucke, G.; Fomenko, A.; Foresti, I.; Franke, G.; Frisson, T.; Gabathuler, E.; Garutti, E.; Gayler, J.; Gerlich, C.; Ghazaryan, S.; Ginzburgskaya, S.; Glazov, A.; Glushkov, I.; Goerlich, L.; Goettlich, M.; Gogitidze, N.; Gorbounov, S.; Goyon, C.; Grab, C.; Greenshaw, T.; Gregori, M.; Grell, B. R.; Grindhammer, G.; Gwilliam, C.; Haidt, D.; Hajduk, L.; Hansson, M.; Heinzelmann, G.; Henderson, R. C. W.; Henschel, H.; Henshaw, O.; Herrera, G.; Hildebrandt, M.; Hiller, K. H.; Hoffmann, D.; Horisberger, R.; Hovhannisyan, A.; Hreus, T.; Hussain, S.; Ibbotson, M.; Ismail, M.; Jacquet, M.; Janauschek, L.; Janssen, X.; Jemanov, V.; Jönsson, L.; Johnson, D. P.; Jung, A. W.; Jung, H.; Kapichine, M.; Katzy, J.; Keller, N.; Kenyon, I. R.; Kiesling, C.; Klein, M.; Kleinwort, C.; Klimkovich, T.; Kluge, T.; Knies, G.; Knutsson, A.; Korbel, V.; Kostka, P.; Krastev, K.; Kretzschmar, J.; Kropivnitskaya, A.; Krüger, K.; Kückens, J.; Landon, M. P. J.; Lange, W.; Laštovička, T.; Laštovička-Medin, G.; Laycock, P.; Lebedev, A.; Leibenguth, G.; Lendermann, V.; Levonian, S.; Lindfeld, L.; Lipka, K.; Liptaj, A.; List, B.; Lobodzinska, E.; Loktionova, N.; Lopez-Fernandez, R.; Lubimov, V.; Lucaci-Timoce, A.-I.; Lueders, H.; Lüke, D.; Lux, T.; Lytkin, L.; Makankine, A.; Malden, N.; Malinovski, E.; Mangano, S.; Marage, P.; Marshall, R.; Martisikova, M.; Martyn, H.-U.; Maxfield, S. J.; Meer, D.; Mehta, A.; Meier, K.; Meyer, A. B.; Meyer, H.; Meyer, J.; Mikocki, S.; Milcewicz-Mika, I.; Milstead, D.; Mladenov, D.; Mohamed, A.; Moreau, F.; Morozov, A.; Morris, J. V.; Mozer, M. U.; Müller, K.; Murín, P.; Nankov, K.; Naroska, B.; Naumann, Th.; Newman, P. R.; Niebuhr, C.; Nikiforov, A.; Nikitin, D.; Nowak, G.; Nozicka, M.; Oganezov, R.; Olivier, B.; Olsson, J. E.; Osman, S.; Ozerov, D.; Palichik, V.; Panagoulias, I.; Papadopoulou, T.; Pascaud, C.; Patel, G. D.; Peez, M.; Perez, E.; Perez-Astudillo, D.; Perieanu, A.; Petrukhin, A.; Pitzl, D.; Plačakytė, R.; Portheault, B.; Povh, B.; Prideaux, P.; Raicevic, N.; Reimer, P.; Rimmer, A.; Risler, C.; Rizvi, E.; Robmann, P.; Roland, B.; Roosen, R.; Rostovtsev, A.; Rurikova, Z.; Rusakov, S.; Salvaire, F.; Sankey, D. P. C.; Sauvan, E.; Schätzel, S.; Schilling, F.-P.; Schmidt, S.; Schmitt, S.; Schmitz, C.; Schoeffel, L.; Schöning, A.; Schultz-Coulon, H.-C.; Sedlák, K.; Sefkow, F.; Shaw-West, R. N.; Sheviakov, I.; Shtarkov, L. N.; Sloan, T.; Smirnov, P.; Soloviev, Y.; South, D.; Spaskov, V.; Specka, A.; Stella, B.; Stiewe, J.; Strauch, I.; Straumann, U.; Tchoulakov, V.; Thompson, G.; Thompson, P. D.; Tomasz, F.; Traynor, D.; Truöl, P.; Tsakov, I.; Tsipolitis, G.; Tsurin, I.; Turnau, J.; Tzamariudaki, E.; Urban, M.; Usik, A.; Utkin, D.; Valkár, S.; Valkárová, A.; Vallée, C.; van Mechelen, P.; Vargas Trevino, A.; Vazdik, Y.; Veelken, C.; Vest, A.; Vinokurova, S.; Volchinski, V.; Vujicic, B.; Wacker, K.; Wagner, J.; Weber, G.; Weber, R.; Wegener, D.; Werner, C.; Werner, N.; Wessels, M.; Wessling, B.; Wigmore, C.; Wissing, Ch.; Wolf, R.; Wünsch, E.; Xella, S.; Yan, W.; Yeganov, V.; Žáček, J.; Zálešák, J.; Zhang, Z.; Zhelezov, A.; Zhokin, A.; Zhu, Y. C.; Zimmermann, J.; Zimmermann, T.; Zohrabyan, H.; Zomer, F.

2006-01-01

Using the deep inelastic ep and ep charged and neutral current scattering cross sections previously published, a combined electroweak and QCD analysis is performed to determine electroweak parameters accounting for their correlation with parton distributions. The data used have been collected by the H1 experiment in 1994 2000 and correspond to an integrated luminosity of 117.2 pb. A measurement is obtained of the W propagator mass in charged current ep scattering. The weak mixing angle sinθ is determined in the on-mass-shell renormalisation scheme. A first measurement at HERA is made of the light quark weak couplings to the Z boson and a possible contribution of right-handed isospin components to the weak couplings is investigated.

A Determination of Electroweak Parameters at HERA

CERN Document Server

Aktas, A.; Anthonis, T.; Aplin, S.; Asmone, A.; Astvatsatourov, A.; Babaev, A.; Backovic, S.; Bahr, J.; Baghdasaryan, A.; Baranov, P.; Barrelet, E.; Bartel, W.; Baudrand, S.; Baumgartner, S.; Becker, J.; Beckingham, M.; Behnke, O.; Behrendt, O.; Belousov, A.; Berger, Ch.; Berger, N.; Bizot, J.C.; Boenig, M.-O.; Boudry, V.; Bracinik, J.; Brandt, G.; Brisson, V.; Brown, D.P.; Bruncko, D.; Busser, F.W.; Bunyatyan, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Caron, S.; Cassol-Brunner, F.; Cerny, K.; Cerny, V.; Chekelian, V.; Contreras, J.G.; Coughlan, J.A.; Cox, B.E.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Dau, W.D.; Daum, K.; de Boer, Y.; Delcourt, B.; De Roeck, A.; Desch, K.; De Wolf, E.A.; Diaconu, C.; Dodonov, V.; Dubak, A.; Eckerlin, Guenter; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Ellerbrock, M.; Erdmann, W.; Essenov, S.; Falkewicz, A.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Felst, R.; Ferencei, J.; Finke, L.; Fleischer, M.; Fleischmann, P.; Fleming, Y.H.; Flucke, G.; Fomenko, A.; Foresti, I.; Franke, G.; Frisson, T.; Gabathuler, E.; Garutti, E.; Gayler, J.; Gerlich, C.; Ghazaryan, Samvel; Ginzburgskaya, S.; Glazov, A.; Glushkov, I.; Goerlich, L.; Goettlich, M.; Gogitidze, N.; Gorbounov, S.; Goyon, C.; Grab, C.; Greenshaw, T.; Gregori, M.; Grell, B.R.; Grindhammer, Guenter; Gwilliam, C.; Haidt, D.; Hajduk, L.; Hansson, M.; Heinzelmann, G.; Henderson, R.C.W.; Henschel, H.; Henshaw, O.; Herrera, G.; Hildebrandt, M.; Hiller, K.H.; Hoffmann, D.; Horisberger, R.; Hovhannisyan, A.; Hreus, T.; Hussain, S.; Ibbotson, M.; Ismail, M.; Jacquet, M.; Janauschek, L.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, D.P.; Jung, Andreas Werner; Jung, H.; Kapichine, M.; Katzy, J.; Keller, N.; Kenyon, I.R.; Kiesling, Christian M.; Klein, M.; Kleinwort, C.; Klimkovich, T.; Kluge, T.; Knies, G.; Knutsson, A.; Korbel, V.; Kostka, P.; Krastev, K.; Kretzschmar, J.; Kropivnitskaya, A.; Kruger, K.; Kuckens, J.; Landon, M.P.J.; Lange, W.; Lastovicka, T.; Lastovicka-Medin, G.; Laycock, P.; Lebedev, A.; Leibenguth, G.; Lendermann, V.; Levonian, S.; Lindfeld, L.; Lipka, K.; Liptaj, A.; List, B.; Lobodzinska, E.; Loktionova, N.; Lopez-Fernandez, R.; Lubimov, V.; Lucaci-Timoce, A.-I.; Lueders, H.; Luke, D.; Lux, T.; Lytkin, L.; Makankine, A.; Malden, N.; Malinovski, E.; Mangano, S.; Marage, P.; Marshall, R.; Martisikova, M.; Martyn, H.-U.; Maxeld, S.J.; Meer, D.; Mehta, A.; Meier, K.; Meyer, A.B.; Meyer, H.; Meyer, J.; Mikocki, S.; Milcewicz-Mika, I.; Milstead, D.; Mladenov, D.; Mohamed, A.; Moreau, F.; Morozov, A.; Morris, J.V.; Mozer, Matthias Ulrich; Muller, K.; Murin, P.; Nankov, K.; Naroska, B.; Naumann, Th.; Newman, Paul R.; Niebuhr, C.; Nikiforov, A.; Nikitin, D.; Nowak, G.; Nozicka, M.; Oganezov, R.; Olivier, B.; Olsson, J.E.; Osman, S.; Ozerov, D.; Palichik, V.; Panagoulias, I.; Papadopoulou, T.; Pascaud, C.; Patel, G.D.; Peez, M.; Perez, E.; Perez-Astudillo, D.; Perieanu, A.; Petrukhin, A.; Pitzl, D.; Placakyte, R.; Portheault, B.; Povh, B.; Prideaux, P.; Raicevic, N.; Reimer, P.; Rimmer, A.; Risler, C.; Rizvi, E.; Robmann, P.; Roland, B.; Roosen, R.; Rostovtsev, A.; Rurikova, Z.; Rusakov, S.; Salvaire, F.; Sankey, D.P.C.; Sauvan, E.; Schatzel, S.; Schilling, F.-P.; Schmidt, S.; Schmitt, S.; Schmitz, C.; Schoeffel, L.; Schoning, A.; Schultz-Coulon, H.-C.; Sedlak, K.; Sefkow, F.; Shaw-West, R.N.; Sheviakov, I.; Shtarkov, L.N.; Sloan, T.; Smirnov, P.; Soloviev, Y.; South, D.; Spaskov, V.; Specka, Arnd E.; Stella, B.; Stiewe, J.; Strauch, I.; Straumann, U.; Tchoulakov, V.; Thompson, Graham; Thompson, P.D.; Tomasz, F.; Traynor, D.; Truoel, Peter; Tsakov, I.; Tsipolitis, G.; Tsurin, I.; Turnau, J.; Tzamariudaki, E.; Urban, Marcel; Usik, A.; Utkin, D.; Valkar, S.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Vargas Trevino, A.; Vazdik, Y.; Veelken, C.; Vest, A.; Vinokurova, S.; Volchinski, V.; Vujicic, B.; Wacker, K.; Wagner, J.; Weber, G.; Weber, R.; Wegener, D.; Werner, C.; Werner, N.; Wessels, M.; Wessling, B.; Wigmore, C.; Wissing, Ch.; Wolf, R.; Wunsch, E.; Xella, S.; Yan, W.; Yeganov, V.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhelezov, A.; Zhokin, A.; Zhu, Y.C.; Zimmermann, J.; Zimmermann, T.; Zohrabyan, H.; Zomer, F.

2006-01-01

Using the deep inelastic e^+p and e^-p charged and neutral current scattering cross sections previously published, a combined electroweak and QCD analysis is performed to determine electroweak parameters accounting for their correlation with parton distributions. The data used have been collected by the H1 experiment in 1994-2000 and correspond to an integrated luminosity of 117.2 pb^{-1}. A measurement is obtained of the W propagator mass in charged current ep scattering. The weak mixing angle sin^2 theta_W is determined in the on-mass-shell renormalisation scheme. A first measurement at HERA is made of the light quark weak couplings to the Z^0 boson and a possible contribution of right-handed isospin components to the weak couplings is investigated.

RTEL1: functions of a disease-associated helicase.

Science.gov (United States)

Vannier, Jean-Baptiste; Sarek, Grzegorz; Boulton, Simon J

2014-07-01

DNA secondary structures that arise during DNA replication, repair, and recombination (3R) must be processed correctly to prevent genetic instability. Regulator of telomere length 1 (RTEL1) is an essential DNA helicase that disassembles a variety of DNA secondary structures to facilitate 3R processes and to maintain telomere integrity. The past few years have witnessed the emergence of RTEL1 variants that confer increased susceptibility to high-grade glioma, astrocytomas, and glioblastomas. Mutations in RTEL1 have also been implicated in Hoyeraal-Hreidarsson syndrome, a severe form of the bone-marrow failure and cancer predisposition disorder, dyskeratosis congenita. We review these recent findings and highlight its crucial link between DNA secondary-structure metabolism and human disease. Copyright © 2014 Elsevier Ltd. All rights reserved.

Progress in the NNPDF global analysis and the impact of the legacy HERA combination

NARCIS (Netherlands)

Rojo, Juan

2015-01-01

The H1 and ZEUS collaborations have recently presented their final results for the combination of inclusive cross-section measurements taken during Run I and Run II at the HERA collider. In this contribution, following an overview of recent progress in the NNPDF framework, we quantify the impact of

Superconducting magnets for HERA

International Nuclear Information System (INIS)

Wolff, S.

1987-01-01

The Hadron-Electron-Ring Accelerator (HERA) presently under construction at DESY, Hamburg, consists of an electron storage ring of 30 GeV and a proton storage ring of 820 GeV. Superconducting magnets are used for the proton ring. There are 416 superconducting bending magnets of 4.698 T central field and 8.824 m magnetic length, 224 superconducting quadrupoles of 91.2 T/m central gradient and many superconducting correction dipoles, quadrupoles and sextupoles. The main dipoles and quadrupoles consist of two-layer coils of 75 mm inner diameter clammed with aluminium (for the dipoles) or stainless steel laminations (for the quadrupoles). The collared coils are surrounded by a laminated cold iron yoke and supported inside a low loss cryostat. The protection system uses cold diodes to bypass the current around a quenching magnet. The magnets are cooled with one phase helium supplied by a 3 block central refrigeration system of 20 kW refrigeration power at 4.3 K. Two helium is returned through the magnets in good thermal contact with the one phase helium in the dipoles for temperature control. This paper describes the magnet system and gives the results obtained for prototype magnets

Scaled momentum distributions of charged particles in dijet photoproduction at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2009-04-01

The scaled momentum distributions of charged particles in jets have been measured for dijet photoproduction with the ZEUS detector at HERA using an integrated luminosity of 359 pb -1 . The distributions are compared to predictions based on perturbative QCD carried out in the framework of the modified leading-logarithmic approximation (MLLA) and assuming local parton-hadron duality (LPHD). The universal MLLA scale, Λ eff , and the LPHD parameter, κ ch , are extracted. (orig.)

Measurement of the t dependence in exclusive photoproduction of Upsilon(1S) mesons at HERA

CERN Document Server

Abramowicz, H.

2012-02-14

The exclusive photoproduction reaction gamma p -> Upsilon(1S) p has been studied with the ZEUS detector in ep collisions at HERA using an integrated luminosity of 468 pb^-1. The measurement covers the kinematic range 60 Upsilon(1S) p cross section.

RecQL5 promotes genome stabilization through two parallel mechanisms--interacting with RNA polymerase II and acting as a helicase.

Science.gov (United States)

Islam, M Nurul; Fox, David; Guo, Rong; Enomoto, Takemi; Wang, Weidong

2010-05-01

The RecQL5 helicase is essential for maintaining genome stability and reducing cancer risk. To elucidate its mechanism of action, we purified a RecQL5-associated complex and identified its major component as RNA polymerase II (Pol II). Bioinformatics and structural modeling-guided mutagenesis revealed two conserved regions in RecQL5 as KIX and SRI domains, already known in transcriptional regulators for Pol II. The RecQL5-KIX domain binds both initiation (Pol IIa) and elongation (Pol IIo) forms of the polymerase, whereas the RecQL5-SRI domain interacts only with the elongation form. Fully functional RecQL5 requires both helicase activity and associations with the initiation polymerase, because mutants lacking either activity are partially defective in the suppression of sister chromatid exchange and resistance to camptothecin-induced DNA damage, and mutants lacking both activities are completely defective. We propose that RecQL5 promotes genome stabilization through two parallel mechanisms: by participation in homologous recombination-dependent DNA repair as a RecQ helicase and by regulating the initiation of Pol II to reduce transcription-associated replication impairment and recombination.

Physical interaction of RECQ5 helicase with RAD51 facilitates its anti-recombinase activity

Czech Academy of Sciences Publication Activity Database

Schwendener, S.; Raynard, S.; Paliwal, S.; Cheng, A.; Kanagaraj, R.; Shevelev, Igor; Stark, J.M.; Sung, P.; Janscak, P.

2010-01-01

Roč. 285, č. 21 (2010), s. 15739-15745 ISSN 0021-9258 Grant - others:NIH(US) R01CA120954; NIH(US) ES015632; SNSF(CH) 3100A0-116008 Institutional research plan: CEZ:AV0Z50520514 Keywords : DNA helicase * double-strand breaks * homologous recombination Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 5.328, year: 2010

Relocalization of nuclear DNA helicase II during the growth period of bovine oocytes

Czech Academy of Sciences Publication Activity Database

Baran, V.; Kovářová, Hana; Klíma, Jiří; Hozák, Pavel; Motlík, Jan

2006-01-01

Roč. 125, 1-2 (2006), s. 155-164 ISSN 0948-6143 R&D Projects: GA ČR GA523/03/0857 Grant - others:Slovenská Akademie věd(SK) VEGA 2/3065/23 Institutional research plan: CEZ:AV0Z50450515; CEZ:AV0Z50390512 Keywords : DNA helicase II * fibroblasts * oocytes Subject RIV: EB - Genetics ; Molecular Biology Impact factor : 3.220, year: 2006

Air tight electrical box

Energy Technology Data Exchange (ETDEWEB)

Pringle, C.G.

1990-08-14

An air-impervious electrical box to facilitate air sealing a house comprises an integral, rigid box body having a continuous flange, integral with the body, circumscribing and outwardly extending from the sides of the body. This flange is rearwardly positioned behind the front edges of the sides of the body a predetermined distance so that the electrical box may be secured to framing by nailing through the flange. Drywall is then secured to the frame on top of and adjecent to the flange. Such box eliminates the necessity for solid backing and minimizes passage of air through the box and space between the drywall and the box.

A 110 m long prototype helium transfer line for the HERA project

International Nuclear Information System (INIS)

Horvath, I.; Ming, P.; Von Burg, M.; Horlitz, G.; Sindt, H.

1986-01-01

A prototype helium transfer line of 110-m length was designed and constructed at SIN for the HERA project. This rendered a study of the assembly and handling processes as well as the determination of the heat losses into the transfer line. In this paper the transfer line structure is described and first results of heat transfer measurement for the specially developed super-insulation are presented

New roles of the human Suv3 helicase in genome maintenance

DEFF Research Database (Denmark)

Venø, Susanne Trillingsgaard

During her PhD studies, Susanne Trillingsgaard Venø carried out research into the role of the human Suv3 protein in stabilising the human genome – DNA. Suv3 is a helicase that separates the two strands of the DNA’s double helix. Throughout our lives, the DNA in our cells is constantly exposed...... maintenance. Based on these new research results, the Suv3 protein could be a valuable model for genome stability as an important factor in our understanding of why we get old....

An iterative method for the analysis of Cherenkov rings in the HERA-B RICH

International Nuclear Information System (INIS)

Staric, M.; Krizan, P.

1999-01-01

A new method is presented for the analysis of data recorded with a Ring Imaging Cherenkov (RICH) counter. The method, an iterative sorting of hits on the photon detector, is particularly useful for events where rings overlap considerably. The algorithm was tested on simulated data for the HERA-B experiment

Hunting Down Interpretations of the HERA Large-$Q^{2}$ data

CERN Document Server

Ellis, John R.

1999-01-01

Possible interpretations of the HERA large-Q^2 data are reviewed briefly. The possibility of statistical fluctuations cannot be ruled out, and it seems premature to argue that the H1 and ZEUS anomalies are incompatible. The data cannot be explained away by modifications of parton distributions, nor do contact interactions help. A leptoquark interpretation would need a large tau-q branching ratio. Several R-violating squark interpretations are still viable despite all the constraints, and offer interesting experimental signatures, but please do not hold your breath.

Acute inactivation of the replicative helicase in human cells triggers MCM8-9-dependent DNA synthesis

DEFF Research Database (Denmark)

Natsume, Toyoaki; Nishimura, Kohei; Minocherhomji, Sheroy

2017-01-01

stemming from replisome dissociation during DNA replication perturbation, we used a degron-based system for inducible proteolysis of a subunit of the replicative helicase. We show that MCM2-depleted cells activate a DNA damage response pathway and generate replication-associated DNA double-strand breaks...

Molecular architecture of the recombinant human MCM2-7 helicase in complex with nucleotides and DNA

DEFF Research Database (Denmark)

Boskovic, Jasminka; Bragado-Nilsson, Elisabeth; Saligram Prabhakar, Bhargav

2016-01-01

DNA replication is a key biological process that involves different protein complexes whose assembly is rigorously regulated in a successive order. One of these complexes is a replicative hexameric helicase, the MCM complex, which is essential for the initiation and elongation phases of replicati...

Charged particle multiplicities in deep inelastic scattering at HERA

International Nuclear Information System (INIS)

Aid, S.; Anderson, M.; Andreev, V.

1996-08-01

Using the H1 detector at HERA, charged particle multiplicity distributions in deep inelastic e + p scattering have been measured over a large kinematical region. The evolution with W and Q 2 of the multiplicity distribution and of the multiplicity moments in pseudorapidity domains of varying size is studied in the current fragmentation region of the hadronic centre-of-mass frame. The results are compared with data from fixed target lepton-nucleon interactions, e + e - annihilations and hadron-hadron collisions as well as with expectations from QCD based parton models. Fits to the negative binomial and lognormal distributions are presented. (orig.)

Leading proton production in deep inelastic scattering at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2008-12-01

The semi-inclusive reaction e + p→e + Xp was studied with the ZEUS detector at HERA using an integrated luminosity of 12.8 pb -1 . The final-state proton, which was detected with the ZEUS leading proton spectrometer, carried a large fraction of the incoming proton energy, x L >0.32, and its transverse momentum squared satisfied p T 2 2 ; the exchanged photon virtuality, Q 2 , was greater than 3 GeV 2 and the range of the masses of the photon-proton system was 45 L , p T 2 , Q 2 and the Bjorken scaling variable, x. (orig.)

Jets and diffraction results from HERA

International Nuclear Information System (INIS)

Buniatyan, A.

2014-01-01

The latest results on precision measurements of jet and diffractive cross sections obtained by the H1 and ZEUS experiments at HERA are reported. The inclusive jet and multi-jet cross-sections are used in QCD calculations at next-to-leading order (NLO) to determine the strong coupling α s . The cross-section measurements for diffractive inclusive DIS processes with a leading proton in the final state are combined for the H1 and ZEUS experiments in order to improve the precision and extend the kinematic range. The di-jet cross sections are measured in diffractive DIS with a leading proton and compared with QCD predictions based on diffractive parton densities in the proton. The cross sections for exclusive heavy vector meson photoproduction are studied in terms of the momentum transfer at the proton vertex and of the photon-proton centre-of-mass energy. (author)

Exclusive vector meson production at HERA

Energy Technology Data Exchange (ETDEWEB)

Szuba, Dorota [Hamburg University, Hamburg (Germany); Collaboration: H1 Collaboration; ZEUS Collaboration

2013-04-15

The exclusive photoproduction of {Upsilon} has been studied with the ZEUS detector in ep collisions at HERA. The exponential slope, b, of the |t|-dependence of the cross section, where t is the squared four-momentum transfer at the proton vertex, has been measured. This constitutes the first measurement of the |t|-dependence of the {gamma}p{yields}{Upsilon}p cross section. The differential crosssections as a function of t at lower energies of {gamma}p centre-of-mass has been studied in exclusive diffractive photoproduction of J/{psi} mesons with the H1 detector. The exclusive electroproduction of two pions has been measured by the ZEUS experiment. The two-pion invariant-mass distribution is interpreted in terms of the pion electromagnetic form factor, assuming that the studied mass range includes the contributions of the {rho}, {rho} Prime and . {rho}'' vector-meson states.

A temperature-sensitive allele of a putative mRNA splicing helicase down-regulates many cell wall genes and causes radial swelling in Arabidopsis thaliana.

Science.gov (United States)

Howles, Paul A; Gebbie, Leigh K; Collings, David A; Varsani, Arvind; Broad, Ronan C; Ohms, Stephen; Birch, Rosemary J; Cork, Ann H; Arioli, Tony; Williamson, Richard E

2016-05-01

The putative RNA helicase encoded by the Arabidopsis gene At1g32490 is a homolog of the yeast splicing RNA helicases Prp2 and Prp22. We isolated a temperature-sensitive allele (rsw12) of the gene in a screen for root radial swelling mutants. Plants containing this allele grown at the restrictive temperature showed weak radial swelling, were stunted with reduced root elongation, and contained reduced levels of cellulose. The role of the protein was further explored by microarray analysis. By using both fold change cutoffs and a weighted gene coexpression network analysis (WGCNA) to investigate coexpression of genes, we found that the radial swelling phenotype was not linked to genes usually associated with primary cell wall biosynthesis. Instead, the mutation has strong effects on expression of secondary cell wall related genes. Many genes potentially associated with secondary walls were present in the most significant WGCNA module, as were genes coding for arabinogalactans and proteins with GPI anchors. The proportion of up-regulated genes that possess introns in rsw12 was above that expected if splicing was unrelated to the activity of the RNA helicase, suggesting that the helicase does indeed play a role in splicing in Arabidopsis. The phenotype may be due to a change in the expression of one or more genes coding for cell wall proteins.

Scaled momentum distributions of charged particles in dijet photoproduction at HERA

Energy Technology Data Exchange (ETDEWEB)

Chekanov, S.; Derrick, M.; Magill, S. [Argonne National Lab., Argonne, IL (US)] (and others)

2009-04-15

The scaled momentum distributions of charged particles in jets have been measured for dijet photoproduction with the ZEUS detector at HERA using an integrated luminosity of 359 pb{sup -1}. The distributions are compared to predictions based on perturbative QCD carried out in the framework of the modified leading-logarithmic approximation (MLLA) and assuming local parton-hadron duality (LPHD). The universal MLLA scale, {lambda}{sub eff}, and the LPHD parameter, {kappa}{sup ch}, are extracted. (orig.)

G-quadruplexes Significantly Stimulate Pif1 Helicase-catalyzed Duplex DNA Unwinding*

Science.gov (United States)

Duan, Xiao-Lei; Liu, Na-Nv; Yang, Yan-Tao; Li, Hai-Hong; Li, Ming; Dou, Shuo-Xing; Xi, Xu-Guang

2015-01-01

The evolutionarily conserved G-quadruplexes (G4s) are faithfully inherited and serve a variety of cellular functions such as telomere maintenance, gene regulation, DNA replication initiation, and epigenetic regulation. Different from the Watson-Crick base-pairing found in duplex DNA, G4s are formed via Hoogsteen base pairing and are very stable and compact DNA structures. Failure of untangling them in the cell impedes DNA-based transactions and leads to genome instability. Cells have evolved highly specific helicases to resolve G4 structures. We used a recombinant nuclear form of Saccharomyces cerevisiae Pif1 to characterize Pif1-mediated DNA unwinding with a substrate mimicking an ongoing lagging strand synthesis stalled by G4s, which resembles a replication origin and a G4-structured flap in Okazaki fragment maturation. We find that the presence of G4 may greatly stimulate the Pif1 helicase to unwind duplex DNA. Further studies reveal that this stimulation results from G4-enhanced Pif1 dimerization, which is required for duplex DNA unwinding. This finding provides new insights into the properties and functions of G4s. We discuss the observed activation phenomenon in relation to the possible regulatory role of G4s in the rapid rescue of the stalled lagging strand synthesis by helping the replicator recognize and activate the replication origin as well as by quickly removing the G4-structured flap during Okazaki fragment maturation. PMID:25627683

Combined QCD and electroweak analysis of HERA data

Energy Technology Data Exchange (ETDEWEB)

Abramowicz, H. [Tel Aviv Univ. (Israel). School of Physics; Max-Planck-Institute for Physics, Munich (Germany); Abt, I. [Max-Planck-Institute for Physics, Munich (Germany); Adamczyk, L. [AGH-Univ. of Science and Technology, Krakow (Poland). Faculty of Physics and Applied Computer Science; Collaboration: ZEUS Collaboration; and others

2016-03-15

A simultaneous fit of parton distribution functions (PDFs) and electroweak parameters to HERA data on deep inelastic scattering is presented. The input data are the neutral current and charged current inclusive cross sections which were previously used in the QCD analysis leading to the HERAPDF2.0 PDFs. In addition, the polarisation of the electron beam was taken into account for the ZEUS data recorded between 2004 and 2007. Results on the vector and axial-vector couplings of the Z boson to u- and d-type quarks, on the value of the electroweak mixing angle and the mass of the W boson are presented. The values obtained for the electroweak parameters are in agreement with Standard Model predictions.

Subjet distributions in deep inelastic scattering at HERA

Energy Technology Data Exchange (ETDEWEB)

Chekanov, S.; Derrick, M.; Magill, S. [Argonne National Lab., Argonne, IL (US)] (and others)

2008-12-15

Subjet distributions were measured in neutral current deep inelastic ep scattering with the ZEUS detector at HERA using an integrated luminosity of 81.7 pb{sup -1}. Jets were identified using the k{sub T} cluster algorithm in the laboratory frame. Sub-jets were defined as jet-like substructures identified by a reapplication of the cluster algorithm at a smaller value of the resolution parameter y{sub cut}. Measurements of subjet distributions for jets with exactly two subjets for y{sub cut}=0.05 are presented as functions of observables sensitive to the pattern of parton radiation and to the colour coherence between the initial and final states. Perturbative QCD predictions give an adequate description of the data. (orig.)

Combined QCD and electroweak analysis of HERA data

International Nuclear Information System (INIS)

Abramowicz, H.; Abt, I.; Adamczyk, L.

2016-03-01

A simultaneous fit of parton distribution functions (PDFs) and electroweak parameters to HERA data on deep inelastic scattering is presented. The input data are the neutral current and charged current inclusive cross sections which were previously used in the QCD analysis leading to the HERAPDF2.0 PDFs. In addition, the polarisation of the electron beam was taken into account for the ZEUS data recorded between 2004 and 2007. Results on the vector and axial-vector couplings of the Z boson to u- and d-type quarks, on the value of the electroweak mixing angle and the mass of the W boson are presented. The values obtained for the electroweak parameters are in agreement with Standard Model predictions.

Subjet distributions in deep inelastic scattering at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2008-12-01

Subjet distributions were measured in neutral current deep inelastic ep scattering with the ZEUS detector at HERA using an integrated luminosity of 81.7 pb -1 . Jets were identified using the k T cluster algorithm in the laboratory frame. Sub-jets were defined as jet-like substructures identified by a reapplication of the cluster algorithm at a smaller value of the resolution parameter y cut . Measurements of subjet distributions for jets with exactly two subjets for y cut =0.05 are presented as functions of observables sensitive to the pattern of parton radiation and to the colour coherence between the initial and final states. Perturbative QCD predictions give an adequate description of the data. (orig.)

Combined QCD and electroweak analysis of HERA data

CERN Document Server

Abramowicz, H; Adamczyk, L; Adamus, M; Antonelli, S; Aushev, V; Behnke, O; Behrens, U; Bertolin, A; Bloch, I; Boos, EG; Brock, I; Brook, NH; Brugnera, R; Bruni, A; Bussey, PJ; Caldwell, A; Capua, M; Catterall, CD; Chwastowski, J; Ciborowski, J; Ciesielski, R; Cooper-Sarkar, AM; Corradi, M; Dementiev, RK; Devenish, RCE; Dusini, S; Foster, B; Gach, G; Gallo, E; Garfagnini, A; Geiser, A; Gizhko, A; Gladilin, LK; Golubkov, Yu A; Grzelak, G; Guzik, M; Hain, W; Hochman, D; Hori, R; Ibrahim, ZA; Iga, Y; Ishitsuka, M; Januschek, F; Jomhari, NZ; Kadenko, I; Kananov, S; Karshon, U; Kaur, P; Kisielewska, D; Klanner, R; Klein, U; Korzhavina, IA; Kotański, A; Kötz, U; Kovalchuk, N; Kowalski, H; Krupa, B; Kuprash, O; Kuze, M; Levchenko, BB; Levy, A; Limentani, S; Lisovyi, M; Lobodzinska, E; Löhr, B; Lohrmann, E; Longhin, A; Lontkovskyi, D; Lukina, OYu; Makarenko, I; Malka, J; Mohamad Idris, F; Mohammad Nasir, N; Myronenko, V; Nagano, K; Nobe, T; Nowak, RJ; Onishchuk, Yu; Paul, E; Perlański, W; Pokrovskiy, NS; Przybycien, M; Roloff, P; Ruspa, M; Saxon, DH; Schioppa, M; Schneekloth, U; Schörner-Sadenius, T; Shcheglova, LM; Shevchenko, R; Shkola, O; Shyrma, Yu; Singh, I; Skillicorn, IO; Słomiński, W; Solano, A; Stanco, L; Stefaniuk, N; Stern, A; Stopa, P; Sztuk-Dambietz, J; Tassi, E; Tokushuku, K; Tomaszewska, J; Tsurugai, T; Turcato, M; Turkot, O; Tymieniecka, T; Verbytskyi, A; Wan Abdullah, WAT; Wichmann, K; Wing, M; Yamada, S; Yamazaki, Y; Zakharchuk, N; Żarnecki, AF; Zawiejski, L; Zenaiev, O; Zhautykov, BO; Zotkin, DS; Bhadra, S; Gwenlan, C; Hlushchenko, O; Polini, A; Mastroberardino, A

2016-05-03

A simultaneous fit of parton distribution functions (PDFs) and electroweak parameters to HERA data on deep inelastic scattering is presented. The input data are the neutral current and charged current inclusive cross sections which were previously used in the QCD analysis leading to the HERAPDF2.0 PDFs. In addition, the polarisation of the electron beam was taken into account for the ZEUS data recorded between 2004 and 2007. Results on the vector and axial-vector couplings of the Z boson to u- and d-type quarks, on the value of the electroweak mixing angle and the mass of the W boson are presented. The values obtained for the electroweak parameters are in agreement with Standard Model predictions.

The process e-p→γep as a fast luminosity monitor for the HERA-collider

International Nuclear Information System (INIS)

Gaemers, K.J.F.; Horst, M. van der

1988-09-01

The process e - →γe - p as a fast luminosity monitor for HERA. Results are given and discussed for the differential cross-sections and the integrated cross-section. It is possible to use expressions derived in the form of an event generator. 7 refs.; 4 figs

Hera-FFX: a Firefox add-on for Semi-automatic Web Accessibility Evaluation

OpenAIRE

Fuertes Castro, José Luis; González, Ricardo; Gutiérrez, Emmanuelle; Martínez Normand, Loïc

2009-01-01

Website accessibility evaluation is a complex task requiring a combination of human expertise and software support. There are several online and offline tools to support the manual web accessibility evaluation process. However, they all have some weaknesses because none of them includes all the desired features. In this paper we present Hera-FFX, an add-on for the Firefox web browser that supports semi-automatic web accessibility evaluation.

Using HERA data to determine the infrared behaviour of the BFKL amplitude

International Nuclear Information System (INIS)

Kowalski, H.; Lipatov, L.N.; Hamburg Univ.; Ross, D.A.; Watt, G.

2010-11-01

We determine the infrared behaviour of the BFKL forward amplitude for gluon-gluon scattering. Our approach, based on the discrete pomeron solution, leads to an excellent description of the new combined inclusive HERA data at low values of x ( 2 . The phases of this amplitude are sensitive to the non-perturbative gluonic dynamics and could be sensitive to the presence of Beyond-the- Standard-Model particles at very high energies. (orig.)

ECFA Meeting in May: LEP project changes / Backing for HERA / HEP in Europe

International Nuclear Information System (INIS)

Anon.

1980-01-01

The European Committee for Future Accelerators held a Plenary Meeting at CERN on 9 May. The representatives of the Universities and Laboratories in the CERN Member States heard presentations on the latest developments concerning the LEP project at CERN. They supported a recommendation on the HERA project at DESY and they endorsed a detailed report on high energy physics in Europe

QCD expectations for deep inelastic scattering at small x and their phenomenological implications for HERA

International Nuclear Information System (INIS)

Kwiecinski, J.

1994-05-01

The basic QCD expectations concerning the deep inelastic scattering at low x where x is the Bjorken scaling variable are reviewed. This includes discussion of the BFKL equation which sums the leading powers of ln (1/x) and the shadowing effects. Phenomenological implications of the theoretical expectations for the deep inelastic lepton-hadron scattering in the small x region which has become accessible at the HERA ep collider are described. We give predictions for structure functions F 2 which are based on the BFKL equation and the high energy k T factorization theorem. These predictions are compared with the results of structure function analysis based on Altarelli-Parisi evolution equations and confronted with the recent data from HERA. We discuss jet production and transverse energy flow in deep inelastic lepton scattering as the measurements which may be particularly suitable for revealing the QCD dynamics at small x. (author). 37 refs, 4 figs

Heteroduplex DNA position defines the roles of the Sgs1, Srs2, and Mph1 helicases in promoting distinct recombination outcomes.

Directory of Open Access Journals (Sweden)

Katrina Mitchel

Full Text Available The contributions of the Sgs1, Mph1, and Srs2 DNA helicases during mitotic double-strand break (DSB repair in yeast were investigated using a gap-repair assay. A diverged chromosomal substrate was used as a repair template for the gapped plasmid, allowing mismatch-containing heteroduplex DNA (hDNA formed during recombination to be monitored. Overall DSB repair efficiencies and the proportions of crossovers (COs versus noncrossovers (NCOs were determined in wild-type and helicase-defective strains, allowing the efficiency of CO and NCO production in each background to be calculated. In addition, the products of individual NCO events were sequenced to determine the location of hDNA. Because hDNA position is expected to differ depending on whether a NCO is produced by synthesis-dependent-strand-annealing (SDSA or through a Holliday junction (HJ-containing intermediate, its position allows the underlying molecular mechanism to be inferred. Results demonstrate that each helicase reduces the proportion of CO recombinants, but that each does so in a fundamentally different way. Mph1 does not affect the overall efficiency of gap repair, and its loss alters the CO-NCO by promoting SDSA at the expense of HJ-containing intermediates. By contrast, Sgs1 and Srs2 are each required for efficient gap repair, strongly promoting NCO formation and having little effect on CO efficiency. hDNA analyses suggest that all three helicases promote SDSA, and that Sgs1 and Srs2 additionally dismantle HJ-containing intermediates. The hDNA data are consistent with the proposed role of Sgs1 in the dissolution of double HJs, and we propose that Srs2 dismantles nicked HJs.

FBH1 Helicase Disrupts RAD51 Filaments in Vitro and Modulates Homologous Recombination in Mammalian Cells

Czech Academy of Sciences Publication Activity Database

Šimandlová, Jitka; Zagelbaum, J.; Payne, M.J.; Chu, W.K.; Shevelev, Igor; Hanada, K.; Chatterjee, S.; Reid, D.A.; Liu, Y.; Janščák, Pavel; Rothenberg, E.; Hickson, I.D.

2013-01-01

Roč. 288, č. 47 (2013), s. 34168-34180 ISSN 0021-9258 R&D Projects: GA ČR GAP305/10/0281 Institutional support: RVO:68378050 Keywords : DNA damage * DNA helicase * DNA recombination * DNA repair * DNA replication Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 4.600, year: 2013

Regulation of gene expression by the BLM helicase correlates with the presence of G-quadruplex DNA motifs

DEFF Research Database (Denmark)

Nguyen, Giang Huong; Tang, Weiliang; Robles, Ana I

2014-01-01

Bloom syndrome is a rare autosomal recessive disorder characterized by genetic instability and cancer predisposition, and caused by mutations in the gene encoding the Bloom syndrome, RecQ helicase-like (BLM) protein. To determine whether altered gene expression might be responsible for pathologic...

Search for Light Gravitinos in Events with Photons and Missing Transverse Momentum at HERA

CERN Document Server

Aktas, A.; Anthonis, T.; Asmone, A.; Babaev, A.; Backovic, S.; Bahr, J.; Baranov, P.; Barrelet, E.; Bartel, W.; Baumgartner, S.; Becker, J.; Beckingham, M.; Behnke, O.; Behrendt, O.; Belousov, A.; Berger, Ch.; Berger, N.; Berndt, T.; Bizot, J.C.; Bohme, J.; Boenig, M.-O.; Boudry, V.; Bracinik, J.; Brisson, V.; Broker, H.-B.; Brown, D.P.; Bruncko, D.; Busser, F.W.; Bunyatyan, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Caron, S.; Cassol-Brunner, F.; Cerny, K.; Chekelian, V.; Contreras, J.G.; Coppens, Y.R.; Coughlan, J.A.; Cox, B.E.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Dau, W.D.; Daum, K.; Delcourt, B.; Demirchyan, R.; De Roeck, A.; Desch, K.; De Wolf, E.A.; Diaconu, C.; Dingfelder, J.; Dodonov, V.; Dubak, A.; Duprel, C.; Eckerlin, Guenter; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Ellerbrock, M.; Elsen, E.; Erdmann, W.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Felst, R.; Ferencei, J.; Fleischer, M.; Fleischmann, P.; Fleming, Y.H.; Flucke, G.; Flugge, G.; Fomenko, A.; Foresti, I.; Formanek, J.; Franke, G.; Frising, G.; Gabathuler, E.; Gabathuler, K.; Garutti, E.; Garvey, J.; Gayler, J.; Gerhards, R.; Gerlich, C.; Ghazaryan, Samvel; Ginzburgskaya, S.; Goerlich, L.; Gogitidze, N.; Gorbounov, S.; Grab, C.; Grassler, H.; Greenshaw, T.; Gregori, M.; Grindhammer, Guenter; Gwilliam, C.; Haidt, D.; Hajduk, L.; Haller, J.; Hansson, M.; Heinzelmann, G.; Henderson, R.C.W.; Henschel, H.; Henshaw, O.; Herrera, G.; Herynek, I.; Heuer, R.-D.; Hildebrandt, M.; Hiller, K.H.; Hoting, P.; Hoffmann, D.; Horisberger, R.; Hovhannisyan, A.; Ibbotson, M.; Ismail, M.; Jacquet, M.; Janauschek, L.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, D.P.; Jung, H.; Kant, D.; Kapichine, M.; Karlsson, M.; Katzy, J.; Keller, N.; Kenyon, I.R.; Kiesling, Christian M.; Klein, M.; Kleinwort, C.; Klimkovich, T.; Kluge, T.; Knies, G.; Knutsson, A.; Koblitz, B.; Korbel, V.; Kostka, P.; Koutouev, R.; Kropivnitskaya, A.; Kroseberg, J.; Kruger, K.; Kuckens, J.; Landon, M.P.J.; Lange, W.; Lastovicka, T.; Laycock, P.; Lebedev, A.; Leiner, B.; Lemrani, R.; Lendermann, V.; Levonian, S.; Lindfeld, L.; Lipka, K.; List, B.; Lobodzinska, E.; Loktionova, N.; Lopez-Fernandez, R.; Lubimov, V.; Lueders, H.; Luke, D.; Lux, T.; Lytkin, L.; Makankine, A.; Malden, N.; Malinovski, E.; Mangano, S.; Marage, P.; Marks, J.; Marshall, R.; Martisikova, M.; Martyn, H.-U.; Maxeld, S.J.; Meer, D.; Mehta, A.; Meier, K.; Meyer, A.B.; Meyer, H.; Meyer, J.; Mikocki, S.; Milcewicz-Mika, I.; Milstead, D.; Mohamed, A.; Moreau, F.; Morozov, A.; Morris, J.V.; Mozer, Matthias Ulrich; Muller, K.; Murin, P.; Nagovizin, V.; Nankov, K.; Naroska, B.; Naumann, J.; Naumann, Th.; Newman, Paul R.; Niebuhr, C.; Nikiforov, A.; Nikitin, D.; Nowak, G.; Nozicka, M.; Oganezov, R.; Olivier, B.; Olsson, J.E.; Ozerov, D.; Paramonov, A.; Pascaud, C.; Patel, G.D.; Peez, M.; Perez, E.; Perieanu, A.; Petrukhin, A.; Pitzl, D.; Placakyte, R.; Poschl, R.; Portheault, B.; Povh, B.; Raicevic, N.; Reimer, P.; Reisert, B.; Rimmer, A.; Risler, C.; Rizvi, E.; Robmann, P.; Roland, B.; Roosen, R.; Rostovtsev, A.; Rurikova, Z.; Rusakov, S.; Rybicki, K.; Sankey, D.P.C.; Sauvan, E.; Schatzel, S.; Scheins, J.; Schilling, F.-P.; Schleper, P.; Schmidt, S.; Schmitt, S.; Schneider, M.; Schoeffel, L.; Schoning, A.; Schroder, V.; Schultz-Coulon, H.-C.; Schwanenberger, C.; Sedlak, K.; Sefkow, F.; Sheviakov, I.; Shtarkov, L.N.; Sirois, Y.; Sloan, T.; Smirnov, P.; Soloviev, Y.; South, D.; Spaskov, V.; Specka, Arnd E.; Spitzer, H.; Stamen, R.; Stella, B.; Stiewe, J.; Strauch, I.; Straumann, U.; Tchoulakov, V.; Thompson, Graham; Thompson, P.D.; Tomasz, F.; Traynor, D.; Truoel, Peter; Tsipolitis, G.; Tsurin, I.; Turnau, J.; Tzamariudaki, E.; Uraev, A.; Urban, Marcel; Usik, A.; Utkin, D.; Valkar, S.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Van Remortel, N.; Vargas Trevino, A.; Vazdik, Y.; Veelken, C.; Vest, A.; Vinokurova, S.; Volchinski, V.; Wacker, K.; Wagner, J.; Weber, G.; Weber, R.; Wegener, D.; Werner, C.; Werner, N.; Wessels, M.; Wessling, B.; Winter, G.-G.; Wissing, Ch.; Woehrling, E.-E.; Wolf, R.; Wunsch, E.; Xella, S.; Yan, W.; Yeganov, V.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhelezov, A.; Zhokin, A.; Zohrabyan, H.; Zomer, F.

2005-01-01

A search for gravitinos produced in ep collisions is performed using the H1 detector at HERA. The data were taken at a centre-of-mass energy of 319 GeV and correspond to an integrated luminosity of 64.3 pb^{-1} for e^+p collisions and 13.5 pb^{-1} for e^-p collisions. If R-parity is not conserved, the t-channel exchange of a selectron can produce a neutralino, which, in models where the gravitino is the lightest supersymmetric particle, subsequently decays into a photon and a light gravitino. The resulting event signature, which involves an isolated photon, a jet and missing transverse energy, is analysed for the first time at HERA. No deviation from the Standard Model is found. Exclusion limits on the cross section and on R-parity-violating Yukawa couplings are derived in a Gauge Mediated Supersymmetry Breaking scenario. The results are independent of the squark sector. Neutralinos and supersymmetric partners of the left-handed electron with masses up to 112 GeV and 164 GeV, respectively, can be ruled out at...

Measurement of antideuteron photoproduction and a search for heavy stable charged particles at HERA

CERN Document Server

Aktas, A; Anthonis, T; Asmone, A; Babaev, A; Backovic, S; Bähr, J; Baranov, P; Barrelet, E; Bartel, Wulfrin; Baumgartner, S; Becker, J; Beckingham, M; Behnke, O; Behrendt, O; Belousov, A; Berger, Christoph; Berndt, T; Bizot, J C; Boenig, M O; Böhme, J; Boudry, V; Bracinik, J; Brisson, V; Broker, H B; Brown, D P; Bruncko, Dusan; Bunyatyan, A; Buschhorn, G; Büsser, F W; Bystritskaya, L; Campbell, A J; Caron, S; Cassol-Brunner, F; Cerny, K; Chekelian, V; Collard, Caroline; Contreras, J G; Coppens, Y R; Coughlan, J A; Cox, B E; Cozzika, G; Cvach, J; Dainton, J B; Dau, W D; Daum, K; de Roeck, A; De Wolf, E A; Delcourt, B; Demirchyan, R; Desch, Klaus; Diaconu, C; Dingfelder, J; Dodonov, V; Dubak, A; Duprel, C; Eckerlin, G; Efremenko, V; Egli, S; Eichler, R; Eisele, F; Ellerbrock, M; Elsen, E; Erdmann, M; Erdmann, W; Faulkner, P J W; Favart, L; Fedotov, A; Felst, R; Ferencei, J; Fleischer, M; Fleischmann, P; Fleming, Y H; Flucke, G; Flügge, G; Fomenko, A; Foresti, I; Formánek, J; Franke, G; Frising, G; Gabathuler, E; Gabathuler, K; Garutti, E; Garvey, J; Gayler, J; Gerhards, R; Gerlich, C; Ghazaryan, S; Görlich, L; Gogitidze, N; Gorbounov, S; Grab, C; Grassler, J; Greenshaw, T; Gregori, M; Grindhammer, G; Gwilliam, C; Haidt, D; Hajduk, L; Haller, J; Hansson, M; Heinzelmann, G; Henderson, R C W; Henschel, H; Henshaw, O; Heremans, R; Herrera-Corral, G; Herynek, I; Heuer, R D; Hildebrandt, M; Hiller, K H; Hoffmann, D; Horisberger, R P; Hoting, P; Hovhannisyan, A; Ibbotson, M; Ismail, M; Jacquet, M; Janauschek, L; Janssen, X; Jemanov, V; Johnson, D P; Jönsson, L B; Jung, H; Kant, D; Kapichine, M; Karlsson, M; Katzy, J; Keller, N; Kennedy, J; Kenyon, I R; Kiesling, C; Klein, M; Kleinwort, C; Klimkovich, T; Kluge, T; Knies, G; Knutsson, A; Koblitz, B; Korbel, V; Kostka, P; Koutouev, R; Kropivnitskaya, A; Kroseberg, J; Kuckens, J; Kuhr, T; Landon, M P J; Lange, W; Lastoviicka, T; Laycock, P; Lebedev, A; Leissner, B; Lemrani, R; Lendermann, V; Levonian, S; Lindfeld, L; Lipka, K; List, B; Lobodzinska, E; Loktionova, N; López-Fernandez, R; Lubimov, V; Lüders, H; Lüke, D; Lux, T; Lytkin, L; Makankine, A; Malden, N; Malinovski, E; Mangano, S; Marage, P; Marks, J; Marshall, R; Martisikova, M; Martyn, H U; Maxfield, S J; Meer, D; Mehta, A; Meier, K; Meyer, A B; Meyer, H; Meyer, J; Michine, S; Mikocki, S; Milcewicz, I; Milstead, D; Mohamed, A; Moreau, F; Morozov, A; Morozov, I; Morris, J V; Mozer, M U; Müller, K; Murín, P; Nagovizin, V; Naroska, Beate; Naumann, J; Naumann, Th; Newman, P R; Niebuhr, C; Nikiforov, A; Nikitin, D; Nowak, G; Nozicka, M; Oganezov, R; Olivier, B; Olsson, J E; Ossoskov, G; Ozerov, D; Pascaud, C; Patel, G D; Peez, M; Pérez, E; Perieanu, A; Petrukhin, A; Pitzl, D; Placakyte, R; Portheault, B; Pöschl, R; Povh, B; Raicevic, N; Ratiani, Z; Reimer, P; Reisert, B; Rimmer, A; Risler, C; Rizvi, E; Robmann, P; Roland, B; Roosen, R; Rostovtsev, A; Rurikova, Z; Rusakov, S; Rybicki, K; Sankey, D P C; Sauvan, E; Schatzel, S; Scheins, J; Schilling, F P; Schleper, P; Schmidt, S; Schmitt, S; Schneider, M; Schoeffel, L; Schöning, A; Schröder, V; Schultz Coulon, H C; Schwanenberger, C; Sedlak, K; Sefkow, F; Shevyakov, I; Shtarkov, L N; Sirois, Y; Sloan, T; Smirnov, P; Soloviev, Yu V; South, D; Spaskov, V; Specka, A; Spitzer, H; Stamen, R; Stella, B; Stiewe, J; Strauch, I; Straumann, U; Tchoulakov, V; Thompson, G; Thompson, P D; Tomasz, F; Traynor, D; Trevino, A V; Truöl, P; Tsipolitis, G; Tsuri, I; Turnau, J; Tzamariudaki, E; Uraev, A; Urban, M; Usik, A; Utkin, D; Valkár, S; Valkárová, A; Vallée, C; Van Mechelen, P; Van Remortel, N; Vazdik, Ya A; Veelken, C; Vest, A; Vinokurova, S; Volchinski, V; Wacker, K; Wagner, J; Weber, G; Weber, R; Wegener, D; Werner, C; Werner, N; Wessels, M; Wessling, B; Winter, G G; Wissing, C; Woerling, E E; Wolf, R; Wünsch, E; Xella, S M; Yan, W; Yeganov, V; Zácek, J; Zaleisak, J; Zhang, Z; Zhokin, A; Zohrabyan, H; Zomer, F; 10.1140/epjc/s2004-01978-x

2004-01-01

The cross section for antideuteron photoproduction is measured at HERA at a mean centre-of-mass energy of W/sub gamma p/=200 GeV in the range 0.2

HERA laboratory frame, respectively. The numbers of antideuterons per event are found to be similar in photoproduction to those in central proton-proton collisions at the CERN ISR but much lower than those in central Au-Au collisions at RHIC. The coalescence parameter B/sub 2/, which characterizes the likelihood of antideuteron production, is measured in photoproduction to be 0.010+or-0.002+or-0.001, which is much higher than in Au-Au collisions at a similar nucleon-nucleon centre-of-mass energy. No significant production of particles heavier than deuterons is observed and upper limits are set on the photoproduction cross sections for such particles.

hSSB1 associates with and promotes stability of the BLM helicase

OpenAIRE

O'BYRNE, KEN

2017-01-01

Background Maintenance of genome stability is critical in human cells. Mutations in or loss of genome stability pathways can lead to a number of pathologies including cancer. hSSB1 is a critical DNA repair protein functioning in the repair and signalling of stalled DNA replication forks, double strand DNA breaks and oxidised DNA lesions. The BLM helicase is central to the repair of both collapsed DNA replication forks and double strand DNA breaks by homologous recombination. Results In this s...

Leading neutron energy and p{sub T} distributions in deep inelastic scattering and photoproduction at HERA

Energy Technology Data Exchange (ETDEWEB)

Chekanov, S.; Derrick, M.; Magill, S. [Argonne National Laboratory, Argonne, IL (US)] (and others)

2007-02-15

The production of energetic neutrons in ep collisions has been studied with the ZEUS detector at HERA. The neutron energy and p{sub T}{sup 2} distributions were measured with a forward neutron calorimeter and tracker in a 40 pb{sup -1} sample of inclusive deep inelastic scattering (DIS) data and a 6 pb{sup -1} sample of photoproduction data. The neutron yield in photoproduction is suppressed relative to DIS for the lower neutron energies and the neutrons have a steeper p{sub T}{sup 2} distribution, consistent with the expectation from absorption models. The distributions are compared to HERA measurements of leading protons. The neutron energy and transverse-momentum distributions in DIS are compared to Monte Carlo simulations and to the predictions of particle exchange models. Models of pion exchange incorporating absorption and additional secondary meson exchanges give a good description of the data. (orig.)

Photoproduction of isolated photons, inclusively and with a jet, at HERA

International Nuclear Information System (INIS)

Abramowicz, H.; Abt, I.; Adamczyk, L.

2013-12-01

The photoproduction of isolated photons, both inclusive and together with a jet, has been measured with the ZEUS detector at HERA using an integrated luminosity of 374 pb -1 . Differential cross sections are presented in the isolated-photon transverse-energy and pseudorapidity ranges 6 T γ γ T jet jet 2 2 . Differential cross sections are also presented for inclusive isolated photon production as functions of the transverse energy and pseudorapidity of the photon. Higher-order theoretical calculations are compared to the results.

The Arabidopsis thaliana Homolog of the Helicase RTEL1 Plays Multiple Roles in Preserving Genome Stability[C][W

Science.gov (United States)

Recker, Julia; Knoll, Alexander; Puchta, Holger

2014-01-01

In humans, mutations in the DNA helicase Regulator of Telomere Elongation Helicase1 (RTEL1) lead to Hoyeraal-Hreidarsson syndrome, a severe, multisystem disorder. Here, we demonstrate that the RTEL1 homolog in Arabidopsis thaliana plays multiple roles in preserving genome stability. RTEL1 suppresses homologous recombination in a pathway parallel to that of the DNA translocase FANCM. Cytological analyses of root meristems indicate that RTEL1 is involved in processing DNA replication intermediates independently from FANCM and the nuclease MUS81. Moreover, RTEL1 is involved in interstrand and intrastrand DNA cross-link repair independently from FANCM and (in intrastrand cross-link repair) parallel to MUS81. RTEL1 contributes to telomere homeostasis; the concurrent loss of RTEL1 and the telomerase TERT leads to rapid, severe telomere shortening, which occurs much more rapidly than it does in the single-mutant line tert, resulting in developmental arrest after four generations. The double mutant rtel1-1 recq4A-4 exhibits massive growth defects, indicating that this RecQ family helicase, which is also involved in the suppression of homologous recombination and the repair of DNA lesions, can partially replace RTEL1 in the processing of DNA intermediates. The requirement for RTEL1 in multiple pathways to preserve genome stability in plants can be explained by its putative role in the destabilization of DNA loop structures, such as D-loops and T-loops. PMID:25516598

The human RecQ helicases BLM and RECQL4 cooperate to preserve genome stability

Czech Academy of Sciences Publication Activity Database

Singh, D.K.; Popuri, V.; Kulikowicz, T.; Shevelev, Igor; Ghosh, A.K.; Ramamoorthy, M.; Rossi, M.L.; Janščák, Pavel; Croteau, D.L.; Bohr, V.A.

2012-01-01

Roč. 40, č. 14 (2012), s. 6632-6648 ISSN 0305-1048 R&D Projects: GA ČR GAP305/10/0281 Grant - others:NIH(US) Z01-AG000726-17 Institutional research plan: CEZ:AV0Z50520514 Institutional support: RVO:68378050 Keywords : RecQ helicase * genome stability * BLM * RECQL4 Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 8.278, year: 2012

Determination of the integrated luminosity at HERA using elastic QED Compton events

International Nuclear Information System (INIS)

Aaron, F.D.; Andreev, V.

2012-04-01

A measurement of the integrated luminosity at the ep collider HERA is presented, exploiting the elastic QED Compton process ep→eγp. The electron and the photon are detected in the backward calorimeter of the H1 experiment. The integrated luminosity of the data recorded in 2003 to 2007 is determined with a precision of 2.3%. The measurement is found to be compatible with the corresponding result obtained using the Bethe-Heitler process.

Determination of the Integrated Luminosity at HERA using Elastic QED Compton Events

CERN Document Server

Aaron, F.D.; Andreev, V.; Backovic, S.; Baghdasaryan, A.; Baghdasaryan, S.; Barrelet, E.; Bartel, W.; Begzsuren, K.; Belousov, A.; Belov, P.; Bizot, J.C.; Boudry, V.; Bozovic-Jelisavcic, I.; Bracinik, J.; Brandt, G.; Brinkmann, M.; Brisson, V.; Britzger, D.; Bruncko, D.; Bunyatyan, A.; Bylinkin, A.; Bystritskaya, L.; Campbell, A.J.; Cantun Avila, K.B.; Ceccopieri, F.; Cerny, K.; Cerny, V.; Chekelian, V.; Contreras, J.G.; Coughlan, J.A.; Cvach, J.; Dainton, J.B.; Daum, K.; Delcourt, B.; Delvax, J.; De Wolf, E.A.; Diaconu, C.; Dobre, M.; Dodonov, V.; Dossanov, A.; Dubak, A.; Eckerlin, G.; Egli, S.; Eliseev, A.; Elsen, E.; Favart, L.; Fedotov, A.; Felst, R.; Feltesse, J.; Ferencei, J.; Fischer, D.J.; Fleischer, M.; Fomenko, A.; Gabathuler, E.; Gayler, J.; Ghazaryan, S.; Glazov, A.; Goerlich, L.; Gogitidze, N.; Gouzevitch, M.; Grab, C.; Grebenyuk, A.; Greenshaw, T.; Grindhammer, G.; Habib, S.; Haidt, D.; Henderson, R.C.W.; Hennekemper, E.; Henschel, H.; Herbst, M.; Herrera, G.; Hildebrandt, M.; Hiller, K.H.; Hoffmann, D.; Horisberger, R.; Hreus, T.; Huber, F.; Jacquet, M.; Janssen, X.; Jonsson, L.; Jung, H.; Kapichine, M.; Kenyon, I.R.; Kiesling, C.; Klein, M.; Kleinwort, C.; Kluge, T.; Kogler, R.; Kostka, P.; Kramer, M.; Kretzschmar, J.; Kruger, K.; Landon, M.P.J.; Lange, W.; Lastovicka-Medin, G.; Laycock, P.; Lebedev, A.; Lendermann, V.; Levonian, S.; Lipka, K.; List, B.; List, J.; Lobodzinski, B.; Lopez-Fernandez, R.; Lubimov, V.; Malinovski, E.; Martyn, H.U.; Maxfield, S.J.; Mehta, A.; Meyer, A.B.; Meyer, H.; Meyer, J.; Mikocki, S.; Milcewicz-Mika, I.; Moreau, F.; Morozov, A.; Morris, J.V.; Muller, K.; Naumann, Th.; Newman, P.R.; Niebuhr, C.; Nikitin, D.; Nowak, G.; Nowak, K.; Olsson, J.E.; Ozerov, D.; Pahl, P.; Palichik, V.; Panagoulias, I.; Pandurovic, M.; Papadopoulou, Th.; Pascaud, C.; Patel, G.D.; Perez, E.; Petrukhin, A.; Picuric, I.; Pirumov, H.; Pitzl, D.; Placakyte, R.; Pokorny, B.; Polifka, R.; Povh, B.; Radescu, V.; Raicevic, N.; Ravdandorj, T.; Reimer, P.; Rizvi, E.; Robmann, P.; Roosen, R.; Rostovtsev, A.; Rotaru, M.; Ruiz Tabasco, J.E.; Rusakov, S.; Salek, D.; Sankey, D.P.C.; Sauter, M.; Sauvan, E.; Schmitt, S.; Schoeffel, L.; Schoning, A.; Schultz-Coulon, H.C.; Sefkow, F.; Shtarkov, L.N.; Shushkevich, S.; Sloan, T.; Soloviev, Y.; Sopicki, P.; South, D.; Spaskov, V.; Specka, A.; Staykova, Z.; Steder, M.; Stella, B.; Stoicea, G.; Straumann, U.; Sykora, T.; Thompson, P.D.; Tran, T.H.; Traynor, D.; Truol, P.; Tsakov, I.; Tseepeldorj, B.; Turnau, J.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Vazdik, Y.; Wegener, D.; Wunsch, E.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhokin, A.; Zlebcik, R.; Zohrabyan, H.; Zomer, F.

2012-10-10

A measurement of the integrated luminosity at the ep collider HERA is presented, exploiting the elastic QED Compton process ep \\rightarrow ep. The electron and the photon are detected in the backward calorimeter of the H1 experiment. The integrated luminosity of the data recorded in 2003 to 2007 is determined with a precision of 2.3%. The measurement is found to be compatible with the corresponding result obtained using the Bethe-Heitler process.

Multi-lepton production at high transverse momentum at HERA

Energy Technology Data Exchange (ETDEWEB)

Chekanov, S.; Derrick, M.; Magill, S. [Argonne National Lab., Argonne, IL (US)] (and others)

2009-06-15

A search for events containing two or more high-transverse-momentum isolated leptons has been performed in ep collisions with the ZEUS detector at HERA using the full collected data sample, corresponding to an integrated luminosity of 480 pb{sup -1}. The number of observed events has been compared with the prediction from the Standard Model, searching for possible deviations, especially for multi- lepton events with invariant mass larger than 100 GeV. Good agreement with the Standard Model has been observed. Total and differential cross sections for di-lepton production have been measured in a restricted phase space dominated by photon-photon collisions. (orig.)

Exclusive diffractive processes at HERA within the dipole picture

International Nuclear Information System (INIS)

Kowalski, H.; Motkyka, L.; Uniwersytet Jagiellonski, Krakow; Watt, G.; Univ. College London

2006-08-01

We present a simultaneous analysis, within an impact parameter dependent saturated dipole model, of exclusive diffractive vector meson (J/ψ, φ and ρ) production, deeply virtual Compton scattering and the total γ * p cross section data measured at HERA. Various cross sections measured as a function of the kinematic variables Q 2 , W and t are well described, with little sensitivity to the details of the vector meson wave functions. We determine the properties of the gluon density in the proton in both longitudinal and transverse dimensions, including the impact parameter dependent saturation scale. The overall success of the description indicates universality of the emerging gluon distribution and proton shape. (orig.)

Multi-lepton production at high transverse momentum at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2009-06-01

A search for events containing two or more high-transverse-momentum isolated leptons has been performed in ep collisions with the ZEUS detector at HERA using the full collected data sample, corresponding to an integrated luminosity of 480 pb -1 . The number of observed events has been compared with the prediction from the Standard Model, searching for possible deviations, especially for multi- lepton events with invariant mass larger than 100 GeV. Good agreement with the Standard Model has been observed. Total and differential cross sections for di-lepton production have been measured in a restricted phase space dominated by photon-photon collisions. (orig.)

Inclusive charged particle cross sections in photoproduction at HERA

International Nuclear Information System (INIS)

Abt, I.

1994-03-01

Cross sections are presented for the inclusive production of charged particles measured in electron-proton collisions at low Q 2 with the H1 detector at HERA. The transverse momentum distribution extends up to 8 GeV/c. Its shape is found to be harder than that observed in anti pp collisions at comparable centre-of-mass energies √s γp ∼√s anti pp∼200 GeV, and also harder than in γp collisions at lower energies √s γp ∼18 GeV. Results from quantum chromodynamics (QCD) calculations agree with the measured transverse momentum and pseudorapidity cross sections. (orig.)

Search for Excited Quarks in ep Collisions at HERA

CERN Document Server

Aaron, F D; Alimujiang, K; Andreev, V; Antunovic, B; Asmone, A; Backovic, S; Baghdasaryan, A; Barrelet, E; Bartel, W; Begzsuren, K; Belousov, A; Bizot, J C; Boudry, V; Bozovic-Jelisavcic, I; Bracinik, J; Brandt, G; Brinkmann, M; Brisson, V; Bruncko, D; Bunyatyan, A; Buschhorn, G; Bystritskaya, L; Campbell, A J; Cantun Avila, K B; Cassol-Brunner, F; Cerny, K; Cerny, V; Chekelian, V; Cholewa, A; Contreras, J G; Coughlan, J A; Cozzika, G; Cvach, J; Dainton, J B; Daum, K; Deak, M; de Boer, Y; Delcourt, B; Del Degan, M; Delvax, J; De Roeck, A; De Wolf, E A; Diaconu, C; Dodonov, V; Dossanov, A; Dubak, A; Eckerlin, G; Efremenko, V; Egli, S; Eliseev, A; Elsen, E; Falkiewicz, A; Faulkner, P J W; Favart, L; Fedotov, A; Felst, R; Feltesse, J; Ferencei, J; Fischer, D J; Fleischer, M; Fomenko, A; Gabathuler, E; Gayler, J; Ghazaryan, S; Glazov, A; Glushkov, I; Goerlich, L; Gogitidze, N; Gouzevitch, M; Grab, C; Greenshaw, T; Grell, B R; Grindhammer, G; Habib, S; Haidt, D; Helebrant, C; Henderson, R C W; Hennekemper, E; Henschel, H; Herbst, M; Herrera, G; Hildebrandt, M; Hiller, K H; Hoffmann, D; Horisberger, R; Hreus, T; Jacquet, M; Janssen, M E; Janssen, X; Jemanov, V; Jonsson, L; Jung, Andreas Werner; Jung, H; Kapichine, M; Katzy, J; Kenyon, I R; Kiesling, C; Klein, M; Kleinwort, C; Kluge, T; Knutsson, A; Kogler, R; Korbel, V; Kostka, P; Kraemer, M; Krastev, K; Kretzschmar, J; Kropivnitskaya, A; Kruger, K; Kutak, K; Landon, M P J; Lange, W; Lastovicka-Medin, G; Laycock, P; Lebedev, A; Leibenguth, G; Lendermann, V; Levonian, S; Li, G; Lipka, K; Liptaj, A; List, B; List, J; Loktionova, N; Lopez-Fernandez, R; Lubimov, V; Lytkin, L; Makankine, A; Malinovski, E; Marage, P; Marti, Ll; Martyn, H U; Maxfield, S J; Mehta, A; Meyer, A B; Meyer, H; Meyer, H; Meyer, J; Michels, V; Mikocki, S; Milcewicz-Mika, I; Moreau, F; Morozov, A; Morris, J V; Mozer, Matthias Ulrich; Mudrinic, M; Muller, K; Murin, P; Naroska, B; Naumann, Th; Newman, P R; Niebuhr, C; Nikiforov, A; Nowak, G; Nowak, K; Nozicka, M; Olivier, B; Olsson, J E; Osman, S; Ozerov, D; Palichik, V; Panagoulias, I; Pandurovic, M; Papadopoulou, Th; Pascaud, C; Patel, G D; Pejchal, O; Perez, E; Petrukhin, A; Picuric, I; Piec, S; Pitzl, D; Placakyte, R; Pokorny, B; Polifka, R; Povh, B; Preda, T; Radescu, V; Rahmat, A J; Raicevic, N; Raspiareza, A; Ravdandorj, T; Reimer, P; Rizvi, E; Robmann, P; Roland, B; Roosen, R; Rostovtsev, A; Rotaru, M; Ruiz Tabasco, J E; Rurikova, Z; Rusakov, S; Salek, D; Sankey, D P C; Sauter, M; Sauvan, E; Schmitt, S; Schmitz, C; Schoeffel, L; Schoning, A; Schultz-Coulon, H C; Sefkow, F; Shaw-West, R N; Sheviakov, I; Shtarkov, L N; Shushkevich, S; Sloan, T; Smiljanic, Ivan; Soloviev, Y; Sopicki, P; South, D; Spaskov, V; Specka, Arnd E; Staykova, Z; Steder, M; Stella, B; Stoicea, G; Straumann, U; Sunar, D; Sykora, T; Tchoulakov, V; Thompson, G; Thompson, P D; Toll, T; Tomasz, F; Tran, T H; Traynor, D; Trinh, T N; Truol, P; Tsakov, I; Tseepeldorj, B; Turnau, J; Urban, K; Valkarova, A; Vallee, C; Van Mechelen, P; Vargas Trevino, A; Vazdik, Y; Vinokurova, S; Volchinski, V; von den Driesch, M; Wegener, D; Wissing, Ch; Wunsch, E; Zacek, J; Zalesak, J; Zhang, Z; Zhokin, A; Zimmermann, T; Zohrabyan, H; Zomer, F; Zus, R

2009-01-01

A search for excited quarks is performed using the full ep data sample collected by the H1 experiment at HERA, corresponding to a total integrated luminosity of 475 pb^-1. The electroweak decays of excited quarks q* -> q gamma, q* -> q Z and q* -> q W with subsequent hadronic or leptonic decays of the W and Z bosons are considered. No evidence for first generation excited quark production is found. Mass dependent exclusion limits on q* production cross sections and on the ratio f/Lambda of the coupling to the compositeness scale are derived within gauge mediated models. These limits extend the excluded region compared to previous excited quark searches.

Medical and Safety Reforms in Boxing

Science.gov (United States)

Jordan, Barry D.

1988-01-01

The continued existence of boxing as an accepted sport in civilized society has been long debated. The position of the American Medical Association (AMA) has evolved from promoting increased safety and medical reform to recommending total abolition of both amateur and professional boxing. In response to the AMA opposition to boxing, the boxing community has attempted to increase the safeguards in amateur and professional boxing. The United States of America Amateur Boxing Federation, which is the national regulatory agency for all amateur boxing in the United States, has taken several actions to prevent the occurrence of acute brain injury and is currently conducting epidemiologic studies to assess the long-term neuropsychologic consequences of amateur boxing. In professional boxing, state regulatory agencies such as the New York State Athletic Commission have introduced several medical interventions to prevent and reduce neurologic injury. The lack of a national regulatory agency to govern professional boxing has stimulated the formation of the Association of Boxing Commissions and potential legislation for the federal regulation of professional boxing by a federally chartered organization called the United States Boxing Commission. The AMA's opposition to boxing and the medical and safety reforms implemented by the proponents of boxing are discussed. PMID:3385788

Glove box

International Nuclear Information System (INIS)

Morita, Atsushi

1990-01-01

Wire rope earthquake proof supports having sufficient vibration transmitting and attenuating property are disposed between a fixed floor and the bottom of a glove box in order to improve earthquake proofness of the glove box. The vertical weight of the glove box is supported by support legs slidable on the surface of the fixed floor. The wire rope earthquake-proof supports when undergoing a load, cause stretching and rolling against the external force such as earthquakes, and provide flexible spring support and cause a great damping due to friction with strands. Further, the vertical weight is always supported by the support legs and, when a horizontal weight is applied, the glove box slides on the fixed floor freely with slidable members. In this way, stress concentration generated at joint portions of columns and beams can be moderated greatly and earthquake proofness can be improved. Further, quality control and maintenance for the device is almost unnecessary owing to excellent fatigue-resistant characteristics of the wire rope earthquake proof supports. (N.H.)

Bento Boxes

Science.gov (United States)

Hasio, Cindy

2010-01-01

Bento boxes are common objects in Japanese culture, designed to hold enough lunch for one person. They have individual compartments and sometimes multiple tiers for rice, vegetables, and other side dishes. They are made of materials ranging from wood, cloth, aluminum, or plastic. In general, the greater the number of foods, the better the box is…

Multi-Leptons with High Transverse Momentum at HERA

CERN Document Server

Aaron, F.D.; Abt, I.; Adamczyk, L.; Adamus, M.; Aldaya Martin, M.; Alexa, C.; Alimujiang, K.; Andreev, V.; Antonelli, S.; Antonioli, P.; Antonov, A.; Antunovic, B.; Arneodo, M.; Asmone, A.; Aushev, V.; Bachynska, O.; Backovic, S.; Baghdasaryan, A.; Bamberger, A.; Barakbaev, A.N.; Barbagli, G.; Bari, G.; Barreiro, F.; Barrelet, E.; Bartel, W.; Bartsch, D.; Basile, M.; Begzsuren, K.; Behnke, O.; Behr, J.; Behrens, U.; Bellagamba, L.; Belousov, A.; Bertolin, A.; Bhadra, S.; Bindi, M.; Bizot, J.C.; Blohm, C.; Bold, T.; Boos, E.G.; Borodin, M.; Borras, K.; Boscherini, D.; Bot, D.; Boudry, V.; Boutle, S.K.; Bozovic-Jelisavcic, I.; Bracinik, J.; Brandt, G.; Brinkmann, M.; Brisson, V.; Brock, I.; Brownson, E.; Brugnera, R.; Brummer, N.; Bruncko, D.; Bruni, A.; Bruni, G.; Brzozowska, B.; Bunyatyan, A.; Buschhorn, G.; Bussey, P.J.; Butterworth, J.M.; Bylsma, B.; Bystritskaya, L.; Caldwell, A.; Campbell, A.J.; Cantun Avila, K.B.; Capua, M.; Carlin, R.; Cassol-Brunner, F.; Catterall, C.D.; Cerny, K.; Cerny, V.; Chekanov, S.; Chekelian, V.; Cholewa, A.; Chwastowski, J.; Ciborowski, J.; Ciesielski, R.; Cifarelli, L.; Cindolo, F.; Contin, A.; Contreras, J.G.; Cooper-Sarkar, A.M.; Coppola, N.; Corradi, M.; Corriveau, F.; Costa, M.; Coughlan, J.A.; Cozzika, G.; Cvach, J.; D'Agostini, G.; Dainton, J.B.; Dal Corso, F.; Daum, K.; Deak, M.; de Boer, Y.; de Favereau, J.; Delcourt, B.; Del Degan, M.; del Peso, J.; Delvax, J.; Dementiev, R.K.; De Pasquale, S.; Derrick, M.; Devenish, R.C.E.; De Wolf, E.A.; Diaconu, C.; Dobur, D.; Dodonov, V.; Dolgoshein, B.A.; Dossanov, A.; Doyle, A.T.; Drugakov, V.; Dubak, A.; Durkin, L.S.; Dusini, S.; Eckerlin, G.; Efremenko, V.; Egli, S.; Eisenberg, Y.; Eliseev, A.; Elsen, E.; Ermolov, P.F.; Eskreys, A.; Falkiewicz, A.; Fang, S.; Favart, L.; Fazio, S.; Fedotov, A.; Felst, R.; Feltesse, J.; Ferencei, J.; Ferrando, J.; Ferrero, M.I.; Figiel, J.; Fischer, D.J.; Fleischer, M.; Fomenko, A.; Forrest, M.; Foster, B.; Fourletov, S.; Gabathuler, E.; Galas, A.; Gallo, E.; Garfagnini, A.; Gayler, J.; Geiser, A.; Ghazaryan, S.; Gialas, I.; Gladilin, L.K.; Gladkov, D.; Glasman, C.; Glazov, A.; Glushkov, I.; Goerlich, L.; Gogitidze, N.; Golubkov, Yu.A.; Gottlicher, P.; Gouzevitch, M.; Grab, C.; Grabowska-Bold, I.; Grebenyuk, J.; Greenshaw, T.; Gregor, I.; Grell, B.R.; Grigorescu, G.; Grindhammer, G.; Grzelak, G.; Gwenlan, C.; Haas, T.; Habib, S.; Haidt, D.; Hain, W.; Hamatsu, R.; Hart, J.C.; Hartmann, H.; Hartner, G.; Helebrant, C.; Henderson, R.C.W.; Hennekemper, E.; Henschel, H.; Herbst, M.; Herrera, G.; Hildebrandt, M.; Hilger, E.; Hiller, K.H.; Hochman, D.; Hoffmann, D.; Holm, U.; Hori, R.; Horisberger, R.; Horton, K.; Hreus, T.; Huttmann, A.; Iacobucci, G.; Ibrahim, Z.A.; Iga, Y.; Ingbir, R.; Ishitsuka, M.; Jacquet, M.; Jakob, H.P.; Janssen, M.E.; Janssen, X.; Januschek, F.; Jimenez, M.; Jones, T.W.; Jonsson, L.; Jung, A.W.; Jung, H.; Jungst, M.; Kadenko, I.; Kahle, B.; Kamaluddin, B.; Kananov, S.; Kanno, T.; Kapichine, M.; Karshon, U.; Karstens, F.; Katkov, I.I.; Katzy, J.; Kaur, M.; Kaur, P.; Kenyon, I.R.; Keramidas, A.; Khein, L.A.; Kiesling, C.; Kim, J.Y.; Kisielewska, D.; Kitamura, S.; Klanner, R.; Klein, M.; Klein, U.; Kleinwort, C.; Kluge, T.; Knutsson, A.; Koffeman, E.; Kogler, R.; Kollar, D.; Kooijman, P.; Korzhavina, I.A.; Kostka, P.; Kotanski, A.; Kotz, U.; Kowalski, H.; Kraemer, M.; Krastev, K.; Kretzschmar, J.; Kropivnitskaya, A.; Kruger, K.; Kulinski, P.; Kuprash, O.; Kutak, K.; Kuze, M.; Kuzmin, V.A.; Landon, M.P.J.; Lange, W.; Lastovicka-Medin, G.; Laycock, P.; Lebedev, A.; Lee, A.; Leibenguth, G.; Lendermann, V.; Levchenko, B.B.; Levonian, S.; Levy, A.; Li, G.; Libov, V.; Limentani, S.; Ling, T.Y.; Lipka, K.; Liptaj, A.; Lisovyi, M.; List, B.; List, J.; Lobodzinska, E.; Lohmann, W.; Lohr, B.; Lohrmann, E.; Loizides, J.H.; Loktionova, N.; Long, K.R.; Longhin, A.; Lontkovskyi, D.; Lopez-Fernandez, R.; Lubimov, V.; Lukasik, J.; Lukina, O.Yu.; Luzniak, P.; Lytkin, L.; Maeda, J.; Magill, S.; Makankine, A.; Makarenko, I.; Malinovski, E.; Malka, J.; Mankel, R.; Marage, P.; Margotti, A.; Marini, G.; Marti, Ll.; Martin, J.F.; Martyn, H.U.; Mastroberardino, A.; Matsumoto, T.; Mattingly, M.C.K.; Maxfield, S.J.; Mehta, A.; Melzer-Pellmann, I.A.; Meyer, A.B.; Meyer, H.; Meyer, H.; Meyer, J.; Michels, V.; Miglioranzi, S.; Mikocki, S.; Milcewicz-Mika, I.; Mohamad Idris, F.; Monaco, V.; Montanari, A.; Moreau, F.; Morozov, A.; Morris, J.D.; Morris, J.V.; Mozer, M.U.; Mudrinic, M.; Muller, K.; Murin, P.; Musgrave, B.; Nagano, K.; Namsoo, T.; Nania, R.; Naumann, Th.; Newman, P.R.; Nicholass, D.; Niebuhr, C.; Nigro, A.; Nikiforov, A.; Ning, Y.; Noor, U.; Notz, D.; Nowak, G.; Nowak, K.; Nowak, R.J.; Nozicka, M.; Nuncio-Quiroz, A.E.; Oh, B.Y.; Okazaki, N.; Oliver, K.; Olivier, B.; Olkiewicz, K.; Olsson, J.E.; Osman, S.; Ota, O.; Ozerov, D.; Palichik, V.; Panagoulias, I.; Pandurovic, M.; Papadopoulou, Th.; Papageorgiu, K.; Parenti, A.; Pascaud, C.; Patel, G.D.; Paul, E.; Pawlak, J.M.; Pawlik, B.; Pejchal, O.; Pelfer, P.G.; Pellegrino, A.; Perez, E.; Perlanski, W.; Perrey, H.; Petrukhin, A.; Picuric, I.; Piec, S.; Piotrzkowski, K.; Pitzl, D.; Placakythe, R.; Plucinski, P.; Pokorny, B.; Pokrovskiy, N.S.; Polifka, R.; Polini, A.; Povh, B.; Preda, T.; Proskuryakov, A.S.; Przybycien, M.; Radescu, V.; Rahmat, A.J.; Raicevic, N.; Raspiareza, A.; Raval, A.; Ravdandorj, T.; Reeder, D.D.; Reimer, P.; Reisert, B.; Ren, Z.; Repond, J.; Ri, Y.D.; Rizvi, E.; Robertson, A.; Robmann, P.; Roland, B.; Roloff, P.; Ron, E.; Roosen, R.; Rostovtsev, A.; Rotaru, M.; Rubinsky, I.; Ruiz Tabasco, J.E.; Rurikova, Z.; Rusakov, S.; Ruspa, M.; Sacchi, R.; Salek, D.; Samson, U.; Sankey, D.P.C.; Sartorelli, G.; Sauter, M.; Sauvan, E.; Savin, A.A.; Saxon, D.H.; Schioppa, M.; Schlenstedt, S.; Schleper, P.; Schmidke, W.B.; Schmitt, S.; Schneekloth, U.; Schoeffel, L.; Schonberg, V.; Schoning, A.; Schorner-Sadenius, T.; Schultz-Coulon, H.C.; Schwartz, J.; Sciulli, F.; Sefkow, F.; Shaw-West, R.N.; Shcheglova, L.M.; Shehzadi, R.; Shimizu, S.; Shtarkov, L.N.; Shushkevich, S.; Singh, I.; Skillicorn, I.O.; Sloan, T.; Slominski, W.; Smiljanic, I.; Smith, W.H.; Sola, V.; Solano, A.; Soloviev, Y.; Son, D.; Sopicki, P.; Sorokin, Iu.; Sosnovtsev, V.; South, D.; Spaskov, V.; Specka, A.; Spiridonov, A.; Stadie, H.; Stanco, L.; Staykova, Z.; Steder, M.; Stella, B.; Stern, A.; Stewart, T.P.; Stifutkin, A.; Stoicea, G.; Stopa, P.; Straumann, U.; Suchkov, S.; Sunar, D.; Susinno, G.; Suszycki, L.; Sykora, T.; Sztuk, J.; Szuba, D.; Szuba, J.; Tapper, A.D.; Tassi, E.; Tchoulakov, V.; Terron, J.; Theedt, T.; Thompson, G.; Thompson, P.D.; Tiecke, H.; Tokushuku, K.; Toll, T.; Tomasz, F.; Tomaszewska, J.; Tran, T.H.; Traynor, D.; Trinh, T.N.; Truol, P.; Tsakov, I.; Tseepeldorj, B.; Tsurugai, T.; Turcato, M.; Turnau, J.; Tymieniecka, T.; Urban, K.; Uribe-Estrada, C.; Valkarovha, A.; Vallee, C.; Van Mechelen, P.; Vargas Trevino, A.; Vazdik, Y.; Vazquez, M.; Verbytskyi, A.; Vinokurova, S.; Vlasov, N.N.; Volchinski, V.; Volynets, O.; von den Driesch, M.; Walczak, R.; Wan Abdullah, W.A.T.; Wegener, D.; Whitmore, J.J.; Whyte, J.; Wiggers, L.; Wing, M.; Wissing, Ch.; Wlasenko, M.; Wolf, G.; Wolfe, H.; Wrona, K.; Wunsch, E.; Yagues-Molina, A.G.; Yamada, S.; Yamazaki, Y.; Yoshida, R.; Youngman, C.; Zacek, J.; Zalesak, J.; Zarnecki, A.F.; Zawiejski, L.; Zeuner, W.; Zhang, Z.; Zhautykov, B.O.; Zhokin, A.; Zhou, C.; Zichichi, A.; Zimmermann, T.; Zohrabyan, H.; Zolko, M.; Zomer, F.; Zotkin, D.S.; Zus, R.

2009-01-01

Events with at least two high transverse momentum leptons (electrons or muons) are studied using the H1 and ZEUS detectors at HERA with an integrated luminosity of 0.94 fb^{-1}. The observed numbers of events are in general agreement with the Standard Model predictions. Seven di- and tri-lepton events are observed in e^+p collision data with a scalar sum of the lepton transverse momenta above 100 GeV while 1.94+-0.17 events are expected. Such events are not observed in e^-p collisions for which 1.19+-0.12 are predicted. Total visible and differential di-electron and di-muon photoproduction cross sections are extracted in a restricted phase space dominated by photon-photon collisions.

Results from the H1 experiment at HERA

International Nuclear Information System (INIS)

Roeck, A. de

1994-01-01

New results from the H1 experiment at HERA on photoproduction, deep inelastic scattering and search for exotic particles are presented. Clear evidence is found for hard scattering in photoproduction interactions. Jets have been observed and used to examine the x γ distribution, indicating the need for a gluonic component in the photon. Hadronic final states and jet cross sections have been measured in deep inelastic scattering. A class of deep inelastic events with diffractive characteristics has been observed. The proton structure function F 2 (x, Q 2 ) has been measured in the new Bjorken-x region 10 -4 -2 and is found to rise with decreasing x. New limits for leptoquarks, squarks and excited electrons have been deduced. (orig.)

Multi-leptons with high transverse momentum at HERA

Energy Technology Data Exchange (ETDEWEB)

Aaron, F.D. [National Inst. for Physics and Nuclear Engineering (NIPNE), Bucharest (Romania); Bucharest Univ. (Romania). Faculty of Physics; Abramowicz, H. [Tel Aviv Univ. (Israel). Raymond and Beverly Sackler Faculty of Exact Sciences; Max-Planck-Inst., Muenchen (Germany); Abt, I. [Max-Planck-Inst., Muenchen (DE)] (and others)

2009-07-15

Events with at least two high transverse momentum leptons (electrons or muons) are studied using the H1 and ZEUS detectors at HERA with an integrated luminosity of 0.94 fb{sup -1}. The observed numbers of events are in general agreement with the Standard Model predictions. Seven di- and tri-lepton events are observed in e{sup +}p collision data with a scalar sum of the lepton transverse momenta above 100 GeV while 1.94{+-}0.17 events are expected. Such events are not observed in e{sup -}p collisions for which 1.19{+-}0.12 are predicted. Total visible and differential di-electron and di-muon photoproduction cross sections are extracted in a restricted phase space dominated by photon-photon collisions. (orig.)

Multi-leptons with high transverse momentum at HERA

International Nuclear Information System (INIS)

Aaron, F.D.; Abt, I.

2009-07-01

Events with at least two high transverse momentum leptons (electrons or muons) are studied using the H1 and ZEUS detectors at HERA with an integrated luminosity of 0.94 fb -1 . The observed numbers of events are in general agreement with the Standard Model predictions. Seven di- and tri-lepton events are observed in e + p collision data with a scalar sum of the lepton transverse momenta above 100 GeV while 1.94±0.17 events are expected. Such events are not observed in e - p collisions for which 1.19±0.12 are predicted. Total visible and differential di-electron and di-muon photoproduction cross sections are extracted in a restricted phase space dominated by photon-photon collisions. (orig.)

Muon Pair Production in ep Collisions at HERA

CERN Document Server

Aktas, A.; Anthonis, T.; Asmone, A.; Babaev, A.; Backovic, S.; Bahr, J.; Baranov, P.; Barrelet, E.; Bartel, W.; Baumgartner, S.; Becker, J.; Beckingham, M.; Behnke, O.; Behrendt, O.; Belousov, A.; Berger, C.; Berger, N.; Berndt, T.; Bizot, J.C.; Bohme, J.; Boenig, M.O.; Boudry, V.; Bracinik, J.; Braunschweig, W.; Brisson, V.; Broker, H.B.; Brown, D.P.; Bruncko, D.; Busser, F.W.; Bunyatyan, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Caron, S.; Cassol-Brunner, F.; Cerny, K.; Chekelian, V.; Collard, C.; Contreras, J.G.; Coppens, Y.R.; Coughlan, J.A.; Cousinou, M.C.; Cox, B.E.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Dau, W.D.; Daum, K.; Delcourt, B.; Delerue, N.; Demirchyan, R.; De Roeck, A.; Desch, K.; De Wolf, E.A.; Diaconu, C.; Dingfelder, J.; Dodonov, V.; Dowell, J.D.; Dubak, A.; Duprel, C.; Eckerlin, Guenter; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Ellerbrock, M.; Elsen, E.; Erdmann, M.; Erdmann, W.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Felst, R.; Ferencei, J.; Fleischer, M.; Fleischmann, P.; Fleming, Y.H.; Flucke, G.; Flugge, G.; Fomenko, A.; Foresti, I.; Formanek, J.; Franke, G.; Frising, G.; Gabathuler, E.; Gabathuler, K.; Garvey, J.; Gassner, J.; Gayler, Joerg; Gerhards, R.; Gerlich, C.; Ghazaryan, Samvel; Goerlich, L.; Gogitidze, N.; Gorbounov, S.; Grab, C.; Grabski, V.; Grassler, H.; Greenshaw, T.; Gregori, M.; Grindhammer, Guenter; Haidt, D.; Hajduk, L.; Haller, J.; Heinzelmann, G.; Henderson, R.C.W.; Henschel, H.; Henshaw, O.; Heremans, R.; Herrera, G.; Herynek, I.; Heuer, R.D.; Hildebrandt, M.; Hiller, K.H.; Hladky, J.; Hoting, P.; Hoffmann, D.; Horisberger, R.; Hovhannisyan, A.; Ibbotson, M.; Ismail, M.; Jacquet, M.; Janauschek, L.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, C.; Johnson, D.P.; Jung, H.; Kant, D.; Kapichine, M.; Karlsson, M.; Katzy, J.; Keller, N.; Kennedy, J.; Kenyon, I.R.; Kiesling, Christian M.; Klein, M.; Kleinwort, C.; Kluge, T.; Knies, G.; Knutsson, A.; Koblitz, B.; Kolya, S.D.; Korbel, V.; Kostka, P.; Koutouev, R.; Kropivnitskaya, A.; Kroseberg, J.; Kuckens, J.; Kuhr, T.; Landon, M.P.J.; Lange, W.; Lastovicka, T.; Laycock, P.; Lebedev, A.; Leissner, B.; Lemrani, R.; Lendermann, V.; Levonian, S.; List, B.; Lobodzinska, E.; Loktionova, N.; Lopez-Fernandez, R.; Lubimov, V.; Lueders, H.; Luders, S.; Luke, D.; Lux, T.; Lytkin, L.; Makankine, A.; Malden, N.; Malinovski, E.; Mangano, S.; Marage, P.; Marks, J.; Marshall, R.; Martisikova, M.; Martyn, H.U.; Martyniak, J.; Maxfield, S.J.; Meer, D.; Mehta, A.; Meier, K.; Meyer, A.B.; Meyer, H.; Meyer, J.; Michine, S.; Mikocki, S.; Milcewicz, I.; Milstead, D.; Moreau, F.; Morozov, A.; Morozov, I.; Morris, J.V.; Mozer, Matthias Ulrich; Muller, K.; Murin, P.; Nagovizin, V.; Naroska, B.; Naumann, J.; Naumann, T.; Newman, Paul R.; Niebuhr, C.; Nikitin, D.; Nowak, G.; Nozicka, M.; Olivier, B.; Olsson, J.E.; Ossoskov, G.; Ozerov, D.; Pascaud, C.; Patel, G.D.; Peez, M.; Perez, E.; Perieanu, A.; Petrukhin, A.; Pitzl, D.; Poschl, R.; Portheault, B.; Povh, B.; Raicevic, N.; Rauschenberger, J.; Reimer, P.; Reisert, B.; Risler, C.; Rizvi, E.; Robmann, P.; Roosen, R.; Rostovtsev, A.; Rurikova, Z.; Rusakov, S.; Rybicki, K.; Sankey, D.P.C.; Sauvan, E.; Schatzel, S.; Scheins, J.; Schilling, F.P.; Schleper, P.; Schmidt, S.; Schmitt, S.; Schneider, M.; Schoeffel, L.; Schoning, A.; Schroder, V.; Schultz-Coulon, H.C.; Schwanenberger, C.; Sedlak, K.; Sefkow, F.; Sheviakov, I.; Shtarkov, L.N.; Sirois, Y.; Sloan, T.; Smirnov, P.; Soloviev, Y.; South, D.; Spaskov, V.; Specka, Arnd E.; Spitzer, H.; Stamen, R.; Stella, B.; Stiewe, J.; Strauch, I.; Straumann, U.; Thompson, Graham; Thompson, P.D.; Tomasz, F.; Traynor, D.; Truoel, Peter; Tsipolitis, G.; Tsurin, I.; Turnau, J.; Tzamariudaki, E.; Uraev, A.; Urban, Marcel; Usik, A.; Valkar, S.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Trevino, A.Vargas; Vassiliev, S.; Vazdik, Y.; Veelken, C.; Vest, A.; Vichnevski, A.; Vinokurova, S.; Volchinski, V.; Wacker, K.; Wagner, J.; Waugh, B.; Weber, G.; Weber, R.; Wegener, D.; Werner, C.; Werner, N.; Wessels, M.; Wessling, B.; Winde, M.; Winter, G.G.; Wissing, C.; Woehrling, E.E.; Wunsch, E.; Yan, W.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhokin, A.; Zohrabyan, H.; Zomer, F.

2003-01-01

Cross sections for the production of two isolated muons up to high di-muon masses are measured in ep collisions at HERA with the H1 detector in a data sample corresponding to an integrated luminosity of 71 pb^-1 at a centre of mass energy of sqrt{s} = 319 GeV. The results are in good agreement with Standard Model predictions, the dominant process being photon-photon interactions. Additional muons or electrons are searched for in events with two high transverse momentum muons using the full data sample corresponding to 114 pb^-1, where data at sqrt{s} = 301 GeV and sqrt{s} = 319 GeV are combined. Both the di-lepton sample and the tri-lepton sample agree well with the predictions.

Measurement of Deeply Virtual Compton Scattering at HERA

CERN Document Server

Aktas, A.; Anthonis, T.; Aplin, S.; Asmone, A.; Astvatsatourov, A.; Babaev, A.; Backovic, S.; Bahr, J.; Baghdasaryan, A.; Baranov, P.; Barrelet, E.; Bartel, W.; Baudrand, S.; Baumgartner, S.; Becker, J.; Beckingham, M.; Behnke, O.; Behrendt, O.; Belousov, A.; Berger, Ch.; Berger, N.; Bizot, J.C.; Boenig, M.-O.; Boudry, V.; Bracinik, J.; Brandt, G.; Brisson, V.; Brown, D.P.; Bruncko, D.; Busser, F.W.; Bunyatyan, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Caron, S.; Cassol-Brunner, F.; Cerny, K.; Cerny, V.; Chekelian, V.; Contreras, J.G.; Coughlan, J.A.; Cox, B.E.; Cozzika, G.; Cvach, J.; Dainton, J.B.; Dau, W.D.; Daum, K.; de Boer, Y.; Delcourt, B.; Demirchyan, R.; De Roeck, A.; Desch, K.; De Wolf, E.A.; Diaconu, C.; Dodonov, V.; Dubak, A.; Eckerlin, Guenter; Efremenko, V.; Egli, S.; Eichler, R.; Eisele, F.; Ellerbrock, M.; Elsen, E.; Erdmann, W.; Essenov, S.; Falkewicz, A.; Faulkner, P.J.W.; Favart, L.; Fedotov, A.; Felst, R.; Ferencei, J.; Finke, L.; Fleischer, M.; Fleischmann, P.; Fleming, Y.H.; Flucke, G.; Fomenko, A.; Foresti, I.; Franke, G.; Frisson, T.; Gabathuler, E.; Garutti, E.; Gayler, J.; Gerlich, C.; Ghazaryan, Samvel; Ginzburgskaya, S.; Glazov, A.; Glushkov, I.; Goerlich, L.; Goettlich, M.; Gogitidze, N.; Gorbounov, S.; Goyon, C.; Grab, C.; Greenshaw, T.; Gregori, M.; Grell, B.R.; Grindhammer, Guenter; Gwilliam, C.; Haidt, D.; Hajduk, L.; Haller, J.; Hansson, M.; Heinzelmann, G.; Henderson, R.C.W.; Henschel, H.; Henshaw, O.; Herrera, G.; Hildebrandt, M.; Hiller, K.H.; Hoffmann, D.; Horisberger, R.; Hovhannisyan, A.; Ibbotson, M.; Ismail, M.; Jacquet, M.; Janauschek, L.; Janssen, X.; Jemanov, V.; Jonsson, L.; Johnson, D.P.; Jung, H.; Kapichine, M.; Katzy, J.; Keller, N.; Kenyon, I.R.; Kiesling, Christian M.; Klein, M.; Kleinwort, C.; Klimkovich, T.; Kluge, T.; Knies, G.; Knutsson, A.; Korbel, V.; Kostka, P.; Koutouev, R.; Krastev, K.; Kretzschmar, J.; Kropivnitskaya, A.; Kruger, K.; Kuckens, J.; Landon, M.P.J.; Lange, W.; Lastovicka, T.; Lastovicka-Medin, G.; Laycock, P.; Lebedev, A.; Leiner, B.; Lendermann, V.; Levonian, S.; Lindfeld, L.; Lipka, K.; List, B.; Lobodzinska, E.; Loktionova, N.; Lopez-Fernandez, R.; Lubimov, V.; Lucaci-Timoce, A.-I.; Lueders, H.; Luke, D.; Lux, T.; Lytkin, L.; Makankine, A.; Malden, N.; Malinovski, E.; Mangano, S.; Marage, P.; Marshall, R.; Martisikova, M.; Martyn, H.-U.; Maxeld, S.J.; Meer, D.; Mehta, A.; Meier, K.; Meyer, A.B.; Meyer, H.; Meyer, J.; Mikocki, S.; Milcewicz-Mika, I.; Milstead, D.; Mladenov, D.; Mohamed, A.; Moreau, F.; Morozov, A.; Morris, J.V.; Mozer, Matthias Ulrich; Muller, K.; Murin, P.; Nankov, K.; Naroska, B.; Naumann, Th.; Newman, Paul R.; Niebuhr, C.; Nikiforov, A.; Nikitin, D.; Nowak, G.; Nozicka, M.; Oganezov, R.; Olivier, B.; Olsson, J.E.; Osman, S.; Ozerov, D.; Palichik, V.; Panagoulias, I.; Papadopoulou, T.; Pascaud, C.; Patel, G.D.; Peez, M.; Perez, E.; Perez-Astudillo, D.; Perieanu, A.; Petrukhin, A.; Pitzl, D.; Placakyte, R.; Portheault, B.; Povh, B.; Prideaux, P.; Raicevic, N.; Reimer, P.; Rimmer, A.; Risler, C.; Rizvi, E.; Robmann, P.; Roland, B.; Roosen, R.; Rostovtsev, A.; Rurikova, Z.; Rusakov, S.; Salvaire, F.; Sankey, D.P.C.; Sauvan, E.; Schatzel, S.; Schilling, F.-P.; Schmidt, S.; Schmitt, S.; Schmitz, C.; Schoeffel, L.; Schoning, A.; Schroder, V.; Schultz-Coulon, H.-C.; Sedlak, K.; Sefkow, F.; Sheviakov, I.; Shtarkov, L.N.; Sirois, Y.; Sloan, T.; Smirnov, P.; Soloviev, Y.; South, D.; Spaskov, V.; Specka, Arnd E.; Stella, B.; Stiewe, J.; Strauch, I.; Straumann, U.; Tchoulakov, V.; Thompson, Graham; Thompson, P.D.; Tomasz, F.; Traynor, D.; Truoel, Peter; Tsakov, I.; Tsipolitis, G.; Tsurin, I.; Turnau, J.; Tzamariudaki, E.; Urban, Marcel; Usik, A.; Utkin, D.; Valkar, S.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Van Remortel, N.; Vargas Trevino, A.; Vazdik, Y.; Veelken, C.; Vest, A.; Vinokurova, S.; Volchinski, V.; Vujicic, B.; Wacker, K.; Wagner, J.; Weber, G.; Weber, R.; Wegener, D.; Werner, C.; Werner, N.; Wessels, M.; Wessling, B.; Wigmore, C.; Wissing, Ch.; Wolf, R.; Wunsch, E.; Xella, S.; Yan, W.; Yeganov, V.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhelezov, A.; Zhokin, A.; Zimmermann, J.; Zimmermann, T.; Zohrabyan, H.; Zomer, F.

2005-01-01

A measurement is presented of elastic deeply virtual Compton scattering \\gamma* p \\to \\gamma p made using e^+ p collision data corresponding to a luminosity of 46.5 pb^{-1}, taken with the H1 detector at HERA. The cross section is measured as a function of the photon virtuality, Q^2, the invariant mass of the \\gamma* p system, W, and for the first time, differentially in the squared momentum transfer at the proton vertex, t, in the kinematic range 2 < Q^2 < 80 GeV^2, 30 < W < 140 GeV and |t| < 1 GeV^2. QCD based calculations at next-to-leading order using generalized parton distributions can describe the data, as can colour dipole model predictions.

Beauty production at HERA using the ZEUS experiment

International Nuclear Information System (INIS)

Yaguees, A

2008-01-01

Beauty quark production in ep collisions is being studied with the ZEUS detector at HERA. The latest measurements of beauty production in deep inelastic scattering and photoproduction regime are presented. The first measurement exploits the potential of the ZEUS microvertex detector to identify beauty in photoproduction dijet events with a muon in the final state. The second is based on statistical methods to determine the fraction of beauty in photoproduction dijet events with an electron in the final state. Finally, the first measurement by ZEUS of the beauty contribution to the proton structure function, F 2 bb, in deep inelastic scattering is presented. The three measurements are compared with QCD predictions as well as with previous results. All the results presented here are preliminary

Heavy Quark Production in ep Collisions at HERA

International Nuclear Information System (INIS)

Bloch, I.

2006-01-01

Collisions of electrons with protons at a centre-of-mass energy of 318 GeV are being recorded by the two experiments H1 and ZEUS at the ep accelerator HERA at DESY, Hamburg (Germany). Measurements involving beauty and charm quarks, performed by these experiments, provide a good environment to test perturbative QCD predictions as the large quark mass supplies a hard scale. Recent measurements of beauty and charm production in ep collisions are presented here. QCD predictions at next-to-leading order are found to generally agree with the measurements. Beauty measurements however are sometimes slightly higher than the predicted cross sections. Beauty and charm contributions to the proton structure were also measured and are well described by QCD predictions

Photoproduction of isolated photons, inclusively and with a jet, at HERA

International Nuclear Information System (INIS)

Abramowicz, H.; Abt, I.; Adamczyk, L.; Adamus, M.; Aggarwal, R.; Antonelli, S.; Arslan, O.; Aushev, V.; Aushev, Y.; Bachynska, O.; Barakbaev, A.N.; Bartosik, N.; Behnke, O.; Behr, J.; Behrens, U.; Bertolin, A.; Bhadra, S.; Bloch, I.; Bokhonov, V.; Boos, E.G.

2014-01-01

The photoproduction of isolated photons, both inclusive and together with a jet, has been measured with the ZEUS detector at HERA using an integrated luminosity of 374 pb −1 . Differential cross sections are presented in the isolated-photon transverse-energy and pseudorapidity ranges 6 T γ γ T jet jet 2 2 . Differential cross sections are also presented for inclusive isolated-photon production as functions of the transverse energy and pseudorapidity of the photon. Higher-order theoretical calculations are compared to the results

Towards the phenomenology of QCD-instanton induced particle production at HERA

International Nuclear Information System (INIS)

Ringwald, A.; Schrempp, F.

1994-11-01

We present a first status report on a broad and systematic study of possible manifestations of QCD-instantons at HERA. Considerable motivation comes from the close analogy between instanton-induced B+L violation in electroweak processes and effects of QCD-instantons in deep inelastic scattering. We concentrate on the high multiplicity final state structure, reminiscent of an isotropically decaying 'fireball'. A set of experimental isolation criteria is proposed. They serve to further enhance the striking event signature without significantly suppressing the expected rates. (orig.)

Substrate-assisted mechanism of RNP disruption by the spliceosomal Brr2 RNA helicase

Science.gov (United States)

Theuser, Matthias; Höbartner, Claudia; Wahl, Markus C.; Santos, Karine F.

2016-01-01

The Brr2 RNA helicase disrupts the U4/U6 di-small nuclear RNA–protein complex (di-snRNP) during spliceosome activation via ATP-driven translocation on the U4 snRNA strand. However, it is unclear how bound proteins influence U4/U6 unwinding, which regions of the U4/U6 duplex the helicase actively unwinds, and whether U4/U6 components are released as individual molecules or as subcomplexes. Here, we set up a recombinant Brr2-mediated U4/U6 di-snRNP disruption system, showing that sequential addition of the U4/U6 proteins small nuclear ribonucleoprotein-associated protein 1 (Snu13), pre-mRNA processing factor 31 (Prp31), and Prp3 to U4/U6 di-snRNA leads to a stepwise decrease of Brr2-mediated U4/U6 unwinding, but that unwinding is largely restored by a Brr2 cofactor, the C-terminal Jab1/MPN domain of the Prp8 protein. Brr2-mediated U4/U6 unwinding was strongly inhibited by mutations in U4/U6 di-snRNAs that diminish the ability of U6 snRNA to adopt an alternative conformation but leave the number and kind of U4/U6 base pairs unchanged. Irrespective of the presence of the cofactor, the helicase segregated a Prp3-Prp31-Snu13-U4/U6 RNP into an intact Prp31-Snu13-U4 snRNA particle, free Prp3, and free U6 snRNA. Together, these observations suggest that Brr2 translocates only a limited distance on the U4 snRNA strand and does not actively release RNA-bound proteins. Unwinding is then completed by the partially displaced U6 snRNA adopting an alternative conformation, which leads to dismantling of the Prp3-binding site on U4/U6 di-snRNA but leaves the Prp31- and Snu13-binding sites on U4 snRNA unaffected. In this fashion, Brr2 can activate the spliceosome by stripping U6 snRNA of all precatalytic binding partners, while minimizing logistic requirements for U4/U6 di-snRNP reassembly after splicing. PMID:27354531

Dissection of the functional domains of an archaeal holliday junction helicase

DEFF Research Database (Denmark)

Hong, Ye; Chu, Mingzhu; Li, Yansheng

2012-01-01

Helicases and nucleases form complexes that play very important roles in DNA repair pathways some of which interact with each other at Holliday junctions. In this study, we present in vitro and in vivo analysis of Hjm and its interaction with Hjc in Sulfolobus. In vitro studies employed Hjm from...... conformation change of the enzyme. Furthermore, StoHjm is able to prevent the formation of Hjc/HJ high complex, suggesting a regulation mechanism of Hjm to the activity of Hjc. We show that Hjm is essential for cell viability using recently developed genetic system and mutant propagation assay, suggesting...

Yeast as a model system to study RecQ helicase function

DEFF Research Database (Denmark)

Ashton, Thomas M; Hickson, Ian David

2010-01-01

Mutations in the highly conserved RecQ helicase, BLM, cause the rare cancer predisposition disorder, Bloom's syndrome. The orthologues of BLM in Saccharomyces cerevisiae and Schizosaccharomyces pombe are SGS1 and rqh1(+), respectively. Studies in these yeast species have revealed a plethora...... of roles for the Sgs1 and Rqh1 proteins in repair of double strand breaks, restart of stalled replication forks, processing of aberrant intermediates that arise during meiotic recombination, and maintenance of telomeres. In this review, we focus on the known roles of Sgs1 and Rqh1 and how studies in yeast...

Search for first generation leptoquarks in ep collisions at HERA

Energy Technology Data Exchange (ETDEWEB)

Aaron, F.D. [National Institute for Physics and Nuclear Engineering (NIPNE), Bucharest (Romania); Bucharest Univ. (Romania). Faculty of Physics; Alexa, C. [National Institute for Physics and Nuclear Engineering (NIPNE), Bucharest (Romania); Andreev, V. [Lebedev Physical Institute, Moscow (RU)] (and others)

2011-07-15

A search for first generation scalar and vector leptoquarks produced in ep collisions is performed by the H1 experiment at HERA. The full H1 data sample is used in the analysis, corresponding to an integrated luminosity of 446 pb{sup -1}. No evidence for the production of leptoquarks is observed in final states with a large transverse momentum electron or with large missing transverse momentum, and constraints on leptoquark models are derived. For leptoquark couplings of electromagnetic strength {lambda}=0.3, first generation leptoquarks with masses up to 800 GeV are excluded at 95% confidence level. (orig.)

Search for single-top production in ep collisions at HERA

CERN Document Server

Abramowicz, H.

2012-02-14

A search for single-top production, $ep \\rightarrow etX$, has been performed with the ZEUS detector at HERA using data corresponding to an integrated luminosity of $0.37\\fbi$. No evidence for top production was found, consistent with the expectation from the Standard Model. Limits were computed for single-top production via flavour changing neutral current transitions. The result was combined with a previous ZEUS result yielding a total luminosity of 0.50fb-1. A 95% credibility level upper limit of 0.13 pb was obtained for the cross section at the centre-of-mass energy of $\\sqrt{s}=315\\gev$.

Forward-jet production in deep inelastic ep scattering at HERA

Energy Technology Data Exchange (ETDEWEB)

Chekanov, S.; Derrick, M.; Magill, S. [Argonne National Lab., IL (US)] (and others)

2007-07-15

Forward jet cross sections have been measured in neutral current deep inelastic scattering at low Bjorken-x with the ZEUS detector at HERA using an integrated luminosity of 81.8 pb{sup -1}. Measurements are presented for inclusive forward jets as well as for forward jets accompanied by a dijet system. The explored phase space, with jet pseudorapidity up to 4.3 is expected to be particularly sensitive to the dynamics of QCD parton evolution at low x. The measurements are compared to fixed-order QCD calculations and to leading-order parton-shower Monte Carlo models. (orig.)

Forward-jet production in deep inelastic ep scattering at HERA

International Nuclear Information System (INIS)

Chekanov, S.; Derrick, M.; Magill, S.

2007-07-01

Forward jet cross sections have been measured in neutral current deep inelastic scattering at low Bjorken-x with the ZEUS detector at HERA using an integrated luminosity of 81.8 pb -1 . Measurements are presented for inclusive forward jets as well as for forward jets accompanied by a dijet system. The explored phase space, with jet pseudorapidity up to 4.3 is expected to be particularly sensitive to the dynamics of QCD parton evolution at low x. The measurements are compared to fixed-order QCD calculations and to leading-order parton-shower Monte Carlo models. (orig.)

Search for First Generation Leptoquarks in ep Collisions at HERA

CERN Document Server

Aaron, F.D.; Andreev, V.; Backovic, S.; Baghdasaryan, A.; Baghdasaryan, S.; Barrelet, E.; Bartel, W.; Begzsuren, K.; Belousov, A.; Belov, P.; Bizot, J.C.; Boudry, V.; Bozovic-Jelisavcic, I.; Bracinik, J.; Brandt, G.; Brinkmann, M.; Brisson, V.; Britzger, D.; Bruncko, D.; Bunyatyan, A.; Buschhorn, G.; Bystritskaya, L.; Campbell, A.J.; Cantun Avila, K.B.; Ceccopieri, F.; Cerny, K.; Cerny, V.; Chekelian, V.; Contreras, J.G.; Coughlan, J.A.; Cvach, J.; Dainton, J.B.; Daum, K.; Delcourt, B.; Delvax, J.; De Wolf, E.A.; Diaconu, C.; Dobre, M.; Dodonov, V.; Dossanov, A.; Dubak, A.; Eckerlin, G.; Egli, S.; Eliseev, A.; Elsen, E.; Favart, L.; Fedotov, A.; Felst, R.; Feltesse, J.; Ferencei, J.; Fischer, D.J.; Fleischer, M.; Fomenko, A.; Gabathuler, E.; Gayler, J.; Ghazaryan, S.; Glazov, A.; Goerlich, L.; Gogitidze, N.; Gouzevitch, M.; Grab, C.; Grebenyuk, A.; Greenshaw, T.; Grell, B.R.; Grindhammer, G.; Habib, S.; Haidt, D.; Helebrant, C.; Henderson, R.C.W.; Hennekemper, E.; Henschel, H.; Herbst, M.; Herrera, G.; Hildebrandt, M.; Hiller, K.H.; Hoffmann, D.; Horisberger, R.; Hreus, T.; Huber, F.; Jacquet, M.; Janssen, X.; Jonsson, L.; Jung, H.; Kapichine, M.; Kenyon, I.R.; Kiesling, C.; Klein, M.; Kleinwort, C.; Kluge, T.; Kogler, R.; Kostka, P.; Kraemer, M.; Kretzschmar, J.; Kruger, K.; Landon, M.P.J.; Lange, W.; Lastovicka-Medin, G.; Laycock, P.; Lebedev, A.; Lendermann, V.; Levonian, S.; Lipka, K.; List, B.; List, J.; Lopez-Fernandez, R.; Lubimov, V.; Makankine, A.; Malinovski, E.; Marage, P.; Martyn, H.U.; Maxfield, S.J.; Mehta, A.; Meyer, A.B.; Meyer, H.; Meyer, J.; Mikocki, S.; Milcewicz-Mika, I.; Moreau, F.; Morozov, A.; Morris, J.V.; Mudrinic, M.; Muller, K.; Naumann, Th.; Newman, P.R.; Niebuhr, C.; Nikitin, D.; Nowak, G.; Nowak, K.; Olsson, J.E.; Ozerov, D.; Pahl, P.; Palichik, V.; Panagoulias, I.; Pandurovic, M.; Papadopoulou, Th.; Pascaud, C.; Patel, G.D.; Perez, E.; Petrukhin, A.; Picuric, I.; Piec, S.; Pirumov, H.; Pitzl, D.; Placakyte, R.; Pokorny, B.; Polifka, R.; Povh, B.; Radescu, V.; Raicevic, N.; Ravdandorj, T.; Reimer, P.; Rizvi, E.; Robmann, P.; Roosen, R.; Rostovtsev, A.; Rotaru, M.; Ruiz Tabasco, J.E.; Rusakov, S.; Salek, D.; Sankey, D.P.C.; Sauter, M.; Sauvan, E.; Schmitt, S.; Schoeffel, L.; Schoning, A.; Schultz-Coulon, H.C.; Sefkow, F.; Shtarkov, L.N.; Shushkevich, S.; Sloan, T.; Smiljanic, I.; Soloviev, Y.; Sopicki, P.; South, D.; Spaskov, V.; Specka, A.; Staykova, Z.; Steder, M.; Stella, B.; Stoicea, G.; Straumann, U.; Sykora, T.; Thompson, P.D.; Tran, T.H.; Traynor, D.; Truol, P.; Tsakov, I.; Tseepeldorj, B.; Turnau, J.; Urban, K.; Valkarova, A.; Vallee, C.; Van Mechelen, P.; Vazdik, Y.; Wegener, D.; Wunsch, E.; Zacek, J.; Zalesak, J.; Zhang, Z.; Zhokin, A.; Zohrabyan, H.; Zomer, F.

2011-10-25

A search for first generation scalar and vector leptoquarks produced in ep collisions is performed by the H1 experiment at HERA. The full H1 data sample is used in the analysis, corresponding to an integrated luminosity of 446 pb^-1. No evidence for the production of leptoquarks is observed in final states with a large transverse momentum electron or with large missing transverse momentum, and constraints on leptoquark models are derived. For leptoquark couplings of electromagnetic strength lambda=0.3, first generation leptoquarks with masses up to 800 GeV are excluded at 95% confidence level.

Asymmetry distributions and mass effects in dijet-events at a polarized HERA

CERN Document Server

Maul, M; Mirkes, E; Rädel, G

1998-01-01

The asymmetry distributions for several kinematic variables are considered for finding a systematic way to maximize the signal for the extraction of the polarized gluon density. The relevance of mass effects for the corresponding dijet cross section is discussed and the different approximations for including mass effects are compared. We also compare via the programs PEPSI and MEPJET two different Monte Carlo (MC) approaches for simulating the expected signal in the dijet asymmetry at a polarized HERA.

Determination of the integrated luminosity at HERA using elastic QED Compton events

International Nuclear Information System (INIS)

Aaron, F.D.; Alexa, C.; Rotaru, M.; Stoicea, G.; Andreev, V.; Belousov, A.; Eliseev, A.; Fomenko, A.; Gogitidze, N.; Lebedev, A.; Malinovski, E.; Rusakov, S.; Shtarkov, L.N.; Vazdik, Y.; Backovic, S.; Dubak, A.; Lastovicka-Medin, G.; Picuric, I.; Raicevic, N.; Baghdasaryan, A.; Baghdasaryan, S.; Zohrabyan, H.; Barrelet, E.; Bartel, W.; Belov, P.; Brandt, G.; Brinkmann, M.; Britzger, D.; Campbell, A.J.; Eckerlin, G.; Elsen, E.; Felst, R.; Fischer, D.J.; Fleischer, M.; Gayler, J.; Ghazaryan, S.; Glazov, A.; Gouzevitch, M.; Grebenyuk, A.; Habib, S.; Haidt, D.; Kleinwort, C.; Kraemer, M.; Levonian, S.; Lipka, K.; List, B.; List, J.; Lobodzinski, B.; Meyer, A.B.; Meyer, J.; Niebuhr, C.; Olsson, J.E.; Ozerov, D.; Pahl, P.; Panagoulias, I.; Papadopoulou, T.; Petrukhin, A.; Pitzl, D.; Placakyte, R.; Radescu, V.; Schmitt, S.; Sefkow, F.; Shushkevich, S.; South, D.; Steder, M.; Wuensch, E.; Begzsuren, K.; Ravdandorj, T.; Tseepeldorj, B.; Bizot, J.C.; Brisson, V.; Delcourt, B.; Jacquet, M.; Pascaud, C.; Tran, T.H.; Zhang, Z.; Zomer, F.; Boudry, V.; Moreau, F.; Specka, A.; Bozovic-Jelisavcic, I.; Pandurovic, M.; Bracinik, J.; Kenyon, I.R.; Newman, P.R.; Thompson, P.D.; Bruncko, D.; Cerny, V.; Ferencei, J.; Bunyatyan, A.; Bylinkin, A.; Bystritskaya, L.; Fedotov, A.; Lubimov, V.; Rostovtsev, A.; Zhokin, A.; Cantun Avila, K.B.; Contreras, J.G.; Ruiz Tabasco, J.E.; Ceccopieri, F.; Delvax, J.; Wolf, E.A. de; Favart, L.; Hreus, T.; Janssen, X.; Roosen, R.; Staykova, Z.; Mechelen, P. van; Cerny, K.; Pokorny, B.; Polifka, R.; Salek, D.; Valkarova, A.; Zacek, J.; Zlebcik, R.; Chekelian, V.; Grindhammer, G.; Kiesling, C.; Coughlan, J.A.; Morris, J.V.; Sankey, D.P.C.; Cvach, J.; Reimer, P.; Zalesak, J.; Dainton, J.B.; Gabathuler, E.; Greenshaw, T.; Klein, M.; Kluge, T.; Kretzschmar, J.; Laycock, P.; Maxfield, S.J.; Mehta, A.; Patel, G.D.; Daum, K.; Meyer, H.; Diaconu, C.; Hoffmann, D.; Sauvan, E.; Vallee, C.; Dobre, M.; Kogler, R.; Nowak, K.; Dodonov, V.; Povh, B.; Dossanov, A.; Egli, S.; Hildebrandt, M.; Horisberger, R.; Feltesse, J.; Perez, E.; Schoeffel, L.; Goerlich, L.; Mikocki, S.; Milcewicz-Mika, I.; Nowak, G.; Sopicki, P.; Turnau, J.; Grab, C.; Henderson, R.C.W.; Sloan, T.; Hennekemper, E.; Herbst, M.; Krueger, K.; Lendermann, V.; Schultz-Coulon, H.C.; Henschel, H.; Hiller, K.H.; Kostka, P.; Lange, W.; Naumann, T.; Herrera, G.; Lopez-Fernandez, R.; Huber, F.; Pirumov, H.; Sauter, M.; Schoening, A.; Joensson, L.; Jung, H.; Kapichine, M.; Morozov, A.; Nikitin, D.; Palichik, V.; Spaskov, V.; Landon, M.P.J.; Rizvi, E.; Traynor, D.; Martyn, H.U.; Mueller, K.; Robmann, P.; Straumann, U.; Truoel, P.; Soloviev, Y.; Stella, B.; Sykora, T.; Tsakov, I.; Wegener, D.

2012-01-01

A measurement of the integrated luminosity at the ep collider HERA is presented, exploiting the elastic QED Compton process ep→eγp. The electron and the photon are detected in the backward calorimeter of the H1 experiment. The integrated luminosity of the data recorded in 2003 to 2007 is determined with a precision of 2.3 %. The measurement is found to be compatible with the corresponding result obtained using the Bethe-Heitler process. (orig.)

Determination of the integrated luminosity at HERA using elastic QED Compton events

Energy Technology Data Exchange (ETDEWEB)

Aaron, F.D. [National Institute for Physics and Nuclear Engineering (NIPNE), Bucharest (Romania); Bucharest Univ. (Romania). Faculty of Physics; Alexa, C. [National Institute for Physics and Nuclear Engineering (NIPNE), Bucharest (Romania); Andreev, V. [Lebedev Physical Institute, Moscow (RU)] (and others)

2012-04-15

A measurement of the integrated luminosity at the ep collider HERA is presented, exploiting the elastic QED Compton process ep{yields}e{gamma}p. The electron and the photon are detected in the backward calorimeter of the H1 experiment. The integrated luminosity of the data recorded in 2003 to 2007 is determined with a precision of 2.3%. The measurement is found to be compatible with the corresponding result obtained using the Bethe-Heitler process.

Production of Z 0 bosons in elastic and quasi-elastic ep collisions at HERA

NARCIS (Netherlands)

Abramowicz, A.; et al., [Unknown; Koffeman, E.; Kooijman, P.

2013-01-01

The production of Z0Z0 bosons in the reaction ep→eZ0p(*)ep→eZ0p(*), where )p(*) stands for a proton or a low-mass nucleon resonance, has been studied in ep collisions at HERA using the ZEUS detector. The analysis is based on a data sample collected between 1996 and 2007, amounting to 496 pb−1496

Production of Z0 bosons in elastic and quasi-elastic ep collisions at HERA

NARCIS (Netherlands)

Abramowicz, H.; Kooijman, P.; Zotkin, D.S.

2013-01-01

The production of Z0 bosons in the reaction ep →eZ0 p(∗), where p(∗) stands for a proton or a lowmass nucleon resonance, has been studied in ep collisions at HERA using the ZEUS detector. The analysis is based on a data sample collected between 1996 and 2007, amounting to 496 pb−1 of integrated

Study of {chi}{sub c} production using HERA-B data

Energy Technology Data Exchange (ETDEWEB)

Aleksandrov, Aleksandar

2010-07-15

In this thesis the production of the charmonium states {chi}{sub c1} and {chi}{sub c2} in protonnucleus collisions at a proton-nucleon center-of-mass energy {radical}(s)=41.6 GeV was studied. The data used for the analysis have been taken by the fixed-target experiment HERA-B that uses the HERA proton beam to scatter protons off the nuclei of different wire targets. About 122.10{sup 3} recorded muonic J/{psi} decays, J/{psi}{yields}{mu}{sup +}{mu}{sup -}, resulted in almost 10000 reconstructed {chi}{sub c}{yields}J/{psi}{gamma}. The ratio R{sub {chi}{sub c}}= sum {sub i=1,2}{sigma}({chi}{sub ci})Br({chi}{sub ci}{yields}J/{psi}{gamma})/{sigma}(J/{psi}), which is the ratio of J/{psi} from {chi}{sub c} decays to all produced J/{psi}, was measured in the kinematical range -0.35HERA-B, and assuming fully

Unwinding after high salinity stress: Pea DNA helicase 45 over- expression in tobacco confers high salinity tolerance without affecting yield (abstract)

International Nuclear Information System (INIS)

Tuteja, N.

2005-01-01

Soil salinity is an increasing threat for agriculture and is a major factor in reducing plant productivity; therefore, it is necessary to obtain salinity-tolerant varieties. A typical characteristic of soil salinity is the induction of multiple stress- inducible genes. Some of the genes encoding osmolytes, ion channels or enzymes are able to confer salinity-tolerant phenotypes when transferred to sensitive plants. As salinity stress affects the cellular gene-expression machinery, it is evident that molecules involved in nucleic acid processing including helicases, are likely to be affected as well. DNA helicases unwind duplex DNA and are involved in replication, repair, recombination and transcription while RNA helicases unfold the secondary structures in RNA and are involved in transcription, ribosome biogenesis and translation initiation. We have earlier reported the isolation of a pea DNA helicase 45 (PDH45) that exhibits striking homology with eIF-4A (Plant J. 24:219-230,2000). Here we report that PDH45 mRNA is induced in pea seedlings in response to high salt and its over- expression driven by a constitutive CAMV-355-promoter in tobacco plants confers salinity tolerance, thus suggesting a new pathway for manipulating stress tolerance in crop plants. The T0 transgenic plants showed high-levels of PDH45 protein in normal and stress conditions, as compared to wild type (WT) plants. The T0 transgenics also showed tolerance to high salinity as tested by a leaf disc senescence assay. The T1 transgenics were able to grow to maturity and set normal viable seeds under continuous salinity stress, without any reduction in plant yield, in terms of seed weight. Measurement of Na/sup +/ ions in different parts of the plant showed higher accumulation in the old leaves and negligible in seeds of T1 transgenic lines as compared with the WT plants. The possible mechanism of salinity tolerance will be discussed. Over-expression of PDH45 provides a possible example of the

Measurement of charm and beauty production in deep inelastic scattering at HERA using semi-leptonic decays into muons

International Nuclear Information System (INIS)

Bindi, Marcello

2008-10-01

In this thesis the experimental study of the process ep→ec anti cX at HERA is described. The differential cross sections in dependence on the transverse momentum and rapidity of the decay muon are presented. (HSI)

The Hadronic Final State in Deep Inelastic ep Scattering at Low Bjorken-x at HERA

International Nuclear Information System (INIS)

Goerlich, L.M.

2006-01-01

The electron-proton collider HERA with centre of mass system energy of about 300 GeV has extended the available kinematic regime in deep inelastic scattering to low values of Bjorken-x (10 -5 -10 -3 ) and made possible studies of the QCD dynamics in this region. The processes in which partons carry a very small fraction of the proton momentum may show deviations from the standard DGLAP dynamics and it is believed that their correct description is provided by the BFKL evolution formalism. Low x phenomena have been initially studied with the HERA data on F 2 structure function and later with more exclusive measurements of the hadronic final state. In this report recent results of these studies and especially dedicated measurements of jets and π 0 mesons, produced close to the proton remnant, are reviewed. The data are used to discriminate between QCD models with different parton evolution approximations. For completeness, measurements at e + e - and p-p colliders sensitive to the BFKL dynamics are also described. (author)

CMG helicase and DNA polymerase ε form a functional 15-subunit holoenzyme for eukaryotic leading-strand DNA replication.

Science.gov (United States)

Langston, Lance D; Zhang, Dan; Yurieva, Olga; Georgescu, Roxana E; Finkelstein, Jeff; Yao, Nina Y; Indiani, Chiara; O'Donnell, Mike E

2014-10-28

DNA replication in eukaryotes is asymmetric, with separate DNA polymerases (Pol) dedicated to bulk synthesis of the leading and lagging strands. Pol α/primase initiates primers on both strands that are extended by Pol ε on the leading strand and by Pol δ on the lagging strand. The CMG (Cdc45-MCM-GINS) helicase surrounds the leading strand and is proposed to recruit Pol ε for leading-strand synthesis, but to date a direct interaction between CMG and Pol ε has not been demonstrated. While purifying CMG helicase overexpressed in yeast, we detected a functional complex between CMG and native Pol ε. Using pure CMG and Pol ε, we reconstituted a stable 15-subunit CMG-Pol ε complex and showed that it is a functional polymerase-helicase on a model replication fork in vitro. On its own, the Pol2 catalytic subunit of Pol ε is inefficient in CMG-dependent replication, but addition of the Dpb2 protein subunit of Pol ε, known to bind the Psf1 protein subunit of CMG, allows stable synthesis with CMG. Dpb2 does not affect Pol δ function with CMG, and thus we propose that the connection between Dpb2 and CMG helps to stabilize Pol ε on the leading strand as part of a 15-subunit leading-strand holoenzyme we refer to as CMGE. Direct binding between Pol ε and CMG provides an explanation for specific targeting of Pol ε to the leading strand and provides clear mechanistic evidence for how strand asymmetry is maintained in eukaryotes.

Measurement of J/{psi} helicity distributions in inelastic photoproduction at HERA

Energy Technology Data Exchange (ETDEWEB)

Chekanov, S.; Derrick, M.; Magill, S. [Argonne National Lab., Argonne, IL (US)] (and others)

2009-06-15

The J/{psi} decay angular distributions have been measured in inelastic photoproduction in ep collisions with the ZEUS detector at HERA, using an integrated luminosity of 468 pb{sup -1}. The range in photon-proton centre-of-mass energy, W, was 50

A search for excited fermions in electron-proton collisions at HERA

International Nuclear Information System (INIS)

Derrick, M.; Krakauer, D.; Magill, S.

1994-10-01

A search for excited states of the standard model fermions was performed using the ZEUS detector at the HERA electron-proton collider, operating at a centre of mass enery of 296 GeV. In a sample corresponding to an integrated luminosity of 0.55 pb -1 , no evidence was found for any resonant state decaying into final states composed of a fermion and a gauge boson. Limits on the coupling strength times branching ratio of excited fermions are presented for masses between 50 GeV and 250 GeV, extending previous search regions significantly. (orig.)

From HERA to the Tevatron: A scaling law in hard diffraction

International Nuclear Information System (INIS)

Goulianos, K.

1997-01-01

Results on hard diffraction from CDF are reviewed and compared with predictions based on the diffractive structure function of the proton measured in deep inelastic scattering at HERA. The predictions are generally larger than the measured rates by a factor of ∼ 6, suggesting a breakdown of conventional factorization. Correct predictions are obtained by scaling the rapidity gap probability distribution of the diffractive structure function to the total integrated gap probability. The scaling of the gap probability is traced back to the pomeron flux renormalization hypothesis, which was introduced to unitarize the soft diffraction amplitude