Decadal-scale changes of dinoflagellates and diatoms in the anomalous baltic sea spring bloom.

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Riina Klais

Full Text Available The algal spring bloom in the Baltic Sea represents an anomaly from the winter-spring bloom patterns worldwide in terms of frequent and recurring dominance of dinoflagellates over diatoms. Analysis of approximately 3500 spring bloom samples from the Baltic Sea monitoring programs revealed (i that within the major basins the proportion of dinoflagellates varied from 0.1 (Kattegat to >0.8 (central Baltic Proper, and (ii substantial shifts (e.g. from 0.2 to 0.6 in the Gulf of Finland in the dinoflagellate proportion over four decades. During a recent decade (1995-2004 the proportion of dinoflagellates increased relative to diatoms mostly in the northernmost basins (Gulf of Bothnia, from 0.1 to 0.4 and in the Gulf of Finland, (0.4 to 0.6 which are typically ice-covered areas. We hypothesize that in coastal areas a specific sequence of seasonal events, involving wintertime mixing and resuspension of benthic cysts, followed by proliferation in stratified thin layers under melting ice, favors successful seeding and accumulation of dense dinoflagellate populations over diatoms. This head-start of dinoflagellates by the onset of the spring bloom is decisive for successful competition with the faster growing diatoms. Massive cyst formation and spreading of cyst beds fuel the expanding and ever larger dinoflagellate blooms in the relatively shallow coastal waters. Shifts in the dominant spring bloom algal groups can have significant effects on major elemental fluxes and functioning of the Baltic Sea ecosystem, but also in the vast shelves and estuaries at high latitudes, where ice-associated cold-water dinoflagellates successfully compete with diatoms.

A mesoscale iron enrichment in the western subarctic Pacific induces a large centric diatom bloom.

Science.gov (United States)

Tsuda, Atsushi; Takeda, Shigenobu; Saito, Hiroaki; Nishioka, Jun; Nojiri, Yukihiro; Kudo, Isao; Kiyosawa, Hiroshi; Shiomoto, Akihiro; Imai, Keiri; Ono, Tsuneo; Shimamoto, Akifumi; Tsumune, Daisuke; Yoshimura, Takeshi; Aono, Tatsuo; Hinuma, Akira; Kinugasa, Masatoshi; Suzuki, Koji; Sohrin, Yoshiki; Noiri, Yoshifumi; Tani, Heihachiro; Deguchi, Yuji; Tsurushima, Nobuo; Ogawa, Hiroshi; Fukami, Kimio; Kuma, Kenshi; Saino, Toshiro

2003-05-09

We have performed an in situ test of the iron limitation hypothesis in the subarctic North Pacific Ocean. A single enrichment of dissolved iron caused a large increase in phytoplankton standing stock and decreases in macronutrients and dissolved carbon dioxide. The dominant phytoplankton species shifted after the iron addition from pennate diatoms to a centric diatom, Chaetoceros debilis, that showed a very high growth rate, 2.6 doublings per day. We conclude that the bioavailability of iron regulates the magnitude of the phytoplankton biomass and the key phytoplankton species that determine the biogeochemical sensitivity to iron supply of high-nitrate, low-chlorophyll waters.

Particulate Trace Element Cycling in a Diatom Bloom at Station ALOHA

Science.gov (United States)

Weisend, R.; Morton, P. L.; Landing, W. M.; Fitzsimmons, J. N.; Hayes, C. T.; Boyle, E. A.

2014-12-01

Phytoplankton in oligotrophic marine deserts depend on remote sources to supply trace nutrients. To examine these sources, marine particulate matter samples from the central North Pacific (Station ALOHA) were collected during the July-August 2012 HOE-DYLAN cruises and analyzed for a suite of trace (e.g., Fe, Mn) and major (e.g. Al, P) elements. Daily surface SPM samples were examined for evidence of atmospheric deposition and biological uptake, while five vertical profiles were examined for evidence of surface vertical export and subsurface horizontal transport from nearby sources (e.g., margin sediments, hydrothermal plumes). Maxima in surface particulate P (a biological tracer) corresponded with a diatom bloom, and surprisingly also coincided with maxima in particulate Al (typically a tracer for lithogenic inputs). The surface particulate Al distributions likely result from the adsorption of dissolved Al onto diatom silica frustules, not from atmospheric dust deposition. In addition, a subsurface maximum in particulate Al and P was observed four days later at 75m, possibly resulting from vertical export of the surface diatom bloom. The distributions of other bioactive trace elements (e.g. Cd, Co, Cu) will be presented in the context of the diatom bloom and other biological, chemical and physical features. A second, complementary poster is also being presented which examines the cycling of trace elements in lithogenic particles (Morton et al., "Trace Element Cycling in Lithogenic Particles at Station ALOHA").

A conceptual model for the growth, persistence, and blooming behavior of the benthic mat-forming diatom Didymosphenia geminata (Invited)

Science.gov (United States)

Cullis, J. D.; Gillis, C.; Bothwell, M.; Kilroy, C.; Packman, A. I.; Hassan, M. A.

2010-12-01

The nuisance diatom Didymosphenia geminata (didymo) presents an ecological paradox. How can this benthic algae produce such large amounts of biomass in cold, fast flowing, low nutrient streams? The aim of this paper is to present a conceptual model for the growth, persistence, and blooming behavior of this benthic mat-forming diatom that may help to explain this paradox. The conceptual model highlights the importance of distinguishing between mat thickness and cell growth. It presents evidence gathered from a range of existing studies around the world to support the proposed relationship between growth and light, nutrients and temperature as well as the importance of flood events and bed disturbance in mat removal. It is anticipated that this conceptual model will not only help in identifying the key controlling variables and set a framework for future studies but also support the future management of this nuisance algae. Summary of the conceptual model for didymo growth showing the proposed relationships for the growth of cells and mats with nutrients, radiation and water temperature and the dependence of removal on bed shear stress and the potential for physical bed disturbance.

Host-Specificity and Dynamics in Bacterial Communities Associated with Bloom-Forming Freshwater Phytoplankton

Science.gov (United States)

Bagatini, Inessa Lacativa; Eiler, Alexander; Bertilsson, Stefan; Klaveness, Dag; Tessarolli, Letícia Piton; Vieira, Armando Augusto Henriques

2014-01-01

Many freshwater phytoplankton species have the potential to form transient nuisance blooms that affect water quality and other aquatic biota. Heterotrophic bacteria can influence such blooms via nutrient regeneration but also via antagonism and other biotic interactions. We studied the composition of bacterial communities associated with three bloom-forming freshwater phytoplankton species, the diatom Aulacoseira granulata and the cyanobacteria Microcystis aeruginosa and Cylindrospermopsis raciborskii. Experimental cultures incubated with and without lake bacteria were sampled in three different growth phases and bacterial community composition was assessed by 454-Pyrosequencing of 16S rRNA gene amplicons. Betaproteobacteria were dominant in all cultures inoculated with lake bacteria, but decreased during the experiment. In contrast, Alphaproteobacteria, which made up the second most abundant class of bacteria, increased overall during the course of the experiment. Other bacterial classes responded in contrasting ways to the experimental incubations causing significantly different bacterial communities to develop in response to host phytoplankton species, growth phase and between attached and free-living fractions. Differences in bacterial community composition between cyanobacteria and diatom cultures were greater than between the two cyanobacteria. Despite the significance, major differences between phytoplankton cultures were in the proportion of the OTUs rather than in the absence or presence of specific taxa. Different phytoplankton species favoring different bacterial communities may have important consequences for the fate of organic matter in systems where these bloom forming species occur. The dynamics and development of transient blooms may also be affected as bacterial communities seem to influence phytoplankton species growth in contrasting ways. PMID:24465807

Aggregate Formation During the Viral Lysis of a Marine Diatom

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Yosuke Yamada

2018-05-01

Full Text Available Recent studies have suggested that the viral lysis of microbes not only facilitates the conversion of particulate organic matter into dissolved organic matter, but also promotes the formation of organic aggregates, which enhance the export of organic carbon from the surface ocean to the deep sea. However, experimental data supporting this proposition are limited. Here, we tested the hypothesis that the viral infection of marine diatoms enhances aggregate formation. We used a model system consisting of Chaetoceros tenuissimus, a bloom-forming diatom with an approximate cell size of 3–10 μm, and a DNA virus, CtenDNAV type II, which replicates in the nucleus of C. tenuissimus. The volume of large particles (50–400 μm in equivalent spherical diameters, determined from photographic images was measured over time (up to 15 days in the diatom-alone control and a virus-added diatom culture. We also determined the concentrations of Coomassie-stainable particles (CSP, proteinaceous particles and transparent exopolymeric particles (TEP, acid-polysaccharide-rich particles with colorimetric methods. The total volume of large particles was significantly higher (5–59 fold in the virus-added diatoms than in the diatom-alone control during the period in which the viral lysis of the diatoms proceeded. One class of large particles produced in the virus-added diatoms was flake-shaped. The flakes were tightly packed and dense, and sank rapidly, possibly playing an important role in the vertical delivery of materials from the surface to the deep sea. The bulk CSP concentrations tended to be higher in the virus-added diatoms than in the diatom-alone control, whereas the reverse was true for the TEP. These results suggest that proteinaceous polymers are involved in aggregate formation. Our data support the emerging notion that the viral lysis of microbes facilitates aggregate formation and the export of organic carbon in the ocean.

Winter atmospheric circulation signature for the timing of the spring bloom of diatoms in the North Sea

Science.gov (United States)

Lohmann, Gerrit; Wiltshire, Karen

2015-04-01

Analysing long-term diatom data from the German Bight and observational climate data for the period 1962-2005, we found a close connection of the inter-annual variation of the timing of the spring bloom with the boreal winter atmospheric circulation. We examined the fact that high diatom counts of the spring bloom tended to occur later when the atmospheric circulation was characterized by winter blocking over Scandinavia. The associated pattern in the sea level pressure showed a pressure dipole with two centres located over the Azores and Norway and was tilted compared to the North Atlantic Oscillation. The bloom was earlier when the cyclonic circulation over Scandinavia allowed an increased inflow of Atlantic water into the North Sea which is associated with clearer, more marine water, and warmer conditions. The bloom was later when a more continental atmospheric flow from the east was detected. At Helgoland Roads, it seems that under turbid water conditions (= low light) zooplankton grazing can affect the timing of the phytoplankton bloom negatively. Warmer water temperatures will facilitate this. Under clear water conditions, light will be the main governing factor with regard to the timing of the spring bloom. These different water conditions are shown here to be mainly related to large-scale weather patterns. We found that the mean diatom bloom could be predicted from the sea level pressure one to three months in advance. Using historical pressure data, we derived a proxy for the timing of the spring bloom over the last centuries, showing an increased number of late (proxy-) blooms during the eighteenth century when the climate was considerably colder than today. We argue that these variations are important for the interpretation of inter-annual to centennial variations of biological processes. This is of particular interest when considering future scenarios, as well to considerations on past and future effects on the primary production and food webs.

A conceptual model for the blooming behavior and persistence of the benthic mat-forming diatom Didymosphenia geminata in oligotrophic streams

Science.gov (United States)

Cullis, James D. S.; Gillis, Carole-Anne; Bothwell, Max L.; Kilroy, Cathy; Packman, Aaron; Hassan, Marwan

2012-06-01

The benthic, mat-forming diatomDidymosphenia geminata has the unique ability to produce large amounts of algal biomass under oligotrophic conditions in cold, fast flowing streams and rivers. This presents an ecological paradox that challenges our current understanding of stream ecosystem dynamics. Our understanding of the drivers of D. geminata ecology is still limited. Here we present a conceptual model for the blooming behavior and persistence of this species to advance scientific understanding of strategies for life in fast flowing oligotrophic waters and support the design of future research and mitigation measures for nuisance algal blooms. The conceptual model is based on a synthesis of data and ideas from a range of disciplines including hydrology, geomorphology, biogeochemistry, and ecology. The conceptual model highlights the role of water chemistry, river morphology, and flow thresholds in defining the habitat window for D. geminata. We propose that bed disturbance is a primary control on accumulation and persistence of D. geminataand that the removal threshold can be determined by synthesizing site-specific information on hydrology and geomorphology. Further, we propose that a key to understanding the didymo paradox is the separation of cellular reproduction and mat morphology with specific controls acting in respect of the different processes.

Bacterial and protist community changes during a phytoplankton bloom

KAUST Repository

Pearman, John K.

2015-10-01

The present study aims to characterize the change in the composition and structure of the bacterial and microzooplankton planktonic communities in relation to the phytoplankton community composition during a bloom. High-throughput amplicon sequencing of regions of the 16S and 18S rRNA gene was undertaken on samples collected during a 20 day (d) mesocosm experiment incorporating two different nutrient addition treatments [Nitrate and Phosphate (NPc) and Nitrate, Phosphate and Silicate (NPSc)] as well as a control. This approach allowed us to discriminate the changes in species composition across a broad range of phylogenetic groups using a common taxonomic level. Diatoms dominated the bloom in the NPSc treatment while dinoflagellates were the dominant phytoplankton in the control and NPc treatment. Network correlations highlighted significant interactions between OTUs within each treatment including changes in the composition of Paraphysomonas OTUs when the dominant Chaetoceros OTU switched. The microzooplankton community composition responded to changes in the phytoplankton composition while the prokaryotic community responded more to changes in ammonia concentration.

Characterisation of transparent exopolymer particles (TEP) produced during algal bloom: A membrane treatment perspective

KAUST Repository

Villacorte, Loreen O.

2013-01-01

Algal blooms are currently a major concern of the membrane industry as it generates massive concentrations of organic matter (e.g. transparent exopolymer particles [TEP]), which can adversely affect the operation of membrane filtration systems. The goal of this study is to understand the production, composition and membrane rejection of these organic materials using different characterisation techniques. Two common species of bloom-forming freshwater and marine algae were cultivated in batch cultures for 30days and the productions of TEP and other organic matter were monitored at different growth phases. TEP production of the marine diatom, Chaetoceros affinis, produced 6-9 times more TEP than the freshwater blue-green algae, Microcystis. The organic substances produced by both algal species were dominated by biopolymeric substances such as polysaccharides (45-64%) and proteins (2-17%) while the remaining fraction comprises of low molecular weight refractory (humic-like) and/ or biogenic organic substances. MF/UF membranes mainly rejected the biopolymers but not the low molecular weight organic materials. MF membranes (0.1-0.4 lm) rejected 42-56% of biopolymers, while UF membranes (10-100 kDa) rejected 65-95% of these materials. Further analysis of rejected organic materials on the surface of the membranes revealed that polysac-charides and proteins are likely responsible for the fouling of MF/UF systems during an algal bloom situation. © 2013 Desalination Publications.

Molecular evidence of the toxic effects of diatom diets on gene expression patterns in copepods.

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Chiara Lauritano

Full Text Available Diatoms are dominant photosynthetic organisms in the world's oceans and are considered essential in the transfer of energy through marine food chains. However, these unicellular plants at times produce secondary metabolites such as polyunsaturated aldehydes and other products deriving from the oxidation of fatty acids that are collectively termed oxylipins. These cytotoxic compounds are responsible for growth inhibition and teratogenic activity, potentially sabotaging future generations of grazers by inducing poor recruitment in marine organisms such as crustacean copepods.Here we show that two days of feeding on a strong oxylipin-producing diatom (Skeletonema marinoi is sufficient to inhibit a series of genes involved in aldehyde detoxification, apoptosis, cytoskeleton structure and stress response in the copepod Calanus helgolandicus. Of the 18 transcripts analyzed by RT-qPCR at least 50% were strongly down-regulated (aldehyde dehydrogenase 9, 8 and 6, cellular apoptosis susceptibility and inhibitor of apoptosis IAP proteins, heat shock protein 40, alpha- and beta-tubulins compared to animals fed on a weak oxylipin-producing diet (Chaetoceros socialis which showed no changes in gene expression profiles.Our results provide molecular evidence of the toxic effects of strong oxylipin-producing diatoms on grazers, showing that primary defense systems that should be activated to protect copepods against toxic algae can be inhibited. On the other hand other classical detoxification genes (glutathione S-transferase, superoxide dismutase, catalase, cytochrome P450 were not affected possibly due to short exposure times. Given the importance of diatom blooms in nutrient-rich aquatic environments these results offer a plausible explanation for the inefficient use of a potentially valuable food resource, the spring diatom bloom, by some copepod species.

Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi

DEFF Research Database (Denmark)

Amato, Alberto; Sabatino, Valeria; Nylund, Göran M.

2018-01-01

Diatoms and copepods are main actors in marine food webs. The prey-predator interactions between them affect bloom dynamics, shape marine ecosystems and impact the energy transfer to higher trophic levels. Recently it has been demonstrated that the presence of grazers may affect the diatom prey b...

Adaptive significance of phytoplankton stickiness with emphasis on the diatom Skeletonema costatum

DEFF Research Database (Denmark)

Hansen, J.L.S.; Timm, U.; Kiørboe, Thomas

1995-01-01

Diatom aggregate formation was analyzed using coagulation theory. Population dynamics models show that coagulation has an important impact on species succession during diatom blooms. When different species collide and form mixed aggregates this process causes interspecific interference competitio...... was tested on field data, and the predicted dynamics of a spring bloom was very similar to that observed...

Growth and proximate composition of the Chaetoceros calcitrans f. pumilus under different temperature, salinity and carbon dioxide levels

Digital Repository Service at National Institute of Oceanography (India)

Raghavan, G.; Haridevi, C; Gopinathan, C

The marine diatom Chaetoceros calcitrans f. pumilus has been examined for its potential source as live feed in aquaculture. The present study investigated eíects of temperature (20,25 and 30 degrees C), salinity (25 and 35) and carbon dioxide...

Ecology and Evolution of Diatom-Associated Cyanobacteria Through Genetic Analyses

OpenAIRE

Hilton, Jason Andrew

2014-01-01

Primary production in a large fraction of the surface ocean communities is limited by the availability of nitrogen (N). Heterocyst-forming cyanobacteria associated with diatoms of the genera Hemiaulus, Rhizosolenia, and Chaetoceros can dominate surface communities throughout the global oceans, and are an important source of N to these communities. Additionally, these unique associations are directly linked to a highly efficient carbon export system. In order to study the nature and evolution ...

Increase in nuisance blooms and geographic expansion of the freshwater diatom Didymosphenia geminata

Science.gov (United States)

Spaulding, S.A.; Elwell, E.

2007-01-01

The diatom Didymosphenia geminata (Lyngbye) Schmidt is emerging as an organism with an extraordinary capacity to impact stream ecosystems on a global scale. In recent years, streams in New Zealand, North America, Europe, and Asia have been colonized by unprecedented masses of “didymo” and its extracellular stalks (fig. 1). This diatom is able to dominate stream surfaces by covering up to 100 percent of substrate with thicknesses of greater than 20 cm, greatly altering physical and biological conditions within streams. This species is expanding its geographic range in North America and the rate that nuisance blooms are reported by the public and local media are increasing, yet little scientific investigation of the phenomenon in North America has been initiated.

Distribution and abundance of diatom species from coastal waters of Karachi, Pakistan

International Nuclear Information System (INIS)

Khokhar, F. N.; Burhan, Z.; Iqbal, P.; Abbasi, J.; Siddiqui, P.

2016-01-01

This is the first comprehensive study on the distribution and abundance of diatom species from the coastal and nearshore waters of Karachi, Pakistan, bordering northern Arabian Sea. A total of 20 genera are recorded in high abundance (Cerataulina, Chaetoceros, Coscinodiscus, Cylindrotheca, Eucampia, Guinardia, Haslea, Hemiaulus, Lauderia, Lennoxia, Leptocylindrus, Navicula, Nitzschia, Trieres, Planktoniella, Pleurosigma, Pseudo-nitzschia, Rhizosolenia, Thalassionema and Thalassiosira). The most abundant genera were observed Guinardia, Chaetoceros, Leptocylindrus, Nitzschia and Lennoxia at all stations. Manora coastal station (MI-1) had high abundance corresponding with high Chlorophyll a (130 meu gL- l) values. Minimum abundance and low chlorophyll a value (0.05μgL-l) were observed at Mubarak Village coastal station (MV-1). Diatom abundance showed significant correlation with Chlorophyll a. In present study 12 centric and 8 pennate forms were recorded and similarly high diversity of centric taxa was observed compared to pennate forms. A total of 134 species are recorded of which 40 species were observed at four stations, 31species at three stations, 23 at two stations and 40 species only at one station. The total phytoplankton and diatom peak abundance was observed during NE monsoon (winter season) associated with nutrient loading through up-sloping of nutrient rich water upwelled off of Oman during South West monsoon. Overall higher diversity was observed at Manora coastal and nearshore stations (MI-1, MI-2) indicating the influence of organic pollution loading from Layari and Malir rivers. (author)

TRIGLYCERIDE COMPOSITION OF SIXTEEN STRAINS OF MARINE DIATOM

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Lily M.G. Panggabean

2013-07-01

Full Text Available Trigliceride or triacylglicerol (TAG composition in crude oil of sixteen strain of marine diatom has been detected by spectra analyses on an Electrospray - Ion Trap – Mass Spectrometry (ESI-IT-MS HCT Bruker-Daltonic GmbH instrument with AgNO3 used as coordination ionization agent. Biomass samples of each microalga strain were taken from early and late stationary cultures in f/2 enriched seawater and algal oils were extracted according to Bligh and Dyer. Results from spectra analysis showed that P-Pt-P (C16:0-C16:1-C16:0 were distinguished in TAG from diatom strains Chaetoceros sp.1, Chaetoceros sp.2, Thalasiossira sp.1, Thalasiossira sp.2, Thalasiossira sp.3, Navicula sp. 1, Navicula sp. 2, Navicula sp. 3, Navicula sp. 4, Nitzschia sp. 2 and Amphora sp. In contrast, TAGs in Melosira sp. included P-P-P (C16:0-C16:0-C16:0 and P-P-O (C16:0-C16:0-C18:1 were identified. TAGs from Chaetoceros sp. were the most varies among samples, i.e. P-Pt-P (C16:0-C16:1-C16:0, A-P-M (C20:4-C16:0-C14:0, P-Pt-Lt (C16:0-C16:1-C18:3, P-Pt-A (C16:0-C16:1-C20:4, D-P-P (C22:6-C16:0-C16:0, A-Ln-P (C20:4-C18:2-C16:0. Various TAGs were also detected in Nitzschia sp.2, i.e. P-Pt-M (C16:0-C16:1-C14:0, P-Pt-P (C16:0-C16:1-C16:0, P-Pt-S (C16:0-C16:1-C18:0, P-Pt-A (C16:0-C16:1-C20:4. TAGs composition in Skeletonema strains that similar to those in Nitzschia sp.1 has longer carbon, i.e. P-P-O (C16:0-C16:0-C18:1, P-O-O (C16:0-C18:1-C18:1 and O-O-O (C18:1-C18:1-C18:1. TAGs with longer carbon chain and more double bond including highly unsaturated fatty acid C20:4 were increased with culture age in diatoms Chaetoceros sp.1, Chaetoceros sp.2, Thalasiossira sp.2, Navicula sp.1 and Nitzschia sp. 2.Keywords: diatom, TAG, ESI-IT-MS, f/2, early and late stationary

Phytoplankton dynamics in contrasting early stage North Atlantic spring blooms: composition, succession, and potential drivers

DEFF Research Database (Denmark)

Daniels, C.J.; Poulton, A. J.; Esposito, M.

2015-01-01

The spring bloom is a key annual event in the phenology of pelagic ecosystems, making a major contribution to the oceanic biological carbon pump through the production and export of organic carbon. However, there is little consensus as to the main drivers of spring bloom formation, exacerbated......) of the 2012 North Atlantic spring bloom. The plankton composition and characteristics of the initial stages of the bloom were markedly different between the two basins. The Iceland Basin (ICB) appeared well mixed to > 400 m, yet surface chlorophyll a (0.27–2.2 mg m–3) and primary production (0.06–0.66 mmol C...... suggest micro-zooplankton grazing, potentially coupled with the lack of a seed population of bloom forming diatoms, was restricting diatom growth in the NWB, and that large diatoms may be absent in NWB spring blooms. Despite both phytoplankton communities being in the early stages of bloom formation...

Algal blooms in Nigerian waters: an overview | Akin-Oriola | African ...

African Journals Online (AJOL)

water bodies include cyanobacteria (Microcystis spp., Oscillatoria spp., Anabaena spp. and Trichodesmium thiebautii), diatoms (Pseudo-nitzschia spp., Nitzschia spp. and Chaetoceros convolutus) and dinoflagellates (Dinophysis acuta, Gonyaulax spp., Gymnodinium spp., Noctiluca scintillans and Prorocentrum lima).

In vivo exposure to northern diatoms arrests sea urchin embryonic development.

Science.gov (United States)

Gudimova, Elena; Eilertsen, Hans C; Jørgensen, Trond Ø; Hansen, Espen

2016-01-01

There are numerous reports indicating that marine diatoms may act harmful to early developmental stages of invertebrates. It is believed that the compounds responsible for these detrimental effects are oxylipins resulting from oxidized polyunsaturated fatty acids, and that they may function as grazing deterrents. Most studies reporting these effects have exposed test organisms to diatom extracts or purified toxins, but data from in vivo exposure to intact diatoms are scarce. We have conducted sea urchin egg incubation and plutei feeding experiments to test if intact diatom cells affected sea urchin embryo development and survival. This was done by exposing the common northern sea urchins Strongylocentrotus droebachiensis and Echinus acutus to northern strains of the diatoms Chaetoceros socialis, Skeletonema marinoi, Chaetoceros furcellatus, Attheya longicornis, Thalassiosira gravida and Porosira glacialis. The intact diatom cell suspensions were found to inhibit sea urchin egg hatching and embryogenesis. S. marinoi was the most potent one as it caused acute mortality in S. droebachiensis eggs after only four hours exposure to high (50 μg/L Chla) diatom concentrations, as well as 24 h exposure to normal (20 μg/L Chla) and high diatom concentrations. The second most potent species was T. gravida that caused acute mortality after 24 h exposure to both diatom concentrations. A. longicornis was the least harmful of the diatom species in terms of embryo development arrestment, and it was the species that was most actively ingested by S. droebachiensis plutei. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

CHANGES IN CHLOROPHYLL A FLOURESCENCE AND PIGMENT RATIOS DURING DIFFERENT GROWTH PHASES OF A UNICELLULAR MARINE CHAETOCEROS (BACILLAROPHYCEAE) IN BATCH CULTURE

Science.gov (United States)

Interpretations of chlorophyll a fluorescence data are based largely on application with green algae and higher plants. This study evaluated the interpretation of fluorescence data for a unicellular marine diatom. Chaetoceros sp. was grown in 4-liter batch cultures on a 16:8, L:D...

ENVIRONMENTAL CONTROL OF STALK LENGTH IN THE BLOOM-FORMING, FRESHWATER BENTHIC DIATOM DIDYMOSPHENIA GEMINATA (BACILLARIOPHYCEAE)(1).

Science.gov (United States)

Kilroy, Cathy; Bothwell, Max

2011-10-01

Blooms of the freshwater stalked diatom Didymosphenia geminata (Lyngb.) M. Schmidt in A. Schmidt typically occur in oligotrophic, unshaded streams and rivers. Observations that proliferations comprise primarily stalk material composed of extracellular polymeric substances (EPS) led us to ask whether or not the production of excessive EPS is favored under nutrient-limited, high-light conditions. We conducted experiments in outdoor flumes colonized by D. geminata using water from the oligotrophic, D. geminata-affected Waitaki River, South Island, New Zealand, to determine the relationship between D. geminata stalk length, cell division rates, and light intensity under ambient and nutrient-enriched conditions. Stalk lengths were measured in situ, and cell division rates were estimated as the frequency of dividing cells (FDC). FDC responded positively to increasing light intensity and to nutrient additions (N+P and P). Under ambient conditions, stalk length increased as light level increased except at low ambient light levels and temperature. Nutrient enrichment resulted in decreased stalk length and negative correlations with FDC, with this effect most evident under high light. Our results are consistent with the hypothesis that extensive stalk production in D. geminata occurs when cell division rates are nutrient limited and light levels are high. Thus, photosynthetically driven EPS production in the form of stalks, under nutrient-limited conditions, may explain the development of very high biomass in this species in oligotrophic rivers. The responses of FDC and stalk length under nutrient-replete conditions are also consistent with occurrences of D. geminata as a nondominant component of mixed periphyton communities in high-nutrient streams. © 2011 Phycological Society of America.

Enhancement of the reactive iron pool by marine diatoms

NARCIS (Netherlands)

Rijkenberg, Micha J. A.; Gerringa, Loes J. A.; Timmermans, Klaas R.; Fischer, Astrid C.; Kroon, Koos J.; Buma, Anita G. J.; Wolterbeek, Bert Th.; de Baar, Hein J. W.

2008-01-01

Short term (2 days) laboratory experiments were performed to study the change in irradiance induced production of Fe(II) in seawater in the presence of two open oceanic Southern Ocean diatom species, Thalassiosira sp. and Chaetoceros brevis. Three irradiance conditions were applied: 1) UVB+UVA+VIS,

Effect of Industrial Effluent on the Growth of Marine Diatom ...

African Journals Online (AJOL)

The marine centric diatom,Chaetoceros simplex (Ostenfeld, 1901) was exposed to five different concentrations of industrial effluent for 96 hrs to investigate the effect on growth. The physico-chemical parameters viz. colour, odour, temperature, salinity, dissolved oxygen, turbidity, pH, alkalinity, hardness, ammonia, nitrite, ...

Studies on fouling diatoms from the Zuari Estuary, Goa (west coast of India)

Digital Repository Service at National Institute of Oceanography (India)

Redekar, P.D.; Wagh, A.B.

from offshore waters of Bombay High area using aluminium panels and recorded 58 species of fouling diatoms Of these Navicula Coscinodiscus Rhizosolenia and Chaetoceros were found to be common The dominance of Centrales over Pennales in water column... on fouling diatoms from the Zuari estuary, Goa (West coast of India) 119 Pangu (1993) used mild steel, aluminium, fiberglass and glass test panels and the immersion period of panels was long (1 month to 11 months) The fouling diatoms from Waghotana...

Characterisation of algal organic matter produced by bloom-forming marine and freshwater algae

KAUST Repository

Villacorte, Loreen O.

2015-04-01

Algal blooms can seriously affect the operation of water treatment processes including low pressure (micro- and ultra-filtration) and high pressure (nanofiltration and reverse osmosis) membranes mainly due to accumulation of algal-derived organic matter (AOM). In this study, the different components of AOM extracted from three common species of bloom-forming algae (Alexandrium tamarense, Chaetoceros affinis and Microcystis sp.) were characterised employing various analytical techniques, such as liquid chromatography - organic carbon detection, fluorescence spectroscopy, fourier transform infrared spectroscopy, alcian blue staining and lectin staining coupled with laser scanning microscopy to indentify its composition and force measurement using atomic force microscopy to measure its stickiness. Batch culture monitoring of the three algal species illustrated varying characteristics in terms of growth pattern, cell concentration and AOM release. The AOM produced by the three algal species comprised mainly biopolymers (e.g., polysaccharides and proteins) but some refractory compounds (e.g., humic-like substances) and other low molecular weight acid and neutral compounds were also found. Biopolymers containing fucose and sulphated functional groups were found in all AOM samples while the presence of other functional groups varied between different species. A large majority (>80%) of the acidic polysaccharide components (in terms of transparent exopolymer particles) were found in the colloidal size range (<0.4μm). The relative stickiness of AOM substantially varied between algal species and that the cohesion between AOM-coated surfaces was much stronger than the adhesion of AOM on AOM-free surfaces. Overall, the composition as well as the physico-chemical characteristics (e.g., stickiness) of AOM will likely dictate the severity of fouling in membrane systems during algal blooms.

Comparative toxicological effects of two antifouling biocides on the marine diatom Chaetoceros lorenzianus: Damage and post-exposure recovery.

Science.gov (United States)

Chavan, Pooja; Kumar, Rajesh; Kirubagaran, Ramalingam; Venugopalan, Vayalam P

2017-10-01

Antifouling biocides are commonly used in coastal electric power stations to prevent biofouling in their condenser cooling systems. However, the environmental impact of the chemical biocides is less understood than the thermal stress effects caused by the condenser effluents. In this study, Chaetoceros lorenzianus, a representative marine diatom, was used to analyse the toxicity of two antifouling biocides, chlorine and chlorine dioxide. The diatom cells were subjected to a range of concentrations of the biocides (from 0.05 to 2mg/L, as total residual oxidants, TRO) for contact time of 30min. They were analysed for viability, genotoxicity, chlorophyll a and cell density endpoints. The cells were affected at all concentrations of the biocides (0.05-2mg/L), showing dose-dependent decrease in viability and increase in DNA damage. The treated cells were later incubated in filtered seawater devoid of biocide to check for recovery. The cells were able to recover in terms of overall viability and DNA damage, when they had been initially treated with low concentrations of the biocides (0.5mg/L of Cl 2 or 0.2mg/L of ClO 2 ). Chlorophyll a analysis showed irreparable damage at all concentrations, while cell density showed increasing trend of reduction, if treated above 0.5mg/L of Cl 2 and 0.2mg/L of ClO 2 . The data indicated that in C. lorenzianus, cumulative toxic effects and recovery potential of ClO 2 up to 0.2mg/L were comparable with those of Cl 2 , up to 0.5mg/L concentration in terms of the studied endpoints. The results indicate that at the biocide levels currently being used at power stations, recovery of the organism is feasible upon return to ambient environment. Similar studies should be carried out on other planktonic and benthic organisms, which will be helpful in the formulation of future guidelines for discharge of upcoming antifouling biocides such as chlorine dioxide. Copyright © 2017 Elsevier Inc. All rights reserved.

Genotoxicity of cadmium in marine diatom Chaetoceros tenuissimus using the alkaline Comet assay

Digital Repository Service at National Institute of Oceanography (India)

Desai, S.R.; Verlecar, X.N.; Nagarajappa; Goswami, U.

of Cd increased growth of the diatom decreased. Alkaline single-cell gel electrophoresis (Comet assay) method, which is highly sensitive in detection of DNA damage in eukaryotic cells, was used to observe genomic changes in marine diatom cells. DNA...

Carbon content and C:N ratio of transparent exopolymeric particles (TEP) produced by bubbling exudates of diatoms

DEFF Research Database (Denmark)

Mari, Xavier

1999-01-01

The carbon content of transparent exopolymeric particles (TEP) was measured in the laboratory in particles produced by bubbling exudates of the diatom Thalassiosira weissflogii, grown under nitrogen non-limited conditions (N:P = 7). The carbon content of these particles (TEP-C) appears to vary...... a coastal area (Kattegat, Denmark), TEP carbon concentration in the surface mixed layer was on the order of 230 ± 150 µg C l-1. This is high relative to other sources of particulate organic carbon (e.g. phytoplankton) and depending on TEP turnover rates, suggests that TEP is an important pathway...... for dissolved organic carbon in coastal seas. The carbon to nitrogen ratio of TEP was measured from particles formed by bubbling exudates of the diatoms T. weissflogii, Skeletonema costatum, Chaetoceros neogracile and C. affinis. Each of these diatom species was grown under various N:P ratios, from N...

MF/UF rejection and fouling potential of algal organic matter from bloom-forming marine and freshwater algae

KAUST Repository

Villacorte, Loreen O.

2015-07-01

Pretreatment with microfiltration (MF) or ultrafiltration (UF) membranes has been proposed for seawater reverse osmosis (SWRO) plants to address operational issues associated with algal blooms. Here, we investigated the MF/UF rejection and fouling potential of algal organic matter (AOM) released by common species of bloom-forming marine (Alexandrium tamarense and Chaetoceros affinis) and freshwater (Microcystis sp.) algae. Batch culture monitoring of the three algal species illustrated varying growth pattern, cell concentration, AOM released and membrane fouling potential. The high membrane fouling potential of the cultures can be directly associated (R2>0.85) with AOM such as transparent exopolymer particle (TEP) while no apparent relationship with algal cell concentration was observed. The AOM comprised mainly biopolymers (e.g., polysaccharides and proteins) and low molecular weight organic compounds (e.g., humic-like substances). The former were largely rejected by MF/UF membranes while the latter were poorly rejected. MF (0.4μm and 0.1μm pore size) rejected 14%-56% of biopolymers while conventional UF (100kDa) and tight UF (10kDa) rejected up to 83% and 97%, respectively. The retention of AOM resulted in a rapid increase in trans-membrane pressure (δP) over time, characterised by pore blocking followed by cake filtration with enhanced compression as illustrated by an exponential progression of δP. © 2015 Elsevier B.V.

Effects of nutrients and zooplankton on the phytoplankton community structure in Marudu Bay

Science.gov (United States)

Tan, Kar Soon; Ransangan, Julian

2017-07-01

Current study was carried out to provide a better understanding on spatial and temporal variations in the phytoplankton community structure in Marudu Bay, an important nursery ground for fishery resources within the Tun Mustapha Marine Park and Coral Triangle Initiative, and their relationship with environmental variables. Samplings were conducted monthly from April 2014 to April 2015 in Marudu Bay, Malaysia. Water samples were collected for nutrients analysis, zooplankton and phytoplankton counting. Moreover, the in situ environmental parameters were also examined. The field study showed a total of forty seven phytoplankton genera, representative of 33 families were identified. The nutrient concentrations in Marudu Bay was low (mesotrophic) throughout the year, where the phytoplankton community was often dominated by Chaetoceros spp. and Bacteriastrum spp. In general, increase in nitrate concentration triggered the bloom of centric diatom, Chaetoceros spp. and Bacteriastrum spp. in Marudu Bay. However, the bloom of these phytoplankton taxa did not occur in the presence of high ammonia concentration. In addition, high abundance of zooplankton also a limiting factor of the phytoplankton blooms particularly at end of southwest monsoon. High silica concentration promoted the growth of pennate diatoms, Proboscia spp. and Thallassionema spp., but the depletion of silica quickly terminated the bloom. Interestingly, our study showed that Chaetoceros spp., tolerated silica depletion condition, but the average cell size of this taxon reduced significantly. In summary, the phytoplankton community structure in mesotrophic environment is more sensitive to the changes in zooplankton abundance, nutrient concentration and its ratio than that in nutrient rich environments. This study also recommends that bivalve farming at industrial scale is not recommended in Marudu Bay because it potentially depletes the primary productivity hence jeopardizing the availability of live food for

Diatom stratigraphy and long-term dissolved silica concentrations in the Baltic Sea

Science.gov (United States)

Olli, Kalle; Clarke, Annemarie; Danielsson, Åsa; Aigars, Juris; Conley, Daniel J.; Tamminen, Timo

2008-10-01

In many parts of the world coastal waters with anthropogenic eutrophication have experienced a gradual depletion of dissolved silica (DSi) stocks. This could put pressure on spring bloom diatom populations, e.g. by limiting the intensity of blooms or by causing shifts in species composition. In addition, eutrophication driven enhanced diatom growth is responsible for the redistribution of DSi from the water phase to the sediments, and changes in the growth conditions may be reflected in the sediment diatom stratigraphy. To test for changes in diatom communities we have analyzed four sediment cores from the Baltic Sea covering approximately the last 100 years. The sediment cores originate from the western Gulf of Finland, the Kattegat, the Baltic Proper and the Gulf of Riga. Three out of the four cores reveal only minor changes in composition of diatom assemblages, while the Gulf of Riga core contains major changes, occurring after the second World War. This area is set apart from the other Baltic Sea basins by a high frequency of low after spring bloom DSi concentrations (< 2 µmol L - 1 ) during a relatively well defined time period from 1991-1998. In 1991 to 1993 a rapid decline of DSi spring concentrations and winter stocks (down to 5 µmol L - 1 ) in the Gulf was preceded by exceptionally intense diatom spring blooms dominated by the heavily silicified species Thalassiosira baltica (1991-1992; up to 5.5 mg ww L - 1 ). T. baltica has been the principal spring bloom diatom in the Gulf of Riga since records began in 1975. DSi consumption and biomass yield experiments with cultured T. baltica suggest that intense blooms can potentially exhaust the DSi stock of the water column and exceed the annual Si dissolution in the Gulf of Riga. The phytoplankton time series reveals another exceptional T. baltica bloom period in 1981-1983 (up to 8 mg L - 1 ), which, however, took place before the regular DSi measurements. These periods may be reflected in the conspicuous

A comparison of biogenic iron quotas during a diatom spring bloom using multiple approaches

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A. L. King

2012-02-01

Full Text Available Biogenic Fe quotas were determined using three distinct techniques on samples collected concurrently in the subtropical Pacific Ocean east of New Zealand. Fe quotas were measured using radioisotope uptake experiments (24 h incubation, bulk filtration and analysis by inductively-coupled plasma mass spectrometer (ICPMS, and single-cell synchrotron x-ray fluorescence (SXRF analysis over a sixteen-day period (year days 263 to 278 of 2008 during a quasi-Lagrangian drifter experiment that tracked the evolution of the annual spring diatom bloom within a counter-clockwise open-ocean eddy. Overall, radioisotope uptake-determined Fe quotas (washed with oxalate reagent to remove extracellular Fe were the lowest (0.5–1.0 mmol Fe:mol P; 4–8 μmol Fe:mol C, followed by single-cell Fe quotas (2.3–7.5 mmol Fe:mol P; 17–57 μmol Fe:mol C, and the highest and most variable quotas were from the bulk filtration ICPMS approach that used the oxalate reagent wash, corrected for lithogenic Fe using Al (0.8–21 mmol Fe:mol P; 4–136 μmol Fe:mol C. During the evolution of the spring bloom within the eddy (year days 263 to 272, the surface mixed layer inventories of particulate biogenic elements (C, N, P, Si and chlorophyll increased while Fe quotas estimated from all three approaches exhibited a general decline. After the onset of the bloom decline, the drogued buoys exited the eddy center (days 273 to 277. Fe quotas returned to pre-bloom values during this part of the study. Our standardized and coordinated sampling protocols reveal the general observed trend in Fe quotas: ICPMS > SXRF > radioisotope uptake. We discuss the inherent differences between the techniques and argue that each technique has its individual merits and uniquely contributes to the characterization of the oceanic particulate Fe pool.

Phytoplankton-Associated Bacterial Community Composition and Succession during Toxic Diatom Bloom and Non-Bloom Events.

Science.gov (United States)

Sison-Mangus, Marilou P; Jiang, Sunny; Kudela, Raphael M; Mehic, Sanjin

2016-01-01

Pseudo-nitzschia blooms often occur in coastal and open ocean environments, sometimes leading to the production of the neurotoxin domoic acid that can cause severe negative impacts to higher trophic levels. Increasing evidence suggests a close relationship between phytoplankton bloom and bacterial assemblages, however, the microbial composition and succession during a bloom process is unknown. Here, we investigate the bacterial assemblages before, during and after toxic and non-toxic Pseudo-nitzschia blooms to determine the patterns of bacterial succession in a natural bloom setting. Opportunistic sampling of bacterial community profiles were determined weekly at Santa Cruz Municipal Wharf by 454 pyrosequencing and analyzed together with domoic acid levels, phytoplankton community and biomass, nutrients and temperature. We asked if the bacterial communities are similar between bloom and non-bloom events and if domoic acid or the presence of toxic algal species acts as a driving force that can significantly structure phytoplankton-associated bacterial communities. We found that bacterial diversity generally increases when Pseudo-nitzschia numbers decline. Furthermore, bacterial diversity is higher when the low-DA producing P. fraudulenta dominates the algal bloom while bacterial diversity is lower when high-DA producing P. australis dominates the algal bloom, suggesting that the presence of algal toxin can structure bacterial community. We also found bloom-related succession patterns among associated bacterial groups; Gamma-proteobacteria, were dominant during low toxic P. fraudulenta blooms comprising mostly of Vibrio spp., which increased in relative abundance (6-65%) as the bloom progresses. On the other hand, Firmicutes bacteria comprising mostly of Planococcus spp. (12-86%) dominate during high toxic P. australis blooms, with the bacterial assemblage showing the same bloom-related successional patterns in three independent bloom events. Other environmental

Phytoplankton-associated bacterial community composition and succession during toxic diatom bloom and non-bloom events

Directory of Open Access Journals (Sweden)

Marilou P. Sison-Mangus

2016-09-01

Full Text Available Pseudo-nitzschia blooms often occur in coastal and open ocean environments, sometimes leading to the production of the neurotoxin domoic acid that can cause severe negative impacts to higher trophic levels. Increasing evidence suggests a close relationship between phytoplankton bloom and bacterial assemblages, however, the microbial composition and succession during a bloom process is unknown. Here, we investigate the bacterial assemblages before, during and after toxic and non-toxic Pseudo-nitzschia blooms to determine the patterns of bacterial succession in a natural bloom setting. Opportunistic sampling of bacterial community profiles were determined weekly at Santa Cruz Municipal Wharf by 454 pyrosequencing and analyzed together with domoic acid levels, phytoplankton community and biomass, nutrients and temperature. We asked if the bacterial communities are similar between bloom and non-bloom events and if domoic acid or the presence of toxic algal species acts as a driving force that can significantly structure phytoplankton-associated bacterial communities. We found that bacterial diversity generally increases when Pseudo-nitzschia numbers decline. Furthermore, bacterial diversity is higher when the low-DA producing P. fraudulenta dominates the algal bloom while bacterial diversity is lower when high-DA producing P. australis dominates the algal bloom, suggesting that the presence of algal toxin can structure bacterial community. We also found bloom-related succession patterns among associated bacterial groups; Gamma-proteobacteria, were dominant during low toxic P. fraudulenta blooms comprising mostly of Vibrio spp., which increased in relative abundance (6%-65% as the bloom progresses. On the other hand, Firmicutes bacteria comprising mostly of Planococcus spp. (12%- 86% dominate during high toxic P. australis blooms, with the bacterial assemblage showing the same bloom-related successional patterns in 3 independent bloom events. Other

Kinetic control on Zn isotope signatures recorded in marine diatoms

Science.gov (United States)

Köbberich, Michael; Vance, Derek

2017-08-01

Marine diatoms dominate the oceanic cycle of the essential micronutrient zinc (Zn). The stable isotopes of zinc and other metals are increasingly used to understand trace metal micronutrient cycling in the oceans. One clear feature of the early isotope data is the heavy Zn isotope signature of the average oceanic dissolved pool relative to the inputs, potentially driven by uptake of light isotopes into phytoplankton cells and export to sediments. However, despite the fact that diatoms strip Zn from surface waters across the Antarctic polar front in the Southern Ocean, the local upper ocean is not isotopically heavy. Here we use culturing experiments to quantify the extent of Zn isotope fractionation by diatoms and to elucidate the mechanisms driving it. We have cultured two different open-ocean diatom species (T. oceanica and Chaetoceros sp.) in a series of experiments at constant medium Zn concentration but at bioavailable medium Fe ranging from limiting to replete. We find that T. oceanica can maintain high growth rates and Zn uptake rates over the full range of bioavailable iron (Fe) investigated, and that the Zn taken up has a δ66Zn that is unfractionated relative to that of the bioavailable free Zn in the medium. The studied representative of the genus Chaetoceros, on the other hand, shows more significantly reduced Zn uptake rates at low Fe and records more variable biomass δ66Zn signatures, of up to 0.85‰ heavier than the medium. We interpret the preferential uptake of heavy isotopes at extremely low Zn uptake rates as potentially due to either of the following two mechanisms. First, the release of extracellular polymeric substances (EPS), at low Fe levels, may preferentially scavenge heavy Zn isotopes. Second, the Zn uptake rate may be slow enough to establish pseudo-equilibrium conditions at the transporter site, with heavy Zn isotopes forming more stable surface complexes. Thus we find that, in our experiments, Fe-limitation exerts a key control that

Hundred years of genetic structure in a sediment revived diatom population

DEFF Research Database (Denmark)

Haernstroem, Karolina; Ellegaard, Marianne; Andersen, Thorbjørn Joest

2011-01-01

This paper presents research on the genetic structure and diversity of populations of a common marine protist and their changes over time. The bloom-forming diatom Skeletonema marinoi was used as a model organism. Strains were revived from anoxic discrete layers of a 210Pb-dated sediment core...

Potentially harmful microalgae and algal blooms in a eutrophic estuary in Turkey

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S. TAS

2015-07-01

Full Text Available Distribution of potentially harmful microalgae and algal blooms were investigated at monthly and weekly time scales between October 2009 and September 2010 in the Golden Horn, a eutrophic estuary in the Sea of Marmara (Turkey. Several physical and chemical parameters were analysed together with phytoplankton composition and abundance. A total number of 23 potentially harmful and/or bloom-forming microalgae (14 dinoflagellates, 4 diatoms and 5 phytoflagellates were identified throughout this study period, of which nine taxa have been confirmed to be toxic elsewhere in the world. Most harmful species and algal blooms were observed in late spring and summer particularly in the middle and upper estuaries, and nine taxa formed dense and successive algal blooms causing water discoloration. Nutrient concentrations increased significantly from the lower to the upper estuary. Additionally, high organic matter loads in the upper estuary could also have benefited by mixotrophic species. The increasing number of potentially harmful and bloom-forming species and algal blooms indicated that the GHE is a potential risk area for future HABs.

Response of the Ubiquitous Pelagic Diatom Thalassiosira weissflogii i>to Darkness and Anoxia

DEFF Research Database (Denmark)

Kamp, Anja; Stief, Peter; Knappe, Jan

2013-01-01

Thalassiosira weissflogii, an abundant, nitrate-storing, bloom-forming diatom in the world's oceans, can use its intracellular nitrate pool for dissimilatory nitrate reduction to ammonium (DNRA) after sudden shifts to darkness and anoxia, most likely as a survival mechanism. T. weissflogii cells ...

Metabolite Profiling of the Microalgal Diatom Chaetoceros Calcitrans and Correlation with Antioxidant and Nitric Oxide Inhibitory Activities via 1H NMR-Based Metabolomics

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Awanis Azizan

2018-05-01

Full Text Available Microalgae are promising candidate resources from marine ecology for health-improving effects. Metabolite profiling of the microalgal diatom, Chaetoceros calcitrans was conducted by using robust metabolomics tools, namely 1H nuclear magnetic resonance (NMR spectroscopy coupled with multivariate data analysis (MVDA. The unsupervised data analysis, using principal component analysis (PCA, resolved the five types of extracts made by solvents ranging from polar to non-polar into five different clusters. Collectively, with various extraction solvents, 11 amino acids, cholesterol, 6 fatty acids, 2 sugars, 1 osmolyte, 6 carotenoids and 2 chlorophyll pigments were identified. The fatty acids and both carotenoid pigments as well as chlorophyll, were observed in the extracts made from medium polar (acetone, chloroform and non-polar (hexane solvents. It is suggested that the compounds were the characteristic markers that influenced the separation between the clusters. Based on partial least square (PLS analysis, fucoxanthin, astaxanthin, violaxanthin, zeaxanthin, canthaxanthin, and lutein displayed strong correlation to 2,2-diphenyl-1-picrylhydrazyl (DPPH free radical scavenging and nitric oxide (NO inhibitory activity. This metabolomics study showed that solvent extractions are one of the main bottlenecks for the maximum recovery of bioactive microalgal compounds and could be a better source of natural antioxidants due to a high value of metabolites.

Optical detection of Prorocentrum donghaiense blooms based on multispectral reflectance

Institute of Scientific and Technical Information of China (English)

TAO Bangyi; PAN Delu; MAO Zhihua; SHEN Yuzhang; ZHU Qiankun; CHEN Jianyu

2013-01-01

Prorocentrum donghaiense is one of the most common red tide causative dinoflagellates in the Changjiang (Yangtze) River Estuary and the adjacent area of the East China Sea. It causes large-scale blooms in late spring and early summer that lead to widespread ecologic and economic damage. A means for distinguish-ing dinoflagellate blooms from diatom (Skeletonema costatum) blooms is desired. On the basis of measure-ments of remote sensing reflectance [Rrs(λ)] and inherent optical parameters, the potential of using a mul-tispectral approach is assessed for discriminating the algal blooms due to P. donghaiense from those due to S. costatum. The behavior of two reflectance ratios [R1 =Rrs(560)/Rrs(532) and R2 =Rrs(708)/Rrs(665)], suggests that differentiation of P. donghaiense blooms from diatom bloom types is possible from the current band setup of ocean color sensors. It is found that there are two reflectance ratio regimes that indicate a bloom is dominated by P. donghaiense: (1) R1 >1.55 and R2 1.75 and R2 ?1.0. Various sensitivity analyses are conducted to investigate the effects of the variation in varying levels of chlorophyll concentration and colored dissolved organic matter (CDOM) as well as changes in the backscattering ratio (bbp/bp) on the efficacy of this multispectral approach. Results indicate that the intensity and inherent op-tical properties of the algal species explain much of the behavior of the two ratios. Although backscattering influences the amplitude of Rrs(λ), especially in the 530 and 560 nm bands, the discrimination between P. donghaiense and diatoms is not significantly affected by the variation of bbp/bp. Since a CDOM(440) in coastal areas of the ECS is typically lower than 1.0 m−1 in most situations, the presence of CDOM does not interfere with this discrimination, even as SCDOM varies from 0.01 to 0.026 nm−1. Despite all of these effects, the dis-crimination of P. donghaiense blooms from diatom blooms based on multispectral

Architecture and material properties of diatom shells provide effective mechanical protection

Science.gov (United States)

Hamm, Christian E.; Merkel, Rudolf; Springer, Olaf; Jurkojc, Piotr; Maier, Christian; Prechtel, Kathrin; Smetacek, Victor

2003-02-01

Diatoms are the major contributors to phytoplankton blooms in lakes and in the sea and hence are central in aquatic ecosystems and the global carbon cycle. All free-living diatoms differ from other phytoplankton groups in having silicified cell walls in the form of two `shells' (the frustule) of manifold shape and intricate architecture whose function and role, if any, in contributing to the evolutionary success of diatoms is under debate. We explored the defence potential of the frustules as armour against predators by measuring their strength. Real and virtual loading tests (using calibrated glass microneedles and finite element analysis) were performed on centric and pennate diatom cells. Here we show that the frustules are remarkably strong by virtue of their architecture and the material properties of the diatom silica. We conclude that diatom frustules have evolved as mechanical protection for the cells because exceptional force is required to break them. The evolutionary arms race between diatoms and their specialized predators will have had considerable influence in structuring pelagic food webs and biogeochemical cycles.

PENGARUH PAKAN ALAMI Chaetoceros spp. TERHADAP PERKEMBANGAN DAN SINTASAN LARVA UDANG WINDU, Penaeus monodon

Directory of Open Access Journals (Sweden)

Samuel Lante

2015-09-01

Full Text Available Pakan alami berupa mikroalga merupakan salah satu faktor pendukung dalam keberhasilan usaha pembenihan udang windu, Penaeus monodon. Penelitian ini bertujuan untuk mengetahui jenis pakan alami, Chaetoceros spp., yang dapat meningkatkan pertumbuhan dan sintasan larva udang windu. Penelitian ini menggunakan 15 buah bak fiber berukuran 60 cm x 40 cm x 50 cm dengan volume 120 liter yang disi air sebanyak 100 liter. Kepadatan naupli adalah 90 ekor/liter atau 9.000 ekor/bak dan lima jenis pakan alami Chaetoceros spp. yang diuji yaitu: Chaetoceros simplex, Chaetoceros ceratosporum, Chaetoceros calcitrans, Chaetoceros amami, dan Chaetoceros gracilis. Hasil penelitian menunjukkan bahwa aplikasi kelima jenis pakan alami memberikan laju perkembangan larva yang relatif sama sampai stadia PL-1. Aplikasi Chaetoceros gracilis memberikan sintasan larva udang windu tertinggi yaitu 41,48% dan dengan Chaetoceros simplex memberikan sintasan larva terendah (28,02%. Hasil penelitian ini mengindikasikan bahwa aplikasi Chaetoceros spp. yang berbeda pada pemeliharaan larva berpengaruh terhadap sintasan larva udang windu, namun tidak berpengaruh terhadap laju metamorfosis larva. Aplikasi Chaetoceros gracilis sebagai pakan alami adalah terbaik untuk sintasan larva udang windu.

Response of phytoplankton and enhanced biogeochemical activity to an episodic typhoon event in the coastal waters of Japan

Science.gov (United States)

Tsuchiya, Kenji; Kuwahara, Victor S.; Yoshiki, Tomoko M.; Nakajima, Ryota; Shimode, Shinji; Kikuchi, Tomohiko; Toda, Tatsuki

2017-07-01

Daily field surveys were conducted at a coastal-shelf station in Sagami Bay, Japan after the passage of typhoon Malou in 2010 to evaluate the after-effect of a typhoon passage on the physical-chemical environment, phytoplankton bloom formation and microbial processes within and below the euphotic layer. The passage of Malou induced an abrupt decrease in salinity and increased loading of nutrients to the euphotic layer. Dinoflagellates dominated the phytoplankton community at the surface, whereas diatoms dominated below the surface just after the passage of Malou. Four days later, the dominant dinoflagellate taxa at the surface changed from Protoperidinium spp. to Prorocentrum spp. and Ceratium spp., indicating a dinoflagellate community succession from heterotrophic to autotrophic functional groups. Five days after passage, the dominant phytoplankton taxa shifted from dinoflagellates to diatom groups of Chaetoceros spp. and Cerataulina spp. throughout the water column. Below the euphotic layer, there were increases in diatom frustules, mainly composed of Chaetoceros spp. and Cerataulina spp., bacterial abundance and NH4+ concentrations. Diatom carbon biomass contributed to approximately half of particulate organic carbon (POC) below the euphotic layer, suggesting a significant contribution of diatoms to POC sinking flux after the passage of a typhoon. Bacterial abundance was positively correlated to both phaeopigment concentrations (p affect biogeochemical activities within and below the euphotic layer in temperate coastal waters.

Phenotypic plasticity of southern ocean diatoms: key to success in the sea ice habitat?

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Olivia Sackett

Full Text Available Diatoms are the primary source of nutrition and energy for the Southern Ocean ecosystem. Microalgae, including diatoms, synthesise biological macromolecules such as lipids, proteins and carbohydrates for growth, reproduction and acclimation to prevailing environmental conditions. Here we show that three key species of Southern Ocean diatom (Fragilariopsis cylindrus, Chaetoceros simplex and Pseudo-nitzschia subcurvata exhibited phenotypic plasticity in response to salinity and temperature regimes experienced during the seasonal formation and decay of sea ice. The degree of phenotypic plasticity, in terms of changes in macromolecular composition, was highly species-specific and consistent with each species' known distribution and abundance throughout sea ice, meltwater and pelagic habitats, suggesting that phenotypic plasticity may have been selected for by the extreme variability of the polar marine environment. We argue that changes in diatom macromolecular composition and shifts in species dominance in response to a changing climate have the potential to alter nutrient and energy fluxes throughout the Southern Ocean ecosystem.

Characteristics of picoplankton abundances during a Thalassiosira diporocyclus bloom in the Taiwan Bank in late winter.

Science.gov (United States)

Jiang, Xin; Li, Jiajun; Ke, Zhixin; Xiang, Chenhui; Tan, Yehui; Huang, Liangmin

2017-04-15

To understand the variations of picoplankton (Prochlorococcus, Synechococcus, picoeukaryotes, and heterotrophic bacteria) abundances during diatom bloom, the distribution of picoplankton in the Taiwan Bank, South China Sea was investigated using flow cytometry during a Thalassiosira diporocyclus bloom in March 2016. The results indicated an abrupt abundance decrease for Prochlorococcus, Synechococcus, and picoeukaryotes within the bloom area while the abundance of heterotrophic bacteria showed no significant difference between the bloom and non-bloom areas. We found two sub-groups of heterotrophic bacteria: high- and low-nucleic acid content (HNA and LNA) bacteria with HNA dominated in the bloom area whereas LNA dominated in the non-bloom area. Among the picoplankton components, HNA represented the highest (61.1%) carbon biomass in the bloom area while picoeukaryotes represented the highest (37.6%) in the non-bloom area. Our findings implied that heterotrophic bacteria, especially HNA, played an essential role during the diatom bloom. Copyright © 2017 Elsevier Ltd. All rights reserved.

Inhibition of photosynthesis in the microalga Chaetoceros curvisetus (Bacillariophyta) by macroalga Gracilaria lemaneiformis (Rhodophyta)

Science.gov (United States)

Ye, Changpeng; Zhang, Mengcheng; Yang, Yufeng

2013-11-01

We investigated the effects of dried macroalga Gracilaria lemaneiformis (Rhodophyta) on photosynthesis of the bloom-forming microalga Chaetoceros curvisetus. C. curvisetus was cultured with different amounts of dried G. lemaneiformis under controlled laboratory conditions. We measured the photosynthetic oxygen evolution rate and established the chlorophyll a fluorescence transient (OJIP) curve coupled with its specific parameters. We observed concentration-dependent and time-dependent relationships between dried G. lemaneiformis and inhibition of photosynthesis in C. curvisetus. Co-culture with dried G. lemaneiformis also resulted in a decrease in the light-saturated maximum photosynthetic oxygen evolution rate ( P max) in C. curvisetus, and a decrease in the OJIP curve along with its specific parameters; the maximum photochemical efficiency of PSII ( F v / F m), the amount of active PSII reaction centers per excited cross section at t=0 and t= t FM (RC/CS0 and RC/CSm, respectively), the absorption flux per excited cross section at t =0 (ABS/ CS0), and the efficiency with which a trapped exciton moves an electron into the electron transport chain ( ψ 0). The dark respiration rate ( R d) increased in C. curvisetus co-cultured with dried G. lemaneiformis. The JIP-test and the oxygen evolution results indicated that dried G. lemaneiformis decreased the number of active reaction centers, blocked the electron transport chain, and damaged the oxygen-evolving complex of C. curvisetus. This result indicated that dried fragments of G. lemaneiformis could effectively inhibit photosynthesis of C. curvisetus, and thus, could serve as a functional product to control and mitigate C. curvisetus blooms.

Evaluation of fatty acids as biomarkers for a natural plankton community. A field study of a spring bloom and a post-bloom period off West Greenland

DEFF Research Database (Denmark)

Reuss, N.; Poulsen, Louise K.

2002-01-01

community were taken at the depth of fluorescence maximum. High biomass and diatom dominance during the spring bloom and low biomass and flagellate dominance in the post-bloom period were reflected by the fatty acid profiles. The total amount of fatty acid ranged from 55 to 132 mug 1(-1) during the spring...

Nitrogen utilization during spring phytoplankton bloom development in the southeast Bering Sea

International Nuclear Information System (INIS)

Sambrotto, R.N.

1983-01-01

Interactions beween a high latitude, continental shelf, spring phytoplankton bloom and water column physics and chemistry were studied using 15 N measured rates of nitrogen uptake. Peak bloom conditions commenced when the mixed layer shallowed and minimized respirational losses. Integrative light-mixing growth models were accurate during early bloom stages. An advection-diffusion model associated peak bloom nitrate uptake with pycnocline mixing rates of 2.1 m d -1 in an 18 m mixed layer. Maximum nitrogen specific uptake rates (hr -1 ), unlike those of carbon, coincided with peak bloom conditions. Although species compositions among peak bloom periods were similar, particulate C/N ratios were not. Apparently, both intercellular factors and prevailing mixing conditions influence specific uptake rates and cell composition. A large proportion of new (nitrate) to total productivity was associated with the dominance of the early bloom forming diatoms in the mixed layer. In the absence of these net plankton the residual nanoplankton dominated community exhibited a greater dependence on regenerated nitrogen. Nitrate uptake averaged 700 mg-at m -2 during the spring bloom and 1 g-at m -2 year -1 . The yearly f factor was 0.40. Nitrogen uptake based carbon productivity was 188 g C m -2 year -1

Didymosphenia geminata: Algal blooms in oligotrophic streams and rivers

Science.gov (United States)

Sundareshwar, P. V.; Upadhayay, S.; Abessa, M.; Honomichl, S.; Berdanier, B.; Spaulding, S. A.; Sandvik, C.; Trennepohl, A.

2011-05-01

In recent decades, the diatom Didymosphenia geminata has emerged as nuisance species in river systems around the world. This periphytic alga forms large “blooms” in temperate streams, presenting a counterintuitive result: the blooms occur primarily in oligotrophic streams and rivers, where phosphorus (P) availability typically limits primary production. The goal of this study is to examine how high algal biomass is formed under low P conditions. We reveal a biogeochemical process by which D. geminata mats concentrate P from flowing waters. First, the mucopolysaccaride stalks of D. geminata adsorb both iron (Fe) and P. Second, enzymatic and bacterial processes interact with Fe to increase the biological availability of P. We propose that a positive feedback between total stalk biomass and high growth rate is created, which results in abundant P for cell division. The affinity of stalks for Fe in association with iron-phosphorus biogeochemistry suggest a resolution to the paradox of algal blooms in oliogotrophic streams and rivers.

Thick-shelled, grazer-protected diatoms decouple ocean carbon and silicon cycles in the iron-limited Antarctic Circumpolar Current

Science.gov (United States)

Assmy, Philipp; Smetacek, Victor; Montresor, Marina; Klaas, Christine; Henjes, Joachim; Strass, Volker H.; Arrieta, Jesús M.; Bathmann, Ulrich; Berg, Gry M.; Breitbarth, Eike; Cisewski, Boris; Friedrichs, Lars; Fuchs, Nike; Herndl, Gerhard J.; Jansen, Sandra; Krägefsky, Sören; Latasa, Mikel; Peeken, Ilka; Röttgers, Rüdiger; Scharek, Renate; Schüller, Susanne E.; Steigenberger, Sebastian; Webb, Adrian; Wolf-Gladrow, Dieter

2013-01-01

Diatoms of the iron-replete continental margins and North Atlantic are key exporters of organic carbon. In contrast, diatoms of the iron-limited Antarctic Circumpolar Current sequester silicon, but comparatively little carbon, in the underlying deep ocean and sediments. Because the Southern Ocean is the major hub of oceanic nutrient distribution, selective silicon sequestration there limits diatom blooms elsewhere and consequently the biotic carbon sequestration potential of the entire ocean. We investigated this paradox in an in situ iron fertilization experiment by comparing accumulation and sinking of diatom populations inside and outside the iron-fertilized patch over 5 wk. A bloom comprising various thin- and thick-shelled diatom species developed inside the patch despite the presence of large grazer populations. After the third week, most of the thinner-shelled diatom species underwent mass mortality, formed large, mucous aggregates, and sank out en masse (carbon sinkers). In contrast, thicker-shelled species, in particular Fragilariopsis kerguelensis, persisted in the surface layers, sank mainly empty shells continuously, and reduced silicate concentrations to similar levels both inside and outside the patch (silica sinkers). These patterns imply that thick-shelled, hence grazer-protected, diatom species evolved in response to heavy copepod grazing pressure in the presence of an abundant silicate supply. The ecology of these silica-sinking species decouples silicon and carbon cycles in the iron-limited Southern Ocean, whereas carbon-sinking species, when stimulated by iron fertilization, export more carbon per silicon. Our results suggest that large-scale iron fertilization of the silicate-rich Southern Ocean will not change silicon sequestration but will add carbon to the sinking silica flux. PMID:24248337

Insights into global diatom distribution and diversity in the world’s ocean

KAUST Repository

Malviya, Shruti; Scalco, Eleonora; Audic, Sté phane; Vincent, Flora; Veluchamy, Alaguraj; Poulain, Julie; Wincker, Patrick; Iudicone, Daniele; de Vargas, Colomban; Bittner, Lucie; Zingone, Adriana; Bowler, Chris

2016-01-01

Diatoms (Bacillariophyta) constitute one of the most diverse and ecologically important groups of phytoplankton. They are considered to be particularly important in nutrient-rich coastal ecosystems and at high latitudes, but considerably less so in the oligotrophic open ocean. The Tara Oceans circumnavigation collected samples from a wide range of oceanic regions using a standardized sampling procedure. Here, a total of ∼12 million diatom V9-18S ribosomal DNA (rDNA) ribotypes, derived from 293 sizefractionated plankton communities collected at 46 sampling sites across the global ocean euphotic zone, have been analyzed to explore diatom global diversity and community composition. We provide a new estimate of diversity of marine planktonic diatoms at 4,748 operational taxonomic units (OTUs). Based on the total assigned ribotypes, Chaetoceros was the most abundant and diverse genus, followed by Fragilariopsis, Thalassiosira, and Corethron. We found only a few cosmopolitan ribotypes displaying an even distribution across stations and high abundance, many of which could not be assigned with confidence to any known genus. Three distinct communities from South Pacific, Mediterranean, and Southern Ocean waters were identified that share a substantial percentage of ribotypes within them. Sudden drops in diversity were observed at Cape Agulhas, which separates the Indian and Atlantic Oceans, and across the Drake Passage between the Atlantic and Southern Oceans, indicating the importance of these ocean circulation choke points in constraining diatom distribution and diversity. We also observed high diatom diversity in the open ocean, suggesting that diatoms may be more relevant in these oceanic systems than generally considered.

Insights into global diatom distribution and diversity in the world’s ocean

KAUST Repository

Malviya, Shruti

2016-03-01

Diatoms (Bacillariophyta) constitute one of the most diverse and ecologically important groups of phytoplankton. They are considered to be particularly important in nutrient-rich coastal ecosystems and at high latitudes, but considerably less so in the oligotrophic open ocean. The Tara Oceans circumnavigation collected samples from a wide range of oceanic regions using a standardized sampling procedure. Here, a total of ∼12 million diatom V9-18S ribosomal DNA (rDNA) ribotypes, derived from 293 sizefractionated plankton communities collected at 46 sampling sites across the global ocean euphotic zone, have been analyzed to explore diatom global diversity and community composition. We provide a new estimate of diversity of marine planktonic diatoms at 4,748 operational taxonomic units (OTUs). Based on the total assigned ribotypes, Chaetoceros was the most abundant and diverse genus, followed by Fragilariopsis, Thalassiosira, and Corethron. We found only a few cosmopolitan ribotypes displaying an even distribution across stations and high abundance, many of which could not be assigned with confidence to any known genus. Three distinct communities from South Pacific, Mediterranean, and Southern Ocean waters were identified that share a substantial percentage of ribotypes within them. Sudden drops in diversity were observed at Cape Agulhas, which separates the Indian and Atlantic Oceans, and across the Drake Passage between the Atlantic and Southern Oceans, indicating the importance of these ocean circulation choke points in constraining diatom distribution and diversity. We also observed high diatom diversity in the open ocean, suggesting that diatoms may be more relevant in these oceanic systems than generally considered.

Biogenic silica dissolution in diatom aggregates: insights from reactive transport modelling

KAUST Repository

Moriceau, B

2014-12-15

© Inter-Research 2014. Diatom aggregates contribute significantly to the vertical sinking flux of particulate matter in the ocean. These fragile structures form a specific microhabitat for the aggregated cells, but their internal chemical and physical characteristics remain largely unknown. Studies on the impact of aggregation on the Si cycle led to apparent inconsistency. Despite a lower biogenic silica (bSiO2) dissolution rate and diffusion of the silicic acid (dSi) being similar in aggregates and in sea-water, dSi surprisingly accumulates in aggregates. A reaction-diffusion model helps to clarify this incoherence by reconstructing dSi accumulation measured during batch experiments with aggregated and non-aggregated Skeletonema marinoi and Chaetoceros decipiens. The model calculates the effective bSiO2 dissolution rate as opposed to the experimental apparent bSiO2 dissolution rate, which is the results of the effective dissolution of bSiO2 and transport of dSi out of the aggregate. In the model, dSi transport out of the aggregate is modulated by alternatively considering retention (decrease of the dSi diffusion constant) and adsorption (reversible chemical bonds between dSi and the aggregate matrix) processes. Modelled bSiO2 dissolution is modulated by the impact of dSi concentration inside aggregates and diatom viability, as enhanced persistence of metabolically active diatoms has been observed in aggregates. Adsorption better explains dSi accumulation within and outside aggregates, raising the possible importance of dSi travelling within aggregates to the deep sea (potentially representing 20% of the total silica flux). The model indicates that bSiO2 dissolution is effectively decreased in aggregates mainly due to higher diatom viability but also to other parameters discussed herein.

Distribution of calcifying and silicifying phytoplankton in relation to environmental and biogeochemical parameters during the late stages of the 2005 North East Atlantic Spring Bloom

Directory of Open Access Journals (Sweden)

K. Leblanc

2009-10-01

Full Text Available The late stage of the North East Atlantic (NEA spring bloom was investigated during June 2005 along a transect section from 45 to 66° N between 15 and 20° W in order to characterize the contribution of siliceous and calcareous phytoplankton groups and describe their distribution in relation to environmental factors. We measured several biogeochemical parameters such as nutrients, surface trace metals, algal pigments, biogenic silica (BSi, particulate inorganic carbon (PIC or calcium carbonate, particulate organic carbon, nitrogen and phosphorus (POC, PON and POP, respectively, as well as transparent exopolymer particles (TEP. Results were compared with other studies undertaken in this area since the JGOFS NABE program. Characteristics of the spring bloom generally agreed well with the accepted scenario for the development of the autotrophic community. The NEA seasonal diatom bloom was in the late stages when we sampled the area and diatoms were constrained to the northern part of our transect, over the Icelandic Basin (IB and Icelandic Shelf (IS. Coccolithophores dominated the phytoplankton community, with a large distribution over the Rockall-Hatton Plateau (RHP and IB. The Porcupine Abyssal Plain (PAP region at the southern end of our transect was the region with the lowest biomass, as demonstrated by very low Chla concentrations and a community dominated by picophytoplankton. Early depletion of dissolved silicic acid (DSi and increased stratification of the surface layer most likely triggered the end of the diatom bloom, leading to coccolithophore dominance. The chronic Si deficiency observed in the NEA could be linked to moderate Fe limitation, which increases the efficiency of the Si pump. TEP closely mirrored the distribution of both biogenic silica at depth and prymnesiophytes in the surface layer suggesting the sedimentation of the diatom bloom in the form of aggregates, but the relative contribution of diatoms and

Using ATTO dyes to probe bacterial interactions with the marine diatom Pseudo-nitzschia.

Science.gov (United States)

Mehic, S.; Sison-Mangus, M.

2016-02-01

Pseudo-nitzschia blooms are known to be highly toxic and detrimental to wildlife. The neurotoxin produced by the algae can ripple through the entire food web creating a direct impact on oceanic life and human-related industries. With coastal blooms increasing in both size and duration in recent years, it is crucial that we uncover more microbial interactions that may affect the toxicity of these blooms. Current harmful algal bloom studies have shown that different bacterial consortia can have a great impact Pseudo-nitzschia physiology. More specifically, research suggests that bacteria affect both growth rates and domoic acid concentrations of laboratory grown cultures. However, these studies do not explore the attachment patterns of these bacteria with the diatom. Bacterial attachment may dictate the different types of interactions between bacteria and the diatoms, a trait that is largely unexplored in the symbiotic interactions between the two organisms. In this study, we seek to identify direct and indirect interactions between four bacteria taxa from different phyla and three different species of Pseudo-nitzschia. Our preliminary scanning electron microscopy and DAPI staining experiments hint at distinct differences in attachment among bacterial taxa. To explore this work further, we aim to employ ATTO dyes and epifluorescent microscopy on both binary and multiple cultures to visualize patterns in attachment. By utilizing ATTO dyes with distinct wavelength emissions, we can perform a series experiment that highlights the interaction between bacteria and diatoms, without inserting a fluorescent reporter gene in the bacteria. Multiple cultures will be used to identify possible cooperative or negative interactive traits between bacteria that can affect diatom host physiology. Implications on both phytoplankton physiology and nutrient cycling will be subsequently discussed.

Cu toxicity on growth and chlorophyll-a of Chaetoceros sp.

Science.gov (United States)

Puspitasari, R.; Suratno; Purbonegoro, T.; Agustin, A. T.

2018-02-01

Phytoplankton is a primary producer in marine aquatic ecosystem. Their sensitivity to metal makes them important to study to predict the environmental impact of pollution. Copper is an essential nutrient for aquatic life as micronutrients on an organism but toxic at high levels. The focus of this study was to assess the toxicity of copper to Chaetoceros sp. on growth and chlorophyll-a content. The result shows that inhibition concentration (IC50) of copper on the microalgae, Chaetoceros sp. was 30.25 μg L-1. Growth of Chaetoceros sp. decreased 16.84% in 16 μg L-1 and 81.97% in 44 μg L-1. Chlorophyll-a content decreased dramatically at 44 μg L-1 compared to control. Increase of the cell size, deformation of cell wall and loss of setae were observed at higher concentration of copper.

Bacterial and protist community changes during a phytoplankton bloom

KAUST Repository

Pearman, John K.; Casas, Laura; Merle, Tony; Michell, Craig; Irigoien, Xabier

2015-01-01

)] as well as a control. This approach allowed us to discriminate the changes in species composition across a broad range of phylogenetic groups using a common taxonomic level. Diatoms dominated the bloom in the NPSc treatment while dinoflagellates were

Aggregation and sedimentation processes during a spring phytoplankton bloom: A field experiment to test coagulation theory

DEFF Research Database (Denmark)

Kiørboe, Thomas; Lundsgaard, Claus; Olesen, Michael

1994-01-01

Spring diatom blooms in temperate waters are often terminated by aggregation of the cells into large floes and subsequent mass sedimentation of the phytoplankton to the sea floor. The rate of aggregate formation by physical coagulation depends on the concentration of suspended particles, on the t......Spring diatom blooms in temperate waters are often terminated by aggregation of the cells into large floes and subsequent mass sedimentation of the phytoplankton to the sea floor. The rate of aggregate formation by physical coagulation depends on the concentration of suspended particles...

Transformation techniques for metabolic engineering of diatoms and haptophytes: current state and prospects.

Science.gov (United States)

Velmurugan, Natarajan; Deka, Deepi

2018-05-01

Diatoms and haptophytes represent a key segment of the dominant phytoplankton communities that frequently form massive blooms in the photic zone of the ocean and are considered indicators of global climate changes. Diatoms and haptophytes also play a vital role in the biological carbon fixation in the carbon cycles. Carbon partitioning within diatoms and haptophytes possesses a wide range of chemical compounds and storage materials, such as lipids, carbohydrates, and chlorophyll. Among the marine microorganisms, diatoms and haptophytes have been recognized as promising sources of long- and very long-chain polyunsaturated fatty acids (PUFA). So far, a variety of approaches have been employed for genetic modification in the nuclei of diatoms and haptophytes. Studies on transformation and metabolic engineering in various intracellular genomes, such as chloroplast and mitochondria, are scarce. Particle bombardment, Agrobacterium and PEG-mediated gene transfer, and electroporation have been reported for foreign gene transformation into the diatoms and haptophytes. Antibiotics (G418 and chloramphenicol) and herbicides (zeocin, hygromycin, and norflurazon) have been successfully demonstrated as the best selection markers. Despite the availability of a wide range of molecular tools for foreign gene expression in microalgae, very few promoters (lhcf1, nr, h4, ef2, fcp, and pds) have been reported for diatoms and haptophytes. Therefore, in this review, we first summarize the significant progress that has been achieved in transgene expression in diatoms and haptophytes and highlight the importance and availability of recently developed novel tools that are suitable for transgenic expression in diatoms and haptophytes.

Succession and fate of the spring diatom bloom in Disko Bay, western Greenland

DEFF Research Database (Denmark)

Dünweber, Michael; Swalethorp, Rasmus; Kjellerup, Sanne

2010-01-01

Phytoplankton and copepod succession was investigated in Disko Bay, western Greenland from February to July 2008. The spring phytoplankton bloom developed immediately after the breakup of sea ice and reached a peak concentration of 24 mg chl a m–3 2 wk later. The bloom was analyzed during 3 phases...... from the initiation of the bloom but only had a small grazing impact on the phytoplankton. Consequently, there was a close coupling between the spring phytoplankton bloom and sedimentation of particulate organic carbon (POC). Out of 1836 ± 180 mg C m–2 d–1 leaving the upper 50 m, 60% was phytoplankton...... and fate of the phytoplankton spring bloom was controlled by nitrogen limitation and subsequent sedimentation, while grazing-mediated flux by the Calanus-dominated copepod community played a minor role in the termination of the spring bloom of Disko Bay....

Spatio-temporal distribution of the dominant Diatom and Dinoflagellate species in the Bay of Tunis (SW Mediterranean Sea

Directory of Open Access Journals (Sweden)

O. DALY YAHIA-KEFI

2005-06-01

Full Text Available Microphytoplankton composition and its relationships with hydrology and nutrient distributions were investigated over 24 months (December 1993 - November 1995 in the Bay of Tunis ( SW Mediterranean Sea. A new index, the ‘Specific Preference Index’ (SPI obtained by computing the median value of each parameter weighed by the numerical value of each species density was developed. Using this index, the relationships between each species and temperature, salinity and major nutrients were analysed. The distribution of chlorophyll a did not show a clear correlation with microplankton abundance suggesting that other factors contribute to chlorophyll concentration, such as smaller phytoplankton size fractions or detritus. The winter-spring diatom blooms did not show a regular pattern during both years. High nutrient inputs in late summer, associated with mild meteorological conditions, contributed to the development of a large diatom bloom in autumn 1995 where significant silicate depletion was witnessed. Generally, diatoms were more stenotherm than dinoflagellates in the Bay, whereas dinoflagellates were more stenohaline than diatoms. The statistical analyses showed that the two species, Bellerochea horologicalis , and Lithodesmioides polymorpha, var., tunisiense, appeared in a wide range of environmental conditions. An excess of phosphateversus nitrate appeared to be associated with red tides of, Gymnodinium spp, whereas Peridinium quinquecorne, showed the opposite. Phosphate concentrations appear to be crucial in this coastal environment, where diatom blooms are often limited by low silicate availability.

Development of Phaeocystis globosa blooms in the upwelling waters of the South Central coast of Viet Nam

Science.gov (United States)

Hai, Doan-Nhu; Lam, Nguyen-Ngoc; Dippner, Joachim W.

2010-11-01

Blooms of haptophyte algae in the south central coastal waters of Viet Nam often occur in association with upwelling phenomenon during the southwest (SW) monsoon. Depending on the magnitude of the blooms, damage to aquaculture farms may occur. Based on two years of data on biology, oceanography, and marine chemistry, the present study suggests a conceptual model of the growth of the haptophyte Phaeocystis globosa. At the beginning of the bloom, low temperature and abundant nutrient supply, especially nitrate from rain and upwelling, favour bloom development. Diatoms utilize available nitrate and phosphate; subsequently, higher ammonium concentration allows P. globosa to grow faster than the diatoms. At the end of the Phaeocystis bloom, free cells may become available as food for a heterotrophic dinoflagellate species, Noctiluca scintillans. During and after the phytoplankton bloom, remineralization by bacteria reduces dissolved oxygen to a very low concentration at depth, and favors growth of nitrate-reducing bacteria.A Lagrangian Harmful Algal Bloom (HAB) model, driven by a circulation model of the area, realistically simulates the transport of microalgae in surface waters during strong and weak SW monsoon periods, suggesting that it may be a good tool for early warning of HABs in Vietnamese coastal waters.

Optimization of Alkaline Flocculation for Harvesting of Scenedesmus quadricauda #507 and Chaetoceros muelleri #862

Directory of Open Access Journals (Sweden)

Shuhao Huo

2014-09-01

Full Text Available A response surface methodology (RSM was used to evaluate the effects of pH and microalgal biomass concentration (BC on alkaline flocculating activity for harvesting one freshwater green algae Scenedesmus quadricauda #507 and one marine diatom Chaetoceros muelleri #862. The pH value and BC were in range of 9.0–12.0 and 0.20–2.30 g/L, respectively. Very high regression coefficient between the variables and the response indicates excellent evaluation of experimental data by second-order regressions. Optimum conditions for flocculating activity were estimated as follows: (i pH 11.6, BC 0.54 g/L for strain #507 and (ii pH 11.5, BC 0.42 g/L for strain #862. The maximum flocculating activity was around 94.7% and 100%, respectively. Furthermore, the addition of synthetic ocean water (SOW to the freshwater #507 culture can increase the flocculating activity from 82.13%–88.79% in low algae concentration (0.52 g/L and 82.92%–95.60% in high concentration (2.66 g/L.

Factors controlling the development of phytoplankton blooms in the Antarctic Ocean

International Nuclear Information System (INIS)

Sakshaug, Egil; Holm-Hansen, Osmund

1991-01-01

A mathematical model describing the development of phytoplankton blooms as a function of the depth of the wind-mixed layer, spectral distribution of light, passage of atmospheric low-pressure systems, size of the initial phytoplankton stock and loss rates is presented. Model runs represent shade-adapted, large-celled, bloom-forming diatoms Periodic deep mixing caused by strong winds may severely retard the development of blooms and frequently abort them before macronutrients are completely exhausted. Moderate depths of mixing (40-50 m) in combination with a moderately large total loss rate (about 0.013h -1 ) can prevent blooms from developing during the brightest time of the year. Complete exhaustion of macronutrients in the upper waters is likely only if the wind-mixed layer is less than 10 m deep, i.e. in very sheltered waters, and also in the marginal ice zone when ice is melting. The authors do not exclude the possibility of control of phytoplankton biomass by iron in ice-free, deep-sea parts of the Antarctic Ocean, but the implied enhancement of export production through addition of iron might be restricted because of limitation by light, i.e. vertical mixing. (author). 32 ref.; 5 figs.; 2 tabs

Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom.

Science.gov (United States)

Needham, David M; Fuhrman, Jed A

2016-02-29

Marine phytoplankton perform approximately half of global carbon fixation, with their blooms contributing disproportionately to carbon sequestration(1), and most phytoplankton production is ultimately consumed by heterotrophic prokaryotes(2). Therefore, phytoplankton and heterotrophic community dynamics are important in modelling carbon cycling and the impacts of global change(3). In a typical bloom, diatoms dominate initially, transitioning over several weeks to smaller and motile phytoplankton(4). Here, we show unexpected, rapid community variation from daily rRNA analysis of phytoplankton and prokaryotic community members following a bloom off southern California. Analysis of phytoplankton chloroplast 16S rRNA demonstrated ten different dominant phytoplankton over 18 days alone, including four taxa with animal toxin-producing strains. The dominant diatoms, flagellates and picophytoplankton varied dramatically in carbon export potential. Dominant prokaryotes also varied rapidly. Euryarchaea briefly became the most abundant organism, peaking over a few days to account for about 40% of prokaryotes. Phytoplankton and prokaryotic communities correlated better with each other than with environmental parameters. Extending beyond the traditional view of blooms being controlled primarily by physics and inorganic nutrients, these dynamics imply highly heterogeneous, continually changing conditions over time and/or space and suggest that interactions among microorganisms are critical in controlling plankton diversity, dynamics and fates.

Prevention of Cyanobacterial Blooms Using Nanosilica: A Biomineralization-Inspired Strategy.

Science.gov (United States)

Xiong, Wei; Tang, Yiming; Shao, Changyu; Zhao, Yueqi; Jin, Biao; Huang, Tingting; Miao, Ya'nan; Shu, Lei; Ma, Weimin; Xu, Xurong; Tang, Ruikang

2017-11-07

Cyanobacterial blooms represent a significant threat to global water resources because blooming cyanobacteria deplete oxygen and release cyanotoxins, which cause the mass death of aquatic organisms. In nature, a large biomass volume of cyanobacteria is a precondition for a bloom, and the cyanobacteria buoyancy is a key parameter for inducing the dense accumulation of cells on the water surface. Therefore, blooms will likely be curtailed if buoyancy is inhibited. Inspired by diatoms with naturally generated silica shells, we found that silica nanoparticles can be spontaneously incorporated onto cyanobacteria in the presence of poly(diallyldimethylammonium chloride), a cationic polyelectrolyte that can simulate biosilicification proteins. The resulting cyanobacteria-SiO 2 complexes can remain sedimentary in water. This strategy significantly inhibited the photoautotrophic growth of the cyanobacteria and decreased their biomass accumulation, which could effectively suppress harmful bloom events. Consequently, several of the adverse consequences of cyanobacteria blooms in water bodies, including oxygen consumption and microcystin release, were significantly alleviated. Based on the above results, we propose that the silica nanoparticle treatment has the potential for use as an efficient strategy for preventing cyanobacteria blooms.

What if the Diatoms of the Deep Chlorophyll Maximum Can Ascend?

Science.gov (United States)

Villareal, T. A.

2016-02-01

Buoyancy regulation is an integral part of diatom ecology via its role in sinking rates and is fundamental to understanding their distribution and abundance. Numerous studies have documented the effects of size and nutrition on sinking rates. Many pelagic diatoms have low intrinsic sinking rates when healthy and nutrient-replete (deep chlorophyll maximum. The potential for ascending behavior adds an additional layer of complexity by allowing both active depth regulation similar to that observed in flagellated taxa and upward transport by some fraction of deep euphotic zone diatom blooms supported by nutrient injection. In this talk, I review the data documenting positive buoyancy in small diatoms, offer direct visual evidence of ascending behavior in common diatoms typical of both oceanic and coastal zones, and note the characteristics of sinking rate distributions within a single species. Buoyancy control leads to bidirectional movement at similar rates across a wide size spectrum of diatoms although the frequency of ascending behavior may be only a small portion of the individual species' abundance. While much remains to be learned, the paradigm of unidirectional downward movement by diatoms is both inaccurate and an oversimplification.

The genome of the diatom Thalassiosira pseudonana: Ecology,evolution, and metabolism

Energy Technology Data Exchange (ETDEWEB)

Ambrust, E.V.; Berges, J.; Bowler, C.; Green, B.; Martinez, D.; Putnam, N.; Zhou, S.; Allen, A.; Apt, K.; Bechner, M.; Brzezinski, M.; Chaal, B.; Chiovitti, A.; Davis, A.; Goodstein, D.; Hadi, M.; Hellsten,U.; Hildebrand, M.; Jenkins, B.; Jurka, J.; Kapitonov, V.; Kroger, N.; Lau, W.; Lane, T.; Larimer, F.; Lippmeier, J.; Lucas, S.; Medina, M.; Montsant, A.; Obornik, M.; Parker, M. Schnitzler; Palenik, B.; Pazour,G.; Richardson, P.; Rynearson, T.; Saito, M.; Schwartz, D.; Thamatrakoln,K.; Valentin, K.; Vardi, A.; Wilkerson, F.; Rokhsar, D.; Vardi, A.; Wilkerson, F.P.; Rokhsar, D.S.

2004-09-01

different evolutionary history from the higher plants that dominate photosynthesis on land. Higher plants and green, red and glaucophyte algae are derived from a primary endosymbiotic event in which a non-photosynthetic eukaryote acquired a chloroplast by engulfing (or being invaded by) a prokaryotic cyanobacterium. In contrast, dominant bloom-forming eukaryotic phytoplankton in the ocean, such as diatoms and haptophytes, were derived by secondary endosymbiosis whereby a non-photosynthetic eukaryote acquired a chloroplast by engulfing a photosynthetic eukaryote, probably a red algal endosymbiont (Fig. 1). Each endosymbiotic event led to new combinations of genes derived from the hosts and endosymbionts (7). Prior to this project, relatively few diatom genes had been sequenced, few chromosome numbers were known, and genetic maps did not exist (8). The ecological and evolutionary importance of diatoms motivated our sequencing and analysis of the nuclear, plastid, and mitochondrial genomes of the marine centric diatom Thalassiosira pseudonana.

Diatom-induced silicon isotopic fractionation in Antarctic sea ice

Science.gov (United States)

Francois, F.; Damien, C.; Jean-Louis, T.; Anthony, W.; Luc, A.

2006-12-01

We measured silicon-isotopic composition of dissolved silicon and biogenic silica collected by sequential melting from spring 2003 Antarctic pack ice (Australian sector). Sea ice is a key ecosystem in the Southern Ocean and its melting in spring has been often thought to have a seeding effect for the surface waters, triggering blooms in the mixed layer. This work is the first investigation of the silicon isotopes' proxy in sea ice and allows to estimate the activity of sea-ice diatoms in the different brine structures and the influence of sea- ice diatoms on the spring ice edge blooms. The relative use of the dissolved silicon pool by sea-ice diatoms is usually assessed by calculating nutrient:salinity ratios in the brines. However such an approach is biased by difficulties in evaluating the initial nutrient concentrations in the different brines structures, and by the impossibility to account for late sporadic nutrient replenishments. The silicon-isotopic composition of biogenic silica is a convenient alternative since it integrates an average Si utilization on all generations of diatoms. Measurements were performed on a MC-ICP-MS, in dry plasma mode using external Mg doping. Results are expressed as delta29Si relative to the NBS28 standard. From three sea ice cores with contrasted physico-chemical characteristics, we report significant isotopic fractionations linked to the diatoms activity, with distinct silicon biogeochemical dynamics between different brine structure. The diatoms in snow ice and in brine pockets of frazil or congelation ice have the most positive silicon-isotopic composition (+0.53 to +0.86 p.mil), indicating that they grow in a closed system and use a significant part of the small dissolved silicon pool. In the brine channels and skeletal layer, diatoms display a relatively less positive Si-isotopic composition (+0.41 to +0.70 p.mil), although it is still heavier compared to equilibrium fractionation (+0.38 p.mil). This suggests that they have

Swarming of pelagic tunicates associated with phytoplankton bloom in the Bay of Bengal

Digital Repository Service at National Institute of Oceanography (India)

Madhupratap, M.; Devassy, V.P.; Nair, S.R.S.; Rao, T.S.S.

During the 40th cruise of R V Gaveshani, a large swarm pelagic tunicates associated with a bloom of diatoms and blue green algae was observed off Nagapattinam. The doliolid Dolioletta gegenbauri, Uljanin, the salp Thalia democratica Forskal...

Impact of elevated CO2 concentrations on the growth and ultrastructure of non-calcifying marine diatom (Chaetoceros gracilis F.Schütt

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Hanan M. Khairy

2014-01-01

Full Text Available The impacts of different CO2 concentrations on the growth, physiology and ultrastructure of noncalcifying microalga Chaetoceros gracilis F.Schütt (Diatom were studied. We incubated Ch. gracilis under different CO2 concentrations, preindustrial and current ambient atmospheric concentrations (285 and 385 μatm, respectively or predicted year-2100 CO2 levels (550, 750 and 1050 μatm in continuous culture conditions. The growth of Ch. gracilis measured as cell number was decreased by increasing the pCO2 concentration from nowadays concentration (385 μatm to 1050 μatm. The lowest percentage changes of oxidizable organic matter, nitrite, nitrate, phosphate and silicate were recorded at a higher pCO2 (1050 μatm, and this is in consistence with the lowest recorded cell number indicating unsuitable conditions for the growth of Ch. gracilis. The minimum cell numbers obtained at higher levels of CO2 clearly demonstrate that, low improvement occurred when the carbon level was raised. This was confirmed by a highly negative correlation between cell number and carbon dioxide partial pressure (r = −0.742, p ⩽ 0.05. On the other hand, highest growth rate at pCO2 = 385 μatm was also confirmed by the maximum uptake of nutrient salts (NO3 = 68.96 μmol.l−1, PO4 = 29.75 μmol.l−1, Si2O3 = 36.99 μmol.l−1. Total protein, carbohydrate and lipid composition showed significant differences (p ⩽ 0.05 at different carbon dioxide concentrations during the exponential growth phase (day 8. Transmission Electron Microscopy of Ch. gracilis showed enlargement of the cell, chloroplast damage, disorganization and disintegration of thylakoid membranes; cell lysis occurs at a higher CO2 concentration (1050 μatm. It is concluded from this regression equation and from the results that the growth of Ch. gracilis is expected to decrease by increasing pCO2 and increasing ocean acidification.

Taxonomic studies of centric diatoms (Diatomeae: unusual nanoplanktonic forms and new records for Brazil

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Kaoli Pereira Cavalcante

2013-06-01

Full Text Available There have been few taxonomic studies of centric diatoms in lotic freshwater environments in Brazil, especially in terms of those including nanoplanktonic forms, which are often neglected in studies of local floras, because of their small size or confusing taxonomy. This is the first study focusing on centric diatoms in the flora of the state of Bahia, in northeastern Brazil. Plankton and periphyton attached to Eichornia crassipes were collected in the winter of 2009 in the Cachoeira River. The diatoms were analyzed and described under light and electron microscopies. Seventeen infrageneric taxa were identified. Cyclotella was represented by five taxa, and concerning of similarities between diacritical features of species in this genus, their descriptions were thoroughly detailed. This was the first time that Cyclotella atomus var. marina, previously recorded only in coastal areas of Japan and Korea, has been documented in a river in South America. We also identified two diatom taxa previously unrecorded in the flora of Brazil: C. cryptica and C. meduanae. Finally, we present a detailed light, transmission and scanning electron microscopy analysis of Skeletonema potamos, a diatom rarely found in the Brazilian literature.

Seasonal resource conditions favor a summertime increase in North Pacific diatom-diazotroph associations.

Science.gov (United States)

Follett, Christopher L; Dutkiewicz, Stephanie; Karl, David M; Inomura, Keisuke; Follows, Michael J

2018-02-15

In the North Pacific Subtropical Gyre (NPSG), an annual pulse of sinking organic carbon is observed at 4000 m between July and August, driven by large diatoms found in association with nitrogen fixing, heterocystous, cyanobacteria: Diatom-Diazotroph Associations (DDAs). Here we ask what drives the bloom of DDAs and present a simplified trait-based model of subtropical phototroph populations driven by observed, monthly averaged, environmental characteristics. The ratio of resource supply rates favors nitrogen fixation year round. The relative fitness of DDA traits is most competitive in early summer when the mixed layer is shallow, solar irradiance is high, and phosphorus and iron are relatively abundant. Later in the season, as light intensity drops and phosphorus is depleted, the traits of small unicellular diazotrophs become more competitive. The competitive transition happens in August, at the time when the DDA export event occurs. This seasonal dynamic is maintained when embedded in a more complex, global-scale, ecological model, and provides predictions for the extent of the North Pacific DDA bloom. The model provides a parsimonious and testable hypothesis for the stimulation of DDA blooms.

Spatio-temporal interdependence of bacteria and phytoplankton during a Baltic Sea spring bloom

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Carina eBunse

2016-04-01

Full Text Available In temperate systems, phytoplankton spring blooms deplete inorganic nutrients and are major sources of organic matter for the microbial loop. In response to phytoplankton exudates and environmental factors, heterotrophic microbial communities are highly dynamic and change their abundance and composition both on spatial and temporal scales. Yet, most of our understanding about these processes comes from laboratory model organism studies, mesocosm experiments or single temporal transects. Spatial-temporal studies examining interactions of phytoplankton blooms and bacterioplankton community composition and function, though being highly informative, are scarce. In this study, pelagic microbial community dynamics (bacteria and phytoplankton and environmental variables were monitored during a spring bloom across the Baltic Proper (two cruises between North Germany to Gulf of Finland. To test to what extent bacterioplankton community composition relates to the spring bloom, we used next generation amplicon sequencing of the 16S rRNA gene, phytoplankton diversity analysis based on microscopy counts and population genotyping of the dominating diatom Skeletonema marinoi. Several phytoplankton bloom related and environmental variables were identified to influence bacterial community composition. Members of Bacteroidetes and Alphaproteobacteria dominated the bacterial community composition but the bacterial groups showed no apparent correlation with direct bloom related variables. The less abundant bacterial phyla Actinobacteria, Planctomycetes, and Verrucomicrobia, on the other hand, were strongly associated with phytoplankton biomass, diatom:dinoflagellate ratio and colored dissolved organic matter (cDOM. Many bacterial operational taxonomic units (OTUs showed high niche specificities. For example, particular Bacteroidetes OTUs were associated with two distinct genetic clusters of S. marinoi. Our study revealed the complexity of interactions of bacterial

Benthic dinoflagellate blooms in tropical intertidal rock pools: Elucidation of photoprotection mechanisms

Digital Repository Service at National Institute of Oceanography (India)

Patil, J.S.; Rodrigues, R.V.; Paul, P.; Sathish, K.; Rafi, M.; Anil, A.C.

(HT), mid tide (MT), and low tide (LT) zones on the rocky shores of Anjuna, Goa (India) facing the Arabian Sea. MT-RPs and LT-RPs were dominated by diatoms and HT-RPs by dinoflagellates due to the blooms of autotrophic benthic dinoflagellates belonging...

Massive outbreaks of Noctiluca scintillans blooms in the Arabian Sea due to spread of hypoxia.

Digital Repository Service at National Institute of Oceanography (India)

Gomes, H.R.; Goes, J.I.; Matondkar, S.G.P.; Buskey, E.J.; Basu, S.; Parab, S.G.; Thoppil, P.G.

In the last decade, the northern Arabian Sea has witnessed a radical shift in the composition of winter phytoplankton blooms, which previously comprised mainly of diatoms, the unicellular, siliceous photosynthetic organisms favoured by nutrient...

A winter dinoflagellate bloom drives high rates of primary production in a Patagonian fjord ecosystem

Science.gov (United States)

Montero, P.; Pérez-Santos, I.; Daneri, G.; Gutiérrez, M. H.; Igor, G.; Seguel, R.; Purdie, D.; Crawford, D. W.

2017-12-01

A dense winter bloom of the dinoflagellate Heterocapsa triquetra was observed at a fixed station (44°35.3‧S; 72°43.6‧W) in the Puyuhuapi Fjord in Chilean Patagonia during July 2015. H. triquetra dominated the phytoplankton community in the surface waters between 2 and 15 m (13-58 × 109 cell m-2), with abundances some 3 to 15 times higher than the total abundance of the diatom assemblage, which was dominated by Skeletonema spp. The high abundance of dinoflagellates was reflected in high rates of gross primary production (GPP; 0.6-1.6 g C m-2 d-1) and chlorophyll-a concentration (Chl-a; 70-199.2 mg m-2) that are comparable to levels reported in spring diatom blooms in similar Patagonian fjords. We identify the main forcing factors behind a pulse of organic matter production during the non-productive winter season, and test the hypothesis that low irradiance levels are a key factor limiting phytoplankton blooms and subsequent productivity during winter. Principal Component Analysis (PCA) indicated that GPP rates were significantly correlated (r = -0.8, p bloom. The bloom occurred under low surface irradiance levels characteristic of austral winter and was accompanied by strong northern winds, associated with the passage of a low-pressure system, and a water column dominated by double diffusive layering. To our knowledge, this is the first report of a dense dinoflagellate bloom during deep austral winter in a Patagonian fjord, and our data challenge the paradigm of light limitation as a factor controlling phytoplankton blooms in this region in winter.

Approaches for identifying change in the abundance and historical distribution of a freshwater diatom

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Spaulding, S. A.; Pite, D.; Wolfe, A. P.; Sundareshwar, P. V.

2011-12-01

The diatom Didymosphenia geminata (Bacillariophyta) has been considered native to high latitudes of the Northern Hemisphere. In recent years, this species has expanded its range to New Zealand and South America, forming large, invasive blooms in rivers. In contrast, historical populations in Alaska (Katmai National Park) have remained unchanged, while those in at least one Montana site have declined. In addition to a complex distributional history, this diatom has proven its remarkable ability to produce high amounts of biomass in low nutrient rivers. The high biomass is composed of the diatom cytoplasm and silica cell wall, but the high amounts of organic mater are mostly composed of extracellular mucopolysaccaride stalks. For example, in a low nutrient river, Lake Creek in Grand Teton National Park, the biovolume of D. geminata was estimated to be 57 m3 / km of stream, containing nearly 400 μg P / g stalk (dry weight). We examine the recent pattern of expansion of this species, the geochemical processes associated with the stalk, and paleolimnological record to 10,000 ybp to access the ecological factors that relate to the geographic distribution of this microscopic species on a regional and global scale.

Diatom evidence for the onset of Pliocene cooling from AND-1B, McMurdo Sound, Antarctica

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Riesselman, Christina; Dunbar, R. B.

2013-01-01

The late Pliocene, ~ 3.3–3.0 Ma, is the most recent interval of sustained global warmth in the geologic past. This window is the focus of climate reconstruction efforts by the U.S. Geological Survey's Pliocene Research, Interpretation, and Synoptic Mapping (PRISM) Data/Model Cooperative, and may provide a useful climate analog for the coming century. Reconstructions of past surface ocean conditions proximal to the Antarctic continent are essential to understanding the sensitivity of the cryosphere to this key interval in Earth's climate evolution. An exceptional marine sediment core collected from the southwestern Ross Sea (78° S), Antarctica, during ANDRILL's McMurdo Ice Shelf Project preserves evidence of dramatic fluctuations between grounded ice and productive, open ocean conditions during the late Pliocene, reflecting orbitally-paced glacial/interglacial cycling. In this near-shore record, diatom-rich sediments are recovered from interglacial intervals; two of these diatomites, from ~ 3.2 Ma and 3.03 Ma, are within the PRISM chronologic window. The diatom assemblages identified in PRISM-age late Pliocene diatom-rich sediments are distinct from those in mid-Pliocene and later Pliocene/Pleistocene intervals recovered from AND-1B, and comprise both extant taxa with well-constrained ecological preferences and a diverse extinct flora, some members of which are previously undescribed from Antarctic sediments. Both units are dominated by Chaetoceros resting spores, an indicator of high productivity and stratification that is present at much lower abundance in materials both older and younger than the PRISM-age sediments. Newly described species of the genus Fragilariopsis, which first appear in the AND-1B record at 3.2 Ma, are the most abundant extinct members of the PRISM-age assemblages. Other extant species with established environmental affinities, such as Fragilariopsis sublinearis, F. curta, Stellarima microtrias, and Thalassiothrix antarctica, are

Coastal upwelling linked to toxic Pseudo-nitzschia australis blooms in Los Angeles coastal waters, 2005-2007

KAUST Repository

Schnetzer, Astrid; Jones, Burton; Schaffner, Rebecca A.; Cetinić, Ivona; Fitzpatrick, Elizabeth; Miller, Peter E.; Seubert, Erica L.; Caron, David A.

2013-01-01

Harmful algal blooms dominated by the diatom Pseudo-nitzschia spp. have become a perennial but variable event within surface waters near the greater Los Angeles area. Toxic blooms during spring seasons from 2005 to 2007 varied strongly in their overall toxicity and duration. Differences in bloom dynamics were linked to differences in storm-induced river discharge following episodic rain events and coastal upwelling, both major coastal processes that led to the injection of nutrients into coastal surface waters. Heavy river runoff during early 2005, a record-rainfall year, favored a phytoplankton community mainly comprised of algal taxa other than Pseudo-nitzschia. The spring bloom during 2005 was associated with low domoic acid surface concentrations and minor contributions of (mainly) P. delicatissima to the diatom assemblage. In contrast, highly toxic P. australis-dominated blooms during spring seasons of 2006 and 2007 were linked to strong upwelling events. River discharge quotas in 2006 and 2007, in contrast to 2005, fell well below annual averages for the region. Surface toxin levels were linked to colder, more saline (i.e. upwelled) water over the 3-year study, but no such consistent relationship between domoic acid levels and other physiochemical parameters, such as macronutrient concentrations or nutrient ratios, was observed. © The Author 2013. Published by Oxford University Press. All rights reserved.

Coastal upwelling linked to toxic Pseudo-nitzschia australis blooms in Los Angeles coastal waters, 2005-2007

KAUST Repository

Schnetzer, Astrid

2013-06-10

Harmful algal blooms dominated by the diatom Pseudo-nitzschia spp. have become a perennial but variable event within surface waters near the greater Los Angeles area. Toxic blooms during spring seasons from 2005 to 2007 varied strongly in their overall toxicity and duration. Differences in bloom dynamics were linked to differences in storm-induced river discharge following episodic rain events and coastal upwelling, both major coastal processes that led to the injection of nutrients into coastal surface waters. Heavy river runoff during early 2005, a record-rainfall year, favored a phytoplankton community mainly comprised of algal taxa other than Pseudo-nitzschia. The spring bloom during 2005 was associated with low domoic acid surface concentrations and minor contributions of (mainly) P. delicatissima to the diatom assemblage. In contrast, highly toxic P. australis-dominated blooms during spring seasons of 2006 and 2007 were linked to strong upwelling events. River discharge quotas in 2006 and 2007, in contrast to 2005, fell well below annual averages for the region. Surface toxin levels were linked to colder, more saline (i.e. upwelled) water over the 3-year study, but no such consistent relationship between domoic acid levels and other physiochemical parameters, such as macronutrient concentrations or nutrient ratios, was observed. © The Author 2013. Published by Oxford University Press. All rights reserved.

The paradox of algal blooms in oligotrophic waters

Science.gov (United States)

Sundareshwar, P. V.; Upadhyay, S.; Abessa, M. B.; Honomichl, S.; Berdanier, B.; Spaulding, S.; Sandvik, C.; Trennepohl, A.

2010-12-01

Nutrient inputs to streams and lakes, primarily from anthropogenic sources, lead to eutrophic conditions that favor algal blooms with undesirable consequences. In contrast, low nutrient or oligotrophic waters rarely support algal blooms; such ecosystems are typically lower in productivity. Since the mid-1980’s however, the diatom Didymosphenia geminata has dramatically expanded its range colonizing oligotrophic rivers worldwide with blooms appearing as thick benthic mats. This recent global occurrence of Didymosphenia geminata blooms in temperate rivers has been perplexing in its pace of spread and the paradoxical nature of the nuisance growths. The blooms occur primarily in oligotrophic flowing waters, where phosphorus (P) availability often limits primary production. We present a biogeochemical process by which D. geminata mats adsorb both P and iron (Fe) from flowing waters and make P available for cellular uptake. The adsorbed P becomes bioavailable through biogeochemical processes that occur within the mat. The biogeochemical processes observed here while well accepted in benthic systems are novel for algal blooms in lotic habits. Enzymatic and bacterial processes such as Fe and sulfate reduction can release the adsorbed P and increase its bioavailability, creating a positive feedback between total stalk biomass and nutrient availability. Stalk affinity for Fe, Fe-P biogeochemistry, and interaction between watershed processes and climatic setting explain the paradoxical blooms, and the recent global spread of this invasive aquatic species. At a broader scale the study also implies that such algal blooms in oligotrophic environments can fundamentally alter the retention and longitudinal transfer of important nutrients such as P in streams and rivers.

Identification of non-indigenous phytoplankton species dominated bloom off Goa using inverted microscopy and pigment (HPLC) analysis

Science.gov (United States)

Bhaskar, P. V.; Roy, Rajdeep; Gauns, Mangesh; Shenoy, D. M.; Rao, V. D.; Mochemadkar, S.

2011-12-01

An unusual phytoplankton bloom dominated by unidentified green coloured spherical algal cells (˜5μm diameter) and dinoflagellates ( Heterocapsa, Scripsiella and Gymnodinium) was encountered along the coast of Goa, India during 27 and 29 January, 2005. Pigment analysis was carried out using both fluorometric and HPLC methods. Seawater samples collected from various depths within the intense bloom area showed high concentrations of Chl a (up to 106 mg m - 3) associated with low bacterial production (0.31 to 0.52 mg C m - 3 h - 1) and mesozooplankton biomass (0.03 ml m - 3). Pigment analyses of the seawater samples were done using HPLC detected marker pigments corresponding to prasinophytes, dinoflagellates and diatoms. Chlorophyll b (36-56%) followed by peridinin (15-30%), prasinoxanthin (11-17%) and fucoxanthin (7-15%) were the major diagnostic pigments while pigments of cryptophytes and cyanobacteria including alloxanthin and zeaxanthin formed <10%. Although microscopic analysis indicated a decline in the bloom, pheaophytin concentrations in the water column measured by both techniques were very low, presumably due to fast recycling and/or settling rate. The unique composition of the bloom and its probable causes are discussed in this paper.

Natural and anthropogenic nitrogen uptake by bloom-forming macroalgae

International Nuclear Information System (INIS)

Thornber, Carol S.; DiMilla, Peter; Nixon, Scott W.; McKinney, Richard A.

2008-01-01

The frequency and duration of macroalgal blooms have increased in many coastal waters over the past several decades. We used field surveys and laboratory culturing experiments to examine the nitrogen content and δ 15 N values of Ulva and Gracilaria, two bloom-forming algal genera in Narragansett Bay, RI (USA). The northern end of this bay is densely populated with large sewage treatment plant nitrogen inputs; the southern end is more lightly populated and opens to the Atlantic Ocean. Field-collected Ulva varied in δ 15 N among sites, but with two exceptions had δ 15 N above 10 per mille , reflecting a significant component of heavy anthropogenic N. This variation was not correlated with a north-south gradient. Both Ulva and Gracilaria cultured in water from across Narragansett Bay also had high signals (δ 15 N = ∼14-17 per mille and 8-12 per mille , respectively). These results indicate that inputs of anthropogenic N can have far-reaching impacts throughout estuaries

Natural and anthropogenic nitrogen uptake by bloom-forming macroalgae

Energy Technology Data Exchange (ETDEWEB)

Thornber, Carol S. [Department of Biological Sciences, 100 Flagg Road, University of Rhode Island, Kingston, RI 02881 (United States)], E-mail: thornber@uri.edu; DiMilla, Peter; Nixon, Scott W. [Graduate School of Oceanography, University of Rhode Island, South Ferry Road, Narragansett, RI 02881 (United States); McKinney, Richard A. [US Environmental Protection Agency, Atlantic Ecology Division, 27 Tarzwell Drive, Narragansett, RI 02882 (United States)

2008-02-15

The frequency and duration of macroalgal blooms have increased in many coastal waters over the past several decades. We used field surveys and laboratory culturing experiments to examine the nitrogen content and {delta}{sup 15}N values of Ulva and Gracilaria, two bloom-forming algal genera in Narragansett Bay, RI (USA). The northern end of this bay is densely populated with large sewage treatment plant nitrogen inputs; the southern end is more lightly populated and opens to the Atlantic Ocean. Field-collected Ulva varied in {delta}{sup 15}N among sites, but with two exceptions had {delta}{sup 15}N above 10 per mille , reflecting a significant component of heavy anthropogenic N. This variation was not correlated with a north-south gradient. Both Ulva and Gracilaria cultured in water from across Narragansett Bay also had high signals ({delta}{sup 15}N = {approx}14-17 per mille and 8-12 per mille , respectively). These results indicate that inputs of anthropogenic N can have far-reaching impacts throughout estuaries.

Natural and anthropogenic nitrogen uptake by bloom-forming macroalgae.

Science.gov (United States)

Thornber, Carol S; DiMilla, Peter; Nixon, Scott W; McKinney, Richard A

2008-02-01

The frequency and duration of macroalgal blooms have increased in many coastal waters over the past several decades. We used field surveys and laboratory culturing experiments to examine the nitrogen content and delta(15)N values of Ulva and Gracilaria, two bloom-forming algal genera in Narragansett Bay, RI (USA). The northern end of this bay is densely populated with large sewage treatment plant nitrogen inputs; the southern end is more lightly populated and opens to the Atlantic Ocean. Field-collected Ulva varied in delta(15)N among sites, but with two exceptions had delta(15)N above 10 per thousand, reflecting a significant component of heavy anthropogenic N. This variation was not correlated with a north-south gradient. Both Ulva and Gracilaria cultured in water from across Narragansett Bay also had high signals (delta(15)N= approximately 14-17 per thousand and 8-12 per thousand, respectively). These results indicate that inputs of anthropogenic N can have far-reaching impacts throughout estuaries.

Genome-derived insights into the biology of the hepatotoxic bloom-forming cyanobacterium Anabaena sp. strain 90

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Wang Hao

2012-11-01

Full Text Available Abstract Background Cyanobacteria can form massive toxic blooms in fresh and brackish bodies of water and are frequently responsible for the poisoning of animals and pose a health risk for humans. Anabaena is a genus of filamentous diazotrophic cyanobacteria commonly implicated as a toxin producer in blooms in aquatic ecosystems throughout the world. The biology of bloom-forming cyanobacteria is poorly understood at the genome level. Results Here, we report the complete sequence and comprehensive annotation of the bloom-forming Anabaena sp. strain 90 genome. It comprises two circular chromosomes and three plasmids with a total size of 5.3 Mb, encoding a total of 4,738 genes. The genome is replete with mobile genetic elements. Detailed manual annotation demonstrated that almost 5% of the gene repertoire consists of pseudogenes. A further 5% of the genome is dedicated to the synthesis of small peptides that are the products of both ribosomal and nonribosomal biosynthetic pathways. Inactivation of the hassallidin (an antifungal cyclic peptide biosynthetic gene cluster through a deletion event and a natural mutation of the buoyancy-permitting gvpG gas vesicle gene were documented. The genome contains a large number of genes encoding restriction-modification systems. Two novel excision elements were found in the nifH gene that is required for nitrogen fixation. Conclusions Genome analysis demonstrated that this strain invests heavily in the production of bioactive compounds and restriction-modification systems. This well-annotated genome provides a platform for future studies on the ecology and biology of these important bloom-forming cyanobacteria.

Dissolved lipid production in the Northern Adriatic (Mediterranean) in response to sea surface warmin

Science.gov (United States)

Gasparovic, Blazenka; Novak, Tihana; Godrijan, Jelena; Mlakar, Marina; MAric, Daniela; Djakovac, Tamara

2017-04-01

Marine dissolved organic matter (OM) represents one of the largest active pools of organic carbon in the global carbon cycle. Oceans and seas are responsible for half of global primary production. Ocean warming caused by climate change is already starting to impact the marine life that necessary will have impact on ocean productivity. The partition of OM production by phytoplankton (major OM producer in seas and ocens) in the conditions of rising temperatures may considerably change. This has implications for the export of organic matter from the photic zone. In this study, we set out to see how annual temperature changes between 10 and 30 C in the Northern Adriatic (Mediterranean) affect production of DOM and particularly dissolved lipids and lipid classes. We have sampled at two stations being oligotrophic and mesotrophic where we expected different system reaction to temperature changes. In addition, we performed microcosm incubations covering temperature range of the NA with nutrient amendments to test whether changes in the available nutrients would reflect those of dissolved OM in the NA. We have selected to work with extracellular OM produced during growth of diatom Chaetoceros curvisetus cultures according to the criteria that genera Chaetoceros are important component of the phytoplankton in the NA and are often among bloom-forming taxa. Details on the dissolved lipid and lipid classes production as plankton responce to rising temperature will be discussed.

Assessing the viability of microorganisms in the ballast water of vessels transiting the North Atlantic Ocean.

Science.gov (United States)

Steichen, Jamie L; Quigg, Antonietta

2015-12-15

Testing phytoplankton viability within ballast tanks and receiving waters of ballast water discharge remain understudied. Potentially harmful dinoflagellates and diatoms are transported via ballast water to Galveston Bay, Texas (USA), home to three major ports: Houston, Texas City and Galveston. Ballast water from vessels transiting the North Atlantic Ocean was inoculated into treatments representing low and high salinity conditions similar to the Ports of Houston and Galveston respectively. Phytoplankton in ballast water growout experiments were deemed viable and showed growth in low and mid salinities with nutrient enrichment. Molecular methods identified several genera: Dinophysis, Gymnodinium, Gyrodinium, Heterocapsa, Peridinium, Scrippsiella, Chaetoceros and Nitzschia. These phytoplankton genera were previously identified in Galveston Bay except Scrippsiella. Phytoplankton, including those capable of forming harmful algal blooms leading to fish and shellfish kills, are transported to Galveston Bay via ballast water, and are viable when introduced to similar salinity conditions found in Galveston Bay ports. Copyright © 2015 Elsevier Ltd. All rights reserved.

Consequences of Stinging Plankton Blooms on Finfish Mariculture in the Mediterranean Sea

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Mar Bosch-Belmar

2017-08-01

Full Text Available In recent years, caged finfish mariculture across European seas suffered production losses by severe fish mortality, following episodic outbreaks of invertebrate cnidarian stingers. Due to their stinging cells and injectable venoms, medusozoan jellyfish, or drifting propagules of polyp colonies at high density may impair caged fish health through toxic effects on vulnerable tissues of gills and skin, and related secondary bacterial infections. Gill disorders in European sea bass (Dicentrarchus labrax fish farms along the Spanish Mediterranean coast are commonly reported, but regular monitoring of the frequency of cnidarian outbreaks and their potential impacts on caged fish is still poorly enforced. In this study, two sea bass mariculture farms in Southern Spain (Málaga; Almería were monitored biweekly for zooplankton, phytoplankton and fish gills condition, over 13 or 30 months for the Málaga and Almería facilities, respectively, within the period 2012–2014. Significant, direct correlations were found among low water temperature, recorded fish mortalities, and high abundances of planktonic cnidarians, particularly of the hydrozoan siphonophores Muggiaea atlantica and M. kochii, and the larval stage of Ectopleura larynx, a common member of cage biofouling communities. A significant relationship between cnidarian densities and the quantitative scoring of gill pathology was also observed. In addition, high densities of long-bristled planktonic diatoms (Chaetoceros spp. coincided with a major fish mortality event (April 2012, Almería farm. Standardised monitoring of plankton dynamics and composition may help in promoting response capacities of Mediterranean mariculture managers to fish health challenges (such as stinging plankton blooms by (a improving diagnostic tools and preventative countermeasures and (b supporting the development of science-based spatial planning and sustainable growth of coastal mariculture.

BIO-OPTICAL CHARACTERIZATION OF THE DINOFLAGELLATE GYMNODINIUM BREVE AND THE DIATOM THALASSIOSIRA WEISSFLOGII IN OUTDOOR TANKS

Science.gov (United States)

The bio-optical signatures of harmful algal blooms can be used to define ocean color satellite algorithms. We characterized the bio-optical properties of nutrient-replete cultures of the red tide dinoflagellate Gymnodinium breve and the diatom Thalassiosira weissflogii. We cultur...

Winter−spring transition in the subarctic Atlantic: microbial response to deep mixing and pre-bloom production

DEFF Research Database (Denmark)

Paulsen, Maria Lund; Riisgaard, Karen; Thingstad, T. Frede

2015-01-01

In temperate, subpolar and polar marine systems, the classical perception is that diatoms initiate the spring bloom and thereby mark the beginning of the productive season. Contrary to this view, we document an active microbial food web dominated by pico- and nanoplankton prior to the diatom bloom......, a period with excess nutrients and deep convection of the water column. During repeated visits to stations in the deep Iceland and Norwegian basins and the shallow Shetland Shelf (26 March to 29 April 2012), we investigated the succession and dynamics of photo - synthetic and heterotrophic microorganisms....... We observed that the early phytoplankton production was followed by a decrease in the carbon:nitrogen ratio of the dissolved organic matter in the deep mixed stations, an increase in heterotrophic prokaryote (bacteria) abundance and activity (indicated by the high nucleic acid:low nucleic acid...

Chronic Iron Limitation Confers Transient Resistance to Oxidative Stress in Marine Diatoms.

Science.gov (United States)

Graff van Creveld, Shiri; Rosenwasser, Shilo; Levin, Yishai; Vardi, Assaf

2016-10-01

Diatoms are single-celled, photosynthetic, bloom-forming algae that are responsible for at least 20% of global primary production. Nevertheless, more than 30% of the oceans are considered "ocean deserts" due to iron limitation. We used the diatom Phaeodactylum tricornutum as a model system to explore diatom's response to iron limitation and its interplay with susceptibility to oxidative stress. By analyzing physiological parameters and proteome profiling, we defined two distinct phases: short-term (chronic (>5 d, phase II) iron limitation. While at phase I no significant changes in physiological parameters were observed, molecular markers for iron starvation, such as Iron Starvation Induced Protein and flavodoxin, were highly up-regulated. At phase II, down-regulation of numerous iron-containing proteins was detected in parallel to reduction in growth rate, chlorophyll content, photosynthetic activity, respiration rate, and antioxidant capacity. Intriguingly, while application of oxidative stress to phase I and II iron-limited cells similarly oxidized the reduced glutathione (GSH) pool, phase II iron limitation exhibited transient resistance to oxidative stress, despite the down regulation of many antioxidant proteins. By comparing proteomic profiles of P. tricornutum under iron limitation and metatranscriptomic data of an iron enrichment experiment conducted in the Pacific Ocean, we propose that iron-limited cells in the natural environment resemble the phase II metabolic state. These results provide insights into the trade-off between optimal growth rate and susceptibility to oxidative stress in the response of diatoms to iron quota in the marine environment. © 2016 American Society of Plant Biologists. All Rights Reserved.

Selective grazing of Temora longicornis in different stages of a Phaeocystis globosa bloom - a mesocosm study

DEFF Research Database (Denmark)

Koski, Marja; Dutz, Jörg; Breteler, W.C.M.K.

2005-01-01

changes during the initiation, maintenance, collapse and decay of a P. globosa bloom and (3) if P. globosa dominated food assemblage provides a good diet for copepod egg production. Our results show low but constant feeding on small colonies of P. globosa, irrespective of the type or concentration...... of alternative food sources. In contrast, feeding on single cells was never significant, and the total contribution of P globosa to carbon ingestion of T longicornis was minor. T longicornis fed most actively on the decaying colonies, whereas during the peak of the bloom copepods selected against P globosa....... Mostly, T longicornis fed unselectively on different food particles: before the bloom, the major part of the diet consisted of diatoms, whereas during and after the bloom copepod diet was dominated by dinoflagellates and ciliates. Egg production was highest during the decay of the bloom, coinciding...

Limits to gene flow in a cosmopolitan marine planktonic diatom.

Science.gov (United States)

Casteleyn, Griet; Leliaert, Frederik; Backeljau, Thierry; Debeer, Ann-Eline; Kotaki, Yuichi; Rhodes, Lesley; Lundholm, Nina; Sabbe, Koen; Vyverman, Wim

2010-07-20

The role of geographic isolation in marine microbial speciation is hotly debated because of the high dispersal potential and large population sizes of planktonic microorganisms and the apparent lack of strong dispersal barriers in the open sea. Here, we show that gene flow between distant populations of the globally distributed, bloom-forming diatom species Pseudo-nitzschia pungens (clade I) is limited and follows a strong isolation by distance pattern. Furthermore, phylogenetic analysis implies that under appropriate geographic and environmental circumstances, like the pronounced climatic changes in the Pleistocene, population structuring may lead to speciation and hence may play an important role in diversification of marine planktonic microorganisms. A better understanding of the factors that control population structuring is thus essential to reveal the role of allopatric speciation in marine microorganisms.

Phytoplankton aggregate formation: observations of patterns and mechanisms of cell sticking and the significance of exopolymeric material

DEFF Research Database (Denmark)

Kiørboe, Thomas; Hansen, Jorgen L. S.

1993-01-01

are sticky in themselves, and coagulation depends on cell-cell sticking and does not involve mucus. Aggregates are composed solely of cells. Cells of the diatom Chaetoceros affinis, on the other hand, are not in themselves sticky. Transparent exopolymeric particles (TEP), produced by the diatom, cause...... the cells to aggregate and coagulation depends on TEP-cell rather than cell-cell sticking. Aggregates are formed of a mixture of mucus and cells. We found several species of diatoms and one flagellate species to produce copious amounts of TEP. TEP from some species (e.g. Coscinodiscus sp.) is sticky and may...

Characterization of film-forming solutions and films incorporating free and nanoencapsulated tea polyphenol prepared by gelatins with different Bloom values

Science.gov (United States)

Gelatin film-forming solutions and their films incorporating tea polyphenol (TP) and chitosan nanoparticles (CSNs) were prepared from gelatins with different Bloom values (100, 150 and 225). Blank gelatin film-forming solutions and films were prepared as controls. Gelatins with higher Bloom values h...

Fine-scale distribution of zooplankton is linked to phytoplankton species composition and abundance in a North Norwegian fjord system

Science.gov (United States)

Norrbin, F.; Priou, P. D.; Varela, A. P.

2016-02-01

We studied the influence of dense layers of phytoplankton and aggregates on shaping the vertical distribution of zooplankton in a North Norwegian fjord using a Video Plankton Recorder (VPR). This instrument provided fine-scale vertical distribution (cm-m scale) of planktonic organisms as well as aggregates of marine snow in relation to environmental conditions. At the height - later stage of the spring phytoplankton bloom in May, the outer part of the fjord was dominated by Phaeocystis pouchetii, while diatoms (Chaetoceros spp.) were dominating in the innermost basin. Small copepods species like Pseudocalanus spp., Microsetella norvegica, and Oithona spp. prevailed over larger copepod species in the inner part of the fjord whereas the outer part was dominated by large copepods like Calanus finmarchicus. While the zooplankton where spread out over the water column during the early stage of the bloom, in May they were linked to the phytoplankton vertical distribution and in the winter situation they were found in deeper waters. Herbivorous zooplankton species were affected by phytoplankton species composition; C. finmarchicus and Pseudocalanus spp. avoided the dense layer of P. pouchetii while herbivorous zooplankton matched the distribution of the diatom-dominated bloom. Small, omnivorous copepod species like Microsetella sp., Oithona sp. and Pseudocalanus sp. were often associated with dense layers of snow aggregates. This distribution may provide a shelter from predators as well as a food source. Natural or anthropogenic-induced changes in phytoplankton composition and aggregate distribution may thus influence food-web interactions.

Mitigation of algal organic matter released from Chaetoceros affinis and Hymenomonas by in situ generated ferrate

KAUST Repository

Deka, Bhaskar Jyoti

2018-05-10

This study demonstrates the application of in situ ferrate (Fe(VI)) for the efficient removal of dissolved algal organic matter (AOM) from seawater. Sodium hypochlorite (NaOCl) and ferric (Fe(III)) were used to produce in situ Fe(VI) by wet chemical oxidation. First, the removal efficiencies of model AOM compounds, humic acid (HA), and sodium alginate (SA) were evaluated in the presence of sodium chloride with an initial influent dissolved organic carbon (DOC) concentration of 5.0 mg C L−1 at different pH levels to establish the optimal doses for in situ Fe(VI) generation. The concentration of Fe(VI) was determined by the 2,2-Azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) ultraviolet–visible spectrophotometry method. In the case of HA, 72% DOC removal was recorded when applied with 1.5 mg L−1 of Fe(III) and 1.5 mg L−1 of NaOCl (in situ Fe(VI) concentration of 1.46 mg L−1) while 42% DOC removal was observed for SA. Subsequently, the removal of AOM extracted from two bloom-forming algal species, Chaetoceros affinis (CA) and Hymenomonas (Hym), cultivated in seawater from the Red Sea, were tested with in situ generated Fe(VI) at the established optimum condition. In situ Fe(VI) recorded superior performance in removing AOM extracted from CA and Hym, showing 83% and 92% DOC removal when the influent DOC concentrations were 2.48 and 2.63 mg L−1, respectively. A detailed AOM characterization was conducted using liquid chromatography–organic carbon detection.

A stress surveillance system based on calcium and nitric oxide in marine diatoms.

Directory of Open Access Journals (Sweden)

Assaf Vardi

2006-03-01

Full Text Available Diatoms are an important group of eukaryotic phytoplankton, responsible for about 20% of global primary productivity. Study of the functional role of chemical signaling within phytoplankton assemblages is still in its infancy although recent reports in diatoms suggest the existence of chemical-based defense strategies. Here, we demonstrate how the accurate perception of diatom-derived reactive aldehydes can determine cell fate in diatoms. In particular, the aldehyde (2E,4E/Z-decadienal (DD can trigger intracellular calcium transients and the generation of nitric oxide (NO by a calcium-dependent NO synthase-like activity, which results in cell death. However, pretreatment of cells with sublethal doses of aldehyde can induce resistance to subsequent lethal doses, which is reflected in an altered calcium signature and kinetics of NO production. We also present evidence for a DD-derived NO-based intercellular signaling system for the perception of stressed bystander cells. Based on these findings, we propose the existence of a sophisticated stress surveillance system in diatoms, which has important implications for understanding the cellular mechanisms responsible for acclimation versus death during phytoplankton bloom successions.

Response of the ubiquitous pelagic diatom Thalassiosira weissflogii to darkness and anoxia.

Directory of Open Access Journals (Sweden)

Anja Kamp

Full Text Available Thalassiosira weissflogii, an abundant, nitrate-storing, bloom-forming diatom in the world's oceans, can use its intracellular nitrate pool for dissimilatory nitrate reduction to ammonium (DNRA after sudden shifts to darkness and anoxia, most likely as a survival mechanism. T. weissflogii cells that stored 4 mM (15N-nitrate consumed 1.15 (±0.25 fmol NO3 (- cell(-1 h(-1 and simultaneously produced 1.57 (±0.21 fmol (15NH4 (+ cell(-1 h(-1 during the first 2 hours of dark/anoxic conditions. Ammonium produced from intracellular nitrate was excreted by the cells, indicating a dissimilatory rather than assimilatory pathway. Nitrite and the greenhouse gas nitrous oxide were produced at rates 2-3 orders of magnitude lower than the ammonium production rate. While DNRA activity was restricted to the first few hours of darkness and anoxia, the subsequent degradation of photopigments took weeks to months, supporting the earlier finding that diatoms resume photosynthesis even after extended exposure to darkness and anoxia. Considering the high global abundance of T. weissflogii, its production of ammonium and nitrous oxide might be of ecological importance for oceanic oxygen minimum zones and the atmosphere, respectively.

Response of the ubiquitous pelagic diatom Thalassiosira weissflogii to darkness and anoxia.

Science.gov (United States)

Kamp, Anja; Stief, Peter; Knappe, Jan; de Beer, Dirk

2013-01-01

Thalassiosira weissflogii, an abundant, nitrate-storing, bloom-forming diatom in the world's oceans, can use its intracellular nitrate pool for dissimilatory nitrate reduction to ammonium (DNRA) after sudden shifts to darkness and anoxia, most likely as a survival mechanism. T. weissflogii cells that stored 4 mM (15)N-nitrate consumed 1.15 (±0.25) fmol NO3 (-) cell(-1) h(-1) and simultaneously produced 1.57 (±0.21) fmol (15)NH4 (+) cell(-1) h(-1) during the first 2 hours of dark/anoxic conditions. Ammonium produced from intracellular nitrate was excreted by the cells, indicating a dissimilatory rather than assimilatory pathway. Nitrite and the greenhouse gas nitrous oxide were produced at rates 2-3 orders of magnitude lower than the ammonium production rate. While DNRA activity was restricted to the first few hours of darkness and anoxia, the subsequent degradation of photopigments took weeks to months, supporting the earlier finding that diatoms resume photosynthesis even after extended exposure to darkness and anoxia. Considering the high global abundance of T. weissflogii, its production of ammonium and nitrous oxide might be of ecological importance for oceanic oxygen minimum zones and the atmosphere, respectively.

Dynamics of late spring and summer phytoplankton communities on Georges Bank, with emphasis on diatoms, Alexandrium spp., and other dinoflagellates

Science.gov (United States)

Gettings, Rachel M.; Townsend, David W.; Thomas, Maura A.; Karp-Boss, Lee

2014-05-01

We analyzed the distribution, abundance, and succession patterns of major phytoplankton taxa on Georges Bank in relation to hydrography, nutrients, and size-fractionated chlorophyll concentrations (>20 μm; Gymnodinium spp., and Prorocentrum spp., had become more abundant. Patches of regenerated silicate during the June-July period appeared to support a post-spring-bloom diatom community on the central crest of the Bank (total diatom cell densities >180,000 cellsl-1) of Leptocylindrus spp., Dactyliosolen spp., and Guinardia flaccida. Multivariate statistical analyses of phytoplankton taxa and station locations revealed distinct assemblages of diatom and dinoflagellate taxa on the Bank throughout the late spring and summer. Results are interpreted in the ecological context of earlier-reported laboratory culture experiments on the competitive interactions between Alexandrium fundyense and diatoms.

Mycosporine-like amino acids and xanthophyll-cycle pigments favour a massive spring bloom development of the dinoflagellate Prorocentrum minimum in Grande Bay (Argentina), an ozone hole affected area

Science.gov (United States)

Carreto, José I.; Carignan, Mario O.; Montoya, Nora G.; Cozzolino, Ezequiel; Akselman, Rut

2018-02-01

In Grande Bay (Southern Patagonian Shelf) in a eutrophic and recirculating area slightly stratified during spring, we observed an intense (up to 1 × 107 cells L- 1) and shallow, quasi mono-specific bloom of the dinoflagellate Prorocentrum minimum. Peridinin was the most abundant carotenoid, but the relative amounts of the xanthophyll cycle carotenoids (diadinoxanthin + diatoxanthin = DT) to light-harvesting pigments were high (DT/Chl a ratio = 0.32 and DT/peridinin ratio = 0.40). Shinorine, usujirene, palythene, mycosporine-serine-glycine methyl ester and palythenic acid were the primary mycosporine-like amino acids (MAAs), followed by mycosporine-glycine, palythine, and porphyra-334. The ΣMAAs/Chl a ratios (up to 27.9 nmol/nmol) were in the upper range reported either in nutrient-replete dinoflagellate cultures or natural populations. We monitored, from space (using satellite ocean colour data), the spatial and temporal bloom variability (from September 22 to October 31, 2005) using an approach to discriminate dinoflagellate from diatom blooms. The results indicated that an intense diatom bloom started in early spring but was rapidly replaced by an intense bloom of the dinoflagellate P. minimum, although the nutrient concentrations were apparently not limiting. The most notorious change in this period was a sharp increase in the levels of solar UVB radiation (UVB index 9.0) as a consequence of the overpass of the polar vortex over this area. We postulated that the synthesis and accumulation of MAAs and xanthophyll pigments, were competitive advantages for the opportunistic red tide dinoflagellate P. minimum over the sensitive diatoms, favouring the development of their surface blooms in this seasonally solar UVB radiation (UVBR) affected area.

Use of phosphorus to reduce blooms of the benthic diatom Didymosphenia geminata in an oligotrophic stream

Science.gov (United States)

James, Daniel A.; Bothwell, Max L.; Chipps, Steven R.; Carreiro, John

2015-01-01

Blooms of the benthic alga, Didymosphenia geminata [Lyngbye (Schmidt)], were first documented in Rapid Creek, South Dakota, in 2002 and have since been associated with changes to aquatic resources. Low concentration of P has been associated with D. geminata stalk development (i.e., blooms), so we considered elevating P as a possible method to reduce D. geminata blooms. We conducted 2 whole-stream P-enrichment experiments in Rapid Creek during 2007 and 2008. Enrichment with a slow-release fertilizer (Osmocote®: 14-14-14) in 2007 significantly reduced D. geminata blooms (indexed by D. geminata biomass) compared to upstream control sites. The reduction in biomass was less pronounced as distance from the enrichment source increased, a result indicating that P augmentation effectively decreased D. geminata biomass. In 2008, we implemented a before-after–control-impact (BACI) study to assess effects of a quick-release fertilizer (MAP: 11-52-0) on D. geminata biomass. The addition of 6 μg/L P to Rapid Creek resulted in a significant decrease in D. geminata biomass within 0.6 km downstream of the nutrient-addition point. Effects on D. geminata biomass were not evident further downstream. This study provides evidence to support the hypothesis that low P concentration regulates D. geminata blooms.

Potential habitat distribution for the freshwater diatom Didymosphenia geminata in the continental US

Science.gov (United States)

Kumar, S.; Spaulding, S.A.; Stohlgren, T.J.; Hermann, K.A.; Schmidt, T.S.; Bahls, L.L.

2009-01-01

The diatom Didymosphenia geminata is a single-celled alga found in lakes, streams, and rivers. Nuisance blooms of D geminata affect the diversity, abundance, and productivity of other aquatic organisms. Because D geminata can be transported by humans on waders and other gear, accurate spatial prediction of habitat suitability is urgently needed for early detection and rapid response, as well as for evaluation of monitoring and control programs. We compared four modeling methods to predict D geminata's habitat distribution; two methods use presence-absence data (logistic regression and classification and regression tree [CART]), and two involve presence data (maximum entropy model [Maxent] and genetic algorithm for rule-set production [GARP]). Using these methods, we evaluated spatially explicit, bioclimatic and environmental variables as predictors of diatom distribution. The Maxent model provided the most accurate predictions, followed by logistic regression, CART, and GARP. The most suitable habitats were predicted to occur in the western US, in relatively cool sites, and at high elevations with a high base-flow index. The results provide insights into the factors that affect the distribution of D geminata and a spatial basis for the prediction of nuisance blooms. ?? The Ecological Society of America.

Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula

KAUST Repository

Pearson, Gareth A

2015-04-14

Functional genomics of diatom-dominated communities fromthe Antarctic Peninsula was studied using comparative metatranscriptomics. Samples obtained from diatom-rich communities in the Bransfield Strait, the western Weddell Sea and sea ice in the Bellingshausen Sea/Wilkins Ice Shelf yielded more than 500K pyrosequencing reads that were combined to produce a global metatranscriptome assembly. Multi-gene phylogenies recovered three distinct communities, and diatom-assigned contigs further indicated little read-sharing between communities, validating an assembly-based annotation and analysis approach. Although functional analysis recovered a core of abundant shared annotations that were expressed across the three diatom communities, over 40% of annotations (but accounting for <10% of sequences) were community-specific. The two pelagic communities differed in their expression of N-metabolism and acquisition genes, which was almost absent in post-bloom conditions in the Weddell Sea community, while enrichment of transporters for ammonia and urea in Bransfield Strait diatoms suggests a physiological stance towards acquisition of reduced N-sources. The depletion of carbohydrate and energy metabolism pathways in sea ice relative to pelagic communities, together with increased light energy dissipation (via LHCSR proteins), photorespiration, and NO3 - uptake and utilization all pointed to irradiance stress and/or inorganic carbon limitation within sea ice. Ice-binding proteins and cold-shock transcription factors were also enriched in sea ice diatoms. Surprisingly, the abundance of gene transcripts for the translational machinery tracked decreasing environmental temperature across only a 4 °C range, possibly reflecting constraints on translational efficiency and protein production in cold environments. © 2015 International Society for Microbial Ecology All rights reserved.

Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula

KAUST Repository

Pearson, Gareth A; Lago-Leston, Asuncion; Cá novas, Fernando; Cox, Cymon J; Verret, Frederic; Lasternas, Sebastian; Duarte, Carlos M.; Agusti, Susana; Serrã o, Ester A

2015-01-01

Functional genomics of diatom-dominated communities fromthe Antarctic Peninsula was studied using comparative metatranscriptomics. Samples obtained from diatom-rich communities in the Bransfield Strait, the western Weddell Sea and sea ice in the Bellingshausen Sea/Wilkins Ice Shelf yielded more than 500K pyrosequencing reads that were combined to produce a global metatranscriptome assembly. Multi-gene phylogenies recovered three distinct communities, and diatom-assigned contigs further indicated little read-sharing between communities, validating an assembly-based annotation and analysis approach. Although functional analysis recovered a core of abundant shared annotations that were expressed across the three diatom communities, over 40% of annotations (but accounting for <10% of sequences) were community-specific. The two pelagic communities differed in their expression of N-metabolism and acquisition genes, which was almost absent in post-bloom conditions in the Weddell Sea community, while enrichment of transporters for ammonia and urea in Bransfield Strait diatoms suggests a physiological stance towards acquisition of reduced N-sources. The depletion of carbohydrate and energy metabolism pathways in sea ice relative to pelagic communities, together with increased light energy dissipation (via LHCSR proteins), photorespiration, and NO3 - uptake and utilization all pointed to irradiance stress and/or inorganic carbon limitation within sea ice. Ice-binding proteins and cold-shock transcription factors were also enriched in sea ice diatoms. Surprisingly, the abundance of gene transcripts for the translational machinery tracked decreasing environmental temperature across only a 4 °C range, possibly reflecting constraints on translational efficiency and protein production in cold environments. © 2015 International Society for Microbial Ecology All rights reserved.

Thick-shelled, grazer-protected diatoms decouple ocean carbon and silicon cycles in the iron-limited Antarctic Circumpolar Current

Digital Repository Service at National Institute of Oceanography (India)

Assmy, P.; Smetacek, V.; Montresor, M.; Klaas, C.; Henjes, J.; Strass, V.H.; Arrieta, J.M.; Bathmann, U.; Berg, G.M.; Breitbarth, E.; Cisewski, B.; Friedrichs, L.; Fuchs, N.; Herndl, G.J.; Jansen, S.; Kragefsky, S.; Latasa, M.; Peeken, I.; Rottgers, R.; Scharek, R.; Schuller, S.E.; Steigenberger, S.; Webb, A.; Wolf-Gladrow, D.

Trans A Math Phys Eng Sci 366(1882):3947–3967. 35. Smetacek V, et al. (2012) Deep carbon export from a Southern Ocean iron-fertilized diatom bloom. Nature 487(7407):313–319. 36. Assmy P, Henjes J, Klaas C, Smetacek V (2007) Mechanisms determining species...

Chronic Iron Limitation Confers Transient Resistance to Oxidative Stress in Marine Diatoms1

Science.gov (United States)

Graff van Creveld, Shiri; Rosenwasser, Shilo; Vardi, Assaf

2016-01-01

Diatoms are single-celled, photosynthetic, bloom-forming algae that are responsible for at least 20% of global primary production. Nevertheless, more than 30% of the oceans are considered “ocean deserts” due to iron limitation. We used the diatom Phaeodactylum tricornutum as a model system to explore diatom’s response to iron limitation and its interplay with susceptibility to oxidative stress. By analyzing physiological parameters and proteome profiling, we defined two distinct phases: short-term (5 d, phase II) iron limitation. While at phase I no significant changes in physiological parameters were observed, molecular markers for iron starvation, such as Iron Starvation Induced Protein and flavodoxin, were highly up-regulated. At phase II, down-regulation of numerous iron-containing proteins was detected in parallel to reduction in growth rate, chlorophyll content, photosynthetic activity, respiration rate, and antioxidant capacity. Intriguingly, while application of oxidative stress to phase I and II iron-limited cells similarly oxidized the reduced glutathione (GSH) pool, phase II iron limitation exhibited transient resistance to oxidative stress, despite the down regulation of many antioxidant proteins. By comparing proteomic profiles of P. tricornutum under iron limitation and metatranscriptomic data of an iron enrichment experiment conducted in the Pacific Ocean, we propose that iron-limited cells in the natural environment resemble the phase II metabolic state. These results provide insights into the trade-off between optimal growth rate and susceptibility to oxidative stress in the response of diatoms to iron quota in the marine environment. PMID:27503604

Temporal pattern in the bloom-forming macroalgae Chaetomorpha linum and Ulva pertusa in seagrass beds, Swan Lake lagoon, North China

International Nuclear Information System (INIS)

Zhang, Xiaomei; Zhou, Yi; Liu, Peng; Wang, Feng; Liu, Bingjian; Liu, Xujia; Xu, Qiang; Yang, Hongsheng

2014-01-01

Highlights: • We conducted an annual survey of bloom-forming macroalgae in a lagoon. • C. linum biomass reached 1712 ± 780 g DW m −2 at the northern part of the lagoon. • Macroalgae δ 15 N values indicated a land-based source of N enrichment to the blooms. • High nutrient concentrations near the river mouth supported the blooms. • C. linum blooms induced the loss of seagrasses and benthic filter feeders. - Abstract: Seagrasses that are distributed over a large area of the Swan Lake, Weihai, China, support a productive ecosystem. In recent years, however, frequent macroalgal blooms have changed the ecosystem structure and threatened the seagrasses. To understand the bloom-forming macroalgae we conducted a yearly field survey of Swan Lake. Results indicated that the macroalgae Chaetomorpha linum and Ulva pertusa both exhibited a much higher productivity and attained a greater maximum biomass (of 1712 ± 780 g DW m −2 and 1511 ± 555 g DW m −2 , respectively) than was the case for the seagrasses. The mean annual atomic ratios of C/N, C/P and N/P in C. linum were 14.31 ± 4.45, 402.82 ± 130.25, and 28.12 ± 2.08, respectively. The δ 15 N values (11.09 ± 0.91‰ for C. linum; 9.27 ± 2.83‰ for U. pertusa) indicated a land-based source of N enrichment to the macroalgal blooms. High concentrations of nitrogen and phosphorus in the lagoon, particularly near the river mouth, supported the blooms

Effects of pulsed nutrient inputs on phytoplankton assemblage structure and blooms in an enclosed coastal area

Science.gov (United States)

Spatharis, Sofie; Tsirtsis, George; Danielidis, Daniel B.; Chi, Thang Do; Mouillot, David

2007-07-01

The response of phytoplankton assemblage structure to terrestrial nutrient inputs was examined for the Gulf of Kalloni in the Northern Aegean Sea, a productive semi-enclosed coastal marine ecosystem. The study was focused on a typical annual cycle, and emphasis was placed on the comparative analysis between blooms developing after significant nutrient inputs from the watershed, and naturally occurring blooms. Baseline information was collected on a monthly basis from a network of stations located in the oligotrophic open sea and the interior and more productive part of the embayment. Intensive sampling was also carried out along a gradient in the vicinity of a river which was the most important source of freshwater and nutrient input for the Gulf. Phytoplankton assemblage structure was analyzed from 188 samples using diversity indices (Shannon and Average Taxonomic Distinctness), multivariate plotting methods (NMDS), multivariate statistics (PERMANOVA), and canonical correspondence analysis (CCA). Three characteristic assemblages were recognized: (1) an autumn assemblage developed under nutrient depleted conditions, having low diversity due to the dominance of two small diatoms, (2) a winter bloom of the potentially toxic species Pseudo-nitzschia calliantha occurring immediately after a nutrient peak and characterized by very low diversity, and (3) a naturally occurring early summer bloom of centric diatoms with relatively high diversity. The results of the study support the view that moderate nutrient inputs may have a beneficial effect on the functioning of coastal ecosystems, stimulating the taxonomic diversity through the growth of different taxonomic groups and taxa. On the other hand, a sudden pulse of high nutrient concentrations may greatly affect the natural succession of organisms, have a negative effect on the diversity through the dominance of a single species, and can increase the possibility of a harmful algal bloom development.

Interaction of a dinoflagellate neurotoxin with voltage-activated ion channels in a marine diatom.

Science.gov (United States)

Kitchen, Sheila A; Bourdelais, Andrea J; Taylor, Alison R

2018-01-01

The potent neurotoxins produced by the harmful algal bloom species Karenia brevis are activators of sodium voltage-gated channels (VGC) in animals, resulting in altered channel kinetics and membrane hyperexcitability. Recent biophysical and genomic evidence supports widespread presence of homologous sodium (Na + ) and calcium (Ca 2+ ) permeable VGCs in unicellular algae, including marine phytoplankton. We therefore hypothesized that VGCs of these phytoplankton may be an allelopathic target for waterborne neurotoxins produced by K. brevis blooms that could lead to ion channel dysfunction and disruption of signaling in a similar manner to animal Na + VGCs. We examined the interaction of brevetoxin-3 (PbTx-3), a K. brevis neurotoxin, with the Na + /Ca 2+ VGC of the non-toxic diatom Odontella sinensi s using electrophysiology. Single electrode current- and voltage- clamp recordings from O. sinensis in the presence of PbTx-3 were used to examine the toxin's effect on voltage gated Na + /Ca 2+ currents. In silico analysis was used to identify the putative PbTx binding site in the diatoms. We identified Na + /Ca 2+ VCG homologs from the transcriptomes and genomes of 12 diatoms, including three transcripts from O. sinensis and aligned them with site-5 of Na + VGCs, previously identified as the PbTx binding site in animals. Up to 1 µM PbTx had no effect on diatom resting membrane potential or membrane excitability. The kinetics of fast inward Na + /Ca 2+ currents that underlie diatom action potentials were also unaffected. However, the peak inward current was inhibited by 33%, delayed outward current was inhibited by 25%, and reversal potential of the currents shifted positive, indicating a change in permeability of the underlying channels. Sequence analysis showed a lack of conservation of the PbTx binding site in diatom VGC homologs, many of which share molecular features more similar to single-domain bacterial Na + /Ca 2+ VGCs than the 4-domain eukaryote channels

Differential effects of ocean acidification on carbon acquisition in two bloom-forming dinoflagellate species

NARCIS (Netherlands)

Eberlein, T.; Van de Waal, D.B.; Rost, B.

2014-01-01

Dinoflagellates represent a cosmopolitan group of phytoplankton with the ability to form harmful algal blooms. Featuring a Ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO) with very low CO2-affinities, photosynthesis of this group may be particularly prone to carbon limitation and thus

Impact of several harmful algal bloom (HAB) causing species, on life history characteristics of rotifer Brachionus plicatilis Müller

Science.gov (United States)

Lin, Jianing; Yan, Tian; Zhang, Qingchun; Zhou, Mingjiang

2016-07-01

In recent years, harmful algal blooms (HABs) have occurred frequently along the coast of China, and have been exhibiting succession from diatom- to dinoflagellate-dominated blooms. To examine the effects of different diatom and dinoflagellate HABs, the life history parameters of rotifers ( Brachionus plicatilis Müller) were measured after exposure to different concentrations of HAB species. The HAB species examined included a diatom ( Skeletonema costatum) and four dinoflagellates ( Prorocentrum donghaiense, Alexandrium catenella, Prorocentrum lima and Karlodinium veneficum). Compared with the control treatment (CT), the diatom S. costatum showed no adverse impacts on rotifers. Exposure to dinoflagellates at densities equivalent to those measured in the field resulted in a reduction in all the life history parameters measured. This included a reduction in: lifetime egg production (CT: 20.34 eggs/ind.) reduced to 10.11, 3.22, 4.17, 7.16 eggs/ind., life span (CT: 394.53 h) reduced to 261.11, 162.90, 203.67, 196 h, net reproductive rate (CT: 19.51/ind.) reduced to 3.01, 1.26, 3.53, 5.96/ind., finite rate of increase (CT: 1.47/d) reduced to 1.16, 1.03, 1.33, 1.38/d, and intrinsic rate of population increase (CT: 0.39/d) reduced to 0.15, 0.03, 0.28, 0.32/d, for the dinoflagellates P. donghaiense, A. catenella, P. lima and K. veneficum, respectively. The results showed that the diatom S. costatum had no detrimental consequences on the reproduction and growth of B. plicatilis, however, the four dinoflagellates tested did show adverse effects. This suggests that dinoflagellate HABs may suppress microzooplankton, resulting in an increase in algal numbers.

Production of Biodiesel from Lipid of Phytoplankton Chaetoceros calcitrans through Ultrasonic Method

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Kwangdinata, Raymond; Raya, Indah; Zakir, Muhammad

2014-01-01

A research on production of biodiesel from lipid of phytoplankton Chaetoceros calcitrans through ultrasonic method has been done. In this research, we carried out a series of phytoplankton cultures to determine the optimum time of growth and biodiesel synthesis process from phytoplankton lipids. Process of biodiesel synthesis consists of two steps, that is, isolation of phytoplankton lipids and biodiesel synthesis from those lipids. Oil isolation process was carried out by ultrasonic extraction method using ethanol 96%, while biodiesel synthesis was carried out by transesterification reaction using methanol and KOH catalyst under sonication. Weight of biodiesel yield per biomass Chaetoceros calcitrans is 35.35%. Characterization of biodiesel was well carried out in terms of physical properties which are density and viscosity and chemical properties which are FFA content, saponification value, and iodine value. These values meet the American Society for Testing and Materials (ASTM D6751) standard levels, except for the viscosity value which was 1.14 g·cm−3. PMID:24688372

Bloom-Forming Cyanobacteria Support Copepod Reproduction and Development in the Baltic Sea

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Hogfors, Hedvig; Motwani, Nisha H.; Hajdu, Susanna; El-Shehawy, Rehab; Holmborn, Towe; Vehmaa, Anu; Engström-Öst, Jonna; Brutemark, Andreas; Gorokhova, Elena

2014-01-01

It is commonly accepted that summer cyanobacterial blooms cannot be efficiently utilized by grazers due to low nutritional quality and production of toxins; however the evidence for such effects in situ is often contradictory. Using field and experimental observations on Baltic copepods and bloom-forming diazotrophic filamentous cyanobacteria, we show that cyanobacteria may in fact support zooplankton production during summer. To highlight this side of zooplankton-cyanobacteria interactions, we conducted: (1) a field survey investigating linkages between cyanobacteria, reproduction and growth indices in the copepod Acartia tonsa; (2) an experiment testing relationships between ingestion of the cyanobacterium Nodularia spumigena (measured by molecular diet analysis) and organismal responses (oxidative balance, reproduction and development) in the copepod A. bifilosa; and (3) an analysis of long term (1999–2009) data testing relationships between cyanobacteria and growth indices in nauplii of the copepods, Acartia spp. and Eurytemora affinis, in a coastal area of the northern Baltic proper. In the field survey, N. spumigena had positive effects on copepod egg production and egg viability, effectively increasing their viable egg production. By contrast, Aphanizomenon sp. showed a negative relationship with egg viability yet no significant effect on the viable egg production. In the experiment, ingestion of N. spumigena mixed with green algae Brachiomonas submarina had significant positive effects on copepod oxidative balance, egg viability and development of early nauplial stages, whereas egg production was negatively affected. Finally, the long term data analysis identified cyanobacteria as a significant positive predictor for the nauplial growth in Acartia spp. and E. affinis. Taken together, these results suggest that bloom forming diazotrophic cyanobacteria contribute to feeding and reproduction of zooplankton during summer and create a favorable growth

Bloom-forming cyanobacteria support copepod reproduction and development in the Baltic Sea.

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Hogfors, Hedvig; Motwani, Nisha H; Hajdu, Susanna; El-Shehawy, Rehab; Holmborn, Towe; Vehmaa, Anu; Engström-Öst, Jonna; Brutemark, Andreas; Gorokhova, Elena

2014-01-01

It is commonly accepted that summer cyanobacterial blooms cannot be efficiently utilized by grazers due to low nutritional quality and production of toxins; however the evidence for such effects in situ is often contradictory. Using field and experimental observations on Baltic copepods and bloom-forming diazotrophic filamentous cyanobacteria, we show that cyanobacteria may in fact support zooplankton production during summer. To highlight this side of zooplankton-cyanobacteria interactions, we conducted: (1) a field survey investigating linkages between cyanobacteria, reproduction and growth indices in the copepod Acartia tonsa; (2) an experiment testing relationships between ingestion of the cyanobacterium Nodularia spumigena (measured by molecular diet analysis) and organismal responses (oxidative balance, reproduction and development) in the copepod A. bifilosa; and (3) an analysis of long term (1999-2009) data testing relationships between cyanobacteria and growth indices in nauplii of the copepods, Acartia spp. and Eurytemora affinis, in a coastal area of the northern Baltic proper. In the field survey, N. spumigena had positive effects on copepod egg production and egg viability, effectively increasing their viable egg production. By contrast, Aphanizomenon sp. showed a negative relationship with egg viability yet no significant effect on the viable egg production. In the experiment, ingestion of N. spumigena mixed with green algae Brachiomonas submarina had significant positive effects on copepod oxidative balance, egg viability and development of early nauplial stages, whereas egg production was negatively affected. Finally, the long term data analysis identified cyanobacteria as a significant positive predictor for the nauplial growth in Acartia spp. and E. affinis. Taken together, these results suggest that bloom forming diazotrophic cyanobacteria contribute to feeding and reproduction of zooplankton during summer and create a favorable growth

Importance of a winter dinoflagellate-microflagellate bloom in the Patuxent River estuary

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Sellner, K. G.; Lacouture, R. V.; Cibik, S. J.; Brindley, A.; Brownlee, S. G.

1991-01-01

A dense bloom of Katodinium rotundatum was observed in the Patuxent River estuary from December to February 1989. The dinoflagellate dominated phytoplankton densities reaching 10 8 cells l -1 and contributed up to 1900 μgC l -1 in near-surface depths. The bloom maintained a distinct patch extending over 10-25 km of the estuary or approximately one-third to one-half of the total estuary (salinities from 5-13 ppt) and was restricted to regions immediately upriver of the transition between the shallow upriver (3-4 m) and deeper lower estuary (10 m). Daily measurements collected in the primary bloom area at the same time each day in the study area indicated 80- and 120-fold variations in chlorophyll and cell densities from day to day. Densities of potential grazers in the region were high with rotifers, primarily Synchaeta baltica, reaching densities of 1000 l -1 in early winter, and the copepod Eurytemora affinis reaching levels exceeding 1·15 × 10 5 m -3 in February. Estimates of grazing pressure by these planktonic herbivores indicated substantial grazing losses for the bloom, with up to 67% of bloom biomass consumed day -1 in February. Nutrient concentrations and ratios of N/P during the bloom suggested potentially N-limited conditions; bloom demise was coincident with a shift to high N/P ratios and high river flows. These data as well as other historical data suggest that dinoflagellate blooms in the lower Patuxent River estuary could be the primary source of carbon to the system during the winter and supply a large reservoir of labile organic matter to planktonic secondary producers prior to annual spring diatom blooms in the region.

Jellyfish blooms in China: Dominant species, causes and consequences

International Nuclear Information System (INIS)

Dong Zhijun; Liu Dongyan; Keesing, John K.

2010-01-01

Three jellyfish species, Aurelia aurita, Cyanea nozakii and Nemopilema nomurai, form large blooms in Chinese seas. We report on the distribution and increasing incidence of jellyfish blooms and their consequences in Chinese coastal seas and analyze their relationship to anthropogenically derived changes to the environment in order to determine the possible causes. A. aurita, C. nozakii and N. nomurai form blooms in the temperate Chinese seas including the northern East China Sea, Yellow Sea and Bohai Sea. N. nomurai forms offshore blooms while the other two species bloom mainly in inshore areas. Eutrophication, overfishing, habitat modification for aquaculture and climate change are all possible contributory factors facilitating plausible mechanisms for the proliferation of jellyfish blooms. In the absence of improvement in coastal marine ecosystem health, jellyfish blooms could be sustained and may even spread from the locations in which they now occur.

Acclimation of bloom-forming and perennial seaweeds to elevated pCO2 conserved across levels of environmental complexity.

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Xu, Dong; Schaum, Charlotte-Elisa; Lin, Fan; Sun, Ke; Munroe, James R; Zhang, Xiao W; Fan, Xiao; Teng, Lin H; Wang, Yi T; Zhuang, Zhi M; Ye, Naihao

2017-11-01

Macroalgae contribute approximately 15% of the primary productivity in coastal marine ecosystems, fix up to 27.4 Tg of carbon per year, and provide important structural components for life in coastal waters. Despite this ecological and commercial importance, direct measurements and comparisons of the short-term responses to elevated pCO 2 in seaweeds with different life-history strategies are scarce. Here, we cultured several seaweed species (bloom forming/nonbloom forming/perennial/annual) in the laboratory, in tanks in an indoor mesocosm facility, and in coastal mesocosms under pCO 2 levels ranging from 400 to 2,000 μatm. We find that, across all scales of the experimental setup, ephemeral species of the genus Ulva increase their photosynthesis and growth rates in response to elevated pCO 2 the most, whereas longer-lived perennial species show a smaller increase or a decrease. These differences in short-term growth and photosynthesis rates are likely to give bloom-forming green seaweeds a competitive advantage in mixed communities, and our results thus suggest that coastal seaweed assemblages in eutrophic waters may undergo an initial shift toward communities dominated by bloom-forming, short-lived seaweeds. © 2017 John Wiley & Sons Ltd.

Physical and Biogeochemical Controls of the Phytoplankton Blooms in North Western Mediterranean Sea: A Multiplatform Approach Over a Complete Annual Cycle (2012-2013 DEWEX Experiment)

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Mayot, Nicolas; D'Ortenzio, Fabrizio; Taillandier, Vincent; Prieur, Louis; de Fommervault, Orens Pasqueron; Claustre, Hervé; Bosse, Anthony; Testor, Pierre; Conan, Pascal

2017-12-01

The North Western Mediterranean Sea exhibits recurrent and significant autumnal and spring phytoplankton blooms. The existence of these two blooms coincides with typical temperate dynamics. To determine the potential control of physical and biogeochemical factors on these phytoplankton blooms, data from a multiplatform approach (combining ships, Argo and BGC-Argo floats, and bio-optical gliders) were analyzed in association with satellite observations in 2012-2013. The satellite framework allowed a simultaneous analysis over the whole annual cycle of in situ observations of mixed layer depth, photosynthetical available radiation, particle backscattering, nutrients (nitrate and silicate), and chlorophyll-a concentrations. During the year 2012-2013, satellite ocean color observations, confirmed by in situ data, have revealed the existence of two areas (or bioregions) with comparable autumnal blooms but contrasting spring blooms. In both bioregions, the ratio of the euphotic zone (defined as the isolume 0.415 mol photons m-2 d-1, Z0.415) and the MLD identified the initiation of the autumnal bloom, as well as the maximal annual increase in [Chl-a] in spring. In fact, the autumnal phytoplankton bloom might be initiated by mixing of the summer shallowing deep chlorophyll maximum, while the spring restratification (when Z0.415/MLD ratio became >1) might induce surface phytoplankton production that largely overcomes the losses. Finally, winter deep convection events that took place in one of the bioregions induced higher net accumulation rate of phytoplankton in spring associated with a diatom-dominated phytoplankton community principally. We suggest that very deep winter MLD lead to an increase in surface silicates availability, which favored the development of diatoms.

Holocene neoglacial events in the Bransfield Strait (Antarctica. Palaeocenographic and paleoclimatic significance

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María Ángeles Bárcena

2006-12-01

Full Text Available Geochemical analysis, micropalaeontological analysis and radiometric dating techniques were performed on four gravity cores, G-1, G-2, A-3 and A-6, recovered during the BIO Hesperides expeditions GEBRA-93 and FRUELA-96 from the Bransfield Strait (Antarctica. Moreover, in order to improve the sedimentation rate control we tentatively relate abundance variations in the sea-ice taxa group (SITG to air temperature estimations based on Deuterium contents in Vostok ice-core. The results of diatom analyses were related to the sequence of neoglacial events that have occurred over the last three millennia. For these periods, a restricted communication between the Weddell, Bransfield and Bellingshausen seas has been proposed. The abundance patterns of diatom valves, resting spores (RS of the diatom Chaetoceros and opal content agree with the high productivity values previously reported for the area. The significant reduction Chaetoceros RS towards the present is interpreted as a reduction in surface productivity. Trend differences between Chaetoceros RS and TOC contents are explained in terms of organic matter preservation. Diatom communities from the Bransfield Strait did not play an important role in the global CO2 cycle during cold periods. Bio- and geochemical changes have overprinted high frequency cyclicity at about 200-300 yr, which might be related to the 200-yr solar cycle.

Use of secondary sewage water as a culture medium for Chaetoceros gracilis and Thalassiosira Sp (Chrysophyceae in laboratory conditions

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Rauquírio André Albuquerque Marinho da Costa

1999-01-01

Full Text Available Experiments were carried out in order to test the efficiency of additions of secondary sewage as a culture medium for Chaetoceros gracilis and Thalassiosira sp (Chrysophyceae under laboratory conditions. These algae were cultivated in sea water with concentrations of 10%, 20%, 30% and 40% of wastewater. The results were compared with those obtained by the nutritive medium f2 of Guillard (1975. The best results in terms of cellular densities were observed at 40% additions. There were significant differences (significance levels of 5% between the nutritive medium f2 and the 40% additions for both the species. Maximum cellular densities observed for all additions tested were, 4,125.00 x 10³ cells/ml for Chaetoceros gracilis on the ninth day and 834.00 x 10³ cells/ml for Thalassiosira sp on the fifth day. Biomass was higher in the nutritive medium f2 than in the other treatments, reaching average values of 2,363μg/ml for Chaetoceros gracilis. At all experimental units, the best results were registered at 40% addition for Chaetoceros gracilis, where average values of 0.768μg/ml were observed on the fifth day, and at 30% additions for Thalassiosira sp where 0.883μg/ml were observed on the thirteenth day. It was concluded that secondary sewage could be used as a culture medium for the species tested here, after large scale tests.

The impacts of a massive harmful algal bloom along the US west coast in 2015

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Kudela, R. M.; Trainer, V. L.; McCabe, R. M.; Hickey, B. M.; Negrey, K.

2016-02-01

In 2015, a massive bloom of the marine diatom Pseudo-nitzschia, stretching from southern California to southern Alaska, resulted in significant impacts to coastal resources and marine life. This bloom was first detected in early May 2015, when Washington closed its scheduled razor clam digs on coastal beaches. It is the largest and longest-lasting bloom in at least the past 15 years, and concentrations of domoic acid in seawater, some forage fish, and crab samples have been among the highest ever reported for this region. By mid-May, domoic acid concentrations in Monterey Bay, California were 10 to 30 times the level that would be considered high for a normal Pseudo-nitzschia bloom. Impacts to coastal communities and marine life include shellfish and Dungeness crab closures in multiple states, impacting commercial, recreational and subsistence harvesters, anchovy and sardine fishery health advisories in some areas of California, and sea lion strandings in California and Washington. Other marine mammal and bird mortalities have been reported in multiple states, and domoic acid poisoning is a suspected cause. In addition to the spatial extent and toxicity, the bloom has also lasted for many months (ongoing as of September 2015). While the exact causes of the bloom's severity and early onset are not yet known, unusually warm surface water in the Pacific Ocean may be a contributing factor. Here we present an overview of the bloom dynamics and impacts, and preliminary analysis about the bloom initiation and relationship to unusual ocean conditions in 2014-2015.

The Community Structure of Phytoplankton in Seagrass Ecosystem and its Relationship with Environmental Characterstics

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Gede Iwan Setiabudi

2016-12-01

Full Text Available The aimed of this study was to determine  the plankton communities and its relationship with the chemical and physical condition in seagrass ecosystem at Pegametan Bay. The composition and abundance of plankton were observed in the sea water underneath the surface and were identified based on the guideline of Illustration of the Marine Plankton of Japan. The water quality was measured in situ using WQC HI 9829. The water sample was measured using closed reflux spectrometry for COD, TOC analyzer for DOC and APHA 2102 (4500 method for Nt and Pt. There are 27 species of plankton identified, which can be classified into three groups. Diatom group consists of 18 species with a 74.56% abundance. The non-litoral group consists of 6 species with a 23.35% abundance. Moreover, dinoflagellate group consist of 3 species with a 2.09% abundance. An abundance of plankton greater than 104 cell.L-1 was found in diatome group (Nitzschia sp., Thalassiosira sp., Chaetoceros sp., Flagillaria sp., Thalassiothrix sp., and Melosira sp. and non-litoral group (Oscillatoria sp. and Spirogyra sp.. The abundance of those species indicated the algae bloom phenomenon. Dinophysis sp. was also identified, which was harmful algal blooms.How to CiteSetiabudi, G. I., Bengen, D. G., Effendi, H., & Radjasa, O. K. (2016. The Community Structure of Phytoplankton in Seagrass Ecosystem and its Relationship with Environmental Characterstics. Biosaintifika: Journal of Biology & Biology Education, 8(3, 257-269.

Environmental controls on spatial variability of summer phytoplankton structure and biomass in the Bering Sea

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Wang, Yu; Xiang, Peng; Kang, Jian-hua; Ye, You-yin; Lin, Geng-ming; Yang, Qing-liang; Lin, Mao

2018-01-01

the community was mainly dominated by Thalassiosira nordenskiöldii, Leptocylindrus danicus, Chaetoceros socialis, Chaetoceros debilis, Fragilariopsis oceanica, Nitzschia closterium and Chaetoceros furcellatus. A diatom bloom was observed near the Bering Strait in the summer of 2010 induced by high availability of nitrate particularly in the Bering Shelf, while water mass transportation mainly influenced communities in the Bering Basin and Slope. The observed fluctuation in both biomass and summer phytoplankton communities in the Bering Sea were mostly influenced by events related to the spring sea ice retreat in 2010.

Changes in phytoplankton composition in response to tides, wind-induced mixing conditions, and freshwater outflows in an urbanised estuarine complex.

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Moser, G A O; Ciotti, A M; Giannini, M F C; Tonini, R T; Harari, J

2012-02-01

Recent reports have shown an increase in potentially harmful phytoplankton in Santos bay (Southeastern Brazilian Coast), located in a highly urbanised estuarine complex. Prediction of blooms is, thus, essential but the phytoplankton community structure in very dynamic regions is difficult to determine. In the present work, we discriminate bloom forming microphytoplankton dominance and their relationship to physical and meteorological variables to look for patterns observed in different tides and seasons. Comparing 8 distinct situations, we found five scenarios of dominance that could be related to winds, tides and rainfall: i) Surfers, diatoms occurring during high surf zone energies; ii) Sinkers, represented by larger celled diatoms during spring tide, after periods of high precipitation rates; iii) Opportunistic mixers, composed of chain forming diatoms with small or elongate cells occurring during neap tides; iv) Local mixers, microplanktonic diatoms and dinoflagellates which occurred throughout the 298 sampling stations; and v) Mixotrophic dinoflagellates, after intense estuarine discharges. Results suggest alterations in the temporal patterns for some bloom-forming species, while others appeared in abundances above safe limits for public health. This approach can also illustrate possible impacts of changes in freshwater discharge in highly urbanised estuaries.

Dust fluxes linked to intensification of Prevailing Westerlies and Trade Winds stimulated Ethmodiscus rex giant diatom blooms in the southern Mariana Trench, western tropical Pacific at onset of the Last Glacial Maximum

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Chen, D.; Luo, M.; Algeo, T. J.; Chen, L.

2017-12-01

The strontium (Sr) and neodymium (Nd) isotope compositions and clay-mineral assemblages of the detrital fraction of sediments in the southern Mariana Trench together with major- and trace-elements concentrations of bulk sediments have been determined to trace the sediment provenance and investigate the relationship between Asian dust input and blooms of the giant diatom Ethmodiscus rex. Enrichment of barium (Ba) in relative to upper continental crust (UCC) and low average Rb/K ratios in all study cores point to both hydrothermal and volcaniclastic inputs to the sediments. Both the Sr-Nd isotope compositions and the clay-mineral assemblages of the detrital fraction reflect a two-component mixing system consisting of Mariana arc volcaniclastics and eolian Asian dust. A decrease in smectite content and an increase in illite content just before formation of laminated diatom mats (LDMs) suggest a change in the source of the eolian dust from eastern Asian deserts (EADs) to central Asian deserts (CADs) at the onset of the Last Glacial Maximum (LGM). This observation suggests a causal linkage between atmospheric circulation patterns, the sources of eolian Asian dust, and marine productivity in the western Pacific region. We postulate that the shift to CAD-sourced dust may have played a greater role in promoting biological productivity in the oligotrophic western Pacific Ocean during the LGM than previously realized.

An unusual early Holocene diatom event north of the Getz Ice Shelf (Amundsen Sea): Implications for West Antarctic Ice Sheet development

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Esper, O.; Gersonde, R.; Hillenbrand, C.; Kuhn, G.; Smith, J.

2011-12-01

Modern global change affects not only the polar north but also, and to increasing extent, the southern high latitudes, especially the Antarctic regions covered by the West Antarctic Ice Sheet (WAIS). Consequently, knowledge of the mechanisms controlling past WAIS dynamics and WAIS behaviour at the last deglaciation is critical to predict its development in a future warming world. Geological and palaeobiological information from major drainage areas of the WAIS, like the Amundsen Sea Embayment, shed light on the history of the WAIS glaciers. Sediment records obtained from a deep inner shelf basin north of Getz Ice Shelf document a deglacial warming in three phases. Above a glacial diamicton and a sediment package barren of microfossils that document sediment deposition by grounded ice and below an ice shelf or perennial sea ice cover (possibly fast ice), respectively, a sediment section with diatom assemblages dominated by sea ice taxa indicates ice shelf retreat and seasonal ice-free conditions. This conclusion is supported by diatom-based summer temperature reconstructions. The early retreat was followed by a phase, when exceptional diatom ooze was deposited around 12,500 cal. years B.P. [1]. Microscopical inspection of this ooze revealed excellent preservation of diatom frustules of the species Corethron pennatum together with vegetative Chaetoceros, thus an assemblage usually not preserved in the sedimentary record. Sediments succeeding this section contain diatom assemblages indicating rather constant Holocene cold water conditions with seasonal sea ice. The deposition of the diatom ooze can be related to changes in hydrographic conditions including strong advection of nutrients. However, sediment focussing in the partly steep inner shelf basins cannot be excluded as a factor enhancing the thickness of the ooze deposits. It is not only the presence of the diatom ooze but also the exceptional preservation and the species composition of the diatom assemblage

Culturing Toxic Benthic Blooms: The Fate of Natural Biofilms in a Microcosm System

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Francesca Di Pippo

2017-08-01

Full Text Available A microcosm designed for culturing aquatic phototrophic biofilms on artificial substrata was used to perform experiments with microphytobenthos sampled during summer toxic outbreaks of Ostreopsis cf. ovata along the Middle Tyrrhenian coast. This dynamic approach aimed at exploring the unique and complex nature of O. cf. ovata bloom development in the benthic system. Epibenthic assemblages were used as inocula for co-cultures of bloom organisms on polycarbonate slides at controlled environmental conditions. Biofilm surface adhesion, growth, and spatial structure were evaluated along with shifts in composition and matrix production in a low disturbance regime, simulating source habitat. Initial adhesion and substratum colonisation appeared as stochastic processes, then community structure and physiognomy markedly changed with time. Dominance of filamentous cyanobacteria and diatoms, and dense clusters of Amphidinium cf. carterae at the mature biofilm phases, were recorded by light and confocal microscopy, whilst O. cf. ovata growth was visibly limited in the late culture phases. Life-form strategies, competitiveness for resources, and possibly allelopathic interactions shaped biofilm structure during culture growth. HPLC (High Performance Liquid Chromatography analysis of exopolysaccharidic matrix revealed variations in sugar total amounts and composition. No toxic compounds were detected in the final communities tested by LC-MS (Liquid Chromatography- Mass Spectrometry and MALDI-TOF MS (Matrix Assisted Laser Desorption Ionization Time OF Flight Mass Spectroscopy techniques.

Diatoms and the nanotechnology

International Nuclear Information System (INIS)

Toekesi, K.; Bereczky, R.J.; Lakatos, Gy.; Cserhati, C.

2004-01-01

Complete text of publication follows. During the last decade studies of interactions between highly charged ions (HCI) and solid surfaces are at the center of interest which is partly stimulated by potential future technical application such as nanofabrication. The investigation of the interactions of highly charged ions with internal surfaces recently become available due to the advances in the fabrication of micro- and nanocapillaries. These target materials offer the opportunity to observe 'hollow atom' formation in free space. Hollow atoms are an exotic form of matter where the atomic charge cloud resides in shells with large diameters while the core is virtually empty. In the past there has been an increasing amount of indirect evidence for the existence of this atomic state. Microcapillary transmission promises to provide direct evidence for the hollow atom formation for the first time. Our earlier theoretical descriptions rely on metallic microcapillaries which have proven to be quite successful in comparison with experimental data. However, since very detailed measurements have recently become available for insulator nanocapillaries, critical and precise tests of theory are only now being possible. We note, that the theoretical description of the interaction between the HCI and insulator nanocapillaries is far from being well understood. One of the key point of the experimental investigations is the preparation of the nanocapillaries. In this work we propose an alternative way to prepare insulator nanocapillaries. We take an advantage of the nature that during the evolution the cylindrical shape nanostructure was developed as a truss of diatoms. The truss of the diatoms contains roughly 99 % SiO 2 and in some cases of diatoms it form almost ideal cylindrical shape. As an example Fig. 1 shows the scanning electron micrograph of the diatom. The size of the holes in the truss are in the nanometer range (see Fig. 1a). On the basis of these properties the

Molecular Characterisation and Co-cultivation of Bacterial Biofilm Communities Associated with the Mat-Forming Diatom Didymosphenia geminata.

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Brandes, Josephin; Kuhajek, Jeanne M; Goodwin, Eric; Wood, Susanna A

2016-10-01

Didymosphenia geminata (Lyngbye) M. Schmidt is a stalked freshwater diatom that is expanding its range globally. In some rivers, D. geminata forms thick and expansive polysaccharide-dominated mats. Like other stalked diatoms, D. geminata cells attach to the substratum with a pad of adhesive extracellular polymeric substance. Research on D. geminata and other diatoms suggests that bacterial biofilm composition may contribute to successful attachment. The aim of this study was to investigate the composition and role of bacterial biofilm communities in D. geminata attachment and survival. Bacterial biofilms were collected at four sites in the main stem of a river (containing D. geminata) and in four tributaries (free of D. geminata). Samples were characterised using automated rRNA intergenic spacer analysis and high-throughput sequencing (HTS). Mat-associated bacteria were isolated and their effect on the early establishment of D. geminata cells assessed using co-culturing experiments. ARISA and HTS data showed differences in bacterial communities between samples with and without D. geminata at two of the four sites. Samples with D. geminata had a higher relative abundance of Sphingobacteria (p geminata reduced survival (p geminata. Attachment was enhanced by Micrococcus sp. and Pseudomonas sp. (p geminata, and may partly explain observed distribution patterns.

Physical Processes Affecting the Distribution of Diydymosphenia Geminata Biomass Bloom in Rapid Creek, South Dakota

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Abessa, M. B.; Sundareshwar, P. V.; Updhayay, S.

2010-12-01

Didymosphenia geminata is a freshwater diatom that has invaded and colonized many of the world’s oligotrophic streams and rivers, including Rapid Creek in Western South Dakota - a perennial oligotrophic stream that emerges from the Black Hills and is fed by cold water release from the Pactola Reservoir. Since 2002, D. geminata blooms have been observed in certain stretches of the Rapid Creek. These massive blooms are localized to certain segments of the Creek where the flow is mainly slow, stable and shallow dominated by boulder type bed material and submerged large woody debris. Water chemistry data from this Creek showed the variability of major nutrients such as phosphate, nitrates/nitrites and ammonium are insignificant across our study sites while the nature of the stream flow is quite irregular. We measured flow rates, depth, temperature, stream bed characteristics, water chemistry, and D. geminata biomass in regions with and without blooms. The presentation will discuss how changes in physical parameters along the various reaches of the Creek impact the biomass distribution of this invasive alga.

Recent findings regarding non-native or poorly known diatom taxa in north-western Italian rivers

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Elisa Falasco

2013-02-01

Full Text Available Diatoms of the major rivers of North-Western Italy were investigated to highlight the presence of species of particular ecological interest but not as yet recorded. The survey area included streams belonging to seven different hydroecoregions (HERs with a wide range of physical characteristics. Between 2008 and 2010, 200 samples were taken for the study of the diatom community composition, while a larger set of samples was examined to determine the presence or absence of the nuisance diatom species Didymosphenia geminata (Lyngbye Schmidt. A specific field study was performed in two rivers characterized by persistent blooms of this species to evaluate the effects of its proliferation on the benthic communities. D. geminata was present in almost 20% of the samples. From a comparison with published data, we can confirm that D. geminata has recently been expanding its ecological range, as it has been found also in mesotrophic lowlands water. In some instances the formation of massive proliferation has been recorded. The calculation of autecological values confirmed its preference for oligotrophic waters with low mineral content and organic loading, although with a wider ecological amplitude than recorded in the first studies on this species. Another four taxa of particular interest were detected: Achnanthidium subhudsonis (Hustedt Kobayasi (in 15 sites, Cymbella tropica Krammer (11 sites, Mayamaea cahabaensis Morales and Manoylov (2 sites and Reimeria uniseriata Sala, Guerrero and Ferrario (18 sites. The first three species must be considered new records for Northern Italy. A. subhudsonis and C. tropica reached up to 20% relative abundance. From the analysis of their distribution and autecological values, we can assert that A. subhudsonis and M. cahabaensis show a preference for high values of nitrogen, this latter preferring also quite high values of total phosphorus. C. tropica prefers intermediate values of nitrogen nutrients and R. uniseriata is

Bioactive glass 45S5 from diatom biosilica

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Luqman A. Adams

2017-12-01

Full Text Available A major draw-back to large scale production of bioactive glasses is the high cost of the standard silica precursor, usually tetraethyl orthosilicate (TEOS. The current study describes a novel sol–gel preparation of 45S5 bioactive glass using diatom biosilica from cultured cells of the diatom, Aulacoseira granulata as substitute to TEOS. The glass formed was characterized using mechanical tester, scanning electron microscopy (SEM, energy dispersive X-ray analysis (EDX, X-ray diffraction (XRD and Fourier transform infrared (FTIR spectroscopy. Results showed that the glass possessed a compressive strength of 3.75 ± 0.18 and formed carbonated hydroxyapatite (HCA within 7 days in simulated body fluid (SBF, attributable to good surface chemistry. The performance of the glass was compared with that of those formed using TEOS. Diatom biosilica could be a potential economically friendly starting material for large scale fabrication of bioactive glasses.

Influence of Didymosphenia geminata blooms on prey composition and associated diet and growth of Brown Trout

Science.gov (United States)

James, Daniel A.; Chipps, Steven R.

2016-01-01

We compared diet, stomach fullness, condition, and growth of Brown Trout Salmo trutta among streams with or without blooms of the benthic diatom Didymosphenia geminata in the Black Hills, South Dakota. In Rapid Creek, where D. geminata blooms covered ∼30% of the stream bottom, Brown Trout consumed fewer ephemeropterans (6–8% by weight) than individuals from two stream sections that have not had D. geminatablooms (Castle and Spearfish creeks; 13–39% by weight). In contrast, dipterans (primarily Chironomidae) represented a larger percentage of Brown Trout diets from Rapid Creek (D. geminata blooms present; 16–28% dry weight) compared with diets of trout from streams without D. geminata blooms (6–19% dry weight). Diets of small Brown Trout (100–199 mm TL) reflected the invertebrate species composition in benthic stream samples; in Rapid Creek, ephemeropterans were less abundant whereas dipterans were more abundant than in streams without D. geminata blooms. Stomach fullness and condition of Brown Trout from Rapid Creek were generally greater than those of Brown Trout from other populations. Linkages among invertebrate availability, diet composition, and condition of Brown Trout support the hypothesis that changes in invertebrate assemblages associated with D. geminata (i.e., more Chironomidae) could be contributing to high recruitment success for small Brown Trout in Rapid Creek.

A First Look at Oxygen and Silicon Isotope Variations in Diatom Silica from a Pliocene Antarctic Marine Sediment Core

Science.gov (United States)

Abbott, T.; Dodd, J. P.; Hackett, H.; Scherer, R. P.

2016-02-01

Coupled oxygen (δ18O) and silicon (δ30Si) isotope variations in diatom silica (opal-A) are increasingly used as a proxy to reconstruct paleoenvironmental conditions (water temperatures, water mass mixing, nutrient cycling) in marine environments. Diatom silica is a particularly significant paleoenvironmental proxy in high latitude environments, such as the Southern Ocean, where diatom blooms are abundant and diatom frustules are well preserved in the sediment. The Andrill-1B (AND-1B) sediment core from the Ross Sea (Antarctica) preserves several Pliocene ( 4.5 Ma) age diatomite units. Here we present preliminary δ18O and δ30Si values for a diatomite subunit in the AND-1B sediment core. Initial isotope values for the AND-1B diatoms silica record relatively high variability (range δ18O: 36.3‰ to 39.9‰) that could be interpreted as large-scale changes in the water temperature and/or freshwater mixing in the Ross Sea; however, a significant concern with marine sediment of this age is isotope fractionation during diagenesis and the potential formation of opal-CT lepispheres. The effects of clay contamination on the diatom silica δ18O values have been addressed through sample purification and quantified through chemical and physical analyses of the diatom silica. The isotopic effects of opal-CT are not as clearly understood and more difficult to physically separate from the primary diatom silica. In order to better understand the isotope variations in the AND-1B diatoms, we also evaluated silicon and oxygen isotope fractionation during the transition from opal-A to opal-CT in a controlled laboratory experiment. Opal-A from cultured marine diatoms (Thalassiosira weissflogii) was subjected to elevated temperatures (150°C) in acid digestion vessels for 4 weeks to initiate opal-CT precipitation. Quantifying the effects of opal-CT formation on δ18O and δ30Si variations in biogenic silica improves our understanding of the use of diatom silica isotope values a

First record of the invasive diatom Didymosphenia geminata (Lyngbye) Schmidt in a Patagonian Andean river of Argentina

OpenAIRE

Sastre, Alicia Viviana; Santinelli, Norma Herminia; Bauer, Gabriel A.; Ayesterán, M. Gabriel; Uyua, Noelia Mariel

2017-01-01

The Futaleufú River, Argentina, was monitored monthly from June 2010 to August 2011, in order to detect the invasive diatom Didymosphenia geminata, which was previously observed in Chile. Plankton and periphyton samples were taken from 10 sites. Didymosphenia geminata was not found until late winter. In August 2010, the species was first detected at isolated points of the river but in spring and summer the algal coverage extended along several kilometers. The coverage of blooms, spread to dee...

Soliton solutions in a diatomic lattice system

International Nuclear Information System (INIS)

Yajima, Nobuo; Satsuma, Junkichi.

1979-04-01

A continuum limit is considered for a diatomic lattice system with a cubic nonlinearity. A long wave equation describing the interaction of acoustic and optical modes is obtained. It reduces, in certain approximations, to equations having coupled wave solutions. The solutions exhibit trapping of an optical mode by an acoustic soliton. The form of the trapped optical wave depends on the mass ratio of adjacent particles in the diatomic lattice. (author)

Allelopathic and Bloom-Forming Picocyanobacteria in a Changing World

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Sylwia Śliwińska-Wilczewska

2018-01-01

Full Text Available Picocyanobacteria are extremely important organisms in the world’s oceans and freshwater ecosystems. They play an essential role in primary production and their domination in phytoplankton biomass is common in both oligotrophic and eutrophic waters. Their role is expected to become even more relevant with the effect of climate change. However, this group of photoautotrophic organisms still remains insufficiently recognized. Only a few works have focused in detail on the occurrence of massive blooms of picocyanobacteria, their toxicity and allelopathic activity. Filling the gap in our knowledge about the mechanisms involved in the proliferation of these organisms could provide a better understanding of aquatic environments. In this review, we gathered and described recent information about allelopathic activity of picocyanobacteria and occurrence of their massive blooms in many aquatic ecosystems. We also examined the relationships between climate change and representative picocyanobacterial genera from freshwater, brackish and marine ecosystems. This work emphasizes the importance of studying the smallest picoplanktonic fractions of cyanobacteria.

Mesoscale distribution of dominant diatom species relative to the hydrographical field along the Antarctic Polar Front

Science.gov (United States)

Smetacek, Victor; Klaas, Christine; Menden-Deuer, Susanne; Rynearson, Tatiana A.

The quantitative distribution of dominant phytoplankton species was mapped at high spatial resolution (15 km spacing) during a quasi-synoptic, mesoscale survey of hydrographical, chemical, pigment, and zooplankton fields carried out along the Antarctic Polar Front within a grid 140×130 km 2 during austral summer. A rapid assessment method for quantifying phytoplankton species by microscopy in concentrated samples on board enabled estimation of total biomass and that of dominant species at hourly sampling intervals. The biomass distribution pattern derived from this method was remarkably coherent and correlated very well with chlorophyll concentrations and the location of different water masses covered by the grid. A "background" chlorophyll concentration of 0.5 mg m -3 in the grid could be assigned to the uniformly distributed pico- and nanophytoplankton; all higher values (up to 2.0 mg m -3) were contributed by large diatoms. Three species complexes ( Chaetoceros atlanticus/dichaeta, Pseudo-nitzschia cf. Lineola, and Thalassiothrix antarctica) contributed about one-third each to the biomass. Although all species were found throughout the study area, distinct patterns in abundance emerged: The Thalassiothrix maximum was located north of the frontal jet, Chaetoceros biomass was highest along the jet, and Pseudo-nitzschia was the most uniformly distributed of the three taxa. Since the meridional pattern of biomass and species composition persisted for about 5 weeks, despite heavy grazing pressure of small copepods, we hypothesize that the dominant species reflect the highest degree of grazer protection in the assemblage. This is accomplished by large size, needle-shaped cells, and long spines armed with barbs. We suggest that these persistent species sequester the limiting nutrient—iron—from the assemblage of smaller, less-defended species that must hence have higher turn-over rates.

The impact of food type, temperature and starvation on larval development of Balanus amphitrite Darwin (Cirripedia: Thoracica)

Digital Repository Service at National Institute of Oceanography (India)

Desai, D.V.; Anil, A.C.

The impact of diatom food species (Chaetoceros calcitrans and Skeletonema costatum), temperature and starvation on the larval development of Balanus amphitrite was evaluated. Starvation threshold levels for different ages of larvae (0- to 5-day...

Early spawning of Antarctic krill in the Scotia Sea is fuelled by “superfluous” feeding on non-ice associated phytoplankton blooms

Science.gov (United States)

Schmidt, Katrin; Atkinson, Angus; Venables, Hugh J.; Pond, David W.

2012-01-01

The spawning success of Antarctic krill ( Euphausia superba) is generally assumed to depend on substantial winter sea ice extent, as ice biota can serve as a food source during winter/spring and the seasonal ice melt conditions the upper water column for extensive phytoplankton blooms. However, direct observations during spring are rare. Here we studied krill body condition and maturity stage in relation to feeding (i.e. stomach fullness, diet, absorption of individual fatty acids and defecation rate) across the Scotia Sea in November 2006. The phytoplankton concentrations were low at the marginal ice zone (MIZ) in the southern Scotia Sea (Stn. 1, 2, and 3), high in open waters of the Southern Antarctic Circumpolar Current Front (SACCF) in the central Scotia Sea (Stn. 5), and moderate further north (Stn. 6 and 7). Krill had low lipid reserves (˜6.5% of dry mass, DM), low mass:length ratios (˜1.7 mg DM mm -1), and small digestive glands (˜7% of total DM) near the ice edge. The stomachs contained lithogenic particles, diatom debris, and bacterial fatty acids, but low proportions of diatom-indicating fatty acids, which suggest that these krill were feeding on detritus rather than on fresh ice algae. In the SACCF, krill had higher lipid reserves (˜10% of DM), high mass:length ratios (˜2.2 mg DM mm -1), and large digestive glands (˜16% of total DM). Stomach content and tissue composition indicate feeding on diatoms. In the north, moderate food concentrations co-occurred with low lipid reserves in krill, and moderate mass:length ratios and digestive gland sizes. Only in the phytoplankton bloom in the SACCF had the mating season already started and some females were about to spawn. Based on the way krill processed their food at the different stations, we indicate two mechanisms that can lead to fast regeneration of body reserves and oocyte maturation in E. superba. One is "superfluous" feeding at high food concentrations, which maximises the overall nutrient gain

Biophotonics of diatoms

DEFF Research Database (Denmark)

Gössling, Johannes Wilhelm

Diatoms are unicellular microalgae present in all aquatic environments on earth. Due to their high photosynthetic productivity and abundance, diatoms are main components of aquatic food webs and among the main contributors of global photosynthetic carbon fixation. A unique feature of diatoms...

Assessment of the phytochemical constituents and antioxidant activity of a bloom forming microalgae Euglena tuba

OpenAIRE

Chaudhuri, Dipankar; Ghate, Nikhil Baban; Deb, Shampa; Panja, Sourav; Sarkar, Rhitajit; Rout, Jayashree; Mandal, Nripendranath

2014-01-01

BACKGROUND: Unstable generation of free radicals in the body are responsible for many degenerative diseases. A bloom forming algae Euglena tuba growing abundantly in the aquatic habitats of Cachar district in the state of Assam in North-East India was analysed for its phytochemical contents, antioxidant activity as well as free radical scavenging potentials. RESULTS: Based on the ability of the extract in ABTS•+ radical cation inhibition and Fe3+ reducing power, the obtained results revealed ...

Strong Endemism of bloom-forming tubular Ulva in Indian West Coast, with description of Ulva paschima Sp. Nov. (Ulvales, Chlorophyta).

Science.gov (United States)

Bast, Felix; John, Aijaz Ahmad; Bhushan, Satej

2014-01-01

Ulva intestinalis and Ulva compressa are two bloom-forming morphologically-cryptic species of green seaweeds widely accepted as cosmopolitan in distribution. Previous studies have shown that these are two distinct species that exhibit great morphological plasticity with changing seawater salinity. Here we present a phylogeographic assessment of tubular Ulva that we considered belonging to this complex collected from various marine and estuarine green-tide occurrences in a ca. 600 km stretch of the Indian west coast. Maximum Likelihood and Bayesian Inference phylogenetic reconstructions using ITS nrDNA revealed strong endemism of Indian tubular Ulva, with none of the Indian isolates forming part of the already described phylogenetic clades of either U. compressa or U. intestinalis. Due to the straightforward conclusion that Indian isolates form a robust and distinct phylogenetic clade, a description of a new bloom-forming species, Ulva paschima Bast, is formally proposed. Our phylogenetic reconstructions using Neighbor-Joining method revealed evolutionary affinity of this new species with Ulva flexuosa. This is the first molecular assessment of Ulva from the Indian Subcontinent.

Phytoplankton models and life history strategies | Eilertsen | African ...

African Journals Online (AJOL)

Phytoplankton models and life history strategies. ... Chaetoceros bloom of the growth season usually starts in mid March, initiated by C. socialis. ... in some species, inoculation events are controlled by endogenous biological clocks.

Distance Sensitive Bloom Filters Without False Negatives

DEFF Research Database (Denmark)

Goswami, Mayank; Pagh, Rasmus; Silvestri, Francesco

2017-01-01

A Bloom filter is a widely used data-structure for representing a set S and answering queries of the form “Is x in S?”. By allowing some false positive answers (saying ‘yes’ when the answer is in fact ‘no’) Bloom filters use space significantly below what is required for storing S. In the distanc...

Fouling diatom community with reference to substratum variability in tropical marine environment

Digital Repository Service at National Institute of Oceanography (India)

Mitbavkar, S.; Desai, D.V.; Khandeparker, L.; Anil, A.C.; Wagh, A.B.

form encountered. The paper deals with the qualitative and quantitative aspects of diatom colonization, their community structure, and correlation between the prevailing diatom population in the environment and that in the fouling community...

Taxonomic and Environmental Variability in the Elemental Composition and Stoichiometry of Individual Dinoflagellate and Diatom Cells from the NW Mediterranean Sea.

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Mariona Segura-Noguera

Full Text Available Here we present, for the first time, the elemental concentration, including C, N and O, of single phytoplankton cells collected from the sea. Plankton elemental concentration and stoichiometry are key variables in phytoplankton ecophysiology and ocean biogeochemistry, and are used to link cells and ecosystems. However, most field studies rely on bulk techniques that overestimate carbon and nitrogen because the samples include organic matter other than plankton organisms. Here we used X-ray microanalysis (XRMA, a technique that, unlike bulk analyses, gives simultaneous quotas of C, N, O, Mg, Si, P, and S, in single-cell organisms that can be collected directly from the sea. We analysed the elemental composition of dinoflagellates and diatoms (largely Chaetoceros spp. collected from different sites of the Catalan coast (NW Mediterranean Sea. As expected, a lower C content is found in our cells compared to historical values of cultured cells. Our results indicate that, except for Si and O in diatoms, the mass of all elements is not a constant fraction of cell volume but rather decreases with increasing cell volume. Also, diatoms are significantly less dense in all the measured elements, except Si, compared to dinoflagellates. The N:P ratio of both groups is higher than the Redfield ratio, as it is the N:P nutrient ratio in deep NW Mediterranean Sea waters (N:P = 20-23. The results suggest that the P requirement is highest for bacterioplankton, followed by dinoflagellates, and lowest for diatoms, giving them a clear ecological advantage in P-limited environments like the Mediterranean Sea. Finally, the P concentration of cells of the same genera but growing under different nutrient conditions was the same, suggesting that the P quota of these cells is at a critical level. Our results indicate that XRMA is an accurate technique to determine single cell elemental quotas and derived conversion factors used to understand and model ocean biogeochemical

Diatoms - nature materials with great potential for bioapplications

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Medarević Đorđe P.

2016-01-01

Full Text Available Diatoms are widespread unicellular photosynthetic algae that produce unique highly ordered siliceous cell wall, called frustule. Micro- to nanoporous structure with high surface area that can be easily modified, high mechanical resistance, unique optical features (light focusing and luminescence and biocompatibility make diatom frustule as a suitable raw material for the development of devices such as bio- and gas sensors, microfluidic particle sorting devices, supercapacitors, batteries, solar cells, electroluminescent devices and drug delivery systems. Their wide availability in the form of fossil remains (diatomite or diatomaceous earth as well as easy cultivation in the artificial conditions further supports use of diatoms in many different fields of application. This review focused on the recent achievements in the diatom bioapplications such as drug delivery, biomolecules immobilization, bio- and gas sensing, since great progress was made in this field over the last several years.

Doping of magnetite nanoparticles facilitates clean harvesting of diatom oil as biofuel for sustainable energy

Science.gov (United States)

Kumar, Vikas; Singh, Ramesh; Thakur, Shipra; Ballabh Joshi, Khashti; Vinayak, Vandana

2018-04-01

Photosynthetic unicellular brown algae diatoms are considered as photobioreactors (PBRs) that synthesize and store oil in the form of lipid droplets and the much of the crude oil we use comes from fossil diatoms. The clean extraction of this crude oil from diatoms is difficult task. The construction of green chemical protocols for the clean separation of diatom oil from cells without killing or to harm the diatom cells is still in its primitive stage. In this report we would like to propose that facile doping of magnetite on diatoms can be used for clean oil separation in PBRs. We doped magnetite nanoparticles onto the surface of diatom Diadesmis confervaceae a diatom which oozes oil naturally. Doping magnetite onto diatoms can also facilitate easy separation of oil when cells are kept in an electromagnetic field. The cell wall of diatom besides having SiOH group has 281 amino acids of which 187–188 amino acids are conserved and are known for metal binding sites. The magnetite nanoparticles bind to the SiOH groups and metal binding sites of amino acids. The presence of appropriate amine functionalized linkers forming peptide aminosilane shells can further facilitate the binding of peptide/polypeptides which can be used in drug delivery. Besides this the magnetite doped diatoms have wide applications in removal of phosphates and chromium from waste water too.

The development and decline of phytoplankton blooms in the southern Benguela upwelling region

International Nuclear Information System (INIS)

Brown, P.C.

1986-10-01

Productivity/chlorophyll a relationship are investigated with a view to estimating phytoplankton productivity from extensive chlorophyll a measurements in the southern Benguela region. Phytoplankton bloom dynamics in newly upwelled water off the Cape Peninsula are investigated on five different occasions during the upwelling season. A drogue was used to tag a 'parcel' of upwelled water which was monitored for between 4 and 8 days. In upwelling source water, mean chlorophyll a concentrations were typically low (0.7 mg.m -3 ) and nutrient concentrations were high (nitrates, silicates and phosphates were 20.8, 16.6 and 1.88 mmol.m -3 respectively). Along the drogue tracks nutrients decreased rapidly in the euphotic zone as chlorophyll increased to peak at concentrations of up to 26 mg.m -3 . Elemental changes in nitrates, silicates, phosphates and oxygen were used to estimate primary productivity. These 'Redfield productivity estimates' were similar to 14 C-uptake productivity but lower than estimates obtained from changes in particle volume. Daily rates of 14 C-uptake water column productivity ranged between 0.94 and 14.01 g C.m -2 .d -1 (mean 3.80 g C.m -2 .d -1 ) and were similar to or higher than productivity estimates reported for other upwelling areas. Phytoplankton biomass in the upper 50 metres ranged between 8 and 506 mg chll a. m -2 (mean 208 mg chll a.m -2 ). The temporal scale of phytoplankton bloom development was investigated in terms of changes in chlorophyll a concentrations in the euphotic zone. The build up and decline of the primary phytoplankton (diatom) bloom in newly upwelled water occurred within 6-8 days. The initiation of blooming was controlled by the stability of the water body. The decline of the bloom was associated with reduced nutrient levels and is considered to result mainly from phytoplankton cells sinking out of the surface layers

Seasonal changes in nutrients, chlorophyll a and the phytoplankton assemblage of the western subarctic gyre in the Pacific Ocean

Science.gov (United States)

Mochizuki, Mamiko; Shiga, Naonobu; Saito, Masaru; Imai, Keiri; Nojiri, Yukihiro

The standing stock and species composition of phytoplankton (>10 μm) were studied using monthly water samples collected at Stn KNOT (Kyodo North Pacific Ocean Time Series; 44°N, 155°E) in the western subarctic gyre in the Pacific Ocean through June 1998 to June 1999 (except for January-April 1999) and January-February 2000. One-liter water samples were preserved in 1% neutrally buffered formalin. Identification and enumeration of phytoplankton were made with an inverted microscope. Nutrients did not appear to be depleted for phytoplakton growth during any season. The vertical distribution of phytoplankton was primarily restricted by the pycnocline, and the bulk of phytoplankton assemblage existed within the surface mixed layer. In July, however, some senescent cells were observed at 200 m. Phytoplankton abundance clearly showed a spring maximum (i.e. spring bloom) in May. The seasonal change in cell numbers, however, did not coincide closely with the change in chlorophyll a concentration. Centric diatoms, which were composed of Thalassiosira, Chaetoceros, and Coscinodiscus, dominated all year round, and showed temporal succession. Pennate diatoms (mostly Neodenticula seminae and Fragilariopsis) increased only during the spring bloom. Dinoflagellates (mostly Gymnodinium and Prorocentrum) were low in abundance, although they increased in summer when the phytoplankton standing stock was low. Silicoflagellate abundance was extremely low. Comparing the annual species composition of phytoplankton between Stn KNOT and Stn P (50°N, 145°W) in the Alaskan Gyre, there was a remarkable difference between the two sites. The phytoplankton assemblage at Stn P is characterized by a high abundance of Rhizosolenia alata and low abundance of Thalassiosira. In contrast, Thalassiosira dominates at Stn KNOT during most seasons.

Algal Bloom: Boon or Bane?

Digital Repository Service at National Institute of Oceanography (India)

LokaBharathi, P.A.

Algal blooms occur in response to nutrient deplete or replete conditions. Nitrogen fixing forms proliferate under oligotrophic conditions when nutrient levels are low. Replete conditions in response to upwelling creates the most biologically...

Bloom dynamics of the genus Pseudo-nitzschia (Bacillariophyceae in two coastal bays (NW Mediterranean Sea

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Sonia Quijano-Scheggia

2008-09-01

Full Text Available The spatial and temporal variations in the composition of Pseudo-nitzschia during bloom events from August 2005 to February 2006 were characterised in two bays of the NW Mediterranean Sea (Alfacs and Fangar Bay by means of scanning electron microscopy (SEM. The study provides detailed records of the Pseudo-nitzschia community at the species level and describes its relationship with both the surrounding environmental conditions and biotic factors such as the accompanying phytoplankton community. The size distributions of several species of Pseudo-nitzschia were monitored during the bloom events. These measurements may serve as indicators of the physiological status of the cells. The species observed in the two bays were Pseudo-nitzschia calliantha, P. delicatissima, P. fraudulenta, P. multistriata, and P. pungens. In Alfacs Bay, a mixed species bloom of P. calliantha and P. delicatissima began in late August 2005 and lasted 11 weeks. In Fangar Bay, the Pseudo-nitzschia bloom was limited to the period from early August to late September 2005 and comprised P. calliantha and P. delicatissima. Commonly, the proliferation of Pseudo-nitzschia was mono-specific or was accompanied by other diatoms. Two objectively defined groups were identified by the statistical analysis in Alfacs bay; the first was made up only of winter samples and the second of summer and autumn samples. The first group was defined by a high concentration of NO3¯ and low concentrations of NH4+, conditions associated with a high abundance of P. delicatissima and a low abundance of P. calliantha. The second group expressed the opposite characteristics. A succession of different blooming species of Pseudo-nitzschia lasting months in Alfacs Bay is described.

Picocyanobacteria Dominance in Deep Biomass Layers: Relation to Diatom Presence and Episodic Events.

Science.gov (United States)

Aguilar, C.; Cuhel, R. L.

2016-02-01

In Offshore Marine and Large Lake Waters, most of the biomass and the productivity of phytoplankton occur below surface observation capabilities. Sub-mixed layer phytoplankton populations develop, increase, persist, and decay in relation to physical structure such as pycnocline density gradients interacting with progressively changing light fields. Basin-scale meteorological events and persistence of major invasive species have also left marks on biogeochemical cycling and ecosystem function in Lake Michigan. Among the former are precipitation and turbulence alterations brought on by unusual winter ice cover and a century-scale flood during 2008. Dampened seasonal silicate cycling indicated a basin-wide reduction of diatom production following mussel establishment. Communities in Lake Michigan shifted from diatom and big cell-dominated to small cell picocyanobacteria-dominated phytoplankton. Picocyanobacteria were beneficiaries of profound oligotrophication of the ecosystem starting in 2003. Photosynthetic parameters of pre-2003 Deep Biomass populations dominated by diatoms were systematically different from the cyanobacterial epoch following quagga mussel establishment and increase in depth of 1% incident light to 50-60m. Deep cyanobacterial production has now often been on the same scale as overlying waters. Photophysiology changes in a smooth depth gradient in this clear water as opposed to previous abrupt transition to shade adaptation. Among these many physicochemical permutations, community structure has consistently been a tradeoff between diatoms and picocyanobacteria. Opposing fluctuations of biomass favor one or the other on seasonal time frames of sequential years, with a complete system reset between each (winter mixing). For the Great Flood example, diatom surface blooms increased light extinction and drove the deep biomass maximum up - as populations settled into the pycnocline they had already outcompeted the picocyanobacteria. The opposite was true

Diatom-Specific Oligosaccharide and Polysaccharide Structures Help to Unravel Biosynthetic Capabilities in Diatoms

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Bruno Gügi

2015-09-01

Full Text Available Diatoms are marine organisms that represent one of the most important sources of biomass in the ocean, accounting for about 40% of marine primary production, and in the biosphere, contributing up to 20% of global CO2 fixation. There has been a recent surge in developing the use of diatoms as a source of bioactive compounds in the food and cosmetic industries. In addition, the potential of diatoms such as Phaeodactylum tricornutum as cell factories for the production of biopharmaceuticals is currently under evaluation. These biotechnological applications require a comprehensive understanding of the sugar biosynthesis pathways that operate in diatoms. Here, we review diatom glycan and polysaccharide structures, thus revealing their sugar biosynthesis capabilities.

Automated measurement of diatom size

Science.gov (United States)

Spaulding, Sarah A.; Jewson, David H.; Bixby, Rebecca J.; Nelson, Harry; McKnight, Diane M.

2012-01-01

Size analysis of diatom populations has not been widely considered, but it is a potentially powerful tool for understanding diatom life histories, population dynamics, and phylogenetic relationships. However, measuring cell dimensions on a light microscope is a time-consuming process. An alternative technique has been developed using digital flow cytometry on a FlowCAM® (Fluid Imaging Technologies) to capture hundreds, or even thousands, of images of a chosen taxon from a single sample in a matter of minutes. Up to 30 morphological measures may be quantified through post-processing of the high resolution images. We evaluated FlowCAM size measurements, comparing them against measurements from a light microscope. We found good agreement between measurement of apical cell length in species with elongated, straight valves, including small Achnanthidium minutissimum (11-21 µm) and largeDidymosphenia geminata (87–137 µm) forms. However, a taxon with curved cells, Hannaea baicalensis (37–96 µm), showed differences of ~ 4 µm between the two methods. Discrepancies appear to be influenced by the choice of feret or geodesic measurement for asymmetric cells. We describe the operating conditions necessary for analysis of size distributions and present suggestions for optimal instrument conditions for size analysis of diatom samples using the FlowCAM. The increased speed of data acquisition through use of imaging flow cytometers like the FlowCAM is an essential step for advancing studies of diatom populations.

WATER BLOOM OF BLUEGREEN ALGE IN CARP FISHPOUNDS

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Melita Mihaljević

1996-03-01

Full Text Available The massive development of bluegreen algae (Cyanophyta/Cyanobacteria, the so--called water bloom, is a frequent phenomenon in fishpond ecosystems. This study analyses water bloom development in three carp fishponds owned by a fishbreeding company at Donji Miholjac (Croatia, where one-year-old carps (Cyprinus carpio , were bred in defferent fishstock densities. Analyses of physicallychemical properties of water and phytoplankton biomass were per- formed in fortnight intervals from May till October, 1992. In all there investigated fishponds the water bloom of bluegreen algae developed, but at a different time and showing a different qualitative composition. In the fishpond with fishstock density of 250 kg/ha water bloom consisted of the species Aphanizomenon flos-aquae, and the biggest biomass (131.92 mg/I was found in August. In the fishpond with fishstock density of 437 kg/ha a water bloom consisting of species from the genues Anabaena and species Aphanizomenon flos-aquae developed at the end of July. In the fishpond with the so--called intensive breeding (fishstock density of 750 kg/ha water bloom of the species Microcystis aeruginosa developed as late as September. The beginning of water bloom development was caused by the low value (lower than 7 of the ratio between the quantities of total phosphorus and total nitrogen. However, the qualitative composition of water bloom was influenced by one-year-old carp fingerlings density.

Diatom-derived oxylipins induce cell death in sea urchin embryos activating caspase-8 and caspase 3/7.

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Ruocco, Nadia; Varrella, Stefano; Romano, Giovanna; Ianora, Adrianna; Bentley, Matt G; Somma, Domenico; Leonardi, Antonio; Mellone, Stefano; Zuppa, Antonio; Costantini, Maria

2016-07-01

Diatoms are an important class of unicellular algae that produce bioactive secondary metabolites with cytotoxic activity collectively termed oxylipins, including polyunsaturated aldehydes (PUAs), hydroxyacids (HEPEs), oxo-acids and epoxyalcohols. Previous results showed that at higher concentrations, the PUA decadienal induced apoptosis on copepods and sea urchin embryos via caspase-3 activation; at lower concentrations decadienal affected the expression levels of the caspase-8 gene in embryos of the sea urchin Paracentrotus lividus. In the present work, we studied the effects of other common oxylipins produced by diatoms: two PUAs (heptadienal and octadienal) and four hydroxyacids (5-, 9- 11- and 15-HEPE) on P. lividus cell death and caspase activities. Our results showed that (i) at higher concentrations PUAs and HEPEs induced apoptosis in sea urchin embryos, detected by microscopic observation and through the activation of caspase-3/7 and caspase-8 measured by luminescent assays; (ii) at low concentrations, PUAs and HEPEs affected the expression levels of caspase-8 and caspase-3/7 (isolated for the first time here in P. lividus) genes, detected by Real Time qPCR. These findings have interesting implications from the ecological point of view, given the importance of diatom blooms in nutrient-rich aquatic environments. Copyright © 2016 Elsevier B.V. All rights reserved.

Wind-driven marine phytoplank blooms: Satellite observation and analysis

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Tang, DanLing

2016-07-01

Algal bloom is defined as a rapid increase or accumulation in biomass in an aquatic system. It not only can increase the primary production but also could result in negative ecological consequence, e.g.,Harmful Algal Blooms (HABs). According to the classic theory for the formation of algal blooms "critical depth" and "eutrophication", oligotrophic sea area is usually difficult to form a large area of algal blooms, and actuallythe traditional observation is only sporadic capture to the existence of algal blooms.Taking full advantage of multiple data of satellite remote sensing , this study introduces "Wind-driven algal blooms in open oceans: observation and mechanisms" It explained except classic coastal Ekman transport, the wind through a variety of mechanisms affecting the formation of algal blooms. Proposed a conceptual model of "Strong wind -upwelling-nutrient-phytoplankton blooms" in Western South China Sea (SCS) to assess role of wind-induced advection transport in phytoplankton bloom formation. It illustrates the nutrient resources that support long-term offshore phytoplankton blooms in the western SCS; (2)Proposal of the theory that "typhoons cause vertical mixing, induce phytoplankton blooms", and quantify their important contribution to marine primary production; Proposal a new ecological index for typhoon. Proposed remote sensing inversion models. (3)Finding of the spatial and temporaldistributions pattern of harmful algal bloom (HAB)and species variations of HAB in the South Yellow Sea and East China Sea, and in the Pearl River estuary, and their oceanic dynamic mechanisms related with monsoon; The project developed new techniques and generated new knowledge, which significantly improved understanding of the formation mechanisms of algal blooms. The proposed "wind-pump" mechanism integrates theoretical system combined "ocean dynamics, development of algal blooms, and impact on primary production", which will benefit fisheries management. These

Influence of diatom diversity on the ocean biological carbon pump

Science.gov (United States)

Tréguer, Paul; Bowler, Chris; Moriceau, Brivaela; Dutkiewicz, Stephanie; Gehlen, Marion; Aumont, Olivier; Bittner, Lucie; Dugdale, Richard; Finkel, Zoe; Iudicone, Daniele; Jahn, Oliver; Guidi, Lionel; Lasbleiz, Marine; Leblanc, Karine; Levy, Marina; Pondaven, Philippe

2018-01-01

Diatoms sustain the marine food web and contribute to the export of carbon from the surface ocean to depth. They account for about 40% of marine primary productivity and particulate carbon exported to depth as part of the biological pump. Diatoms have long been known to be abundant in turbulent, nutrient-rich waters, but observations and simulations indicate that they are dominant also in meso- and submesoscale structures such as fronts and filaments, and in the deep chlorophyll maximum. Diatoms vary widely in size, morphology and elemental composition, all of which control the quality, quantity and sinking speed of biogenic matter to depth. In particular, their silica shells provide ballast to marine snow and faecal pellets, and can help transport carbon to both the mesopelagic layer and deep ocean. Herein we show that the extent to which diatoms contribute to the export of carbon varies by diatom type, with carbon transfer modulated by the Si/C ratio of diatom cells, the thickness of the shells and their life strategies; for instance, the tendency to form aggregates or resting spores. Model simulations project a decline in the contribution of diatoms to primary production everywhere outside of the Southern Ocean. We argue that we need to understand changes in diatom diversity, life cycle and plankton interactions in a warmer and more acidic ocean in much more detail to fully assess any changes in their contribution to the biological pump.

Towards a representative periphytic diatom sample

Directory of Open Access Journals (Sweden)

2007-01-01

Full Text Available The need to acquire a representative periphytic diatom sample for river water quality monitoring has been recognised in the development of existing diatom indices, important in the development and employment of diatom monitoring tools for the Water Framework Directive. In this study, a nested design with replication is employed to investigate the magnitude of variation in diatom biomass, composition and Trophic Diatom Index at varying scales within a small chalk river. The study shows that the use of artificial substrates may not result in diatom communities that are typical of the surrounding natural substrates. Periphytic diatom biomass and composition varies between artificial and natural substrates, riffles and glides and between two stretches of the river channel. The study also highlights the existence of high variation in diatom frustule frequency and biovolume at the individual replicate scale which may have implications for the use of diatoms in routine monitoring.

Environmental investigations using diatom microfossils

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Smith, Kathryn E.L.; Flocks, James G.

2010-01-01

Diatoms are unicellular phytoplankton (microscopic plant-like organisms) with cell walls made of silica (called a frustule). They live in both freshwater and saltwater and can be found in just about every place on Earth that is wet. The shape and morphology of the diatom frustule unique to each species are used for identification. Due to the microscopic size of diatoms, high-power microscopy is required for diatom identification. Diatoms are vital to life on Earth. They are photosynthetic primary producers, using sunlight to create oxygen and organic carbon from carbon dioxide and water. They are a significant source of the oxygen we breathe, have a major impact on the global carbon cycle (Smetacek, 1999), and are a food source for many aquatic organisms (Mann, 1993). Diatom abundance has even been demonstrated to have an influence on the diversity of larger marine mammals, including whales (Marx and Uhen, 2010). Data on diatom abundance and diversity are extremely useful in environmental studies.

Peculiarities of the Woody Plants Re-Bloom

OpenAIRE

Opalko Olga Anatolievna; Opalko Anatoly Ivanovich

2015-01-01

The data of literary sources concerning the bloom of angiosperm plants and deviation in the development of a flower and inflorescence, in particular untimely flowering, was generalized; our observation results of some peculiarities of re-bloom of woody plants in the National Dendrological Park “Sofiyivka” of NAS of Ukraine (NDP “Sofiyivka”) were discussed. The flowering process was formed during a long-term evolution of a propagation system of angiosperm plants as a basis of fertilization and...

C5 glycolipids of heterocystous cyanobacteria track symbiont abundance in the diatom Hemiaulus hauckii across the tropical North Atlantic

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Bale, Nicole J.; Villareal, Tracy A.; Hopmans, Ellen C.; Brussaard, Corina P. D.; Besseling, Marc; Dorhout, Denise; Sinninghe Damsté, Jaap S.; Schouten, Stefan

2018-03-01

Diatom-diazotroph associations (DDAs) include marine heterocystous cyanobacteria found as exosymbionts and endosymbionts in multiple diatom species. Heterocysts are the site of N2 fixation and have thickened cell walls containing unique heterocyst glycolipids which maintain a low oxygen environment within the heterocyst. The endosymbiotic cyanobacterium Richelia intracellularis found in species of the diatom genus Hemiaulus and Rhizosolenia makes heterocyst glycolipids (HGs) which are composed of C30 and C32 diols and triols with pentose (C5) moieties that are distinct from limnetic cyanobacterial HGs with predominantly hexose (C6) moieties. Here we applied a method for analysis of intact polar lipids to the study of HGs in suspended particulate matter (SPM) and surface sediment from across the tropical North Atlantic. The study focused on the Amazon plume region, where DDAs are documented to form extensive surface blooms, in order to examine the utility of C5 HGs as markers for DDAs as well as their transportation to underlying sediments. C30 and C32 triols with C5 pentose moieties were detected in both marine SPM and surface sediments. We found a significant correlation between the water column concentration of these long-chain C5 HGs and DDA symbiont counts. In particular, the concentrations of both the C5 HGs (1-(O-ribose)-3,27,29-triacontanetriol (C5 HG30 triol) and 1-(O-ribose)-3,29,31-dotriacontanetriol (C5 HG32 triol)) in SPM exhibited a significant correlation with the number of Hemiaulus hauckii symbionts. This result strengthens the idea that long-chain C5 HGs can be applied as biomarkers for marine endosymbiotic heterocystous cyanobacteria. The presence of the same C5 HGs in surface sediment provides evidence that they are effectively transported to the sediment and hence have potential as biomarkers for studies of the contribution of DDAs to the paleo-marine N cycle.

Effect of ageing on survival of benthic diatom propagules

Digital Repository Service at National Institute of Oceanography (India)

Anil, A.C.; Mitbavkar, S.; De; Hegde, S.; De; Meher, S.S.; Banerjee, D.

unfavorable for vegetative growth, many diatoms form resting stages to survive cell degradation or death (Anderson, 1975; Malone, 1980; Hargraves and French, 1983; Fryxell, 1990). Various external factors like availability of nutrients (N, P, Fe, Si.... 128, 497-508. 15 Lewis, J., Harris, A.S.D., Jones, K.J., Edmonds, R.L., 1999. Long-term survival of marine planktonic diatoms and dinoflagellates in stored sediment samples. J. Plank. Res. 21, 343- 354. Malone, T.C., 1980. Algal size. In...

Metals and metalloids in the water-bloom-forming cyanobacteria and ambient water from Nanquan coast of Taihu Lake, China.

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Su, Yanping; Liu, Hongbo; Yang, Jian

2012-08-01

Concentrations of 12 metal(oid)s were investigated in the bloom-forming cyanobacteria and ambient water samples collected monthly between March 2009 and February 2010 at the Nanquan coast of Taihu Lake, China. The metal(oid) concentrations in ambient water decreased in the order Fe > Zn > Ni ≈ As ≈ Cu > Mn > Ag > Cr > Se > Cd > Co > Tl, while those in cyanobacteria followed a sequence Fe > Mn > Zn > Cu ≈ Ni > Co > Ag > Cr ≈ As > Cd > Tl > Se. The metal(loid) burdens removed by cyanobacteria were estimated as 164 t Fe, 12.4 t Mn, 3.6 t Zn, 2.0 t Ni, 2.0 t Cu, 0.5 t As, 0.5 t Cr, 0.4 t Cd, 0.9 t Ag, 1.1 t Co, 0.2 t Tl, and 0.09 t Se during the 2008-2010 bloom seasons.

Diatom-inspired templates for 3D replication: natural diatoms versus laser written artificial diatoms

International Nuclear Information System (INIS)

Belegratis, M R; Schmidt, V; Nees, D; Stadlober, B; Hartmann, P

2014-01-01

The diatoms are ubiquitous, exist in large numbers and show a great diversity of features on their porous silica structures. Therefore, they inspire the fabrication of nanostructured templates for nanoimprint processes (NIL), where large structured areas with nanometer precision are required. In this study, two approaches regarding the respective challenges and potential exploitations are followed and discussed: the first one takes advantage of a template that is directly made of natural occurring diatoms. Here, two replication steps via soft lithography are needed to obtain a template which is subsequently used for NIL. The second approach exploits the technical capabilities of the precise 3D laser lithography (3DLL) based on two-photon polymerization of organic materials. This method enables the fabrication of arbitrary artificial diatom-inspired micro- and nanostructures and the design of an inverse structure. Therefore, only one replication step is needed to obtain a template for NIL. In both approaches, a replication technique for true 3D structures is shown. (paper)

Spatial and Temporal Variations in Diatoms from la Chaine des Lacs Urban Watershed, Nord-Pas France, in Relation to Water Quality

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Noble, P. J.; Van de Vijver, B.; Verleyen, E.; Prygiel, J.; Ivanovsky, A.; Lesven, L.; Billon, G.

2016-12-01

Diatom analysis was conducted on lake sediments in la Chaîne des Lacs (CDL), a shallow eutrophic urban park and storm control system in Villeneuve d'Ascq, France, to address both the present day water quality, and the evolution of this urban system over its 40 year history. The main lake, Lac du Héron (LDH), received recent attention because of water quality problems, including eutrophication, harmful algal blooms, and invasion by the macrophyte Elodea in 2012. A total of 17 sites were collected in CDL, 11 of which were in LDH, to document spatial variability, and a 26cm long core addresses historical changes. The bulk of the diatom assemblage in LDH can be classified as both eutrophic and moderately metal tolerant, using modern national diatom indices developed and used by the French regional water agencies. Surface sediment samples within LDH show large spatial variations in %Cocconeis placentula whose habitat is epiphytic growth on Elodea. Other variation is reflected in the phytoplankton composition both spatially, and interannually. Aulacoseira muzzanensis and Cyclostephanos dubius showed greater abundance in the open water habitats in LDH, whereas sites in CDL outside of LDH had greater Cyclotella meneghiniana. Temporally, Stephanodicsus (largely S. hantzschii), the dominant diatom in early spring, were present in greater abundances in the 2016 surface sediment samples than in any of the 2015 samples. One possible explanation is that the 2016 samples, taken March 30th, preferentially preserved the early spring Stephanodiscus bloom, in contrast to the 2015 samples, which were taken in January. The sediment core provides an historical record, where the uppermost 4cm plot with the bulk of the LDH surface samples and contain abundant Cocconeis, 4 -14cm is phytoplankton-rich, largely Cyclostephanos dubius and Aulacoseira muzzanensis, and represents a less weed-choked environment prior to the 2012 Elodea invasion. The base of the core is dominated by Amphora and

Simultaneous elimination of cyanotoxins and PCBs via mechanical collection of cyanobacterial blooms: An application of "green-bioadsorption concept".

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Chen, Wei; Jia, Yunlu; Liu, Anyue; Zhou, Qichao; Song, Lirong

2017-07-01

In this study, the distribution, transfer and fate of both polychlorinated biphenyls (PCBs) and cyanotoxins via phytoplankton routes were systematically investigated in two Chinese lakes. Results indicated that PCB adsorption/bioaccumulation dynamics has significantly positive correlations with the biomass of green alga and diatoms. Total lipid content of phytoplankton is the major factor that influences PCB adsorption/bioaccumulation. Cyanobacterial blooms with relatively lower lipid content could also absorb high amount of PCBs due to their high cell density in the water columns, and this process was proposed as major route for the transfer of PCBs in Chinese eutrophic freshwater. According to these findings, a novel route on fates of PCBs via phytoplankton and a green bioadsorption concept were proposed and confirmed. In the practice of mechanical collections of bloom biomass from Lake Taihu, cyanotoxin/cyanobacteria and PCBs were found to be removed simultaneously very efficiently followed this theory. Copyright © 2016. Published by Elsevier B.V.

Thermogravimetric study on pyrolysis kinetics of Chlorella pyrenoidosa and bloom-forming cyanobacteria.

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Hu, Mian; Chen, Zhihua; Guo, Dabin; Liu, Cuixia; Xiao, Bo; Hu, Zhiquan; Liu, Shiming

2015-02-01

The pyrolysis process of two microalgae, Chlorella pyrenoidosa (CP) and bloom-forming cyanobacteria (CB) was examined by thermo-gravimetry to investigate their thermal decomposition behavior under non-isothermal conditions. It has found that the pyrolysis of both microalgae consists of three stages and stage II is the major mass reduction stage with mass loss of 70.69% for CP and 64.43% for CB, respectively. The pyrolysis kinetics of both microalgae was further studied using single-step global model (SSGM) and distributed activation energy model (DAEM). The mean apparent activation energy of CP and CB in SSGM was calculated as 143.71 and 173.46 kJ/mol, respectively. However, SSGM was not suitable for modeling pyrolysis kinetic of both microalgae due to the mechanism change during conversion. The DAEM with 200 first-order reactions showed an excellent fit between simulated data and experimental results. Copyright © 2014 Elsevier Ltd. All rights reserved.

Large variation in the Rubisco kinetics of diatoms reveals diversity among their carbon-concentrating mechanisms

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Young, Jodi N.; Heureux, Ana M.C.; Sharwood, Robert E.; Rickaby, Rosalind E.M.; Morel, François M.M.; Whitney, Spencer M.

2016-01-01

While marine phytoplankton rival plants in their contribution to global primary productivity, our understanding of their photosynthesis remains rudimentary. In particular, the kinetic diversity of the CO2-fixing enzyme, Rubisco, in phytoplankton remains unknown. Here we quantify the maximum rates of carboxylation (k cat c), oxygenation (k cat o), Michaelis constants (K m) for CO2 (K C) and O2 (K O), and specificity for CO2 over O2 (SC/O) for Form I Rubisco from 11 diatom species. Diatom Rubisco shows greater variation in K C (23–68 µM), SC/O (57–116mol mol−1), and K O (413–2032 µM) relative to plant and algal Rubisco. The broad range of K C values mostly exceed those of C4 plant Rubisco, suggesting that the strength of the carbon-concentrating mechanism (CCM) in diatoms is more diverse, and more effective than previously predicted. The measured k cat c for each diatom Rubisco showed less variation (2.1–3.7s−1), thus averting the canonical trade-off typically observed between K C and k cat c for plant Form I Rubisco. Uniquely, a negative relationship between K C and cellular Rubisco content was found, suggesting variation among diatom species in how they allocate their limited cellular resources between Rubisco synthesis and their CCM. The activation status of Rubisco in each diatom was low, indicating a requirement for Rubisco activase. This work highlights the need to better understand the correlative natural diversity between the Rubisco kinetics and CCM of diatoms and the underpinning mechanistic differences in catalytic chemistry among the Form I Rubisco superfamily. PMID:27129950

Field and laboratory guide to freshwater cyanobacteria harmful algal blooms for Native American and Alaska Native communities

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Rosen, Barry H.; St. Amand, Ann

2015-09-14

Cyanobacteria can produce toxins and form harmful algal blooms. The Native American and Alaska Native communities that are dependent on subsistence fishing have an increased risk of exposure to these cyanotoxins. It is important to recognize the presence of an algal bloom in a waterbody and to distinguish a potentially toxic harmful algal bloom from a non-toxic bloom. This guide provides field images that show cyanobacteria blooms, some of which can be toxin producers, as well as other non-toxic algae blooms and floating plants that might be confused with algae. After recognition of a potential toxin-producing cyanobacterial bloom in the field, the type(s) of cyanobacteria present needs to be identified. Species identification, which requires microscopic examination, may help distinguish a toxin-producer from a non-toxin producer. This guide also provides microscopic images of the common cyanobacteria that are known to produce toxins, as well as images of algae that form blooms but do not produce toxins.

Nitric oxide mediates the stress response induced by diatom aldehydes in the sea urchin Paracentrotus lividus.

Directory of Open Access Journals (Sweden)

Giovanna Romano

Full Text Available Diatoms are ubiquitous and abundant primary producers that have been traditionally considered as a beneficial food source for grazers and for the transfer of carbon through marine food webs. However, many diatom species produce polyunsaturated aldehydes that disrupt development in the offspring of grazers that feed on these unicellular algae. Here we provide evidence that production of the physiological messenger nitric oxide increases after treatment with the polyunsaturated aldehyde decadienal in embryos of the sea urchin Paracentrotus lividus. At high decadienal concentrations, nitric oxide mediates initial apoptotic events leading to loss of mitochondrial functionality through the generation of peroxynitrite. At low decadienal concentrations, nitric oxide contributes to the activation of hsp70 gene expression thereby protecting embryos against the toxic effects of this aldehyde. When nitric oxide levels were lowered by inhibiting nitric oxide synthase activity, the expression of hsp70 in swimming blastula decreased and the proportion of abnormal plutei increased. However, in later pluteus stages nitric oxide was no longer able to exert this protective function: hsp70 and nitric oxide synthase expression decreased with a consequent increase in the expression of caspase-8. Our findings that nitric oxide production increases rapidly in response to a toxic exogenous stimulus opens new perspectives on the possible role of this gas as an important messenger to environmental stress in sea urchins and for understanding the cellular mechanisms underlying toxicity during diatom blooms.

Proximate composition analysis posterior to the cryopreservation of Chaetoceros calcitrans

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Joan Salas-Leiva

2015-12-01

Full Text Available Objective. The effect of cryopreservation on the proximate composition of microalgae Chaetoceros calcitrans was evaluated. Materials and methods. C. calcitrans was cultured and cryopreserved using 5% (v/v dimethylsulfoxide as cryoprotectant. The freezing was controlled at a rate of 3°C/min, up to -60°C and then the microalgae were immersed in liquid nitrogen (-196°C. After storage in liquid nitrogen, microalgae were rapidly thawed out and subcultured. The percentage of proteins, lipids and carbohydrates was analyzed using absorption spectrophotometry and the organic matter was studied by gravimetric analysis. Results. There was no significant variation between the proximate composition of C. calcitrans cryopreserved and the controls (p>0.05. Conclusion. Our results show that, despite low cell recovery after the preservation of this organism at low temperatures, there is no apparent loss of nutritional characteristics caused by the storing process at low temperatures.

Harmful Algal Blooms of the West Florida Shelf and Campeche Bank: Visualization and Quantification using Remote Sensing Methods

Science.gov (United States)

Soto Ramos, Inia Mariel

Harmful Algal Blooms (HABs) in the Gulf of Mexico (GOM) are natural phenomena that can have negative impacts on marine ecosystems on which human health and the economy of some Gulf States depends. Many of the HABs in the GOM are dominated by the toxic dinoflagellate Karenia brevis. Non-toxic phytoplankton taxa such as Scrippsiella sp. also form intense blooms off the Mexican coast that result in massive fish mortality and economic losses, particularly as they may lead to anoxia. The main objectives of this dissertation were to (1) evaluate and improve the techniques developed for detection of Karenia spp. blooms on the West Florida Shelf (WFS) using satellite remote sensing methods, (2) test the use of these methods for waters in the GOM, and (3) use the output of these techniques to better understand the dynamics and evolution of Karenia spp. blooms in the WFS and off Mexico. The first chapter of this dissertation examines the performance of several Karenia HABs detection techniques using Moderate Resolution Imaging Spectroradiometer (MODIS) satellite images and historical ground truth observations collected on the WFS from August 2002 to December 2011. A total of 2323 in situ samples collected by the Florida Fish and Wildlife Research Institute to test for Karenia spp. matched pixels with valid ocean color satellite observations over this period. This dataset was used to systematically optimize variables and coefficients used in five published HAB detection methods. Each technique was tested using a set of metrics that included the F-Measure (FM). Before optimization, the average FM for all techniques was 0.47. After optimization, the average FM increased to 0.59, and false positives decreased ~50%. The addition of a Fluorescence Line Height (FLH) criterion improved the performance of every method. A new practical method was developed using a combination of FLH and Remote Sensing Reflectance at 555 nm (Rrs555-FLH). The new method resulted in an FM of 0.62 and 3

Genetic Basis for Geosmin Production by the Water Bloom-Forming Cyanobacterium, Anabaena ucrainica

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Zhongjie Wang

2014-12-01

Full Text Available Geosmin is a common, musty-smelling sesquiterpene, principally produced by cyanobacteria. Anabaena ucrainica (Schhorb. Watanabe, a water bloom-forming cyanobacterium, is the geosmin producer responsible for odor problems in Dianchi and Erhai lakes in China. In this study, the geosmin synthase gene (geo of A. ucrainica and its flanking regions were identified and cloned by polymerase chain reaction (PCR and genome walking. The geo gene was found to be located in a transcription unit with two cyclic nucleotide-binding protein genes (cnb. The two cnb genes were highly similar and were predicted members of the cyclic adenosine monophosphate (cAMP receptor protein/fumarate nitrate reductase regulator (Crp–Fnr family. Phylogenetic and evolutionary analyses implied that the evolution of the geosmin genes involved a horizontal gene transfer process in cyanobacteria. These genes showed a close relationship to 2-methylisoborneol genes in origin and evolution.

Properties of light absorption in a highly coloured estuarine system in south-east Australia which is prone to blooms of the toxic dinoflagellate Gymnodinium catenatum

Science.gov (United States)

Clementson, Lesley A.; Parslow, John S.; Turnbull, Alison R.; Bonham, Pru I.

2004-05-01

The Huon Estuary in south-east Tasmania is an important site in Australia's aquaculture and finfish industries. Atlantic salmon and shellfish are farmed in the Huon River Estuary, which drains a catchment that includes both areas of pristine wilderness and agriculture. The estuary experiences algal blooms, including blooms of the toxic dinoflagellate Gymnodinium catenatum, which can cause considerable problems for the aquaculture industry. The freshwater input is highly coloured due to high levels of humic material and this combined with intrusions of clearer oceanic water and the occurrence of algal blooms makes this estuary optically complex. Between November 1996 and September 1998 samples for pigment and optical analyses were collected weekly from five sites within the mid to lower regions of the estuary. In addition, every three months (beginning July 1996), samples were collected from 30 sites within the full river/estuary system. Early in December 1997 a bloom of Gymnodinium catenatum occurred throughout the estuary and persisted until June 1998. Chromophoric dissolved organic matter (CDOM) was found to dominate the total absorption of the water throughout the entire estuary and over the two-year duration of the study. The occurrence of algal blooms showed no correlation with the optical characteristics of the estuary, suggesting that optical parameters cannot be used to predict the occurrence of algal blooms in this estuary. Blooms of different algal species, such as diatoms and dinoflagellates, may be able to be distinguished by their absorption spectra in the UV region rather than the visible region. To date, this study is the most detailed spatial and temporal study of the characteristics of light absorption in an estuarine system within Australia.

The influence of environmental variability on the biogeography of coccolithophores and diatoms in the Great Calcite Belt

Science.gov (United States)

Smith, Helen E. K.; Poulton, Alex J.; Garley, Rebecca; Hopkins, Jason; Lubelczyk, Laura C.; Drapeau, Dave T.; Rauschenberg, Sara; Twining, Ben S.; Bates, Nicholas R.; Balch, William M.

2017-11-01

The Great Calcite Belt (GCB) of the Southern Ocean is a region of elevated summertime upper ocean calcite concentration derived from coccolithophores, despite the region being known for its diatom predominance. The overlap of two major phytoplankton groups, coccolithophores and diatoms, in the dynamic frontal systems characteristic of this region provides an ideal setting to study environmental influences on the distribution of different species within these taxonomic groups. Samples for phytoplankton enumeration were collected from the upper mixed layer (30 m) during two cruises, the first to the South Atlantic sector (January-February 2011; 60° W-15° E and 36-60° S) and the second in the South Indian sector (February-March 2012; 40-120° E and 36-60° S). The species composition of coccolithophores and diatoms was examined using scanning electron microscopy at 27 stations across the Subtropical, Polar, and Subantarctic fronts. The influence of environmental parameters, such as sea surface temperature (SST), salinity, carbonate chemistry (pH, partial pressure of CO2 (pCO2), alkalinity, dissolved inorganic carbon), macronutrients (nitrate + nitrite, phosphate, silicic acid, ammonia), and mixed layer average irradiance, on species composition across the GCB was assessed statistically. Nanophytoplankton (cells 2-20 µm) were the numerically abundant size group of biomineralizing phytoplankton across the GCB, with the coccolithophore Emiliania huxleyi and diatoms Fragilariopsis nana, F. pseudonana, and Pseudo-nitzschia spp. as the most numerically dominant and widely distributed. A combination of SST, macronutrient concentrations, and pCO2 provided the best statistical descriptors of the biogeographic variability in biomineralizing species composition between stations. Emiliania huxleyi occurred in silicic acid-depleted waters between the Subantarctic Front and the Polar Front, a favorable environment for this species after spring diatom blooms remove silicic acid

Circular random motion in diatom gliding under isotropic conditions

International Nuclear Information System (INIS)

Gutiérrez-Medina, Braulio; Maldonado, Ana Iris Peña; Guerra, Andrés Jiménez; Rubio, Yadiralia Covarrubias; Meza, Jessica Viridiana García

2014-01-01

How cells migrate has been investigated primarily for the case of trajectories composed by joined straight segments. In contrast, little is known when cellular motion follows intrinsically curved paths. Here, we use time-lapse optical microscopy and automated trajectory tracking to investigate how individual cells of the diatom Nitzschia communis glide across surfaces under isotropic environmental conditions. We find a distinct kind of random motion, where trajectories are formed by circular arcs traveled at constant speed, alternated with random stoppages, direction reversals and changes in the orientation of the arcs. Analysis of experimental and computer-simulated trajectories show that the circular random motion of diatom gliding is not optimized for long-distance travel but rather for recurrent coverage of limited surface area. These results suggest that one main biological role for this type of diatom motility is to efficiently build the foundation of algal biofilms. (paper)

Localization and Tracking of Submerged Phytoplankton Bloom Patches by an Autonomous Underwater Vehicle

Science.gov (United States)

Godin, M. A.; Ryan, J. P.; Zhang, Y.; Bellingham, J. G.

2012-12-01

Observing plankton in their drifting frame of reference permits effective studies of marine ecology from the perspective of microscopic life itself. By minimizing variation caused simply by advection, observations in a plankton-tracking frame of reference focus measurement capabilities on the processes that influence the life history of populations. Further, the patchy nature of plankton populations motivates use of sensor data in real-time to resolve patch boundaries and adapt observing resources accordingly. We have developed capabilities for population-centric plankton observation and sampling by autonomous underwater vehicles (AUVs). Our focus has been on phytoplankton populations, both because of their ecological significance - as the core of the oceanic food web and yet potentially harmful under certain bloom conditions, as well as the accessibility of their signal to simple optical sensing. During the first field deployment of these capabilities in 2010, we tracked a phytoplankton patch containing toxigenic diatoms and found that their toxicity correlated with exposure to resuspended sediments. However, this first deployment was labor intensive as the AUV drove in a pre-programmed pattern centered around a patch-marking drifter; it required a boat deployment of the patch-marking drifter and required full-time operators to periodically estimate of the position of the patch with respect to the drifter and adjust the AUV path accordingly. In subsequent field experiments during 2011 and 2012, the Tethys-class long-range AUVs ran fully autonomous patch tracking algorithms which detected phytoplankton patches and continually updated estimates of each patch center by driving adaptive patterns through the patch. Iterations of the algorithm were generated to overcome the challenges of tracking advecting and evolving patches while minimizing human involvement in vehicle control. Such fully autonomous monitoring will be necessary to perform long-term in

Harmful Freshwater Algal Blooms, With an Emphasis on Cyanobacteria

Directory of Open Access Journals (Sweden)

Hans W. Paerl

2001-01-01

Full Text Available Suspended algae, or phytoplankton, are the prime source of organic matter supporting food webs in freshwater ecosystems. Phytoplankton productivity is reliant on adequate nutrient supplies; however, increasing rates of nutrient supply, much of it manmade, fuels accelerating primary production or eutrophication. An obvious and problematic symptom of eutrophication is rapid growth and accumulations of phytoplankton, leading to discoloration of affected waters. These events are termed blooms. Blooms are a prime agent of water quality deterioration, including foul odors and tastes, deoxygenation of bottom waters (hypoxia and anoxia, toxicity, fish kills, and food web alterations. Toxins produced by blooms can adversely affect animal (including human health in waters used for recreational and drinking purposes. Numerous freshwater genera within the diverse phyla comprising the phytoplankton are capable of forming blooms; however, the blue-green algae (or cyanobacteria are the most notorious bloom formers. This is especially true for harmful toxic, surface-dwelling, scum-forming genera (e.g., Anabaena, Aphanizomenon, Nodularia, Microcystis and some subsurface bloom-formers (Cylindrospermopsis, Oscillatoria that are adept at exploiting nutrient-enriched conditions. They thrive in highly productive waters by being able to rapidly migrate between radiance-rich surface waters and nutrient-rich bottom waters. Furthermore, many harmful species are tolerant of extreme environmental conditions, including very high light levels, high temperatures, various degrees of desiccation, and periodic nutrient deprivation. Some of the most noxious cyanobacterial bloom genera (e.g., Anabaena, Aphanizomenon, Cylindrospermopsis, Nodularia are capable of fixing atmospheric nitrogen (N2, enabling them to periodically dominate under nitrogen-limited conditions. Cyanobacteria produce a range of organic compounds, including those that are toxic to higher-ranked consumers, from

Toxicity of dissolved and precipitated aluminium to marine diatoms.

Science.gov (United States)

Gillmore, Megan L; Golding, Lisa A; Angel, Brad M; Adams, Merrin S; Jolley, Dianne F

2016-05-01

Localised aluminium contamination can lead to high concentrations in coastal waters, which have the potential for adverse effects on aquatic organisms. This research investigated the toxicity of 72-h exposures of aluminium to three marine diatoms (Ceratoneis closterium (formerly Nitzschia closterium), Minutocellus polymorphus and Phaeodactylum tricornutum) by measuring population growth rate inhibition and cell membrane damage (SYTOX Green) as endpoints. Toxicity was correlated to the time-averaged concentrations of different aluminium size-fractions, operationally defined as aluminium exposure varied between diatom species. C. closterium was the most sensitive species (10% inhibition of growth rate (72-h IC10) of 80 (55-100)μg Al/L (95% confidence limits)) while M. polymorphus (540 (460-600)μg Al/L) and P. tricornutum (2100 (2000-2200)μg Al/L) were less sensitive (based on measured total aluminium). Dissolved aluminium was the primary contributor to toxicity in C. closterium, while a combination of dissolved and precipitated aluminium forms contributed to toxicity in M. polymorphus. In contrast, aluminium toxicity to the most tolerant diatom P. tricornutum was due predominantly to precipitated aluminium. Preliminary investigations revealed the sensitivity of C. closterium and M. polymorphus to aluminium was influenced by initial cell density with aluminium toxicity significantly (paluminium toxicity to diatoms do not involve compromising the plasma membrane. These results indicate that marine diatoms have a broad range in sensitivity to aluminium with toxic mechanisms related to both dissolved and precipitated aluminium. Copyright © 2016 Elsevier B.V. All rights reserved.

Comparative study of hydrographic conditions for algal bloom formation in the coastal waters of east and west of Hong Kong during 1998

Science.gov (United States)

Fang, Hongda; Tang, Senming

2009-02-01

Phytoplankton abundance was found to be positively correlated with seasonal changes of seawater temperature in Port Shelter and Lamma Channel, Hong Kong in 1998. Rising water temperature from around 20°C to 25°C coincided with an increase in phytoplankton abundance at both locations. Heavy rains from June to September reduced salinity from 30 to 20, but the decrease in salinity was not correlated with a decline in phytoplankton abundance. In spring 1998, over 0.6×106 cells dm-3 and 0.1×106 cells dm-3 of the dinoflagellate, Gymnodinium mikimotoi Miyake et Kominami ex Oda occurred in the coastal waters of Port Shelter and Lamma Channel, respectively. High abundance of the dinoflagellate Ceratium furca (Ehr.) Claparede et Lachmann (>1×106 cells dm-3) produced long-lasting blooms in the waters of Port Shelter from September to October in 1998. The abundances of both diatoms and dinoflagellates were significantly lower in the waters of Lamma Channel than those in Port Shelter due to the less frequent blooms in 1998. Hydrographic conditions such as stable water masses and water column stratification were the main reasons for the differences in the algal abundance and bloom frequency found between the two locations since neither of the two areas appeared to be nutrient-limited. This type water condition for the formation of algal bloom in Port Shelter has not been reported previously and it is not a general case for many bays along China’s coast where algal bloom occurs as well.

Luminescence properties of a nanoporous freshwater diatom.

Science.gov (United States)

Goswami, Bondita; Choudhury, Amarjyoti; Buragohain, Alak K

2012-01-01

Freshwater diatom frustules show special optical properties. In this paper we observed luminescence properties of the freshwater diatom Cyclotella meneghiniana. To confirm the morphological properties we present scanning electron microscopy (SEM) images. X-ray diffraction (XRD) studies were carried out to visualize the structural properties of the frustules, confirming that silica present in diatom frustules crystallizes in an α-quartz structure. Study of the optical properties of the silica frustules of diatoms using ultra-violet-visible (UV-vis) spectroscopy and photoluminescence spectroscopy confirmed that the diatom C. meneghiniana shows luminescence in the blue region of the electromagnetic spectrum when irradiated with UV light. This property of diatoms can be exploited to obtain many applications in day-to-day life. Also, using time-resolved photoluminescence spectroscopy (TRPL) it was confirmed that this species of diatom shows bi-exponential decay. Copyright © 2011 John Wiley & Sons, Ltd.

Short time series analysis of Didymosphenia geminata blooming in the Oreti River, New Zealand

Science.gov (United States)

Garcia, T.; Kilroy, C.; Larned, S.; Packman, A. I.; Kumar, P.

2010-12-01

The mat-forming diatom Didymosphenia geminata was introduced to New Zealand in 2004, and subsequently spread to many rivers on the south island. D geminata mats are exceptionally dense and thick. Extensive blooms of this introduced organism have substantially modified the benthic environment in many New Zealand rivers, but the factors that contribute to D. geminata blooming are not well understood. We synthesized a sequence of observations of D. geminata areal coverage and thickness to examine physical and chemical controls on the growth and persistence of D germinata. We analyzed the best available time series on the distribution of this organism in New Zealand, observations in the Oreti River every 15 days spanning April 2006 to May 2007. During this period, mean D. geminata coverage of the river bed was ~52% and the mean mat thickness was ~6 mm. Relationships between time-series observations of D. geminata and 13 different physical and chemical variables were analyzed using linear and nonlinear methods. Areal cover and thickness of D geminata mats were found to be influenced by both slow and fast dynamic processes. The spread of the organism, in terms of % cover, was highly correlated with conductivity, ammonium, nitrate, dissolved oxygen, and total nitrogen with short time lags (fast dynamics). Moreover, water clarity, cloud cover, and flow were highly correlated with % cover with long time lags, indicating that these conditions exert long-term control on D. geminata growth. Areal coverage and thickness were found to be highly correlated, but the variables associated with slow and fast dynamics of these two measures were not identical. The variables found to be highly correlated with D. germinata thickness and represented fast dynamics were temperature, dissolved oxygen, conductivity, nitrate, and total nitrogen. Additionally, the variables influencing the slow dynamics of D. germinata thickness were flow, water clarity, turbidity and total phosphorous.

Abundance of bacterial and diatom fouling on various surfaces

Digital Repository Service at National Institute of Oceanography (India)

PrabhaDevi

Abundance of bacterial and diatom fouling on aluminium, fibreglass and stainless steel were studied from Dona Paula waters of the Zuari Estuary. Both these forms were reversibly attached in large numbers to surfaces during the initial 24 hr...

Harmful algal blooms

Digital Repository Service at National Institute of Oceanography (India)

Bhat, S.R.; PrabhaDevi; DeSouza, L.; Verlecar, X.N.; Naik, C.G.

as harmful algal bloom. Bloom formation is a natural process and it enhances biological productivity, but turns worrisome when caused by toxic species, leading to massive fish mortalities and hazards to human health. Incidences of'red tide' are increasing...

Diatoms from a peat bog on the Pešter plateau (southwestern Serbia: New records for diatom flora of Serbia

Directory of Open Access Journals (Sweden)

Vidaković Danijela

2016-01-01

Full Text Available The distribution of diatoms was studied in three types of diatom communities (epiphytes, benthos and plankton of a peat bog on the Pešter plateau. The observed diatom flora inhabited all investigated communities, comprising in total 250 taxa in 53 genera. Among them, 45 taxa were new records for the Serbian diatom flora. Identified taxa belonged to different groups of algae, however alkaliphile diatoms were dominant. New ecological data for Encyonopsis minuta, Pinnularia isostauron and P. marchica are presented here. All the diatoms were documented by light micrographs, and brief notes on their morphology, distribution and ecology are provided. [Projekat Ministarstva nauke Republike Srbije, br. TR 037009

Inhibition of marine algal photosynthesis by heavy metals

Energy Technology Data Exchange (ETDEWEB)

Overnell, J.

1976-12-03

A total of ninety phytoplankton species was recorded from June 1972 to May 1973 in samples taken weekly at Seal Beach, California. The study area was located in the vicinity of the mouth of the San Gabriel River, which is used as a site of discharge for heated effluents by two electric power plants and as a flood control channel by Los Angeles County. On a yearly basis, the two dominant algal groups were diatoms (forty-six species) and dinoflagellates (thirty-six species), accounting respectively for 64 percent and 30 percent of the total cell number, and for 20 percent and 79 percent of the total cell volume. The average phytoplankton concentration throughout the year was 180,000 cells l/sup -1/. A dinoflagellate bloom was observed in August between the two major peaks of diatoms which occurred during June--July and in late September. The five most common species (in order), Rhizosolenia delicatula, Chaetoceros curvisetus, Prorocentrum micans, Ceratium furca and Gymnodinium simplex, were present in more than 50 percent of the samples. The species diversity index (H') remained relatively stable during the year, showing no distinct seasonal pattern. Three interconnected associations of species were distinguished by x/sup 2/ analysis. The major group, composed mainly of dinoflagellates, was correlated with warm water conditions at Seal Beach. The other groups occurred at various times during the year, irrespective of seasonal variations, suggesting a possible mutualistic relationship between the species involved.

Warming affects growth rates and microcystin production in tropical bloom-forming microcystis strains

NARCIS (Netherlands)

Bui, Trung; Dao, Thanh Son; Vo, Truong Giang; Lürling, Miquel

2018-01-01

Warming climate is predicted to promote cyanobacterial blooms but the toxicity of cyanobacteria under global warming is less well studied. We tested the hypothesis that raising temperature may lead to increased growth rates but to decreased microcystin (MC) production in tropical Microcystis

Variação sazonal do fitoplâncton da região do Saco da Ribeira (lat. 23º30'S; long, 45º07'W, Ubatuba, Brasil Seasonal variation or phytoplankton in the region of Saco da Ribeira (lat. 23º30'S; long. 45º 07'W, Ubatuba, Brazil

Directory of Open Access Journals (Sweden)

Roberto Sassi

1982-01-01

temperatures ranged from 20ºC in August to 29.5ºC in March and salinities from 33.06 º/.. in March to 35.80 º/.. in January. The maximum salinity value observed in January near the bottom, associated with the thermal stratification found only during this month, seems to indicate an oceanic contribution to the enrichment of the local water mass. Pluviometric values ranged from 37.2 mm in August to 468.5 mm in January. Phytoplankton cell counts fluctuated from 64,000 to 1,028,000 cells/l and chlorophyll-a values varied from 0.52 to 6.86 µg/l. Maximum standing-stock was observed during summer, particularly in March, and it is probably associated with land drainage due to precipitation. A second bloom was observed in September 1975, and it is associated probably with the discontinuous impact of the wind. The phytoplankton populations were dominated by unidentified phytoflagellates, followed by diatoms and dinoflagellates. Nitzchia closterium and Thalassionema nitzschioides, along with Navicula sp., were the most representative species of diatoms. Among the dinoflagellates, Gymnodinium sp. was the most important. Blue-green algae and silicoflagellates were poorly represented. The diatoms Chaetoceros simplex, Chaetoceros spp, Nitzchia longissima, Nitzchia spp, Rhizosolenia delicatula and Rhizosolenia stolterfothi were found with high densities, only during bloom periods. The chlorophyll-a fractionation experiments demonstrated that organisms in size classe smaller than 20 µm represented, for all depths, between 54.93 and 98.15 º/.. of the total phytoplankton population.

Great Lakes Hyperspectral Water Quality Instrument Suite for Airborne Monitoring of Algal Blooms

Science.gov (United States)

Lekki, John; Leshkevich, George; Nguyen, Quang-Viet; Flatico, Joseph; Prokop, Norman; Kojima, Jun; Anderson, Robert; Demers, James; Krasowski, Michael

2007-01-01

NASA Glenn Research Center and NOAA Great Lakes Environmental Research Lab are collaborating to utilize an airborne hyperspectral imaging sensor suite to monitor Harmful Algal Blooms (HABs) in the western basin of Lake Erie. The HABs are very dynamic events as they form, spread and then disappear within a 4 to 8 week time period in late summer. They are a concern for human health, fish and wildlife because they can contain blue green toxic algae. Because of this toxicity there is a need for the blooms to be continually monitored. This situation is well suited for aircraft based monitoring because the blooms are a very dynamic event and they can spread over a large area. High resolution satellite data is not suitable by itself because it will not give the temporal resolution due to the infrequent overpasses of the quickly changing blooms. A custom designed hyperspectral imager and a point spectrometer mounted on aT 34 aircraft have been used to obtain data on an algal bloom that formed in the western basin of Lake Erie during September 2006. The sensor suite and operations will be described and preliminary hyperspectral data of this event will be presented

The bloom of the dinoflagellate (Noctiluca miliaris) in the North Eastern Arabian Sea: Ship and Satellite study

Digital Repository Service at National Institute of Oceanography (India)

Matondkar, S.G.P.; Basu, S.; Parab, S.G.; Pednekar, S.; Dwivedi, R.M.; Raman, M.; Goes, J.I.; Gomes, H.

The bloom of Noctiluca miliaris (a dinoflagellate) which appears in the form of a green tide was studied from 2003-2011. This bloom covered a large area of the Arabian Sea from the west coast of India to the coast of Oman. The bloom was easily...

Detection of macroalgae blooms by complex SAR imagery

International Nuclear Information System (INIS)

Shen, Hui; Perrie, William; Liu, Qingrong; He, Yijun

2014-01-01

Highlights: • Complex SAR imagery enables better recognition of macroalgae patches. • Combination of different information in SAR matrix forms new index factors. • Proposed index factors contribute to unsupervised recognition of macroalgae. -- Abstract: Increased frequency and enhanced damage to the marine environment and to human society caused by green macroalgae blooms demand improved high-resolution early detection methods. Conventional satellite remote sensing methods via spectra radiometers do not work in cloud-covered areas, and therefore cannot meet these demands for operational applications. We present a methodology for green macroalgae bloom detection based on RADARSAT-2 synthetic aperture radar (SAR) images. Green macroalgae patches exhibit different polarimetric characteristics compared to the open ocean surface, in both the amplitude and phase domains of SAR-measured complex radar backscatter returns. In this study, new index factors are defined which have opposite signs in green macroalgae-covered areas, compared to the open water surface. These index factors enable unsupervised detection from SAR images, providing a high-resolution new tool for detection of green macroalgae blooms, which can potentially contribute to a better understanding of the mechanisms related to outbreaks of green macroalgae blooms in coastal areas throughout the world ocean

Summer Epiphytic Diatoms from Terra Nova Bay and Cape Evans (Ross Sea, Antarctica) - A Synthesis and Final Conclusions

Science.gov (United States)

Majewska, Roksana; Convey, Peter; De Stefano, Mario

2016-01-01

Despite recent advances in polar marine biology and related fields, many aspects of the ecological interactions that are crucial for the functioning of Antarctic shallow water habitats remain poorly understood. Although epiphytic diatoms play an essential role in the Antarctic marine food web, basic information regarding their ecology, biodiversity and biogeography is largely unavailable. Here, we synthesise studies on Ross Sea epiphytic diatoms collected during 11 summer Antarctic expeditions between the years 1989/90 and 2011/12, presenting a full list of diatom taxa associated with three macroalgal species (Iridaea cordata, Phyllophora antarctica, and Plocamium cartilagineum) and their epiphytic sessile fauna. Diatom communities found during the three summer months at various depths and sampling stations differed significantly in terms of species composition, growth form structure and abundances. Densities ranged from 21 to >8000 cells mm-2, and were significantly higher on the surface of epiphytic micro-fauna than on any of the macroalgal species examined. Generally, host organisms characterized by higher morphological heterogeneity (sessile microfauna, ramified Plocamium) supported richer diatom communities than those with more uniform surfaces (Iridaea). Differences between epiphytic communities associated with different macroalgae were reflected better in species composition than in growth form structure. The latter changed significantly with season, which was related strongly to the changing ice conditions. A general trend towards an increasing number of erect forms in deeper waters and tube-dwelling diatoms in the shallowest sites (2–5 m) was also observed. This study explores further important and largely previously unknown aspects of relationships and interactions between Antarctic epiphytic diatoms and their micro- and macro-environments. PMID:27078637

[Research advances in heavy metals pollution ecology of diatom].

Science.gov (United States)

Ding, Teng-Da; Ni, Wan-Min; Zhang, Jian-Ying

2012-03-01

Diatom, due to its high sensitivity to environmental change, is one of the bio-indicators of aquatic ecosystem health, and some typical diatom species have been applied to indicate the heavy metals pollution of water body. With the focus on the surface water heavy metals pollution, this paper reviewed the research advances in the toxic effect of heavy metals pollution on diatom, biosorption and bioaccumulation of heavy metals by diatom, ecological adaptation mechanisms of diatom to heavy metals pollution, and roles of diatom as bio-indicator and in ecological restoration of heavy metals pollution. The growth tendency of diatom and the morphological change of frustule under heavy metals pollution as well as the differences in heavy metals biosorption and bioaccumulation by diatom, the ecological adaptation mechanisms of diatom on heavy metals surface complexation and ion exchange, and the roles of diatom as bio-indicator and in ecological restoration of heavy metals polluted water body were also discussed. This review could provide scientific evidences for the prevention of aquatic ecosystems heavy metals pollution and related early warning techniques.

Sampler collection gadget for epilithic diatoms.

Science.gov (United States)

Salomoni, S E; Torgan, L C; Rocha, O

2007-11-01

This work present a new gadget for sampling epilithic diatoms from both lentic and lotic enviroments. The sampler consists of a polystyrene cylinder, left to float on the surface of the water, to which stone substrates are attached. This epilithic diatom sampler (EDS) can be used to detect spatial and temporal richness and density variation in the study of the diatom community, as well as in water quality monitoring.

Shared Epizoic Taxa and Differences in Diatom Community Structure Between Green Turtles (Chelonia mydas) from Distant Habitats.

Science.gov (United States)

Majewska, Roksana; de Vijver, Bart Van; Nasrolahi, Ali; Ehsanpour, Maryam; Afkhami, Majid; Bolaños, Federico; Iamunno, Franco; Santoro, Mario; De Stefano, Mario

2017-11-01

The first reports of diatoms growing on marine mammals date back to the early 1900s. However, only recently has direct evidence been provided for similar associations between diatoms and sea turtles. We present a comparison of diatom communities inhabiting carapaces of green turtles Chelonia mydas sampled at two remote sites located within the Indian (Iran) and Atlantic (Costa Rica) Ocean basins. Diatom observations and counts were carried out using scanning electron microscopy. Techniques involving critical point drying enabled observations of diatoms and other microepibionts still attached to sea turtle carapace and revealed specific aspects of the epizoic community structure. Species-poor, well-developed diatom communities were found on all examined sea turtles. Significant differences between the two host sea turtle populations were observed in terms of diatom abundance and their community structure (including growth form structure). A total of 12 and 22 diatom taxa were found from sea turtles in Iran and Costa Rica, respectively, and eight of these species belonging to Amphora, Chelonicola, Cocconeis, Navicula, Nitzschia and Poulinea genera were observed in samples from both locations. Potential mechanisms of diatom dispersal and the influence of the external environment, sea turtle behaviour, its life stage, and foraging and breeding habitats, as well as epibiotic bacterial flora on epizoic communities, are discussed.

Evaluation of the nutritional quality of Chaetoceros muelleri Schütt (Chaetocerotales: Chaetocerotaceae and Isochrysis sp. (Isochrysidales: isochrysidaceae grown outdoors for the larval development of Litopenaeus vannamei (Boone, 1931 (Decapoda: Penaeidae

Directory of Open Access Journals (Sweden)

Rodríguez Erika O.

2012-01-01

Full Text Available The biomass, proximal composition and fatty acid profile of Isochrysis sp., Chaetoceros muelleri and their mixture, grown under greenhouse conditions, were evaluated. The nutritional value of both species supplied as the monoalgal (Chaetoceros muelleri: Diet I, and Isochrysis sp. Diet II and mixed diet (Diet III for larval Litopenaeus vannamei was also assessed on the basis of the development and biochemical composition of the larvae. The highest protein levels were obtained in Diets I and II (40% and 35%, respectively. No significant differences in larval survival were found among the diets; however, larvae fed on Diet II had the lowest mean larval length.

Sampler collection gadget for epilithic diatoms

Directory of Open Access Journals (Sweden)

SE. Salomoni

Full Text Available This work present a new gadget for sampling epilithic diatoms from both lentic and lotic enviroments. The sampler consists of a polystyrene cylinder, left to float on the surface of the water, to which stone substrates are attached. This epilithic diatom sampler (EDS can be used to detect spatial and temporal richness and density variation in the study of the diatom community, as well as in water quality monitoring.

Diatom assemblage in a tropical lake of northeastern Brazil

Directory of Open Access Journals (Sweden)

Lilian Rodrigues do Nascimento

2010-02-01

Full Text Available The composition and spatial variation of diatom assemblage in surface sediments of Caçó Lake (shallow, mesotrophic and weakly acid lake - Maranhão State, Brazil were analyzed in order to know the distribution pattern of the species along the lake during rainy season (April 1999. Four zones were established in the lake based on 21 diatoms species and habitat affinities. The first three zones (prime three meters deep to six meters deep were marked by the occurrence of Pinnularia gigas, Frustulia rhomboides, Encyonopsis krasskei, Eunotia camelus, E. femoriformis and E. monodon. Zone IV (seven to nine meters deep was inhabited mainly by Surirella biseriata and Fragilariforma floridana. During the beginning of the rainy season, the diatom assemblage in Caçó Lake was composed mainly by benthic and epiphytic forms that reflected the low lake levels and the abundance of littoral vegetation present in this lake.Com o objetivo de se conhecer a dinâmica espacial e a distribuição das diatomáceas contidas no sedimento superficial do lago Caçó, durante o período de chuvas (abril de 1999 foram realizadas coletas em um "transect" horizontal. A partir da observação destas coletas efetuadas a cada 1 metro pode-se observar que a distribuição das diatomáceas esteve fortemente ligada a ocorrência do banco de macrófitas da sua margem, com a ocorrência maciça das espécies epifíticas e bentônicas. A análise de agrupamento de dados permitiu uma melhor visualização, da sua distribuição a cada profundidade e também das associações específicas em cada zona. Os resultados deste estudo permitiram concluir que a ocorrência e distribuição das diatomáceas do Lago Caçó está fortemente ligada ao banco de macrófitas localizado em suas margens, definindo assim zonas características dentro do lago.

Didymosphenia geminata in the Upper Esopus Creek: Current Status, Variability, and Controlling Factors

OpenAIRE

George, Scott Daniel; Baldigo, Barry Paul

2015-01-01

In May of 2009, the bloom-forming diatom Didymosphenia geminata was first identified in the Upper Esopus Creek, a key tributary to the New York City water-supply and a popular recreational stream. The Upper Esopus receives supplemental flows from the Shandaken Portal, an underground aqueduct delivering waters from a nearby basin. The presence of D. geminata is a concern for the local economy, water supply, and aquatic ecosystem because nuisance blooms have been linked to degraded stream condi...

Colloquium on diatom-copepod interactions

DEFF Research Database (Denmark)

Paffenhofer, G.A.; Ianora, A.; Miralto, A.

2005-01-01

in situ were also addressed. During the plenary session, the most recent advances on this topic were presented. The plenary session was followed by 3 working groups on (1) production of aldehydes by phytoplankton, (2) toxic and nutritional effects of diatoms on zooplankton, and (3) the chemistry of diatom...

Controlling dynamics in diatomic systems

Indian Academy of Sciences (India)

WINTEC

Abstract. Controlling molecular energetics using laser pulses is exemplified for nuclear motion in two different diatomic systems. The problem of finding the optimized field for maximizing a desired quantum dynamical target is formulated using an iterative method. The method is applied for two diatomic sys- tems, HF and OH.

Seasonal cooling and blooming in tropical oceans

Science.gov (United States)

Longhurst, Alan

1993-11-01

The relative importance of tropical pelagic algal blooms in not yet fully appreciated and the way they are induced not well understood. The tropical Atlantic supports pelagic blooms together equivalent to the North Atlantic spring bloom. These blooms are driven by thermocline tilting, curl of wind stress and eddy upwelling as the ocean responds to intensified basin-scale winds in boreal summer. The dimensions of the Pacific Ocean are such that seasonal thermocline tilting does not occur, and nutrient conditions are such that tilting might not induce bloom, in any case. Divergence at the equator is a separate process that strengthens the Atlantic bloom, is more prominent in the eastern Pacific, and in the Indian Ocean induces a bloom only in the western part of the ocean. Where western jet currents are retroflected from the coast off Somalia and Brazil, eddy upwelling induces prominent blooms. In the eastward flow of the northern equatorial countercurrents, positive wind curl stress induces Ekman pumping and the induction of algal blooms aligned with the currents. Some apparent algal bloom, such as that seen frequently in CZCS images westwards from Senegal, must be due to interference from airborne dust.

High-resolution paleoclimatology of the Santa Barbara Basin during the Medieval Climate Anomaly and early Little Ice Age based on diatom and silicoflagellate assemblages in Kasten core SPR0901-02KC

Science.gov (United States)

Barron, John A.; Bukry, David B.; Hendy, Ingrid L.

2015-01-01

Diatom and silicoflagellate assemblages documented in a high-resolution time series spanning 800 to 1600 AD in varved sediment recovered in Kasten core SPR0901-02KC (34°16.845’ N, 120°02.332’ W, water depth 588 m) from the Santa Barbara Basin (SBB) reveal that SBB surface water conditions during the Medieval Climate Anomaly (MCA) and the early part of the Little Ice Age (LIA) were not extreme by modern standards, mostly falling within one standard deviation of mean conditions during the pre anthropogenic interval of 1748 to 1900. No clear differences between the character of MCA and the early LIA conditions are apparent. During intervals of extreme droughts identified by terrigenous proxy scanning XRF analyses, diatom and silicoflagellate proxies for coastal upwelling typically exceed one standard deviation above mean values for 1748-1900, supporting the hypothesis that droughts in southern California are associated with cooler (or La Niña-like) sea surface temperatures (SSTs). Increased percentages of diatoms transported downslope generally coincide with intervals of increased siliciclastic flux to the SBB identified by scanning XRF analyses. Diatom assemblages suggest only two intervals of the MCA (at ~897 to 922 and ~1151 to 1167) when proxy SSTs exceeded one standard deviation above mean values for 1748 to 1900. Conversely, silicoflagellates imply extreme warm water events only at ~830 to 860 (early MCA) and ~1360 to 1370 (early LIA) that are not supported by the diatom data. Silicoflagellates appear to be more suitable for characterizing average climate during the 5 to 11 year-long sample intervals studied in the SPR0901-02KC core than diatoms, probably because diatom relative abundances may be dominated by seasonal blooms of a particular year.

Variation partitioning of diatom species data matrices: Understanding the influence of multiple factors on benthic diatom communities in tropical streams

Energy Technology Data Exchange (ETDEWEB)

Bere, Taurai, E-mail: tbere2015@gmail.com; Mangadze, Tinotenda; Mwedzi, Tongai

2016-10-01

Elucidating the confounding influence of multiple environmental factors on benthic diatom communities is important in developing water quality predictive models for better guidance of stream management efforts. The objective of this study was to explore the relative impact of metal pollution and hydromorphological alterations in, addition to nutrient enrichment and organic pollution, on diatom taxonomic composition with the view to improve stream diatom-based water quality inference models. Samples were collected twice at 20 sampling stations in the tropical Manyame Catchment, Zimbabwe. Diatom, macroinvertebrate communities and environmental factors were sampled and analysed. The variations in diatom community composition explained by different categories of environmental factors were analysed using canonical correspondence analysis using variance partitioning (partial CCA). The following variations were explained by the different predictor matrices: nutrient levels and organic pollution - 10.4%, metal pollution - 8.3% and hydromorphological factors - 7.9%. Thus, factors other than nutrient levels and organic pollution explain additional significant variation in these diatom communities. Development of diatom-based stream water quality inference models that incorporate metal pollution and hydromorphological alterations, where these are key issues, is thus deemed necessary. - Highlights: • Confounding influences of multiple environmental factors on diatom communities are elucidated. • Variation explained: nutrients + organic pollution - 10.4%, metals - 8.3% and hydromorphological factors - 7.9%. • Calibration of existing or development of new indices may be necessary.

Variation partitioning of diatom species data matrices: Understanding the influence of multiple factors on benthic diatom communities in tropical streams

International Nuclear Information System (INIS)

Bere, Taurai; Mangadze, Tinotenda; Mwedzi, Tongai

2016-01-01

Elucidating the confounding influence of multiple environmental factors on benthic diatom communities is important in developing water quality predictive models for better guidance of stream management efforts. The objective of this study was to explore the relative impact of metal pollution and hydromorphological alterations in, addition to nutrient enrichment and organic pollution, on diatom taxonomic composition with the view to improve stream diatom-based water quality inference models. Samples were collected twice at 20 sampling stations in the tropical Manyame Catchment, Zimbabwe. Diatom, macroinvertebrate communities and environmental factors were sampled and analysed. The variations in diatom community composition explained by different categories of environmental factors were analysed using canonical correspondence analysis using variance partitioning (partial CCA). The following variations were explained by the different predictor matrices: nutrient levels and organic pollution - 10.4%, metal pollution - 8.3% and hydromorphological factors - 7.9%. Thus, factors other than nutrient levels and organic pollution explain additional significant variation in these diatom communities. Development of diatom-based stream water quality inference models that incorporate metal pollution and hydromorphological alterations, where these are key issues, is thus deemed necessary. - Highlights: • Confounding influences of multiple environmental factors on diatom communities are elucidated. • Variation explained: nutrients + organic pollution - 10.4%, metals - 8.3% and hydromorphological factors - 7.9%. • Calibration of existing or development of new indices may be necessary.

Diatom genomics: genetic acquisitions and mergers.

Science.gov (United States)

Nisbet, R Ellen R; Kilian, Oliver; McFadden, Geoffrey I

2004-12-29

Diatom algae arose by two-step endosymbiosis. The complete genome of the diatom Thalassiosira pseudonana has now been sequenced, allowing us to reconstruct the remarkable intracellular gene transfers that occurred during this convoluted cellular evolution.

Coupled states approximation for scattering of two diatoms

International Nuclear Information System (INIS)

Heil, T.G.; Green, S.; Kouri, D.J.

1978-01-01

The coupled states (CS) approximation is developed in detail for the general case of two colliding diatomic molecules. The high energy limit of the exact Lippmann-Schwinger equation is used to obtain the CS equations so that the sufficiency conditions of Kouri, Heil, and Shimoni apply. In addition, care is taken to ensure correct treatment of parity in the CS, as well as correct labeling of the CS by an effective orbital angular momentum. The analysis follows that given by Shimoni and Kouri for atom-diatom collisions where the coupled rotor angular momentum j 12 and projection lambda 12 replace the single diatom angular momentum j and projection lambda. The result is an expression for the differential scattering amplitude which is a generalization of the highly successful McGuire-Kouri differential scattering amplitude for atom-diatom collisions. Also, the opacity function is found to be a generalization of the Clebsch-Gordon weight atom-diatom expression of Shimoni and Kouri. The diatom-diatom CS body frame T matrix T/sup J/(j 1 'j 2 'j 12 'lambda 12 'vertical-bar j 1 j 2 j 12 lambda 12 ) is also found to be nondiagonal in lambda' 12 ,lambda 12 , just as in the atom-diatom case. The parity and identical molecule interchange symmetries are also considered in detail in both the exact close coupling and CS approximations. Symmetrized expressions for all relevant quantities are obtained, along with the symmetrized coupled equations one must solve. The properly labeled and symmetrized CS equations have not been derived before this present work. The present correctly labeled CS theory is tested computationally by applications to three different diatom-diatom potentials. First we carry out calculations for para-para, ortho-ortho, and ortho-para H 2 -H 2 collisions using the experimental potential of Farrar and Lee

Nutrient control of cyanobacterial blooms in the Baltic Sea

NARCIS (Netherlands)

Stal, L.J.; Staal, M.J.; Villbrandt, M.

1999-01-01

Cyanobacterial blooms in the Baltic Sea were investigated with respect to growth Limitation and nitrogen fixation. The community was composed predominantly of Synechococcus spp., and large, heterocystous, nitrogen-fixing cyanobacteria (Aphanizomenon spp, and Nodularia spp.), that usually formed

Mitigating cyanobacterial blooms: how effective are 'effective microorganisms'?

NARCIS (Netherlands)

Lürling, M.F.L.L.W.; Tolman, Y.; Euwe, M.

2009-01-01

This study examined the effects of 'Effective Microorganisms (EM)' on the growth of cyanobacteria, and their ability to terminate cyanobacterial blooms. The EM was tested in the form of 'mudballs' or 'Bokashi-balls', and as a suspension (EM-A) in laboratory experiments. No growth inhibition was

Fatty acid composition of Spirulina sp., Chlorella sp. and Chaetoceros sp. microalgae and introduction as potential new sources to extinct omega 3 and omega 6

Directory of Open Access Journals (Sweden)

Homan Gorjzdadeh

2016-05-01

Full Text Available Background: This study was carried out to determine the oil fatty acids from two special species of microalgae; Spirulina sp.,Chlorella sp. and also Chaetoceros sp. collected from Bahmanshir River. Materials and Methods: Sampling of microalgae Chaetoceros sp. from Bahmanshir River was under taken using bottle samplers during spring season of 2013. Microalgae Spirulina sp. and Chlorella sp. were supplied from Shrimp Research Institute of Iran in Bushehr Province. Samples then were cultured under controlled laboratory conditions and mass culture for 100 liters was undertaken. Isolation of microalgae species from water of cultured media was carried out using filtration and centrifugation methods. The fatty acid compositions were determined by Gas – FID chromatography. Results: Results showed that regarding Saturated Fatty Acids (SFA obtained from purified culture of Chaetoceros sp., Spirulina sp. and Chlorella sp. the maximum amount of total fatty acids were belonged to palmitic acids (C16:0 with 15.21%, 30.1% and 25.17% of total fatty acids  respectively. Analysis of Mono Unsaturated Fatty Acids (MUFA showed that in the Oleic acid was maximum amount of 34% in Spirulina sp. In addition the amount of MUFA in Chlorella sp. was 16.37% of total fatty acids. On the other hand the amount of palmeotic acid in purified culture of Chaetoceros sp. was 30.33% from total content of fatty acids. Analysis of Poly Unsaturated Fatty Acids (PUFA, Linoleic acid (C18:2 (Omega 6, revealed maximum percentage in Spirulina sp. with 18.8%. Results of Alpha linoleic acid (C18:3 (Omega3 analysis showed maximum amount of 9.66% in Chlorella sp. compared to other microalgae with lower omega 3 contents. Spirulina sp. contained maximum amount of Linoleic acid (C18:2 with 18.8% of total fatty acids. Therefore, Spirulina sp. can be considered as a rich source of omega 6 for the purpose of fatty acid extractions. The presence of PUFA in Chlorella sp. and Spirulina sp. was

Greener on the Other Side: How Increased Urea Use may Promote Cyanobacterial Blooms

Science.gov (United States)

Erratt, K. J.; Creed, I. F.; Trick, C. G.

2017-12-01

The frequency of freshwater cyanobacterial blooms is on the rise in temperate regions around the world. The widespread use of chemical fertilizers linked to modern agricultural practices has enhanced the fertility of surface waters promoting the expansion of cyanobacteria dominated harmful algal blooms. While phosphorus (P) has been recognized as the principal agent regulating phytoplankton productivity in inland waters, elevated P is not the universal trigger for bloom initiation. P fertilizer applications across the globe have been outpaced by nitrogen (N) fertilizer use. Not only has the load of N entering surface waters increased, but its chemical composition has been altered. The use of inorganic-N fertilizers has been waned in favor of urea-based products, with urea now accounting for more than half of total N-fertilizer applications worldwide. This contemporary shift in fertilizer usage has coincided with the rise of cyanobacteria dominated harmful algal blooms in freshwaters. Here, we examined the relative success of urea as a N-source relative to inorganic N forms (NO3-, NH4+) for three common bloom-forming species of cyanobacteria: Microcystis aeruginosa, Dolichospermum flos-aque, and Synechococcus sp. We found that (1) urea was consistently drawdown more rapidly relative to inorganic N substrates, suggesting that cyanobacteria exhibit a preference for urea over inorganic N forms; (2) cyanobacteria consume urea in excess of cellular requirements; and (3) urea may offer cyanobacteria a competitive edge over eukaryotic algae by enhancing light absorption capabilities. As we push forward into the 21st century, our reliance on urea-based fertilizers is projected to escalate and it is critical that we understand the unintended consequences urea discharge could be having on receiving freshwaters.

Applications of Diatoms as Potential Microalgae in Nanobiotechnology

Directory of Open Access Journals (Sweden)

Ahmad Yari Khosroushahi

2012-05-01

Full Text Available Introduction: Diatoms are single cell eukaryotic microalgae, which present in nearly every water habitat make them ideal tools for a wide range of applications such as oil explora­tion, forensic examination, environmental indication, biosilica pattern generation, toxicity testing and eutrophication of aqueous ecosystems. Methods: Essential information on diatoms were reviewed and discussed towards impacts of diatoms on biosynthesis and bioremediation. Results: In this review, we present the recent progress in this century on the application of diatoms in waste degradation, synthesis of biomaterial, biomineraliza­tion, toxicity and toxic effects of mineral elements evaluations. Conclusion: Diatoms can be considered as metal toxicity bioindicators and they can be applied for biomineralization, synthesis of biomaterials, and degradation of wastes.

Microplanktonic community structure in a coastal system relative to a Phaeocystis bloom inferred from morphological and tag pyrosequencing methods.

Directory of Open Access Journals (Sweden)

Sébastien Monchy

Full Text Available BACKGROUND: Massive phytoplankton blooms, like the recurrent Phaeocystis proliferation observed every year in the Eastern English Channel (EEC, have a significant influence on the overall planktonic community structure and their food web dynamics. As well as being an important area for local fisheries, the EEC is an ideal ecosystem for work on microbial diversity. This is because, although its environmental context is relatively complex, it is reasonably well understood due to several years of monitoring and morphological observations of its planktonic organisms. The objective of our study was to better understand the under-explored microbial eukaryotic diversity relative to the Phaeocystis bloom. METHODOLOGY AND PRINCIPAL FINDINGS: The community structure of microplankton (diatoms, haptophytes, ciliates and dinoflagellates was studied through morphological observations and tag pyrosequencing. During the annual Phaeocystis spring bloom, the phytoplankton biomass increased by 34-fold, while the microzooplankton biomass showed a 4-fold increase, representing on average about 4.6% of the biomass of their phytoplankton prey. Tag pyrosequencing unveiled an extensive diversity of Gymnodiniaceae, with G. spirale and G. fusiformis representing the most abundant reads. An extended diversity of Phaeocystales, with partial 18S rDNA genes sequence identity as low as 85% was found, with taxa corresponding to P. globosa, but also to unknown Phaeocystaceae. CONCLUSIONS: Morphological analyses and pyrosequencing were generally in accordance with capturing frequency shifts of abundant taxa. Tag pyrosequencing allowed highlighting the maintenance of microplankton diversity during the Phaeocystis bloom and the increase of the taxa presenting low number of reads (minor taxa along with the dominant ones in response to biotic and/or abiotic changing conditions. Although molecular approaches have enhanced our perception on diversity, it has come to light that the

Structure-based optics of centric diatom frustules: modulation of the in vivo light field for efficient diatom photosynthesis.

Science.gov (United States)

Goessling, Johannes W; Su, Yanyan; Cartaxana, Paulo; Maibohm, Christian; Rickelt, Lars F; Trampe, Erik C L; Walby, Sandra L; Wangpraseurt, Daniel; Wu, Xia; Ellegaard, Marianne; Kühl, Michael

2018-07-01

The optical properties of diatom silicate frustules inspire photonics and nanotechnology research. Whether light interaction with the nano-structure of the frustule also affects diatom photosynthesis has remained unclear due to lack of information on frustule optical properties under more natural conditions. Here we demonstrate that the optical properties of the frustule valves in water affect light harvesting and photosynthesis in live cells of centric diatoms (Coscinodiscus granii). Microscale cellular mapping of photosynthesis around localized spot illumination demonstrated optical coupling of chloroplasts to the valve wall. Photonic structures of the three-layered C. granii valve facilitated light redistribution and efficient photosynthesis in cell regions distant from the directly illuminated area. The different porous structure of the two sides of the valve exhibited photon trapping and forward scattering of blue light enhancing photosynthetic active radiation inside the cell. Photonic structures of diatom frustules thus alter the cellular light field with implications on diatom photobiology. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

A comparison of morphological and molecular-based surveys to estimate the species richness of Chaetoceros and Thalassiosira (bacillariophyta, in the Bay of Fundy.

Directory of Open Access Journals (Sweden)

Sarah E Hamsher

Full Text Available The goal of this study was to compare the ability of morphology and molecular-based surveys to estimate species richness for two species-rich diatom genera, Chaetoceros Ehrenb. and Thalassiosira Cleve, in the Bay of Fundy. Phytoplankton tows were collected from two sites at intervals over two years and subsampled for morphology-based surveys (2010, 2011, a culture-based DNA reference library (DRL; 2010, and a molecular-based survey (2011. The DRL and molecular-based survey utilized the 3' end of the RUBISCO large subunit (rbcL-3P to identify genetic species groups (based on 0.1% divergence in rbcL-3P, which were subsequently identified morphologically to allow comparisons to the morphology-based survey. Comparisons were compiled for the year (2011 by site (n = 2 and by season (n = 3. Of the 34 taxa included in the comparisons, 50% of taxa were common to both methods, 35% were unique to the molecular-based survey, and 12% were unique to the morphology-based survey, while the remaining 3% of taxa were unidentified genetic species groups. The morphology-based survey excelled at identifying rare taxa in individual tow subsamples, which were occasionally missed with the molecular approach used here, while the molecular methods (the DRL and molecular-based survey, uncovered nine cryptic species pairs and four previously overlooked species. The last mentioned were typically difficult to identify and were generically assigned to Thalassiosira spp. during the morphology-based survey. Therefore, for now we suggest a combined approach encompassing routine morphology-based surveys accompanied by periodic molecular-based surveys to monitor for cryptic and difficult to identify taxa. As sequencing technologies improve, molecular-based surveys should become routine, leading to a more accurate representation of species composition and richness in monitoring programs.

Diatom community structure on in-service cruise ship hulls.

Science.gov (United States)

Hunsucker, Kelli Zargiel; Koka, Abhishek; Lund, Geir; Swain, Geoffrey

2014-10-01

Diatoms are an important component of marine biofilms found on ship hulls. However, there are only a few published studies that describe the presence and abundance of diatoms on ships, and none that relate to modern ship hull coatings. This study investigated the diatom community structure on two in-service cruise ships with the same cruise cycles, one coated with an antifouling (AF) system (copper self-polishing copolymer) and the other coated with a silicone fouling-release (FR) system. Biofilm samples were collected during dry docking from representative areas of the ship and these provided information on the horizontal and vertical zonation of the hull, and intact and damaged coating and niche areas. Diatoms from the genera Achnanthes, Amphora and Navicula were the most common, regardless of horizontal ship zonation and coating type. Other genera were abundant, but their presence was more dependent on the ship zonation and coating type. Samples collected from damaged areas of the hull coating had a similar community composition to undamaged areas, but with higher diatom abundance. Diatom fouling on the niche areas differed from that of the surrounding ship hull and paralleled previous studies that investigated differences in diatom community structure on static and dynamically exposed coatings; niche areas were similar to static immersion and the hull to dynamic immersion. Additionally, diatom richness was greater on the ship with the FR coating, including the identification of several new genera to the biofouling literature, viz. Lampriscus and Thalassiophysa. These results are the first to describe diatom community composition on in-service ship hulls coated with a FR system. This class of coatings appears to have a larger diatom community compared to copper-based AF systems, with new diatom genera that have the ability to stick to ship hulls and withstand hydrodynamic forces, thus creating the potential for new problematic species in the biofilm.

Relationship between diatom communities and environmental ...

African Journals Online (AJOL)

ajl yemi

2011-11-30

Nov 30, 2011 ... The relationship between diatom species and measured environmental variables was explored at different sites of Honghe wetland region located in northeastern China. Planktonic and epiphytic diatom assemblages in the wetland were identified from May to October of 2007 and 2008. Their relationships.

Relationship between diatom communities and environmental ...

African Journals Online (AJOL)

Abstract. The relationship between diatom species and measured environmental variables was explored at different sites of Honghe wetland region located in northeastern China. Planktonic and epiphytic diatom assemblages in the wetland were identified from May to October of 2007 and 2008. Their relationships with ...

Selective silicate-directed motility in diatoms

DEFF Research Database (Denmark)

Bondoc, Karen Grace V.; Heuschele, Jan; Gillard, Jeroen

2016-01-01

the major sink in the global Si cycle. Dissolved silicic acid (dSi) availability frequently limits diatom productivity and influences species composition of communities. We show that benthic diatoms selectively perceive and behaviourally react to gradients of dSi. Cell speed increases under d...

A dinoflagellate Cochlodinium geminatum bloom in the Zhujiang (Pearl) River estuary in autumn 2009

Science.gov (United States)

Ke, Zhixin; Huang, Liangmin; Tan, Yehui; Song, Xingyu

2012-05-01

A severe Cochlodinium geminatum red tide (>300 km2) was observed in the Zhujiang (Pearl) River estuary, South China Sea in autumn 2009. We evaluated the environmental conditions and phytoplankton community structure during the outbreak. The red tide water mass had significantly higher dissolved inorganic phosphate (DIP), ammonia, and temperature, but significantly lower nitrite, nitrate, dissolved inorganic nitrogen (DIN), and DIN/DIP relative to the non-red-tide zones. The phytoplankton assemblage was dominated by dinoflagellates and diatoms during the red tide. C. geminatum was the most abundant species, with a peak density of 4.13×107 cell/L, accounting for >65% of the total phytoplankton density. The DIN/DIP ratio was the most important predictor of species, accounting for 12.45% of the total variation in the phytoplankton community. Heavy phosphorus loading, low precipitation, and severe saline intrusion were likely responsible for the bloom of C. geminatum.

Intracellular Nitrate of Marine Diatoms as a Driver of Anaerobic Nitrogen Cycling in Sinking Aggregates

Directory of Open Access Journals (Sweden)

Anja Kamp

2016-11-01

Full Text Available Diatom-bacteria aggregates are key for the vertical transport of organic carbon in the ocean. Sinking aggregates also represent pelagic microniches with intensified microbial activity, oxygen depletion in the center, and anaerobic nitrogen cycling. Since some of the aggregate-forming diatom species store nitrate intracellularly, we explored the fate of intracellular nitrate and its availability for microbial metabolism within anoxic diatom-bacteria aggregates. The ubiquitous nitrate-storing diatom Skeletonema marinoi was studied as both axenic cultures and laboratory-produced diatom-bacteria aggregates. Stable 15N isotope incubations under dark and anoxic conditions revealed that axenic S. marinoi is able to reduce intracellular nitrate to ammonium that is immediately excreted by the cells. When exposed to a light:dark cycle and oxic conditions, S. marinoi stored nitrate intracellularly in concentrations > 60 mmol L-1 both as free-living cells and associated to aggregates. Intracellular nitrate concentrations exceeded extracellular concentrations by three orders of magnitude. Intracellular nitrate was used up within 2-3 days after shifting diatom-bacteria aggregates to dark and anoxic conditions. Thirty-one percent of the diatom-derived nitrate was converted to nitrogen gas, indicating that a substantial fraction of the intracellular nitrate pool of S. marinoi becomes available to the aggregate-associated bacterial community. Only 5% of the intracellular nitrate was reduced to ammonium, while 59% was recovered as nitrite. Hence, aggregate-associated diatoms accumulate nitrate from the surrounding water and sustain complex nitrogen transformations, including loss of fixed nitrogen, in anoxic, pelagic microniches. Additionally, it may be expected that intracellular nitrate not converted before the aggregates have settled onto the seafloor could fuel benthic nitrogen transformations.

Computation of diatomic molecular spectra for selected transitions of aluminum monoxide, cyanide, diatomic carbon, and titanium monoxide

Energy Technology Data Exchange (ETDEWEB)

Parigger, Christian G., E-mail: cparigge@tennessee.edu [The University of Tennessee/University of Tennessee Space Institute, Center for Laser Applications, 411 B.H. Goethert Parkway, Tullahoma, TN 37388-9700 (United States); Woods, Alexander C.; Surmick, David M.; Gautam, Ghaneshwar; Witte, Michael J. [The University of Tennessee/University of Tennessee Space Institute, Center for Laser Applications, 411 B.H. Goethert Parkway, Tullahoma, TN 37388-9700 (United States); Hornkohl, James O. [Hornkohl Consulting, Tullahoma, TN 37388 (United States)

2015-05-01

Laser ablation studies with laser-induced breakdown spectroscopy (LIBS) typically emphasize atomic species yet fingerprints from molecular species can occur subsequently or concurrently. In this work, selected molecular transitions of aluminum monixide (AlO), diatomic carbon (C{sub 2}), cyanide (CN), and titanium monoxide (TiO) are accurately computed. Line strength tables are used to describe the radiative transitions of diatomic molecules primarily in the visible, optical region. Details are elaborated of the computational procedure that allows one to utilize diatomic spectra as a predictive and as a diagnostic tool. In order to create a computed spectrum, the procedure requires information regarding the temperature of the diatomic transitions along with other input such as the spectral resolution. When combined with a fitting algorithm to optimize such parameters, this procedure is used to infer information from an experimentally obtained spectrum. Furthermore, the programs and data files are provided for LIBS investigations that also reveal AlO, C{sub 2}, CN, and TiO diatomic spectra. - Highlights: • We present a program for fitting of molecular spectra. • This includes data base for AlO, C{sub 2}, CN, and TiO. • We discuss the details of the program including fitting. • We show computed examples and reference current work.

9 Records of Diatoms and Physicochemical.cdr

African Journals Online (AJOL)

Administrator

between some physicochemical parameters and diatom species in these ponds. ..... Diversity and relative abundance (%) of diatoms species in selected seasonal ponds in Zaria, Nigeria ..... connection with reference conditions of the water.

Blooming Artifact Reduction in Coronary Artery Calcification by A New De-blooming Algorithm: Initial Study.

Science.gov (United States)

Li, Ping; Xu, Lei; Yang, Lin; Wang, Rui; Hsieh, Jiang; Sun, Zhonghua; Fan, Zhanming; Leipsic, Jonathon A

2018-05-02

The aim of this study was to investigate the use of de-blooming algorithm in coronary CT angiography (CCTA) for optimal evaluation of calcified plaques. Calcified plaques were simulated on a coronary vessel phantom and a cardiac motion phantom. Two convolution kernels, standard (STND) and high-definition standard (HD STND), were used for imaging reconstruction. A dedicated de-blooming algorithm was used for imaging processing. We found a smaller bias towards measurement of stenosis using the de-blooming algorithm (STND: bias 24.6% vs 15.0%, range 10.2% to 39.0% vs 4.0% to 25.9%; HD STND: bias 17.9% vs 11.0%, range 8.9% to 30.6% vs 0.5% to 21.5%). With use of de-blooming algorithm, specificity for diagnosing significant stenosis increased from 45.8% to 75.0% (STND), from 62.5% to 83.3% (HD STND); while positive predictive value (PPV) increased from 69.8% to 83.3% (STND), from 76.9% to 88.2% (HD STND). In the patient group, reduction in calcification volume was 48.1 ± 10.3%, reduction in coronary diameter stenosis over calcified plaque was 52.4 ± 24.2%. Our results suggest that the novel de-blooming algorithm could effectively decrease the blooming artifacts caused by coronary calcified plaques, and consequently improve diagnostic accuracy of CCTA in assessing coronary stenosis.

Biofilm and capsule formation of the diatom Achnanthidium minutissimum are affected by a bacterium.

Science.gov (United States)

Windler, Miriam; Leinweber, Katrin; Bartulos, Carolina Rio; Philipp, Bodo; Kroth, Peter G

2015-04-01

Photoautotrophic biofilms play an important role in various aquatic habitats and are composed of prokaryotic and/or eukaryotic organisms embedded in extracellular polymeric substances (EPS). We have isolated diatoms as well as bacteria from freshwater biofilms to study organismal interactions between representative isolates. We found that bacteria have a strong impact on the biofilm formation of the pennate diatom Achnanthidium minutissimum. This alga produces extracellular capsules of insoluble EPS, mostly carbohydrates (CHO), only in the presence of bacteria (xenic culture). The EPS themselves also have a strong impact on the aggregation and attachment of the algae. In the absence of bacteria (axenic culture), A. minutissimum did not form capsules and the cells grew completely suspended. Fractionation and quantification of CHO revealed that the diatom in axenic culture produces large amounts of soluble CHO, whereas in the xenic culture mainly insoluble CHO were detected. For investigation of biofilm formation by A. minutissimum, a bioassay was established using a diatom satellite Bacteroidetes bacterium that had been shown to induce capsule formation of A. minutissimum. Interestingly, capsule and biofilm induction can be achieved by addition of bacterial spent medium, indicating that soluble hydrophobic molecules produced by the bacterium may mediate the diatom/bacteria interaction. With the designed bioassay, a reliable tool is now available to study the chemical interactions between diatoms and bacteria with consequences for biofilm formation. © 2015 Phycological Society of America.

Isolation and partial chemical analysis of exopolysaccharides from cultivated marine diatom Coscinodiscus wailesii (Coscinodiscales, Bacillariophyta); Isolamento e analise quimica parcial de exopolissacarideos da diatomacea marinha cultivada Coscinodiscus wailesii (Coscinodiscales, Bacillariophyta)

Energy Technology Data Exchange (ETDEWEB)

Marson-Ascencio, Poliana G.; Ascencio, Sergio Donizeti [Universidade Federal do Tocantins, Palmas, TO (Brazil); Baggio, Selma Faria Zawadzki, E-mail: polianamarson@uft.edu.br [Universidade Federal do Parana, Curitiba, PR (Brazil). Centro Politecnico. Dept. de Bioquimica e Biologia Molecular

2012-07-01

The marine diatom Coscinodiscus wailesii has attracted ecological interest because their blooms affect fishing areas. The aim of this work was the isolation, extraction and partial chemical characterization of soluble exopolysaccharide and bound exopolysaccharide from C. wailesii. Cultures were grown in Guillards f/2 medium under controlled conditions of temperature, aeration, photo period and light intensity. Percentage of carbohydrate, uronic acids, sulfates groups and cellular lipids was determined. Ion exchange chromatography of exopolysaccharides produced three fractions whose partial chemical structures were disclosed using {sup 13}C NMR and methylation techniques. (author)

A novel earth observation based ecological indicator for cyanobacterial blooms

Science.gov (United States)

Anttila, Saku; Fleming-Lehtinen, Vivi; Attila, Jenni; Junttila, Sofia; Alasalmi, Hanna; Hällfors, Heidi; Kervinen, Mikko; Koponen, Sampsa

2018-02-01

Cyanobacteria form spectacular mass occurrences almost annually in the Baltic Sea. These harmful algal blooms are the most visible consequences of marine eutrophication, driven by a surplus of nutrients from anthropogenic sources and internal processes of the ecosystem. We present a novel Cyanobacterial Bloom Indicator (CyaBI) targeted for the ecosystem assessment of eutrophication in marine areas. The method measures the current cyanobacterial bloom situation (an average condition of recent 5 years) and compares this to the estimated target level for 'good environmental status' (GES). The current status is derived with an index combining indicative bloom event variables. As such we used seasonal information from the duration, volume and severity of algal blooms derived from earth observation (EO) data. The target level for GES was set by using a remote sensing based data set named Fraction with Cyanobacterial Accumulations (FCA; Kahru & Elmgren, 2014) covering years 1979-2014. Here a shift-detection algorithm for time series was applied to detect time-periods in the FCA data where the level of blooms remained low several consecutive years. The average conditions from these time periods were transformed into respective CyaBI target values to represent target level for GES. The indicator is shown to pass the three critical factors set for marine indicator development, namely it measures the current status accurately, the target setting can be scientifically proven and it can be connected to the ecosystem management goal. An advantage of the CyaBI method is that it's not restricted to the data used in the development work, but can be complemented, or fully applied, by using different types of data sources providing information on cyanobacterial accumulations.

The highly heterogeneous methylated genomes and diverse restriction-modification systems of bloom-forming Microcystis.

Science.gov (United States)

Zhao, Liang; Song, Yulong; Li, Lin; Gan, Nanqin; Brand, Jerry J; Song, Lirong

2018-05-01

The occurrence of harmful Microcystis blooms is increasing in frequency in a myriad of freshwater ecosystems. Despite considerable research pertaining to the cause and nature of these blooms, the molecular mechanisms behind the cosmopolitan distribution and phenotypic diversity in Microcystis are still unclear. We compared the patterns and extent of DNA methylation in three strains of Microcystis, PCC 7806SL, NIES-2549 and FACHB-1757, using Single Molecule Real-Time (SMRT) sequencing technology. Intact restriction-modification (R-M) systems were identified from the genomes of these strains, and from two previously sequenced strains of Microcystis, NIES-843 and TAIHU98. A large number of methylation motifs and R-M genes were identified in these strains, which differ substantially among different strains. Of the 35 motifs identified, eighteen had not previously been reported. Strain NIES-843 contains a larger number of total putative methyltransferase genes than have been reported previously from any bacterial genome. Genomic comparisons reveal that methyltransferases (some partial) may have been acquired from the environment through horizontal gene transfer. Copyright © 2018 Elsevier B.V. All rights reserved.

Strategies of marine dinoflagellate survival and some rules of assembly

Science.gov (United States)

Smayda, Theodore J.; Reynolds, Colin S.

2003-03-01

Dinoflagellate ecology is based on multiple adaptive strategies and species having diverse habitat preferences. Nine types of mixing-irradiance-nutrient habitats selecting for specific marine dinoflagellate life-form types are recognised, with five rules of assembly proposed to govern bloom-species selection and community organisation within these habitats. Assembly is moulded around an abiotic template of light energy, nutrient supply and physical mixing in permutative combinations. Species selected will have one of three basic ( C-, S-, R-) strategies: colonist species ( C-) which predominate in chemically disturbed habitats; nutrient stress tolerant species ( S-), and species ( R-) tolerant of shear/stress forces in physically disturbed water masses. This organisational plan of three major habitat variables and three major adaptive strategies is termed the 3-3 plan. The bloom behaviour and habitat specialisation of dinoflagellates and diatoms are compared. Dinoflagellates behave as annual species, bloom soloists, are ecophysiologically diverse, and habitat specialists whose blooms tend to be monospecific. Diatoms behave as perennial species, guild members, are habitat cosmopolites, have a relatively uniform bloom strategy based on species-rich pools and exhibit limited habitat specialisation. Dinoflagellate bloom-species selection follows a taxonomic hierarchical pathway which progresses from phylogenetic to generic to species selection, and in that sequence. Each hierarchical taxonomic level has its own adaptive requirements subject to rules of assembly. Dinoflagellates would appear to be well suited to exploit marine habitats and to be competitive with other phylogenetic groups, yet fail to do so.

The effect of antibiotics on diatom communities

Digital Repository Service at National Institute of Oceanography (India)

DeCosta, P.M.; Anil, A.C.

Effect of antibiotics (penicillin (P), streptomycin (S) and chloramphenicol (C)) on benthic diatom communities was evaluated using a modified extinction–dilution method. The high antibiotic combinations (2PSC and PSC) reduced diatoms by 99...

Comparing Ecological and Genetic Diversity Within the Marine Diatom Genus Pseudo-nitzschia: A Multiregional Synthesis

Science.gov (United States)

Hubbard, K.; Bruzek, S.

2016-02-01

The globally distributed marine diatom genus Pseudo-nitzschia consists of approximately 40 species, more than half of which occur in US coastal waters. Here, sensitive genetic tools targeting a variable portion of the internal transcribed spacer 1 (ITS1) region of the rRNA gene were used to assess Pseudo-nitzschia spp. diversity in more than 600 environmental DNA samples collected from US Atlantic, Pacific, and Gulf of Mexico waters. Community-based approaches employed genus-specific primers for environmental DNA fingerprinting and targeted sequencing. For the Gulf of Mexico samples especially, a nested PCR approach (with or without degenerate primers) improved resolution of species diversity. To date, more than 40 unique ITS1 amplicon sizes have been repeatedly observed in ITS1 fingerprints. Targeted sequencing of environmental DNA as well as single chains isolated from live samples indicate that many of these represent novel and known inter- and intra-specific Pseudo-nitzschia diversity. A few species (e.g., P. pungens, P. cuspidata) occur across all three regions, whereas other species and intraspecific variants occurred at local to regional spatial scales only. Generally, species frequently co-occur in complex assemblages, and transitions in Pseudo-nitzschia community composition occur seasonally, prior to bloom initiation, and across (cross-shelf, latitudinal, and vertical) environmental gradients. These observations highlight the dynamic nature of diatom community composition in the marine environment and the importance of classifying diversity at relevant ecological and/or taxonomic scales.

Remote Sensing Marine Ecology: Wind-driven algal blooms in the open oceans and their ecological impacts

Science.gov (United States)

Tang, DanLing

2016-07-01

Algal bloom not only can increase the primary production but also could result in negative ecological consequence, e.g., Harmful Algal Blooms (HABs). According to the classic theory for the formation of algal blooms "critical depth" and "eutrophication", oligotrophic sea area is usually difficult to form a large area of algal blooms, and actually the traditional observation is only sporadic capture to the existence of algal blooms. Taking full advantage of multiple data of satellite remote sensing, this study: 1), introduces "Wind-driven algal blooms in open oceans: observation and mechanisms" It explained except classic coastal Ekman transport, the wind through a variety of mechanisms affecting the formation of algal blooms. Proposed a conceptual model of "Strong wind -upwelling-nutrient-phytoplankton blooms" in Western South China Sea (SCS) to assess role of wind-induced advection transport in phytoplankton bloom formation. It illustrates the nutrient resources that support long-term offshore phytoplankton blooms in the western SCS; 2), Proposal of the theory that "typhoons cause vertical mixing, induce phytoplankton blooms", and quantify their important contribution to marine primary production; Proposal a new ecological index for typhoon. Proposed remote sensing inversion models. 3), Finding of the spatial and temporaldistributions pattern of harmful algal bloom (HAB)and species variations of HAB in the South Yellow Sea and East China Sea, and in the Pearl River estuary, and their oceanic dynamic mechanisms related with monsoon; The project developed new techniques and generated new knowledge, which significantly improved understanding of the formation mechanisms of algal blooms. 1), It proposed "wind-pump" mechanism integrates theoretical system combing "ocean dynamics, development of algal blooms, and impact on primary production", which will benefit fisheries management. 2), A new interdisciplinary subject "Remote Sensing Marine Ecology"(RSME) has been

Fabrication of insulator nanocapillaries from diatoms

International Nuclear Information System (INIS)

Bereczky, R.J.; Tokesi, K.

2006-01-01

Complete text of publication follows. Diatoms are unicellular microscopic organisms with silicon-dioxide based skeleton enveloped with an organic material, which composes essentially polysaccharides and proteins (see Fig. 1a.). As it was shown, the valva of the diatoms build up almost from clean silicondioxide [1]. Therefore, removing the organic compounds from the diatom, we can have in our hand an ideal, about 100 μ m-sized, and almost cylindrical shaped insulating nanostructure. There are various techniques available to disembarrass the diatom from its organic compounds. We used the so called hydrogen peroxide method. The advantageous properties of this method are the followings: a) this is one of the fastest procedures among the possible methods, b) do not require special equipment, c) cheap, and last but not least it is less harmful for health compared to other methods. This procedure can be an alternative way of the fabrication of insulator nanocapillaries. In this case the preparation of the nanocapillaries is simple and quick. Moreover, we do not need to invest expensive special techniques, (like micromachining-, electrochemical etching technique, moulding process etc) as it was necessary for the case of previously developed method producing insulator nanocapillaries [2,3]. Fig. 1b and Fig. 1c. show the scanning electron micrograph of the skeleton of the diatoms. The size of the cylindrical holes are roughly 200 nm (see Fig. 1c). (author)

Current trends to comprehend lipid metabolism in diatoms.

Science.gov (United States)

Zulu, Nodumo Nokulunga; Zienkiewicz, Krzysztof; Vollheyde, Katharina; Feussner, Ivo

2018-04-01

Diatoms are the most dominant phytoplankton species in oceans and they continue to receive a great deal of attention because of their significant contributions in ecosystems and the environment. Due to triacylglycerol (TAG) profiles that are abundant in medium-chain fatty acids, diatoms have emerged to be better feed stocks for biofuel production, in comparison to the commonly studied green microalgal species (chlorophytes). Importantly, diatoms are also known for their high levels of the essential ω3 fatty acids, eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) and are considered to be a promising alternative source of these components. The two most commonly exploited diatoms include Thalassiosira pseudonana and Phaeodactylum tricornutum. Although obvious similarities between diatoms and chlorophytes exist, there are some substantial differences in their lipid metabolism. This review provides an overview on lipid metabolism in diatoms, with P. tricornutum as the most explored model. Special emphasis is placed on the synthesis and incorporation of very long chain ω3 fatty acids into lipids. Furthermore, current approaches including genetic engineering and biotechnological methods aimed at improving and maximizing lipid production in P. tricornutum are also discussed. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

Biofouling in capillary and spiral wound membranes facilitated by marine algal bloom

DEFF Research Database (Denmark)

Villacorte, L.O.; Ekowati, Y.; Calix-Ponce, H.N.

2017-01-01

blooms. The tendency of AOM from bloom-forming marine algae to adhere to membranes and its ability to enhance biofilm growth were measured using atomic force microscopy, flow cytometry, liquid chromatography and accelerated membrane biofouling experiments. Adhesion force measurements indicate that AOM......Algal-derived organic matter (AOM), particularly transparent exopolymer particles, has been suspected to facilitate biofilm development in membrane systems (e.g., seawater reverse osmosis). This study demonstrates the possible role of AOM on biofouling in membrane systems affected by marine algal...... biodegradable nutrients. The abovementioned findings indicate that AOM facilitates the onset of membrane biofouling primarily as a conditioning platform and to some extent as a nutrient source for biofilm-forming bacteria....

Diuron causes sinking retardation and physiochemical alteration in marine diatoms Thalassiosira pseudonana and Skeletonema marinoi-dohrnii complex.

Science.gov (United States)

Khanam, Mst Ruhina Margia; Shimasaki, Yohei; Hosain, Md Zahangir; Mukai, Koki; Tsuyama, Michito; Qiu, Xuchun; Tasmin, Rumana; Goto, Hiroshi; Oshima, Yuji

2017-05-01

The present research investigated the effect of diuron on sinking rate and the physiochemical changes in two marine diatoms, Thalassiosira pseudonana (single-celled species) and Skeletonema marinoi-dohrnii complex (chain-forming species). The results revealed that the sinking rate of both diatoms exposed to diuron at a level of 50% effective concentration for growth (EC50) decreased significantly compared with the control. Photosynthetic performance (Fv/Fm and PI ABS ) of both diatoms also decreased significantly with diuron exposure. The number of cells per chain in S. marinoi-dohrnii decreased significantly with diuron treatment, but T. pseudonana cell diameter remained stable. Neutral lipid concentration per cell was significantly higher compared with control at 72 h in both diatom species exposed to EC50 level diuron. And water-soluble protein concentration per cell at 72 h was lower than control in the T. pseudonana EC50 group only. These biochemical changes may decrease specific gravity of cells and seems to cause a decreased sinking rate in diatoms. The positive significant correlation between the numbers of cells per chain and sinking rate in S. marinoi-dohrnii indicated that chain length is also an important factor in sinking rate regulation for chain-forming diatoms. Thus, our present study suggested that suppression of photosynthetic performance and the resultant physiochemical changes induced the decreased sinking rate that may inhibit the normal survival strategy (avoidance from the surface layer where strong light either causes photo-inhibition or interrupts resting cell formation). Therefore, the use of antifouling agents should be considered for the sustainable marine environment. Copyright © 2017 Elsevier Ltd. All rights reserved.

Peculiarities of the Woody Plants Re-Bloom

Directory of Open Access Journals (Sweden)

Opalko Olga Anatolievna

2015-09-01

Full Text Available The data of literary sources concerning the bloom of angiosperm plants and deviation in the development of a flower and inflorescence, in particular untimely flowering, was generalized; our observation results of some peculiarities of re-bloom of woody plants in the National Dendrological Park “Sofiyivka” of NAS of Ukraine (NDP “Sofiyivka” were discussed. The flowering process was formed during a long-term evolution of a propagation system of angiosperm plants as a basis of fertilization and further fruit and seed development. As a result of vernalization and photoperiodism reactions, flowering (under regular conditions occurs in the most favorable period for pollination and fertilization of every plant. However, various deviations, in particular, the untimely (most frequently double, sometimes three- and four-fold flowering occurs in this perfect process of generative organ formation of angiosperm plants. An increased number of reports about re-bloom (at the end of summer – at the beginning of fall of the representatives of various woody plant species whose flowers usually blossom in May-June prompts the analysis of the available information concerning the mechanisms of flowering and the causes which lead to deviation of flowering processes. Flowering of the woody plant representatives of the collection fund of the NDP “Sofiyivka” was studied; statistics about re-bloom in different cities of Ukraine were monitored. The classification of re-bloom facts was carried out according to V.L. Vitkovskiy (1984. Although this classification has mostly a stated nature, it was good enough when being formulated and, with certain conditions, it can be applied nowadays. Accordingly, using this classification, abnormal cases can include facts of early summer-fall flowering and early winter flowering. A late spring flowering can be adaptive response of damaged plants to exogenous stresses, due to which the probability of sexual propagation remains

Electron transport through a diatomic molecule

International Nuclear Information System (INIS)

Imran, Muhammad

2014-01-01

Electron transport through a diatomic molecular tunnel junction shows wave like interference phenomenon. By using Keldysh non-equilibrium Green's function (NEGF) theory, we have explicitly presented current and differential conductance calculation for a diatomic molecular and two isolated atoms (two atoms having zero hybridization between their energy orbitals) tunnel junctions. In case of a diatomic molecular tunnel junction, Green's function propagators entering into current and differential conductance formula interfere constructively for a molecular anti-bonding state and destructively for bonding state. Consequently, conductance through a molecular bonding state is suppressed, and to conserve current, conductance through anti-bonding state is enhanced. Therefore, current steps and differential conductance peaks amplitude show asymmetric correspondence between molecular bonding and anti-bonding states. Interestingly, for a diatomic molecule, comprising of two atoms of same energy level, these propagators interfere completely destructively for molecular bonding state and constructively for molecular anti-bonding state. Hence under such condition, a single step or a single peak is shown up in current versus voltage or differential conductance versus voltage studies.

Applications of Diatoms as Potential Microalgae in Nanobiotechnology

OpenAIRE

Ahmad Yari Khosroushahi; Miguel de la Guardia; Mohamad Moradi Ghorakhlu; Ali Akbar Jamali; Fariba Akbari

2012-01-01

Introduction: Diatoms are single cell eukaryotic microalgae, which present in nearly every water habitat make them ideal tools for a wide range of applications such as oil explora­tion, forensic examination, environmental indication, biosilica pattern generation, toxicity testing and eutrophication of aqueous ecosystems. Methods: Essential information on diatoms were reviewed and discussed towards impacts of diatoms on biosynthesis and bioremediation. Results: In this review, we present the ...

Variation of particulate organic carbon and its relationship with bio-optical properties during a phytoplankton bloom in the Pearl River estuary

International Nuclear Information System (INIS)

Wang Guifen; Zhou Wen; Cao Wenxi; Yin Jianping; Yang Yuezhong; Sun Zhaohua; Zhang Yuanzhi; Zhao Jun

2011-01-01

Highlights: → A study about relationship between POC and optical properties during a phytoplankton bloom. → Empirical algorithms for retrieving POC concentration from optical data were developed. → Phytoplankton carbon and it's ratio to Chl-a are estimated and discussed. → Demonstrates that marine optical buoy can be a new platform for monitoring biogeochemical cycle. - Abstract: In this study, variations in the particulate organic carbon (POC) were monitored during a phytoplankton bloom event, and the corresponding changes in bio-optical properties were tracked at one station (114.29 o E, 22.06 o N) located in the Pearl River estuary. A greater than 10-fold increase in POC (112.29-1173.36 mg m -3 ) was observed during the bloom, with the chlorophyll a concentration (Chl-a) varying from 0.984 to 25.941 mg m -3 . A power law function is used to describe the relationship between POC and Chl-a, and the POC:Chl-a ratio tends to change inversely with Chl-a. Phytoplankton carbon concentration is indirectly estimated using the conceptual model proposed by , and this carbon is found to contribute 47.21% (±10.65%) to total POC. The estimated carbon-to-chlorophyll ratio of phytoplankton in diatom-dominated waters is found to be comparable with results reported in the literature. Empirical algorithms for determining the concentrations of Chl-a and POC were developed based on the relationships of these variables with the blue-to-green reflectance ratio. With these bio-optical models, the levels of particulate organic carbon and Chl-a could be predicted from the radiometric data measured by a marine optical buoy, which showed much more detailed information about the variability in biogeochemical parameters during this bloom event.

Seasonal variations in fouling diatom communities on the Yantai coast

Science.gov (United States)

Yang, Cuiyun; Wang, Jianhua; Yu, Yang; Liu, Sujing; Xia, Chuanhai

2015-03-01

Fouling diatoms are a main component of biofilm, and play an important role in marine biofouling formation. We investigated seasonal variations in fouling diatom communities that developed on glass slides immersed in seawater, on the Yantai coast, northern Yellow Sea, China, using microscopy and molecular techniques. Studies were conducted during 2012 and 2013 over 3, 7, 14, and 21 days in each season. The abundance of attached diatoms and extracellular polymeric substances increased with exposure time of the slides to seawater. The lowest diatom density appeared in winter and the highest species richness and diversity were found in summer and autumn. Seasonal variation was observed in the structure of fouling diatom communities. Pennate diatoms Cylindrotheca, Nitzschia, Navicula, Amphora, Gomphonema, and Licmophora were the main fouling groups. Cylindrotheca sp. dominated in the spring. Under laboratory culture conditions, we found that Cylindrotheca grew very fast, which might account for the highest density of this diatom in spring. The lower densities in summer and autumn might result from the emergence of fouling animals and environmental factors. The Cylindrotheca sp. was identified as Cylindrotheca closterium using18S rDNA sequencing. The colonization process of fouling diatoms and significant seasonal variation in this study depended on environmental and biological factors. Understanding the basis of fouling diatoms is essential and important for developing new antifouling techniques.

Inorganic carbon availability in benthic diatom communities: photosynthesis and migration.

Science.gov (United States)

Marques da Silva, Jorge; Cruz, Sónia; Cartaxana, Paulo

2017-09-05

Diatom-dominated microphytobenthos (MPB) is the main primary producer of many intertidal and shallow subtidal environments, being therefore of critical importance to estuarine and coastal food webs. Owing to tidal cycles, intertidal MPB diatoms are subjected to environmental conditions far more variable than the ones experienced by pelagic diatoms (e.g. light, temperature, salinity, desiccation and nutrient availability). Nevertheless, benthic diatoms evolved adaptation mechanisms to these harsh conditions, including the capacity to move within steep physical and chemical gradients, allowing them to perform photosynthesis efficiently. In this contribution, we will review present knowledge on the effects of dissolved inorganic carbon (DIC) availability on photosynthesis and productivity of diatom-dominated MPB. We present evidence of carbon limitation of photosynthesis in benthic diatom mats and highly productive MPB natural communities. Furthermore, we hypothesize that active vertical migration of epipelic motile diatoms could overcome local depletion of DIC in the photic layer, providing the cells alternately with light and inorganic carbon supply. The few available longer-term experiments on the effects of inorganic carbon enrichment on the productivity of diatom-dominated MPB have yielded inconsistent results. Therefore, further studies are needed to properly assess the response of MPB communities to increased CO 2 and ocean acidification related to climate change.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

Trichodesmium blooms and warm-core ocean surface features in the Arabian Sea and the Bay of Bengal.

Science.gov (United States)

Jyothibabu, R; Karnan, C; Jagadeesan, L; Arunpandi, N; Pandiarajan, R S; Muraleedharan, K R; Balachandran, K K

2017-08-15

Trichodesmium is a bloom-forming, diazotrophic, non-heterocystous cyanobacteria widely distributed in the warmer oceans, and their bloom is considered a 'biological indication' of stratification and nitrogen limitation in the ocean surface layer. In the first part of this paper, based on the retrospective analyses of the ocean surface mesoscale features associated with 59 Trichodesmium bloom incidences recorded in the past, 32 from the Arabian Sea and the Bay of Bengal, and 27 from the rest of the world, we have showed that warm-core features have an inducing effect on bloom formation. In the second part, we have considered the environmental preferences of Trichodesmium bloom based on laboratory and field studies across the globe, and proposed a view about how warm-core features could provide an inducing pre-requisite condition for the bloom formation in the Arabian Sea and the Bay of Bengal. Proposed that the subsurface waters of warm-core features maintain more likely chances for the conducive nutrient and light conditions required for the triggering of the blooms. Copyright © 2017 Elsevier Ltd. All rights reserved.

Relationship of the Williams-Poulios and Manning-Rosen Potential Energy Models for Diatomic Molecules

Science.gov (United States)

Jia, Chun-Sheng; Liang, Guang-Chuan; Peng, Xiao-Long; Tang, Hong-Ming; Zhang, Lie-Hui

2014-06-01

By employing the dissociation energy and the equilibrium bond length for a diatomic molecule as explicit parameters, we generate an improved form of the Williams-Poulios potential energy model. It is found that the negative Williams-Poulios potential model is equivalent to the Manning-Rosen potential model for diatomic molecules. We observe that the Manning-Rosen potential is superior to the Morse potential in reproducing the interaction potential energy curves for the {{a}3 Σu+} state of the 6Li2 molecule and the {{X}1 sum+} state of the SiF+ molecule.

Linking the planktonic and benthic habitat: genetic structure of the marine diatom Skeletonema marinoi.

Science.gov (United States)

Godhe, Anna; Härnström, Karolina

2010-10-01

Dormant life stages are important strategies for many aquatic organisms. The formation of resting stages will provide a refuge from unfavourable conditions in the water column, and their successive accumulation in the benthos will constitute a genetic reservoir for future planktonic populations. We have determined the genetic structure of a common bloom-forming diatom, Skeletonema marinoi, in the sediment and the plankton during spring, summer and autumn two subsequent years (2007-2009) in Gullmar Fjord on the Swedish west coast. Eight polymorphic microsatellite loci were used to assess the level of genetic differentiation and the respective gene diversity of the two different habitats. We also determined the degree of genetic differentiation between the seed banks inside the fjord and the open sea. The results indicate that Gullmar Fjord has one dominant endogenous population of S. marinoi, which is genetically differentiated from the open sea population. The fjord population is encountered in the plankton and in the sediment. Shifts from the dominant population can happen, and in our study, two genetically differentiated plankton populations, displaying reduced genetic diversity, occurred in September 2007 and 2008. Based on our results, we suggest that sill fjords maintain local long-lived and well-adapted protist populations, which continuously shift between the planktonic and benthic habitats. Intermittently, short-lived and mainly asexually reproducing populations can replace the dominant population in the water column, without influencing the genetic structure of the benthic seed bank. © 2010 Blackwell Publishing Ltd.

Is reduced benthic flux related to the Diporeia decline? Analysis of spring blooms and whiting events in Lake Ontario

Science.gov (United States)

Watkins, James M.; Rudstam, Lars G.; Crabtree, Darran L.; Walsh, Maureen

2013-01-01

Benthic monitoring by USGS off the southern shore of Lake Ontario from October 1993 to October 1995 provides a detailed view of the early stages of the decline of the native amphipod Diporeia. A loss of the 1994 and 1995 year classes of Diporeia preceded the disappearance of the native amphipod at sites near Oswego and Rochester at depths from 55 to 130 m. In succeeding years, Diporeia populations continued to decline in Lake Ontario and were nearly extirpated by 2008. Explanations for Diporeia 's decline in the Great Lakes include several hypotheses often linked to the introduction and expansion of exotic zebra and quagga mussels (Dreissena sp.). We compare the timeline of the Diporeia decline in Lake Ontario with trends in two sources of organic matter to the sediments — spring diatom blooms and late summer whiting events. The 1994–95 decline of Diporeia coincided with localized dreissenid effects on phytoplankton in the nearshore and a year (April 1994 to May 1995) of decreased flux of organic carbon recorded by sediment traps moored offshore of Oswego. Later declines of profundal (> 90 m) Diporeia populations in 2003 were poorly associated with trends in spring algal blooms and late summer whiting events. Lake Ontario/Diporeia/Dreissena/remote sensing.

Microcystin in cyanobacterial blooms in a Chilean lake.

Science.gov (United States)

Campos, V; Cantarero, S; Urrutia, H; Heinze, R; Wirsing, B; Neumann, U; Weckesser, J

1999-05-01

Cyanobacterial blooms dominated by Microcystis sp. occurred in lake Rocuant ("marisma", near Concepción/Chile) in February 1995 and 1996. In the bloom samples collected in both years the hepatotoxin microcystin was detected by RP-HPLC in both samples and in the sample of 1995 also by a toxicity assay using primary rat hepatocytes. In the bloom of 1995, the microcystin content of the dry bloom biomass was determined to be 130 micrograms/g on the basis of the RP-HPLC peak area and 800 micrograms/g on the basis of the rat hepatotoxicity assay, respectively. In the bloom of 1996, RP-HPLC analysis revealed a microcystin content of 8.13 micrograms/g bloom material dry weight. In this year no hepatotoxicity was measured using a concentration range up to 0.8 mg (d. w.) of bloom material per ml in the rat hepatotoxicity assay. This is the first report on the detection of microcystins in Chilean water bodies.

Radiation damage in diatomic materials at high doses

International Nuclear Information System (INIS)

Hobbs, L.W.; Hughes, A.E.

1975-10-01

Radiation effects in diatomic materials can differ structurally from those in metals because of the need to take into account different displacement rates on the two sublattices and the inevitable stoichiometric implications; in most diatomic insulators the anion species has the greater displacement cross section. Anion point defect stabilisation in heavily-irradiated (0.1 to 10 dpa) diatomic insulators has been studied using radiolysis of alkali and alkaline earth halides. A temperatures > 0.3 Tsub(m), all anion defects are mobile and can aggregate. Aggregation of anion interstitials results in creation of perfect dislocation loops without the need for primary cation displacements; simultaneous formation of substitutional anion molecular centres provides the necessary cation interstitials. Aggregation of anion vacancies leads to formation of metallic inclusions of the cation species, in some cases in an ordered array, which is the analogue, on a single sublattice, to the void lattice in metals. Availability of sinks for both anion interstitials and anion vacancies yields defect growth kinetics similar to those observed during formation of voids in irradiated metals, and a very high level of damage (approximately 10%) can be sustained in the lattice. The width of the temperature region concerned is much narrower, however, due to the possibility of recombination of aggregated or re-emitted anion vacancies with mobile or dispersed anion molecular defects; the latter can also aggregate to form fluid anion molecular inclusions and so complete the decomposition of the solid into separate phases of its constituent elements. (author)

A caveat regarding diatom-inferred nitrogen concentrations in oligotrophic lakes

Science.gov (United States)

Arnett, Heather A.; Saros, Jasmine E.; Mast, M. Alisa

2012-01-01

Atmospheric deposition of reactive nitrogen (Nr) has enriched oligotrophic lakes with nitrogen (N) in many regions of the world and elicited dramatic changes in diatom community structure. The lakewater concentrations of nitrate that cause these community changes remain unclear, raising interest in the development of diatom-based transfer functions to infer nitrate. We developed a diatom calibration set using surface sediment samples from 46 high-elevation lakes across the Rocky Mountains of the western US, a region spanning an N deposition gradient from very low to moderate levels (phosphorus, and hypolimnetic water temperature were related to diatom distributions. A transfer function was developed for nitrate and applied to a sedimentary diatom profile from Heart Lake in the central Rockies. The model coefficient of determination (bootstrapping validation) of 0.61 suggested potential for diatom-inferred reconstructions of lakewater nitrate concentrations over time, but a comparison of observed versus diatom-inferred nitrate values revealed the poor performance of this model at low nitrate concentrations. Resource physiology experiments revealed that nitrogen requirements of two key taxa were opposite to nitrate optima defined in the transfer function. Our data set reveals two underlying ecological constraints that impede the development of nitrate transfer functions in oligotrophic lakes: (1) even in lakes with nitrate concentrations below quantification (<1 μg L−1), diatom assemblages were already dominated by species indicative of moderate N enrichment; (2) N-limited oligotrophic lakes switch to P limitation after receiving only modest inputs of reactive N, shifting the controls on diatom species changes along the length of the nitrate gradient. These constraints suggest that quantitative inferences of nitrate from diatom assemblages will likely require experimental approaches.

Photosynthetic Pigments in Diatoms.

Science.gov (United States)

Kuczynska, Paulina; Jemiola-Rzeminska, Malgorzata; Strzalka, Kazimierz

2015-09-16

Photosynthetic pigments are bioactive compounds of great importance for the food, cosmetic, and pharmaceutical industries. They are not only responsible for capturing solar energy to carry out photosynthesis, but also play a role in photoprotective processes and display antioxidant activity, all of which contribute to effective biomass and oxygen production. Diatoms are organisms of a distinct pigment composition, substantially different from that present in plants. Apart from light-harvesting pigments such as chlorophyll a, chlorophyll c, and fucoxanthin, there is a group of photoprotective carotenoids which includes β-carotene and the xanthophylls, diatoxanthin, diadinoxanthin, violaxanthin, antheraxanthin, and zeaxanthin, which are engaged in the xanthophyll cycle. Additionally, some intermediate products of biosynthetic pathways have been identified in diatoms as well as unusual pigments, e.g., marennine. Marine algae have become widely recognized as a source of unique bioactive compounds for potential industrial, pharmaceutical, and medical applications. In this review, we summarize current knowledge on diatom photosynthetic pigments complemented by some new insights regarding their physico-chemical properties, biological role, and biosynthetic pathways, as well as the regulation of pigment level in the cell, methods of purification, and significance in industries.

Photosynthetic Pigments in Diatoms

Directory of Open Access Journals (Sweden)

Paulina Kuczynska

2015-09-01

Full Text Available Photosynthetic pigments are bioactive compounds of great importance for the food, cosmetic, and pharmaceutical industries. They are not only responsible for capturing solar energy to carry out photosynthesis, but also play a role in photoprotective processes and display antioxidant activity, all of which contribute to effective biomass and oxygen production. Diatoms are organisms of a distinct pigment composition, substantially different from that present in plants. Apart from light-harvesting pigments such as chlorophyll a, chlorophyll c, and fucoxanthin, there is a group of photoprotective carotenoids which includes β-carotene and the xanthophylls, diatoxanthin, diadinoxanthin, violaxanthin, antheraxanthin, and zeaxanthin, which are engaged in the xanthophyll cycle. Additionally, some intermediate products of biosynthetic pathways have been identified in diatoms as well as unusual pigments, e.g., marennine. Marine algae have become widely recognized as a source of unique bioactive compounds for potential industrial, pharmaceutical, and medical applications. In this review, we summarize current knowledge on diatom photosynthetic pigments complemented by some new insights regarding their physico-chemical properties, biological role, and biosynthetic pathways, as well as the regulation of pigment level in the cell, methods of purification, and significance in industries.

Epibiotic Diatoms Are Universally Present on All Sea Turtle Species

Science.gov (United States)

Majewska, Roksana; Lazo-Wasem, Eric A.; Nel, Ronel; Paladino, Frank V.; Rojas, Lourdes; Zardus, John D.; Pinou, Theodora

2016-01-01

The macro-epibiotic communities of sea turtles have been subject to growing interest in recent years, yet their micro-epibiotic counterparts are almost entirely unknown. Here, we provide the first evidence that diatoms are epibionts for all seven extant species of sea turtle. Using Scanning Electron Microscopy, we inspected superficial carapace or skin samples from a single representative of each turtle species. We distinguished 18 diatom taxa from these seven individuals, with each sea turtle species hosting at least two diatom taxa. We recommend that future research is undertaken to confirm whether diatom communities vary between sea turtle species and whether these diatom taxa are facultative or obligate commensals. PMID:27257972

Morphological switch to a resistant subpopulation in response to viral infection in the bloom-forming coccolithophore Emiliania huxleyi.

Science.gov (United States)

Frada, Miguel José; Rosenwasser, Shilo; Ben-Dor, Shifra; Shemi, Adva; Sabanay, Helena; Vardi, Assaf

2017-12-01

Recognizing the life cycle of an organism is key to understanding its biology and ecological impact. Emiliania huxleyi is a cosmopolitan marine microalga, which displays a poorly understood biphasic sexual life cycle comprised of a calcified diploid phase and a morphologically distinct biflagellate haploid phase. Diploid cells (2N) form large-scale blooms in the oceans, which are routinely terminated by specific lytic viruses (EhV). In contrast, haploid cells (1N) are resistant to EhV. Further evidence indicates that 1N cells may be produced during viral infection. A shift in morphology, driven by meiosis, could therefore constitute a mechanism for E. huxleyi cells to escape from EhV during blooms. This process has been metaphorically coined the 'Cheshire Cat' (CC) strategy. We tested this model in two E. huxleyi strains using a detailed assessment of morphological and ploidy-level variations as well as expression of gene markers for meiosis and the flagellate phenotype. We showed that following the CC model, production of resistant cells was triggered during infection. This led to the rise of a new subpopulation of cells in the two strains that morphologically resembled haploid cells and were resistant to EhV. However, ploidy-level analyses indicated that the new resistant cells were diploid or aneuploid. Thus, the CC strategy in E. huxleyi appears to be a life-phase switch mechanism involving morphological remodeling that is decoupled from meiosis. Our results highlight the adaptive significance of morphological plasticity mediating complex host-virus interactions in marine phytoplankton.

Climatic and lacustrine morphometric controls of diatom paleoproductivity in a tropical Andean lake

Science.gov (United States)

Bao, R.; Hernández, A.; Sáez, A.; Giralt, S.; Prego, R.; Pueyo, J. J.; Moreno, A.; Valero-Garcés, B. L.

2015-12-01

The coupling of lake dynamics with catchment biogeochemistry is considered the key element controlling primary production in mountain lakes at time scales of a few decades to millennia, yet little is known on the impacts of the morphometry of lakes throughout their ontogeny. As Lake Chungará (Central Andean Altiplano, northern Chile) experienced long-term lake-level fluctuations that strongly modified its area:volume ratio, it is an ideal system for exploring the relative roles that long-term climatic shifts and lake morphometry play on biosiliceous lacustrine productivity. In this paper, we review previous data on the percent contents of total organic carbon, total inorganic carbon, total nitrogen, total biogenic silica, isotopic composition of organic matter, carbonates, and diatom frustules, as well as data on the abundance of the chlorophycean Botryococcus braunii in this lake for the period 12,400-1300 cal yr BP. We also include new data on organic carbon and biogenic silica mass accumulation rates and the diatom assemblage composition of an offshore core dated using 14C and U/Th. Biosiliceous productivity in Lake Chungará was influenced by shifts in allochthonous nutrient inputs related to variability in precipitation. Humid phases dated at approx. 12,400 to 10,000 and 9600 to 7400 cal yr BP coincide with periods of elevated productivity, whereas decreases in productivity were recorded during arid phases dated at approx. 10,000 to 9600 and 7400 to 3550 cal yr BP (Andean mid-Holocene Aridity Period). However, morphometry-related in-lake controls led to a lack of a linear response of productivity to precipitation variability. During the late Glacial to early Holocene, lowstands facilitated complete water column mixing, prompting episodic massive blooms of a large centric diatom, Cyclostephanos cf. andinus. Thus, moderate productivity could be maintained, regardless of aridity, by this phenomenon of morphometric eutrophy during the early history of the lake

Responses of diatom communities to hydrological processes during rainfall events

Science.gov (United States)

Wu, Naicheng; Faber, Claas; Ulrich, Uta; Fohrer, Nicola

2015-04-01

The importance of diatoms as a tracer of hydrological processes has been recently recognized (Pfister et al. 2009, Pfister et al. 2011, Tauro et al. 2013). However, diatom variations in a short-term scale (e.g., sub-daily) during rainfall events have not been well documented yet. In this study, rainfall event-based diatom samples were taken at the outlet of the Kielstau catchment (50 km2), a lowland catchment in northern Germany. A total of nine rainfall events were caught from May 2013 to April 2014. Non-metric multidimensional scaling (NMDS) revealed that diatom communities of different events were well separated along NMDS axis I and II, indicating a remarkable temporal variation. By correlating water level (a proxy of discharge) and different diatom indices, close relationships were found. For example, species richness, biovolume (μm3), Shannon diversity and moisture index01 (%, classified according to van Dam et al. 1994) were positively related with water level at the beginning phase of the rainfall (i.e. increasing limb of discharge peak). However, in contrast, during the recession limb of the discharge peak, diatom indices showed distinct responses to water level declines in different rainfall events. These preliminary results indicate that diatom indices are highly related to hydrological processes. The next steps will include finding out the possible mechanisms of the above phenomena, and exploring the contributions of abiotic variables (e.g., hydrologic indices, nutrients) to diatom community patterns. Based on this and ongoing studies (Wu et al. unpublished data), we will incorporate diatom data into End Member Mixing Analysis (EMMA) and select the tracer set that is best suited for separation of different runoff components in our study catchment. Keywords: Diatoms, Rainfall event, Non-metric multidimensional scaling, Hydrological process, Indices References: Pfister L, McDonnell JJ, Wrede S, Hlúbiková D, Matgen P, Fenicia F, Ector L, Hoffmann L

Oceanographic and Biogeochemical Insights from Diatom Genomes

Science.gov (United States)

Bowler, Chris; Vardi, Assaf; Allen, Andrew E.

2010-01-01

Diatoms are the most successful group of eukaryotic phytoplankton in the modern ocean and have risen to dominance relatively quickly over the last 100 million years. Recently completed whole genome sequences from two species of diatom, Thalassiosira pseudonana and Phaeodactylum tricornutum, have revealed a wealth of information about the evolutionary origins and metabolic adaptations that have led to their ecological success. A major finding is that they have incorporated genes both from their endosymbiotic ancestors and by horizontal gene transfer from marine bacteria. This unique melting pot of genes encodes novel capacities for metabolic management, for example, allowing the integration of a urea cycle into a photosynthetic cell. In this review we show how genome-enabled approaches are being leveraged to explore major phenomena of oceanographic and biogeochemical relevance, such as nutrient assimilation and life histories in diatoms. We also discuss how diatoms may be affected by climate change-induced alterations in ocean processes.

A New Bloom: Transforming Learning

Science.gov (United States)

Cochran, David; Conklin, Jack

2007-01-01

This article discusses a new design for the classic Bloom's Taxonomy developed by Anderson, L. W. & Krathwohl, D. (2001), which can be used to evaluate learners' technology-enhanced experience in more powerful and critical ways. The New Bloom's Taxonomy incorporates contemporary research on learning and human cognition into its model. The…

Microflora in the Soft Tissue of the Pacific Oyster Crassostrea gigas Exposed to the Harmful Microalga Heterosigma akashiwo.

Science.gov (United States)

Takenaka, Shinkuro; Yoshikawa, Takeshi; Kadowaki, Shusaku; Okunishi, Suguru; Maeda, Hiroto

2017-01-01

　A marine raphidophyte Heterosigma akashiwo is a causative agent of harmful microalgal blooms, which often cause the massive mortality of aquacultured finfish. In the present study, the Pacific oyster Crassostrea gigas was reared with H. akashiwo, and effect of the microalga on filter-feeding behavior and microflora of the gastrointestinal tract was investigated. The intake of the raphidophyte cells inhibited the molluscan filter-feeding activities, suggesting the negative physiological effect of the microalgal cell contents. However, the bivalves ingested the H. akashiwo cells to the same extent as the diatom Chaetoceros calcitrans, a non-harmful indicator to estimate the filtration rate, showing a continuation of their non-selective ingestion of the phytoplankton. Microflora of the oyster soft tissue was dominated by bacteria affiliated with the family Rhodobacteraceae, some of which are associated with microalgae. In addition, the Bacteroidetes species, in which algicidal bacteria are included, were also found in the bivalve individuals exposed to H. akashiwo. These results suggested that the ingested phytoplankton affected the microbial flora in the gastrointestinal tracts, some constituents of which helped the mollusc assimilate the ingested red tide phytoplankton. This study will provide beneficial information to clarify mechanisms by which the oyster evades the ichthyotoxicity of harmful microalgae and the participation of the intestinal microorganisms in these processes.

Diatomic interaction potential theory applications

CERN Document Server

Goodisman, Jerry

2013-01-01

Diatomic Interaction Potential Theory, Volume 2: Applications discusses the variety of applicable theoretical material and approaches in the calculations for diatomic systems in their ground states. The volume covers the descriptions and illustrations of modern calculations. Chapter I discusses the calculation of the interaction potential for large and small values of the internuclear distance R (separated and united atom limits). Chapter II covers the methods used for intermediate values of R, which in principle means any values of R. The Hartree-Fock and configuration interaction schemes des

Dynamics of a cyanobacterial bloom in a hypereutrophic reservoir ...

African Journals Online (AJOL)

Blooming and non-blooming periods between 2004 and 2006 in a hypereutrophic reservoir, where cyanobacterial blooms have previously been reported to be permanent, presented an opportunity to characterise factors that may favour cyanobacterial dominance. As a bloom developed in May 2004, a shift to dominance by ...

Epibiotic Diatoms Are Universally Present on All Sea Turtle Species.

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Nathan J Robinson

Full Text Available The macro-epibiotic communities of sea turtles have been subject to growing interest in recent years, yet their micro-epibiotic counterparts are almost entirely unknown. Here, we provide the first evidence that diatoms are epibionts for all seven extant species of sea turtle. Using Scanning Electron Microscopy, we inspected superficial carapace or skin samples from a single representative of each turtle species. We distinguished 18 diatom taxa from these seven individuals, with each sea turtle species hosting at least two diatom taxa. We recommend that future research is undertaken to confirm whether diatom communities vary between sea turtle species and whether these diatom taxa are facultative or obligate commensals.

Concentrations and temporal variations of /sup 210/Po, /sup 210/Pb, and Al in the surf zone ecosystem of Copalis Beach, Washington

Energy Technology Data Exchange (ETDEWEB)

Bennett, J T; Carpenter, R

1979-01-01

Surf diatoms monitored during a 21-month period at Copalis Beach, Washington, contained elevated concentrations of Al, /sup 210/Pb, and supported /sup 210/Po compared to net phytoplankton from Washington coastal waters and Puget Sound. Aluminum concentrations of several percent dry weight found in the surf diatoms were not a reflection of contamination by discrete inorganic particulate matter but were the result of a natural coating of clay-sized particles on Chaetoceros armatum, the predominant diatom in the surfblooms. A high correlation between Al and /sup 210/Pb in the surf diatoms suggests /sup 210/Pb and supported /sup 210/Po were also associated with the clay-sized particles. During fall through spring, the unsupported /sup 210/Po concentrations in the surf diatoms were correlated with the input of /sup 210/Po by precipitation. A summer maximum in unsupported /sup 210/Po concentrations in the surf diatoms may reflect upwelling that causes higher dissolved /sup 210/Po concentrations in the summer surf relative to those of late spring and early fall. The consumers of the surf diatoms exhibited larger /sup 210/Po-activity-to-/sup 210/Pb-activity ratios than their food, indicating /sup 210/Po was preferentially accumulated in the higher trophic level.

All New Faces of Diatoms: Potential Source of Nanomaterials and Beyond

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Meerambika Mishra

2017-07-01

Full Text Available Nature’s silicon marvel, the diatoms have lately astounded the scientific community with its intricate designs and lasting durability. Diatoms are a major group of phytoplanktons involved in the biogeochemical cycling of silica and are virtually inherent in every environment ranging from water to ice to soil. The usage of diatoms has proved prudently cost effective and its handling neither requires costly materials nor sophisticated instruments. Diatoms can easily be acquired from the environment, their culture requires ambient condition and does not involve any costly media or expensive instruments, besides, they can be transported in small quantities and proliferated to a desirable confluence from that scratch, thus are excellent cost effective industrial raw material. Naturally occurring diatom frustules are a source of nanomaterials. Their silica bio-shells have raised curiosity among nanotechnologists who hope that diatoms will facilitate tailoring minuscule structures which are beyond the capabilities of material scientists. Additionally, there is a colossal diversity in the dimensions of diatoms as the frustule shape differs from species to species; this provides a scope for the choice of a particular species of diatom to be tailored to an exacting requisite, thus paving the way to create desired three dimensional nanocomposites. The present article explores the use of diatoms in various arenas of science, may it be in nanotechnology, biotechnology, environmental science, biophysics or biochemistry and summarizes facets of diatom biology under one umbrella. Special emphasis has been given to biosilicification, biomineralization and use of diatoms as nanomaterials’, drug delivery vehicles, optical and immune-biosensors, filters, immunodiagnostics, aquaculture feeds, lab-on-a-chip, metabolites, and biofuels.

Preparation and method of study of fossil diatoms

Digital Repository Service at National Institute of Oceanography (India)

Setty, M.G.A.P.

Two methods of chemical concentration of diatoms occurring in fresh-water sediments, and one chemico-mechanical method of concentration for diatoms occurring in marine sediments are outlined, with emphasis on the extreme care that needs...

Complex dynamics in diatomic molecules. Part II: Quantum trajectories

International Nuclear Information System (INIS)

Yang, C.-D.; Weng, H.-J.

2008-01-01

The second part of this paper deals with quantum trajectories in diatomic molecules, which has not been considered before in the literature. Morse potential serves as a more accurate function than a simple harmonic oscillator for illustrating a realistic picture about the vibration of diatomic molecules. However, if we determine molecular dynamics by integrating the classical force equations derived from a Morse potential, we will find that the resulting trajectories do not consist with the probabilistic prediction of quantum mechanics. On the other hand, the quantum trajectory determined by Bohmian mechanics [Bohm D. A suggested interpretation of the quantum theory in terms of hidden variable. Phys. Rev. 1952;85:166-179] leads to the conclusion that a diatomic molecule is motionless in all its vibrational eigen-states, which also contradicts probabilistic prediction of quantum mechanics. In this paper, we point out that the quantum trajectory of a diatomic molecule completely consistent with quantum mechanics does exist and can be solved from the quantum Hamilton equations of motion derived in Part I, which is based on a complex-space formulation of fractal spacetime [El Naschie MS. A review of E-Infinity theory and the mass spectrum of high energy particle physics. Chaos, Solitons and Fractals 2004;19:209-36; El Naschie MS. E-Infinity theory - some recent results and new interpretations. Chaos, Solitons and Fractals 2006;29:845-853; El Naschie MS. The concepts of E-infinity. An elementary introduction to the cantorian-fractal theory of quantum physics. Chaos, Solitons and Fractals 2004;22:495-511; El Naschie MS. SU(5) grand unification in a transfinite form. Chaos, Solitons and Fractals 2007;32:370-374; Nottale L. Fractal space-time and microphysics: towards a theory of scale relativity. Singapore: World Scientific; 1993; Ord G. Fractal space time and the statistical mechanics of random works. Chaos, Soiltons and Fractals 1996;7:821-843] approach to quantum

The history of cyanobacterial blooms in the Baltic Sea.

Science.gov (United States)

Finni, T; Kononen, K; Olsonen, R; Wallström, K

2001-08-01

Long-term information on possible changes in cyanobacterial blooms in the Baltic Sea, formed mainly by Nodularia spumigena and Aphanizomenon sp., was sought in published records in historical (years 1887-1938) and modern (years 1974-1998) phytoplankton data sets. Old and new sampling methods and fixatives were tested to improve the comparison of data that had been collected and analyzed in different ways. A hundred years ago, plankton was mainly of interest as a source of fish food; eutrophication problems were only locally reported from the coast, mainly in southern haffs and the receiving waters of larger cities. There were few recordings of open-sea blooms before World War II. Abundances of Nodularia spumigena and Aphanizomenon sp. were low in the old material, and 137 summer samples from 1887-1938 showed no peak abundance. High abundances are common in the new material, and the range of the numbers of both taxa has increased markedly relative to the old material. Since the 1960s, cyanobacterial blooms have been common in the open sea in both the Baltic proper and the Gulf of Finland, indicating high availability of nutrients.

THE INFLUENCE OF SUBMERGED MACROPHYTES ON SEDIMENTARY DIATOM ASSEMBLAGES(1).

Science.gov (United States)

Vermaire, Jesse C; Prairie, Yves T; Gregory-Eaves, Irene

2011-12-01

Submerged macrophytes are a central component of lake ecosystems; however, little is known regarding their long-term response to environmental change. We have examined the potential of diatoms as indicators of past macrophyte biomass. We first sampled periphyton to determine whether habitat was a predictor of diatom assemblage. We then sampled 41 lakes in Quebec, Canada, to evaluate whether whole-lake submerged macrophyte biomass (BiomEpiV) influenced surface sediment diatom assemblages. A multivariate regression tree (MRT) was used to construct a semiquantitative model to reconstruct past macrophyte biomass. We determined that periphytic diatom assemblages on macrophytes were significantly different from those on wood and rocks (ANOSIM R = 0.63, P macrophyte, nutrient-limited lakes (BiomEpiV ≥525 μg · L(-1) ; total phosphorus [TP] macrophyte, nutrient-limited lakes (BiomEpiV macrophytes have a significant influence on diatom community structure and that sedimentary diatom assemblages can be used to infer past macrophyte abundance. © 2011 Phycological Society of America.

Diatom Stratigraphy of FA-1 Core, Qarun Lake, Records of Holocene Environmental and Climatic Change in Faiyum Oasis, Egypt

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Zalat Abdelfattah A.

2017-06-01

Full Text Available This study evaluates changes in the environmental and climatic conditions in the Faiyum Oasis during the Holocene based on diatom analyses of the sediment FA-1 core from the southern seashore of the Qarun Lake. The studied FA-1 core was 26 m long and covered the time span ca. 9.000 cal. yrs BP. Diatom taxa were abundant and moderately to well-preserved throughout the core sediments. Planktonic taxa were most abundant than the benthic and epiphytic forms, which were very rare and sparsely distributed. The most dominant planktonic genera were Aulacoseira and Stephanodiscus followed by frequently distribution of Cyclostephanos and Cyclotella species. The stratigraphic distribution patterns of the recorded diatoms through the Holocene sediments explained five ecological diatom groups. These groups represent distinctive environmental conditions, which were mainly related to climatic changes through the early and middle Holocene, in addition to anthropogenic activity during the late Holocene. Comparison of diatom assemblages in the studied sediment core suggests that considerable changes occurred in water level as well as salinity. There were several high stands of the freshwater lake level during humid, warmer-wet climatic phases marked by dominance of planktonic, oligohalobous and alkaliphilous diatoms alternated with lowering of the lake level and slight increases in salinity and alkalinity during warm arid conditions evident by prevalence of brackish water diatoms.

Genetic and metabolic engineering in diatoms.

Science.gov (United States)

Huang, Weichao; Daboussi, Fayza

2017-09-05

Diatoms have attracted considerable attention due to their success in diverse environmental conditions, which probably is a consequence of their complex origins. Studies of their metabolism will provide insight into their adaptation capacity and are a prerequisite for metabolic engineering. Several years of investigation have led to the development of the genome engineering tools required for such studies, and a profusion of appropriate tools is now available for exploring and exploiting the metabolism of these organisms. Diatoms are highly prized in industrial biotechnology, due to both their richness in natural lipids and carotenoids and their ability to produce recombinant proteins, of considerable value in diverse markets. This review provides an overview of recent advances in genetic engineering methods for diatoms, from the development of gene expression cassettes and gene delivery methods, to cutting-edge genome-editing technologies. It also highlights the contributions of these rapid developments to both basic and applied research: they have improved our understanding of key physiological processes; and they have made it possible to modify the natural metabolism to favour the production of specific compounds or to produce new compounds for green chemistry and pharmaceutical applications.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

Isolation and biochemical characterization of underwater adhesives from diatoms.

Science.gov (United States)

Poulsen, Nicole; Kröger, Nils; Harrington, Matthew J; Brunner, Eike; Paasch, Silvia; Buhmann, Matthias T

2014-01-01

Many aquatic organisms are able to colonize surfaces through the secretion of underwater adhesives. Diatoms are unicellular algae that have the capability to colonize any natural and man-made submerged surfaces. There is great technological interest in both mimicking and preventing diatom adhesion, yet the biomolecules responsible have so far remained unidentified. A new method for the isolation of diatom adhesive material is described and its amino acid and carbohydrate composition determined. The adhesive materials from two model diatoms show differences in their amino acid and carbohydrate compositions, but also share characteristic features including a high content of uronic acids, the predominance of hydrophilic amino acid residues, and the presence of 3,4-dihydroxyproline, an extremely rare amino acid. Proteins containing dihydroxyphenylalanine, which mediate underwater adhesion of mussels, are absent. The data on the composition of diatom adhesives are consistent with an adhesion mechanism based on complex coacervation of polyelectrolyte-like biomolecules.

Epipsammic diatoms in streams influenced by urban pollution, São Carlos, SP, Brazil

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T. Bere

Full Text Available Epipsammic diatoms have important implications for ecosystem processes in lotic environments. Most of the studies on benthic diatoms concentrate on epilithic diatoms and very little is known about epipsammic diatoms. The objective of this study was to assess epipsammic diatom communities in streams in relation to environmental conditions. Epipsammic diatoms and water quality sampling was done at 7 sites during summer base flow period (2008. Forward stepwise multiple regression and canonical correspondence analysis (CCA were used to determine environmental gradients along which species vary with physical and chemical variables. A total of 112 diatom species distributed among 44 genera were recorded. Altitude and the process of eutrophication played a significant role in structuring diatom communities in the study region.

Oil Spills and Dispersants Can Cause the Initiation of Potentially Harmful Dinoflagellate Blooms ("Red Tides").

Science.gov (United States)

Almeda, Rodrigo; Cosgrove, Sarah; Buskey, Edward J

2018-04-25

After oil spills and dispersant applications the formation of red tides or harmful algal blooms (HABs) has been observed, which can cause additional negative impacts in areas affected by oil spills. However, the link between oil spills and HABs is still unknown. Here, we present experimental evidence that demonstrates a connection between oil spills and HABs. We determined the effects of oil, dispersant-treated oil, and dispersant alone on the structure of natural plankton assemblages in the Northern Gulf of Mexico. In coastal waters, large tintinnids and oligotrich ciliates, major grazers of phytoplankton, were negatively affected by the exposure to oil and dispersant, whereas bloom-forming dinoflagellates ( Prorocentrum texanum, P. triestinum, and Scrippsiella trochoidea) notably increased their concentration. The removal of key grazers due to oil and dispersant disrupts the predator-prey controls ("top-down controls") that normally function in plankton food webs. This disruption of grazing pressure opens a "loophole" that allows certain dinoflagellates with higher tolerance to oil and dispersants than their grazers to grow and form blooms when there are no growth limiting factors (e.g., nutrients). Therefore, oil spills and dispersants can act as disrupters of predator-prey controls in plankton food webs and as indirect inducers of potentially harmful dinoflagellate blooms.

Codon adaptation and synonymous substitution rate in diatom plastid genes.

Science.gov (United States)

Morton, Brian R; Sorhannus, Ulf; Fox, Martin

2002-07-01

Diatom plastid genes are examined with respect to codon adaptation and rates of silent substitution (Ks). It is shown that diatom genes follow the same pattern of codon usage as other plastid genes studied previously. Highly expressed diatom genes display codon adaptation, or a bias toward specific major codons, and these major codons are the same as those in red algae, green algae, and land plants. It is also found that there is a strong correlation between Ks and variation in codon adaptation across diatom genes, providing the first evidence for such a relationship in the algae. It is argued that this finding supports the notion that the correlation arises from selective constraints, not from variation in mutation rate among genes. Finally, the diatom genes are examined with respect to variation in Ks among different synonymous groups. Diatom genes with strong codon adaptation do not show the same variation in synonymous substitution rate among codon groups as the flowering plant psbA gene which, previous studies have shown, has strong codon adaptation but unusually high rates of silent change in certain synonymous groups. The lack of a similar finding in diatoms supports the suggestion that the feature is unique to the flowering plant psbA due to recent relaxations in selective pressure in that lineage.

Quantification of diatoms in biofilms: Standardisation of methods

Digital Repository Service at National Institute of Oceanography (India)

Patil, J.S.; Anil, A.C.

of the difficulty in sampling and enumeration. Scraping or brushing are the traditional methods used for removal of diatoms from biofilms developed on solid substrata. The method of removal is the most critical step in enumerating the biofilm diatom community...

A diatom functional-based approach to assess changing environmental conditions in temporary depressional wetlands

CSIR Research Space (South Africa)

Riato, L

2017-07-01

Full Text Available is limited although important for the development of temporary wetland biological assessments. We assessed how diatom life-form and ecological guilds responded to a seasonal hydrological and hydrochemical gradient in three least human-disturbed, temporary...

Estrutura sazonal e espacial do microfitoplâncton no estuário tropical do rio Formoso, PE, Brasil Seasonal and spatial structure of microphytoplankton in the tropical estuary of Formoso River, Pernambuco State, Brazil

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Marcos Honorato da Silva

2009-06-01

Full Text Available Este trabalho teve como objetivo determinar as variações espaço-temporal do microfitoplâncton e variáveis ambientais no estuário do rio Formoso, litoral sul do estado de Pernambuco. As coletas ocorreram em três pontos, no período chuvoso (maio a julho/2002 e estiagem (outubro a dezembro/2002. As amostras do plâncton foram obtidas através de arrastos horizontais superficiais, com rede de abertura de malha de 64¼m. Foram registrados in situ dados sobre temperatura e transparência e, concomitantemente, coletadas amostras de água utilizando a garrafa tipo Kitahara para a análise de salinidade, pH, oxigênio dissolvido, sais nutrientes e biomassa. Foram identificados 204 táxons predominando o grupo das diatomáceas (75%, destacando-se como dominantes Chaetoceros costatus Pavillard, Chaetoceros curvisetus Cleve, Chaetoceros sp., Coscinodiscus centralis Ehrenberg, seguidas dos dinoflagelados (10,79%, cianofíceas (6,37%, clorofíceas (3,92%, euglenofíceas (3,43% e silicoflagelados (0,49%. As concentrações de oxigênio demonstraram uma alta capacidade de renovação do ambiente devido ao aporte de águas marinhas; maiores concentrações de nutrientes e biomassa algácea ocorreram durante o período chuvoso e nas baixa-mares. A pluviometria e o aporte marinho foram os parâmetros que mais influenciaram na hidrologia e na distribuição da comunidade fitoplanctônica com reflexo na riqueza taxonômica.This work aimed to evaluate spatial and temporal variations of the microphytoplankton and environmental variables in the Formoso River estuary, southern coast of Pernambuco state. The samples were collected at three stations, in the rainy season (May to July/2002 and dry season (October to December/2002. The plankton samples were obtained through horizontal superficial hauls, with a 64ìm-mesh net. Temperature and transparency were recorded in situ and, at the same time, water samples were collected using a Kitahara bottle to analyze

Diatom-Based Paleoenvironmental Reconstruction of Lake Telmen for the Last 6230 Years

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N.Soninkhishig

2003-06-01

Full Text Available The preserved diatom flora in a 14C dated (0-6230 yBP, 343 cm long core sequence from Lake Telmen, Mongolia, was investigated to determine the nature of the lake-ecosystem and watershed response to Late Holocene climate change. Modern Lake Telmen is a slightly saline (presently 4 g L-1 closed- basin lake located along a N-S and E-W aridity ecotone in north-central Mongolia, making it sensitive to climate-driven changes in effective moisture balance. Diatoms were not preserved regularly in two areas of the Lake Telmen sediment record (5380-41 50 yBP and 1050-425 yBP possibly due to high carbonate preservation; however, diatom preservation between these areas was good to excellent. Diatom-based paleosalinity reconstruction using species-specific salinity optima from the Northern Great Plains of North America and community analysis suggests the following climate-lake response model during the Late Holocene. From 6230 to 5520 radiocarbon years ago, warm-dry climate resulted in a small salty (20 g L-1 lake in the Telmen basin that was dominated by high salinity indicator species (e.g. Cyclotella caspia, Navicellapusilla, Brachysira aponina. From 3 860 to 1200 radiocarbon yBP, Lake Telmen recorded a period of a modulating climate that resulted in regular fluctuations in paleosalinity from 2 to 4 g L-1 in conjunction with lake level changes. Dominance in the diatom flora fluctuated between the freshwater planktonic form Cyclotella bodanica var. affinis and the salinity-tolerant benthic taxon Anomoeoneis sphaerophora f. costata during this period characterized by generally more humid climatic periods interspersed with dry-as-present conditions. The most modern samples (0-250 yBP preserve floristic assemblages similar to those found between 3860 to 1200 radiocarbon yBP and indicate that as recently as 250 years ago Lake Telmen had lower salinity values than modern day.

Modified Ribose Receptor Response in Isolated Diatom Frustules

Energy Technology Data Exchange (ETDEWEB)

Fairbanks, Carly R.

2011-08-26

Diatoms are a distinctive group of microalgae with the unique ability to produce a highly-ordered biosilica matrix, known as the frustule. Diatoms hold significant potential in the biotechnology field as a silica scaffold for embedding proteins. In this study, we analyzed the funtionalization of biosilica with a receptor complex through genetic modification of the diatom, Thalassiosira pseudonana. Through the use of Foerster Resonance Energy Transfer (FRET), the receptor was shown to remain active in transformed frustules after the inner cellular contents were removed. In addition to protein functionality, growth conditions for T. pseudonana were optimized. Untransformed cultures receiving aeration grew more rapidly than stagnant untransformed cultures. Surprisingly, transformed cultures grew more quickly than untransformed cultures. This study demonstrates isolated diatom frustules provide an effective scaffold for embedded receptor complexes. Through this research, we provide the groundwork for the development of new biosensors for use in diagnostics and environmental remediation.

Competition for inorganic and organic forms of nitrogen and phosphorous between phytoplankton and bacteria during an Emiliania huxleyi spring bloom

Directory of Open Access Journals (Sweden)

V. Martin-Jézéquel

2008-03-01

Full Text Available Using 15N and 33P, we measured the turnover of organic and inorganic nitrogen (N and phosphorus (P substrates, and the partitioning of N and P from these sources into two size fractions of marine osmotrophs during the course of a phytoplankton bloom in a nutrient manipulated mesocosm. The larger size fraction (>0.8 μm, mainly consisting of the coccolithophorid Emiliania huxleyi, but also including an increasing amount of large particle-associated bacteria as the bloom proceeded, dominated uptake of the inorganic forms NH4+, NO3−, and PO43−. The uptake of N from leucine, and P from ATP and dissolved DNA, was initially dominated by the 0.8–0.2 μm size fraction, but shifted towards dominance by the >0.8 μm size fraction as the system turned to an increasing degree of N-deficiency. Normalizing uptake to biomass of phytoplankton and heterotrophic bacteria revealed that organisms in the 0.8–0.2 μm size fraction had higher specific affinity for leucine-N than those in the >0.8 μm size fraction when N was deficient, whereas the opposite was the case for NH4+. There was no such difference regarding the specific affinity for P substrates. Since heterotrophic bacteria seem to acquire N from organic compounds like leucine more efficiently than phytoplankton, our results suggest different structuring of the microbial food chain in N-limited relative to P-limited environments.

Diatoms on the carapace of common snapping turtles: Luticola spp. dominate despite spatial variation in assemblages.

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Shelly C Wu

Full Text Available Filamentous algae are often visible on the carapaces of freshwater turtles and these algae are dominated by a few species with varying geographic distributions. Compared to filamentous algae, little is known about the much more speciose microalgae on turtles. Our objectives were to compare the diatom flora on a single turtle species (the common snapping turtle, Chelydra serpentina across part of its range to examine spatial patterns and determine whether specific diatom taxa were consistently associated with turtles (as occurs in the filamentous alga Basicladia spp.. Using preserved turtle specimens from museums, we systematically sampled diatoms on the carapaces of 25 snapping turtles across five states. The diverse diatom assemblages formed two groups-the southern Oklahoma group and the northern Illinois/Wisconsin/New York group, with Arkansas not differing from either group. Of the six diatom species found in all five states, four species are widespread, whereas Luticola cf. goeppertiana and L. cf. mutica are undescribed species, known only from turtles in our study. L. cf. goeppertiana comprised 83% of the diatom abundance on Oklahoma turtles and was relatively more abundant on southern turtles (Oklahoma and Arkansas than on northern turtles (where mean abundance/state was > 10%. L. cf. mutica was the most abundant species (40% on New York turtles. Some Luticola species are apparently turtle associates and results support a pattern of spatial variation in Luticola species, similar to that in Basicladia. Using museum specimens is an efficient and effective method to study the distribution of micro-epibionts.

Diatoms on the carapace of common snapping turtles: Luticola spp. dominate despite spatial variation in assemblages

Science.gov (United States)

Wu, Shelly C.; Bergey, Elizabeth A.

2017-01-01

Filamentous algae are often visible on the carapaces of freshwater turtles and these algae are dominated by a few species with varying geographic distributions. Compared to filamentous algae, little is known about the much more speciose microalgae on turtles. Our objectives were to compare the diatom flora on a single turtle species (the common snapping turtle, Chelydra serpentina) across part of its range to examine spatial patterns and determine whether specific diatom taxa were consistently associated with turtles (as occurs in the filamentous alga Basicladia spp.). Using preserved turtle specimens from museums, we systematically sampled diatoms on the carapaces of 25 snapping turtles across five states. The diverse diatom assemblages formed two groups–the southern Oklahoma group and the northern Illinois/Wisconsin/New York group, with Arkansas not differing from either group. Of the six diatom species found in all five states, four species are widespread, whereas Luticola cf. goeppertiana and L. cf. mutica are undescribed species, known only from turtles in our study. L. cf. goeppertiana comprised 83% of the diatom abundance on Oklahoma turtles and was relatively more abundant on southern turtles (Oklahoma and Arkansas) than on northern turtles (where mean abundance/state was > 10%). L. cf. mutica was the most abundant species (40%) on New York turtles. Some Luticola species are apparently turtle associates and results support a pattern of spatial variation in Luticola species, similar to that in Basicladia. Using museum specimens is an efficient and effective method to study the distribution of micro-epibionts. PMID:28192469

Comparing optical properties of different species of diatoms

DEFF Research Database (Denmark)

Maibohm, Christian; Friis, Søren Michael Mørk; Su, Y.

2015-01-01

species dependent with huge variety in size, shape, and micro- structure. We have experimentally investigated optical properties of frustules of several species of diatoms to further understand light harvesting properties together with commo n traits, effects and differences between the different...... analysis software. The software uses parameters which are extracted from experimental im ages as basis for simulation and allows us to extract the influence of the different elements of the frustule. The information could be used both for predicting optical properties of diatoms and by changing frustule...... parameters, maybe by altering growth conditions of the diatoms tailor their optical properties....

A new cell primo-culture method for freshwater benthic diatom communities

OpenAIRE

Debenest, Timothée; Silvestre, Jérôme; Coste, Michel; Delmas, François; Pinelli, Eric

2009-01-01

A new cell primo-culture method was developed for the benthic diatom community isolated from biofilm sampled in rivers. The approach comprised three steps: (1) scraping biofilm from river pebbles, (2) diatom isolation from biofilm, and (3) diatom community culture. With a view to designing a method able to stimulate the growth of diatoms, to limit the development of other microorganisms, and to maintain in culture a community similar to the original natural one, different factors were test...

Diatoms: a fossil fuel of the future.

Science.gov (United States)

Levitan, Orly; Dinamarca, Jorge; Hochman, Gal; Falkowski, Paul G

2014-03-01

Long-term global climate change, caused by burning petroleum and other fossil fuels, has motivated an urgent need to develop renewable, carbon-neutral, economically viable alternatives to displace petroleum using existing infrastructure. Algal feedstocks are promising candidate replacements as a 'drop-in' fuel. Here, we focus on a specific algal taxon, diatoms, to become the fossil fuel of the future. We summarize past attempts to obtain suitable diatom strains, propose future directions for their genetic manipulation, and offer biotechnological pathways to improve yield. We calculate that the yields obtained by using diatoms as a production platform are theoretically sufficient to satisfy the total oil consumption of the US, using between 3 and 5% of its land area. Copyright © 2014 Elsevier Ltd. All rights reserved.

Effect of the Silica Content of Diatoms on Protozoan Grazing

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Shuwen Zhang

2017-06-01

Full Text Available This study examined the effect that silica content in diatom cells has on the behavior of protists. The diatoms Thalassiosira weissflogii and T. pseudonana were cultured in high or low light conditions to achieve low and high silica contents, respectively. These cells were then fed to a heterotrophic dinoflagellate Noctiluca scintillans and a ciliate Euplotes sp. in single and mixed diet experiments. Our results showed that in general, N. scintillans and Euplotes sp. both preferentially ingested the diatoms with a low silica content rather than those with a high silica content. However, Euplotes sp. seemed to be less influenced by the silica content than was N. scintillans. In the latter case, the clearance and ingestion rate of the low silica diatoms were significantly higher, both in the short (6-h and long (1-d duration grazing experiments. Our results also showed that N. scintillans required more time to digest the high silica-containing cells. As the high silica diatoms are harder to digest, this might explain why N. scintillans exhibits a strong preference for the low silica prey. Thus, the presence of high silica diatoms might limit the ability of the dinoflagellate to feed. Our findings suggest that the silica content of diatoms affects their palatability and digestibility and, consequently, the grazing activity and selectivity of protozoan grazers.

Under Sea Ice phytoplankton bloom detection and contamination in Antarctica

Science.gov (United States)

Zeng, C.; Zeng, T.; Xu, H.

2017-12-01

Previous researches reported compelling sea ice phytoplankton bloom in Arctic, while seldom reports studied about Antarctic. Here, lab experiment showed sea ice increased the visible light albedo of the water leaving radiance. Even a new formed sea ice of 10cm thickness increased water leaving radiance up to 4 times of its original bare water. Given that phytoplankton preferred growing and accumulating under the sea ice with thickness of 10cm-1m, our results showed that the changing rate of OC4 estimated [Chl-a] varied from 0.01-0.5mg/m3 to 0.2-0.3mg/m3, if the water covered by 10cm sea ice. Going further, varying thickness of sea ice modulated the changing rate of estimating [Chl-a] non-linearly, thus current routine OC4 model cannot estimate under sea ice [Chl-a] appropriately. Besides, marginal sea ice zone has a large amount of mixture regions containing sea ice, water and snow, where is favorable for phytoplankton. We applied 6S model to estimate the sea ice/snow contamination on sub-pixel water leaving radiance of 4.25km spatial resolution ocean color products. Results showed that sea ice/snow scale effectiveness overestimated [Chl-a] concentration based on routine band ratio OC4 model, which contamination increased with the rising fraction of sea ice/snow within one pixel. Finally, we analyzed the under sea ice bloom in Antarctica based on the [Chl-a] concentration trends during 21 days after sea ice retreating. Regardless of those overestimation caused by sea ice/snow sub scale contamination, we still did not see significant under sea ice blooms in Antarctica in 2012-2017 compared with Arctic. This research found that Southern Ocean is not favorable for under sea ice blooms and the phytoplankton bloom preferred to occur in at least 3 weeks after sea ice retreating.

Transfer of seston lipids during a flagellate bloom from the surface to the benthic community in the Weddell Sea

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Sergio Rossi

2013-09-01

Full Text Available Total lipid and fatty acid concentrations were studied in a late spring-early summer flagellate-dominated bloom in the Weddell Sea. These indicators were considered a good tool for assessing the quality of organic matter settling from surface to deep-water layers (epibenthic water layers. The results showed different patterns between the early (11-15 December 2003 and the late sampling period (18-27 December 2003 at all studied depths (5 m, 50 m and near-bottom water layers. Low phytoplankton biomass (mainly flagellates in the first half of the study corresponded to low total lipid and fatty acid concentrations. In the second sampling period a spring bloom (mainly flagellates and diatoms was detected, increasing the total lipid and fatty acid concentrations in the water column. The amount of settling organic matter from surface waters to the near-bottom water layers was high, especially in the late sampling period. Trophic markers showed evidence of a sink of available organic matter rich in quality and quantity, especially in terms of polyunsaturated fatty acids, for benthic organisms from surface layers to bottom layers in only a few days. The importance of studying short-time cycles in order to detect organic matter availability for benthic biota in view of the pulse-like dynamics of primary production in Antarctic waters is discussed.

PHYTOPLANKTON ASSEMBLAGES AT FISH FARM IN MASLINOVA BAY (THE ISLAND OF BRAČ

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Sanda Skejić

2012-07-01

Full Text Available The aim of this study was to establish phytoplankton composition at the sea bream (Sparus aurata and sea bass (Dicentrarchus labrax fish farm in the middle Adriatic Sea. The investigation was performed from September 2005 to September 2006 at a station located in Maslinova Bay at the island of Brač. Considering the whole research period, diatoms generally prevailed in terms of abundance while dinoflagellates were particularly abundant in June. Number of species of diatoms in comparison to dinoflagellates through the investigated period was similar. From 111 species of phytoplankton found, there were 55 species of Bacillariophyceae (diatoms, 47 species of Dinophyta (dinoflagellates, 5 species of Prymnesiophyceae, 3 Chrysophyceae and 1 Euglenophyta. Among the diatoms, the majority of species belonged to genus Chaetoceros. The most represented dinoflagellate genera were Oxytoxum and Gymnodinium. There were no considerable differences in phytoplankton composition with respect to different depths, but seasonal influence was significant. Biodiversity and abundance ranges of phytoplankton species indicated good water conditions and there were no evident alterations induced by the increased release of nutrients.

Automated Diatom Classification (Part A: Handcrafted Feature Approaches

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Gloria Bueno

2017-07-01

Full Text Available This paper deals with automatic taxa identification based on machine learning methods. The aim is therefore to automatically classify diatoms, in terms of pattern recognition terminology. Diatoms are a kind of algae microorganism with high biodiversity at the species level, which are useful for water quality assessment. The most relevant features for diatom description and classification have been selected using an extensive dataset of 80 taxa with a minimum of 100 samples/taxon augmented to 300 samples/taxon. In addition to published morphological, statistical and textural descriptors, a new textural descriptor, Local Binary Patterns (LBP, to characterize the diatom’s valves, and a log Gabor implementation not tested before for this purpose are introduced in this paper. Results show an overall accuracy of 98.11% using bagging decision trees and combinations of descriptors. Finally, some phycological features of diatoms that are still difficult to integrate in computer systems are discussed for future work.

Cationic amino acids specific biomimetic silicification in ionic liquid: a quest to understand the formation of 3-D structures in diatoms.

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Rajesh Ramanathan

Full Text Available The intricate, hierarchical, highly reproducible, and exquisite biosilica structures formed by diatoms have generated great interest to understand biosilicification processes in nature. This curiosity is driven by the quest of researchers to understand nature's complexity, which might enable reproducing these elegant natural diatomaceous structures in our laboratories via biomimetics, which is currently beyond the capabilities of material scientists. To this end, significant understanding of the biomolecules involved in biosilicification has been gained, wherein cationic peptides and proteins are found to play a key role in the formation of these exquisite structures. Although biochemical factors responsible for silica formation in diatoms have been studied for decades, the challenge to mimic biosilica structures similar to those synthesized by diatoms in their natural habitats has not hitherto been successful. This has led to an increasingly interesting debate that physico-chemical environment surrounding diatoms might play an additional critical role towards the control of diatom morphologies. The current study demonstrates this proof of concept by using cationic amino acids as catalyst/template/scaffold towards attaining diatom-like silica morphologies under biomimetic conditions in ionic liquids.

Detection of Coccolithophore Blooms in Ocean Color Satellite Imagery: a Generalized Approach for Use with Multiple Sensors

Science.gov (United States)

Moore, Timothy; Dowell, Mark; Franz, Bryan A.

2012-01-01

A generalized coccolithophore bloom classifier has been developed for use with ocean color imagery. The bloom classifier was developed using extracted satellite reflectance data from SeaWiFS images screened by the default bloom detection mask. In the current application, we extend the optical water type (OWT) classification scheme by adding a new coccolithophore bloom class formed from these extracted reflectances. Based on an in situ coccolithophore data set from the North Atlantic, the detection levels with the new scheme were between 1,500 and 1,800 coccolithophore cellsmL and 43,000 and 78,000 lithsmL. The detected bloom area using the OWT method was an average of 1.75 times greater than the default bloom detector based on a collection of SeaWiFS 1 km imagery. The versatility of the scheme is shown with SeaWiFS, MODIS Aqua, CZCS and MERIS imagery at the 1 km scale. The OWT scheme was applied to the daily global SeaWiFS imagery mission data set (years 19972010). Based on our results, average annual coccolithophore bloom area was more than two times greater in the southern hemisphere compared to the northern hemi- sphere with values of 2.00 106 km2 and 0.75 106 km2, respectively. The new algorithm detects larger bloom areas in the Southern Ocean compared to the default algorithm, and our revised global annual average of 2.75106 km2 is dominated by contributions from the Southern Ocean.

Diatom-based water quality monitoring in southern Africa ...

African Journals Online (AJOL)

The purpose of this review is to summarise the challenges and future prospects associated with biological water quality monitoring using diatoms with special focus on southern Africa. Much work still needs to be carried out on diatom tolerances, ecological preferences and ecophysiology. It is recommended that past ...

Bioactive Compounds from Omani Sea Cucumbers

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Sergey Dobretsov

2009-01-01

Full Text Available Antimicrobial, anti-diatom and anti-larval activities of both water soluble (water  extracts and non-water soluble metabolites (methanol: chlorophorm, 1:1 extracts of the sea cucumbers Holothuria atra and Holothuria edulis  from Bander AL-Khiran region, Oman were tested in this study. There was no significant effect of  the extracts from sea cucumbers on bacterial (3 reference bacteria from seawater and pathogens  Escherichia coli, Staphylococcus aureus, Klebsiella pneumoniae, Pseudomonas aeruginosa,  Streptococcus pneumoniae, Streptococcus pyogenes, Staphylococcus epidermidis and the diatom  Chaetoceros sp. growth. Both water extracts and methanol: chlorophorm extracts caused significant mortality of Artemia salina nauplia. This study suggests that Omani sea cucumbers might be a good  source of toxic anti-larval compounds.

Interactions between the antimicrobial agent triclosan and the bloom-forming cyanobacteria Microcystis aeruginosa

International Nuclear Information System (INIS)

Huang, Xiaolong; Tu, Yenan; Song, Chaofeng; Li, Tiancui; Lin, Juan; Wu, Yonghong; Liu, Jiantong; Wu, Chenxi

2016-01-01

Highlights: • Triclosan inhibit the growth and photosynthesis of M. aeruginosa at environmental relevant level. • TEM imaging showed destruction of M. aeruginosa cell ultrastructure during triclosan exposure. • Triclosan can be biotransformed by M. aeruginosa with methylation as a major pathway. • Presence of M. aeruginosa enhanced the photodegradation of triclosan. - Abstract: Cyanobacteria can co-exist in eutrophic waters with chemicals or other substances derived from personal care products discharged in wastewater. In this work, we investigate the interactions between the antimicrobial agent triclosan (TCS) and the bloom-forming cyanobacteria Microcystis aeruginosa. M. aeruginosa was very sensitive to TCS with the 96 h lowest observed effect concentration of 1.0 and 10 μg/L for inhibition of growth and photosynthetic activity, respectively. Exposure to TCS at environmentally relevant levels (0.1–2.0 μg/L) also affected the activities of superoxide dismutase (SOD) and the generation of reduced glutathione (GSH), while microcystin production was not affected. Transmission electron microscope (TEM) examination showed the destruction of M. aeruginosa cell ultrastructure during TCS exposure. TCS however, can be biotransformed by M. aeruginosa with methylation as a major biotransformation pathway. Furthermore, the presence of M. aeruginosa in solution promoted the photodegradation of TCS. Overall, our results demonstrate that M. aeruginosa plays an important role in the dissipation of TCS in aquatic environments but high residual TCS can exert toxic effects on M. aeruginosa.

Interactions between the antimicrobial agent triclosan and the bloom-forming cyanobacteria Microcystis aeruginosa

Energy Technology Data Exchange (ETDEWEB)

Huang, Xiaolong [State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072 (China); Wuhan Zhongke Hydrobiological Environment Engineering Co., Ltd, Wuhan 430071 (China); Tu, Yenan; Song, Chaofeng; Li, Tiancui; Lin, Juan [State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072 (China); Graduate University of the Chinese Academy of Sciences, Beijing 100049 (China); Wu, Yonghong [State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Sciences, Chinese Academy of Sciences, Nanjing 210008 (China); Liu, Jiantong [State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072 (China); Wu, Chenxi, E-mail: chenxi.wu@ihb.ac.cn [State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072 (China)

2016-03-15

Highlights: • Triclosan inhibit the growth and photosynthesis of M. aeruginosa at environmental relevant level. • TEM imaging showed destruction of M. aeruginosa cell ultrastructure during triclosan exposure. • Triclosan can be biotransformed by M. aeruginosa with methylation as a major pathway. • Presence of M. aeruginosa enhanced the photodegradation of triclosan. - Abstract: Cyanobacteria can co-exist in eutrophic waters with chemicals or other substances derived from personal care products discharged in wastewater. In this work, we investigate the interactions between the antimicrobial agent triclosan (TCS) and the bloom-forming cyanobacteria Microcystis aeruginosa. M. aeruginosa was very sensitive to TCS with the 96 h lowest observed effect concentration of 1.0 and 10 μg/L for inhibition of growth and photosynthetic activity, respectively. Exposure to TCS at environmentally relevant levels (0.1–2.0 μg/L) also affected the activities of superoxide dismutase (SOD) and the generation of reduced glutathione (GSH), while microcystin production was not affected. Transmission electron microscope (TEM) examination showed the destruction of M. aeruginosa cell ultrastructure during TCS exposure. TCS however, can be biotransformed by M. aeruginosa with methylation as a major biotransformation pathway. Furthermore, the presence of M. aeruginosa in solution promoted the photodegradation of TCS. Overall, our results demonstrate that M. aeruginosa plays an important role in the dissipation of TCS in aquatic environments but high residual TCS can exert toxic effects on M. aeruginosa.

Interactions between algal-bacterial populations and trace metals in fjord surface waters during a nutrient stimulated summer bloom

DEFF Research Database (Denmark)

Muller, F.; Larsen, A.; Stedmon, C.

2005-01-01

We examined how variations in algal-bacterial community structure relate to Cu, Zn, and Mn speciation during a diatom-rich bloom that was induced by daily additions of inorganic macronutrients to fjord waters in August 2002. The experiments were carried out in 11-m3 floating mesocosm bags deployed...... in the Raunefjord, near Bergen, Norway, and operated in a chemostat (flow-through) mode. Copper speciation was controlled by the formation of very strong organic complexes (log K1' = 15.2-15.8; log 1' = 13.0-13.4) whose likely source was the cyanobacterium Synechococcus sp. Strong ligand concentrations were...... this period, the weaker Cu-binding ligands appeared to have the same source or production process as the proteinlike fluorophores detected in these coastal waters. Zinc speciation was controlled by complexation with a single class of organic ligands that appeared to be released inadvertently upon the death...

Subsurface phytoplankton blooms fuel pelagic production in the North Sea

DEFF Research Database (Denmark)

Richardson, Kathrine; Visser, Andre; Pedersen, Flemming

2000-01-01

The seasonal phytoplankton biomass distribution pattern in stratified temperate marine waters is traditionally depicted as consisting of spring and autumn blooms. The energy source supporting pelagic summer production is believed to be the spring bloom. However, the spring bloom disappears...... relatively quickly from the water column and a large proportion of the material sedimenting to the bottom following the spring bloom is often comprised of intact phytoplankton cells. Thus, it is easy to argue that the spring bloom is fueling the energy demands of the benthos, but more difficult to argue...... convincingly that energy fixed during the spring bloom is fueling the pelagic production occurring during summer months. We argue here that periodic phytoplankton blooms are occurring during the summer in the North Sea at depths of >25 m and that the accumulated new production [sensu (Dugdale and Goering...

El Niño-related offshore phytoplankton bloom events around the Spratley Islands in the South China Sea

Science.gov (United States)

Isoguchi, Osamu; Kawamura, Hiroshi; Ku-Kassim, Ku-Yaacob

2005-11-01

Satellite chlorophyll-a (Chl-a) observations reveal offshore phytoplankton bloom events with high Chl-a (>1 mg m-3) spreading over 300 km off the coasts around the Spratley Islands in the South China Sea (SCS) during the spring of 1998. The bloom entails anomalous wind jet and sea surface temperature (SST) cooling, suggesting that the wind jet-induced mixing and/or offshore upwelling bring about the cooling and the bloom through the supply of nutrient-rich waters into the euphotic zone. The strong wind jet is orographically formed responding to shifts in wind direction over the eastern SCS. The wind shift is connected with the Philippine Sea anomalous anticyclone that is established during El Niño, indicating the El Niño-related offshore bloom. The long-term reanalysis winds over the eastern SCS demonstrates that wind jet formation and associated offshore cooling/bloom are expected to occur in most cases of the subsequent El Niño years.

The diversity and structure of marine protists in the coastal waters of China revealed by morphological observation and 454 pyrosequencing

Science.gov (United States)

Liu, Yun; Song, Shuqun; Chen, Tiantian; Li, Caiwen

2017-04-01

Pyrosequencing of the 18S rRNA gene has been widely adopted to study the eukaryotic diversity in various types of environments, and has an advantage over traditional morphology methods in exploring unknown microbial communities. To comprehensively assess the diversity and community composition of marine protists in the coastal waters of China, we applied both morphological observations and high-throughput sequencing of the V2 and V3 regions of 18S rDNA simultaneously to analyze samples collected from the surface layer of the Yellow and East China Seas. Dinoflagellates, diatoms and ciliates were the three dominant protistan groups as revealed by the two methods. Diatoms were the first dominant protistan group in the microscopic observations, with Skeletonema mainly distributed in the nearshore eutrophic waters and Chaetoceros in higher temperature and higher pH waters. The mixotrophic dinoflagellates, Gymnodinium and Gyrodinium, were more competitive in the oligotrophic waters. The pyrosequencing method revealed an extensive diversity of dinoflagellates. Chaetoceros was the only dominant diatom group in the pyrosequencing dataset. Gyrodinium represented the most abundant reads and dominated the offshore oligotrophic protistan community as they were in the microscopic observations. The dominance of parasitic dinoflagellates in the pyrosequencing dataset, which were overlooked in the morphological observations, indicates more attention should be paid to explore the potential role of this group. Both methods provide coherent clustering of samples. Nutrient levels, salinity and pH were the main factors influencing the distribution of protists. This study demonstrates that different primer pairs used in the pyrosequencing will indicate different protistan community structures. A suitable marker may reveal more comprehensive composition of protists and provide valuable information on environmental drivers.

Distribution and development of algal photosynthesis in sea ice during a spring bloom: A novel application of Imaging-PAM fluorometry

DEFF Research Database (Denmark)

Hawes, Ian; Lund-Hansen, Lars Chresten; Sorrell, Brian Keith

were able to migrate with ice growth. Furthermore, increases in maximum fluorescence (Fm) and photosynthesis yield (Y) allowed us to document the progression of a spring bloom in algal biomass and activity. Maximum light intensities in the ice algal communities were ca. 40 µmol PPFD m-2 s-1 and light......Sea ice algae are important marine primary producers that may contribute as much as 15% of total global carbon fixation. The difficulties of studying photosynthesis in ice have, however, hampered accurate assessments of their productivity, and much previous research has involved liquid...... cores from the Kangerlussuaq Fjord, Greenland, over two weeks in March 2011, and used Imaging-PAM to explore the spatial distribution of algal biomass (predominantly pennate diatoms), fluorescence yield, and light response curves. Algae were largely confined to the lowest 1 cm of the ice column, where...

Algal blooms: a perspective from the coasts of India

Digital Repository Service at National Institute of Oceanography (India)

DeSilva, M.S.; Anil, A.C.; Naik, R.K.; DeCosta, P.M.

Algal blooms have been documented along the west and east coasts of India. A review of bloom occurrences in Indian waters from 1908 to 2009 points out that a total of 101 cases have been reported. A comparison of the bloom cases reported before...

Bacterial community transcription patterns during a marine phytoplankton bloom.

Science.gov (United States)

Rinta-Kanto, Johanna M; Sun, Shulei; Sharma, Shalabh; Kiene, Ronald P; Moran, Mary Ann

2012-01-01

Bacterioplankton consume a large proportion of photosynthetically fixed carbon in the ocean and control its biogeochemical fate. We used an experimental metatranscriptomics approach to compare bacterial activities that route energy and nutrients during a phytoplankton bloom compared with non-bloom conditions. mRNAs were sequenced from duplicate bloom and control microcosms 1 day after a phytoplankton biomass peak, and transcript copies per litre of seawater were calculated using an internal mRNA standard. Transcriptome analysis revealed a potential novel mechanism for enhanced efficiency during carbon-limited growth, mediated through membrane-bound pyrophosphatases [V-type H(+)-translocating; hppA]; bloom bacterioplankton participated less in this metabolic energy scavenging than non-bloom bacterioplankton, with possible implications for differences in growth yields on organic substrates. Bloom bacterioplankton transcribed more copies of genes predicted to increase cell surface adhesiveness, mediated by changes in bacterial signalling molecules related to biofilm formation and motility; these may be important in microbial aggregate formation. Bloom bacterioplankton also transcribed more copies of genes for organic acid utilization, suggesting an increased importance of this compound class in the bioreactive organic matter released during phytoplankton blooms. Transcription patterns were surprisingly faithful within a taxon regardless of treatment, suggesting that phylogeny broadly predicts the ecological roles of bacterial groups across 'boom' and 'bust' environmental backgrounds. © 2011 Society for Applied Microbiology and Blackwell Publishing Ltd.

Molecular fossils of diatoms. Applications in petroleum geochemistry and palaeoenvironmental studies

Energy Technology Data Exchange (ETDEWEB)

Rampen, S.W.

2009-06-11

Diatoms are one of the major groups of algae which originated relatively recently and evolved in the Late Jurassic/Cretaceous. This thesis presents the results of a comprehensive study of diatom lipids in cultures and in the environment and their applications in the age determination of petroleum and in palaeoenvironmental studies. Diatom DNA sequences were analyzed in order to relate the phylogenetic positions of diatoms to the lipid chemotaxonomy. Forty four different sterols were identified in diatoms, with 24-methylcholesta-5,24(28)-dien-3-beta-ol being most common. 24-Methylcholesta-5,22E-dien-3-beta-ol, previously described as a diatom biomarker, was only the fifth most common sterol and absent in some major diatom groups. All identified sterols have been reported in other algae, but within the diatoms, some sterols and sterol compositions seem to be specific for specific phylogenetic clusters. Sterol compositions confirmed the separate phylogenetic position of the genus Attheya, as also indicated by molecular phylogeny and microscopy. 23-Methyl and 23,24-dimethyl sterols, often associated with dinoflagellate algae, were present in a substantial number of diatoms, suggesting that diatoms may also be a major source. Their phylogenetic position suggests that these diatoms originated from a single common ancestor which evolved in the late Jurassic. In addition to 23-methyl and 23,24-dimethyl sterols, the unusual sterol gorgosterol was found in two diatom cultures of the genus Delphineis. 24-Norsterols were found in the diatom species Thalassiosira aff. antarctica and in dinoflagellate cultures. The evolutionary history of dinoflagellates and diatoms explains the stepwise increases of 24-norsterane concentrations, diagenetic products of 24-norsterols, in petroleum. Long-chain 1,14-diols and 12-hydroxy methyl alkanoates were detected in Proboscia diatoms and may be used as indicators for high-nutrient conditions and upwelling. Their distributions varied between

Plankton bloom controlled by horizontal stirring

Science.gov (United States)

McKiver, W.; Neufeld, Z.; Scheuring, I.

2009-10-01

Here we show a simple mechanism in which changes in the rate of horizontal stirring by mesoscale ocean eddies can trigger or suppress plankton blooms and can lead to an abrupt change in the average plankton density. We consider a single species phytoplankton model with logistic growth, grazing and a spatially non-uniform carrying capacity. The local dynamics have multiple steady states for some values of the carrying capacity that can lead to localized blooms as fluid moves across the regions with different properties. We show that for this model even small changes in the ratio of biological timescales relative to the flow timescales can greatly enhance or reduce the global plankton productivity. Thus, this may be a possible mechanism in which changes in horizontal mixing can trigger plankton blooms or cause regime shifts in some oceanic regions. Comparison between the spatially distributed model and Lagrangian simulations considering temporal fluctuations along fluid trajectories, demonstrates that small scale transport processes also play an important role in the development of plankton blooms with a significant influence on global biomass.

Review--Interactions between diatoms and stainless steel: focus on biofouling and biocorrosion.

Science.gov (United States)

Landoulsi, J; Cooksey, K E; Dupres, V

2011-11-01

There is a considerable body of information regarding bacterially enhanced corrosion, however, this review focuses on diatoms (unicellular algae) whose contribution to biocorrosion is less well studied. The reasons why diatoms have been neglected in studies of biocorrosion in natural waters are discussed and the question whether diatoms should be considered as inert with respect of electrochemical processes is considered. A particular focus is given to the case of stainless steels (SS), which are widely used in variety of applications in natural waters. Basic information on the cell biology of diatoms is included in the review, particularly with respect to their ability to 'sense' and adhere to surfaces. Investigations at the nanoscale are reviewed as these studies provide information about the behavior of cells at interfaces. Recent advances include the use of atomic force microscopy (AFM), although only a few studies have been applied to diatoms. Regarding the electrochemical behavior of SS, the mechanisms by which diatoms influence the potential ennoblement process is discussed. Such studies reveal the association of diatoms, in addition to bacteria, with biocorrosion processes.

PENGARUH PEMBERIAN FeCl3 TERHADAP PERTUMBUHAN Chaetoceros calcitrans

Directory of Open Access Journals (Sweden)

Cahya Laila Oktaviana Putri

2009-04-01

Full Text Available Besi termasuk unsur yang esensial bagi makhluk hidup. Pada tumbuhan termasuk algae, besi berperan sebagai penyusun sitokrom dan klorofil. Selain itu, besi juga berperan dalam sistem enzim dan transfer elektron pada proses fotosintesis. Namun, belum diketahui konsentrasi yang tepat untuk pengunaannya oleh algae sehingga diperlukan penelitian yang dapat mengetahui konsentrasi pemakaian FeCl3 untuk perkembangan algae terutama untuk C. calcitrans. Tujuan dari penelitian ini adalah untuk mengetahui pengaruh pemberian FeCl3 terhadap kepadatan C. calcitran sehingga dapat mengetahui konsentrasi FeCl3 yang paling baik terhadap kepadatan C. calcitran. Serta untuk Mengetahui kepadatan C. calcitran berdasarkan hari. Penelitian ini diawali dengan menyetock C. calcitran hingga kepadatan 400 ribu sel/ml kemudian dilanjutkan dengan mengkultur C. calcitran pada toples yang telah dibuat sama parameternya kecuali pemberian FeCl3 sesuai dengan perlakuan. Untuk menganalisa pengaruh pemberian FeCl3 pada konsentrasi yang bebeda terhadap kepadatan C. calcitrans digunakan analisa sidik ragam (ANOVA dua langkah dengan bantuan software SPSS 12 dan dilakukan uji lanjut Tukey (Multiple Comparisons untuk melihat perlakuan yang berbeda dengan membandingkan berbagai hasil perlakuan. Pada konsentrasi FeCl3 0 mg/l berbeda nyata (P<0,05 sedangkan konsentrai FeCl3 0,02 mg/l, 0,2  mg/l, 2 mg/l berbeda signifikan terhadap kepadatan C. calcitrans sehingga hanya konsentrasi FeCl3 0 mg/l yang mempengaruhi kepadatan C. calcitrans. Ini disebabkan karena pemberian konsentrasi terlalu sedikit dan selisih konsentrasi yang kecil sehingga tidak mempengaruhi kepadatan C. calcitrans. Sedangkan untuk hari  diperoleh hari ke-1 dan ke-7 merupakan hari yang signifikan terhadap kepadatan C. calcitrans.  Kata Kunci : Chaetoceros calcitrans, FeCl3 dan kepadatan

Effect of mustard gas hydrolysis products on the development of water-bloom forming cyanobacteria

Directory of Open Access Journals (Sweden)

Zaytseva Tatyana

2017-03-01

Full Text Available Mustard gas and its hydrolysis products (MGHP belong to stable organochlorine compounds with high toxicity and broad spectrum of activity. Since the Second World War many aquatic ecosystems including the Baltic and the Adriatic Sea as well as the coastal waters of Japan, the USA, the UK, Australia have been contaminated with mustard gas due to the dumping of chemical weapon. Mustard gas and its hydrolysis products have a negative impact on aquatic life including microbiota. The aim of this work was to define the effect of MGHP on the growth, photosynthetic activity and synthesis of secondary metabolites by water-bloom forming cyanobacteria Trichormus variabilis, Aphanizomenon flos-aquae, Microcystis aeruginosa, Nodularia spumigena. Microbiological, chromatographic, spectrophotometric methods were used. The growth inhibition test with MGHP on cyanobacteria showed influence on the concentration EC50 within the range of 5.5 – 11.2 mg of organochlorine compounds (ОCC per liter. The synthesis of chlorophyll a was also decreased. It was shown that the chlorophyll synthesis was more sensitive to MGHP than the growth of cyanobacteria. NGHP induced enhanced excretion of exopolysaccharides. Low concentration of MGHP – 0.3 mg OCC/l - promoted the growth of toxigenic cyanobacterium Microcystis aeruginosa and increased microcystin-LR concentration in the environment. enhanced excretion of such metabolites as polysaccharides and cyanotoxins has a serious negative impact on water pollution due to MGHP.

Detection of surface algal blooms using the newly developed algorithm surface algal bloom index SABI)

OpenAIRE

Alawadi, Fahad

2010-01-01

Quantifying ocean colour properties has evolved over the past two decades from being able to merely detect their biological activity to the ability to estimate chlorophyll concentration using optical satellite sensors like MODIS and MERIS. The production of chlorophyll spatial distribution maps is a good indicator of plankton biomass (primary production) and is useful for the tracing of oceanographic currents, jets and blooms, including harmful algal blooms (HABs). Depending on the type of HA...

Isolation of diatom Navicula cryptocephala and characterization of ...

African Journals Online (AJOL)

sjce

synthesis to the storage of neutral lipids (Qiang et al.,. 2008). Diatoms were shown ... chemical analysis of the oil inside diatom oil droplets, a method for separating ... 120°C for 20 min. 0.1 mg.L. −1. Thiamine, 0.5 μg.L. −1. Biotin and 0.5 μg.L−1.

Marennine, Promising Blue Pigments from a Widespread Haslea Diatom Species Complex

Directory of Open Access Journals (Sweden)

Romain Gastineau

2014-05-01

Full Text Available In diatoms, the main photosynthetic pigments are chlorophylls a and c, fucoxanthin, diadinoxanthin and diatoxanthin. The marine pennate diatom Haslea ostrearia has long been known for producing, in addition to these generic pigments, a water-soluble blue pigment, marennine. This pigment, responsible for the greening of oysters in western France, presents different biological activities: allelopathic, antioxidant, antibacterial, antiviral, and growth-inhibiting. A method to extract and purify marennine has been developed, but its chemical structure could hitherto not be resolved. For decades, H. ostrearia was the only organism known to produce marennine, and can be found worldwide. Our knowledge about H. ostrearia-like diatom biodiversity has recently been extended with the discovery of several new species of blue diatoms, the recently described H. karadagensis, H. silbo sp. inedit. and H. provincialis sp. inedit. These blue diatoms produce different marennine-like pigments, which belong to the same chemical family and present similar biological activities. Aside from being a potential source of natural blue pigments, H. ostrearia-like diatoms thus present a commercial potential for aquaculture, cosmetics, food and health industries.

Diatom diet selectivity by early post-larval abalone Haliotis diversicolor supertexta under hatchery conditions

Science.gov (United States)

Zhang, Yuyu; Gao, Yahui; Liang, Junrong; Chen, Changping; Zhao, Donghai; Li, Xuesong; Li, Yang; Wu, Wenzhong

2010-11-01

Benthic diatoms constitute the primary diet of abalone during their early stages of development. To evaluate the dietary preferences of early post-larval abalone, Haliotis diversicolor supertexta, we analyzed the gut contents of post-larvae that settled on diatom films. We compared the abundance and species diversity of diatom assemblages in the gut to those of the epiphytic diatom assemblages on the attachment films, and identified 40 benthic diatom species in the gut contents of post-larvae 12 to 24 d after settlement. The most abundant taxa in the gut contents were Navicula spp., Amphora copulate, and Amphora coffeaeformis. Navicula spp. accounted for 64.0% of the cell density. In the attachment films, we identified 110 diatom species belonging to 38 genera. Pennate diatoms were the dominant members including the species Amphiprora alata, Cocconeis placentula var. euglypta, Cylindrotheca closterium, Navicula sp. 2, and A. coffeaeformis. Nano-diatoms (abalone seed. The difference of the composition and abundance of diatoms between in the guts and on the biofilms suggests that early post-larval grazing was selective. An early post-larval abalone preferred nano-diatoms and the genera Navicula and Amphora during the month after settlement.

Distribution and recurrence of phytoplankton blooms around South Georgia, Southern Ocean

Directory of Open Access Journals (Sweden)

I. Borrione

2013-01-01

Full Text Available South Georgia phytoplankton blooms are amongst the largest of the Southern Ocean and are associated with a rich ecosystem and strong atmospheric carbon drawdown. Both aspects depend on the intensity of blooms, but also on their regularity. Here we use data from 12 yr of SeaWiFS (Sea-viewing Wide Field-of-view Sensor ocean colour imagery and calculate the frequency of bloom occurrence (FBO to re-examine spatial and temporal bloom distributions. We find that upstream of the island and outside the borders of the Georgia Basin, blooms occurred in less than 4 out of the 12 yr (FBO < 4. In contrast, FBO was mostly greater than 8 downstream of the island, i.e., to the north and northwest, and in places equal to 12, indicating that blooms occurred every year. The typical bloom area, defined as the region where blooms occurred in at least 8 out of the 12 yr, covers the entire Georgia Basin and the northern shelf of the island. The time series of surface chlorophyll a (Chl a concentrations averaged over the typical bloom area shows that phytoplankton blooms occurred in every year between September 1997 and September 2010, and that Chl a values followed a clear seasonal cycle, with concentration peaks around December followed in many years by a second peak during late austral summer or early autumn, suggesting a bi-modal bloom pattern. The bloom regularity we describe here is in contrast with results of Park et al. (2010 who used a significantly different study area including regions that almost never exhibit bloom conditions.

Detection of surface algal blooms using the newly developed algorithm surface algal bloom index (SABI)

Science.gov (United States)

Alawadi, Fahad

2010-10-01

Quantifying ocean colour properties has evolved over the past two decades from being able to merely detect their biological activity to the ability to estimate chlorophyll concentration using optical satellite sensors like MODIS and MERIS. The production of chlorophyll spatial distribution maps is a good indicator of plankton biomass (primary production) and is useful for the tracing of oceanographic currents, jets and blooms, including harmful algal blooms (HABs). Depending on the type of HABs involved and the environmental conditions, if their concentration rises above a critical threshold, it can impact the flora and fauna of the aquatic habitat through the introduction of the so called "red tide" phenomenon. The estimation of chlorophyll concentration is derived from quantifying the spectral relationship between the blue and the green bands reflected from the water column. This spectral relationship is employed in the standard ocean colour chlorophyll-a (Chlor-a) product, but is incapable of detecting certain macro-algal species that float near to or at the water surface in the form of dense filaments or mats. The ability to accurately identify algal formations that sometimes appear as oil spill look-alikes in satellite imagery, contributes towards the reduction of false-positive incidents arising from oil spill monitoring operations. Such algal formations that occur in relatively high concentrations may experience, as in land vegetation, what is known as the "red-edge" effect. This phenomena occurs at the highest reflectance slope between the maximum absorption in the red due to the surrounding ocean water and the maximum reflectance in the infra-red due to the photosynthetic pigments present in the surface algae. A new algorithm termed the surface algal bloom index (SABI), has been proposed to delineate the spatial distributions of floating micro-algal species like for example cyanobacteria or exposed inter-tidal vegetation like seagrass. This algorithm was

FRET Response of a Modified Ribose Receptor Expressed in the Diatom Thalassiosira pseudonana

Energy Technology Data Exchange (ETDEWEB)

Miller, Hanna

2011-08-26

The ability to insert complex proteins into silica has many applications including biosensing. Previous research has demonstrated how to direct proteins to the biosilica of diatoms [1]. Here, we show that a complex fusion protein that includes an enzyme, a bacterial ribose periplasmic binding protein, flanked by fluorescent proteins constituting a FRET pair can remain functional in the frustules of living diatoms. A Sil3 tag is attached to the N-terminal end to localize the fusion protein to frustules of the diatom Thalassiosira pseudonana. When ribose was applied, a larger decrease in FRET response was seen in transformed cells than in untransformed cells. Multiple forms of the expression vector were tested to find the optimal system; specifically, a one-vector system was compared to a two-vector system and the gDNA version of the Sil3 localization tag was compared to the cDNA version. The optimal system was found to be a one-vector system with the genomic version of the Sil3 tag to direct the protein to the frustules. Localization of the enzyme to the frustules was further confirmed through cell fluorescence imaging.

Life-history stages of the jellyfish Aurelia aurita - towards a demographic understanding of jellyfish blooms

DEFF Research Database (Denmark)

Goldstein, Josephine

2017-01-01

Jellyfish blooms are conspicuous demographic events that have received increasing attention by the public and the scientific community over the last decades due to their negative impact on fisheries, tourism and other human industries. Several aspects of the complex life cycles of the jellyfish......, including frequent mass occurrence of A. aurita medusae in temperate Danish waters. The present novel data show for instance, that jellyfish blooms of A. aurita are strongly affected by food availability and corresponding shifts between asexually reproducing benthic polyps and sexually reproducing pelagic...... medusae, which might be highly representative for the majority of bloom-forming jellyfish species. Findings further indicate that seasonal shrinkage and subsequent disappearance of A. aurita medusae is rather driven by food limitation than by a trade-off between sexual reproduction and metabolic...

Acidification counteracts negative effects of warming on diatom silicification

KAUST Repository

Coello-Camba, Alexandra; Agusti, Susana

2016-01-01

Diatoms are a significant group contributing up to 40 % of annual primary production in the oceans. They have a special siliceous cell wall that, acting as a ballast, plays a key role in the sequestration of global carbon and silica. Diatoms dominate primary production in the Arctic Ocean, where global climate change is causing increases in water temperature and in the partial pressure of CO2 (pCO2). Here we show that as water temperature increases diatoms become stressed, grow to smaller sizes, and decrease their silicification rates. But at higher pCO2, as the pH of seawater decreases, silica incorporation rates are increased. In a future warmer Arctic ocean diatoms may have a competitive advantage under increased ocean acidification, as increased pCO2 counteracts the adverse effects of increasing temperature on silicification and buffers its consequences in the biogeochemical cycles of carbon and silica.

Acidification counteracts negative effects of warming on diatom silicification

KAUST Repository

Coello-Camba, Alexandra

2016-10-24

Diatoms are a significant group contributing up to 40 % of annual primary production in the oceans. They have a special siliceous cell wall that, acting as a ballast, plays a key role in the sequestration of global carbon and silica. Diatoms dominate primary production in the Arctic Ocean, where global climate change is causing increases in water temperature and in the partial pressure of CO2 (pCO2). Here we show that as water temperature increases diatoms become stressed, grow to smaller sizes, and decrease their silicification rates. But at higher pCO2, as the pH of seawater decreases, silica incorporation rates are increased. In a future warmer Arctic ocean diatoms may have a competitive advantage under increased ocean acidification, as increased pCO2 counteracts the adverse effects of increasing temperature on silicification and buffers its consequences in the biogeochemical cycles of carbon and silica.

Automated Diatom Analysis Applied to Traditional Light Microscopy: A Proof-of-Concept Study

Science.gov (United States)

Little, Z. H. L.; Bishop, I.; Spaulding, S. A.; Nelson, H.; Mahoney, C.

2017-12-01

Diatom identification and enumeration by high resolution light microscopy is required for many areas of research and water quality assessment. Such analyses, however, are both expertise and labor-intensive. These challenges motivate the need for an automated process to efficiently and accurately identify and enumerate diatoms. Improvements in particle analysis software have increased the likelihood that diatom enumeration can be automated. VisualSpreadsheet software provides a possible solution for automated particle analysis of high-resolution light microscope diatom images. We applied the software, independent of its complementary FlowCam hardware, to automated analysis of light microscope images containing diatoms. Through numerous trials, we arrived at threshold settings to correctly segment 67% of the total possible diatom valves and fragments from broad fields of view. (183 light microscope images were examined containing 255 diatom particles. Of the 255 diatom particles present, 216 diatoms valves and fragments of valves were processed, with 170 properly analyzed and focused upon by the software). Manual analysis of the images yielded 255 particles in 400 seconds, whereas the software yielded a total of 216 particles in 68 seconds, thus highlighting that the software has an approximate five-fold efficiency advantage in particle analysis time. As in past efforts, incomplete or incorrect recognition was found for images with multiple valves in contact or valves with little contrast. The software has potential to be an effective tool in assisting taxonomists with diatom enumeration by completing a large portion of analyses. Benefits and limitations of the approach are presented to allow for development of future work in image analysis and automated enumeration of traditional light microscope images containing diatoms.

A synthesis of post-glacial diatom records from Lake Baikal

Science.gov (United States)

Bradbury, J. Platt; Bezrukova, E.; Chernyaeva, G.; Colman, S.M.; Khursevich, G.; King, J.W.; Likoshway, Ye. V.

1994-01-01

The biostratigraphy of fossil diatoms contributes important chronologic, paleolimnologic, and paleoclimatic information from Lake Baikal in southeastern Siberia. Diatoms are the dominant and best preserved microfossils in the sediments, and distinctive assemblages and species provide inter-core correlations throughout the basin at millennial to centennial scales, in both high and low sedimentation-rate environments. Distributions of unique species, once dated by radiocarbon, allow diatoms to be used as dating tools for the Holocene history of the lake.Diatom, pollen, and organic geochemical records from site 305, at the foot of the Selenga Delta, provide a history of paleolimnologic and paleoclimatic changes from the late glacial (15 ka) through the Holocene. Before 14 ka diatoms were very rare, probably because excessive turbidity from glacial meltwater entering the lake impeded productivity. Between 14 and 12 ka, lake productivity increased, perhaps as strong winds promoted deep mixing and nutrient regeneration. Pollen evidence suggests a cold shrub — steppe landscape dominated the central Baikal depression at this time. As summer insolation increased, conifers replaced steppe taxa, but diatom productivity declined between 11 and 9 ka perhaps as a result of increased summer turbidity resulting from violent storm runoff entering the lake via short, steep drainages. After 8 ka, drier, but more continental climates prevailed, and the modern diatom flora of Lake Baikal came to prominence.On Academician Ridge, a site of slow sedimentation rates, Holocene diatom assemblages at the top of 10-m cores reappear at deeper levels suggesting that such cores record at least two previous interglacial (or interstadial?) periods. Nevertheless, distinctive species that developed prior to the last glacial period indicate that the dynamics of nutrient cycling in Baikal and the responsible regional climatic environments were not entirely analogous to Holocene conditions. During

A multiomics approach to study the microbiome response to phytoplankton blooms.

Science.gov (United States)

Song, Liyan

2017-06-01

Phytoplankton blooms are predictable features of marine and freshwater habitats. Despite a good knowledge base of the environmental factors controlling blooms, complex interactions between the bacterial and archaeal communities and phytoplankton bloom taxa are only now emerging. Here, the current research on bacterial community's structural and functional response to phytoplankton blooms is reviewed and discussed and further research is proposed. More attention should be paid on structure and function of autotrophic bacteria and archaea during phytoplankton blooms. A multiomics integration approach is needed to investigate bacterial and archaeal communities' diversity, metabolic diversity, and biogeochemical functions of microbial interactions during phytoplankton blooms.

Iron Availability Influences Silicon Isotope Fractionation in Two Southern Ocean Diatoms (Proboscia inermis and Eucampia antarctica and a Coastal Diatom (Thalassiosira pseudonana

Directory of Open Access Journals (Sweden)

Scott Meyerink

2017-07-01

Full Text Available The fractionation of silicon (Si isotopes was measured in two Southern Ocean diatoms (Proboscia inermis and Eucampia Antarctica and a coastal diatom (Thalassiosira pseudonana that were grown under varying iron (Fe concentrations. Varying Fe concentrations had no effect on the Si isotope enrichment factor (ε in T. pseudonana, whilst E. Antarctica and P. inermis exhibited significant variations in the value of ε between Fe-replete and Fe-limited conditions. Mean ε values in P. inermis and E. Antarctica decreased from (± 1SD −1.11 ± 0.15‰ and −1.42 ± 0.41 ‰ (respectively under Fe-replete conditions, to −1.38 ± 0.27 ‰ and −1.57 ± 0.5 ‰ (respectively under Fe-limiting conditions. These variations likely arise from adaptations in diatoms arising from the nutrient status of their environment. T. pseudonana is a coastal clone typically accustomed to low Si but high Fe conditions whereas E. Antarctica and P. inermis are typically accustomed to High Si, High nitrate low Fe conditions. Growth induced variations in silicic acid (Si(OH4 uptake arising from Fe-limitation is the likely mechanism leading to Si-isotope variability in E. Antarctica and P. inermis. The multiplicative effects of species diversity and resource limitation (e.g., Fe on Si-isotope fractionation in diatoms can potentially alter the Si-isotope composition of diatom opal in diatamaceous sediments and sea surface Si(OH4. This work highlights the need for further in vitro studies into intracellular mechanisms involved in Si(OH4 uptake, and the associated pathways for Si-isotope fractionation in diatoms.

Fluxes of diatoms in the Dona Paula Bay, west coast of India

Digital Repository Service at National Institute of Oceanography (India)

Garg, A.; Bhaskar, P.V.

of POC and diatom carbon was 251 and 0.39 mg C m sup(-2) day sup(-1), respectively. The diatom carbon accounted for 0.15% of the POC flux. Mass flux of diatoms showed significant negative correlation with the concentration of nitrate and phosphate...

Seasonal effects of cadmium accumulation in periphytic diatom communities of freshwater biofilms

International Nuclear Information System (INIS)

Thi Thuy Duong; Morin, Soizic; Herlory, Olivier; Feurtet-Mazel, Agnes; Coste, Michel; Boudou, Alain

2008-01-01

The relationships between diatom species and cadmium (Cd) accumulated in biofilms of the Riou-Mort River (SW, France) were studied in July 2004 and March 2005. Biofilms were sampled from artificial substrates immersed along a metallic pollution gradient during 20 days. Dynamics of diatom communities and cadmium accumulation were followed by collecting samples after 4, 7, 14 and 20 days of biofilm colonization. Cd accumulation in biofilms during experiment was significantly higher in Cd polluted station (Joanis) than in reference station (Firmi) for both seasons. Periphytic diatom composition varied between sites and seasons. At Firmi station, seasonal dynamics of diatom communities were stable with the dominance of Cyclotella meneghiniana and Melosira varians in July and Surirellabrebissonnii and Navicula gregaria in March. At Joanis station, diatom communities mainly responded to high levels of metal by a high proportion of small, adnate species. Positive correlations between Eolimna minima, Nitzschia palea, Encyonema minutum, Surirella angusta, and Gomphonema parvulum and cadmium accumulation were observed, indicating that these species are tolerant to high levels of cadmium. On the other hand, negative correlations of C. meneghiniana, N. gregaria, Navicula lanceolata, M. varians and Nitzschia dissipata with cadmium qualify them as sensitive diatom species. Periphytic diatom composition through the presence of specific species highlight metal tolerant indicator diatom groups which will be meaningful for biomonitoring pollution in natural aquatic systems

Seasonal effects of cadmium accumulation in periphytic diatom communities of freshwater biofilms

Energy Technology Data Exchange (ETDEWEB)

Thi Thuy Duong [Institute of Environmental Technology, Vietnamese Academy of Science and Technology, 18 Hoang Quoc Viet Road, Cau Giay, Hanoi (Viet Nam); Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France)], E-mail: duongthuy0712@yahoo.com; Morin, Soizic [Cemagref, UR REBX, 50 avenue de Verdun, F-33612 Cestas cedex (France); Herlory, Olivier [Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France); Feurtet-Mazel, Agnes [Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France)], E-mail: a.feurtet-mazel@epoc.u-bordeaux1.fr; Coste, Michel [Cemagref, UR REBX, 50 avenue de Verdun, F-33612 Cestas cedex (France); Boudou, Alain [Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France)

2008-10-20

The relationships between diatom species and cadmium (Cd) accumulated in biofilms of the Riou-Mort River (SW, France) were studied in July 2004 and March 2005. Biofilms were sampled from artificial substrates immersed along a metallic pollution gradient during 20 days. Dynamics of diatom communities and cadmium accumulation were followed by collecting samples after 4, 7, 14 and 20 days of biofilm colonization. Cd accumulation in biofilms during experiment was significantly higher in Cd polluted station (Joanis) than in reference station (Firmi) for both seasons. Periphytic diatom composition varied between sites and seasons. At Firmi station, seasonal dynamics of diatom communities were stable with the dominance of Cyclotella meneghiniana and Melosira varians in July and Surirellabrebissonnii and Navicula gregaria in March. At Joanis station, diatom communities mainly responded to high levels of metal by a high proportion of small, adnate species. Positive correlations between Eolimna minima, Nitzschia palea, Encyonema minutum, Surirella angusta, and Gomphonema parvulum and cadmium accumulation were observed, indicating that these species are tolerant to high levels of cadmium. On the other hand, negative correlations of C. meneghiniana, N. gregaria, Navicula lanceolata, M. varians and Nitzschia dissipata with cadmium qualify them as sensitive diatom species. Periphytic diatom composition through the presence of specific species highlight metal tolerant indicator diatom groups which will be meaningful for biomonitoring pollution in natural aquatic systems.

Colonization of diatom aggregates by the dinoflagellate Noctiluca scintillans

DEFF Research Database (Denmark)

Tiselius, P.; Kiørboe, Thomas

1998-01-01

coagulation of diatom cells and not by mucus feeding behavior of N. scintillans. N. scintillans can be positively buoyant, and estimates of encounter rates between N. scintillans and diatom aggregates during ascent demonstrates that this mechanism is sufficient to account for the observed colonization...

Margalef's mandala and phytoplankton bloom strategies

Science.gov (United States)

Wyatt, Timothy

2014-03-01

Margalef's mandala maps phytoplankton species into a phase space defined by turbulence (A) and nutrient concentrations (Ni); these are the hard axes. The permutations of high and low A and high and low Ni divide the space into four domains. Soft axes indicate some ecological dynamics. A main sequence shows the normal course of phytoplankton succession; the r-K axis of MacArthur and Wilson runs parallel to it. An alternative successional sequence leads to the low A-high Ni domain into which many red tide species are mapped. Astronomical and biological time are implicit. A mathematical transformation of the mandala (rotation) links it to the classical bloom models of Sverdrup (time) and Kierstead and Slobodkin (space). Both rarity and the propensity to form red tides are considered to be species characters, meaning that maximum population abundance can be a target of natural selection. Equally, both the unpredictable appearance of bloom species and their short-lived appearances may be species characters. There may be a correlation too between these features and long-lived dormant stages in the life-cycle; then the vegetative planktonic phase is the 'weak link' in the life-cycle. Red tides are thus due to species which have evolved suites of traits which result in specific demographic strategies.

Diatom feeding across trophic guilds in tidal flat nematodes, and the importance of diatom cell size

Science.gov (United States)

Moens, Tom; Vafeiadou, Anna-Maria; De Geyter, Ellen; Vanormelingen, Pieter; Sabbe, Koen; De Troch, Marleen

2014-09-01

We examine the capacity of nematodes from three feeding types (deposit feeder, epistrate feeder, predator) to utilize microphytobenthos (MPB), and assess whether diatom cell size and consumer body size are important drivers of their feeding. We analyzed natural stable isotope ratios of carbon and nitrogen in abundant nematode genera and a variety of carbon sources at an estuarine intertidal flat. All nematodes had δ13C indicating that MPB is their major carbon source. δ15N, however, demonstrated that only one deposit and one epistrate feeder genus obtained most of their carbon from direct grazing on MPB, whereas other deposit feeders and predators obtained at least part of their carbon by predation on MPB grazers. We then performed a microcosm experiment in which equal cell numbers of each of three differently sized strains of the pennate diatom Seminavis were offered as food to four, one and one genera of deposit feeders, epistrate feeders and predators, respectively. Previous studies have shown that all but the epistrate feeder ingest whole diatoms, whereas the epistrate feeder pierces cells and sucks out their contents. Most genera showed markedly higher carbon absorption from medium and large cells than from small ones. When considering the number of cells consumed, however, none of the nematodes which ingest whole cells exhibited a clear preference for any specific diatom size. The epistrate feeder was the smallest nematode taxon considered here, yet it showed a marked preference for large cells. These results highlight that the feeding mechanism is much more important than consumer size as a driver of particle size selection in nematodes grazing MPB.

Marine snow derived from abandoned larvacean houses: Sinking rates, particle content and mechanisms of aggregate formation

DEFF Research Database (Denmark)

Hansen, J.L.S.; Kiørboe, Thomas; Alldredge, A.L.

1996-01-01

The dynamics and formation mechanisms of marine snow aggregates from abandoned larvacean houses were examined by laboratory experiments and field sampling during a spring diatom bloom in a shallow fjord on the west coast of the USA. Intact aggregates were sampled both from sediment traps and dire......The dynamics and formation mechanisms of marine snow aggregates from abandoned larvacean houses were examined by laboratory experiments and field sampling during a spring diatom bloom in a shallow fjord on the west coast of the USA. Intact aggregates were sampled both from sediment traps...

Diatom paleoecology Pass Key core 37, Everglades National Park, Florida Bay

Science.gov (United States)

Pyle, Laura; Cooper, S.R.; Huvane, J.K.

1998-01-01

During the 20th century, there have been large-scale anthropogenic modifications to the South Florida ecosystem. The effects of these changes on Florida Bay and its biological communities are currently of political and scientific interest. This study is part of a larger effort to reconstruct the history of environmental changes in the bay, using paleoecological techniques. We are using diatom indicators preserved in Florida Bay sediments to infer long-term water quality, productivity, nutrient, and salinity changes. We are also obtaining information concerning the natural variability of the ecosystem. Diatoms are microscopic algae, the remains of which are generally well preserved in sediments, and their distributions are closely linked to water quality. Diatoms were extracted from a 70-cm sediment core collected from the Pass Key mudbank of Florida Bay by the U.S. Geological Survey. Between 300-500 diatom valves from each of 15 core samples were identified and counted. Estimates of absolute abundance, species richness, Shannon-Wiener diversity, and centric:pennate ratios were calculated for each sample that was counted. Information on the ecology of the diatom species is presented, and changes in diatom community composition are evaluated. Samples contained an average of four million diatom valves per gram of sediment. Major changes in the diatom community are evident down core. These include increases in the percent abundance of marine diatoms in the time period represented by the core, probably the result of increasing salinity at Pass Key. Benthic diatoms become less abundant in the top half of the core. This may be related to a number of factors including the die-off of sea grass beds or increased turbidity of the water column. Once the chronology of the Pass Key core 37 is established, these down-core changes can be related to historical events and compared with other indicators in the sedimentary record that are currently being investigated by U.S Geological

Diatom species abundance and morphologically-based dissolution proxies in coastal Southern Ocean assemblages

Science.gov (United States)

Warnock, Jonathan P.; Scherer, Reed P.

2015-07-01

Taphonomic processes alter diatom assemblages in sediments, thus potentially negatively impacting paleoclimate records at various rates across space, time, and taxa. However, quantitative taphonomic data is rarely included in diatom-based paleoenvironmental reconstructions and no objective standard exists for comparing diatom dissolution in sediments recovered from marine depositional settings, including the Southern Ocean's opal belt. Furthermore, identifying changes to diatom dissolution through time can provide insight into the efficiency of both upper water column nutrient recycling and the biological pump. This is significant in that reactive metal proxies (e.g. Al, Ti) in the sediments only account for post-depositional dissolution, not the water column where the majority of dissolution occurs. In order to assess the range of variability of responses to dissolution in a typical Southern Ocean diatom community and provide a quantitative guideline for assessing taphonomic variability in diatoms recovered from core material, a sediment trap sample was subjected to controlled, serial dissolution. By evaluating dissolution-induced changes to diatom species' relative abundance, three preservational categories of diatoms have been identified: gracile, intermediate, and robust. The relative abundances of these categories can be used to establish a preservation grade for diatom assemblages. However, changes to the relative abundances of diatom species in sediment samples may reflect taphonomic or ecological factors. In order to address this complication, relative abundance changes have been tied to dissolution-induced morphological change to the areolae of Fragilariopsis curta, a significant sea-ice indicator in Southern Ocean sediments. This correlation allows differentiation between gracile species loss to dissolution versus ecological factors or sediment winnowing. These results mirror a similar morphological dissolution index from a parallel study utilizing

Diatoms in Liyu Lake, Eastern Taiwan

Directory of Open Access Journals (Sweden)

Liang-Chi Wang

2010-09-01

Full Text Available This study described the diatoms appeared in the sediments of Liyu Lake, a lowland natural lake situated at Hualen, eastern Taiwan. A total of 50 species was found in the sediments of this eutrophic lake. In them, 8 species were reported for the first time in Taiwan. They are: Cymbella thienemannii, Navicula absoluta, Navicula bacillum, Frustulia rhomboides var. crassinervia, Gyrosigma procerum, Nitzschia paleacea Epithemia smithii and Eunotia subarcuatioides. The ultrastructures of each species were described on the basis of observations under a scanning electron microscope. The ecological implications of the occurrence of these diatom species in this lake were inferred.

Harmful Algal Blooms

Science.gov (United States)

Graham, Jennifer L.

2007-01-01

What are Harmful Algal Blooms (HABs)? Freshwater and marine harmful algal blooms (HABs) can occur anytime water use is impaired due to excessive accumulations of algae. HAB occurrence is affected by a complex set of physical, chemical, biological, hydrological, and meteorological conditions making it difficult to isolate specific causative environmental factors. Potential impairments include reduction in water quality, accumulation of malodorous scums in beach areas, algal production of toxins potent enough to poison both aquatic and terrestrial organisms, and algal production of taste-and-odor compounds that cause unpalatable drinking water and fish. HABs are a global problem, and toxic freshwater and (or) marine algae have been implicated in human and animal illness and death in over 45 countries worldwide and in at least 27 U.S. States (Yoo and others, 1995; Chorus and Bartram, 1999; Huisman and others, 2005).

The health of benthic diatom assemblages in lower stretch

Indian Academy of Sciences (India)

This study examines the ecological state of epilithic diatom assemblages along the lower stretch of Mandakini, a glacier-fed Himalayan river. The diatoms were sampled at four stations during winter and summer, only once in each season. Valve counts were obtained from Naphrax mounts prepared from each sample.

Diatomáceas epífitas em Galaxaura rugosa (J. Ellis & Solander J.V. Lamouroux (Rhodophyta no Arquipélago de Fernando de Noronha, PE, Nordeste do Brasil Epiphytic diatoms on Galaxaura rugosa (J. Ellis & Solander J.V. Lamouroux (Rhodophyta in Fernando de Noronha Archipelago, Pernambuco State, Northeast Brazil

Directory of Open Access Journals (Sweden)

Manoel Messias da Silva Costa

2009-09-01

Full Text Available Exemplares de Galaxaura rugosa (J. Ellis & Solander J.V. Lamouroux foram coletados nos meses de junho/2006 e junho/2007, em três localidades do Arquipélago de Fernando de Noronha (Atalaia, Porto e Cagarras, com o objetivo de identificar a flora das diatomáceas epífitas que habita o talo da alga. Foram identificados 52 táxons distribuídos nas classes: Coscinodiscophyceae (19%, Fragilariophyceae (21% e Bacillariophyceae (60% denotando uma dominância de indivíduos com simetria bilateral, os quais corresponderam a 81% da flora identificada. As seguintes espécies caracterizaram a estrutura florística das diatomáceas, pois foram encontradas em mais de 70% das amostras analisadas: Amphora sp., Biddulphia biddulphiana (J.E. Smith Boyer, Cocconeis scutellum Ehrenberg, Diploneis bombus Ehrenberg, Grammatophora marina (Lyngbye Kützing, Mastogloia binotata (Grunow Cleve, Navicula longa Grunow, Nitzschia sp., Psammodiscus nitidus (Gregory Round in Mann, Rhabdonema adriaticum Kützing, Trachyneis aspera (Ehrenberg Cleve e Tryblionella coarctata (Grunow Mann. A diversidade específica variou entre média à alta, com os menores valores correspondendo aos florescimentos de Amphora sp. (49,3%, Mastogloia binotata (42,1% e Nitzschia sp. (62,5%.Specimens of Galaxaura rugosa (J. Ellis & Solander J.V. Lamouroux were collected in June 2006 and June 2007 at three localities in Fernando de Noronha Archipelago (Atalaia, Porto and Cagarras, aiming to identify the epiphytic diatom flora that inhabits the algae thallus. A total of 52 taxa were identified, distributed in the classes Coscinodiscophyceae (19%, Fragilariophyceae (21% and Bacillariophyceae (60% with 81% dominance of individuals with pinnate symmetry. The following species characterized the floristic diatom structure being considered very frequent: Amphora sp., Biddulphia biddulphiana (J.E. Smith Boyer, Cocconeis scutellum Ehrenberg, Diploneis bombus Ehrenberg, Grammatophora marina (Lyngbye K�

The Blooming Anatomy Tool (BAT): A Discipline-Specific Rubric for Utilizing Bloom's Taxonomy in the Design and Evaluation of Assessments in the Anatomical Sciences

Science.gov (United States)

Thompson, Andrew R.; O'Loughlin, Valerie D.

2015-01-01

Bloom's taxonomy is a resource commonly used to assess the cognitive level associated with course assignments and examination questions. Although widely utilized in educational research, Bloom's taxonomy has received limited attention as an analytical tool in the anatomical sciences. Building on previous research, the Blooming Anatomy Tool (BAT)…

Diatoms dominate the eukaryotic metatranscriptome during spring in coastal 'dead zone' sediments.

Science.gov (United States)

Broman, Elias; Sachpazidou, Varvara; Dopson, Mark; Hylander, Samuel

2017-10-11

An important characteristic of marine sediments is the oxygen concentration that affects many central metabolic processes. There has been a widespread increase in hypoxia in coastal systems (referred to as 'dead zones') mainly caused by eutrophication. Hence, it is central to understand the metabolism and ecology of eukaryotic life in sediments during changing oxygen conditions. Therefore, we sampled coastal 'dead zone' Baltic Sea sediment during autumn and spring, and analysed the eukaryotic metatranscriptome from field samples and after incubation in the dark under oxic or anoxic conditions. Bacillariophyta (diatoms) dominated the eukaryotic metatranscriptome in spring and were also abundant during autumn. A large fraction of the diatom RNA reads was associated with the photosystems suggesting a constitutive expression in darkness. Microscope observation showed intact diatom cells and these would, if hatched, represent a significant part of the pelagic phytoplankton biomass. Oxygenation did not significantly change the relative proportion of diatoms nor resulted in any major shifts in metabolic 'signatures'. By contrast, diatoms rapidly responded when exposed to light suggesting that light is limiting diatom development in hypoxic sediments. Hence, it is suggested that diatoms in hypoxic sediments are on 'standby' to exploit the environment if they reach suitable habitats. © 2017 The Author(s).

Investigation of the hydrodynamic behavior of diatom aggregates using particle image velocimetry.

Science.gov (United States)

Xiao, Feng; Li, Xiaoyan; Lam, Kitming; Wang, Dongsheng

2012-01-01

The hydrodynamic behavior of diatom aggregates has a significant influence on the interactions and flocculation kinetics of algae. However, characterization of the hydrodynamics of diatoms and diatom aggregates in water is rather difficult. In this laboratory study, an advanced visualization technique in particle image velocimetry (PIV) was employed to investigate the hydrodynamic properties of settling diatom aggregates. The experiments were conducted in a settling column filled with a suspension of fluorescent polymeric beads as seed tracers. A laser light sheet was generated by the PIV setup to illuminate a thin vertical planar region in the settling column, while the motions of particles were recorded by a high speed charge-coupled device (CCD) camera. This technique was able to capture the trajectories of the tracers when a diatom aggregate settled through the tracer suspension. The PIV results indicated directly the curvilinear feature of the streamlines around diatom aggregates. The rectilinear collision model largely overestimated the collision areas of the settling particles. Algae aggregates appeared to be highly porous and fractal, which allowed streamlines to penetrate into the aggregate interior. The diatom aggregates have a fluid collection efficiency of 10%-40%. The permeable feature of aggregates can significantly enhance the collisions and flocculation between the aggregates and other small particles including algal cells in water.

Phytoplankton community structure in local water types at a coastal site in north-western Bay of Bengal.

Science.gov (United States)

Baliarsingh, S K; Srichandan, Suchismita; Lotliker, Aneesh A; Sahu, K C; Srinivasa Kumar, T

2016-07-01

A comprehensive analysis on seasonal distribution of phytoplankton community structure and their interaction with environmental variables was carried out in two local water types (type 1  30 m isobath) at a coastal site in north-western Bay of Bengal. Phytoplankton community was represented by 211 taxa (146 marine, 37 fresh, 2 brackish, 20 marine-fresh, and 6 marine-brackish-fresh) belonging to seven major groups including 45 potential bloom forming and 22 potential toxin producing species. The seasonal variability depicted enrichment of phytoplankton during pre-monsoon in both water types. Total phytoplankton abundance pattern observed with inter-annual shift during monsoon and post-monsoon period at both water types. In both water types, diatom predominance was observed in terms of species richness and abundance comprising of centric (82 sp.) and pennate (58 sp.) forms. Pennate diatoms, Thalassiothrix longissima and Skeletonema costatum preponderated in both the water types. The diatom abundance was higher in type 1 in comparison to type 2. In general, SiO4 found to fuel growth of the dominant phytoplankton group, diatom in both the water types despite comparative lower concentration of other macronutrients in type 2.

Byatt versus Bloom

DEFF Research Database (Denmark)

Børch, Marianne

2016-01-01

Antonia Byatt's Possession takes issue with Harold Bloom's famous claim that creation - including an author's creative reading of an intertext - entails a violent encounter. Byatt's book suggests a more positive Construction of the process by which tradition is transformed in transmission....

A simple digestion method with a Lefort aqua regia solution for diatom extraction.

Science.gov (United States)

Wang, Huipin; Liu, Yan; Zhao, Jian; Hu, Sunlin; Wang, Yuzhong; Liu, Chao; Zhang, Yanji

2015-01-01

Presence of diatoms in tissues has been considered as a significant sign of drowning. However, there are limitations in the present extraction methods. We developed a new digestion method using the Lefort aqua regia solution (3:1 nitric acid to hydrochloric acid) for diatom extraction and evaluated the digestive capability, diatom destruction, and diatoms' recovery of this new method. The kidney tissues from rabbit mixed with water rich in diatoms were treated by the Lefort aqua regia digestion method (n = 10) and the conventional acid digestion method (n = 10). The results showed that the digestive capability of Lefort aqua regia digestion method was superior to conventional acid digestion method (p 0.05). The Lefort aqua regia reagent is an improvement over the conventional acid digestion for recovery of diatoms from tissue samples. © 2014 American Academy of Forensic Sciences.

Aerial Images and Convolutional Neural Network for Cotton Bloom Detection.

Science.gov (United States)

Xu, Rui; Li, Changying; Paterson, Andrew H; Jiang, Yu; Sun, Shangpeng; Robertson, Jon S

2017-01-01

Monitoring flower development can provide useful information for production management, estimating yield and selecting specific genotypes of crops. The main goal of this study was to develop a methodology to detect and count cotton flowers, or blooms, using color images acquired by an unmanned aerial system. The aerial images were collected from two test fields in 4 days. A convolutional neural network (CNN) was designed and trained to detect cotton blooms in raw images, and their 3D locations were calculated using the dense point cloud constructed from the aerial images with the structure from motion method. The quality of the dense point cloud was analyzed and plots with poor quality were excluded from data analysis. A constrained clustering algorithm was developed to register the same bloom detected from different images based on the 3D location of the bloom. The accuracy and incompleteness of the dense point cloud were analyzed because they affected the accuracy of the 3D location of the blooms and thus the accuracy of the bloom registration result. The constrained clustering algorithm was validated using simulated data, showing good efficiency and accuracy. The bloom count from the proposed method was comparable with the number counted manually with an error of -4 to 3 blooms for the field with a single plant per plot. However, more plots were underestimated in the field with multiple plants per plot due to hidden blooms that were not captured by the aerial images. The proposed methodology provides a high-throughput method to continuously monitor the flowering progress of cotton.

Summer heatwaves promote blooms of harmful cyanobacteria

NARCIS (Netherlands)

K.D Joehnk; J. Huisman; J. Sharples; B.P. Sommeijer (Ben); P.M. Visser (Petra); J.M. Stroom

2008-01-01

htmlabstractDense surface blooms of toxic cyanobacteria in eutrophic lakes may lead to mass mortalities of fish and birds, and provide a serious health threat for cattle, pets, and humans. It has been argued that global warming may increase the incidence of harmful algal blooms. Here, we report on a

Summer heatwaves promote blooms of harmful cyanobacteria

NARCIS (Netherlands)

Jöhnk, K.D.; Huisman, J.; Sharples, J.; Sommeijer, B.; Visser, P.M.; Stroom, J.M.

2008-01-01

Dense surface blooms of toxic cyanobacteria in eutrophic lakes may lead to mass mortalities of fish and birds, and provide a serious health threat for cattle, pets, and humans. It has been argued that global warming may increase the incidence of harmful algal blooms. Here, we report on a lake

Deep-Learning-Based Approach for Prediction of Algal Blooms

Directory of Open Access Journals (Sweden)

Feng Zhang

2016-10-01

Full Text Available Algal blooms have recently become a critical global environmental concern which might put economic development and sustainability at risk. However, the accurate prediction of algal blooms remains a challenging scientific problem. In this study, a novel prediction approach for algal blooms based on deep learning is presented—a powerful tool to represent and predict highly dynamic and complex phenomena. The proposed approach constructs a five-layered model to extract detailed relationships between the density of phytoplankton cells and various environmental parameters. The algal blooms can be predicted by the phytoplankton density obtained from the output layer. A case study is conducted in coastal waters of East China using both our model and a traditional back-propagation neural network for comparison. The results show that the deep-learning-based model yields better generalization and greater accuracy in predicting algal blooms than a traditional shallow neural network does.

The effect of environmental parameters and cyanobacterial blooms on phytoplankton dynamics of a Portuguese temperate lake

DEFF Research Database (Denmark)

De Figueiredo, Daniela R.; P. S. Reboleira, Ana Sofia; Antunes, Sara C.

2006-01-01

The increasing occurrence of cyanobacterial blooms in freshwaters is of great concern due to the ability of many cyanobacteria to produce cyanotoxins. In the present work, the eutrophied Vela Lake (Central Portugal), used for recreational purposes and as a water source for agriculture, was monito...... for the phytoplanktonic assemblage during the study period was increased in about 7% achieving a total of 61.0%, indicating a correlation that may be due to the known competitive advantage and/or allelopathy of the bloom-forming cyanobacteria towards microalgae....

20th century fluctuations in the abundance of siliceous microorganisms preserved in the sediments of the Puyuhuapi Channel (44° S, Chile Fluctuaciones en la abundancia de microorganismos silíceos preservados en los sedimentos del canal Puyuhuapi (44° S, Chile, durante el siglo XX

Directory of Open Access Journals (Sweden)

LORENA REBOLLEDO

2005-09-01

Full Text Available We present a 100-year reconstruction of siliceous export production from sediments of the Puyuhuapi Channel (44° S, 70° W in the Chilean fjords. We use accumulation rates and concentrations of diatoms and silicoflagellates, organic carbon (Corg and biogenic opal (SiOPAL as proxies of export production, and fluctuations in the contribution of freshwater diatoms as proxies of rainfall in the hinterland and river runoff. Box core sediments collected at two sites within the Puyuhuapi Channel were analyzed: Station 35 (at the head of the fjord; 56 m water depth and Station 40 (in the middle of the Channel; 270 m water depth. Surface sedimentation rates were 0.75 cm yr-1 at Station 35 and 0.25 cm yr-1 at Station 40. SiOPAL content averaged ~ 4 % at both sites. Diatom accumulation rates as well as the contribution of freshwater diatoms were higher at the head of the fjord (1.59 10(10 valves m-2 yr-1 and 22 %, respectively than in its middle (1.08 10(10 valves m_2 yr_1 and 14 %, respectively. Diatom abundances were two orders of magnitude higher than silicoflagellate contribution at both sites. In general, diatoms typical of high nutrient environments characterize the Puyuhuapi Channel sediments: at both sites, spores of the genus Chaetoceros dominated the diatom assemblage (> 40 % of total diatoms; spores of Chaetoceros radicans/cinctus, Ch. constrictus/vanheurcki, Ch. debilis and Ch. diadema. Downcore analysis reveals an overall increase in the production of siliceous microorganisms from the late 19th century to the early 1980s, and then a decrease until the late-1990s. We associate a decrease in freshwater diatom contribution since the mid-1970s which we associate with a concomitant decline in rainfall in the Chilean fjords. We suggest that this decline is related to the global atmospheric and oceanic warming of the past ~ 25 yearsSe presenta una reconstrucción de 100 años de la productividad silícea exportada en sedimentos del canal Puyuhuapi

Diversity of the Marine Cyanobacterium Trichodesmium: Characterization of the Woods Hole Culture Collection and Quantification of Field Populations

Science.gov (United States)

2009-09-01

stations on all four cruises; Fig. 5-4 C), and Plec - tonema sp. (North Pacific MP09-19, North Atlantic EN361-1, 2, 3; Fig. 5-4 D). Calothrix sp. was found in...under a chlorophyll filter; (C) ELF-labeled heterotrophic bacteria (Sta. MP09-16, 11 Aug 03, puff); (D) ELF-labeled cyanobacterium Plec - tonema sp...epiphyte of the pelagic diatom Chaetoceros (Foster and Zehr, 2006). While Plec - tonema is known to fix N2 only in lowered oxygen tension (Rippka et al

Mechanisms of carbon dioxide acquisition and CO2 sensing in marine diatoms: a gateway to carbon metabolism.

Science.gov (United States)

Matsuda, Yusuke; Hopkinson, Brian M; Nakajima, Kensuke; Dupont, Christopher L; Tsuji, Yoshinori

2017-09-05

Diatoms are one of the most successful marine eukaryotic algal groups, responsible for up to 20% of the annual global CO 2 fixation. The evolution of a CO 2 -concentrating mechanism (CCM) allowed diatoms to overcome a number of serious constraints on photosynthesis in the marine environment, particularly low [CO 2 ] aq in seawater relative to concentrations required by the CO 2 fixing enzyme, ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO), which is partly due to the slow diffusion rate of CO 2 in water and a limited CO 2 formation rate from [Formula: see text] in seawater. Diatoms use two alternative strategies to take up dissolved inorganic carbon (DIC) from the environment: one primarily relies on the direct uptake of [Formula: see text] through plasma-membrane type solute carrier (SLC) 4 family [Formula: see text] transporters and the other is more reliant on passive diffusion of CO 2 formed by an external carbonic anhydrase (CA). Bicarbonate taken up into the cytoplasm is most likely then actively transported into the chloroplast stroma by SLC4-type transporters on the chloroplast membrane system. Bicarbonate in the stroma is converted into CO 2 only in close proximity to RubisCO preventing unnecessary CO 2 leakage. CAs play significant roles in mobilizing DIC as it is progressively moved towards the site of fixation. However, the evolutionary types and subcellular locations of CAs are not conserved between different diatoms, strongly suggesting that this DIC mobilization strategy likely evolved multiple times with different origins. By contrast, the recent discovery of the thylakoid luminal θ-CA indicates that the strategy to supply CO 2 to RubisCO in the pyrenoid may be very similar to that of green algae, and strongly suggests convergent coevolution in CCM function of the thylakoid lumen not only among diatoms but among eukaryotic algae in general. In this review, both experimental and corresponding theoretical models of the diatom CCMs are

Effects of fertilizers used in agricultural fields on algal blooms

Science.gov (United States)

Chakraborty, Subhendu; Tiwari, P. K.; Sasmal, S. K.; Misra, A. K.; Chattopadhyay, Joydev

2017-06-01

The increasing occurrence of algal blooms and their negative ecological impacts have led to intensified monitoring activities. This needs the proper identification of the most responsible factor/factors for the bloom formation. However, in natural systems, algal blooms result from a combination of factors and from observation it is difficult to identify the most important one. In the present paper, using a mathematical model we compare the effects of three human induced factors (fertilizer input in agricultural field, eutrophication due to other sources than fertilizers, and overfishing) on the bloom dynamics and DO level. By applying a sophisticated sensitivity analysis technique, we found that the increasing use of fertilizers in agricultural field causes more rapid algal growth and decreases DO level much faster than eutrophication from other sources and overfishing. We also look at the mechanisms how fertilizer input rate affects the algal bloom dynamics and DO level. The model can be helpful for the policy makers in determining the influential factors responsible for the bloom formation.

Diatoms in acid mine drainage and their role in the formation of iron-rich stromatolites

Energy Technology Data Exchange (ETDEWEB)

Brake, S.S.; Hasiotis, S.T.; Dannelly, H.K. [Indiana State University, Terre Haute, IN (United States)

2004-08-01

Adverse conditions in the acid mine drainage (AMD) system at the Green Valley mine, Indiana, limit diatom diversity to one species, Nitzschia tubicola. It is present in three distinct microbial consortia: Euglena mutabilis-dominated biofilm, diatom-dominated biofilm, and diatom-exclusive biofilm. E. mutabilis dominates the most extensive biofilm, with lesser numbers of N. tubicola, other eukaryotes, and bacteria. Diatom-dominated biofilm occurs as isolated patches containing N. tubicola with minor fungal hyphae, filamentous algae, E. mutabilis, and bacteria. Diatom-exclusive biofilm is rare, composed entirely of N. tubicola. Diatom distribution is influenced by seasonal and intraseasonal changes in water temperature and chemistry. Diatoms are absent in winter due to cool water temperatures. In summer, isolated patchy communities are present due to warmer water temperatures. In 2001, the diatom community expanded its distribution following a major rainfall that temporarily diluted the effluent, creating hospitable conditions for diatom growth. After several weeks when effluent returned to preexisting conditions, the diatom biofilm retreated to isolated patches, and E. mutabilis biofilm flourished. Iron-rich stromatolites underlie the biofilms and consist of distinct laminae, recording spatial and temporal oscillations in physicochemical conditions and microbial activity. The stromatolites are composed of thin, wavy laminae with partially decayed E. mutabilis biofilm, representing microbial activity and iron precipitation under normal AMD conditions. Alternating with the wavy layers are thicker, porous, spongelike laminae composed of iron precipitated on and incorporated into radiating colonies of diatoms. These layers indicate episodic changes in water chemistry, allowing diatoms to temporarily dominate the system.

Diatomic infrared gas-dynamic laser

International Nuclear Information System (INIS)

Mckenzie, R.L.

1971-01-01

A laser is provided which utilizes the infrared vibration rotation transitions of a diatomic gas such as carbon monoxide. The laser action is produced by an active diatomic gas such as carbon monoxide mixed with a vibrationally resonant pumping gas such as nitrogen. In addition, a noble gas such as argon may be employed as a third gas in the mixture. The gas mixture contains from 1 to 80 vol percent of the active gas based on the pumping gas, and the third gas, if used, can constitute up to 90 percent of the total gas volume. A number of significantly different wavelengths can be produced by the laser. A single laser may contain several optical resonators at different locations, so that the desired wave length can be selected at will

Bloom's Taxonomy: Improving Assessment and Teaching-Learning Process

Science.gov (United States)

Chandio, Muhammad Tufail; Pandhiani, Saima Murtaza; Iqbal, Rabia

2016-01-01

This research study critically analyzes the scope and contribution of Bloom's Taxonomy in both assessment and teaching-learning process. Bloom's Taxonomy consists of six stages, namely; remembering, understanding, applying, analyzing, evaluating and creating and moves from lower degree to the higher degree. The study applies Bloom's Taxonomy to…

Diatom Transcriptional and Physiological Responses to Changes in Iron Bioavailability across Ocean Provinces

Directory of Open Access Journals (Sweden)

Natalie R. Cohen

2017-11-01

Full Text Available Changes in iron (Fe bioavailability influence diatom physiology and community composition, and thus have a profound impact on primary productivity and ecosystem dynamics. Iron limitation of diatom growth rates has been demonstrated in both oceanic and coastal waters of the Northeast Pacific Ocean and is predicted to become more pervasive in future oceans. However, it is unclear how the strategies utilized by phytoplankton to cope with low Fe bioavailability and resupply differ across these ocean provinces. We investigated the response of diatom communities to variable Fe conditions through incubation experiments performed in the Fe mosaic of the California Upwelling Zone and along a natural Fe gradient in the Northeast Pacific Ocean. Through coupling gene expression of two dominant diatom taxa (Pseudo-nitzschia and Thalassiosira with biological rate process measurements, we provide an in-depth examination of the physiological and molecular responses associated with varying Fe status. Following Fe enrichment, oceanic diatoms showed distinct differential expression of gene products involved in nitrogen assimilation, photosynthetic carbon fixation, and vitamin production compared to diatoms from low-Fe coastal sites, possibly driven by the chronic nature of Fe stress at the oceanic site. Genes of interest involved in Fe and N metabolism additionally exhibited divergent expression patterns between the two diatom taxa investigated, demonstrating that diverse diatoms may invoke alternative strategies when dealing with identical changes in their environment. We report here several mechanisms used distinctly by coastal or oceanic diatom communities as well as numerous taxa-specific strategies for coping with Fe stress and rearranging nutrient metabolism following Fe enrichment.

Fossil diatoms imply common cometary origin of space-dust and the Polonnaruwa meteorite

Science.gov (United States)

Miyake, N.; Wallis, M. K.; Wickramasinghe, N. C.

2013-09-01

IDPs collected in 2001 at 40km altitude by cryosamplers studied via scanning electron microscopy and EDX were found to contain siliceous fibres and whiskers, some isolated but often embedded in a mineral matrix. The newly-arrived Polonnaruwa meteorite gives strong evidence for the hypothesis that they are fragments of diatoms agglomerating on solar system icy bodies. Diatom frustules and even whole diatom skeletons are identifiable within the meteorite. Specimens of a siliceous exoskeleton with multiple spines/whiskers have also been found, thought to be freshwater diatoms. As diatoms are dependent on a source of nitrogenous organics, the siliceous whiskers within IDPs would be an indicator of a photosynthesizing ecosystem, probably on a comet.

Cytoplasmic inheritance of parent-offspring cell structure in the clonal diatom Cyclotella meneghiniana.

Science.gov (United States)

Shirokawa, Yuka; Shimada, Masakazu

2016-11-16

In cytoplasmic inheritance, structural states of a parent cell could be transmitted to offspring cells via two mechanisms. The first is referred to as the hangover of parent structure, where the structure itself remains and faithfully transmits within offspring cells; the second is structural inheritance, wherein the parent structure functions as a template for development of new offspring structure. We estimated to what extent the parent structure affects the development of offspring structure by structural inheritance, using a clone of the diatom Cyclotella meneghiniana The cell has two siliceous valves (a cell wall part at both cell poles): one is inherited from the parent and the other is newly formed. We estimated cytoplasmic heritability by comparing valve traits (central fultoportulae (CTFP), striae, central area, and cell diameter) of parent and new offspring valves, using single-cell isolation and valve labelling. Parent-offspring valve trait regressions showed that all traits, except CTFP, were significantly correlated. We formulated a quantitative genetic model considering the diatom inheritance system and revealed short-term rapid evolution compared with other inheritance systems. Diatom structural inheritance will have evolved to enable clonal populations to rapidly acquire and maintain suitable structures for temporal changes in environments and life-cycle stages. © 2016 The Author(s).

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus

KAUST Repository

Mock, Thomas

2017-01-17

The Southern Ocean houses a diverse and productive community of organisms. Unicellular eukaryotic diatoms are the main primary producers in this environment, where photosynthesis is limited by low concentrations of dissolved iron and large seasonal fluctuations in light, temperature and the extent of sea ice. How diatoms have adapted to this extreme environment is largely unknown. Here we present insights into the genome evolution of a cold-adapted diatom from the Southern Ocean, Fragilariopsis cylindrus, based on a comparison with temperate diatoms. We find that approximately 24.7 per cent of the diploid F. cylindrus genome consists of genetic loci with alleles that are highly divergent (15.1 megabases of the total genome size of 61.1 megabases). These divergent alleles were differentially expressed across environmental conditions, including darkness, low iron, freezing, elevated temperature and increased CO2. Alleles with the largest ratio of non-synonymous to synonymous nucleotide substitutions also show the most pronounced condition-dependent expression, suggesting a correlation between diversifying selection and allelic differentiation. Divergent alleles may be involved in adaptation to environmental fluctuations in the Southern Ocean.

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus

KAUST Repository

Mock, Thomas; Otillar, Robert P.; Strauss, Jan; McMullan, Mark; Paajanen, Pirita; Schmutz, Jeremy; Salamov, Asaf; Sanges, Remo; Toseland, Andrew; Ward, Ben J.; Allen, Andrew E.; Dupont, Christopher L.; Frickenhaus, Stephan; Maumus, Florian; Veluchamy, Alaguraj; Wu, Taoyang; Barry, Kerrie W.; Falciatore, Angela; Ferrante, Maria I.; Fortunato, Antonio E.; Glö ckner, Gernot; Gruber, Ansgar; Hipkin, Rachel; Janech, Michael G.; Kroth, Peter G.; Leese, Florian; Lindquist, Erika A.; Lyon, Barbara R.; Martin, Joel; Mayer, Christoph; Parker, Micaela; Quesneville, Hadi; Raymond, James A.; Uhlig, Christiane; Valas, Ruben E.; Valentin, Klaus U.; Worden, Alexandra Z.; Armbrust, E. Virginia; Clark, Matthew D.; Bowler, Chris; Green, Beverley R.; Moulton, Vincent; Oosterhout, Cock van; Grigoriev, Igor V.

2017-01-01

The Southern Ocean houses a diverse and productive community of organisms. Unicellular eukaryotic diatoms are the main primary producers in this environment, where photosynthesis is limited by low concentrations of dissolved iron and large seasonal fluctuations in light, temperature and the extent of sea ice. How diatoms have adapted to this extreme environment is largely unknown. Here we present insights into the genome evolution of a cold-adapted diatom from the Southern Ocean, Fragilariopsis cylindrus, based on a comparison with temperate diatoms. We find that approximately 24.7 per cent of the diploid F. cylindrus genome consists of genetic loci with alleles that are highly divergent (15.1 megabases of the total genome size of 61.1 megabases). These divergent alleles were differentially expressed across environmental conditions, including darkness, low iron, freezing, elevated temperature and increased CO2. Alleles with the largest ratio of non-synonymous to synonymous nucleotide substitutions also show the most pronounced condition-dependent expression, suggesting a correlation between diversifying selection and allelic differentiation. Divergent alleles may be involved in adaptation to environmental fluctuations in the Southern Ocean.

Functionalized diatom silica microparticles for removal of mercury ions

International Nuclear Information System (INIS)

Yu Yang; Addai-Mensah, Jonas; Losic, Dusan

2012-01-01

Diatom silica microparticles were chemically modified with self-assembled monolayers of 3-mercaptopropyl-trimethoxysilane (MPTMS), 3-aminopropyl-trimethoxysilane (APTES) and n-(2-aminoethyl)-3-aminopropyl-trimethoxysilane (AEAPTMS), and their application for the adsorption of mercury ions (Hg(II)) is demonstrated. Fourier transform infrared spectroscopy and x-ray photoelectron spectroscopy analyses revealed that the functional groups (–SH or –NH 2 ) were successfully grafted onto the diatom silica surface. The kinetics and efficiency of Hg(II) adsorption were markedly improved by the chemical functionalization of diatom microparticles. The relationship among the type of functional groups, pH and adsorption efficiency of mercury ions was established. The Hg(II) adsorption reached equilibrium within 60 min with maximum adsorption capacities of 185.2, 131.7 and 169.5 mg g -1 for particles functionalized with MPTMS, APTES and AEAPTMS, respectively. The adsorption behavior followed a pseudo-second-order reaction model and Langmuirian isotherm. These results show that mercapto- or amino-functionalized diatom microparticles are promising natural, cost-effective and environmentally benign adsorbents suitable for the removal of mercury ions from aqueous solutions.

Epiphytic Diatoms along Environmental Gradients in Western European Shallow Lakes

NARCIS (Netherlands)

Blanco, Saul; Cejudo-Figueiras, Cristina; Alvarez-Blanco, Irene; van Donk, Ellen|info:eu-repo/dai/nl/069838593; Gross, Elisabeth M.; Hansson, Lars-Anders; Irvine, Kenneth; Jeppesen, Erik; Kairesalo, Timo; Moss, Brian; Noges, Tiina; Becares, Eloy

Diatom-based assays have been successfully associated worldwide with the tropic status of lakes. Several studies have demonstrated a correlation between epiphytic diatoms and nutrient load in shallow lakes and wetlands. We examine the relative importance of environmental factors in explaining the

Assessment of the phytochemical constituents and antioxidant activity of a bloom forming microalgae Euglena tuba

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Dipankar Chaudhuri

2014-01-01

Full Text Available BACKGROUND: Unstable generation of free radicals in the body are responsible for many degenerative diseases. A bloom forming algae Euglena tuba growing abundantly in the aquatic habitats of Cachar district in the state of Assam in North-East India was analysed for its phytochemical contents, antioxidant activity as well as free radical scavenging potentials. RESULTS: Based on the ability of the extract in ABTS•+ radical cation inhibition and Fe3+ reducing power, the obtained results revealed the prominent antioxidant activity of the algae, with high correlation coefficient of its TEAC values to the respective phenolic and flavonoid contents. The extract had shown its scavenging activity for different free radicals and 41.89 ± 0.41 µg/ml, 5.83 ± 0.07 µg/ml, 278.46 ± 15.02 µg/ml and 223.25 ± 4.19 µg/ml were determined as the IC50 values for hydroxyl, superoxide, nitric oxide and hypochlorous acid respectively, which are lower than that of the corresponding reference standards. The phytochemical analysis also revealed that the phenolics, flavonoids, alkaloids, tannins and carbohydrates are present in adequate amount in the extract which was confirmed by HPLC analysis. CONCLUSIONS: The results showed that 70% methanol extract of the algae possesses excellent antioxidant and free radical scavenging properties.

Suggestions for diatom-based monitoring in intermittent streams

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Falasco Elisa

2016-01-01

Full Text Available Over the last decades, river lentification processes and droughts have been dramatically spreading worldwide, due to global and local drastic changes due to human activities. Under this scenario, the evaluation of physical disturbance caused by intermittency and droughts has become more and more relevant. In this research, we compare samples collected in Mediterranean streams following both traditional and experimental approaches with the aim of understanding if diatom indices calculated from a new sampling strategy could provide additional information for the physical disturbance assessment. Moreover, we also evaluated the response of functional metrics. Our results demonstrated that even though an enhanced sampling method better reflects hydrological disturbance than the traditional one, diatom indices do not detect it. Conversely, functional traits proved to be important metrics for the hydrological disturbance assessment. In particular, benthic diatom chlorophyll a showed significantly lower values in sections more subject to droughts. With respect to ecological guilds, the motile taxa proved to be linked to depositional areas, which resulted important microhabitats (MHs to be explored in rivers affected by lentification. Including different MHs in the sampling process improves the information we can obtain from the analysis of the diatom community and presents important implications in documenting species distribution and autecology.

Predicting potentially toxigenic Pseudo-nitzschia blooms in the Chesapeake Bay

Science.gov (United States)

Anderson, Clarissa R.; Sapiano, Mathew R. P.; Prasad, M. Bala Krishna; Long, Wen; Tango, Peter J.; Brown, Christopher W.; Murtugudde, Raghu

2010-11-01

Harmful algal blooms are now recognized as a significant threat to the Chesapeake Bay as they can severely compromise the economic viability of important recreational and commercial fisheries in the largest estuary of the United States. This study describes the development of empirical models for the potentially domoic acid-producing Pseudo-nitzschia species complex present in the Bay, developed from a 22-year time series of cell abundance and concurrent measurements of hydrographic and chemical properties. Using a logistic Generalized Linear Model (GLM) approach, model parameters and performance were compared over a range of Pseudo-nitzschia bloom thresholds relevant to toxin production by different species. Small-threshold blooms (≥10 cells mL -1) are explained by time of year, location, and variability in surface values of phosphate, temperature, nitrate plus nitrite, and freshwater discharge. Medium- (100 cells mL -1) to large- threshold (1000 cells mL -1) blooms are further explained by salinity, silicic acid, dissolved organic carbon, and light attenuation (Secchi) depth. These predictors are similar to other models for Pseudo-nitzschia blooms on the west coast, suggesting commonalities across ecosystems. Hindcasts of bloom probabilities at a 19% bloom prediction point yield a Heidke Skill Score of ~53%, a Probability of Detection ˜ 75%, a False Alarm Ratio of ˜ 52%, and a Probability of False Detection ˜9%. The implication of possible future changes in Baywide nutrient stoichiometry on Pseudo-nitzschia blooms is discussed.

Enhanced adsorption of trivalent arsenic from water by functionalized diatom silica shells.

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Jianying Zhang

Full Text Available The potential of porous diatom silica shells as a naturally abundant low-cost sorbent for the removal of arsenic in aqueous solutions was investigated in a batch study. The objective of this work was to chemically modify the silica shells of a diatom Melosira sp. with bifunctional (thiol and amino groups to effectively remove arsenic in its toxic As(III form (arsenite predominant in the aquatic environment. Sorption experiments with this novel sorbent were conducted under varying conditions of pH, time, dosage, and As(III concentration. A maximum adsorption capacity of 10.99 mg g-1 was achieved within 26 h for a solution containing 12 mg L-1 As(III at pH 4 and sorbent dosage of 2 g L-1. The functionalized diatom silica shells had a surface morphological change which was accompanied by increased pore size at the expense of reduced specific surface area and total pore volume. As(III adsorption was best fitted with the Langmuir-Freundlich model, and the adsorption kinetic data using pore surface diffusion model showed that both the external (film and internal (intraparticle diffusion can be rate-determining for As(III adsorption. Fourier transform infrared spectroscopy (FTIR indicated that the thiol and amino groups potentially responsible for As(III adsorption were grafted on the surface of diatom silica shells. X-ray photoelectron spectroscopy (XPS further verified that this unique sorbent proceeded via a chemisorption mechanism through the exchange between oxygen-containing groups of neutral As(III and thiol groups, and through the surface complexation between As(III and protonated nitrogen and hydroxyl groups. Results indicate that this functionalized bioadsorbent with a high As(III adsorption capacity holds promise for the treatment of As(III containing wastewater.

A major seasonal phytoplankton bloom in the Madagascar Basin

Science.gov (United States)

Longhurst, Alan

2001-11-01

A hitherto-unnoticed phytoplankton bloom, of dimension 3000×1500 km, occupies the Madagascar Basin in late austral summer, being a prominent feature in SeaWiFS images. A first-order interpretation of the bloom mechanism invokes the seasonal deepening of the mixed layer within a strong mesoscale eddy-field and the consequent entrainment of nutrients into the photic zone. Features of the bloom correspond closely and appropriately with features of the eddy-field as observed by TOPEX-POSEIDON sea level anomalies. The bloom failed to develop in 1998, the second year of a two-year ENSO episode, when anomalously weak Southeast Trades will have failed to deepen the mixed layer as in other years.

Cenozoic planktonic marine diatom diversity and correlation to climate change.

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David Lazarus

Full Text Available Marine planktonic diatoms export carbon to the deep ocean, playing a key role in the global carbon cycle. Although commonly thought to have diversified over the Cenozoic as global oceans cooled, only two conflicting quantitative reconstructions exist, both from the Neptune deep-sea microfossil occurrences database. Total diversity shows Cenozoic increase but is sample size biased; conventional subsampling shows little net change. We calculate diversity from a separately compiled new diatom species range catalog, and recalculate Neptune subsampled-in-bin diversity using new methods to correct for increasing Cenozoic geographic endemism and decreasing Cenozoic evenness. We find coherent, substantial Cenozoic diversification in both datasets. Many living cold water species, including species important for export productivity, originate only in the latest Miocene or younger. We make a first quantitative comparison of diatom diversity to the global Cenozoic benthic ∂(18O (climate and carbon cycle records (∂(13C, and 20-0 Ma pCO2. Warmer climates are strongly correlated with lower diatom diversity (raw: rho = .92, p.9, detrended r>.6, all p<.001, but only weakly over the earlier Cenozoic, suggesting increasingly strong linkage of diatom and climate evolution in the Neogene. Our results suggest that many living marine planktonic diatom species may be at risk of extinction in future warm oceans, with an unknown but potentially substantial negative impact on the ocean biologic pump and oceanic carbon sequestration. We cannot however extrapolate our my-scale correlations with generic climate proxies to anthropogenic time-scales of warming without additional species-specific information on proximate ecologic controls.

Resonant inelastic collisions of electrons with diatomic molecules

International Nuclear Information System (INIS)

Houfek, Karel

2012-01-01

In this contribution we give a review of applications of the nonlocal resonance theory which has been successfully used for treating the nuclear dynamics of low-energy electron collisions with diatomic molecules over several decades. We give examples and brief explanations of various structures observed in the cross sections of vibrational excitation and dissociative electron attachment to diatomic molecules such as threshold peaks, boomerang oscillations below the dissociative attachment threshold, or outer-well resonances.

Resonant inelastic collisions of electrons with diatomic molecules

Energy Technology Data Exchange (ETDEWEB)

Houfek, Karel, E-mail: karel.houfek@gmail.com [Institute of Theoretical Physics, Faculty of Mathematics and Physics, Charles University, V Holesovickach 2, 180 00 Prague 8 (Czech Republic)

2012-05-15

In this contribution we give a review of applications of the nonlocal resonance theory which has been successfully used for treating the nuclear dynamics of low-energy electron collisions with diatomic molecules over several decades. We give examples and brief explanations of various structures observed in the cross sections of vibrational excitation and dissociative electron attachment to diatomic molecules such as threshold peaks, boomerang oscillations below the dissociative attachment threshold, or outer-well resonances.

Heterosigma bloom and associated fish kill

Science.gov (United States)

Hershberger, P.K.; Rensel, J.E.; Postel, J.R.; Taub, F.B.

1997-01-01

A bloom of the harmful marine phytoplankton, Heterosigma carterae occurred in upper Case Inlet, south Puget Sound, Washington in late September, 1994, correlating with the presence of at least 35 dead salmon. This marks the first time that this alga has been closely correlated with a wild fish kill; in the past it was thought to be associated with kills of penned fish at fish farms only. We were informed of the presence of a possible harmful algal bloom and dead salinois Ilear the town of Allyn on 27 September and a team was formed to investigate. We arrived at the Allyn waterfront at 17:30 hours the same day. Prior to our arrival, state agency personnel walked approximatcly two miles of shoreline from the powerlines north of the dock, to the mouth of Sherwood Creek and conducted the only official count of dead fish present along the shore consisting of 12 coho salmon (Oncorhynchus kisutch), 11 chum salmon (Oncorhynchus keta), 12 chinook salmon (Oncorhynchus tschawytscha), one flat fish, and one sculpin on the morning of 9/27. Since previous harmful blooms of Heterosigma have resultedin the majority of net penreared salmon sinking to the bottom of pens, and only approximately two miles of shoreline were sampled, it is suspected that many more exposed fish may have succumbed than were counted. Witnesses who explored the east side of the bay reported seeing many dead salmon there as well, but no counts were made. State agency personnel who observed the fish kill reported seeing “dying fish coming to the beach, gulping at the surface, trying to get out of the water” Scavengers were seen consuming the salmon carcasses; these included two harbor seals, a house cat, and Hymenopteran insects. None suffered any noticeable acute ill effects. Although precise cause of death has not been ascertained, visual inspection of the reproductive organs from a deceased male chum salmon found on the shore at Allyn confirmed that the fish was not yet reproductively mature and

The Role of Phytoplankton Dynamics in the Seasonal and Interannual Variability of Carbon in the Subpolar North Atlantic - a Modeling Study

Science.gov (United States)

Signorini, Sergio; Hakkinen, Sirpa; Gudmundsson, K.; Olsen, A.; Omar, A. M.; Olafsson, J.; Reverdin, G.; Henson, S. A.; McClain, C. R.; Worthen, D. L.

2014-01-01

We developed an ecosystem/biogeochemical model system, which includes multiple phytoplankton functional groups and carbon cycle dynamics, and applied it to investigate physical-biological interactions in Icelandic waters. Satellite and in situ data were used to evaluate the model. Surface seasonal cycle amplitudes and biases of key parameters (DIC, TA, pCO2, air-sea CO2 flux, and nutrients) are significantly improved when compared to surface observations by prescribing deep water values and trends, based on available data. The seasonality of the coccolithophore and "other phytoplankton" (diatoms and dinoflagellates) blooms is in general agreement with satellite ocean color products. Nutrient supply, biomass and calcite concentrations are modulated by light and mixed layer depth seasonal cycles. Diatoms are the most abundant phytoplankton, with a large bloom in early spring and a secondary bloom in fall. The diatom bloom is followed by blooms of dinoflagellates and coccolithophores. The effect of biological changes on the seasonal variability of the surface ocean pCO2 is nearly twice the temperature effect, in agreement with previous studies. The inclusion of multiple phytoplankton functional groups in the model played a major role in the accurate representation of CO2 uptake by biology. For instance, at the peak of the bloom, the exclusion of coccolithophores causes an increase in alkalinity of up to 4 µmol kg(sup -1) with a corresponding increase in DIC of up to 16 µmol kg(sup -1). During the peak of the bloom in summer, the net effect of the absence of the coccolithophores bloom is an increase in pCO2 of more than 20 µatm and a reduction of atmospheric CO2 uptake of more than 6 mmolm(sup -2) d(sup -1). On average, the impact of coccolithophores is an increase of air-sea CO2 flux of about 27 %. Considering the areal extent of the bloom from satellite images within the Irminger and Icelandic Basins, this reduction translates into an annual mean of nearly 1500

Spectral radiation dependent photoprotective mechanism in the diatom Pseudo-nitzschia multistriata.

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Christophe Brunet

Full Text Available Phytoplankton, such as diatoms, experience great variations of photon flux density (PFD and light spectrum along the marine water column. Diatoms have developed some rapidly-regulated photoprotective mechanisms, such as the xanthophyll cycle activation (XC and the non-photochemical chlorophyll fluorescence quenching (NPQ, to protect themselves from photooxidative damages caused by excess PFD. In this study, we investigate the role of blue fluence rate in combination with red radiation in shaping photoacclimative and protective responses in the coastal diatom Pseudo-nitzschia multistriata. This diatom was acclimated to four spectral light conditions (blue, red, blue-red, blue-red-green, each of them provided with low and high PFD. Our results reveal that the increase in the XC pool size and the amplitude of NPQ is determined by the blue fluence rate experienced by cells, while cells require sensing red radiation to allow the development of these processes. Variations in the light spectrum and in the blue versus red radiation modulate either the photoprotective capacity, such as the activation of the diadinoxanthin-diatoxanthin xanthophyll cycle, the diadinoxanthin de-epoxidation rate and the capacity of non-photochemical quenching, or the pigment composition of this diatom. We propose that spectral composition of light has a key role on the ability of diatoms to finely balance light harvesting and photoprotective capacity.

Polyp Removal of a Bloom Forming Jellyfish, Aurelia coerulea, in Korean Waters and Its Value Evaluation

Science.gov (United States)

Yoon, Wonduk; Chae, Jinho; Koh, Byoung-Seol; Han, Changhoon

2018-04-01

Aurelia coerulea is a bloom forming jellyfish that first appeared before 1980 in the western and southern Korean seas and which has been blamed for huge economical losses in all fields of marine activities. As a preventive measure to reduce economical losses, polyp removal was undertaken at Lake Shihwa, Lake Saemangeum, and Masan Bay, Korea. In the course of efforts during 2 years to remove polyps, polyps were surveyed, quantified, and removed. In these areas, the initial total polyp abundance was 5.04 × 109 and 46.25% of them were removed; Lake Shihwa the highest rates of removal and Lake Saemangeum the lowest. These efforts to remove polyps prevented the appearance of 1.20 × 109 medusae, corresponding to 78.28 × 106 kg. The cost of polyp removal was evaluated and compared with that of medusae removal. The ratio between the cost of polyp removal and that of medusae removal ranged between 0.78-3.14%, indicating large cost savings for polyp removal undertakings. However, the effect of polyp removal varied from positive to none, and we assumed that the cleared surface for polyp removal, quantity of removed polyp, and existence of polyps' hotspots in neighboring areas were the causes of the non-effectiveness of polyp removal undertakings.

Mitigating Harmful Cyanobacterial Blooms in a Human- and Climatically-Impacted World

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Hans W. Paerl

2014-12-01

Full Text Available Bloom-forming harmful cyanobacteria (CyanoHABs are harmful from environmental, ecological and human health perspectives by outcompeting beneficial phytoplankton, creating low oxygen conditions (hypoxia, anoxia, and by producing cyanotoxins. Cyanobacterial genera exhibit optimal growth rates and bloom potentials at relatively high water temperatures; hence, global warming plays a key role in their expansion and persistence. CyanoHABs are regulated by synergistic effects of nutrient (nitrogen:N and phosphorus:P supplies, light, temperature, vertical stratification, water residence times, and biotic interactions. In most instances, nutrient control strategies should focus on reducing both N and P inputs. Strategies based on physical, chemical (nutrient and biological manipulations can be effective in reducing CyanoHABs; however, these strategies are largely confined to relatively small systems, and some are prone to ecological and environmental drawbacks, including enhancing release of cyanotoxins, disruption of planktonic and benthic communities and fisheries habitat. All strategies should consider and be adaptive to climatic variability and change in order to be effective for long-term control of CyanoHABs. Rising temperatures and greater hydrologic variability will increase growth rates and alter critical nutrient thresholds for CyanoHAB development; thus, nutrient reductions for bloom control may need to be more aggressively pursued in response to climatic changes globally.

Diatomic Metasurface for Vectorial Holography.

Science.gov (United States)

Deng, Zi-Lan; Deng, Junhong; Zhuang, Xin; Wang, Shuai; Li, Kingfai; Wang, Yao; Chi, Yihui; Ye, Xuan; Xu, Jian; Wang, Guo Ping; Zhao, Rongkuo; Wang, Xiaolei; Cao, Yaoyu; Cheng, Xing; Li, Guixin; Li, Xiangping

2018-05-09

The emerging metasurfaces with the exceptional capability of manipulating an arbitrary wavefront have revived the holography with unprecedented prospects. However, most of the reported metaholograms suffer from limited polarization controls for a restrained bandwidth in addition to their complicated meta-atom designs with spatially variant dimensions. Here, we demonstrate a new concept of vectorial holography based on diatomic metasurfaces consisting of metamolecules formed by two orthogonal meta-atoms. On the basis of a simply linear relationship between phase and polarization modulations with displacements and orientations of identical meta-atoms, active diffraction of multiple polarization states and reconstruction of holographic images are simultaneously achieved, which is robust against both incident angles and wavelengths. Leveraging this appealing feature, broadband vectorial holographic images with spatially varying polarization states and dual-way polarization switching functionalities have been demonstrated, suggesting a new route to achromatic diffractive elements, polarization optics, and ultrasecure anticounterfeiting.

The application and testing of diatom-based indices of stream water ...

African Journals Online (AJOL)

The application and testing of diatom-based indices of stream water quality in Chinhoyi Town, Zimbabwe. ... PROMOTING ACCESS TO AFRICAN RESEARCH ... test the applicability of foreign diatom-based water quality assessment indices to ...

The effects of phosphorus limitation on carbon metabolism in diatoms.

Science.gov (United States)

Brembu, Tore; Mühlroth, Alice; Alipanah, Leila; Bones, Atle M

2017-09-05

Phosphorus is an essential element for life, serving as an integral component of nucleic acids, lipids and a diverse range of other metabolites. Concentrations of bioavailable phosphorus are low in many aquatic environments. Microalgae, including diatoms, apply physiological and molecular strategies such as phosphorus scavenging or recycling as well as adjusting cell growth in order to adapt to limiting phosphorus concentrations. Such strategies also involve adjustments of the carbon metabolism. Here, we review the effect of phosphorus limitation on carbon metabolism in diatoms. Two transcriptome studies are analysed in detail, supplemented by other transcriptome, proteome and metabolite data, to gain an overview of different pathways and their responses. Phosphorus, nitrogen and silicon limitation responses are compared, and similarities and differences discussed. We use the current knowledge to propose a suggestive model for the carbon flow in phosphorus-replete and phosphorus-limited diatom cells.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Authors.

Diatom species composition in the Raška river (Southwestern Serbia

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Vidaković Danijela P.

2015-01-01

Full Text Available The paper presents data on the composition of epilithic diatoms in the Raška River. Samples were collected by scraping stone surfaces with a brush from 5 localities along the Raška River in April, June, August and November 2011 and March and May 2012. Diatom frustules were cleaned using cold acid method, and mounted on permanent slides. An investigation of the Raška River resulted in description of 106 diatom taxa. The most species rich genera are Navicula (10, Gomphonema (10 and Nitzschia (9, while other genera are presented with one or more species. Detailed floristic analysis of the benthic diatom flora in this river has not been conducted before. Therefore, this paper provides a groundwork for future researches. [Projekat Ministarstva nauke Republike Srbije, br. TR 037009

Eddy-driven stratification initiates North Atlantic spring phytoplankton blooms.

Science.gov (United States)

Mahadevan, Amala; D'Asaro, Eric; Lee, Craig; Perry, Mary Jane

2012-07-06

Springtime phytoplankton blooms photosynthetically fix carbon and export it from the surface ocean at globally important rates. These blooms are triggered by increased light exposure of the phytoplankton due to both seasonal light increase and the development of a near-surface vertical density gradient (stratification) that inhibits vertical mixing of the phytoplankton. Classically and in current climate models, that stratification is ascribed to a springtime warming of the sea surface. Here, using observations from the subpolar North Atlantic and a three-dimensional biophysical model, we show that the initial stratification and resulting bloom are instead caused by eddy-driven slumping of the basin-scale north-south density gradient, resulting in a patchy bloom beginning 20 to 30 days earlier than would occur by warming.

Comunidades microplanctônicas no Oceano Atlântico Sul Ocidental: biomassa e distribuição em novembro de 1992 Microplankton communities in the Southwestern Atlantic Ocean: biomass and distribution in November/1992

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Luciano F. Fernandes

1999-01-01

.a/l. Adjacent waters showed low biomass indicating low productivity, with similar average values for Antarctic Water (0.18 J.1g/l and 8ubtropical Water (0.27 J.1g11, where a bloom of Trichodesmium erythraeum was detected. 8ubantarctic waters over the oceanic province around the Patagonian shelf represented a notable exception, with peaks in phytoplankton biomass (up to 2.46 J.1g Chl.a/l. Those areas of enhanced biomass were diatom-dominated; the Prymnesiophyceae Phaeocystis was abundant in some stations. Both fronts presented similar values of chlorophyll-a, indicating that environments with distinctive characteristics could support blooms of the same magnitude. Weakly silicified diatoms (Hemiaulus, Leptocylindrus, Thalassiosira dominated to the north of the BMCZ, while heavily silicified species (Asteromphalus, Chaetoceros aff.neglectus, Fragillariopsis kerguelensis, Proboscia, Pseudonitzschia sp., Rhizosolenia formed the buIk of phytoplankton at the PF, reflecting the different chemical characteristics of the water masses. The diatoms occurring in the PF appear to be recurrent and widely distributed along different longitudes over the Antarctic Circumpolar Current. Ciliates and heterotrophic dinoflagellates were dominant at 8ubtropical Water and to the north ofBMCZ, and seemed to respond quickly to the increasing phytoplankton biomass.

Effects of CO2 on particle size distribution and phytoplankton abundance during a mesocosm bloom experiment (PeECE II

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M. Schartau

2008-04-01

Full Text Available The influence of seawater carbon dioxide (CO2 concentration on the size distribution of suspended particles (2–60 μm and on phytoplankton abundance was investigated during a mesocosm experiment at the large scale facility (LFS in Bergen, Norway, in the frame of the Pelagic Ecosystem CO2 Enrichment study (PeECE II. In nine outdoor enclosures the partial pressure of CO2 in seawater was modified by an aeration system to simulate past (~190 μatm CO2, present (~370 μatm CO2 and future (~700 μatm CO2 CO2 conditions in triplicates. Due to the initial addition of inorganic nutrients, phytoplankton blooms developed in all mesocosms and were monitored over a period of 19 days. Seawater samples were collected daily for analysing the abundance of suspended particles and phytoplankton with the Coulter Counter and with Flow Cytometry, respectively. During the bloom period, the abundance of small particles (2 levels. At that time, a direct relationship between the total-surface-to-total-volume ratio of suspended particles and DIC concentration was determined for all mesocosms. Significant changes with respect to the CO2 treatment were also observed in the phytoplankton community structure. While some populations such as diatoms seemed to be insensitive to the CO2 treatment, others like Micromonas spp. increased with CO2, or showed maximum abundance at present day CO2 (i.e. Emiliania huxleyi. The strongest response to CO2 was observed in the abundance of small autotrophic nano-plankton that strongly increased during the bloom in the past CO2 mesocosms. Together, changes in particle size distribution and phytoplankton community indicate a complex interplay between the ability of the cells to physiologically respond to changes in CO2 and size selection. Size of cells is of general importance for a variety of processes in marine systems such as diffusion-limited uptake of substrates, resource allocation, predator-prey interaction, and gravitational settling

Using biodiversity of diatoms to identify hydrological connectivity in the hillslope-riparian zone-stream system

Science.gov (United States)

Wetzel, C. E.; Martínez-Carreras, N.; Ector, L.; Hlubikova, D.; Frentress, J.; McDonnell, J. J.; Hoffmann, L.; Pfister, L.

2012-04-01

very intense rainfall events cause a single-tailed rather small rise of the hydrograph in the Weierbach. Mixing diagrams suggest a very brief and intense switch from groundwater to soil water contribution. Almost simultaneously to incoming precipitation, terrestrial diatom abundance increases to 20-30% inside the stream. Species composition was also seasonally structured. During winter season (November 2010 and January 2011 events) the diatom drift was characterized and dominated by colony forming species (e.g. Fragilaria nevadensis Linares-Cuesta & Sánchez-Castillo and Fragilariforma virescens (Ralfs) Williams & Round), while summer events were characterized by a large number of small aerophytic species (i.e. Chamaepinnularia evanida (Hustedt) Lange-Bertalot, Eolimna tantula (Hustedt) Lange-Bertalot, Navicula obsoleta Hustedt, Navicula parsura Hustedt and Stauroneis thermicola (Petersen) Lund). Chemical tracers suggest a substantial role of soil water contributions to storm hydrographs in the Weierbach, regardless of the season, with overland flow playing no prominent role at all. Meanwhile, terrestrial diatom abundance in drift samples strongly increases during precipitation events, suggesting a rapid onset of connectivity between the soil surface and the stream. We assume the terrestrial diatoms to be mobilized during precipitation and eventually flushed to the stream through a subsurface network of macropores in the shallow soils and cracks in the fractured and weathered schistose bedrock.

Evolutionary origins and functions of the carotenoid biosynthetic pathway in marine diatoms.

Directory of Open Access Journals (Sweden)

Sacha Coesel

Full Text Available Carotenoids are produced by all photosynthetic organisms, where they play essential roles in light harvesting and photoprotection. The carotenoid biosynthetic pathway of diatoms is largely unstudied, but is of particular interest because these organisms have a very different evolutionary history with respect to the Plantae and are thought to be derived from an ancient secondary endosymbiosis between heterotrophic and autotrophic eukaryotes. Furthermore, diatoms have an additional xanthophyll-based cycle for dissipating excess light energy with respect to green algae and higher plants. To explore the origins and functions of the carotenoid pathway in diatoms we searched for genes encoding pathway components in the recently completed genome sequences of two marine diatoms. Consistent with the supplemental xanthophyll cycle in diatoms, we found more copies of the genes encoding violaxanthin de-epoxidase (VDE and zeaxanthin epoxidase (ZEP enzymes compared with other photosynthetic eukaryotes. However, the similarity of these enzymes with those of higher plants indicates that they had very probably diversified before the secondary endosymbiosis had occurred, implying that VDE and ZEP represent early eukaryotic innovations in the Plantae. Consequently, the diatom chromist lineage likely obtained all paralogues of ZEP and VDE genes during the process of secondary endosymbiosis by gene transfer from the nucleus of the algal endosymbiont to the host nucleus. Furthermore, the presence of a ZEP gene in Tetrahymena thermophila provides the first evidence for a secondary plastid gene encoded in a heterotrophic ciliate, providing support for the chromalveolate hypothesis. Protein domain structures and expression analyses in the pennate diatom Phaeodactylum tricornutum indicate diverse roles for the different ZEP and VDE isoforms and demonstrate that they are differentially regulated by light. These studies therefore reveal the ancient origins of several

Evolutionary origins and functions of the carotenoid biosynthetic pathway in marine diatoms.

Science.gov (United States)

Coesel, Sacha; Oborník, Miroslav; Varela, Joao; Falciatore, Angela; Bowler, Chris

2008-08-06

Carotenoids are produced by all photosynthetic organisms, where they play essential roles in light harvesting and photoprotection. The carotenoid biosynthetic pathway of diatoms is largely unstudied, but is of particular interest because these organisms have a very different evolutionary history with respect to the Plantae and are thought to be derived from an ancient secondary endosymbiosis between heterotrophic and autotrophic eukaryotes. Furthermore, diatoms have an additional xanthophyll-based cycle for dissipating excess light energy with respect to green algae and higher plants. To explore the origins and functions of the carotenoid pathway in diatoms we searched for genes encoding pathway components in the recently completed genome sequences of two marine diatoms. Consistent with the supplemental xanthophyll cycle in diatoms, we found more copies of the genes encoding violaxanthin de-epoxidase (VDE) and zeaxanthin epoxidase (ZEP) enzymes compared with other photosynthetic eukaryotes. However, the similarity of these enzymes with those of higher plants indicates that they had very probably diversified before the secondary endosymbiosis had occurred, implying that VDE and ZEP represent early eukaryotic innovations in the Plantae. Consequently, the diatom chromist lineage likely obtained all paralogues of ZEP and VDE genes during the process of secondary endosymbiosis by gene transfer from the nucleus of the algal endosymbiont to the host nucleus. Furthermore, the presence of a ZEP gene in Tetrahymena thermophila provides the first evidence for a secondary plastid gene encoded in a heterotrophic ciliate, providing support for the chromalveolate hypothesis. Protein domain structures and expression analyses in the pennate diatom Phaeodactylum tricornutum indicate diverse roles for the different ZEP and VDE isoforms and demonstrate that they are differentially regulated by light. These studies therefore reveal the ancient origins of several components of the

Climate Change and Algal Blooms =

Science.gov (United States)

Lin, Shengpan

Algal blooms are new emerging hazards that have had important social impacts in recent years. However, it was not very clear whether future climate change causing warming waters and stronger storm events would exacerbate the algal bloom problem. The goal of this dissertation was to evaluate the sensitivity of algal biomass to climate change in the continental United States. Long-term large-scale observations of algal biomass in inland lakes are challenging, but are necessary to relate climate change to algal blooms. To get observations at this scale, this dissertation applied machine-learning algorithms including boosted regression trees (BRT) in remote sensing of chlorophyll-a with Landsat TM/ETM+. The results show that the BRT algorithm improved model accuracy by 15%, compared to traditional linear regression. The remote sensing model explained 46% of the total variance of the ground-measured chlorophyll- a in the first National Lake Assessment conducted by the US Environmental Protection Agency. That accuracy was ecologically meaningful to study climate change impacts on algal blooms. Moreover, the BRT algorithm for chlorophyll- a would not have systematic bias that is introduced by sediments and colored dissolved organic matter, both of which might change concurrently with climate change and algal blooms. This dissertation shows that the existing atmospheric corrections for Landsat TM/ETM+ imagery might not be good enough to improve the remote sensing of chlorophyll-a in inland lakes. After deriving long-term algal biomass estimates from Landsat TM/ETM+, time series analysis was used to study the relations of climate change and algal biomass in four Missouri reservoirs. The results show that neither temperature nor precipitation was the only factor that controlled temporal variation of algal biomass. Different reservoirs, even different zones within the same reservoir, responded differently to temperature and precipitation changes. These findings were further

Diatoms as an indicator for tile drainage flow in a German lowland catchment.

Science.gov (United States)

Wu, Naicheng; Faber, Claas; Ulrich, Uta; Fohrer, Nicola

2018-01-01

The separation of runoff components within a model simulation is of great importance for a successful implementation of management measures. Diatoms could be a promising indicator for tile drainage flow due to their diverse preferences to different aquatic habitats. In this study, we collected diatom samples of 9 sites (4 tile drainage, TD, and 5 river sites, Ri) in a German lowland catchment at a weekly or biweekly time step from March to July 2013 with the aim of testing the suitability of diatoms for tile drainage flow, which is typical for lowland catchment. Planothidium lanceolatum , Ulnaria biceps , and Navicula gregaria dominated in TD sites with relative abundances of 22.2, 21.5, and 10.9%, respectively. For Ri sites, the most abundant species was Navicula lanceolata (20.5%), followed by Ulnaria biceps (12.9%), Cyclotella meneghiniana (9.5%), and Planothidium lanceolatum (9.3%). Compared with Ri sites, TD had a lower diatom density, biomass, species richness, and percentage of Aquatic/Riparian diatoms (AqRi%). However, the proportion of Riparian diatoms (RiZo%) increased at TD. Indicator value method (IndVal) revealed that the two groups (Ri and TD) were characterized by different indicator species. Fifteen taxa, including Cocconeis placentula , Cyclotella meneghiniana , N. lanceolata , and U. biceps , were significant indicators for Ri sites. Planothidium lanceolatum , Achnanthidium minutissimum , and Navicula gregaria were significant indicators for TD sites. A pronounced variation was found in the species lists of diatom community between Ri and TD water body types associated with different indicator species. With respect to hydrograph separation, these findings highlight the suitability of diatoms as an indicator for tile drainage flow. However, spatial and temporal variations of diatoms should be considered in future surveys.

Comparison of nutritional status of field and laboratory reared Balanus amphitrite Darwin (Cirripedia: Thoracica) larvae and implication of starvation

Digital Repository Service at National Institute of Oceanography (India)

Desai, D.V.; Anil, A.C.

and Smith, 1979; Anger, 1987).An increase in the rate of development may enhance the chances of larvae being swept away beyond the appropriate adult habitat and thus increase the risk of mortality from other sources.Itis suggested thateither thelack offood... were mass- reared in 2-l glass beakers (1 larva ml C01 ) on a daily diet of Chaetoceros calcitrans,a unicellular diatom, at two different cell concentrations, 1C210 5 and 2C210 5 cells ml C01 ,at 35x.Theculturesweremaintainedat20and30jC(F1j...

Dinoflagellate community structure from the stratified environment of the Bay of Bengal, with special emphasis on harmful algal bloom species

Digital Repository Service at National Institute of Oceanography (India)

Naik, R.K.; Hegde, S.; Anil, A.C.

the total marine phytoplankton species, approximately 7% are capable of forming algal blooms (red tides) (Sournia 1995); dinoflagellates are the most important group producing toxic and harmful algal blooms (Steidinger 1983, 1993; Anderson 1989... Taxonomic identification revealed 134 species of dinoflagellates in surface waters of the BOB during the observation period (Table 2). Further grouping of these identified species based on their nutritional mode, revealed 40 autotrophic, 50 mixotrophic...

The relevance of diatoms for water quality assessment in South ...

African Journals Online (AJOL)

Water quality assessment protocols based on the use of diatoms are now well developed and their value substantiated at an international level. The use of diatoms is not designed or intended to be a “rapid” technology. The detailed level of information generated from the procedure outweighs perceived disadvantages of ...

Processing and characterization of diatom nanoparticles and microparticles as potential source of silicon for bone tissue engineering

Energy Technology Data Exchange (ETDEWEB)

Le, Thi Duy Hanh [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Bonani, Walter [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Interuniversity Consortium for Science and Technology of Materials, Trento Research Unit, Trento (Italy); Speranza, Giorgio [Center for Materials and Microsystems, PAM-SE, Fondazione Bruno Kessler, Trento (Italy); Sglavo, Vincenzo; Ceccato, Riccardo [Department of Industrial Engineering, University of Trento, Trento (Italy); Maniglio, Devid; Motta, Antonella [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Interuniversity Consortium for Science and Technology of Materials, Trento Research Unit, Trento (Italy); Migliaresi, Claudio, E-mail: claudio.migliaresi@unitn.it [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Interuniversity Consortium for Science and Technology of Materials, Trento Research Unit, Trento (Italy)

2016-02-01

Silicon plays an important role in bone formation and maintenance, improving osteoblast cell function and inducing mineralization. Often, bone deformation and long bone abnormalities have been associated with silica/silicon deficiency. Diatomite, a natural deposit of diatom skeleton, is a cheap and abundant source of biogenic silica. The aim of the present study is to validate the potential of diatom particles derived from diatom skeletons as silicon-donor materials for bone tissue engineering applications. Raw diatomite (RD) and calcined diatomite (CD) powders were purified by acid treatments, and diatom microparticles (MPs) and nanoparticles (NPs) were produced by fragmentation of purified diatoms under alkaline conditions. The influence of processing on the surface chemical composition of purified diatomites was evaluated by X-ray photoelectron spectroscopy (XPS). Diatoms NPs were also characterized in terms of morphology and size distribution by transmission electron microscopy (TEM) and Dynamic light scattering (DLS), while diatom MPs morphology was analyzed by scanning electron microscopy (SEM). Surface area and microporosity of the diatom particles were evaluated by nitrogen physisorption methods. Release of silicon ions from diatom-derived particles was demonstrated using inductively coupled plasma optical emission spectrometry (ICP/OES); furthermore, silicon release kinetic was found to be influenced by diatomite purification method and particle size. Diatom-derived microparticles (MPs) and nanoparticles (NPs) showed limited or no cytotoxic effect in vitro depending on the administration conditions. - Highlights: • Diatomite is a natural source of silica and has a potential as silicon-donor for bone regenerative applications. • Diatom particles derived from purified diatom skeletons were prepared by fragmentation under extreme alkaline condition. • Dissolution of diatom particles derived from diatom skeletons in DI water depend on purification method

Radiational and energetic characteristics of diatomic molecules (data base)

International Nuclear Information System (INIS)

Kuznetsova, L.A.; Pazyuk, E.A.; Stolyarov, A.V.

1993-01-01

Data base on radiational and energetic characteristics of diatomic molecules was created. The base consists of two parts: reference system and recommended data system. The reference system contains the information about studies of radiational and energetic parameters of more than 1500 electronic states and 1700 electron transfers for ∼ 350 diatomic molecules and their ions. The base bibliography includes ∼ 3000 publications. 11 refs., 1 figs

Rethinking Bloom's Taxonomy: Implications for Testing and Assessment.

Science.gov (United States)

Anderson, Lorin W.

This paper describes a work in progress on a second edition of "Taxonomy of Educational Objectives, The Classification of Educational Goals, Handbook I: Cognitive Domain," also known as "Bloom's Taxonomy" (B. Bloom and others, Eds., 1956). The new edition will be grounded in the collective wisdom of the original…

Under-Ice Phytoplankton Blooms Inhibited by Spring Convective Mixing in Refreezing Leads

Science.gov (United States)

Lowry, Kate E.; Pickart, Robert S.; Selz, Virginia; Mills, Matthew M.; Pacini, Astrid; Lewis, Kate M.; Joy-Warren, Hannah L.; Nobre, Carolina; van Dijken, Gert L.; Grondin, Pierre-Luc; Ferland, Joannie; Arrigo, Kevin R.

2018-01-01

Spring phytoplankton growth in polar marine ecosystems is limited by light availability beneath ice-covered waters, particularly early in the season prior to snowmelt and melt pond formation. Leads of open water increase light transmission to the ice-covered ocean and are sites of air-sea exchange. We explore the role of leads in controlling phytoplankton bloom dynamics within the sea ice zone of the Arctic Ocean. Data are presented from spring measurements in the Chukchi Sea during the Study of Under-ice Blooms In the Chukchi Ecosystem (SUBICE) program in May and June 2014. We observed that fully consolidated sea ice supported modest under-ice blooms, while waters beneath sea ice with leads had significantly lower phytoplankton biomass, despite high nutrient availability. Through an analysis of hydrographic and biological properties, we attribute this counterintuitive finding to springtime convective mixing in refreezing leads of open water. Our results demonstrate that waters beneath loosely consolidated sea ice (84-95% ice concentration) had weak stratification and were frequently mixed below the critical depth (the depth at which depth-integrated production balances depth-integrated respiration). These findings are supported by theoretical model calculations of under-ice light, primary production, and critical depth at varied lead fractions. The model demonstrates that under-ice blooms can form even beneath snow-covered sea ice in the absence of mixing but not in more deeply mixed waters beneath sea ice with refreezing leads. Future estimates of primary production should account for these phytoplankton dynamics in ice-covered waters.

Biological monitoring of lotic ecosystems: the role of diatoms Biomonitoramento dos ecossistemas lóticos: o papel das diatomáceas

Directory of Open Access Journals (Sweden)

T. Bere

2010-08-01

Full Text Available Increasing anthropogenic influence on lotic environments as a result of civilisation has captured public interest because of the consequent problems associated with deterioration of water quality. Various biological monitoring methods that provide a direct measure of ecological integrity by using the response of biota to environmental changes have been developed to monitor the ecological status of lotic environments. Diatoms have been used extensively in this regard and this review attempts to summarise the basic concepts associated with biological monitoring using benthic diatoms. Where possible, examples from work carried out in Brazil are used.O aumento da influência antropogênica sobre ambientes lóticos como resultado da civilização conquistou o interesse público por causa de problemas relacionados com a consequente deterioração da qualidade da água. Vários métodos de biomonitoramento que fornecem uma medida direta da integridade ecológica usando a resposta da biota a alterações ambientais têm sido desenvolvidos para monitorar o estado ecológico de ecossistemas lóticos. Diatomáceas têm sido amplamente utilizadas e esta revisão tenta resumir os conceitos básicos associados ao monitoramento biológico utilizando diatomáceas bentônicas. Sempre que possível, exemplos de trabalhos realizados no Brasil serão utilizados.

Quantification of Dissolved and Particulate Polyunsaturated Aldehydes in the Adriatic Sea

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Raffaella Casotti

2011-03-01

Full Text Available Polyunsaturated aldehydes (PUA are supposed to play critical roles in chemically-mediated plankton interactions. Laboratory studies suggest that they act as mediators of chemical defense and chemical communication. PUA are oxylipins containing an α,β,γ,δ-unsaturated aldehyde structure element and are mainly found in diatoms. We present here a detailed surface mapping of PUA during a spring bloom of the diatom Skeletonema marinoi in the Adriatic Sea. We monitored dissolved PUA, as well as particulate PUA, which are produced by phytoplankton after cell disintegration. Our survey revealed a patchy distribution of PUA and shows that at most stations S. marinoi is the major contributor to the overall PUA. Our data also suggest that lysis of a diatom bloom can contribute significantly to the dissolved PUA concentrations and that other producers, which are smaller in cell size compared to diatoms, have to be taken into account as well if the total PUA content of marine samples is considered. The analyses of samples collected in deeper water suggests that diatom contribution to PUA decreases with depth, while smaller-sized unidentified organisms take place as dominant contributors to the PUA concentrations.

Harmful algal bloom smart device application: using image analysis and machine learning techniques for early classification of harmful algal blooms (SETAC presentation)

Science.gov (United States)

Reports of toxic cyanobacterial blooms, also known as Harmful Algal Blooms (HABS) have increased drastically in recent years. HABS impact human health from causing mild allergies to liver damage and death. The Ecological Stewardship Institute (ESI) at Northern Kentucky Universi...

Algicidal Effects of a Novel Marine Pseudoalteromonas Isolate (Class Proteobacteria, Gamma Subdivision) on Harmful Algal Bloom Species of the Genera Chattonella, Gymnodinium, and Heterosigma

Science.gov (United States)

Lovejoy, Connie; Bowman, John P.; Hallegraeff, Gustaaf M.

1998-01-01

During a bacterial survey of the Huon Estuary in southern Tasmania, Australia, we isolated a yellow-pigmented Pseudoalteromonas strain (class Proteobacteria, gamma subdivision), designated strain Y, that had potent algicidal effects on harmful algal bloom species. This organism was identified by 16S rRNA sequencing as a strain with close affinities to Pseudoalteromonas peptidysin. This bacterium caused rapid cell lysis and death (within 3 h) of gymnodinoids (including Gymnodinium catenatum) and raphidophytes (Chattonella marina and Heterosigma akashiwo). It caused ecdysis of armored dinoflagellates (e.g., Alexandrium catenella, Alexandrium minutum, and Prorocentrum mexicanum), but the algal cultures then recovered over the subsequent 24 h. Strain Y had no effect on a cryptomonad (Chroomonas sp.), a diatom (Skeletonema sp.), a cyanobacterium (Oscillatoria sp.), and two aplastidic protozoans. The algicidal principle of strain Y was excreted into the seawater medium and lost its efficacy after heating. Another common bacterial species, Pseudoalteromonas carrageenovora, was isolated at the same time and did not have these algicidal effects. The minimum concentrations of strain Y required to kill G. catenatum were higher than the mean concentrations found in nature under nonbloom conditions. However, the new bacterium showed a chemotactic, swarming behavior that resulted in localized high concentrations around target organisms. These observations imply that certain bacteria could play an important role in regulating the onset and development of harmful algal blooms. PMID:9687434

Tropical cyanobacterial blooms: a review of prevalence, problem taxa, toxins and influencing environmental factors

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Maxine A.D. Mowe

2014-12-01

Full Text Available Toxic cyanobacterial blooms are a major issue in freshwater systems in many countries. The potentially toxic species and their ecological causes are likely to be different in tropical zones from those in temperate water bodies; however, studies on tropical toxic cyanobacterial blooms are sporadic and currently there is no global synthesis. In this review, we examined published information on tropical cyanobacterial bloom occurrence and toxin production to investigate patterns in their growth and distribution. Microcystis was the most frequently occurring bloom genus throughout tropical Asia, Africa and Central America, while Cylindrospermopsis and Anabaena blooms occurred in various locations in tropical Australia, America and Africa. Microcystis blooms were more prevalent during the wet season while Cylindrospermopsis blooms were more prevalent during the dry period. Microcystin was the most encountered toxin throughout the tropics. A meta-analysis of tropical cyanobacterial blooms showed that Microcystis blooms were more associated with higher total nitrogen concentrations, while Cylindrospermopsis blooms were more associated with higher maximum temperatures. Meta-analysis also showed a positive linear relationship between levels of microcystin and N:P (nitrate:phosphate ratio. Tropical African Microcystis blooms were found to have the lowest microcystin levels in relation to biomass and N:P (nitrate:phosphate compared to tropical Asian, Australian and American blooms. There was also no significant correlation between microcystin concentration and cell concentration for tropical African blooms as opposed to tropical Asian and American blooms. Our review illustrates that some cyanobacteria and toxins are more prevalent in tropical areas. While some tropical countries have considerable information regarding toxic blooms, others have few or no reported studies. 

Influence of land-use patterns on benthic diatom communities and ...

African Journals Online (AJOL)

The objective of this study was to determine the effects of land-use patterns on both diatom community composition and water quality in tropical streams during the dry season. Benthic diatom collections and water quality sampling were done 4 times at 10 sites. A suite of environmental variables that varied with human ...

Hydrodynamic control of microphytoplankton bloom in a coastal sea

Indian Academy of Sciences (India)

Hydrodynamic control of microphytoplankton bloom in a coastal sea ... many times more than what could be accounted for by solar insolation and nutrient levels. ... and stable water column and weak winds left undisturbed, the transient bloom.

An Artificial Neural Network Based Short-term Dynamic Prediction of Algae Bloom

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Yao Junyang

2014-06-01

Full Text Available This paper proposes a method of short-term prediction of algae bloom based on artificial neural network. Firstly, principal component analysis is applied to water environmental factors in algae bloom raceway ponds to get main factors that influence the formation of algae blooms. Then, a model of short-term dynamic prediction based on neural network is built with the current chlorophyll_a values as input and the chlorophyll_a values in the next moment as output to realize short-term dynamic prediction of algae bloom. Simulation results show that the model can realize short-term prediction of algae bloom effectively.

Cenozoic planktonic marine diatom diversity and correlation to climate change

Science.gov (United States)

Lazarus, David; Barron, John; Renaudie, Johan; Diver, Patrick; Türke, Andreas

2014-01-01

Marine planktonic diatoms export carbon to the deep ocean, playing a key role in the global carbon cycle. Although commonly thought to have diversified over the Cenozoic as global oceans cooled, only two conflicting quantitative reconstructions exist, both from the Neptune deep-sea microfossil occurrences database. Total diversity shows Cenozoic increase but is sample size biased; conventional subsampling shows little net change. We calculate diversity from a separately compiled new diatom species range catalog, and recalculate Neptune subsampled-in-bin diversity using new methods to correct for increasing Cenozoic geographic endemism and decreasing Cenozoic evenness. We find coherent, substantial Cenozoic diversification in both datasets. Many living cold water species, including species important for export productivity, originate only in the latest Miocene or younger. We make a first quantitative comparison of diatom diversity to the global Cenozoic benthic ∂18O (climate) and carbon cycle records (∂13C, and 20-0 Ma pCO2). Warmer climates are strongly correlated with lower diatom diversity (raw: rho = .92, p2 were only moderately higher than today. Diversity is strongly correlated to both ∂13C and pCO2 over the last 15 my (for both: r>.9, detrended r>.6, all p<.001), but only weakly over the earlier Cenozoic, suggesting increasingly strong linkage of diatom and climate evolution in the Neogene. Our results suggest that many living marine planktonic diatom species may be at risk of extinction in future warm oceans, with an unknown but potentially substantial negative impact on the ocean biologic pump and oceanic carbon sequestration. We cannot however extrapolate our my-scale correlations with generic climate proxies to anthropogenic time-scales of warming without additional species-specific information on proximate ecologic controls.

The Haber Bosch-harmful algal bloom (HB-HAB) link

Science.gov (United States)

Glibert, Patricia M.; Maranger, Roxane; Sobota, Daniel J.; Bouwman, Lex

2014-10-01

Large-scale commercialization of the Haber-Bosch (HB) process is resulting in intensification of nitrogen (N) fertilizer use worldwide. Globally N fertilizer use is far outpacing that of phosphorus (P) fertilizer. Much of the increase in N fertilizers is also now in the form of urea, a reduced form of N. Incorporation of these fertilizers into agricultural products is inefficient leading to significant environmental pollution and aquatic eutrophication. Of particular concern is the increased occurrence of harmful algal blooms (HABs) in waters receiving nutrient enriched runoff. Many phytoplankton causing HABs have physiological adaptive strategies that make them favored under conditions of elevated N : P conditions and supply of chemically reduced N (ammonium, urea). We propose that the HB-HAB link is a function of (1) the inefficiency of incorporation of N fertilizers in the food supply chain, the leakiness of the N cycle from crop to table, and the fate of lost N relative to P to the environment; and (2) adaptive physiology of many HABs to thrive in environments in which there is excess N relative to classic nutrient stoichiometric proportions and where chemically reduced forms of N dominate. The rate of HAB expansion is particularly pronounced in China where N fertilizer use has escalated very rapidly, where soil retention is declining, and where blooms have had large economic and ecological impacts. There, in addition to increased use of urea and high N : P based fertilizers overall, escalating aquaculture production adds to the availability of reduced forms of N, as does atmospheric deposition of ammonia. HABs in both freshwaters and marginal seas in China are highly related to these overall changing N loads and ratios. Without more aggressive N control the future outlook in terms of HABs is likely to include more events, more often, and they may also be more toxic.

The Haber Bosch–harmful algal bloom (HB–HAB) link

International Nuclear Information System (INIS)

Glibert, Patricia M; Maranger, Roxane; Sobota, Daniel J; Bouwman, Lex

2014-01-01

Large-scale commercialization of the Haber–Bosch (HB) process is resulting in intensification of nitrogen (N) fertilizer use worldwide. Globally N fertilizer use is far outpacing that of phosphorus (P) fertilizer. Much of the increase in N fertilizers is also now in the form of urea, a reduced form of N. Incorporation of these fertilizers into agricultural products is inefficient leading to significant environmental pollution and aquatic eutrophication. Of particular concern is the increased occurrence of harmful algal blooms (HABs) in waters receiving nutrient enriched runoff. Many phytoplankton causing HABs have physiological adaptive strategies that make them favored under conditions of elevated N : P conditions and supply of chemically reduced N (ammonium, urea). We propose that the HB-HAB link is a function of (1) the inefficiency of incorporation of N fertilizers in the food supply chain, the leakiness of the N cycle from crop to table, and the fate of lost N relative to P to the environment; and (2) adaptive physiology of many HABs to thrive in environments in which there is excess N relative to classic nutrient stoichiometric proportions and where chemically reduced forms of N dominate. The rate of HAB expansion is particularly pronounced in China where N fertilizer use has escalated very rapidly, where soil retention is declining, and where blooms have had large economic and ecological impacts. There, in addition to increased use of urea and high N : P based fertilizers overall, escalating aquaculture production adds to the availability of reduced forms of N, as does atmospheric deposition of ammonia. HABs in both freshwaters and marginal seas in China are highly related to these overall changing N loads and ratios. Without more aggressive N control the future outlook in terms of HABs is likely to include more events, more often, and they may also be more toxic. (paper)

Diatom flora in subterranean ecosystems: a review

Directory of Open Access Journals (Sweden)

Elisa Falasco

2014-09-01

Full Text Available In scarcity of light and primary producers, subterranean ecosystems are generally extremely oligotrophic habitats, receiving poor supplies of degradable organic matter from the surface. Human direct impacts on cave ecosystems mainly derive from intensive tourism and recreational caving, causing important alterations to the whole subterranean environment. In particular, artificial lighting systems in show caves support the growth of autotrophic organisms (the so-called lampenflora, mainly composed of cyanobacteria, diatoms, chlorophytes, mosses and ferns producing exocellular polymeric substances (EPSs made of polysaccharides, proteins, lipids and nucleic acids. This anionic EPSs matrix mediates to the intercellular communications and participates to the chemical exchanges with the substratum, inducing the adsorption of cations and dissolved organic molecules from the cave formations (speleothems. Coupled with the metabolic activities of heterotrophic microorganisms colonising such layer (biofilm, this phenomenon may lead to the corrosion of the mineral surfaces. In this review, we investigate the formation of biofilms, especially of diatom-dominated ones, as a consequence of artificial lighting and its impacts on speleothems. Whenever light reaches the subterranean habitat (both artificially and naturally a relative high number of species of diatoms may indeed colonise it. Cave entrances, artificially illuminated walls and speleothems inside the cave are generally the preferred substrates. This review focuses on the diatom flora colonising subterranean habitats, summarizing the information contained in all the scientific papers published from 1900 up to date. In this review we provide a complete checklist of the diatom taxa recorded in subterranean habitats, including a total of 363 taxa, belonging to 82 genera. The most frequent and abundant species recorded in caves and other low light subterranean habitats are generally aerophilic and

Relationships between diatoms and tidal environments in Oregon and Washington, USA

Science.gov (United States)

Sawai, Yuki; Horton, Benjamin P.; Kemp, Andrew C.; Hawkes, Andrea D.; Nagumo, Tamostsu; Nelson, Alan R.

2016-01-01

A new regional dataset comprising 425 intertidal diatom taxa from 175 samples from 11 ecologically diverse Oregon and Washington estuaries illustrates the importance of compiling a large modern dataset from a range of sites. Cluster analyses and detrended correspondence analysis of the diatom assemblages identify distinct vertical zones within supratidal, intertidal and subtidal environments at six of the 11 study sites, but the abundance of some of the most common species varies widely among and within sites. Canonical correspondence analysis of the regional dataset shows relationships between diatom species and tidal exposure, salinity and substratum (grain size and organic content). Correspondence analyses of local datasets show higher values of explained variation than the analysis of the combined regional dataset. Our results emphasize that studies of the autecology of diatom species require many samples from a range of modern environments to adequately characterize species–environment relationships.

The UV filtering potential of drop-casted layers of frustules of three diatom species

DEFF Research Database (Denmark)

Su, Yanyan; Lenau, Torben Anker; Gundersen, Emil

2018-01-01

Diatoms are in focus as biological materials for a range of photonic applications. Many of theseapplications would require embedding a multitude of diatoms in a matrix (e.g. paint, crème or lacquer); however, most studies on the photonic and spectral properties of diatoms frustules (silica walls)...

The role of diatom resting spores in pelagic-benthic coupling in the Southern Ocean

Science.gov (United States)

Rembauville, Mathieu; Blain, Stéphane; Manno, Clara; Tarling, Geraint; Thompson, Anu; Wolff, George; Salter, Ian

2018-05-01

Natural iron fertilization downstream of Southern Ocean island plateaus supports large phytoplankton blooms and promotes carbon export from the mixed layer. In addition to sequestering atmospheric CO2, the biological carbon pump also supplies organic matter (OM) to deep-ocean ecosystems. Although the total flux of OM arriving at the seafloor sets the energy input to the system, the chemical nature of OM is also of significance. However, a quantitative framework linking ecological flux vectors to OM composition is currently lacking. In the present study we report the lipid composition of export fluxes collected by five moored sediment traps deployed in contrasting productivity regimes of Southern Ocean island systems (Kerguelen, Crozet and South Georgia) and compile them with quantitative data on diatom and faecal pellet fluxes. At the three naturally iron-fertilized sites, the relative contribution of labile lipids (mono- and polyunsaturated fatty acids, unsaturated fatty alcohols) is 2-4 times higher than at low productivity sites. There is a strong attenuation of labile components as a function of depth, irrespective of productivity. The three island systems also display regional characteristics in lipid export. An enrichment of zooplankton dietary sterols, such as C27Δ5, at South Georgia is consistent with high zooplankton and krill biomass in the region and the importance of faecal pellets to particulate organic carbon (POC) flux. There is a strong association of diatom resting spore fluxes that dominate productive flux regimes with energy-rich unsaturated fatty acids. At the Kerguelen Plateau we provide a statistical framework to link seasonal variation in ecological flux vectors and lipid composition over a complete annual cycle. Our analyses demonstrate that ecological processes in the upper ocean, e.g. resting spore formation and grazing, not only impact the magnitude and stoichiometry of the Southern Ocean biological pump, but also regulate the

Consortial brown tide - picocyanobacteria blooms in Guantánamo Bay, Cuba.

Science.gov (United States)

Hall, Nathan S; Litaker, R Wayne; Kenworthy, W Judson; Vandersea, Mark W; Sunda, William G; Reid, James P; Slone, Daniel H; Butler, Susan

2018-03-01

A brown tide bloom of Aureoumbra lagunensis developed in Guantánamo Bay, Cuba during a period of drought in 2013 that followed heavy winds and rainfall from Hurricane Sandy in late October 2012. Based on satellite images and water turbidity measurements, the bloom appeared to initiate in January 2013. The causative species (A. lagunensis) was confirmed by microscopic observation, and pigment and genetic analyses of bloom samples collected on May 28 of that year. During that time, A. lagunensis reached concentrations of 900,000 cells ml -1 (28 ppm by biovolume) in the middle portion of the Bay. Samples could not be collected from the northern (Cuban) half of the Bay because of political considerations. Subsequent sampling of the southern half of the Bay in November 2013, April 2014, and October 2014 showed persistent lower concentrations of A. lagunensis, with dominance shifting to the cyanobacterium Synechococcus (up to 33 ppm in April), an algal group that comprised a minor bloom component on May 28. Thus, unlike the brown tide bloom in Laguna Madre, which lasted 8 years, the bloom in Guantánamo Bay was short-lived, much like recent blooms in the Indian River, Florida. Although hypersaline conditions have been linked to brown tide development in the lagoons of Texas and Florida, observed euhaline conditions in Guantánamo Bay (salinity 35-36) indicate that strong hypersalinity is not a requirement for A. lagunensis bloom formation. Microzooplankton biomass dominated by ciliates was high during the observed peak of the brown tide, and ciliate abundance was high compared to other systems not impacted by brown tide. Preferential grazing by zooplankton on non-brown tide species, as shown in A. lagunensis blooms in Texas and Florida, may have been a factor in the development of the Cuban brown tide bloom. However, subsequent selection of microzooplankton capable of utilizing A. lagunensis as a primary food source may have contributed to the short-lived duration

Diatoms as a fingerprint of sub-catchment contributions to meso-scale catchment runoff

Science.gov (United States)

Klaus, Julian; Wetzel, Carlos E.; Martinez-Carreras, Nuria; Ector, Luc; Pfister, Laurent

2014-05-01

In recent years, calls were made for new eco-hydrological approaches to improve understanding of hydrological processes. Recently diatoms, one of the most common and diverse algal groups that can be easily transported by flowing water due to their small size (~10-200 µm), were used to detect the onset and cessation of surface runoff to small headwater streams and constrain isotopic and hydro-chemical hydrograph separation methods. While the method showed its potential in the hillslope-riparian zone-stream continuum of headwater catchments, the behavior of diatoms and their use for hydrological process research in meso-scale catchments remains uncertain. Diatoms can be a valuable support for isotope and hydro-chemical tracer methods when these become ambiguous with increasing scale. Distribution and abundance of diatom species is controlled by various environmental factors (pH, soil type, moisture conditions, exposition to sunlight, etc.). We therefore hypothesize that species abundance and composition can be used as a proxy for source areas. This presentation evaluates the potential for diatoms to trace source-areas in the nested meso-scale Attert River basin (250 km2, Luxembourg, Europe). We sampled diatom populations in streamwater during one flood event in Fall 2011 in 6 sub-catchments and the basin outlet - 17 to 28 samples/catchment for the different sampling locations. Diatoms were classified and counted in every individual sample. In total more than 400 diatom species were detected. Ordination analysis revealed a clear distinction between communities sampled in different sub-catchments. The species composition at the catchment outlet reflects a mixing of the diatom composition originating from different sub-catchments. This data suggests that diatoms indeed can reflect the geographic origin of stream water at the catchment outlet. The centroids of the ordination analysis might be linked to the physiographic characteristics (geology and land use) of the

Didymosphenia geminata invasion in South America: Ecosystem impacts and potential biogeochemical state change in Patagonian rivers

Science.gov (United States)

Reid, Brian; Torres, Rodrigo

2014-01-01

The diatom Didymosphenia geminata has emerged as a major global concern, as both an aggressive invader of rivers and streams in the southern hemisphere, and for its ability to form nuisance blooms in oligotrophic systems in its native range. South American D. geminata blooms were first documented in Chilean Patagonia in May 2010, and have spread to over five regions and three provinces, in Chile and Argentina respectively. The Patagonian invasion represents a distinct challenge compared to other regions; not only are affected systems poorly characterized, but also a general synthesis of the nature and magnitude of ecosystem impacts is still lacking. The latter is essential in evaluating impacts to ecosystem services, forms the basis for a management response that is proportional to the potentially valid threats, or aids in the determination of whether action is warranted or feasible. Based on a revision of the recent literature, some of the most significant impacts may be mediated through physical changes: substantially increased algal biomass, trapping of fine sediment, altered hydrodynamics, and consequent effects on biogeochemical states and processes such as redox condition, pH and nutrient cycling in the benthic zone. Surveys conducted during the early invasion in Chile show a strong correlation between benthic biomass and associated fine sediments, both of which were one-two orders of magnitude higher within D. geminata blooms. Experimental phosphorous amendments showed significant abiotic uptake, while interstitial water in D. geminata mats had nearly 10-20 fold higher soluble reactive phosphorous and a pronounced pH cycle compared to the water column. A dominant and aggressive stalk-forming diatom with this combination of characteristics is in sharp contrast to the colonial cyanobacteria and bare gravel substrate that characterize many Patagonian streams. The potential displacement of native benthic algal communities with contrasting functional groups

Diatom distribution in the surficial sediments of Lake Fuxian, Yunnan ...

African Journals Online (AJOL)

ajl yemi

2011-11-30

Nov 30, 2011 ... The diatom abundances per gram dry weight sediment vary between 18.4 × 106 and 66.9 × 106 valves (Figure 2). Abundances per gram dry weight of the eight most abundant diatom taxa are shown in Figure 3. The DCA diagram shows centroids of ecoregions in the ordination space of the first axes.

Interference patterns and extinction ratio of the diatom Coscinodiscus granii

DEFF Research Database (Denmark)

Maibohm, Christian; Friis, Søren Michael Mørk; Ellegaard, M.

2015-01-01

We report experimental and theoretical verification of the nature and position of multiple interference points of visible light transmitted through the valve of the centric diatom species Coscinodiscus granii. Furthermore, by coupling the transmitted light into an optical fiber and moving...... the diatom valve between constructive and destructive interference points, an extinction ratio of 20 dB is shown...

Effects of increase glacier discharge on phytoplankton bloom dynamics and pelagic geochemistry in a high Arctic fjord

Science.gov (United States)

Calleja, Maria Ll.; Kerhervé, P.; Bourgeois, S.; Kędra, M.; Leynaert, A.; Devred, E.; Babin, M.; Morata, N.

2017-12-01

Arctic fjords experience extremely pronounced seasonal variability and spatial heterogeneity associated with changes in ice cover, glacial retreat and the intrusion of continental shelf's adjacent water masses. Global warming intensifies natural environmental variability on these important systems, yet the regional and global effects of these processes are still poorly understood. In the present study, we examine seasonal and spatial variability in Kongsfjorden, on the western coast of Spitsbergen, Svalbard. We report hydrological, biological, and biogeochemical data collected during spring, summer, and fall 2012. Our results show a strong phytoplankton bloom with the highest chlorophyll a (Chla) levels ever reported in this area, peaking 15.5 μg/L during late May and completely dominated by large diatoms at the inner fjord, that may sustain both pelagic and benthic production under weakly stratified conditions at the glacier front. A progressively stronger stratification of the water column during summer and fall was shaped by the intrusion of warm Atlantic water (T > 3 °C and Sal > 34.65) into the fjord at around 100 m depth, and by turbid freshwater plumes (T carbon fractions and isotopic signatures of the particulate organic material (POM) revealed very fresh and labile material produced during the spring bloom (13C enriched, with values up to -22.7‰ at the highest Chl a peak, and high in carbohydrates and proteins content - up to 167 and 148 μg/L, respectively-), and a clear and strong continental signature of the POM present during late summer and fall (13C depleted, with values averaging -26.5‰, and high in lipid content - up to 92 μg/L-) when freshwater melting is accentuated. Our data evidence the importance of combining both physical (i.e. water mass dominance) and geochemical (i.e. characteristics of material released by glacier runoff) data in order to understand the timing, intensity and characteristics of the phytoplankton bloom in

A first report on a bloom of the marine prymnesiophycean, Phaeocystis globosa from the Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Madhupratap, M.; Sawant, S.S.; Gauns, M.

A thick bloom of the marine prymnesiophycean, Phaeocystis globosa was observed in the central Arabian Sea during the summer monsoon period (July-August, 1996). The cells were mostly in colonial form, embedded in gelatinous matrics. The cell diameter...

Low-Molecular-Weight Metabolites from Diatoms: Structures, Biological Roles and Biosynthesis

Directory of Open Access Journals (Sweden)

Valentin Stonik

2015-06-01

Full Text Available Diatoms are abundant and important biological components of the marine environment that biosynthesize diverse natural products. These microalgae are rich in various lipids, carotenoids, sterols and isoprenoids, some of them containing toxins and other metabolites. Several groups of diatom natural products have attracted great interest due to their potential practical application as energy sources (biofuel, valuable food constituents, and prospective materials for nanotechnology. In addition, hydrocarbons, which are used in climate reconstruction, polyamines which participate in biomineralization, new apoptotic agents against tumor cells, attractants and deterrents that regulate the biochemical communications between marine species in seawaters have also been isolated from diatoms. However, chemical studies on these microalgae are complicated by difficulties, connected with obtaining their biomass, and the influence of nutrients and contaminators in their environment as well as by seasonal and climatic factors on the biosynthesis of the corresponding natural products. Overall, the number of chemically studied diatoms is lower than that of other algae, but further studies, particularly those connected with improvements in the isolation and structure elucidation technique as well as the genomics of diatoms, promise both to increase the number of studied species with isolated biologically active natural products and to provide a clearer perception of their biosynthesis.

The plankton community on Sukkertop and Fylla Banks off West Greenland during a spring bloom and post-bloom period: Hydrography, phytoplankton and protozooplankton

DEFF Research Database (Denmark)

Poulsen, Louise K.; Reuss, N.

2002-01-01

The plankton community structure was investigated on Sukkertop and Fylla Banks off West Greenland during the spring bloom in May 2000 and the post-bloom period in June 1999. In May a small change in density, clearly illustrated by the profile of potential energy, was sufficient to support a spring...... the phytoplankton community. Heterotrophic biomass was low (5 +/- 1 mg C m(-3)) and an important part was comprised by heterotrophic nanoflagellates (24 +/- 1%). Protozooplankters (heterotrophic dinoflagellates and ciliates) were important grazers of the phytoplankton community in the post-bloom period (estimated...

Seasonal and daily fluctuation of diatoms during spring tide periods in Kerkennah Islands

Directory of Open Access Journals (Sweden)

Mounir Ben brahim

2015-06-01

Full Text Available Objective: To study seasonal and the daily distribution of diatoms in the three tidal periods (flood, slack and ebb period during the spring tide. Methods: Water samples were taken and environmental variables were measured three times in each tidal period during 10 days of spring tide. Sampling was done in 2007 in Cercina station located in the western coast of Kerkennah (34°41'27'' N; 11°07'45'' E (Southern Tunisia. Results: Nutrients showed significant variation between seasons, increasing in spring and decreasing noticeably in autumn and winter. About 36 diatom species were found. Results revealed a remarkable abundance increase in spring and summer. Irregular differences in diatom abundances were revealed over the tidal periods, with the highest rates being detected during the flood and the ebb period, while the abundance rate was lowest during the slack period. This could presumably be attributed to the increase of nutrient supply of suspended particulate matter during water motion. The results revealed a correlation between diatom abundance and temperature, NO2 - , NO3 - , Si(OH4 and PO4 3 . Temperature seemed to be the most important factors which may influence the distribution and diatom abundance. Conclusions: Tide has various effects on the nutrients status and diatoms community (in terms of species composition, succession and abundance between different tidal periods. Fluctuation of diatoms was correlated with changes in the circulation of water bodies and changes in nutrient regime.

Export of a Winter Shelf Phytoplankton Bloom at the Shelf Margin of Long Bay (South Atlantic Bight, USA)

Science.gov (United States)

Nelson, J.; Seim, H.; Edwards, C. R.; Lockhart, S.; Moore, T.; Robertson, C. Y.; Amft, J.

2016-02-01

A winter 2012 field study off Long Bay (seaward of Myrtle Beach, South Carolina) investigated exchange processes along the shelf margin. Topics addressed included mechanisms of nutrient input (upper slope to outer shelf), phytoplankton blooms and community characteristics (mid-to-outer shelf), and possible export of shelf bloom material (transport to and across the shelf break to the upper slope). Observations utilized three moorings (mid-shelf, shelf break, upper slope), two gliders and ship operations (repeat cruises with profiling, water sampling and towed body surveys) along with satellite SST and ocean color imagery and near-by NOAA buoy records. Here we focus on the late January to early February period, when a mid-shelf bloom of Phaeocystis globosa (which forms large gelatinous colonies) was transported to the shelf break. The presence of Phaeocystis colonies resulted in strong spiking in chlorophyll (chl) fluorescence profiles. A partitioning approach was adapted to estimate chl in colonies (spikes) and small forms (baseline signal) and to account for an apparent difference in measured in vivo fluorescence per unit chl (lower in colonies). Up to 40-50% of chl in the bloom (surface to bottom on the mid-shelf) was estimated to be in the colonies. In late January, there a pronounced seaward slumping of relatively dense mid-shelf water along the bottom under warmer surface water derived from the inshore edge of a broad jet of Gulf Stream water flowing southwestward along the upper slope. We describe the evolution of this event and the conditions which set up this mechanism for episodic near-bed transport of fresh bloom material produced on the shelf to the upper slope off Long Bay. Down-slope transport may have been enhanced in this case by the high phytoplankton biomass in gelatinous colonies, which appeared to be settling in the water column on the shelf prior to the transport event.

Seaweed Bioactive Compounds against Pathogens and Microalgae: Potential Uses on Pharmacology and Harmful Algae Bloom Control.

Science.gov (United States)

Zerrifi, Soukaina El Amrani; El Khalloufi, Fatima; Oudra, Brahim; Vasconcelos, Vitor

2018-02-09

Cyanobacteria are found globally due to their adaptation to various environments. The occurrence of cyanobacterial blooms is not a new phenomenon. The bloom-forming and toxin-producing species have been a persistent nuisance all over the world over the last decades. Evidence suggests that this trend might be attributed to a complex interplay of direct and indirect anthropogenic influences. To control cyanobacterial blooms, various strategies, including physical, chemical, and biological methods have been proposed. Nevertheless, the use of those strategies is usually not effective. The isolation of natural compounds from many aquatic and terrestrial plants and seaweeds has become an alternative approach for controlling harmful algae in aquatic systems. Seaweeds have received attention from scientists because of their bioactive compounds with antibacterial, antifungal, anti-microalgae, and antioxidant properties. The undesirable effects of cyanobacteria proliferations and potential control methods are here reviewed, focusing on the use of potent bioactive compounds, isolated from seaweeds, against microalgae and cyanobacteria growth.

A review of carbon blooms on JET and TFTR

International Nuclear Information System (INIS)

Ulrickson, M.

1990-01-01

Operation of JET and TFTR at high auxiliary heating power has resulted in the occurrence of phenomena called carbon blooms. The carbon bloom is characterized by a rapid increases in the emission of carbon spectral lines, the Z eff , the radiated power, and the plasma density. There is also a concurrent decrease in the neutron emission rate, stored energy, and plasma pressure. On both machines the source of the carbon is observed to be at localized (both toroidally and polidally) hot spots on either the divertor plates or limiters. The localized hot spots are due to one or more of the following: disruption damage spots, misalignment of tiles, and/or exposed edges of tiles. The occurrence of carbon blooms limits the performance of the highest input power plasmas on both machines. This paper reviews the carbon bloom phenomenon as it occurs on both JET and TFTR. (orig.)

Health risk assessment standards of cyanobacteria bloom occurrence in bathing sites

Directory of Open Access Journals (Sweden)

Agnieszka Stankiewicz

2011-03-01

Full Text Available Threat for human health appears during a massive cyanobacteria bloom in potable water used for human consumption or in basins used for recreational purposes. General health risk assessment standards and preventive measures to be taken by sanitation service were presented in scope of: – evaluation of cyanobacteria bloom occurrence in bathing sites / water bodies, – procedures in case of cyanobacteria bloom, including health risk assessment and decision making process to protect users’ health at bathing sites, – preventive measures, to be taken in case of cyanobacteria bloom occurrence in bathing sites and basins, where bathing sites are located.

Phytoplankton bloom and subpolar gyre induced dynamics in the North Atlantic

DEFF Research Database (Denmark)

Ferreira, Ana Sofia; Hátún, H.; Counillon, F.

Several hypotheses have been promoted for phytoplankton bloom onset in the North Atlantic. First we show that the bloom dynamics in the northeastern corner stand out from the rest of the subpolar Atlantic, and thus warrants focused attention. We hypothesized that, for this region, late and weak...... blooms are expected in years of a strong subpolar gyre, i.e. strong atmospheric forcing, and cold and low saline conditions. We apply novel phenology algorithms to satellite ocean colour data, and analyse the outcome together with the subpolar gyre index. We find that the relationship between the bloom...

Is iron a limiting factor of Nodularia spumigena blooms?

Directory of Open Access Journals (Sweden)

Lidia Paczuska

2003-12-01

Full Text Available It is well known that a deficiency of iron, a trace element essential to every living organism, limits the growth of algae and cyanobacteria. Nodularia spumigena Mertens is a blue-green algae species inhabiting the Baltic region that often forms toxic blooms.     The aim of the study was to assess the growth of the toxic cyanobacteria with respect to iron bioavailability. The measured growth parameters were the numbers of cells (optical density, chlorophyll a and pheopigment a concentrations. The iron concentrations used ranged from 10-7 to 10-4 mol dm-3. Under iron stress conditions (<5 × 10-7 mol dm-3, growth inhibition, gradual pigment decay and cell mortality were observed. However, enriching the medium with complexing factors like citric acid and EDTA significantly stimulated the growth rate and chlorophyll a production. The citric acid - EDTA - Fe (5 × 10-7 mol dm-3 complex was demonstrably effective in stimulating the rate of cell division. Starting with 10-6 mol dm-3, the higher the iron(III concentration used in the media, the more intensive the growth of the cyanobacteria populations. This was most rapid in the presence of high iron concentrations (10-4 mol dm-3, regardless of the presence of complexing agents.     It appears that the growth of toxic cyanobacteria N. spumigena, and thus also its ability to form blooms, may well depend on iron availability in the environment.

High export via small particles before the onset of the North Atlantic spring bloom

DEFF Research Database (Denmark)

Giering, S. L. C.; Sanders, R.; Martin, A. P.

2016-01-01

Sinking organic matter in the North Atlantic Ocean transfers 1-3 Gt carbon yr-1 from the surface ocean to the interior. The majority of this exported material is thought to be in form of large, rapidly sinking particles that aggregate during or after the spring phytoplankton bloom. However, recent...

THE RESPONSE OF THE PERIPHYTIC DIATOM COMMUNITY TO ACID MINE DRAINAGE POLLUTION

Directory of Open Access Journals (Sweden)

Andreea Ciorba

2004-01-01

Full Text Available This paper proposes to relate the principal characteristics of diatom community (species richness, biodiversity, community biomass, diatom indices to the stress induced by acidification and high levels of metal. The study was done in a mine drainage affected area in Galicia (NW Spain by comparing periphytic diatom communities from polluted streams to ones in supposedly clean waters. The change in the dominant species was the clearest response to AMD pollution while species richness and diversity were sensitive only to high levels of pollution.

Growth inhibition of periphytic diatoms by methanol extracts of sponges and holothurians

Digital Repository Service at National Institute of Oceanography (India)

Mokashe, S.S.; Garg, A; Anil, A; Wagh, A

Crude methanol extracts of a holothurian Holothuria leucospilota, and two sponges Craniella sp. and Ircinia ramosa were tested for their inhibitory effects on the growth of two marine diatoms, Navicula subinflata and N. crucicula, by diatom plating...

Nature engineered diatom biosilica as drug delivery systems.

Science.gov (United States)

Uthappa, U T; Brahmkhatri, Varsha; Sriram, G; Jung, Ho-Young; Yu, Jingxian; Kurkuri, Nikita; Aminabhavi, Tejraj M; Altalhi, Tariq; Neelgund, Gururaj M; Kurkuri, Mahaveer D

2018-05-14

Diatoms, unicellular photosynthetic algae covered with siliceous cell wall, are also called frustule. These are the most potential naturally available materials for the development of cost-effective drug delivery systems because of their excellent biocompatibility, high surface area, low cost and ease of surface modification. Mesoporous silica materials such as MCM-41 and SBA-15 have been extensively used in drug delivery area. Their synthesis is challenging, time consuming, requires toxic chemicals and are energy intensive, making the entire process expensive and non-viable. Therefore, it is necessary to explore alternative materials. Surprisingly, nature has provided some exciting materials called diatoms; biosilica is one such a material that can be potentially used as a drug delivery vehicle. The present review focuses on different types of diatom species used in drug delivery with respect to their structural properties, morphology, purification process and surface functionalization. In this review, recent advances along with their limitations as well as the future scope to develop them as potential drug delivery vehicles are discussed. Copyright © 2018. Published by Elsevier B.V.

Static vs dynamic settlement and adhesion of diatoms to ship hull coatings.

Science.gov (United States)

Zargiel, Kelli A; Swain, Geoffrey W

2014-01-01

Many experiments utilize static immersion tests to evaluate the performance of ship hull coatings. These provide valuable data; however, they do not accurately represent the conditions both the hull and fouling organisms encounter while a ship is underway. This study investigated the effect of static and dynamic immersion on the adhesion and settlement of diatoms to one antifouling coating (BRA 640), four fouling-release coatings (Intersleek(®) 700, Intersleek(®) 900, Hempasil X3, and Dow Corning 3140) and one standard surface (Intergard(®) 240 Epoxy). Differences in community composition were observed between the static and dynamic treatments. Achnanthes longipes was present on all coatings under static immersion, but was not present under dynamic immersion. This was also found for diatoms in the genera Bacillaria and Gyrosigma. Melosira moniformis was the only diatom present under dynamic conditions, but not static conditions. Several common fouling diatom genera were present on panels regardless of treatment: Amphora, Cocconeis, Entomoneis Cylindrotheca, Licmophora, Navicula, Nitzschia, Plagiotropis, and Synedra. Biofilm adhesion, diatom abundance and diatom diversity were found to be significantly different between static and dynamic treatments; however, the difference was dependent on coating and sampling date. Several coatings (Epoxy, DC 3140 and IS 700) had significantly higher biofilm adhesion on dynamically treated panels on at least one of the four sampling dates, while all coatings had significantly higher diatom abundance on at least one sampling date. Diversity was significantly greater on static panels than dynamic panels for Epoxy, IS 700 and HX3 at least once during the sampling period. The results demonstrate how hydrodynamic stress will significantly influence the microfouling community. Dynamic immersion testing is required to fully understand how antifouling surfaces will respond to biofilm formation when subjected to the stresses experienced

Salmon mortalities associated with a bloom of Alexandrium ...

African Journals Online (AJOL)

Blue mussels Mytilus edulis analysed from areas affected by the bloom reached levels of 18 000ìg STX equivalents 100g–1 of tissue. As a result of the salmon mortalities, a project was initiated to establish a monitoring approach for harmful algal blooms to provide an early warning of potential events and to act as a tool for ...

Cyanobacterial blooms in stratified and destratified eutrophic reservoirs in semi-arid region of Brazil.

Science.gov (United States)

Dantas, Enio W; Moura, Ariadne N; Bittencourt-Oliveira, Maria do Carmo

2011-12-01

This study investigated the dynamics of cyanobacteria in two deep, eutrophic reservoirs in a semi-arid region of Brazil during periods of stratification and destratification. Four collections were carried out at each reservoir at two depths at three-month intervals. The following abiotic variables were analyzed: water temperature, dissolved oxygen, pH, turbidity, water transparency, total phosphorus, total dissolved phosphorus, orthophosphate and total nitrogen. Phytoplankton density was quantified for the determination of the biomass of cyanobacteria. The data were analyzed using CCA. Higher mean phytoplankton biomass values (29.8 mm(3).L(-1)) occurred in the period of thermal stratification. A greater similarity in the phytoplankton communities also occurred in this period and was related to the development of cyanobacteria, mainly Cylindrospermopsis raciborskii (>3.9 mm(3).L(-1)). During the period of thermal destratification, this species co-dominated the environment with Planktothrix agardhii, Geitlerinema amphibium, Microcystis aeruginosa and Merismopedia tenuissima, as well as with diatoms and phytoflagellates. Environmental instability and competition among algae hindered the establishment of blooms more during the mixture period than during the stratification period. Thermal changes in the water column caused by climatologic events altered other physiochemical conditions of the water, leading to changes in the composition and biomass of the cyanobacterial community in tropical reservoirs.

A salp bloom (Tunicata, Thaliacea) along the Apulian coast and in the Otranto Channel between March-May 2013.

Science.gov (United States)

Boero, Ferdinando; Belmonte, Genuario; Bracale, Roberta; Fraschetti, Simonetta; Piraino, Stefano; Zampardi, Serena

2013-01-01

Between March-May 2013 a massive Salpa maxima bloom was recorded by a citizen science study along the Ionian and Adriatic coast of the Salento peninsula (Italy). Citizen records were substantiated with field inspections along the coast and during an oceanographic campaign in the Otranto Channel. Salps clogged nets, impairing fishing activities along the coast. Swimmers were scared by the gelatinous appearance of the salps, and thought they were jellyfish. At the end of the bloom the dead bodies of the colonies, that were up to 6-7 m long, were accumulated along the coast and stirred by the waves, forming foams along dozens of kilometers of coast. The bloom also occurred at the Tremiti Islands, north of the Gargano Peninsula. The possible impacts of such events on the  functioning of pelagic systems are discussed.

Environmental Chemistry and Chemical Ecology of "Green Tide" Seaweed Blooms.

Science.gov (United States)

Van Alstyne, Kathryn L; Nelson, Timothy A; Ridgway, Richard L

2015-09-01

Green tides are large growths or accumulations of green seaweeds that have been increasing in magnitude and frequency around the world. Because green tides consist of vast biomasses of algae in a limited area and are often seasonal or episodic, they go through periods of rapid growth in which they take up large amounts of nutrients and dissolved gases and generate bioactive natural products that may be stored in the plants, released into the environment, or broken down during decomposition. As a result of the use and production of inorganic and organic compounds, the algae in these blooms can have detrimental impacts on other organisms. Here, we review some of the effects that green tides have on the chemistry of seawater and the effects of the natural products that they produce. As blooms are developing and expanding, algae in green tides take up inorganic nutrients, such as nitrate and ortho-phosphate, which can limit their availability to other photosynthetic organisms. Their uptake of dissolved inorganic carbon for use in photosynthesis can cause localized spikes in the pH of seawater during the day with concomitant drops in the pH at night when the algae are respiring. Many of the algae that form green-tide blooms produce allelopathic compounds, which are metabolites that affect other species. The best documented allelopathic compounds include dimethylsulfoniopropionate (DMSP), dopamine, and reactive oxygen species (ROS) and their breakdown products. DMSP and dopamine are involved in defenses against herbivores. Dopamine and ROS are released into seawater where they can be allelopathic or toxic to other organisms. Thus, these macroalgal blooms can have harmful effects on nearby organisms by altering concentrations of nutrients and dissolved gas in seawater and by producing and releasing allelopathic or toxic compounds. © The Author 2015. Published by Oxford University Press on behalf of the Society for Integrative and Comparative Biology. All rights reserved