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Sample records for blastochloris viridis heterodimer

  1. Structural and spectropotentiometric analysis of Blastochloris viridis heterodimer mutant reaction center

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    Ponomarenko, Nina S.; Li, Liang; Marino, Antony R.; Tereshko, Valentina; Ostafin, Agnes; Popova, Julia A.; Bylina, Edward J.; Ismagilov, Rustem F.; Norris, Jr., James R.; (UC); (Utah)

    2010-07-22

    Heterodimer mutant reaction centers (RCs) of Blastochloris viridis were crystallized using microfluidic technology. In this mutant, a leucine residue replaced the histidine residue which had acted as a fifth ligand to the bacteriochlorophyll (BChl) of the primary electron donor dimer M site (HisM200). With the loss of the histidine-coordinated Mg, one bacteriochlorophyll of the special pair was converted into a bacteriopheophytin (BPhe), and the primary donor became a heterodimer supermolecule. The crystals had dimensions 400 x 100 x 100 {micro}m, belonged to space group P4{sub 3}2{sub 1}2, and were isomorphous to the ones reported earlier for the wild type (WT) strain. The structure was solved to a 2.5 {angstrom} resolution limit. Electron-density maps confirmed the replacement of the histidine residue and the absence of Mg. Structural changes in the heterodimer mutant RC relative to the WT included the absence of the water molecule that is typically positioned between the M side of the primary donor and the accessory BChl, a slight shift in the position of amino acids surrounding the site of the mutation, and the rotation of the M194 phenylalanine. The cytochrome subunit was anchored similarly as in the WT and had no detectable changes in its overall position. The highly conserved tyrosine L162, located between the primary donor and the highest potential heme C{sub 380}, revealed only a minor deviation of its hydroxyl group. Concomitantly to modification of the BChl molecule, the redox potential of the heterodimer primary donor increased relative to that of the WT organism (772 mV vs. 517 mV). The availability of this heterodimer mutant and its crystal structure provides opportunities for investigating changes in light-induced electron transfer that reflect differences in redox cascades.

  2. New insights into the structure of the reaction centre from Blastochloris viridis: evolution in the laboratory.

    Science.gov (United States)

    Roszak, Aleksander W; Moulisová, Vladimíra; Reksodipuro, Adhie D P; Gardiner, Alastair T; Fujii, Ritsuko; Hashimoto, Hideki; Isaacs, Neil W; Cogdell, Richard J

    2012-02-15

    Newly determined crystal structures of the photosynthetic RC (reaction centre) from two substrains of the non-sulfur purple bacterium Blastochloris viridis strain DSM 133, together with analysis of their gene sequences, has revealed intraspecies evolutionary changes over a period of 14 years. Over 100 point mutations were identified between these two substrains in the four genes encoding the protein subunits of the RC, of which approximately one-fifth resulted in a total of 16 amino acid changes. The most interesting difference was in the M subunit where the change from a leucine residue to glycine in the carotenoid-binding pocket allowed NS5 (1,2-dihydroneurosporene) to adopt a more sterically favoured conformation, similar to the carotenoid conformation found in other related RCs. The results of the present study, together with a high rate of mutations in laboratory bacterial cultures described recently, suggest that bacteria evolve faster than has been generally recognized. The possibility that amino acid changes occur within protein sequences, without exhibiting any immediately observable phenotype, should be taken into account in studies that involve long-term continuous growth of pure bacterial cultures. The Blc. viridis RC is often studied with sophisticated biophysical techniques and changes such as those described here may well affect their outcome. In other words, there is a danger that laboratory-to-laboratory variation could well be due to different groups not realising that they are actually working with slightly different proteins. A way around this problem is suggested.

  3. [Transcriptome analysis of Dunaliella viridis].

    Science.gov (United States)

    Zhu, Shuaiqi; Gong, Yifu; Hang, Yuqing; Liu, Hao; Wang, Heyu

    2015-08-01

    In order to understand the gene information, function, haloduric pathway (glycerolipid metabolism) and related key genes for Dunaliella viridis, we used Illumina HiSeqTM 2000 high-throughput sequencing technology to sequence its transcriptome. Trinity soft was used to assemble the data to form transcripts. Based on the Clusters of Orthologous Groups (COG), Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG ) databases, we carried out functional annotation and classification, pathway annotation, and the opening reading fragment (ORF) sequence prediction of transcripts. The key genes in the glycerolipid metabolism were analyzed. The results suggested that 81,593 transcripts were found, and 77,117 ORF sequences were predicted, accounting for 94.50% of all transcripts. COG classification results showed that 16,569 transcripts were assigned to 24 categories. GO classification annotated 76,436 transcripts. The number of transcripts for biologcial processes was 30,678, accounting for 40.14% of all transcripts. KEGG pathway analysis showed that 26,428 transcripts were annotated to 317 pathways, and 131 pathways were related to metabolism, accounting for 41.32% of all annotated pathways. Only one transcript was annotated as coding the key enzyme dihydroxyacetone kinase involved in the glycerolipid pathway. This enzyme could be related to glycerol biosynthesis under salt stress. This study further improved the gene information and laid the foundation of metabolic pathway research for Dunaliella viridis. PMID:26266786

  4. Secondary peritonitis caused by Streptomyces viridis

    NARCIS (Netherlands)

    P. Datta (Priya); S. Arora (Shilpa); A. Jain (Ashok); J. Chander (Jagdish); W.W.J. van de Sande (Wendy)

    2012-01-01

    textabstractStreptomyces organisms are soil inhabitants rarely causing nonmycetomic infections. We describe a case of secondary peritonitis caused by Streptomyces viridis in a chronic alcoholic patient who presented with fever, abdominal distension, and pain in the abdomen. The most likely source of

  5. Spike-dip transformation of Setaria viridis.

    Science.gov (United States)

    Saha, Prasenjit; Blumwald, Eduardo

    2016-04-01

    Traditional method of Agrobacterium-mediated transformation through the generation of tissue culture had limited success for Setaria viridis, an emerging C4 monocot model. Here we present an efficient in planta method for Agrobacterium-mediated genetic transformation of S. viridis using spike dip. Pre-anthesis developing spikes were dipped into a solution of Agrobacterium tumefaciens strain AGL1 harboring the β-glucuronidase (GUS) reporter gene driven by the cauliflower mosaic virus 35S (CaMV35S) promoter to standardize and optimize conditions for transient as well as stable transformations. A transformation efficiency of 0.8 ± 0.1% was obtained after dipping of 5-day-old S3 spikes for 20 min in Agrobacterium cultures containing S. viridis spike-dip medium supplemented with 0.025% Silwet L-77 and 200 μm acetosyringone. Reproducibility of this method was demonstrated by generating stable transgenic lines expressing β-glucuronidase plus (GUSplus), green fluorescent protein (GFP) and Discosoma sp. red fluorescent protein (DsRed) reporter genes driven by either CaMV35S or intron-interrupted maize ubiquitin (Ubi) promoters from three S. viridis genotypes. Expression of these reporter genes in transient assays as well as in T1 stable transformed plants was monitored using histochemical, fluorometric GUS activity and fluorescence microscopy. Molecular analysis of transgenic lines revealed stable integration of transgenes into the genome, and inherited transgenes expressed in the subsequent generations. This approach provides opportunities for the high-throughput transformation and potentially facilitates translational research in a monocot model plant. PMID:26932666

  6. Intramolecular Singlet Fission in Oligoacene Heterodimers.

    Science.gov (United States)

    Sanders, Samuel N; Kumarasamy, Elango; Pun, Andrew B; Steigerwald, Michael L; Sfeir, Matthew Y; Campos, Luis M

    2016-03-01

    We investigate singlet fission (SF) in heterodimers comprising a pentacene unit covalently bonded to another acene as we systematically vary the singlet and triplet pair energies. We find that these energies control the SF process, where dimers undergo SF provided that the resulting triplet pair energy is similar or lower in energy than the singlet state. In these systems the singlet energy is determined by the lower-energy chromophore, and the rate of SF is found to be relatively independent of the driving force. However, triplet pair recombination in these heterodimers follows the energy gap law. The ability to tune the energies of these materials provides a key strategy to study and design new SF materials-an important process for third-generation photovoltaics. PMID:26836223

  7. The formation of heterodimers by vancomycin group antibiotics

    DEFF Research Database (Denmark)

    Staroske, T; O'Brien, DP; Jørgensen, Thomas J. D.;

    2000-01-01

    The formation of heterodimers in mixtures of glycopeptide antibiotics has been detected by electrospray ionization mass spectrometry (ESI-MS), and dimerization constants have been determined. By using NMR spectroscopy, it has been shown that these heterodimers indeed exist in aqueous solution. Th...

  8. Seasonal variation of oxidative biomarkers in gills and digestive gland of green-lipped mussel Perna viridis from Arabian Sea

    Digital Repository Service at National Institute of Oceanography (India)

    Verlecar, X.N.; Jena, K.B.; Chainy, G.B.N.

    in gills and digestive gland of P. viridis during February, May, August and November. The present study reveals two important aspects regarding the antioxidant defence status of tissues of P. viridis. Firstly, antioxidant capacity of tissues of P. viridis...

  9. Ontogenetic shift in response to prey-derived chemical cues in prairie rattlesnakes Crotalus viridis viridis

    Institute of Scientific and Technical Information of China (English)

    Anthony J.SAVIOLA; David CHISZAR; Stephen P.MACKESSY

    2012-01-01

    Snakes often have specialized diets that undergo a shift from one prey type to another depending on the life stage of the snake.Crotalus viridis viridis (prairie rattlesnake) takes different prey at different life stages,and neonates typically prey on ectotherms,while adults feed almost entirely on small endotherms.We hypothesized that elevated rates of tongue flicking to chemical stimuli should correlate with particular prey consumed,and that this response shifts from one prey type to another as individuals age.To examine if an ontogenetic shift in response to chemical cues occurred,we recorded the rate of tongue flicking for 25 neonate,20 subadult,and 20 adult (average SVL=280.9,552,789.5 mm,respectively) wild-caught C.v.viridis to chemical stimuli presented on a cotton-tipped applicator; water-soluble cues from two ectotherms (prairie lizard,Sceloporus undulatus,and house gecko,Hemidactylusfrenatus),two endotherms (deer mouse,Peromyscus maniculatus and lab mouse,Mus musculus),and water controls were used.Neonates tongue flicked significantly more to chemical cues of their common prey,S.undulatus,than to all other chemical cues; however,the response to this lizard's chemical cues decreased in adult rattlesnakes.Subadults tongue flicked with a higher rate of tongue flicking to both S.undulatus and P.maniculatus than to all other treatments,and adults tongue flicked significantly more to P.maniculatus than to all other chemical cues.In addition,all three sub-classes demonstrated a greater response for natural prey chemical cues over chemical stimuli of prey not encountered in the wild (M.musculus and H.frenatus).This shift in chemosensory response correlated with the previously described ontogenetic shifts in C.v.viridis diet.Because many vipers show a similar ontogenetic shift in diet and venom composition,we suggest that this shift in prey cue discrimination is likely a general phenomenon among viperid snakes.

  10. Population dynamics and diapause response of the springtail pest Sminthurus viridis (Collembola: Sminthuridae) in southeastern Australia.

    Science.gov (United States)

    Roberts, John M K; Umina, Paul A; Hoffmann, Ary A; Weeks, Andrew R

    2011-04-01

    The springtail, Sminthurus viridis (L.) (Collembola: Sminthuridae), is an important agricultural pest across southern Australia. We investigated the seasonal abundance patterns and summer diapause response of S. viridis in southeastern Australia by using field and shadehouse (a greenhouse that offers seedlings shade) experiments. Seasonal activity patterns of S. viridis were largely consistent with previous studies, with the pest active from autumn to spring. In addition, the timing and pattern of the summer-diapausing egg stage was established, with multiple generations probably producing diapause eggs. A strong relationship between soil moisture and temperature with autumn emergence also was observed. These results suggest that S. viridis autumn pest pressure can be predicted and indicate that late-season spraying strategies currently used for a sympatric agricultural pest are unlikely to be as effective against S. viridis. PMID:21510194

  11. Diversity in plants and other Collembola ameliorate impacts of Sminthurus viridis on plant community structure

    Science.gov (United States)

    Barker, Gary M.

    2006-05-01

    Five experiments investigated the importance of herbivory by Sminthurus viridis in structuring botanical composition in developing grasslands, and how these effects may be modified by diversity in collembolan and plant species. Differential susceptibility to S. viridis feeding was demonstrated in 23 dicotyledonous and three monocotyledonous plants assayed as seedlings at the first true leaf stage. The composition of seedling communities developing from natural and artificially constructed soil seed banks varied with the level of S. viridis infestation, with plant species least susceptible to herbivory making the greatest contribution to plant biomass. The combined effect of herbivory by S. viridis and Bourletiella hortensis on Trifolium repens biomass was shown to be less than the effect of S. viridis alone, indicating competitive interference. The adverse effects of herbivory by S. viridis on T. repens biomass was reduced by increased diversity of plants growing in association with the legume, and the presence of four non-herbivorous arthropleonan Collembola. S. viridis was shown to reduce seedling numbers, species diversity and biomass in communities developing from the soil seed bank, but the presence of non-herbivorous arthropleonan species reduced the effect of S. viridis. The experiments demonstrate the potential for herbivory by S. viridis to significantly alter species composition in developing grassland communities. However, interactions with collembolan and plant species profoundly modified S. viridis herbivory impacts, either by reducing feeding intensity or enhancing plant growth. These results highlight the fact that data from simple, synthetic systems may be poor predictors of herbivory impacts under field conditions where more complex species interactions occur.

  12. Comprehensive EST analysis of the symbiotic sea anemone, Anemonia viridis

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    Deleury Emeline

    2009-07-01

    Full Text Available Abstract Background Coral reef ecosystems are renowned for their diversity and beauty. Their immense ecological success is due to a symbiotic association between cnidarian hosts and unicellular dinoflagellate algae, known as zooxanthellae. These algae are photosynthetic and the cnidarian-zooxanthellae association is based on nutritional exchanges. Maintenance of such an intimate cellular partnership involves many crosstalks between the partners. To better characterize symbiotic relationships between a cnidarian host and its dinoflagellate symbionts, we conducted a large-scale EST study on a symbiotic sea anemone, Anemonia viridis, in which the two tissue layers (epiderm and gastroderm can be easily separated. Results A single cDNA library was constructed from symbiotic tissue of sea anemones A. viridis in various environmental conditions (both normal and stressed. We generated 39,939 high quality ESTs, which were assembled into 14,504 unique sequences (UniSeqs. Sequences were analysed and sorted according to their putative origin (animal, algal or bacterial. We identified many new repeated elements in the 3'UTR of most animal genes, suggesting that these elements potentially have a biological role, especially with respect to gene expression regulation. We identified genes of animal origin that have no homolog in the non-symbiotic starlet sea anemone Nematostella vectensis genome, but in other symbiotic cnidarians, and may therefore be involved in the symbiosis relationship in A. viridis. Comparison of protein domain occurrence in A. viridis with that in N. vectensis demonstrated an increase in abundance of some molecular functions, such as protein binding or antioxidant activity, suggesting that these functions are essential for the symbiotic state and may be specific adaptations. Conclusion This large dataset of sequences provides a valuable resource for future studies on symbiotic interactions in Cnidaria. The comparison with the closest

  13. Excitation dynamics and relaxation in a molecular heterodimer

    Energy Technology Data Exchange (ETDEWEB)

    Balevicius, V.; Gelzinis, A. [Department of Theoretical Physics, Faculty of Physics, Vilnius University, Sauletekio Avenue 9, build. 3, LT-10222 Vilnius (Lithuania); Center for Physical Sciences and Technology, Institute of Physics, Savanoriu Avenue 231, LT-02300 Vilnius (Lithuania); Abramavicius, D. [Department of Theoretical Physics, Faculty of Physics, Vilnius University, Sauletekio Avenue 9, build. 3, LT-10222 Vilnius (Lithuania); State Key Laboratory of Supramolecular Structure and Materials, Jilin University, 2699 Qianjin Street, Changchun 130012 (China); Mancal, T. [Faculty of Mathematics and Physics, Charles University in Prague, Ke Karlovu 5, CZ-121 16 Prague 2 (Czech Republic); Valkunas, L., E-mail: leonas.valkunas@ff.vu.lt [Department of Theoretical Physics, Faculty of Physics, Vilnius University, Sauletekio Avenue 9, build. 3, LT-10222 Vilnius (Lithuania); Center for Physical Sciences and Technology, Institute of Physics, Savanoriu Avenue 231, LT-02300 Vilnius (Lithuania)

    2012-08-24

    Highlights: Black-Right-Pointing-Pointer Dynamics of excitation within a heterogenous molecular dimer. Black-Right-Pointing-Pointer Excited states can be swapped due to different reorganization energies of monomers. Black-Right-Pointing-Pointer Conventional excitonic basis becomes renormalized due to interaction with the bath. Black-Right-Pointing-Pointer Relaxation is independent of mutual positioning of monomeric excited states. -- Abstract: The exciton dynamics in a molecular heterodimer is studied as a function of differences in excitation and reorganization energies, asymmetry in transition dipole moments and excited state lifetimes. The heterodimer is composed of two molecules modeled as two-level systems coupled by the resonance interaction. The system-bath coupling is taken into account as a modulating factor of the molecular excitation energy gap, while the relaxation to the ground state is treated phenomenologically. Comparison of the description of the excitation dynamics modeled using either the Redfield equations (secular and full forms) or the Hierarchical quantum master equation (HQME) is demonstrated and discussed. Possible role of the dimer as an excitation quenching center in photosynthesis self-regulation is discussed. It is concluded that the system-bath interaction rather than the excitonic effect determines the excitation quenching ability of such a dimer.

  14. Succession on subalpine placer mine spoil: Effects of revegetation with Alnus viridis, Alaska, U.S.A.

    Science.gov (United States)

    Densmore, R.V.

    2005-01-01

    Alnus viridis seedlings were planted on placer mine spoil in an Alaskan subalpine watershed to bypass a seedling establishment bottleneck for A. viridis, and to evaluate the interaction between A. viridis and the dominant riparian woody plants, Salix alaxensis and Populus balsamifera. The study area was divided into 11 replicate blocks, each on a homogeneous recontoured spoil pile. Blocks were divided into two 0.01 ha plots, and treatments without (control) and with 84 planted A. viridis seedlings were randomly assigned to plots. After 10 years, the Alnus treatment had a dense stand of A. viridis 1-2 m tall, while the control had fewer, smaller seedlings. Compared to the control, planted A. viridis had a neutral effect on S. alaxensis and inhibited P. balsamifera at the seedling establishment stage, but facilitated the growth of established plants of both species, with many plants overtopping the A. viridis canopy. Compared to the control, S. alaxensis plants in the Alnus treatment had higher levels of foliar N and ??15N values closer to those of A. viridis, indicating the importance of N fixation by A. viridis. Planting A. viridis accelerated the rate of succession by stimulating growth of woody dominants. ?? 2005 Regents of the University of Colorado.

  15. Biochemical markers of oxidative stress in Perna viridis exposed to mercury and temperature

    Digital Repository Service at National Institute of Oceanography (India)

    Verlecar, X.N.; Jena, K.B.; Chainy, G.B.N.

    Oxidative damage and antioxidant properties have been studied in Perna viridis subjected to short-term exposure to Hg along with temperature (72 h) and long-term temperature exposures (14 days) as pollution biomarkers. The elevated thiobarbituric...

  16. Application of oxidative stress indices in natural populations of Perna viridis as biomarker of environmental pollution

    Digital Repository Service at National Institute of Oceanography (India)

    Jena, K.B.; Verlecar, X.N.; Chainy, G.B.N.

    Oxidative stress indices were measured in gills and digestive glands of Perna viridis collected from three coastal locations in Goa i.e., Bambolim, Marmugao Harbour and Malim. In addition to lipid peroxidation, the activities of antioxidant enzymes...

  17. Antioxidative potential of Perna viridis and its protective role against ROS induced lipidperoxidation and protein carbonyl

    Digital Repository Service at National Institute of Oceanography (India)

    Jena, K.B.; Jagtap, T.G.; Verlecar, X.N.

    The antioxidant potential of methanol extracts of green-lipped mussel (Perna viridis) were evaluated using tests such as 2,2-diphenyl-1-picrylhydrazyl (DPPH) assay, reducing potential, scavenging capacity of reactive oxygen species (ROS...

  18. A new diketopiperazine heterodimer from an endophytic fungus Aspergillus niger.

    Science.gov (United States)

    Li, Xiao-Bin; Li, Yue-Lan; Zhou, Jin-Chuan; Yuan, Hui-Qing; Wang, Xiao-Ning; Lou, Hong-Xiang

    2015-01-01

    One new diketopiperazine heterodimer, asperazine A (1), and eight known compounds, asperazine (2), cyclo(d-Phe-l-Trp) (3), cyclo(l-Trp-l-Trp) (4), 4-(hydroxymethyl)-5,6-dihydro-pyran-2-one (5), walterolactone A (6), and campyrones A-C (7-9), were isolated from an endophytic fungus Aspergillus niger. Their structures were determined unequivocally on the basis of extensive spectroscopic data analysis. This is the first report of the presence of compound 3 as a natural product. Cytotoxicity test against human cancer cell lines PC3, A2780, K562, MBA-MD-231, and NCI-H1688 revealed that compounds 1 and 2 had weak activities.

  19. Synergistic transmembrane alignment of the antimicrobial heterodimer PGLa/magainin.

    Science.gov (United States)

    Tremouilhac, Pierre; Strandberg, Erik; Wadhwani, Parvesh; Ulrich, Anne S

    2006-10-27

    The antimicrobial activity of amphipathic alpha-helical peptides is usually attributed to the formation of pores in bacterial membranes, but direct structural information about such a membrane-bound state is sparse. Solid state (2)H-NMR has previously shown that the antimicrobial peptide PGLa undergoes a concentration-dependent realignment from a surface-bound S-state to a tilted T-state. The corresponding change in helix tilt angle from 98 to 125 degrees was interpreted as the formation of PGLa/magainin heterodimers residing on the bilayer surface. Under no conditions so far, has an upright membrane-inserted I-state been observed in which a transmembrane helix alignment would be expected. Here, we have demonstrated that PGLa is able to assume such an I-state in a 1:1 mixture with magainin 2 at a peptide-to-lipid ratio as low as 1:100 in dimyristoylphosphatidylcholine/dimyristoylphosphatidylglycerol model membranes. This (2)H-NMR analysis is based on seven orientational constraints from Ala-3,3,3-d(3) substituted in a non-perturbing manner for four native Ala residues as well as two Ile and one Gly. The observed helix tilt of 158 degrees is rationalized by the formation of heterodimers. This structurally synergistic effect between the two related peptides from the skin of Xenopus laevis correlates very well with their known functional synergistic mode of action. To our knowledge, this example of PGLa is the first case where an alpha-helical antimicrobial peptide is directly shown to assume a transmembrane state that is compatible with the postulated toroidal wormhole pore structure. PMID:16877761

  20. Comparative Studies on Uptake Pathway of Cadmium by Perna viridis

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Experiments were designed to expose the filter-feeding bivalve Perna viridis to different Cd-contaminated water environments in order to compare the different pathways through which Cd is accumulated. Results show that mussels can accumulate Cd through seawater, food, sediment and suspended particle pathways in a short period of time. Mussels uptake of Cd through the seawater pathway reaches the highest concentration approximately 3 and 9 times larger than through the algae and sediment pathways respectively after 7 d. This indicates that the Cd-accumulation through seawater is most efficient. Results also indicate that the uptake directly through contaminated algae, particles or sediments ingested by mussels is less important when compared with the uptake of Cd by mussels through the seawater pathway. Metal uptake pathways and mechanisms of bioaccumulation by marine bivalve are also discussed in this paper.

  1. SALT EFFECTS ON SWARMERS OF DUNALIELLA VIRIDIS TEOD.

    Science.gov (United States)

    Baas-Becking, L G

    1931-07-20

    1. Dunaliella viridis Teodoresco thrives equally well in solutions of NaCl 1 to 4 mol and pH 6 to 9. 2. The organism is sensitive to calcium and magnesium, especially in acid medium. 3. Calcium and magnesium are antagonistic. In a molar solution of NaCl the antagonistic relation Mg:Ca is 4 to 5. In a 4 molar solution of NaCl the proportion becomes many times as great (20:1). 4. Although the strains used in this investigation did not occur in sea water concentrates, the increase in the antagonistic ratio Mg:Ca in which they can live closely paralleled the changes in this ratio which take place when sea water evaporates. 5. The other organisms which occurred in the cultures each show a specific relation to Ca and Mg. 6. The size of the cells of Dunaliella does not decrease with increasing NaCl content. PMID:19872621

  2. IDENTIFICATION CHALLENGES IN EXAMINATION OF COMMERCIAL PLANT MATERIAL OF PSYCHOTRIA VIRIDIS.

    Science.gov (United States)

    Kowalczuk, Anna P; Łozak, Anna; Bachliński, Robert; Duszyński, Anna; Sakowska, Joanna; Zjawiony, Jordan K

    2015-01-01

    Psychoria viridis (chacruna) is a hallucinogenic plant with psychoactive properties associated with the presence of N,N-dimethyltryptamine (DMT). This species is primarily known as an ingredient of the beverage Ayahuasca, but dry leaves are also smoked by recreational users. The plant is controlled in Poland and France and its proper identification poses many challenges due to the fact that genus Psychotria is relatively large and there are other species that are easily confused with chacruna. The aim of the present work was to develop an effective authentication procedure for the dried and shredded leaves of P. viridis, to be used in comparison of chemical and botanical characteristics of its commercial products. Dried leaves of P. viridis originating from Brazil, Peru and Hawaii were purchased from Internet providers. For DMT identification, thin layer chromatography (TLC) and high performance liquid chromatography (HPLC) methods have been elaborated, validated and applied. In order to clarify the existing differences among samples, chemometric methods have been used. Botanical features and the gas chromatography tandem mass spectrometry (GC-MS) chromatograms have been analyzed using hierarchical cluster analysis (HCA). Our studies revealed significant variety among plant material marketed as P. viridis. Grouping of samples based on their micromorphology features and GC-MS results did not correspond well with the presence of DMT. Based on our results an indisputable identification of dried specimens as P. viridis is very problematic. It is necessary to postulate changes in legislation regarding regulation of P. viridis and replace it with DMT as controlled substance.

  3. Interferência interespecífica entre Amaranthus hybridus L. e Amaranthus viridis L. Interspecific interference between Amaranthus hybridus L. and Amaranthus viridis L.

    Directory of Open Access Journals (Sweden)

    Angela Maria Maluf

    1999-05-01

    Full Text Available O objetivo deste trabalho foi estudar a interferência interespecífica entre duas espécies de Amaranthus -- A. viridis e A. hybridus ¾, esta última com dois biótipos distintos (verde e roxo; ambas ocorriam associadas em dois locais. Nas populações de cada local foram feitos ensaios de substituição independentes, em vasos, nos quais observou-se que as populações que germinam mais prontamente são as que vencem em competição, ou seja, se estabelecem e produzem maior número de sementes. Houve tendência de A. hybridus (tipo verde dominar tanto A. hybridus (tipo roxo como A. viridis, e de A. hybridus (tipo roxo dominar A. viridis. Em cultivo misto, houve casos em que as espécies estavam competindo pelos mesmos recursos, ou explorando recursos diferentes do ambiente, ou mesmo com antagonismo mútuo.The objective of this paper was to study the interspecific interference between two Amaranthus species -- A. viridis and A. hybridus --, the latter with two distinct biotypes (green and purple; both species ocurred in two localities. In the populations of each of the locations, some independent substitution trials were made in pots, and it could be concluded that the populations that germinate more readily are those which are superior in competition i.e., those that establish themselves and produce the largest number of seeds. There was a tendency for A. hybridus (green biotype to dominate both A. hybridus (purple biotype and A. viridis, and for A. hybridus (purple biotype to dominate A. viridis. In mixed stands, there were cases where the species were competing for the same resources, cases where they were exploiting different environmental resources, and even cases of mutual antagonism.

  4. Drosophila Stathmins Bind Tubulin Heterodimers with High and Variable Stoichiometries*

    Science.gov (United States)

    Lachkar, Sylvie; Lebois, Marion; Steinmetz, Michel O.; Guichet, Antoine; Lal, Neha; Curmi, Patrick A.; Sobel, André; Ozon, Sylvie

    2010-01-01

    In vertebrates, stathmins form a family of proteins possessing two tubulin binding repeats (TBRs), which each binds one soluble tubulin heterodimer. The stathmins thus sequester two tubulins in a phosphorylation-dependent manner, providing a link between signal transduction and microtubule dynamics. In Drosophila, we show here that a single stathmin gene (stai) encodes a family of D-stathmin proteins. Two of the D-stathmins are maternally deposited and then restricted to germ cells, and the other two are detected in the nervous system during embryo development. Like in vertebrates, the nervous system-enriched stathmins contain an N-terminal domain involved in subcellular targeting. All the D-stathmins possess a domain containing three or four predicted TBRs, and we demonstrate here, using complementary biochemical and biophysical methods, that all four predicted TBR domains actually bind tubulin. D-stathmins can indeed bind up to four tubulins, the resulting complex being directly visualized by electron microscopy. Phylogenetic analysis shows that the presence of regulated multiple tubulin sites is a conserved characteristic of stathmins in invertebrates and allows us to predict key residues in stathmin for the binding of tubulin. Altogether, our results reveal that the single Drosophila stathmin gene codes for a stathmin family similar to the multigene vertebrate one, but with particular tubulin binding properties. PMID:20145240

  5. Drosophila stathmins bind tubulin heterodimers with high and variable stoichiometries.

    Science.gov (United States)

    Lachkar, Sylvie; Lebois, Marion; Steinmetz, Michel O; Guichet, Antoine; Lal, Neha; Curmi, Patrick A; Sobel, André; Ozon, Sylvie

    2010-04-01

    In vertebrates, stathmins form a family of proteins possessing two tubulin binding repeats (TBRs), which each binds one soluble tubulin heterodimer. The stathmins thus sequester two tubulins in a phosphorylation-dependent manner, providing a link between signal transduction and microtubule dynamics. In Drosophila, we show here that a single stathmin gene (stai) encodes a family of D-stathmin proteins. Two of the D-stathmins are maternally deposited and then restricted to germ cells, and the other two are detected in the nervous system during embryo development. Like in vertebrates, the nervous system-enriched stathmins contain an N-terminal domain involved in subcellular targeting. All the D-stathmins possess a domain containing three or four predicted TBRs, and we demonstrate here, using complementary biochemical and biophysical methods, that all four predicted TBR domains actually bind tubulin. D-stathmins can indeed bind up to four tubulins, the resulting complex being directly visualized by electron microscopy. Phylogenetic analysis shows that the presence of regulated multiple tubulin sites is a conserved characteristic of stathmins in invertebrates and allows us to predict key residues in stathmin for the binding of tubulin. Altogether, our results reveal that the single Drosophila stathmin gene codes for a stathmin family similar to the multigene vertebrate one, but with particular tubulin binding properties. PMID:20145240

  6. Genetic characterization of Perna viridis L. in peninsular Malaysia using microsatellite markers

    Indian Academy of Sciences (India)

    C. C. Ong; K. Yusoff; C. K. Yap; S. G. Tan

    2009-08-01

    A total of 19 polymorphic microsatellite loci were used to analyse levels of genetic variation for 10 populations of Perna viridis L. collected from all over peninsular Malaysia. The populations involved in this study included Pulau Aman in Penang, Tanjung Rhu in Kedah, Bagan Tiang in Perak, Pulau Ketam in Selangor, Muar, Parit Jawa, Pantai Lido and Kampung Pasir Puteh in Johore, and Kuala Pontian and Nenasi in Pahang state. The number of alleles per locus ranged from two to seven, with an average of 3.1. Heterozygote deficiencies were observed across all the 10 populations. Characterization of the populations revealed that local populations of P. viridis in peninsular Malaysia were genetically similar enough to be used as a biomonitoring agent for heavy metal contamination in the Straits of Malacca. Cluster analysis grouped the P. viridis populations according to their geographical distributions with the exception of Parit Jawa. The analysis also revealed that P. viridis from the northern parts of peninsular Malaysia were found to be the most distant populations among the populations of mussels investigated and P. viridis from the eastern part of peninsular Malaysia were closer to the central and southern populations than to the northern populations.

  7. Setaria viridis floral-dip: A simple and rapid Agrobacterium-mediated transformation method

    Directory of Open Access Journals (Sweden)

    Polyana Kelly Martins

    2015-06-01

    Full Text Available Setaria viridis was recently described as a new monocotyledonous model species for C4 photosynthesis research and genetic transformation. It has biological attributes (rapid life cycle, small genome, diploid, short stature and simple growth requirements that make it suitable for use as a model plant. We report an alternative method of S. viridis transformation using floral dip to circumvent the necessity of tissue culture phase for transgenic plant regeneration. S. viridis spikes at boot stage were selected to be immersed in Agrobacterium suspension. T1 seeds could be identified in 1.5–2 months after floral dipping. We demonstrated through molecular analysis and RFP expression that seeds and resulting plants from dipped inflorescences were transformed. Our results suggest the feasibility of S. viridis floral dip transformation as a time-saving and cost-effective compared with traditional methods. To our knowledge, this is the first report using floral dip in S. viridis as an Agrobacterium-mediated transformation method.

  8. New Targets for Renal Interstitial Fibrosis: Relaxin Family Peptide Receptor 1 - Angiotensin Type 2 Receptor Heterodimers

    OpenAIRE

    Sasser, Jennifer M.

    2014-01-01

    Recent findings have shown that relaxin has potent anti-fibrotic effects within the kidney; however, the signal transduction mechanisms involved in the renoprotective effects of relaxin are not well understood. Chow et al demonstrate that the relaxin receptor, RXFP1, forms heterodimer complexes with the angiotensin type 2 receptor, AT2, even in the absence of ligand and that these heterodimer complexes are required for relaxin’s antifibrotic effects. These findings identify a previously unkno...

  9. Fano resonance assisting plasmonic circular dichroism from nanorice heterodimers for extrinsic chirality

    OpenAIRE

    Li Hu; Yingzhou Huang; Liang Fang; Guo Chen; Hua Wei; Yurui Fang

    2015-01-01

    In this work, the circular dichroisms (CD) of nanorice heterodimers consisting of two parallel arranged nanorices with the same size but different materials are investigated theoretically. Symmetry-breaking is introduced by using different materials and oblique incidence to achieve strong CD at the vicinity of Fano resonance peaks. We demonstrate that all Au-Ag heterodimers exhibit multipolar Fano resonances and strong CD effect. A simple quantitative analysis shows that the structure with la...

  10. Tryptophan Contributions to the Empirical Free-Energy Profile in Gramicidin A/M Heterodimer Channels

    OpenAIRE

    Durrant, Jacob Devin; Caywood, Devin; Busath, David D

    2006-01-01

    Gramicidin A/gramicidin M heterodimer conductances were measured in planar lipid bilayers and found to form two distinguishable populations about halfway between the gramicidin A and gramicidin M homodimer conductances. This implies that the principle difference in the gramicidin A and gramicidin M transport free-energy profiles occurs at the channel center, where it would produce similar effects on the rate-limiting barrier for the two heterodimers. Kinetic analysis based on this and nearly ...

  11. Macrobenthic community response to the Marenzelleria viridis (Polychaeta) invasion of a Danish estuary

    DEFF Research Database (Denmark)

    Delefosse, Matthieu; Banta, Gary; Canal Vergés, Paula;

    2012-01-01

    investigate its effect on the native benthic community with focus on the two common polychaetes, Nereis (Hediste) diversicolor and Arenicola marina. M. viridis colonized Odense Fjord rapidly and within 3 years it had spread to about 50% of the estuary. The population development of M. viridis in Odense Fjord...

  12. Complete genome sequence of Saccharomonospora viridis type strain (P101T)

    Energy Technology Data Exchange (ETDEWEB)

    Pati, Amrita; Sikorski, Johannes; Nolan, Matt; Lapidus, Alla; Copeland, Alex; Glavina Del Rio, Tijana; Lucas, Susan; Chen, Feng; Tice, Hope; Pitluck, Sam; Cheng, Jan-Fang; Chertkov, Olga; Brettin, Thomas; Han, Cliff; Detter, John C.; Kuske, Cheryl; Bruce, David; Goodwin, Lynne; Chain, Patrick; D' haeseleer, Patrik; Chen, Amy; Palaniappan, Krishna; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Rohde, Manfred; Tindall, Brian J.; Goker, Markus; Bristow, Jim; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides1, Nikos C.; Klenk, Hans-Peter

    2009-05-20

    Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified amongst the usually Gram-positive actinomycetes. Members of the species are frequently found in hot compost and hay, and its spores can cause farmer?s lung disease, bagassosis, and humidifier fever. Strains of the species S. viridis have been found to metabolize the xenobiotic pentachlorophenol (PCP). The strain described in this study has been isolated from peat-bog in Ireland. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the family Pseudonocardiaceae, and the 4,308,349 bp long single replicon genome with its 3906 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

  13. A simple and highly efficient Agrobacterium-mediated transformation protocol for Setaria viridis

    Directory of Open Access Journals (Sweden)

    Polyana Kelly Martins

    2015-06-01

    Full Text Available The production and use of sugarcane in Brazil is very important for bioenergy production and is recognized as one of the most efficient in the world. In our laboratory, Setaria viridis is being tested as a model plant for sugarcane. S. viridis has biological attributes (rapid life cycle, small genome, diploid, short stature and simple growth requirements that make it suitable for use as a model system. We report a highly efficient protocol for Agrobacterium-mediated genetic transformation of S. viridis. The optimization of several steps in tissue culture allowed the rapid regeneration of plants and increased the rate of transformation up to 29%. This protocol could become a powerful tool for functional genomics in sugarcane.

  14. Subunit-selective mutagenesis indicates minimal polymerase activity in heterodimer-associated p51 HIV-1 reverse transcriptase.

    OpenAIRE

    Le Grice, S F; Naas, T; Wohlgensinger, B; Schatz, O.

    1991-01-01

    We have purified and determined functional parameters of reconstituted, recombinant HIV-1 reverse transcriptase (RT) heterodimers within which either the p66 or p51 polypeptide was selectively mutated in one or both aspartic acid residues constituting the proposed polymerase active site (-Y-M-D-D-). Heterodimers containing a mutated p51 polypeptide retain almost wild type levels of both RNA-dependent DNA polymerase and ribonuclease H (RNaseH) activity. In contrast, heterodimers whose p66 poly...

  15. Fibrin Hydrogel Based Bone Substitute Tethered with BMP-2 and BMP-2/7 Heterodimers

    Directory of Open Access Journals (Sweden)

    Lindsay S. Karfeld-Sulzer

    2015-03-01

    Full Text Available Current clinically used delivery methods for bone morphogenetic proteins (BMPs are collagen based and require large concentrations that can lead to dangerous side effects. Fibrin hydrogels can serve as osteoinductive bone substitute materials in non-load bearing bone defects in combination with BMPs. Two strategies to even further optimize such a fibrin based system include employing more potent BMP heterodimers and engineering growth factors that can be covalently tethered to and slowly released from a fibrin matrix. Here we present an engineered BMP-2/BMP-7 heterodimer where an N-terminal transglutaminase substrate domain in the BMP-2 portion provides covalent attachment to fibrin together with a central plasmin substrate domain, a cleavage site for local release of the attached BMP-2/BMP-7 heterodimer under the influence of cell-activated plasmin. In vitro and in vivo results revealed that the engineered BMP-2/BMP-7 heterodimer induces significantly more alkaline phosphatase activity in pluripotent cells and bone formation in a rat calvarial model than the engineered BMP-2 homodimer. Therefore, the engineered BMP-2/BMP-7 heterodimer could be used to reduce the amount of BMP needed for clinical effect.

  16. Antifouling activity of Indian marine invertebrate against the green mussel Perna viridis L.

    Digital Repository Service at National Institute of Oceanography (India)

    PrabhaDevi; Jayasree, V.; Naik, C.G.; Parameswaran, P.S.; Raveendran, T.V.; Kamat, S.Y.

    . The shells of P. viridis were opened by cutting the posterior abductor muscles. The mussels were allowed to rest in FSW. A known concentration (100 ppm) of test solution was allowed to drip on the foot gently without stimulating the foot Correspondence to...

  17. Modulation of antioxidant defences in digestive gland of Perna viridis (L.), on mercury exposures

    Digital Repository Service at National Institute of Oceanography (India)

    Verlecar, X.N.; Jena, K.B.; Chainy, G.B.N.

    Sub-lethal effects of mercury exposure (1/10 th of LC sub(50), i.e. 0.045 mg l sup(-1)) for 5, 10 and 15 d was investigated on oxidative stress parameters and antioxidant defences in digestive gland of Perna viridis. In addition to this an in vitro...

  18. Oxygen dynamics and porewater transport in sediments inhabited by the invasive polychaete Marenzelleria viridis

    DEFF Research Database (Denmark)

    Jovanovic, Zeljko; Larsen, Morten; Quintana, Cintia Organo;

    2014-01-01

    The polychaete Marenzelleria viridis is an invasive species and often replaces the native Nereis diversicolor. This shift leads to more reduced conditions and changes in the biogeochemical function of the sediments. By combining imaging techniques for O2 (planar optodes) and irrigation patterns...

  19. Characterization of duplicated Dunaliella viridis SPT1 genes provides insights into early gene divergence after duplication.

    Science.gov (United States)

    Guan, Zhenwei; Meng, Xiangzong; Sun, Zhenhua; Xu, Zhengkai; Song, Rentao

    2008-10-15

    The sodium-dependent phosphate transporter gene from unicellular green algae Dunaliella viridis, DvSPT1, shares similarity with members of Pi transporter family. Sequencing analysis of D. viridis BAC clone containing the DvSPT1 gene revealed two inverted duplicated copies of this gene (DvSPT1 and DvSPT1-2 respectively). The duplication covered most of both genes except for their 3' downstream region. The duplicated genomic sequences exhibited 97.9% identity with a synonymous divergence of Ks=0.0126 in the coding region. This data indicated very recent gene duplication in D. viridis genome, providing an excellent opportunity to investigate sequence and expression divergence of duplicated genes at an early stage. Scattered point mutations and length polymorphism of simple sequence repeats (SSRs) were predominant among the sequence divergence soon after gene duplication. Due to sequence divergence in the 5' regulatory regions and a swap of the entire 3' downstream regions (3'-UTR), DvSPT1 and DvSPT1-2 showed expression divergence in response to extra-cellular NaCl concentration changes. According to their expression patterns, the two diverged gene copies would provide better adaptation to a broader range of extra-cellular NaCl concentration. Furthermore, Southern blot analysis indicated that there might be a large phosphate transporter gene family in D. viridis. PMID:18662752

  20. PCl3-C6H6 heterodimers: evidence for Pπ phosphorus bonding at low temperatures.

    Science.gov (United States)

    Ramanathan, N; Sankaran, K; Sundararajan, K

    2016-07-28

    A phosphorous trichloride (PCl3)-benzene (C6H6) heterodimer was generated in a low temperature N2 matrix and was characterized using infrared spectroscopy. The structure of the heterodimer produced in the matrix isolation experiment was discerned through ab initio computations. Computations disclosed that the experimentally detected dimer is stabilized through strong non-covalent phosphorus bonded Pπ interaction, considered as a class of pnicogen bonding. This experimentally unmapped Pπ interaction so far has been reconnoitered using atoms in molecules and natural bond orbital and energy decomposition analyses. The influence of substitutions on both the PCl3 and C6H6 monomeric units of the heterodimer was subsequently examined to understand the strength of Pπ interaction as a result of these substitutions. PMID:27374927

  1. Synthesis, morphological control, and antibacterial properties of hollow/solid Ag2S/Ag heterodimers

    KAUST Repository

    Pang, Maolin

    2010-08-11

    Ag2S and Ag are important functional materials that have received considerable research interest in recent years. In this work, we develop a solution-based synthetic method to combine these two materials into hollow/solid Ag2S/Ag heterodimers at room temperature. Starting from monodisperse Cu2O solid spheres, CuS hollow spheres can be converted from Cu2O through a modified Kirkendall process, and the obtained CuS can then be used as a solid precursor for preparation of the Ag2S/Ag heterodimers through ion exchange and photo-assisted reduction. We have found that formation of the Ag2S/Ag heterodimers is instantaneous, and the size of Ag nanocrystals on the hollow spheres of Ag2S can be controlled by changing the concentration and power of reducing agents in the synthesis. The growth of Ag nanoparticles on hollow spheres of Ag2S in the dimers is along the [111] direction of the silver crystal; the light absorption properties have also been investigated. Furthermore, coupling or tripling of Ag2S/Ag heterodimers into dumbbell-like trimers ((Ag 2S)2/Ag, linear) and triangular tetramers ((Ag 2S)3/Ag, coplanar) can also be attained at 60°C by adding the bidentate ligand ethylenediamine as a cross-linking agent. To test the applicability of this highly asymmetric dipolar composite, photocatalytic inactivation of Escherichia coli K-12 in the presence of the as-prepared Ag 2S/Ag heterodimers has been carried out under UV irradiation. The added Ag2S/Ag heterodimers show good chemical stability under prolonged UV irradiation, and no appreciable solid dissolution is found. Possible mechanisms regarding the enhanced antibacterial activity have also been addressed. © 2010 American Chemical Society.

  2. New targets for renal interstitial fibrosis: relaxin family peptide receptor 1-angiotensin type 2 receptor heterodimers.

    Science.gov (United States)

    Sasser, Jennifer M

    2014-07-01

    The signal transduction mechanisms involved in the renoprotective effects of relaxin are not well understood. Chow et al. demonstrate that relaxin family peptide receptor 1 (RXFP1) forms heterodimer complexes with the angiotensin type 2 receptor (AT2), even in the absence of ligand, and that these heterodimers are required for relaxin's antifibrotic effects. These findings identify a previously unknown link between relaxin and angiotensin II signaling that could be a potential new target for slowing the progression of fibrotic renal diseases. PMID:24978374

  3. Response of DNA, proteins, lipids and antioxidant enzymes as measure of toxicity to mercury exposures in green mussel Perna viridis

    Digital Repository Service at National Institute of Oceanography (India)

    Verlecar, X.N.; Jena, K.B.; Chainy, G.B.N.

    Studies on exposures of gills of green-lipped mussel Perna viridis to sublethal levels of mercury (Hg) indicates that oxidative stress marker like lipids peroxidation and protein carbonyl content increase. With the exception of superoxide dismutase...

  4. Biometric and morphometric studies of Perna viridis and Perna indica along the southwest coast of India: a statistical approach

    Digital Repository Service at National Institute of Oceanography (India)

    Jayalakshmy, K.V.; Nair, M.; DileepKumar, R.; Vijayan, M.

    The growth indices of the Mussels, Perna viridis and Perna indica collected from the south west coast of India were examined using statistical methods. The Principal Component Analysis (PCA) and Exploratory Factor Analysis (EFA) separated 2...

  5. Complete mitochondrial genomes of the three brown algae (Heterokonta : Phaeophyceae) Dictyota dichotoma, Fucus vesiculosus and Desmarestia viridis

    NARCIS (Netherlands)

    Secq, MPO; Goer, SL; Stam, WT; Olsen, JL; Oudot-LeSecq, M.-P.

    2006-01-01

    We report the complete mitochondrial sequences of three brown algae (Dictyota dichotoma, Fucus vesiculosus and Desmarestia viridis) belonging to three phaeophycean lineages. They have circular mapping organization and contain almost the same set of mitochondrial genes, despite their size differences

  6. Thermal Constraints for Range Expansion of the Invasive Green Mussel, Perna viridis, in the Southeastern United States

    OpenAIRE

    URIAN, ALYSON G.; Hatle, John D.; GILG, MATTHEW R.

    2010-01-01

    Cold temperatures are thought to be among the most important determining factors of geographic distribution for tropical and sub-tropical marine invertebrates. The Asian green mussel, Perna viridis, has been introduced into coastal waters of Florida where its current distribution is hypothesized to be limited by low temperatures during winter. Lethal and sub-lethal effects (heat shock protein/Hsp70 expression) of cold water and air temperatures were analyzed in two size classes of P. viridis ...

  7. Subunit-selective mutagenesis indicates minimal polymerase activity in heterodimer-associated p51 HIV-1 reverse transcriptase.

    Science.gov (United States)

    Le Grice, S F; Naas, T; Wohlgensinger, B; Schatz, O

    1991-12-01

    We have purified and determined functional parameters of reconstituted, recombinant HIV-1 reverse transcriptase (RT) heterodimers within which either the p66 or p51 polypeptide was selectively mutated in one or both aspartic acid residues constituting the proposed polymerase active site (-Y-M-D-D-). Heterodimers containing a mutated p51 polypeptide retain almost wild type levels of both RNA-dependent DNA polymerase and ribonuclease H (RNaseH) activity. In contrast, heterodimers whose p66 polypeptide was likewise mutated exhibit wild type RNaseH activity but are deficient in RNA-dependent DNA polymerase activity. These results indicate that in heterodimer RT, the p51 component cannot compensate for active site mutations eliminating the activity of p66, indirectly implying that solely the p66 aspartic acid residues of heterodimer are crucial for catalysis. PMID:1718745

  8. Bistable optical response of a nanoparticle heterodimer : Mechanism, phase diagram, and switching time

    NARCIS (Netherlands)

    Nugroho, Bintoro S.; Iskandar, Alexander A.; Malyshev, Victor A.; Knoester, Jasper

    2013-01-01

    We conduct a theoretical study of the bistable optical response of a nanoparticle heterodimer comprised of a closely spaced semiconductor quantum dot and a metal nanoparticle. The bistable nature of the response results from the interplay between the quantum dot's optical nonlinearity and its self-a

  9. Interferência interespecífica entre Amaranthus hybridus L. e Amaranthus viridis L. Interspecific interference between Amaranthus hybridus L. and Amaranthus viridis L.

    OpenAIRE

    Angela Maria Maluf

    1999-01-01

    O objetivo deste trabalho foi estudar a interferência interespecífica entre duas espécies de Amaranthus -- A. viridis e A. hybridus ¾, esta última com dois biótipos distintos (verde e roxo); ambas ocorriam associadas em dois locais. Nas populações de cada local foram feitos ensaios de substituição independentes, em vasos, nos quais observou-se que as populações que germinam mais prontamente são as que vencem em competição, ou seja, se estabelecem e produzem maior número de sementes. Houve ten...

  10. Perdas causadas por Coccus viridis (Hemiptera: Coccidae em mudas de Coffea arabica L.

    Directory of Open Access Journals (Sweden)

    Flávio Lemes Fernandes

    2009-08-01

    Full Text Available Coccus viridis (Green danifica plantas jovens e adultas de Coffea arabica Linnaeu. No entanto, nada se sabe sobre a magnitude dos danos causados por esta praga. Assim, este trabalho teve por objetivo estudar as relações entre o ataque de C. viridis e as perdas causadas por este inseto a C. arabica. Este trabalho foi conduzido em casa de vegetação na Universidade Federal de Viçosa. Foram utilizadas sementes da linhagem IAC 15 da variedade “Catuaí vermelho” de café (C. arabica. Para a confecção dos tratamentos esta praga foi criada em casa de vegetação separada do experimento. Os tratamentos foram: plantas infestadas e não infestadas por adultos e ninfas da cochonilha verde. As plantas foram nutridas com solução nutritiva. Durante 110 dias foram avaliados: números de adultos e de ninfas de primeiro, segundo e terceiro ínstares, área foliar, diâmetro do caule, altura das plantas em todas repetições. No final do experimento avaliou-se o peso das raízes, caule, folhas e total. Os pesos das raízes, matéria seca total, área foliar e diâmetro do caule de plantas não atacadas por C. viridis superaram em 1,31; 1,41; 1,50 e 8,93 vezes, respectivamente o peso de plantas atacadas. As variáveis selecionadas foram: diâmetro do caule (cm, área foliar (cm², peso de raízes (g, ninfas, adultos e total das cochonilhas. Concluindo que a planta de C. arabica é afetada de forma diferente entre seus órgãos e que a ninfa de terceiro ínstar e adultos são as fases que mais causam danos a C. arabica.Losses Caused by Coccus viridis (Green (Hemiptera: Coccidae on Seedlings of Coffea arabica L.Abstract. Coccus viridis (Green cause losses on seedling and old plants of Coffea arabica (Green. However, nothing is known about of the damages caused by this pest. Thus, the objective of this work was to evaluate the relations between atack of C. viridis and the losses caused by this insect. on C. arabica. This work was conduced in greenhouse at

  11. Water chemistry influences the toxicity of silver to the green-lipped mussel Perna viridis.

    Science.gov (United States)

    Vijayavel, Kannappan

    2010-08-01

    The study determined the influence and relative importance of water chemistry parameters (pH, alkalinity, hardness) on the acute toxicity of silver to the green mussel Perna viridis. A preliminary bioassay revealed that 4 mg L(-1) of silver caused 50% mortality (LC50) in 96 h for mussels placed in seawater with pH 8.5, hardness 1,872 mg L(-1), and alkalinity 172 mg L(-1). Mortality of mussels increased with decreasing pH and increasing hardness and alkalinity variables. In contrast the mortality decreased with increasing pH and decreasing hardness and alkalinity values. The water chemistry also affected the concentration of silver in experimental seawater and bioaccumulation of silver in mussels. The results revealed that the chemical properties of seawater must be considered while conducting toxicity tests with metals like silver. The possible explanations for the influence of water chemistry on silver toxicity to P. viridis are discussed.

  12. Macrobenthic community response to the Marenzelleria viridis (Polychaeta) invasion of a Danish estuary

    DEFF Research Database (Denmark)

    Delefosse, Matthieu; Banta, Gary Thomas; Canal Vergés, Paula;

    2012-01-01

    of Odense Fjord. There was a positive interaction between M. viridis and the native A. marina. Otherwise the introduction of M. viridis was synchronous with a decrease of several macroinvertebrates species, especially N. diversicolor. The latter is still the dominant species in Odense Fjord, but its density...... has decreased by >60% in areas colonised by M. viridis. We do not expect that N. diversicolor disappears completely in this estuary, but it will probably be displaced to refuge areas where M. viridis cannot survive. Decrease in the population size of a key native species such as N. diversicolor might...

  13. Disseminated Mycobacterium celatum infection in a white-tailed trogon (Trogon viridis)

    DEFF Research Database (Denmark)

    Bertelsen, M. F.; Grondahl, C.; Giese, Steen Bjørck

    2006-01-01

    An adult female white-tailed trogon (Trogon viridis) was presented with abdominal enlargement and hard subcutaneous masses. Necropsy findings included bony masses extending from skeletal structures, disseminated pale foci in the liver, and a pale mass in the kidney. Histological examination...... revealed multifocal to coalescing granulomatous inflammation in the bone, liver, kidney, lung and spleen. Mycobacterium celatum was isolated from the liver and identified by DNA sequencing. This is the first report of M. celatum infection in an avian species....

  14. Antinociceptive and antipyretic activities of Amaranthus viridis Linn. in different experimental models

    Directory of Open Access Journals (Sweden)

    Kumar Ashok B.S.

    2010-01-01

    Full Text Available The methanolic extract of the whole plant extract of Amaranthus viridis L (MEAV was screened for antinociceptive activity using the acetic acid writhing test, hot plate test and tail immersion test in mice and for antipyretic activity using the yeast-induced pyrexia method in rats, at doses of 200 and 400 mg/kg body weight. Significant (p<0.01 dose-dependent antinociceptive and antipyretic properties were observed with 200 and 400 mg/kg.

  15. Antinociceptive and Antipyretic Activities of Amaranthus Viridis Linn in Different Experimental Models

    OpenAIRE

    Kumar, Bagepalli Srinivas Ashok; Lakshman, Kuruba; Jayaveera, Korala Konta Narsimha; Shekar, Devangam Sheshadri; Muragan, Chinna Swamy Vel; Manoj, Bachappa

    2009-01-01

    Methanolic extract of whole plant of Amaranthus viridis L (MEAV), was screened for antinociceptive activity using acetic acid induced writhing test, hot plate test and tail immersion test in mice. In a similar way a screening exercise was carried out to determine the antipyretic potential of the extract using yeast induced pyrexia method in rats. Administration of the extracts was applied to both laboratory animals at the doses of 200 and 400 mg/kg body weight, respectively. The results of th...

  16. Identification of lysozyme activity from two edible bivalves - Perna viridis (Linnaeus) and Meretrix casta (Chemnitz)

    Digital Repository Service at National Institute of Oceanography (India)

    Sharma, S.; Tanu; Chatterji, A.

    Pertanika J. Trop. Agric. Sci. 32(1): 85 - 90 (2009) ISSN: 1511-3701 ©Universiti Putra Malaysia Press Received: 20 May 2008 Accepted: 8 October 2008 * Corresponding Author Identification of Lysozyme Activity from Two Edible Bivalves - Perna viridis... (Linnaeus) and Meretrix casta (Chemnitz) Sumita Sharma 1* , Tanu 2 and Anil Chatterji 3 1 National Institute of Oceanography, Dona Paula, Goa, India 2 Banasthali Universiti, Rajasthan 3 Institute of Tropical Aquaculture, Universiti Malaysia Terengganu...

  17. Viruses of symbiotic Chlorella-like algae isolated from Paramecium bursaria and Hydra viridis

    OpenAIRE

    James L Van Etten; Meints, Russel H.; Kuczmarski, Daniel; Burbank, Dwight E.; Lee, Kit

    1982-01-01

    We previously reported that isolation of symbiotic Chlorella-like algae from the Florida strain of Hydra viridis induced replication of a virus (designated HVCV-1) in the algae. We now report that isolation of symbiotic Chlorella-like algae from four other sources of green hydra and one source of the protozoan Paramecium bursaria also induced virus synthesis. Algae from one of these hydra contained a virus identical to HVCV-1 (based on its rate of sedimentation, buoyant density, reaction to H...

  18. Interaction of Temperature and Photoperiod Increases Growth and Oil Content in the Marine Microalgae Dunaliella viridis.

    Directory of Open Access Journals (Sweden)

    Soundarya Srirangan

    Full Text Available Eukaryotic marine microalgae like Dunaliella spp. have great potential as a feedstock for liquid transportation fuels because they grow fast and can accumulate high levels of triacylgycerides with little need for fresh water or land. Their growth rates vary between species and are dependent on environmental conditions. The cell cycle, starch and triacylglycerol accumulation are controlled by the diurnal light:dark cycle. Storage compounds like starch and triacylglycerol accumulate in the light when CO2 fixation rates exceed the need of assimilated carbon and energy for cell maintenance and division during the dark phase. To delineate environmental effects, we analyzed cell division rates, metabolism and transcriptional regulation in Dunaliella viridis in response to changes in light duration and growth temperatures. Its rate of cell division was increased under continuous light conditions, while a shift in temperature from 25 °C to 35 °C did not significantly affect the cell division rate, but increased the triacylglycerol content per cell several-fold under continuous light. The amount of saturated fatty acids in triacylglycerol fraction was more responsive to an increase in temperature than to a change in the light regime. Detailed fatty acid profiles showed that Dunaliella viridis incorporated lauric acid (C12:0 into triacylglycerol after 24 hours under continuous light. Transcriptome analysis identified potential regulators involved in the light and temperature-induced lipid accumulation in Dunaliella viridis.

  19. Observations on white and yellow venoms from an individual southern Pacific rattlesnake (Crotalus viridis helleri).

    Science.gov (United States)

    Johnson, E K; Kardong, K V; Ownby, C L

    1987-01-01

    Biochemical differences in white and yellow venoms produced in the separate venom glands of an individual southern Pacific rattlesnake (Crotalus viridis helleri) were investigated. Compared to the yellow venom, the white venom contained fewer low molecular weight components and was considerably less toxic. Although the exact LD50 was not determined, the white venom did not produce toxic effects in mice when injected i.v. at concentrations up to 10 mg/kg. The i.v. LD50 of the yellow venom was approximately 1.6 mg/kg. Both white and yellow venoms had hemorrhagic activity, but the white venom caused less intradermal hemorrhage in mice. No L-amino acid oxidase activity was measured in the white venom and protease and phospholipase A2 activities of the white venom were much less than in the yellow venom. The white and yellow venoms both produced myonecrosis at 1, 3 and 24 hr after i.m. injection into mice, however, there were some qualitative differences in the myonecrosis produced. When the venom samples were reacted against Wyeth's polyvalent (Crotalidae) antivenom using immunodiffusion, three precipitin bands formed against the yellow venom, whereas only one formed against the white venom. When reacted against an antiserum to myotoxin alpha from C. viridis viridis venom, both the white and yellow venoms produced one precipitin band each.

  20. Assessment of pollution in road runoff using a Bufo viridis biological assay

    Energy Technology Data Exchange (ETDEWEB)

    Dorchin, A., E-mail: adorchin@campus.haifa.ac.i [Department of Evolutionary and Environmental Biology, Faculty of Natural Sciences, University of Haifa, Mount Carmel, Haifa 31905 (Israel); Shanas, U., E-mail: shanas@research.haifa.ac.i [Department of Evolutionary and Environmental Biology, Faculty of Natural Sciences, University of Haifa, Mount Carmel, Haifa 31905 (Israel); Department of Biology, Faculty of Natural sciences, University of Haifa - Oranim, Tiv' on 36006 (Israel)

    2010-12-15

    Road runoff is a major source of environmental pollution, significantly threatening nearby aquatic habitats. Chemical analyses indicate high pollutant concentrations in the road's 'first flush', but bioassays are more advantageous for addressing the cumulative effects of the numerous pollutants within the runoff. We used Bufo viridis embryos and larvae to assess the toxicity of road runoff from two major highways in Israel. We show, for the first time, that exposure to midseason runoff not only has an adverse effect on growth and development rates of B. viridis larvae but can also lead to increased rates of morphological deformations. Seasonal first flushes, despite having higher metal concentrations, did not adversely affect the toad larvae, apparently due to a counter effect of organic matter that potentially served as a supplementary energy resource. Road runoff can be a major cause for a qualitative decrease in the quality of aquatic habitats threatening amphibians in Israel. - Highway runoff has detrimental effects on the development of B. viridis larvae.

  1. Has Aeshna viridis EVERSMANN, 1836 (Odonata: Aeshnidae really disappeared from southern Poland (East-Central Europe?

    Directory of Open Access Journals (Sweden)

    Buczyński Paweł

    2015-03-01

    Full Text Available 50-100 years ago the southern boundary of the distribution area of Aeshna viridis ran through southern Poland. However, no records of this species from this area have been reported since then. The species is therefore considered as having retreated northwards. The present research disclosed three new sites of A. viridis on the edge of or just beyond its historical distribution area: one in south-western Poland (Trestno: 51°04’N, 17º08’E and two in the south-east of the country (Krasiczyn: 49º46’N, 22º38’E, Bolestraszyce: 49º49’N, 22º51’E. All the sites were anthropogenic. This demonstrates the survival of a number of populations and the formation of new ones in water bodies formed de novo or to which Stratiotes aloides was introduced artificially. This suggests that the conservation of A. viridis is possible in this region.

  2. Effects of abiotic stress on physiological plasticity and water use of Setaria viridis (L.).

    Science.gov (United States)

    Saha, Prasenjit; Sade, Nir; Arzani, Ahmad; Rubio Wilhelmi, Maria Del Mar; Coe, Kevin M; Li, Bosheng; Blumwald, Eduardo

    2016-10-01

    The emerging model Setaria viridis with its C4 photosynthesis and adaptation to hot and dry locations is a promising system to investigate water use and abiotic stress tolerance. We investigated the physiological plasticity of six S. viridis natural accessions that originated from different regions of the world under normal conditions and conditions of water-deficit stress and high temperatures. Accessions Zha-1, A10.1 and Ula-1 showed significantly higher leaf water potential (Ψleaf), photosynthesis (A), transpiration (E), and stomatal conductance (gs) rates compared to Ast-1, Aba-1 and Sha-1 when grown under stress conditions. Expression analysis of genes associated with C4 photosynthesis, aquaporins, ABA biosynthesis and signaling including genes involved in stress revealed an increased sensitivity of Ast-1, Aba-1 and Sha-1 to stresses. Correlation analysis of gene expression data with physiological and biochemical changes characterized A10.1 and Ast-1 as two extreme tolerant and sensitive accessions originated from United States and Azerbaijan under water-deficit and heat stress, respectively. Although preliminary, our study demonstrated the plasticity of S. viridis accessions under stress, and allows the identification of tolerant and sensitive accessions that could be use to study the mechanisms associated with stress tolerance and to characterize of the regulatory networks involved in C4 grasses. PMID:27593471

  3. Symbiosis in the green leafhopper, Cicadella viridis (Hemiptera, Cicadellidae). Association in statu nascendi?

    Science.gov (United States)

    Michalik, Anna; Jankowska, Władysława; Kot, Marta; Gołas, Aniela; Szklarzewicz, Teresa

    2014-11-01

    The green leafhopper, Cicadella viridis lives in symbiotic association with microorganisms. The ultrastructural and molecular analyses have shown that in the body of the C. viridis two types of bacteriocyte endosymbionts are present. An amplification and sequencing of 16S rRNA genes revealed that large, pleomorphic bacteria display a high similarity (94-100%) to the endosymbiont 'Candidatus Sulcia muelleri' (phylum Bacteroidetes), whereas long, rod-shaped microorganisms are closely related to the γ-proteobacterial symbiont Sodalis (97-99% similarity). Both endosymbionts may be harbored in their own bacteriocytes as well as may co-reside in the same bacteriocytes. The ultrastructural observations have revealed that the Sodalis-like bacteria harboring the same bacteriocytes as bacterium Sulcia may invade the cells of the latter. Bacteria Sulcia and Sodalis-like endosymbionts are transovarially transmitted from one generation to the next. However, Sodalis-like endosymbionts do not invade the ovaries individually, but only inside Sulcia cells. Apart from bacteriocyte endosymbionts, in the body of C. viridis small, rod-shaped bacteria have been detected, and have been identified as being closely related to γ-proteobacterial microorganism Pectobacterium (98-99% similarity). The latter are present in the sheath cells of the bacteriomes containing bacterium Sulcia as well as in fat body cells.

  4. Interaction of Temperature and Photoperiod Increases Growth and Oil Content in the Marine Microalgae Dunaliella viridis.

    Science.gov (United States)

    Srirangan, Soundarya; Sauer, Marie-Laure; Howard, Brian; Dvora, Mia; Dums, Jacob; Backman, Patrick; Sederoff, Heike

    2015-01-01

    Eukaryotic marine microalgae like Dunaliella spp. have great potential as a feedstock for liquid transportation fuels because they grow fast and can accumulate high levels of triacylgycerides with little need for fresh water or land. Their growth rates vary between species and are dependent on environmental conditions. The cell cycle, starch and triacylglycerol accumulation are controlled by the diurnal light:dark cycle. Storage compounds like starch and triacylglycerol accumulate in the light when CO2 fixation rates exceed the need of assimilated carbon and energy for cell maintenance and division during the dark phase. To delineate environmental effects, we analyzed cell division rates, metabolism and transcriptional regulation in Dunaliella viridis in response to changes in light duration and growth temperatures. Its rate of cell division was increased under continuous light conditions, while a shift in temperature from 25 °C to 35 °C did not significantly affect the cell division rate, but increased the triacylglycerol content per cell several-fold under continuous light. The amount of saturated fatty acids in triacylglycerol fraction was more responsive to an increase in temperature than to a change in the light regime. Detailed fatty acid profiles showed that Dunaliella viridis incorporated lauric acid (C12:0) into triacylglycerol after 24 hours under continuous light. Transcriptome analysis identified potential regulators involved in the light and temperature-induced lipid accumulation in Dunaliella viridis. PMID:25992838

  5. Isolation and characterization of a sodium-dependent phosphate transporter gene in Dunaliella viridis.

    Science.gov (United States)

    Li, Qiyun; Gao, Xiaoshu; Sun, Yu; Zhang, Qingqi; Song, Rentao; Xu, Zhengkai

    2006-02-01

    A sodium-dependent phosphate transporter gene, DvSPT1, was isolated from a cDNA library using a probe derived from a subtracted cDNA library of Dunaliella viridis. Sequencing analyses revealed a cDNA sequence of 2649 bp long and encoded an open-reading frame consisting of 672 amino acids. The deduced amino acid sequence of DvSPT1 exhibited 31.2% identity to that of TcPHO from Tetraselmis chui. Hydrophobicity and secondary structure prediction revealed 11 conserved transmembrane domains similar to those found in PHO89 from Saccharomyces cerevisiae and PHO4 from Neurospora crassa. Northern blot analysis indicated that the DvSPT1 expression was induced upon NaCl hyperosmotic stress or phosphate depletion. Functional characterization in yeast Na+ export pump mutant G19 suggested that DvSPT1 encoded a Na+ transporter protein. The gene sequence of GDvSPT1 (7922 bp) was isolated from a genomic library of D. viridis. Southern blot analysis indicated that there exist at least two homologous genes in D. viridis. PMID:16359638

  6. Ag/Ag{sub 2}S heterodimers: tailoring the metal–semiconductor interface in a single nanoparticle

    Energy Technology Data Exchange (ETDEWEB)

    Kumar, Baskaran Ganesh; Srinivas, Billakanti; Prasad, Muvva D.; Muralidharan, Krishnamurthi, E-mail: kmsc@uohyd.ernet.in, E-mail: murali@uohyd.ac.in [University of Hyderabad, School of Chemistry (India)

    2015-07-15

    Heterodimers are conjoined particles of two inorganic materials, and they are generally synthesised in multiple steps. But, the multi-step syntheses are less effective because of the low yield, long reaction time, labour intensive process and complexity in the synthesis and thus not ideal for scale up. Herein, we have demonstrated single-step, one-pot syntheses for two different types of Ag/Ag{sub 2}S heterodimers. Two types of heterodimers were obtained while varying stoichiometry in the reaction of AgNO{sub 3} with sulphur in the presence of hexamethyldisilazane (HMDS) at 140 °C. To the best of our knowledge, this was the first demonstration of single-step process to synthesise Ag/Ag{sub 2}S heterodimers. Heterodimers had dumbbell shape with both metal and semiconductor domains in single particle which were constructed by spherical Ag and Ag{sub 2}S nanoparticles. Ag (2 0 0) and Ag{sub 2}S (0 2 2) planes associated to form heterodimers. The presence of metal–semiconductor interfaces was confirmed by HRTEM and UV analysis. Thus, we have demonstrated the HMDS-assisted synthesis as a promising method for direct synthesis of Ag/Ag{sub 2}S heterodimers.

  7. Seasonal variation of oxidative biomarkers in gills and digestive gland of green-lipped mussel Perna viridis from Arabian Sea

    Science.gov (United States)

    Verlecar, X. N.; Jena, K. B.; Chainy, G. B. N.

    2008-03-01

    Investigations on seasonal variation in oxidative stress biomarkers were carried out on the natural population of green-lipped mussel Perna viridis collected from Bambolim beach area of Goa. Oxidative stress indices such as lipid peroxidation (LPX), hydrogen peroxide (H 2O 2), superoxide dismutase (SOD), catalase (CAT), glutathione peroxidase (GPX), glutathione transferase (GST), glutathione reductase (GR), reduced glutathione (GSH) and ascorbic acid (ASA) were measured in gills and digestive gland of P. viridis during February, May, August and November. The present study reveals two important aspects regarding the antioxidant defence status of tissues of P. viridis. Firstly, antioxidant capacity of tissues of P. viridis exhibits seasonal variation. Secondly, various components of antioxidant capacity such as oxidative stress markers, levels of antioxidant enzymes and small antioxidant molecules vary differently in tissues with respect to different seasons. Although the oxidative stress status of gills and digestive gland of P. viridis expressed in terms of LPX and H 2O 2 was the lowest in February, its level was maximal in gills and digestive gland during May and November, respectively. While activities of SOD and GPX of tissues of P. viridis were found to be low in August, activities of CAT and GR were recorded to be low in February. GST activity in gills although remained high in February, in digestive gland elevated values were recorded in August and November. A seasonal variation in the levels of small antioxidant molecules was also noticed. Among non enzymatic antioxidants ASA content of tissues was maximal in May and August in comparison to February and November, but GSH remained high in November. It therefore appears that environmental factors may play a crucial role in regulating the oxidative stress capacity of tissues of P. viridis.

  8. PROXIMATE CONTENT AND CHEMICAL COMPOSITION OF OCIMUM VIRIDIS LEAF AND OCIMUM GRATISSIUM LEAF

    Directory of Open Access Journals (Sweden)

    Abdurahman F.I.

    2012-04-01

    Full Text Available This study is aimed at determining the proximate content, concentration of some micro/macro elements and the phytochemistry of Ocimum viridis (scent leafs and Ocimum gratissimum (jaw’s mallow leafs with the view of updating its usage in orthodox and herbal medicine by man in the treatment of dysentery, diarrhea and wound healing. The leaves sampled of Ocimum viridis and Ocimum gratissimum were collected from Zannari, Jere L.G.A, Borno state, Nigeria. The proximate analysis was carried out using methods of Association of Analytical Chemist and the results showed that Ocimum viridis has higher dry matter (99.70%, crude protein (12.48%, Nitrogen free extract (2.03%, Ash (6.5% and fats (7.0%. While carbohydrate (83.40%, crude fibre (45.50% and moisture content (0.4% were estimated to be higher in Ocimum gratissimum. The levels of eight (8 elements (Ca, F, Cu, Cr, Mn, Zn, Fe, and Pb were determined using Atomic Absorption Spectrophotometry. The results revealed higher concentration in Ocimum gratissimum except for iron and manganese concentration which are higher of the elements understudy in Ocimum viridis only the lead was not detected in the samples by the methodology employed for the analysis. The concentration of anions (nitrates, phosphates and sulphates was estimated using the Smart Spectro Spectrophotometer. It shows that, Ocimum viridis has higher concentration of 11.08 mg/g and 7.04 mg/g in nitrates and sulphates respectively. And Ocimum gratissimum has higher concentration of phosphates 6.28 mg/g. The phytochemicals and some heavy and trace elements as well as a few anions were evaluated using standard procedures. The phytochemical screening of both the fresh and dry leafs revealed the presence of very high cardiac glycosides and the flavonoids, terpenoids, saponins, tannins and carbohydrates shows difference in variation of the leafs. And alkaloids were found to be absence in both fresh and dry leafs. The elemental content obtained

  9. Fano resonance assisting plasmonic circular dichroism from nanorice heterodimers for extrinsic chirality

    CERN Document Server

    Hu, Li; Fang, Liang; Chen, Guo; Wei, Hua; Fang, Yurui

    2015-01-01

    In this work, the circular dichroisms (CD) of nanorice heterodimers consisting of two parallel arranged nanorices with the same size but different materials are investigated theoretically. Symmetry-breaking is introduced by using different materials and oblique incidence to achieve strong CD at the vicinity of Fano resonance peaks. We demonstrate that all Au-Ag heterodimers exhibit multipolar Fano resonances and strong CD effect. A simple quantitative analysis shows that the structure with larger Fano asymmetry factor has stronger CD. The intensity and peak positions of the CD effect can be flexibly tuned in a large range by changing particle size, shape, the inter-particle distance and surroundings. Furthermore, CD spectra exhibit high sensitivity to ambient medium in visible and near infrared regions. Our results here are beneficial for the design and application of high sensitive CD sensors and other related fields.

  10. Solution structure of the isolated histone H2A-H2B heterodimer.

    Science.gov (United States)

    Moriwaki, Yoshihito; Yamane, Tsutomu; Ohtomo, Hideaki; Ikeguchi, Mitsunori; Kurita, Jun-Ichi; Sato, Masahiko; Nagadoi, Aritaka; Shimojo, Hideaki; Nishimura, Yoshifumi

    2016-01-01

    During chromatin-regulated processes, the histone H2A-H2B heterodimer functions dynamically in and out of the nucleosome. Although detailed crystal structures of nucleosomes have been established, that of the isolated full-length H2A-H2B heterodimer has remained elusive. Here, we have determined the solution structure of human H2A-H2B by NMR coupled with CS-Rosetta. H2A and H2B each contain a histone fold, comprising four α-helices and two β-strands (α1-β1-α2-β2-α3-αC), together with the long disordered N- and C-terminal H2A tails and the long N-terminal H2B tail. The N-terminal αN helix, C-terminal β3 strand, and 310 helix of H2A observed in the H2A-H2B nucleosome structure are disordered in isolated H2A-H2B. In addition, the H2A α1 and H2B αC helices are not well fixed in the heterodimer, and the H2A and H2B tails are not completely random coils. Comparison of hydrogen-deuterium exchange, fast hydrogen exchange, and {(1)H}-(15)N hetero-nuclear NOE data with the CS-Rosetta structure indicates that there is some conformation in the H2A 310 helical and H2B Lys11 regions, while the repression domain of H2B (residues 27-34) exhibits an extended string-like structure. This first structure of the isolated H2A-H2B heterodimer provides insight into its dynamic functions in chromatin. PMID:27181506

  11. Homo- and heterodimers of the retinoid X receptor (RXR) activated transcription in yeast.

    OpenAIRE

    Heery, D M; Pierrat, B.; Gronemeyer, H; P. Chambon; Losson, R

    1994-01-01

    The polymorphic nature of sequences which act as retinoic acid response elements (RAREs and RXREs) in transactivation assays in mammalian cells, suggests that elements consisting of a direct repetition of a half site motif, separated by 1 to 5 base pairs (DR1 to DR5), are targets for retinoic acid (RA) signalling. In a previous report we showed that in yeast cells, heterodimers of the retinoic acid receptors RAR alpha and RXR alpha were required for efficient transcription of a reporter gene ...

  12. Bi-specific MHC Heterodimers for Characterization of Cross-reactive T Cells*

    OpenAIRE

    Shen, Zu T.; Brehm, Michael A; Daniels, Keith A.; Sigalov, Alexander B.; Selin, Liisa K.; Welsh, Raymond M.; Stern, Lawrence J.

    2010-01-01

    T cell cross-reactivity describes the phenomenon whereby a single T cell can recognize two or more different peptide antigens presented in complex with MHC proteins. Cross-reactive T cells have previously been characterized at the population level by cytokine secretion and MHC tetramer staining assays, but single-cell analysis is difficult or impossible using these methods. In this study, we describe development of a novel peptide-MHC heterodimer specific for cross-reactive T cells. MHC-pepti...

  13. Proton transfer in histidine-tryptophan heterodimers embedded in helium droplets

    Energy Technology Data Exchange (ETDEWEB)

    Bellina, Bruno; Merthe, Daniel J.; Kresin, Vitaly V. [Department of Physics and Astronomy, University of Southern California, Los Angeles, California 90089-0484 (United States)

    2015-03-21

    We used cold helium droplets as nano-scale reactors to form and ionize, by electron bombardment and charge transfer, aromatic amino acid heterodimers of histidine with tryptophan, methyl-tryptophan, and indole. The molecular interaction occurring through an N–H ⋅ ⋅ ⋅ N hydrogen bond leads to a proton transfer from the indole group of tryptophan to the imidazole group of histidine in a radical cationic environment.

  14. Bistable optical response of a nanoparticle heterodimer: Mechanism, phase diagram, and switching time

    OpenAIRE

    Nugroho, Bintoro S.; Iskandar, Alexander A.; Malyshev, Victor A.; Knoester, Jasper

    2013-01-01

    We conduct a theoretical study of the bistable optical response of a nanoparticle heterodimer comprised of a closely spaced semiconductor quantum dot and a metal nanoparticle. The bistable nature of the response results from the interplay between the quantum dot's optical nonlinearity and its self-action (feedback) originating from the presence of the metal nanoparticle. The feedback is governed by a complex valued coupling parameter G = G(R) + iG(I). We calculate the bistability phase diagra...

  15. Bistable optical response of nanoparticle heterodimer: Mechanism, phase diagram, and switching time

    OpenAIRE

    Nugroho, B. S.; Iskandar, A.A.; Malyshev, V. A.; Knoester, J.

    2012-01-01

    We conduct a theoretical study of the bistable optical response of a nanoparticle heterodimer comprised of a closely spaced semiconductor quantum dot and metal nanoparticle. The bistable nature of the response results from the interplay between the quantum dot's optical nonlinearity and its self-action (feedback) originating from the presence of the metal nanoparticle. We show that the feedback is governed by a complex valued coupling parameter $G$. Both the real and imaginary parts of $G$ ($...

  16. Proton transfer in histidine-tryptophan heterodimers embedded in helium droplets

    Science.gov (United States)

    Bellina, Bruno; Merthe, Daniel J.; Kresin, Vitaly V.

    2015-03-01

    We used cold helium droplets as nano-scale reactors to form and ionize, by electron bombardment and charge transfer, aromatic amino acid heterodimers of histidine with tryptophan, methyl-tryptophan, and indole. The molecular interaction occurring through an N-H ṡ ṡ ṡ N hydrogen bond leads to a proton transfer from the indole group of tryptophan to the imidazole group of histidine in a radical cationic environment.

  17. Proton transfer in histidine-tryptophan heterodimers embedded in helium droplets

    CERN Document Server

    Bellina, Bruno; Kresin, Vitaly V

    2015-01-01

    We used cold helium droplets as nano-scale reactors to form and ionize, by electron bombardment and charge transfer, aromatic amino acid heterodimers of histidine with tryptophan, methyl-tryptophan, and indole. The molecular interaction occurring through an N-H...N hydrogen bond leads to a proton transfer from the indole group of tryptophan to the imidazole group of histidine in a radical cationic environment.

  18. Catalytic Asymmetric Synthesis of Ketene Heterodimer β-Lactones: Scope and Limitations.

    Science.gov (United States)

    Chen, Shi; Ibrahim, Ahmad A; Peraino, Nicholas J; Nalla, Divya; Mondal, Mukulesh; Van Raaphorst, Maxwell; Kerrigan, Nessan J

    2016-09-01

    In this article we describe extensive studies of the catalytic asymmetric heterodimerization of ketenes to give ketene heterodimer β-lactones. The optimal catalytic system was determined to be a cinchona alkaloid derivative (TMS-quinine or Me-quinidine). The desired ketene heterodimer β-lactones were obtained in good to excellent yields (up to 90%), with excellent levels of enantioselectivity (≥90% ee for 33 Z and E isomer examples), good to excellent (Z)-olefin isomer selectivity (≥90:10 for 20 examples), and excellent regioselectivity (only one regioisomer formed). Full details of catalyst development studies, catalyst loading investigations, substrate scope exploration, protocol innovations (including double in situ ketene generation for 7 examples), and an application to a cinnabaramide A intermediate are described. The addition of lithium perchlorate (1-2 equiv) as an additive to the alkaloid catalyst system was found to favor formation of the E isomer of the ketene heterodimer. Ten examples were formed with moderate to excellent (E)-olefin isomer selectivity (74:25 to 97:3) and with excellent enantioselectivity (84-98% ee). PMID:27490092

  19. Stark effect in wild-type and heterodimer-containing reaction centers from Rhodobacter capsulatus

    International Nuclear Information System (INIS)

    The effect of an external electric field on the optical absorption spectra of wild-type Rhodobacter capsulatus and two Rb. capsulatus reaction centers that have been genetically modified through site-directed mutagenesis was measured at 77 K. The two genetically modified reaction centers replace histidine M200, the axial ligand to the M-side bacteriochlorophyll of the special pair, with either leucine or phenylalanine. These substitutions results in the replacement of the M-side bacteriochlorophyll with bacteriopheophytin, forming a bacteriochlorophyll-bacteriopheophytin heterodimer. The magnitude of the change in dipole moment from the ground to excited state (Δμapp) and the angle δ between the Qy transition moment and the direction of Δμapp were measured for the special pair absorption band for all three reaction centers. The differences in the magnitude of Δμapp and the angle δ between wild-type and heterodimer reaction centers are consistent with increased charge transfer in the heterodimer special pair. These results support calculations that place the special pair charge-transfer state higher in energy than the excited singlet state in wild-type Rb. capsulatus RCs

  20. Density regulation in toad populations (Epidalea calamita, Bufotes viridis) by differential winter survival of juveniles.

    Science.gov (United States)

    Sinsch, Ulrich; Schäfer, Alena M

    2016-01-01

    The size of amphibian populations varies considerably between years, so that systematic trends in dynamics are difficult to detect. Informed conservation management of presumably declining populations requires the identification of the most sensitive life stage. In temperate-zone anurans there is growing evidence that juveniles hibernating for the first time suffer from substantial winter losses. In two syntopic toads (Epidalea calamita, Bufotes viridis) we monitored survival of such juveniles during four consecutive winters in the natural habitat and in four temperature treatments (3°, 5 °C, 10°/15 °C or 20 °C, natural light-dark cycle) in temperature-controlled chambers during winter. Specifically, we tested the hypotheses that (1) winter mortality of juvenile toads which hibernate for the first time in their life is an important component of population dynamics, and that (2) mortality rates differed between the two species. Parameters quantified were size-dependent winter mortality and body condition of pre- and post-hibernating juveniles. Field data provided evidence for the important role of winter mortality of first-hibernators in population dynamics. Choice of hibernacula differed in E. calamita between small and medium-sized individuals and also between the two species suggesting distinct mortality risks. The inability of small E. calamita to reach frost-proof hibernacula by burrowing, and the exposure of small B. viridis to predators are the most probable causes of size-assortative winter mortality. In conclusion, E. calamita juveniles may benefit from rising average winter temperatures in the future by decreased risk of freezing to death, whereas predator-caused winter mortality of B. viridis juveniles will also depend on the effects of climate warming on predator phenology.

  1. Karyological and flow cytometric evidence of triploid specimens in Bufo viridis (Amphibia Anura

    Directory of Open Access Journals (Sweden)

    D Cavallo

    2010-01-01

    Full Text Available Karyological and flow cytometric (FCM analyses were performed on a group of 14 green toads of the Bufo viridis species from seven Eurasian populations. Both approaches gave concordant results concerning the DNA ploidy level. All the populations examined were represented exclusively by diploid or tetraploid specimens, except one, where triploids were found. Results evidenced an interpopulation variability in DNA content against the same ploidy level, as well as an unusually high number of triploids in a particular reproductive place. The origin of polyploidy and the presence and persistence of a high number of triploids in a particular population are discussed.

  2. A theoretical study of electronic excited states of photosynthetic reaction center in Rhodopseudomonas viridis

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    The electronic singlet vertical excited states of photosynthetic reaction center (PSRC) in Rhodopseudomonas (Rps.) viridis were investigated by ZINDO and INDO/S methods. The effects of the interactions of pigment-pigment and pigment-protein on the electronic excitations were examined. The calculation results showed that the interactions of pigment-pigment and pigment-protein play an important role in reasonably assigning the experimental absorption and circular dichroism (CD) spectra of PSRC in Rps. virids. By comparing the theoretically computed excited states with the experimental absorption and CD spectra, satisfactory assignments of the experimental spectroscopic peaks were achieved.

  3. Occurrence of the alien nudibranch Melibe viridis (Kelaart, 1858 (Opisthobranchia, Tethydidae, in the Maltese Islands

    Directory of Open Access Journals (Sweden)

    J.A. BORG

    2012-12-01

    Full Text Available The alien dendronotacean nudibranch Melibe viridis (Kelaart, 1858, a tropical Indo-Pacific species that seems to have been introduced by shipping into the Mediterranean via the Suez Canal, and which has established populations in Greece, Turkey, Cyprus, Montenegro, Croatia, NW Sicily, southern peninsular Italy and Djerba Island in the Gulf of Gabes, is recorded for the first time from Malta. A thriving population was observed on a soft sediment bottom at a depth of 18-20 m off the western coast of the island of Comino (Maltese Islands. It is suggested that this species was introduced into Malta due to a natural range expansion of surrounding populations.

  4. Engineering of Immunoglobulin Fc Heterodimers Using Yeast Surface-Displayed Combinatorial Fc Library Screening.

    Directory of Open Access Journals (Sweden)

    Hye-Ji Choi

    Full Text Available Immunoglobulin Fc heterodimers, which are useful scaffolds for the generation of bispecific antibodies, have been mostly generated through structure-based rational design methods that introduce asymmetric mutations into the CH3 homodimeric interface to favor heterodimeric Fc formation. Here, we report an approach to generate heterodimeric Fc variants through directed evolution combined with yeast surface display. We developed a combinatorial heterodimeric Fc library display system by mating two haploid yeast cell lines, one haploid cell line displayed an Fc chain library (displayed FcCH3A with mutations in one CH3 domain (CH3A on the yeast cell surface, and the other cell line secreted an Fc chain library (secreted FcCH3B with mutations in the other CH3 domain (CH3B. In the mated cells, secreted FcCH3B is displayed on the cell surface through heterodimerization with the displayed FcCH3A, the detection of which enabled us to screen the library for heterodimeric Fc variants. We constructed combinatorial heterodimeric Fc libraries with simultaneous mutations in the homodimer-favoring electrostatic interaction pairs K370-E357/S364 or D399-K392/K409 at the CH3 domain interface. High-throughput screening of the libraries using flow cytometry yielded heterodimeric Fc variants with heterodimer-favoring CH3 domain interface mutation pairs, some of them showed high heterodimerization yields (~80-90% with previously unidentified CH3 domain interface mutation pairs, such as hydrogen bonds and cation-π interactions. Our study provides a new approach for engineering Fc heterodimers that could be used to engineer other heterodimeric protein-protein interactions through directed evolution combined with yeast surface display.

  5. Engineering of Immunoglobulin Fc Heterodimers Using Yeast Surface-Displayed Combinatorial Fc Library Screening.

    Science.gov (United States)

    Choi, Hye-Ji; Kim, Ye-Jin; Choi, Dong-Ki; Kim, Yong-Sung

    2015-01-01

    Immunoglobulin Fc heterodimers, which are useful scaffolds for the generation of bispecific antibodies, have been mostly generated through structure-based rational design methods that introduce asymmetric mutations into the CH3 homodimeric interface to favor heterodimeric Fc formation. Here, we report an approach to generate heterodimeric Fc variants through directed evolution combined with yeast surface display. We developed a combinatorial heterodimeric Fc library display system by mating two haploid yeast cell lines, one haploid cell line displayed an Fc chain library (displayed FcCH3A) with mutations in one CH3 domain (CH3A) on the yeast cell surface, and the other cell line secreted an Fc chain library (secreted FcCH3B) with mutations in the other CH3 domain (CH3B). In the mated cells, secreted FcCH3B is displayed on the cell surface through heterodimerization with the displayed FcCH3A, the detection of which enabled us to screen the library for heterodimeric Fc variants. We constructed combinatorial heterodimeric Fc libraries with simultaneous mutations in the homodimer-favoring electrostatic interaction pairs K370-E357/S364 or D399-K392/K409 at the CH3 domain interface. High-throughput screening of the libraries using flow cytometry yielded heterodimeric Fc variants with heterodimer-favoring CH3 domain interface mutation pairs, some of them showed high heterodimerization yields (~80-90%) with previously unidentified CH3 domain interface mutation pairs, such as hydrogen bonds and cation-π interactions. Our study provides a new approach for engineering Fc heterodimers that could be used to engineer other heterodimeric protein-protein interactions through directed evolution combined with yeast surface display. PMID:26675656

  6. Improved method for assembly of hemeprotein neuronal NO-synthase heterodimers.

    Science.gov (United States)

    Morishima, Yoshihiro; Zhang, Haoming; Lau, Miranda; Osawa, Yoichi

    2016-10-15

    The assembly of mutated and wild type monomers into functional heterodimeric hemeproteins has provided important mechanistic insights. As in the case of NO synthase (NOS), the existing methods to make such heterodimeric NOSs are inefficient and labor intensive with typical yields of about 5%. We have found that expression of neuronal NOS heterodimers in insect cells, where we take advantage of an exogenous heme-triggered chaperone-assisted assembly process, provides an approximately 43% yield in heterodimeric NOS. In contrast, in Escherichia coli little heterodimerization occurred. Thus, insect cells are preferred and may represent a valuable method for assembly of other dimeric hemeproteins. PMID:27487179

  7. Structural basis of asymmetry in the human immunodeficiency virus type 1 reverse transcriptase heterodimer.

    OpenAIRE

    J. Wang; Smerdon, S J; J. Jäger; Kohlstaedt, L A; Rice, P A; Friedman, J M; Steitz, T. A.

    1994-01-01

    The reverse transcriptase from human immunodeficiency virus type 1 is a heterodimer consisting of one 66-kDa and one 51-kDa subunit. The p66 subunit contains both a polymerase and an RNase H domain; proteolytic cleavage of p66 removes the RNase H domain to yield the p51 subunit. Although the polymerase domain of p66 folds into an open, extended structure containing a large active-site cleft, that of p51 is closed and compact. The connection subdomain, which lies between the polymerase and RNa...

  8. Acquired phototrophy through retention of functional chloroplasts increases growth efficiency of the sea slug Elysia viridis.

    Directory of Open Access Journals (Sweden)

    Finn A Baumgartner

    Full Text Available Photosynthesis is a fundamental process sustaining heterotrophic organisms at all trophic levels. Some mixotrophs can retain functional chloroplasts from food (kleptoplasty, and it is hypothesized that carbon acquired through kleptoplasty may enhance trophic energy transfer through increased host growth efficiency. Sacoglossan sea slugs are the only known metazoans capable of kleptoplasty, but the relative fitness contributions of heterotrophy through grazing, and phototrophy via kleptoplasts, are not well understood. Fitness benefits (i.e. increased survival or growth of kleptoplasty in sacoglossans are commonly studied in ecologically unrealistic conditions under extended periods of complete darkness and/or starvation. We compared the growth efficiency of the sacoglossan Elysia viridis with access to algal diets providing kleptoplasts of differing functionality under ecologically relevant light conditions. Individuals fed Codium fragile, which provide highly functional kleptoplasts, nearly doubled their growth efficiency under high compared to low light. In contrast, individuals fed Cladophora rupestris, which provided kleptoplasts of limited functionality, showed no difference in growth efficiency between light treatments. Slugs feeding on Codium, but not on Cladophora, showed higher relative electron transport rates (rETR in high compared to low light. Furthermore, there were no differences in the consumption rates of the slugs between different light treatments, and only small differences in nutritional traits of algal diets, indicating that the increased growth efficiency of E. viridis feeding on Codium was due to retention of functional kleptoplasts. Our results show that functional kleptoplasts from Codium can provide sacoglossan sea slugs with fitness advantages through photosynthesis.

  9. A taxonomic review of the Dark-winged Trumpeter Psophia viridis (Aves: Gruiformes: Psophiidae

    Directory of Open Access Journals (Sweden)

    Marina Oppenheimer

    2009-01-01

    Full Text Available The Dark-winged Trumpeter, Psophia viridis (Gruiformes, Psophiidae is a Brazilian endemic species and includes three subspecies: Psophia viridis viridis Spix, 1825; Psophia v. dextralis Conover, 1934, and Psophia v. obscura Pelzeln, 1857, as well as P. v. interjecta Griscom & Greenway, 1937, whose validity has been questioned by several authors. These taxa are allopatric in distribution along the south of the Amazon River, although the precise limits of their distribution still remain unknown. This complex has never been taxonomically reviewed and this work aims to test the validity of its taxa based on the Phylogenetic Species Concept. Morphometrical characters and plumage colour patterns were analyzed, and the distribution of the taxa was also revised. In this study, 108 specimens from 41 localities were examined (all types included, with each reliable literature-based locality being included in order to delimit the geographical distribution of the complex. Morphometrical data did not point out significant differences between the taxa, also showing no sexual dimorphism among them. Meanwhile, plumage characters showed consistent and distinct patterns for each of the taxa, except for P. v. interjecta, whose features indicated by authors as diagnosable are the result of individual variation. No clinal variation or intergradation were observed, even at regions close to the rivers headwaters, where supposedly populations could be in contact. It is suggested that the currently accepted subspecies be elevated to the species level, such as: Psophia viridis Spix, 1825, distributed in the Madeira-Tapajós interfluvium, P. dextralis, found in the Tapajós-Tocantins interfluvium, and P. obscura, which occurs from the right bank of the Tocantins River to the west of the State of Maranhão.Os jacamins-de-costas-verdes, Psophia viridis (Gruiformes, Psophiidae são endêmicos da Amazônia brasileira e contam, atualmente, com três subespécies reconhecidas

  10. Prevalence of airborne allergenic Amaranthus viridis pollen in seven different regions of Saudi Arabia

    International Nuclear Information System (INIS)

    Amaranthus pollen grains are known to have highly allergenic and potential cause of respiratory allergic diseases. Nevertheless, data on the prevalence of Amaranthus pollen in the environment is limited and almost non-existent for Saudi Arabia. We conducted an investigation to record the airborne incidence of A.viridis and other allergenic pollen in Al-Khobar, Dammam, Hail, Jeddah, Jizan, Qassim and Taif, using Burkard Volumetric Samplers. The samples were operated continuously for one year at each location. The data revealed A.viridis as one of the major components of outdoor airspora, constituting a maximum of 96% of total pollen counts in Hail, followed by Al-Khobar (89%), Jeddah (87%), Qassim (85%), Taif (84%), Dammam (83%) and Jizan (61%). These higher percentages contributed largely to the total weed pollen catch during August to November in all seven regions. In addition, the data also showed that A. virdis pollen were present throughout the year with distinct seasonal variations. The diel periodicities for at least five sites averaged over a year showed mid-day to early evening maxima. The maximum concentration approached 3000 mt. cube of air in October and 1827 mt. cube of air in September. The data also exhibited, a seasonal pattern, in their maximum appearance. Further studies related to biochemical and allergological aspects are needed to confirm the allergenic impact of Amaranthus pollen and sensitization in allergic individuals in the Kingdom of Saudi Arabia. (author)

  11. Urea transport across urinary bladder and salt acclimation in toad (Bufo viridis).

    Science.gov (United States)

    Shpun, S; Katz, U

    1990-04-01

    The fluxes of urea across the urinary bladder of the toad Bufo viridis have been studied under conditions of acclimation to tap water or 500 mosM NaCl solution. The [14C]urea fluxes were measured simultaneously with [3H]inulin to test for nonspecific leakage. The fluxes are quite high (Ktrans = 75 x 10(-7) cm/s at 5 mmol/l urea) and are similar in either the mucosal-to-serosal or the opposite direction. "Summer" rates were five to six times higher than the "winter" rates. Antidiuretic hormone (ADH), theophylline, and forskolin increased the fluxes to variable degrees (two to five times), similar in the two acclimation conditions. Phloretin inhibited the urea fluxes by nearly 50%. 1,3-Dimethylurea and thiourea, but not acetamide, competed with the urea fluxes effectively. The fluxes of urea were not affected by the osmotic water flow, although both responded to ADH. It is concluded that urea transport across the urinary bladder of B. viridis is by facilitated diffusion through a specific pathway independent of water flux. The inhibitory effect of the structural analogues on the urea flux was affected by salt acclimation, whereas most other characteristics did not differ significantly at 5 mmol/l external urea under the two conditions of acclimation. PMID:2331031

  12. Molecular cloning and characterization of a trehalose-6-phosphate synthase/phosphatase from Dunaliella viridis.

    Science.gov (United States)

    Zhang, Nan; Wang, Fei; Meng, Xiangzong; Luo, Saifan; Li, Qiyun; Dong, Hongyun; Xu, Zhengkai; Song, Rentao

    2011-04-01

    Dunaliella is a group of green algae with exceptional stress tolerance capability, and is considered as an important model organism for stress tolerance study. Here we cloned a TPS (trehalose-6-phosphate synthase) gene from Dunaliella viridis and designated it as DvTPS (D. viridis trehalose-6-phosphate synthase/phosphatase).The DvTPS cDNA contained an ORF of 2793 bp encoding 930 aa. DvTPS had both TPS and TPP domain and belonged to the Group II TPS/TPP fusion gene family. Southern blots showed it has a single copy in the genome. Genome sequence analysis revealed that it has 18 exons and 17 introns. DvTPS had a constitutive high expression level under various NaCl culture conditions, however, could be induced by salt shock. Promoter analysis indicated there were ten STREs (stress response element) in its promoter region, giving a possible explanation of its inducible expression pattern upon salt shock. Yeast functional complementation analysis showed that DvTPS had neither TPS nor TPP activity. However, DvTPS could improve the salt tolerance of yeast salt sensitive mutant G19. Our results indicated that despite DvTPS showed significant similarity with TPS/TPP, its real biological function is still remained to be revealed. PMID:20878239

  13. Anti-HMG-CoA Reductase, Antioxidant, and Anti-Inflammatory Activities of Amaranthus viridis Leaf Extract as a Potential Treatment for Hypercholesterolemia.

    Science.gov (United States)

    Salvamani, Shamala; Gunasekaran, Baskaran; Shukor, Mohd Yunus; Shaharuddin, Noor Azmi; Sabullah, Mohd Khalizan; Ahmad, Siti Aqlima

    2016-01-01

    Inflammation and oxidative stress are believed to contribute to the pathology of several chronic diseases including hypercholesterolemia (elevated levels of cholesterol in blood) and atherosclerosis. HMG-CoA reductase inhibitors of plant origin are needed as synthetic drugs, such as statins, which are known to cause adverse effects on the liver and muscles. Amaranthus viridis (A. viridis) has been used from ancient times for its supposedly medically beneficial properties. In the current study, different parts of A. viridis (leaf, stem, and seed) were evaluated for potential anti-HMG-CoA reductase, antioxidant, and anti-inflammatory activities. The putative HMG-CoA reductase inhibitory activity of A. viridis extracts at different concentrations was determined spectrophotometrically by NADPH oxidation, using HMG-CoA as substrate. A. viridis leaf extract revealed the highest HMG-CoA reductase inhibitory effect at about 71%, with noncompetitive inhibition in Lineweaver-Burk plot analysis. The leaf extract showed good inhibition of hydroperoxides, 2,2-diphenyl-1-picrylhydrazyl (DPPH), nitric oxide (NO), and ferric ion radicals in various concentrations. A. viridis leaf extract was proven to be an effective inhibitor of hyaluronidase, lipoxygenase, and xanthine oxidase enzymes. The experimental data suggest that A. viridis leaf extract is a source of potent antioxidant and anti-inflammatory agent and may modulate cholesterol metabolism by inhibition of HMG-CoA reductase. PMID:27051453

  14. Anti-HMG-CoA Reductase, Antioxidant, and Anti-Inflammatory Activities of Amaranthus viridis Leaf Extract as a Potential Treatment for Hypercholesterolemia

    Directory of Open Access Journals (Sweden)

    Shamala Salvamani

    2016-01-01

    Full Text Available Inflammation and oxidative stress are believed to contribute to the pathology of several chronic diseases including hypercholesterolemia (elevated levels of cholesterol in blood and atherosclerosis. HMG-CoA reductase inhibitors of plant origin are needed as synthetic drugs, such as statins, which are known to cause adverse effects on the liver and muscles. Amaranthus viridis (A. viridis has been used from ancient times for its supposedly medically beneficial properties. In the current study, different parts of A. viridis (leaf, stem, and seed were evaluated for potential anti-HMG-CoA reductase, antioxidant, and anti-inflammatory activities. The putative HMG-CoA reductase inhibitory activity of A. viridis extracts at different concentrations was determined spectrophotometrically by NADPH oxidation, using HMG-CoA as substrate. A. viridis leaf extract revealed the highest HMG-CoA reductase inhibitory effect at about 71%, with noncompetitive inhibition in Lineweaver-Burk plot analysis. The leaf extract showed good inhibition of hydroperoxides, 2,2-diphenyl-1-picrylhydrazyl (DPPH, nitric oxide (NO, and ferric ion radicals in various concentrations. A. viridis leaf extract was proven to be an effective inhibitor of hyaluronidase, lipoxygenase, and xanthine oxidase enzymes. The experimental data suggest that A. viridis leaf extract is a source of potent antioxidant and anti-inflammatory agent and may modulate cholesterol metabolism by inhibition of HMG-CoA reductase.

  15. Cultivation of green mussel, Perna viridis L., on a floating raft in an estuary along the west coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    Rivonker, C.U.; Ansari, Z.A.; Parulekar, A.H.

    Total production of green mussels, Perna viridis, grown on a raft (16 m sup(2)) for 1 year was 2144.64 kg and biomass (meat weight) was 1040.00 kg. Annual production (P) and biomass (B) estimated were 33.51 and 16.25 kg m sup(-1) respectively...

  16. Genetic structure and long-distance dispersal in populations of the wingless pest springtail, Sminthurus viridis (Collembola: Sminthuridae).

    Science.gov (United States)

    Roberts, John M K; Weeks, Andrew R

    2011-02-01

    The lucerne flea, Sminthurus viridis (Collembola: Sminthuridae) (L.) is a major pest of broadacre agriculture across southern Australia. Few molecular studies have been conducted on S. viridis and none have examined its population genetics, despite the importance for developing effective control strategies. Here, we characterize the genetic structure of Australian populations using three allozyme and eight microsatellite loci, as well as sequencing a fragment of the mitochondrial DNA cytochrome oxidase I gene. We found that S. viridis in Australia are diploid, sexually reproducing and exhibit significant population structure as a result of limited gene flow. Despite significant differentiation between populations, there was very low cytochrome oxidase subunit I (COI) gene sequence variation, indicating the presence of a single species in Australia. The observed structure only marginally complied with an 'isolation by distance' model with human-mediated long-distance dispersal likely occurring. Allozymes and microsatellites gave very similar FST estimates, although differences found for novel alternative estimates of differentiation suggest that the allozymes did not capture the full extent of the population structure. These results highlight that control strategies may need to vary for locally adapted S. viridis populations and strategies aimed at limiting the spread of any future pesticide resistance will need to manage the effects of human-mediated dispersal. PMID:21219669

  17. Modulation of antioxidant and biotransformation enzymes in the gills of Perna viridis (L.) exposed to water accomodate fraction of diesel

    Digital Repository Service at National Institute of Oceanography (India)

    Jena, K.B.; Verlecar, X.N.; Chainy, G.B.N.

    Investigations on the effect of oils on the oxidative stress and antioxidant molecules in gills of Perna viridis were carried out under controlled laboratory conditions. For this purpose water accommodate fraction of diesel oil at 0.5 arid 5% were...

  18. Natural high pCO2 increases autotrophy in Anemonia viridis (Anthozoa) as revealed from stable isotope (C, N) analysis.

    Science.gov (United States)

    Horwitz, Rael; Borell, Esther M; Yam, Ruth; Shemesh, Aldo; Fine, Maoz

    2015-01-01

    Contemporary cnidarian-algae symbioses are challenged by increasing CO2 concentrations (ocean warming and acidification) affecting organisms' biological performance. We examined the natural variability of carbon and nitrogen isotopes in the symbiotic sea anemone Anemonia viridis to investigate dietary shifts (autotrophy/heterotrophy) along a natural pCO2 gradient at the island of Vulcano, Italy. δ(13)C values for both algal symbionts (Symbiodinium) and host tissue of A. viridis became significantly lighter with increasing seawater pCO2. Together with a decrease in the difference between δ(13)C values of both fractions at the higher pCO2 sites, these results indicate there is a greater net autotrophic input to the A. viridis carbon budget under high pCO2 conditions. δ(15)N values and C/N ratios did not change in Symbiodinium and host tissue along the pCO2 gradient. Additional physiological parameters revealed anemone protein and Symbiodinium chlorophyll a remained unaltered among sites. Symbiodinium density was similar among sites yet their mitotic index increased in anemones under elevated pCO2. Overall, our findings show that A. viridis is characterized by a higher autotrophic/heterotrophic ratio as pCO2 increases. The unique trophic flexibility of this species may give it a competitive advantage and enable its potential acclimation and ecological success in the future under increased ocean acidification. PMID:25739995

  19. Functional complementation of a nitrate reductase defective mutant of a green alga Dunaliella viridis by introducing the nitrate reductase gene.

    Science.gov (United States)

    Sun, Yu; Gao, Xiaoshu; Li, Qiyun; Zhang, Qingqi; Xu, Zhengkai

    2006-08-01

    Nitrate reductase (NR) catalyzes NAD (P) H dependent reduction of nitrate to nitrite. Transformation systems have been established in several species of green algae by nitrate reductase gene functional complementation. In this report, an endogenous NR cDNA (3.4 kb) and a genomic fragment (14.6 kb) containing the NR gene (DvNIA1) were isolated from the D. viridis cDNA and genomic libraries respectively. Southern blot and Northern blot analyses showed that this gene exists as a single copy in D. viridis and is induced by nitrate. To obtain a NR defective mutant as a recipient strain, D. viridis cells were treated with a chemical mutagen and then cultured on a chlorate-containing plate to enrich chlorate tolerant mutants. Southern analysis showed that one isolate, B14, had a deletion in the DvNIA1 gene region. Using electroporation conditions determined in this laboratory, plasmid pDVNR containing the intact DvNIA1 gene has been electroporated into the defective mutant B14. Strains retaining a nitrate assimilation phenotype were obtained from nitrate plates after spreading the electroporated cells. In some individual strains, transcription of the introduced gene was detected. NR activity in these strains was slightly higher than that in the defective B14 cell, but excretion of nitrite into culture media was almost as high as that of the wild-type cell. Possible episomal presence of the introduced DNA in D. viridis is discussed. PMID:16797881

  20. Heterodimers and homodimers of inhibin subunits have different paracrine action in the modulation of luteinizing hormone-stimulated androgen biosynthesis

    International Nuclear Information System (INIS)

    Inhibin, a gonadal hormone capable of preferential suppression of pituitary follicle-stimulating hormone (FSH) secretion, has recently been purified. The major form of this protein is an αβ heterodimer encoded by two separate genes. In contrast to the FSH-suppressing action of the αβ heterodimer, the ββ homodimer stimulates FSH secretion. Luteinizing hormone (LH)-secreting pituitary cells and gonadal androgen-producing cells have long been shown to form a closed-loop feedback axis. Based on recent studies demonstrated the FSH stimulation of inhibin biosynthesis by ovarian granulosa and testis Sertoli cells, an additional closed-loop feedback axis exists between pituitary FSH- and gonadal inhibin-producing cells. Because uncharacterized Sertoli cell factors have been suggested to either stimulate or inhibit androgen production by testicular Leydig cells, the authors have tested the intragonadal paracrine actions of heterodimers and homodimers of inhibin subunits. In primary cultures of testis cells, the αβ heterodimer of inhibin enhances Leydig cell androgen biosynthesis stimulated by LH, whereas the ββ homodimer suppresses androgen production. The data indicate that the inhibin-related gene products synthesized by Sertoli and granulosa cells may form heterodimers or homodimers to serve as intragonadal paracrine signals in the modulation of LH-stimulated androgen biosynthesis and allow cross-communication between the two feedback loops

  1. Subunits of the Drosophila actin-capping protein heterodimer regulate each other at multiple levels.

    Directory of Open Access Journals (Sweden)

    Ana Rita Amândio

    Full Text Available The actin-Capping Protein heterodimer, composed of the α and β subunits, is a master F-actin regulator. In addition to its role in many cellular processes, Capping Protein acts as a main tumor suppressor module in Drosophila and in humans, in part, by restricting the activity of Yorkie/YAP/TAZ oncogenes. We aimed in this report to understand how both subunits regulate each other in vivo. We show that the levels and capping activities of both subunits must be tightly regulated to control F-actin levels and consequently growth of the Drosophila wing. Overexpressing capping protein α and β decreases both F-actin levels and tissue growth, while expressing forms of Capping Protein that have dominant negative effects on F-actin promote tissue growth. Both subunits regulate each other's protein levels. In addition, overexpressing one of the subunit in tissues knocked-down for the other increases the mRNA and protein levels of the subunit knocked-down and compensates for its loss. We propose that the ability of the α and β subunits to control each other's levels assures that a pool of functional heterodimer is produced in sufficient quantities to restrict the development of tumor but not in excess to sustain normal tissue growth.

  2. Subunits of the Drosophila actin-capping protein heterodimer regulate each other at multiple levels.

    Science.gov (United States)

    Amândio, Ana Rita; Gaspar, Pedro; Whited, Jessica L; Janody, Florence

    2014-01-01

    The actin-Capping Protein heterodimer, composed of the α and β subunits, is a master F-actin regulator. In addition to its role in many cellular processes, Capping Protein acts as a main tumor suppressor module in Drosophila and in humans, in part, by restricting the activity of Yorkie/YAP/TAZ oncogenes. We aimed in this report to understand how both subunits regulate each other in vivo. We show that the levels and capping activities of both subunits must be tightly regulated to control F-actin levels and consequently growth of the Drosophila wing. Overexpressing capping protein α and β decreases both F-actin levels and tissue growth, while expressing forms of Capping Protein that have dominant negative effects on F-actin promote tissue growth. Both subunits regulate each other's protein levels. In addition, overexpressing one of the subunit in tissues knocked-down for the other increases the mRNA and protein levels of the subunit knocked-down and compensates for its loss. We propose that the ability of the α and β subunits to control each other's levels assures that a pool of functional heterodimer is produced in sufficient quantities to restrict the development of tumor but not in excess to sustain normal tissue growth.

  3. Taste substance binding elicits conformational change of taste receptor T1r heterodimer extracellular domains.

    Science.gov (United States)

    Nango, Eriko; Akiyama, Shuji; Maki-Yonekura, Saori; Ashikawa, Yuji; Kusakabe, Yuko; Krayukhina, Elena; Maruno, Takahiro; Uchiyama, Susumu; Nuemket, Nipawan; Yonekura, Koji; Shimizu, Madoka; Atsumi, Nanako; Yasui, Norihisa; Hikima, Takaaki; Yamamoto, Masaki; Kobayashi, Yuji; Yamashita, Atsuko

    2016-01-01

    Sweet and umami tastes are perceived by T1r taste receptors in oral cavity. T1rs are class C G-protein coupled receptors (GPCRs), and the extracellular ligand binding domains (LBDs) of T1r1/T1r3 and T1r2/T1r3 heterodimers are responsible for binding of chemical substances eliciting umami or sweet taste. However, molecular analyses of T1r have been hampered due to the difficulties in recombinant expression and protein purification, and thus little is known about mechanisms for taste perception. Here we show the first molecular view of reception of a taste substance by a taste receptor, where the binding of the taste substance elicits a different conformational state of T1r2/T1r3 LBD heterodimer. Electron microscopy has showed a characteristic dimeric structure. Förster resonance energy transfer and X-ray solution scattering have revealed the transition of the dimerization manner of the ligand binding domains, from a widely spread to compactly organized state upon taste substance binding, which may correspond to distinct receptor functional states. PMID:27160511

  4. Trace element profiles of the sea anemone Anemonia viridis living nearby a natural CO2 vent

    Directory of Open Access Journals (Sweden)

    Rael Horwitz

    2014-09-01

    Full Text Available Ocean acidification (OA is not an isolated threat, but acts in concert with other impacts on ecosystems and species. Coastal marine invertebrates will have to face the synergistic interactions of OA with other global and local stressors. One local factor, common in coastal environments, is trace element contamination. CO2 vent sites are extensively studied in the context of OA and are often considered analogous to the oceans in the next few decades. The CO2 vent found at Levante Bay (Vulcano, NE Sicily, Italy also releases high concentrations of trace elements to its surrounding seawater, and is therefore a unique site to examine the effects of long-term exposure of nearby organisms to high pCO2 and trace element enrichment in situ. The sea anemone Anemonia viridis is prevalent next to the Vulcano vent and does not show signs of trace element poisoning/stress. The aim of our study was to compare A. viridis trace element profiles and compartmentalization between high pCO2 and control environments. Rather than examining whole anemone tissue, we analyzed two different body compartments—the pedal disc and the tentacles, and also examined the distribution of trace elements in the tentacles between the animal and the symbiotic algae. We found dramatic changes in trace element tissue concentrations between the high pCO2/high trace element and control sites, with strong accumulation of iron, lead, copper and cobalt, but decreased concentrations of cadmium, zinc and arsenic proximate to the vent. The pedal disc contained substantially more trace elements than the anemone’s tentacles, suggesting the pedal disc may serve as a detoxification/storage site for excess trace elements. Within the tentacles, the various trace elements displayed different partitioning patterns between animal tissue and algal symbionts. At both sites iron was found primarily in the algae, whereas cadmium, zinc and arsenic were primarily found in the animal tissue. Our data

  5. Trace element profiles of the sea anemone Anemonia viridis living nearby a natural CO2 vent.

    Science.gov (United States)

    Horwitz, Rael; Borell, Esther M; Fine, Maoz; Shaked, Yeala

    2014-01-01

    Ocean acidification (OA) is not an isolated threat, but acts in concert with other impacts on ecosystems and species. Coastal marine invertebrates will have to face the synergistic interactions of OA with other global and local stressors. One local factor, common in coastal environments, is trace element contamination. CO2 vent sites are extensively studied in the context of OA and are often considered analogous to the oceans in the next few decades. The CO2 vent found at Levante Bay (Vulcano, NE Sicily, Italy) also releases high concentrations of trace elements to its surrounding seawater, and is therefore a unique site to examine the effects of long-term exposure of nearby organisms to high pCO2 and trace element enrichment in situ. The sea anemone Anemonia viridis is prevalent next to the Vulcano vent and does not show signs of trace element poisoning/stress. The aim of our study was to compare A. viridis trace element profiles and compartmentalization between high pCO2 and control environments. Rather than examining whole anemone tissue, we analyzed two different body compartments-the pedal disc and the tentacles, and also examined the distribution of trace elements in the tentacles between the animal and the symbiotic algae. We found dramatic changes in trace element tissue concentrations between the high pCO2/high trace element and control sites, with strong accumulation of iron, lead, copper and cobalt, but decreased concentrations of cadmium, zinc and arsenic proximate to the vent. The pedal disc contained substantially more trace elements than the anemone's tentacles, suggesting the pedal disc may serve as a detoxification/storage site for excess trace elements. Within the tentacles, the various trace elements displayed different partitioning patterns between animal tissue and algal symbionts. At both sites iron was found primarily in the algae, whereas cadmium, zinc and arsenic were primarily found in the animal tissue. Our data suggests that A. viridis

  6. Development of fibre and parenchyma cells in the bamboo Phyllostachys viridi-glaucescens

    CERN Document Server

    Crow, E

    2000-01-01

    The development of the shoot apex and the ontogeny of fibre and parenchyma cells in elongating shoots of the bamboo Phyllostachys viridi-glaucescens (Carr.) Riv. and Riv., seen under the light microscope is described. Fibre cells differentiated from cells of the procambium, whilst the parenchyma cells differentiated from cells of the primary thickening meristem which surround the procambium strands. Three stages of early fibre and parenchyma cell development were identified and these are referred to in subsequent studies of cell wall development. The cytology of developing internodal fibre and parenchyma cells seen under the transmission electron microscope (TEM) is described. There were few ultrastructural features to distinguish the two cell types. Thiery's PATAg test was performed to identify organelles which may be associated with the synthesis of polysaccharides destined for the cell wall. The ultrastructural results are discussed in terms of the process of cell wall deposition. Observations were made of...

  7. Ein Fund von Buxbaumia viridis (Moug. ex Lam. & DC.) Brid. ex Moug. & Nestl. im Thüringer Muschelkalk-Hügelland

    OpenAIRE

    Eckstein, Jan

    2007-01-01

    Ein überraschender Fund von B. viridis gelang dem Autor am 14. Januar 2007 in der Umgebung von Jena. In Deutschland wird Buxbaumia viridis als "stark gefährdet" eingestuft; aktuelle Vorkommen beschränken sind auf Baden-Württemberg und Bayern. In Thüringen wurde die Art zuletzt 1975 südwestlich von Suhl nachgewiesen. Der Fundort bei Jena liegt im Muschelkalk-Hügelland im Naturraum der Ilm-Saale-Platte.

  8. Morphological, behavioral and biological aspects of Azya luteipes Mulsant fed on Coccus viridis (Green

    Directory of Open Access Journals (Sweden)

    Juliana Nais

    2012-02-01

    Full Text Available One of the major pests of nursery seedlings of coffee (Coffea arabica L. is the green scale, Coccus viridis (Green (Hemiptera: Coccidae. The main predators of this species are beetles of the family Coccinellidae, especially Azya luteipes Mulsant. Morphological, behavioral and biological aspects of A. luteipes feeding on C. viridis on coffee plants were examined under laboratory conditions. Tests were conducted in room temperature at 28 ± 2 ºC. A. luteipes oviposits on the underside of the scale's body, laying two to four eggs per insect. The eggs have a subelliptical form and a white-clear color, and the incubation period is 8.3 ± 1.2 days. The number of eggs laid per female per day varies between eight and ten. A. luteipes undergoes four larval instars with durations of 2.0 ± 0, 3.2 ± 0.5, 3.6 ± 0.5 and 4.6 ± 0 days for the 1st, 2nd, 3rd and 4th instars, respectively. The average durations of the prepupal and pupal stages were 2.0 ± 0 and 10.9 ± 1.3 days, respectively. The viability of the larvae during each instar was 91.9, 89.3, 90.2 and 96.4 %, respectively, and the viabilities of prepupae and pupae were 99.1 and 98.2 %. The average duration of the egg-adult cycle was 34.3 ± 2.6 days, and the sex ratio was 0.52 %. Females presented a gray-colored head, while males presented a yellow head.

  9. Photosynthetic performance of Setaria viridis to soil drought and rewatering alternations

    Institute of Scientific and Technical Information of China (English)

    Ya Yong Luo; Xue Yong Zhao; RuiLian Zhou; YingXin Huang; XiaoAn Zuo

    2009-01-01

    The ability of psammophyte (a plant that grows in sand or sandy soil) to withstand and recover from severe droughts is crucial for desertifieation control and restoration of degraded vegetation in semi-arid sandy land in northern China. Responses of the photo-synthetic gas exchange and chlorophyll fluorescence of an annual (Setaria viridis) were measured through three cycles of soil drying and rewatering. Results showed that the net photosynthesis rate (Pn) decreased by 95 percent, 91 percent, and 61 percent at end of three drought periods; the stomatal conductance (gs) decreased by 72 percent, 73 percent, and 53 percent; the transpiration rate (Tr) decreased by 70 percent, 69 percent, and 37 percent; and water-use efficiency (WUE) decreased by 83 percent, 69 percent,and 38 percent. At the same time, the trapping probability with no dark adaptation (Fv'/FM') decreased by 70 percent, 12 percent,and 10 percent, while the electron transport per cross-section (ET0'/CS'0) decreased by 80 percent, 45 percent, and 13 percent. The intercellular CO2 (Ci) increased by 1.77, 1.02, and 0.66 times, and the dissipation per cross-section (DI0'/CS0') increased by 98 percent, 28 percent, and 22 percent. These results indicated that S. viridis was subjected to photoinhibition and some nonstomatal limitation of photosynthesis under drought. However, the above photosynthetic characteristics were restored to control values after three or four days of rewatering. The capability to recover from drought may contribute to the plant's use of water as efficiently as possible. Furthermore, during the subsequent drought spells, suppression of Pn, gs, Tr, Fv'/FM', and ET0'/CS0' decreased or slowed down following the drying and rewatering alternations, especially in the third drought spell.

  10. Molecular cloning and characterization of a vacuolar H+₋pyrophosphatase from Dunaliella viridis.

    Science.gov (United States)

    Meng, Xiangzong; Xu, Zhengkai; Song, Rentao

    2011-06-01

    The halotolerant alga Dunaliella adapts to exceptionally high salinity and possesses efficient mechanisms for regulating intracellular Na(+). In plants, sequestration of Na(+) into the vacuole is driven by the electrochemical H(+) gradient generated by H(+) pumps, and this Na(+) sequestration is one mechanism that confers salt tolerance to plants. To investigate the role of vacuolar H(+) pumps in the salt tolerance of Dunaliella, we isolated the cDNA of the vacuolar proton-translocating inorganic pyrophosphatase (V-H(+)-PPase) from Dunaliella viridis. The DvVP cDNA is 2,984 bp in length, codes for a polypeptide of 762 amino acids and has 15 transmembrane domains. The DvVP protein is highly similar to V-H(+)-PPases from other green algae and higher plant species, in terms of its amino acid sequence and its transmembrane model. A phylogenetic analysis of V-H(+)-PPases revealed the close relationship of Dunaliella to green algal species of Charophyceae and land plants. The heterologous expression of DvVP in the yeast mutant G19 (Δena1-4) suppressed Na(+) hypersensitivity, and a GFP-fusion of DvVP localized to the vacuole membranes in yeast, indicating that DvVP encodes a functional V-H(+)-PPase. A northern blot analysis showed a decrease in the transcript abundance of DvVP at higher salinity in D. viridis cells, which is in contrast to the salt-induced upregulation of V-H(+)-PPase in some plants, suggesting that the expression of DvVP under salt stress may be regulated by different mechanisms in Dunaliella. This study not only enriched our knowledge about the biological functions of V-H(+)-PPases in different organisms but also improved our understanding of the molecular mechanism of salt tolerance in Dunaliella. PMID:21086174

  11. Changes in soil diversity and global activities following invasions of the exotic invasive plant, Amaranthus viridis L., decrease the growth of native sahelian Acacia species.

    Science.gov (United States)

    Sanon, Arsene; Béguiristain, Thierry; Cébron, Aurelie; Berthelin, Jacques; Ndoye, Ibrahima; Leyval, Corinne; Sylla, Samba; Duponnois, Robin

    2009-10-01

    The objectives of this study were to determine whether the invasive plant Amaranthus viridis influenced soil microbial and chemical properties and to assess the consequences of these modifications on native plant growth. The experiment was conducted in Senegal at two sites: one invaded by A. viridis and the other covered by other plant species. Soil nutrient contents as well as microbial community density, diversity and functions were measured. Additionally, five sahelian Acacia species were grown in (1) soil disinfected or not collected from both sites, (2) uninvaded soil exposed to an A. viridis plant aqueous extract and (3) soil collected from invaded and uninvaded sites and inoculated or not with the arbuscular mycorrhizal (AM) fungus Glomus intraradices. The results showed that the invasion of A. viridis increased soil nutrient availability, bacterial abundance and microbial activities. In contrast, AM fungi and rhizobial development and the growth of Acacia species were severely reduced in A. viridis-invaded soil. Amaranthus viridis aqueous extract also exhibited an inhibitory effect on rhizobial growth, indicating an antibacterial activity of this plant extract. However, the inoculation of G. intraradices was highly beneficial to the growth and nodulation of Acacia species. These results highlight the role of AM symbiosis in the processes involved in plant coexistence and in ecosystem management programs that target preservation of native plant diversity.

  12. Response regulator heterodimer formation controls a key stage in Streptomyces development.

    Directory of Open Access Journals (Sweden)

    Mahmoud M Al-Bassam

    2014-08-01

    Full Text Available The orphan, atypical response regulators BldM and WhiI each play critical roles in Streptomyces differentiation. BldM is required for the formation of aerial hyphae, and WhiI is required for the differentiation of these reproductive structures into mature spores. To gain insight into BldM function, we defined the genome-wide BldM regulon using ChIP-Seq and transcriptional profiling. BldM target genes clustered into two groups based on their whi gene dependency. Expression of Group I genes depended on bldM but was independent of all the whi genes, and biochemical experiments showed that Group I promoters were controlled by a BldM homodimer. In contrast, Group II genes were expressed later than Group I genes and their expression depended not only on bldM but also on whiI and whiG (encoding the sigma factor that activates whiI. Additional ChIP-Seq analysis showed that BldM Group II genes were also direct targets of WhiI and that in vivo binding of WhiI to these promoters depended on BldM and vice versa. We go on to demonstrate that BldM and WhiI form a functional heterodimer that controls Group II promoters, serving to integrate signals from two distinct developmental pathways. The BldM-WhiI system thus exemplifies the potential of response regulator heterodimer formation as a mechanism to expand the signaling capabilities of bacterial cells.

  13. The proportion of hybrid heterodimers in homozygous or doubly heterozygous beta chain variant hemoglobinopathies associated with alpha chain hemoglobin variants.

    Science.gov (United States)

    Krauss, J S

    2000-10-01

    Four alpha genes exist on chromosome 16, but one or more of these genes can be deleted in association with Hemoglobin (Hb)G-Philadelphia in cis to alpha-thalassemia-2 in African-Americans. Therefore, the proportion of HbG-Philadelphia in HbG heterozygotes is trimodal at about 25% for alphaGalpha/alpha alpha, 33% for alphaG-/alpha alpha, and 50% for alphaG-/alpha alpha in patients with HbA. Those who are homozygous or doubly heterozygous for beta chain variants (betaX2 or betaXbetaY) have neither HbA nor the alpha chain variant (alphaX2 betaA2), but have hybrid heterodimers (alphaX2 betaX2). The proportion of hybrid heterodimers here should also be trimodal mirroring alpha gene status. Eleven patients were identified: 4 with Hb SSG, 3 with Hb SCG, and 1 each with Hb OCG, HbSSMontgomery, HbSSChicago, and HbSSBourmedes. Heterodimer proportions were: 43.3 +/- 1.5, 33.5 +/- 2.3, and 15.8 +/- 1.1% for 2, 3, and 4 respective alpha genes which had been studied in 8/11 of the patients (r = 0.98), implying that the prime determinant of the proportion of hybrid heterodimers in this patient group is the number of functional alpha genes. PMID:11045763

  14. Synthesis of heterodimer radionuclide nanoparticles for magnetic resonance and single-photon emission computed tomography dual-modality imaging

    Science.gov (United States)

    Zhu, Jing; Zhang, Bin; Tian, Jian; Wang, Jiaqing; Chong, Yu; Wang, Xin; Deng, Yaoyao; Tang, Minghua; Li, Yonggang; Ge, Cuicui; Pan, Yue; Gu, Hongwei

    2015-02-01

    We report a facile synthesis of bifunctional Fe3O4-Ag125I heterodimers for use as dual-modality imaging agents in magnetic resonance (MR) and single-photon emission computed tomography (SPECT). We introduced 125I, which is a clinically used radioisotope, as a SPECT reporter, into Fe3O4-Ag heterodimer nanoparticles to provide a new type of bifunctional contrast agent for MRI and SPECT imaging.We report a facile synthesis of bifunctional Fe3O4-Ag125I heterodimers for use as dual-modality imaging agents in magnetic resonance (MR) and single-photon emission computed tomography (SPECT). We introduced 125I, which is a clinically used radioisotope, as a SPECT reporter, into Fe3O4-Ag heterodimer nanoparticles to provide a new type of bifunctional contrast agent for MRI and SPECT imaging. Electronic supplementary information (ESI) available: Details of general experimental procedures, TEM image. See DOI: 10.1039/c4nr07255c

  15. Observations on a population of the sea anemone Anemonia viridis (Forskal, 1775) in the North Aegean Sea

    Energy Technology Data Exchange (ETDEWEB)

    Chariton Chintiroglou, C. [Thessaloniki, Aristotle Univ. (Greece). Dept. of Zoology

    1996-12-31

    The present paper is concerned with the structural aspects of Anemonia viridis populations found in the North Aegean Sea. It was found that mean wet weight and density of anemone populations increases with depth and distance from shore. Differences in the structure of the Anemonia viridis populations were attributed both to the specific hydrodynamic characteristics of the biotopes and to a number biotic interactions. From our results and t previous investigations the adoption of three different lifestyles by the anemones was assumed.: (1) a colonial form, with population densities around 650 individuals per m{sup 2}, found in substrates exposed to increased hydrodynamism; (2) a colonial form, with lower densities (90 indiv. per m{sup 2}), found in less exposed sites; (3) finally, large individuals in deeper waters chose a solitary lifestyle, as mechanical stresses were much lower.

  16. Complete chloroplast genome sequence of green foxtail (Setaria viridis), a promising model system for C4 photosynthesis.

    Science.gov (United States)

    Wang, Shuo; Gao, Li-Zhi

    2016-09-01

    The complete chloroplast genome of green foxtail (Setaria viridis), a promising model system for C4 photosynthesis, is first reported in this study. The genome harbors a large single copy (LSC) region of 81 016 bp and a small single copy (SSC) region of 12 456  bp separated by a pair of inverted repeat (IRa and IRb) regions of 22 315 bp. GC content is 38.92%. The proportion of coding sequence is 57.97%, comprising of 111 (19 duplicated in IR regions) unique genes, 71 of which are protein-coding genes, four are rRNA genes, and 36 are tRNA genes. Phylogenetic analysis indicated that S. viridis was clustered with its cultivated species S. italica in the tribe Paniceae of the family Poaceae. This newly determined chloroplast genome will provide valuable genetic resources to assist future studies on C4 photosynthesis in grasses. PMID:26305916

  17. The effects of nutrients and secondary compounds of Coffea arabica on the behavior and development of Coccus viridis.

    Science.gov (United States)

    Fernandes, F L; Picanço, M C; Fernandes, M E S; Queiroz, R B; Xavier, V M; Martinez, H E P

    2012-04-01

    Phytochemicals may modify the food quality, reduce a plant's palatability to insects, or defend against pests. This work aimed to study 1) relationships between the nitrogen and potassium levels given to plants in nutritive solutions and the foliar phytochemical concentrations, 2) the effect of nutrients and secondary compounds of Coffea arabica on the behavior of Coccus viridis, and 3) tolerance of C. arabica to losses. Deficient, normal, and excessive nitrogen and potassium fertilization treatments were used. Each treatment had two plants (one infested and one noninfested plant). The contents of phytochemicals in the infested plants' leaves and their dry matter of roots, stems, and leaves as well as the total contents in noninfested plants, were determined. The adults and nymphs of C. viridis were counted for 60 d in all treatments. It was verified that elevated nitrogen and potassium levels in the nutritional solutions led to increased of nymphs and adults of C. viridis to the coffee plants over time. Potassium and nitrogen had both direct and indirect effects on C. viridis. The direct effect was because of the increase of the nitrogen content in the leaves. The indirect effect instead was because of reductions in the caffeine and chlorogenic acid contents in the leaves. This is the first study to show relationship nutrient levels of coffee phytochemicals in response to herbivory by scale insects. Caffeine and chlorogenic acid applied on coffee leaves stimulated the locomotory activity of the green scale, thus reducing their feeding compared with untreated leaves. The elevation of caffeine and chlorogenic acid levels in coffee leaves affect this generalist insect by stimulating the locomotion of crawlers.

  18. Deconstructing a Species-Complex: Geometric Morphometric and Molecular Analyses Define Species in the Western Rattlesnake (Crotalus viridis)

    OpenAIRE

    Davis, Mark A.; Marlis R Douglas; Collyer, Michael L.; Michael E Douglas

    2016-01-01

    Morphological data are a conduit for the recognition and description of species, and their acquisition has recently been broadened by geometric morphometric (GM) approaches that co-join the collection of digital data with exploratory 'big data' analytics. We employed this approach to dissect the Western Rattlesnake (Crotalus viridis) species-complex in North America, currently partitioned by mitochondrial (mt)DNA analyses into eastern and western lineages (two and seven subspecies, respective...

  19. A preliminary study for establishing Perna viridis (Mollusca:Bivalvia) as a biological monitor for pollution in Karachi coastal water

    OpenAIRE

    Zehra, Itrat; Naz, Huma; Naqvi, Iftikhar Imam

    1996-01-01

    Adverse effects of toxic substances on the environmental quality have become a subject of concern in recent years. Toxicity of heavy metals has never been in dispute and therefore their presence in our natural environment is undesirable. This study was undertaken to establish the capability of Perna viridis as a monitor for pollution in the Manora channel. Accumulation of Zinc, Copper, Iron and Manganese by marine mussels, sampled from Manora channel, was determined. Metal load varied markedl...

  20. Expression of the 26S proteasome subunit RPN10 is upregulated by salt stress in Dunaliella viridis.

    Science.gov (United States)

    Sun, Xiaobin; Meng, Xiangzong; Xu, Zhengkai; Song, Rentao

    2010-08-15

    Green algae of the genus Dunaliella can adapt to hypersaline environments and are considered model organisms for salinity tolerance. In an EST analysis in Dunaliella viridis under salt stress, we isolated a salt-inducible cDNA coding for the 26S proteasome subunit RPN10, designated DvRPN10. The DvRPN10 cDNA is 1472 bp and encodes a polypeptide of 377 amino acids. The DvRPN10 protein shares a high similarity to orthologs from other species. The function of DvRPN10 was confirmed by complementation of the yeast Deltarpn10 mutant. Q-PCR analysis of D. viridis cells grown in different salinities revealed that the transcript level of DvRPN10 increased in proportion to the external salinity within a range of 0.5-3 M NaCl, but decreased significantly at extremely high salinities (4-5 M NaCl). When a salinity shock of 1-3 M NaCl was applied to D. viridis cells, DvRPN10 mRNA levels remained steady during the first 36 h, and then gradually elevated to the level observed at 3 M NaCl. The gene structure of DvRPN10 was revealed by sequencing of a BAC clone containing this gene. Possible transcription factor binding sites related to stress tolerance were found in the promoter region of DvRPN10. The expression of DvRPN10 in response to the external salinity suggests that RPN10-mediated protein degradation plays a role in the salinity tolerance of D. viridis. PMID:20430475

  1. Urban secondary sewage: an alternative medium for the culture of Tetraselmis chuii (Prasinophyceae) and Dunaliella viridis (Chlorophyceae)

    OpenAIRE

    Rauquírio André Albuquerque Marinho da Costa; Maria Luise Koening; Sílvio José de Macedo

    2004-01-01

    The effect of different concentrations (10, 20, 30 and 40%) of urban secondary sewage on the growth of Tetraselmis chuii (Prasinophyceae) and Dunaliella viridis (Chlorophyceae) was examined to verify the possibility of its use as an alternative culture medium for these species. Stocks and 700mL duplicate batch cultures were maintained under controlled laboratory conditions. 30% and 40% additions were the most efficient for the growth of both species. Statistical analysis of the adjusted growt...

  2. Cell division in the unicellular microalga Dunaliella viridis depends on phosphorylation of extracellular signal-regulated kinases (ERKs).

    Science.gov (United States)

    Jiménez, Carlos; Cossío, Belén R; Rivard, Christopher J; Berl, Tomás; Capasso, Juan M

    2007-01-01

    In mammalian cells, MAPKs are involved in both stress response (JNK and p38 pathways) and cell proliferation and differentiation [extracellular signal-regulated kinase (ERK)] through protein kinase cascades. Exposure of Dunaliella viridis cell cultures to PD98059, a very specific inhibitor of the ERK signalling pathway, resulted in a total arrest of cell proliferation and a complete dephosphorylation of ERK. As shown by flow cytometry analysis of propidium iodide-stained cells, PD98059 stopped mitosis at the G(2) phase after the S phase has been completed. Multiple physiological parameters such as cell motility and reducing power generation (NADPH) clearly indicate that the treated cells are wholly viable. Exposure of D. viridis to environmental stresses that impair cell division, such as hyperosmotic shock, nitrogen starvation, or sublethal UV irradiation, caused a marked decrease in the phospho-ERK levels as detected by western blot. Two 400 bp polynucleotides from D. viridis with high homologies to published sequences of ERK1 and ERK2 were cloned, sequenced, and submitted to GenBank. Northern blot analysis revealed two mRNA bands of approximately 1.9 kb, consistent with the expected size of ERK proteins ( approximately 40 kDa). Sequence analysis showed that they contained several mitogen-activated protein kinase (MAPK) conserved domains, including II, III, VIb, VII, and the double phosphorylation motif. Interestingly, in D. viridis, this motif was T*DY* instead of the canonic T*EY*. Based on this finding, ERK plant sequences can be divided into two groups, one termed the T*DY* branch and the other termed the T*EY* branch. The molecular and functional data presented here suggest that ERK is a very ancient signalling pathway and that it was already present in the last common ancestor of all eukaryotic cells. PMID:17220513

  3. The role of photo-osmotic adaptation in semi-continuous culture and lipid particle release from Dunaliella viridis

    OpenAIRE

    Ryan W. Davis; Carvalho, Benjamin J.; Jones, Howland D. T.; Singh, Seema

    2014-01-01

    Although great efforts have been made to elucidate the phenotypic responses of alga to varying levels of nutrients, osmotic environments, and photosynthetically active radiation intensities, the role of interactions among these variables is largely nebulous. Here, we describe a general method for establishing and maintaining semi-continuous cultures of the halophilic microalgal production strain, Dunaliella viridis, that is independent of variations in salinity and illumination intensity. Usi...

  4. Comparative feedstock analysis in Setaria viridis L. as a model for C4 bioenergy grasses and Panicoid crop species

    Directory of Open Access Journals (Sweden)

    Carloalberto ePetti

    2013-06-01

    Full Text Available Second generation feedstocks for bioethanol will likely include a sizable proportion of perennial C4 grasses, principally in the Panicoideae clade. The Panicoideae contain agronomically important annual grasses including Zea mays L. (maize, Sorghum bicolor (L. Moench (sorghum, and Saccharum officinarum L. (sugar cane as well as promising second generation perennial feedstocks including Miscanthus x giganteus and Panicum virgatum L. (switchgrass. The underlying complexity of these polyploid grass genomes is a major limitation for their direct manipulation and thus driving a need for rapidly cycling comparative model. Setaria viridis (green millet is a rapid cycling C4 Panicoid grass with a relatively small and sequenced diploid genome and abundant seed production. Stable, transient and protoplast transformation technologies have also been developed for S. viridis making it a potentially excellent model for other C4 bioenergy grasses. Here, the lignocellulosic feedstock composition, cellulose biosynthesis inhibitor (CBI response and saccharification dynamics of S. viridis are compared with the annual s00orghum and maize and the perennial switchgrass bioenergy crops as a baseline study into the applicability for translational research. A genome-wide systematic investigation of the cellulose synthase-A (CesA genes was performed identifying eight candidate sequences. Two-developmental stages; a metabolically active young tissue and b metabolically plateaued (mature material are examined to compare biomass performance metrics.

  5. Photosynthetic performance of Setaria viridis to soil drought and rewatering alternations

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    The ability of psammophyte(a plant that grows in sand or sandy soil) to withstand and recover from severe droughts is crucial for desertification control and restoration of degraded vegetation in semi-arid sandy land in northern China.Responses of the photo-synthetic gas exchange and chlorophyll fluorescence of an annual(Setaria viridis) were measured through three cycles of soil drying and rewatering.Results showed that the net photosynthesis rate(Pn) decreased by 95 percent,91 percent,and 61 percent at end of three drought periods;the stomatal conductance(gs) decreased by 72 percent,73 percent,and 53 percent;the transpiration rate(Tr) decreased by 70 percent,69 percent,and 37 percent;and water-use efficiency(WUE) decreased by 83 percent,69 percent,and 38 percent.At the same time,the trapping probability with no dark adaptation(FV’/FM’) decreased by 70 percent,12 percent,and 10 percent,while the electron transport per cross-section(ET0’/CS’0) decreased by 80 percent,45 percent,and 13 percent.The intercellular CO2(Ci) increased by 1.77,1.02,and 0.66 times,and the dissipation per cross-section(DI0’/CS0’) increased by 98 percent,28 percent,and 22 percent.These results indicated that S.viridis was subjected to photoinhibition and some nonstomatal limitation of photosynthesis under drought.However,the above photosynthetic characteristics were restored to control values after three or four days of rewatering.The capability to recover from drought may contribute to the plant’s use of water as efficiently as possible.Furthermore,during the subsequent drought spells,suppression of Pn,gs,Tr,FV’/FM’,and ET0’/CS0’ decreased or slowed down following the drying and rewatering alternations,especially in the third drought spell.

  6. Nuclear Receptor Small Heterodimer Partner in Apoptosis Signaling and Liver Cancer

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Yuxia; Wang, Li, E-mail: l.wang@hsc.utah.edu [Departments of Medicine and Oncological Sciences, Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT 84132 (United States)

    2011-01-05

    Small heterodimer partner (SHP, NR0B2) is a unique orphan nuclear receptor that contains the dimerization and a putative ligand-binding domain, but lacks the conserved DNA binding domain. SHP exerts its physiological function as an inhibitor of gene transcription through physical interaction with multiple nuclear receptors and transcriptional factors. SHP is a critical transcriptional regulator affecting diverse biological functions, including bile acid, cholesterol and lipid metabolism, glucose and energy homeostasis, and reproductive biology. Recently, we and others have demonstrated that SHP is an epigenetically regulated transcriptional repressor that suppresses the development of liver cancer. In this review, we summarize recent major findings regarding the role of SHP in cell proliferation, apoptosis, and DNA methylation, and discuss recent progress in understanding the function of SHP as a tumor suppressor in the development of liver cancer. Future study will be focused on identifying SHP associated novel prooncogenes and anti-oncogenes in liver cancer progression and applying the knowledge gained on SHP in liver cancer prevention, diagnosis and treatment.

  7. MutLα heterodimers modify the molecular phenotype of Friedreich ataxia.

    Directory of Open Access Journals (Sweden)

    Vahid Ezzatizadeh

    Full Text Available BACKGROUND: Friedreich ataxia (FRDA, the most common autosomal recessive ataxia disorder, is caused by a dynamic GAA repeat expansion mutation within intron 1 of FXN gene, resulting in down-regulation of frataxin expression. Studies of cell and mouse models have revealed a role for the mismatch repair (MMR MutS-heterodimer complexes and the PMS2 component of the MutLα complex in the dynamics of intergenerational and somatic GAA repeat expansions: MSH2, MSH3 and MSH6 promote GAA repeat expansions, while PMS2 inhibits GAA repeat expansions. METHODOLOGY/PRINCIPAL FINDINGS: To determine the potential role of the other component of the MutLα complex, MLH1, in GAA repeat instability in FRDA, we have analyzed intergenerational and somatic GAA repeat expansions from FXN transgenic mice that have been crossed with Mlh1 deficient mice. We find that loss of Mlh1 activity reduces both intergenerational and somatic GAA repeat expansions. However, we also find that loss of either Mlh1 or Pms2 reduces FXN transcription, suggesting different mechanisms of action for Mlh1 and Pms2 on GAA repeat expansion dynamics and regulation of FXN transcription. CONCLUSIONS/SIGNIFICANCE: Both MutLα components, PMS2 and MLH1, have now been shown to modify the molecular phenotype of FRDA. We propose that upregulation of MLH1 or PMS2 could be potential FRDA therapeutic approaches to increase FXN transcription.

  8. Yeast surface display of a noncovalent MHC class II heterodimer complexed with antigenic peptide.

    Science.gov (United States)

    Boder, Eric T; Bill, Jerome R; Nields, Andrew W; Marrack, Philippa C; Kappler, John W

    2005-11-20

    Microbial protein display technologies have enabled directed molecular evolution of binding and stability properties in numerous protein systems. In particular, dramatic improvements to antibody binding affinity and kinetics have been accomplished using these tools in recent years. Examples of successful application of display technologies to other immunological proteins have been limited to date. Herein, we describe the expression of human class II major histocompatibility complex allele (MHCII) HLA-DR4 on the surface of Saccharomyces cerevisiae as a noncovalently associated heterodimer. The yeast-displayed MHCII is fully native as assessed by binding of conformationally specific monoclonal antibodies; failure of antibodies specific for empty HLA-DR4 to bind yeast-displayed protein indicates antigenic peptide is bound. This report represents the first example of a noncovalent protein dimer displayed on yeast and of successful display of wild-type MHCII. Results further point to the potential for using yeast surface display for engineering and analyzing the antigen binding properties of MHCII.

  9. Dioxin and phthalate uptake and assimilation by the green mussel Perna viridis

    International Nuclear Information System (INIS)

    In this study, the aqueous uptake and dietary assimilation (trophic transfer) of two endocrine disrupting compounds (dioxin and phathalic acid) in the green mussel Perna viridis were quantified. During short-term exposure period, dioxin rapidly sorbed onto phytoplankton and its accumulation was much higher than that of phthalate. The uptake of these two compounds by the mussels increased with increasing temperature and salinity (for dioxin only). The dietary assimilation of the two contaminants was rather modest (10–64% for dioxin and 20–47% for phthalate), and was greatly dependent on the food species and concentration. Interestingly, dietary assimilation increased with increasing diatom food concentration. Gut passage time was partially responsible for the variable dietary assimilation. Given the high dissolved uptake rate and the modest dietary assimilation, aqueous exposure was predicted to be the dominant bioaccumulation source for both dioxin and phthalate in the green mussels under most conditions. -- Capsule: Aqueous uptake was the predominant pathway for dioxin and phthalate accumulation in marine green mussels

  10. Phytolith analysis for differentiating between foxtail millet (Setaria italica and green foxtail (Setaria viridis.

    Directory of Open Access Journals (Sweden)

    Jianping Zhang

    Full Text Available Foxtail millet (Setaria italica is one of the oldest domesticated cereal crops in Eurasia, but identifying foxtail millets, especially in charred grains, and differentiating it from its wild ancestor, green foxtail (Setaria viridis, in the archaeobotanical remains, is still problematic. Phytolithic analysis provides a meaningful method for identifying this important crop. In this paper, the silicon structure patterns in the glumes, lemmas, and paleas from inflorescence bracts in 16 modern plants of foxtail millet and green foxtail from China and Europe are examined using light microscopy with phase-contrast and a microscopic interferometer. Our research shows that the silicon structure of ΩIII from upper lemmas and paleas in foxtail millet and green foxtail can be correspondingly divided into two groups. The size of ΩIII type phytolith of foxtail millet is bigger than that from green foxtail. Discriminant function analysis reveals that 78.4% of data on foxtail millet and 76.9% of data on green foxtail are correctly classified. This means certain morphotypes of phytoliths are relatively reliable tools for distinguishing foxtail millet from green foxtail. Our results also revealed that the husk phytolith morphologies of foxtail millets from China and Eastern Europe are markedly different from those from Western Europe. Our research gives a meaningful method of separating foxtail millet and green foxtail. The implications of these findings for understanding the history of foxtail millet domestication and cultivation in ancient civilizations are significant.

  11. Sequencing and Analysis of a Genomic Fragment Provide an Insight into the Dunaliella viridis Genomic Sequence

    Institute of Scientific and Technical Information of China (English)

    Xiao-Ming SUN; Yuan-Ping TANG; Xiang-Zong MENG; Wen-Wen ZHANG; Shan LI; Zhi-Rui DENG; Zheng-Kai XU; Ren-Tao SONG

    2006-01-01

    Dunaliella is a genus of wall-less unicellular eukaryotic green alga. Its exceptional resistances to salt and various other stresses have made it an ideal model for stress tolerance study. However, very little is known about its genome and genomic sequences. In this study, we sequenced and analyzed a 29,268 bp genomic fragment from Dunaliella viridis. The fragment showed low sequence homology to the GenBank database. At the nucleotide level, only a segment with significant sequence homology to 18S rRNA was found. The fragment contained six putative genes, but only one gene showed significant homology at the protein level to GenBank database. The average GC content of this sequence was 51.1%, which was much lower than that of close related green algae Chlamydomonas (65.7%). Significant segmental duplications were found within this fragment. The duplicated sequences accounted for about 35.7% of the entire region. Large amounts of simple sequence repeats (microsatellites) were found, with strong bias towards (AC)n type (76%). Analysis of other Dunaliella genomic sequences in the GenBank database (total 25,749 bp) was in agreement with these findings. These sequence features made it difficult to sequence Dunaliella genomic sequences. Further investigation should be made to reveal the biological significance of these unique sequence features.

  12. Uptake,Deuration and Subcellular Distribution of Cadmium in Various Tissues of Perna Viridis

    Institute of Scientific and Technical Information of China (English)

    M.S.YANG; S.T.CHIU; 等

    1995-01-01

    Green-lipped mussels(Perna viridis)were collected from a local mariculture site and placed in pre-cleaned sea water tanks containing 0,0.2,0.5and 1.3μg/ml CdCl2.The level of Cd in the gill,viscera and gonad was measured.The concentration of Cd in the 3 tissues increased linearly over 4 days' of exposure.The rate of uptake depends on the concentration of Cd in the water.In the 3 tissues studied,the maximum rate of uptake(Vmax)was highest in the gill(500μg/g dry weiht/day),followed by viscera(100μg/g dry weight/ day)and gonad(56.8μg/g dry weight/day).The majority of the Cd taken up was bound to a fraction of the heat-stable proteins similar to metallothioneins.The rate of Cd depuration from the tissues was poor.There was no change in Cd concentration over 8 days' depuration in clean water.

  13. The osmotic behaviour of toad skin epithelium (Bufo viridis). an electron microprobe analysis.

    Science.gov (United States)

    Rick, R; Dörge, A; Katz, U; Bauer, R; Thurau, K

    1980-05-01

    The effect of saline adaptation on the intracellular Na, K, Cl, P concentrations and dry weight content of the toad skin epithelium (Bufo viridis) was studied using the technique of electron microprobe analysis. The measurements were performed on isolated abdominal skins either directly after dissection or after additional incubation in Ussing-type chambers. Adaptations of the toads to increasing NaCl concentrations for 7 days resulted in increased blood plasma osmolarity and a parallel increase in the cellular electrolyte, P and dry weight concentrations of the epithelium, the K increase representing the most significant fraction of the intracellular osmolarity increase. No evidence was obtained to show that the nucleus and cytoplasm reacted differently from each other and all living epithelial cell types basically showed the same response. Incubation of the isolated skins under control conditions showed a drastic inhibition of the transepithelial Na transport after adaptation to high salinities. In spite of the large variations in the transport rate almost identical intracellular electrolyte concentrations were observed. In tap water adapted toads the average cellular concentrations were 8.8 mmole/kg wet weight for Na, 109.6 for K, 41.5 for Cl, and 135.3 for P, respectively. Incubation of the skin with Ringer's solution of different osmolarities demonstrated that the epithelial cells are in osmotic equilibrium with the inner bathing solution. The results are consistent with the view that the osmotic adaptation is mainly accomplished by the movement of water. PMID:7191092

  14. SEASONAL VARIATION OF HEAVY METALS IN PERNA VIRIDIS FROM GUAYACAN, ARAYA PENINSULA, SUCRE STATE, VENEZUELA

    Directory of Open Access Journals (Sweden)

    Lemus, Mairin

    2011-01-01

    Full Text Available Environmental Biomonitoring is a tool to assess the presence of environmental pollutants, particularly heavy metals, due to their persistence and toxicity to the biotic component. The concentrations of the heavy metals Zn, Cu, Cd, Cr, Pb and Ni were determined in males and females of Perna viridis (μg·g-1dry weight, with the purpose of evaluating the environmental quality in Guayacán, state Sucre, Venezuela, during the months of November (2006, May and August (2007, and February (2008. November and August are both in the rainy season, with May and February part of the dry season. The metals in the samples were determined using AAS (Atomic Absortion Spectophotometric and the precision of the method was verified using the reference standard NIST Oyster Tissue 1566ª. The concentrations of Zn, Cu, Cd, Cr, Pb and Ni showed significant differences in the months studied except for Ni in males that did not exhibit variation. The highest values in Zn and Ni occurred in the rainy season, while Cu and Cr were highest during the month of February, and Cd and Pb during the month of May, both months in the dry season. The females presented levels of Cu, Cd and Ni significantly higher than the males. The metals Zn, Cu, Cd, Cr, Pb and Ni presented values below the limits pointed out by FAO (Food and Agricultura Organization of the United Nations, FDA (Food and Drugs Administration and BZL (Federal Brazilian Legislation.

  15. Life History of the Camelthorn Gall Leafhopper, Scenergates viridis (Vilbaste (Hemiptera, Cicadellidae

    Directory of Open Access Journals (Sweden)

    Roman Rakitov

    2012-01-01

    Full Text Available The world’s only member of Hemiptera Auchenorrhyncha known to form true galls, the leafhopper Scenergates viridis (Vilbaste (Cicadellidae, transforms leaves of camelthorn (Alhagi maurorum Medikus, Fabaceae into pod-like chambers, up to 35 mm long, inside which individual leafhoppers develop, mate, and lay eggs. At the study site 40 km SE of Bukhara (Uzbekistan, two generations develop annually. First-instar nymphs cause young leaves to fold along the midrib. The subsequent development takes place inside the tightly closed growing gall, plugged at both ends with a mixture of leafhopper excrement, brochosomes, and crushed exuviae. These plugs act as mechanical barriers and sticky traps for intruders. The inner surface of the gall, lined with brochosomes and wax platelets, is hydrophobic. Adult males emerge from their galls and squeeze into female galls. Fertilized females insert an average of 146 eggs under the gall’s inner epidermis and remain inside, possibly protecting the brood, until they die. The walls of the galls containing eggs are approximately three times thicker than regular leaves. The galls are subject to predation by Gelechiidae caterpillars; the eggs of the leafhopper are parasitized by two species of Trichogrammatidae and one Mymaridae (Hymenoptera, and its larvae by one species of Pipunculidae (Diptera.

  16. Detection of Cryptosporidium oocysts in green mussels (Perna viridis from shell-fish markets of Thailand

    Directory of Open Access Journals (Sweden)

    Srisuphanunt M.

    2009-09-01

    Full Text Available Mussels filter large volumes of water and can concentrate pathogenic organisms, which may act as potential vehicles of transmission to the consumer. A survey study was carried out to investigate the presence of Cryptosporidium protozoan parasites in green mussels (Perna viridis, the smussles pecies most destined for consumption in Thailand. In total, 56 samples were examined from Bangkok (n = 24 and Samut Prakan (n = 32 a wholesale shell-fish markets located at the mouth of the Chao Phraya River. The market for green mussels was closed to the mussel culture placed along the coastal line and this localization may have significant economical impact if the mussels’ cultures are found contaminated. Cryptosporidium spp. oocysts were detected by the immunofluorescence antibody method (IFA in 12.5% of the samples examined. The detection of Cryptosporidium oocysts in green mussels’ population of Samut Prakan was higher (15.6% than in Bangkok market (8.3%. These differences in positive samples from the two locations may be caused by physical, ecological and anthropogenic conditions. This could relay to different contamination levels of marine water by Cryptosporidium oocysts and consequently to contamination of harvested shellfish populations. The results demonstrate that the Cryptosporidium spp. oocysts were found indigenous in mussels from the coastal line of Thailand, indicating that mussels may act as a reservoir of Cryptosporidium foodborne infections for humans.

  17. Sequencing and analysis of a genomic fragment provide an insight into the Dunaliella viridis genomic sequence.

    Science.gov (United States)

    Sun, Xiao-Ming; Tang, Yuan-Ping; Meng, Xiang-Zong; Zhang, Wen-Wen; Li, Shan; Deng, Zhi-Rui; Xu, Zheng-Kai; Song, Ren-Tao

    2006-11-01

    Dunaliella is a genus of wall-less unicellular eukaryotic green alga. Its exceptional resistances to salt and various other stresses have made it an ideal model for stress tolerance study. However, very little is known about its genome and genomic sequences. In this study, we sequenced and analyzed a 29,268 bp genomic fragment from Dunaliella viridis. The fragment showed low sequence homology to the GenBank database. At the nucleotide level, only a segment with significant sequence homology to 18S rRNA was found. The fragment contained six putative genes, but only one gene showed significant homology at the protein level to GenBank database. The average GC content of this sequence was 51.1%, which was much lower than that of close related green algae Chlamydomonas (65.7%). Significant segmental duplications were found within this fragment. The duplicated sequences accounted for about 35.7% of the entire region. Large amounts of simple sequence repeats (microsatellites) were found, with strong bias towards (AC)(n) type (76%). Analysis of other Dunaliella genomic sequences in the GenBank database (total 25,749 bp) was in agreement with these findings. These sequence features made it difficult to sequence Dunaliella genomic sequences. Further investigation should be made to reveal the biological significance of these unique sequence features. PMID:17091199

  18. Effect of cadmium on cellular viability in two species of microalgae (Scenedesmus sp. and Dunaliella viridis).

    Science.gov (United States)

    Marcano, Letty Beatriz C; Carruyo, Ingrid M; Montiel, Xiomara M; Morales, Carolina B; de Soto, Patricia Moreno

    2009-07-01

    We determined the effect of several concentrations of cadmium (0, 5, 10, and 20 microg/l) on cellular viability in the microalgae Scenedesmus sp. and Dunaliella viridis, by measuring growth at 0, 24, 48, 72, and 96 h and pigment production at 10 days. Algae were obtained from the Nonvascular Plant Laboratory collection, in the Facultad Experimental de Ciencias, Universidad del Zulia, Venezuela. Growth was measured by cellular counting, while pigment content was evaluated using conventional spectrophotometric techniques. Growth of both species decreased in the exposed cultures comparing with the control, but its behavior was similar, because in both control and exposed cultures, its was observed an adaptive phase in the first hours, as well as a growth phase after 72 h. Cadmium concentrations above 10 microg/l produced an adverse effect on pigment production, depending on the concentration and/or exhibition time. However, even though cadmium inhibited growth and pigment production, levels of both parameters indicated cellular viability, demonstrating the adaptability of the algae cultures when they were exposed to the metal. PMID:19172231

  19. Orphan nuclear receptor small heterodimer partner inhibits angiotensin II-stimulated PAI-1 expression in vascular smooth muscle cells

    OpenAIRE

    Lee, Kyeong-Min; Seo, Hye-Young; Kim, Mi-Kyung; Min, Ae-Kyung; Ryu, Seong-Yeol; Kim, Yoon-Nyun; Park, Young Joo; Choi, Hueng-Sik; Lee, Ki-Up; Park, Wan-Ju; Park, Keun-Gyu; Lee, In-Kyu

    2009-01-01

    Angiotensin II is a major effector molecule in the development of cardiovascular disease. In vascular smooth muscle cells (VSMCs), angiotensin II promotes cellular proliferation and extracellular matrix accumulation through the upregulation of plasminogen activator inhibitor-1 (PAI-1) expression. Previously, we demonstrated that small heterodimer partner (SHP) represses PAI-1 expression in the liver through the inhibition of TGF-β signaling pathways. Here, we investigated whether SHP inhibite...

  20. Inter-population thermal variability and physiological response in the intertidal fish Scartichthys viridis (Blenniidae Variabilidad térmica intrapoblacional y respuesta fisiológica en el pez intermareal Scartichthys viridis (Blenniidae

    Directory of Open Access Journals (Sweden)

    JOSÉ M PULGAR

    2007-12-01

    Full Text Available Determining habitat conditions that generate individual physiological variability represents key basic knowledge to understand the direction of animal's responses to habitat change. The coastal fish Scartichthys viridis inhabits low intertidal pools along the Chilean coast. Because seawater in the low intertidal is renewed during every tidal cycle, this zone is characterized by a low thermal variation and abundant food within and between localities. We evaluated whether seawater thermal conditions and food availability of low intertidal pools registered in three localities of Chilean coast are sufficient to generate physiological and energetic differences in individuals of S. viridis captured from three geographic separate populations spanning approximately 1,200 km. Southern fishes acclimatized to 25 °C showed higher metabolic rates than those from other localities and thermal treatments. On the other hand, southern fishes in natural conditions showed higher condition factor than northern fishes. This evidence is sufficient to indicate that slight latitudinal differences in tidepool seawater temperature associated to differential food availability induced an energetic constraint in this species. Moreover, southern population of S. viridis may suffer important effects on energetic allocation if seawater temperature increases slightly, with repercussions on its geographic distribution in southern Pacific OceanDeterminar las condiciones del ambiente que generan variabilidad fisiológica, representa un conocimiento básico para comprender el sentido de la respuesta de los animales a los cambios en su habitat. El pez costero Scartichthys viridis habita las pozas bajas del intermareal a lo largo de la costa chilena. Debido a que el agua de mar se renueva en cada ciclo de marea en las pozas bajas, esta zona está caracterizada por una baja variación térmica y abundante alimento entre localidades. Nosotros evaluamos si las condiciones térmicas y la

  1. The polar 2e/12c bond in phenalenyl-azaphenalenyl hetero-dimers: Stronger stacking interaction and fascinating interlayer charge transfer

    Science.gov (United States)

    Zhong, Rong-Lin; Xu, Hong-Liang; Li, Zhi-Ru

    2016-08-01

    An increasing number of chemists have focused on the two-electron/multicenter bond (2e/mc) that was first introduced to interpret the bonding mechanism of radical dimers. Herein, we report the polar two-electron/twelve center (2e/12c) bonding character in a series of phenalenyl-azaphenalenyl radical hetero-dimers. Interestingly, the bonding energy of weaker polar hetero-dimer (P-TAP) is dominated by the overlap of the two different singly occupied molecular orbital of radicals, while that of stronger polar hetero-dimer (P-HAP) is dominated by the electrostatic attraction. Results show that the difference between the electronegativity of the monomers plays a prominent role in the essential attribution of the polar 2e/12c bond. Correspondingly, a stronger stacking interaction in the hetero-dimer could be effectively achieved by increasing the difference of nitrogen atoms number between the monomers. It is worthy of note that an interesting interlayer charge transfer character is induced in the polar hetero-dimers, which is dependent on the difference between the electronegativity of the monomers. It is our expectation that the new knowledge about the bonding nature of radical hetero-dimers might provide important information for designing radical based functional materials with various applications.

  2. Molecular insight of isotypes specific β-tubulin interaction of tubulin heterodimer with noscapinoids.

    Science.gov (United States)

    Santoshi, Seneha; Naik, Pradeep K

    2014-07-01

    Noscapine and its derivatives bind stoichiometrically to tubulin, alter its dynamic instability and thus effectively inhibit the cellular proliferation of a wide variety of cancer cells including many drug-resistant variants. The tubulin molecule is composed of α- and β-tubulin, which exist as various isotypes whose distribution and drug-binding properties are significantly different. Although the noscapinoids bind to a site overlapping with colchicine, their interaction is more biased towards β-tubulin. In fact, their precise interaction and binding affinity with specific isotypes of β-tubulin in the αβ-heterodimer has never been addressed. In this study, the binding affinity of a panel of noscapinoids with each type of tubulin was investigated computationally. We found that the binding score of a specific noscapinoid with each type of tubulin isotype is different. Specifically, amino-noscapine has the highest binding score of -6.4, -7.2, -7.4 and -7.3 kcal/mol with αβI, αβII, αβIII and αβIV isotypes, respectively. Similarly 10 showed higher binding affinity of -6.8 kcal/mol with αβV, whereas 8 had the highest binding affinity of -7.2, -7.1 and -7.2 kcal/mol, respectively with αβVI, αβVII and αβVIII isotypes. More importantly, both amino-noscapine and its clinical derivative, bromo-noscapine have the highest binding affinity of -46.2 and -38.1 kcal/mol against αβIII (overexpression of αβIII has been associated with resistance to a wide range of chemotherapeutic drugs for several human malignancies) as measured using MM-PBSA. Knowledge of the isotype specificity of the noscapinoids may allow for development of novel therapeutic agents based on this class of drugs. PMID:24916062

  3. Small heterodimer partner overexpression partially protects against liver tumor development in farnesoid X receptor knockout mice

    Energy Technology Data Exchange (ETDEWEB)

    Li, Guodong [Department of Surgical Oncology, Cancer Treatment Center, The Fourth Affiliated Hospital of Harbin Medical University, Harbin (China); Kong, Bo [Department of Pharmacology and Toxicology, School of Pharmacy, Rutgers University, Piscataway, NJ (United States); Zhu, Yan [Department of General Surgery, Xuanwu Hospital, Capital Medical University, Beijing (China); Zhan, Le [Department of Pharmacology and Toxicology, School of Pharmacy, Rutgers University, Piscataway, NJ (United States); Department of Pharmacology, Toxicology and Therapeutics, University of Kansas Medical Center, Kansas City, KS (United States); Williams, Jessica A. [Department of Pharmacology, Toxicology and Therapeutics, University of Kansas Medical Center, Kansas City, KS (United States); Tawfik, Ossama [Department of Pathology and Laboratory Medicine, University of Kansas Medical Center, Kansas City, KS (United States); Kassel, Karen M. [Department of Pharmacology, Toxicology and Therapeutics, University of Kansas Medical Center, Kansas City, KS (United States); Luyendyk, James P. [Pathobiology and Diagnostic Investigation, Michigan State University, East Lansing, MI (United States); Wang, Li [Department of Medicine, Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT (United States); Guo, Grace L., E-mail: guo@eohsi.rutgers.edu [Department of Pharmacology and Toxicology, School of Pharmacy, Rutgers University, Piscataway, NJ (United States)

    2013-10-15

    Farnesoid X receptor (FXR, Nr1h4) and small heterodimer partner (SHP, Nr0b2) are nuclear receptors that are critical to liver homeostasis. Induction of SHP serves as a major mechanism of FXR in suppressing gene expression. Both FXR{sup −/−} and SHP{sup −/−} mice develop spontaneous hepatocellular carcinoma (HCC). SHP is one of the most strongly induced genes by FXR in the liver and is a tumor suppressor, therefore, we hypothesized that deficiency of SHP contributes to HCC development in the livers of FXR{sup −/−} mice and therefore, increased SHP expression in FXR{sup −/−} mice reduces liver tumorigenesis. To test this hypothesis, we generated FXR{sup −/−} mice with overexpression of SHP in hepatocytes (FXR{sup −/−}/SHP{sup Tg}) and determined the contribution of SHP in HCC development in FXR{sup −/−} mice. Hepatocyte-specific SHP overexpression did not affect liver tumor incidence or size in FXR{sup −/−} mice. However, SHP overexpression led to a lower grade of dysplasia, reduced indicator cell proliferation and increased apoptosis. All tumor-bearing mice had increased serum bile acid levels and IL-6 levels, which was associated with activation of hepatic STAT3. In conclusion, SHP partially protects FXR{sup −/−} mice from HCC formation by reducing tumor malignancy. However, disrupted bile acid homeostasis by FXR deficiency leads to inflammation and injury, which ultimately results in uncontrolled cell proliferation and tumorigenesis in the liver. - Highlights: • SHP does not prevent HCC incidence nor size in FXR KO mice but reduces malignancy. • Increased SHP promotes apoptosis. • Bile acids and inflammation maybe critical for HCC formation with FXR deficiency.

  4. Characterization of small HSPs from Anemonia viridis reveals insights into molecular evolution of alpha crystallin genes among cnidarians.

    Directory of Open Access Journals (Sweden)

    Aldo Nicosia

    Full Text Available Gene family encoding small Heat-Shock Proteins (sHSPs containing α-crystallin domain are found both in prokaryotic and eukaryotic organisms; however, there is limited knowledge of their evolution. In this study, two small HSP genes termed AvHSP28.6 and AvHSP27, both organized in one intron and two exons, were characterised in the Mediterranean snakelocks anemone Anemonia viridis. The release of the genome sequence of Hydra magnipapillata and Nematostella vectensis enabled a comprehensive study of the molecular evolution of α-crystallin gene family among cnidarians. Most of the H. magnipapillata sHSP genes share the same gene organization described for AvHSP28.6 and AvHSP27, differing from the sHSP genes of N. vectensis which mainly show an intronless architecture. The different genomic organization of sHSPs, the phylogenetic analyses based on protein sequences, and the relationships among Cnidarians, suggest that the A.viridis sHSPs represent the common ancestor from which H. magnipapillata genes directly evolved through segmental genome duplication. Additionally retroposition events may be considered responsible for the divergence of sHSP genes of N. vectensis from A. viridis. Analyses of transcriptional expression profile showed that AvHSP28.6 was constitutively expressed among different tissues from both ectodermal and endodermal layers of the adult sea anemones, under normal physiological conditions and also under different stress condition. Specifically, we profiled the transcriptional activation of AvHSP28.6 after challenges with different abiotic/biotic stresses showing induction by extreme temperatures, heavy metals exposure and immune stimulation. Conversely, no AvHSP27 transcript was detected in such dissected tissues, in adult whole body cDNA library or under stress conditions. Hence, the involvement of AvHSP28.6 gene in the sea anemone defensome is strongly suggested.

  5. A study on controlling Setaria viridis and Corchorus olitorius associated with Phaseolus vulgaris growth using natural extracts of Chenopodium album

    Directory of Open Access Journals (Sweden)

    El-Rokiek Kowthar Gad

    2016-04-01

    Full Text Available The effects of water extracts of Chenopodium album leaves and roots on the growth of grass weed (Setaria viridis and broad leaf weed (Corchorus olitorius grown with beans (Phaseolus vulgaris in greenhouse pots were studied in the National Research Centre, Giza, Egypt. In this experiment fresh leaf and root extracts and their corresponding dry leaf and root extracts at different concentrations were used. There were significant inhibitions in the dry weights of S. viridis and C. olitorius by all extracts at the flowering stage of beans and at harvest. The inhibition effect of all C. album extracts on both weeds (dry weight/pot depended on the extracted plant organ (leaf or root, its fresh or dry form as well as its concentrations. The inhibition caused by the leaf extract was much higher on weed growth than that of root extract. A higher concentration of fresh leaf extract (25% had the highest significant inhibition effect. The results also indicated that C. olitorius was more sensitive to the extracts than S. viridis. On the other hand, the inhibition effect of the extracts on the growth of both weeds was accompanied by increased bean growth and yield/plant. The analysis of both leaf and root extracts of C. album revealed that the total content of polyphenols and flavonoids in the leaf extract was more than triple that of the root extract. The results suggested that the fresh leaf extract of C. album may be a possible tool for the development of weed control using natural herbicides.

  6. The cloning and characterization of two ammonium transporters in the salt-resistant green alga, Dunaliella viridis.

    Science.gov (United States)

    Song, Ting; Gao, Qiang; Xu, Zhengkai; Song, Rentao

    2011-10-01

    Ammonium (NH(4) (+)) transport is a key process in nitrogen metabolism. To elucidate the role of ammonium transporters in the nitrogen consumption of the salt-resistant green alga, Dunaliella viridis, two ammonium transporter genes, DvAMT1;1 and DvAMT1;2, were isolated from cDNA libraries of D. viridis. DvAMT1;1 and DvAMT1;2 share only 40% amino acid identity, indicating that they have highly divergent coding sequences. Functional complementation in a yeast mutant defective in ammonium uptake indicated that both DvAMT1;1 and DvAMT1;2 were functional ammonium transporters. Quantitative RT-PCR showed similar expression patterns, but different transcript abundance levels, for DvAMT1;1 and DvAMT1;2 under different nitrogen conditions. Both were induced at low nitrogen and inhibited at high nitrogen concentrations, especially when NH(4) (+) was the nitrogen source. At the transcriptional level, DvAMT1;1 was diurnally regulated, while DvAMT1;2 was not. In addition, under NaCl concentrations that ranged from 0.5 to 3 M, DvAMT1;1 was down-regulated at the higher salt conditions; conversely, DvAMT1;2 maintained a relatively low, but stable, transcript abundance. The observed differences in transcriptional regulation of DvAMT1;1 and DvAMT1;2 are indicative of their diverse physiological functions in D. viridis. PMID:21153924

  7. Calculated coupling of electron and proton transfer in the photosynthetic reaction center of Rhodopseudomonas viridis.

    Science.gov (United States)

    Lancaster, C R; Michel, H; Honig, B; Gunner, M R

    1996-06-01

    Based on new Rhodopseudomonas (Rp.) viridis reaction center (RC) coordinates with a reliable structure of the secondary acceptor quinone (QB) site, a continuum dielectric model and finite difference technique have been used to identify clusters of electrostatically interacting ionizable residues. Twenty-three residues within a distance of 25 A from QB (QB cluster) have been shown to be strongly electrostatically coupled to QB, either directly or indirectly. An analogous cluster of 24 residues is found to interact with QA (QA cluster). Both clusters extend to the cytoplasmic surface in at least two directions. However, the QB cluster differs from the QA cluster in that it has a surplus of acidic residues, more strong electrostatic interactions, is less solvated, and experiences a strong positive electrostatic field arising from the polypeptide backbone. Consequently, upon reduction of QA or QB, it is the QB cluster, and not the QA cluster, which is responsible for substoichiometric proton uptake at neutral pH. The bulk of the changes in the QB cluster are calculated to be due to the protonation of a tightly coupled cluster of the three Glu residues (L212, H177, and M234) within the QB cluster. If the lifetime of the doubly reduced state QB2- is long enough, Asp M43 and Ser L223 are predicted to also become protonated. The calculated complex titration behavior of the strongly interacting residues of the QB cluster and the resulting electrostatic response to electron transfer may be a common feature in proton-transferring membrane protein complexes. PMID:8744288

  8. Behavioural and neurotoxic effects of ayahuasca infusion (Banisteriopsis caapi and Psychotria viridis) in female Wistar rat.

    Science.gov (United States)

    Pic-Taylor, Aline; da Motta, Luciana Gueiros; de Morais, Juliana Alves; Junior, Willian Melo; Santos, Alana de Fátima Andrade; Campos, Leandro Ambrósio; Mortari, Marcia Renata; von Zuben, Marcus Vinicius; Caldas, Eloisa Dutra

    2015-09-01

    Ayahuasca, a psychoactive beverage used by indigenous and religious groups, is generally prepared by the coction of Psychotria viridis and Banisteriopsis caapi plants containing N,N-dimethyltryptamine (DMT) and β-carboline alkaloids, respectively. To investigate the acute toxicity of ayahuasca, the infusion was administered by gavage to female Wistar rats at doses of 30X and 50X the dose taken during a religious ritual, and the animals observed for 14 days. Behavioural functions were investigated one hour after dosing at 15X and 30X using the open field, elevated plus maze, and forced swimming tests. Neuronal activation (c-fos marked neurons) and toxicity (Fluoro-Jade B and Nissl/Cresyl staining) were investigated in the dorsal raphe nuclei (DRN), amygdaloid nucleus, and hippocampal formation brain areas of rats treated with a 30X ayahuasca dose. The actual lethal oral dose in female Wistar rats could not be determined in this study, but was shown to be higher than the 50X (which corresponds to 15.1mg/kg bw DMT). The ayahuasca and fluoxetine treated groups showed a significant decrease in locomotion in the open field and elevated plus-maze tests compared to controls. In the forced swimming test, ayahuasca treated animals swam more than controls, a behaviour that was not significant in the fluoxetine group. Treated animals showed higher neuronal activation in all brain areas involved in serotoninergic neurotransmission. Although this led to some brain injury, no permanent damage was detected. These results suggest that ayahuasca has antidepressant properties in Wistar female at high doses, an effect that should be further investigated. PMID:26049017

  9. Cloning and characterization of two novel chloroplastic glycerol-3-phosphate dehydrogenases from Dunaliella viridis.

    Science.gov (United States)

    He, Yunxia; Meng, Xiangzong; Fan, Qianlan; Sun, Xiaoliang; Xu, Zhengkai; Song, Rentao

    2009-09-01

    Dunaliella, a unicellular green alga, has the unusual ability to survive dramatic osmotic stress by accumulating high concentrations of intracellular glycerol as a compatible solute. The chloroplastic glycerol-3-phosphate dehydrogenase (GPDH) has been considered to be the key enzyme that produces glycerol for osmoregulation in Dunaliella. In this study, we cloned the two most prominent GPDH cDNAs (DvGPDH1 and DvGPDH2) from Dunaliella viridis, which encode two polypeptides of 695 and 701 amino acids, respectively. Unlike higher plant GPDHs, both proteins contained extra phosphoserine phosphatase (SerB) domains at their N-termini in addition to C-terminal GPDH domains. Such bi-domain GPDHs represent a novel type of GPDH and are found exclusively in the chlorophyte lineage. Transient expression of EGFP fusion proteins in tobacco leaf cells demonstrated that both DvGPDH1 and DvGPDH2 are localized in the chloroplast. Overexpression of DvGPDH1 or DvGPDH2 could complement a yeast GPDH mutant (gpd1Delta), but not a yeast SerB mutant (ser2Delta). In vitro assays with purified DvGPDH1 and DvGPDH2 also showed apparent GPDH activity for both, but no SerB activity was detected. Surprisingly, unlike chloroplastic GPDHs from plants, DvGPDH1 and DvGPDH2 could utilize both NADH and NADPH as coenzymes and exhibited significantly higher GPDH activities when NADH was used as the coenzyme. Q-PCR analysis revealed that both genes exhibited transient transcriptional induction of gene expression upon hypersalinity shock, followed by a negative feedback of gene expression. These results shed light on the regulation of glycerol synthesis during salt stress in Dunaliella. PMID:19551475

  10. Heterodimers formed through a partial anionic exchange process: scanning tunneling spectroscopy to monitor bands across the junction vis-à-vis photoinduced charge separation

    Science.gov (United States)

    Bera, Abhijit; Saha, Sudip K.; Pal, Amlan J.

    2015-10-01

    We report controlled formation of heterodimers and their charge separation properties. CdS|CdTe heterodimers were formed through an anionic exchange process of CdS nanostructures. With control over the duration of the anionic exchange process, bulk|dot, bulk|bulk, and then dot|bulk phases of the semiconductors could be observed to have formed. A mapping of density of states as derived from scanning tunneling spectroscopy (STS) brought out conduction and valence band-edges along the nanostructures and heterodimers. The CdS|CdTe heterodimers evidenced a type-II band-alignment between the semiconductors along with the formation of a depletion region at the interface. The width (of the depletion region) and the energy-offset at the interface depended on the size of the semiconductors. We report that the width that is instrumental for photoinduced charge separation in the heterodimers has a direct correlation with the performance of hybrid bulk-heterojunction solar cells based on the nanostructures in a polymer matrix.We report controlled formation of heterodimers and their charge separation properties. CdS|CdTe heterodimers were formed through an anionic exchange process of CdS nanostructures. With control over the duration of the anionic exchange process, bulk|dot, bulk|bulk, and then dot|bulk phases of the semiconductors could be observed to have formed. A mapping of density of states as derived from scanning tunneling spectroscopy (STS) brought out conduction and valence band-edges along the nanostructures and heterodimers. The CdS|CdTe heterodimers evidenced a type-II band-alignment between the semiconductors along with the formation of a depletion region at the interface. The width (of the depletion region) and the energy-offset at the interface depended on the size of the semiconductors. We report that the width that is instrumental for photoinduced charge separation in the heterodimers has a direct correlation with the performance of hybrid bulk

  11. Atomic Simulation of Complex DNA DSBs and the Interactions with the Ku70/80 Heterodimer

    Science.gov (United States)

    Hu, Shaowen; Cucinotta, Francis A.

    2011-01-01

    DNA double strand breaks (DSBs) induced by ionizing radiation (IR) usually contain modified bases such as 8-oxo-7,8-dihydroguanine (8-oxoG) and thymine glycol, apurinic/apyrimidinic (AP) sites, 2-deoxyribonolactone, or single-strand breaks (SSBs). The presence of such lesions in close proximity to the DSB terminus makes the DNA nicks more difficult to repair and rejoin than endogenously induced simple DSBs, and as such a major determinant of the biological effects of high linear energy transfer (LET) radiation as encountered in space travel. In this study we conducted molecular dynamics simulations on a series of DNA duplexes with various complex lesions of 8-oxoG and AP sites, in an effort to investigate the effects of such lesions to the structural integrity and stability of DNA after insulted by IR. We also simulated the interaction of such complex DSBs with the Ku70/80 heterodimer, the first protein in mammalian cells to embark the non-homologous end joining (NHEJ) DNA repair pathway. The results indicate, compared to DNA with simple DSBs, the complex lesions can enhance the hydrogen bonds opening rate at the DNA terminus, and increase the mobility of the whole duplex, thus they present more deleterious effects to the genome integrity if not captured and repaired promptly in cells. Simulations also demonstrate the binding of Ku drastically reduces structural disruption and flexibility caused by the complex lesions, and the interactions of Ku with complex DSBs have a different potential energy landscape from the bound structure with simple DSB. In all complex DSBs systems, the binding of DSB terminus with Ku70 is softened while the binding of the middle duplex with Ku80 is tightened. This energy shift may help the Ku protein to secure at the DSB terminus for a longer time, so that other end processing factors or repair pathways can proceed at the lesions before NHEJ repair process starts. These atomic simulations may provide valuable new insight into the

  12. Influence of rearing water temperature on inducedgonadal development and spawning behaviour of tropical green mussel,Perna viridis

    Institute of Scientific and Technical Information of China (English)

    Parathattil Rathan Sreedevi; Venkatachalam Uthayakumar; Rajarajeswaran Jayakumar; Venkatachalam Ramasubramanian

    2014-01-01

    Objective:To standardize the technique of induced breeding and spawning of green mussel Perna viridis(P. viridis), in captivity.Methods:InExperiment-A, the temperature was increased at a rate of2℃/5 days interval.InExperiment-B, a rise of3℃/5 days was practiced, whereas inExperimentC andD, respectively4 and5℃ was increased in5 days interval. The temperature was maintained constant at20℃ in theControl.Results:The increase in temperature showed a progressive effect on the gonadal development of mussels.The gonads ripped at30 to32℃ in all the experimental tanks, irrespective of the difference in temperature hike.Complete spawning inP. viridiswas achieved by gradually raising the temperature from 20 to35℃ at a rate of3 or4℃/5 days.Conclusion:According to the present study temperature induced spawning method is very simple and cost effective and can accelerate the production of mussel seeds in hatchery units and further stock improvement through genetic manipulation.

  13. Structural basis for a Munc13-1 homodimer to Munc13-1/RIM heterodimer switch.

    Directory of Open Access Journals (Sweden)

    Jun Lu

    2006-07-01

    Full Text Available C(2 domains are well characterized as Ca(2+/phospholipid-binding modules, but little is known about how they mediate protein-protein interactions. In neurons, a Munc13-1 C(2A-domain/RIM zinc-finger domain (ZF heterodimer couples synaptic vesicle priming to presynaptic plasticity. We now show that the Munc13-1 C(2A domain homodimerizes, and that homodimerization competes with Munc13-1/RIM heterodimerization. X-ray diffraction studies guided by nuclear magnetic resonance (NMR experiments reveal the crystal structures of the Munc13-1 C(2A-domain homodimer and the Munc13-1 C(2A-domain/RIM ZF heterodimer at 1.44 A and 1.78 A resolution, respectively. The C(2A domain adopts a beta-sandwich structure with a four-stranded concave side that mediates homodimerization, leading to the formation of an eight-stranded beta-barrel. In contrast, heterodimerization involves the bottom tip of the C(2A-domain beta-sandwich and a C-terminal alpha-helical extension, which wrap around the RIM ZF domain. Our results describe the structural basis for a Munc13-1 homodimer-Munc13-1/RIM heterodimer switch that may be crucial for vesicle priming and presynaptic plasticity, uncovering at the same time an unexpected versatility of C(2 domains as protein-protein interaction modules, and illustrating the power of combining NMR spectroscopy and X-ray crystallography to study protein complexes.

  14. Potent activation of dopamine D3/D2 heterodimers by the antiparkinsonian agents, S32504, pramipexole and ropinirole.

    Science.gov (United States)

    Maggio, Roberto; Scarselli, Marco; Novi, Francesca; Millan, Mark J; Corsini, Giovanni U

    2003-11-01

    Recombinant, human dopamine D3 and D2 receptors form functional heterodimers upon co-expression in COS-7 cells. Herein, actions of the antiparkinsonian agents, S32504, ropinirole and pramipexole, at D3/D2L heterodimers were compared to their effects at the respective monomers and at split, chimeric D3trunk/D2tail and D2trunk/D3tail receptors: the trunk incorporated transmembrane domains (TDs) I-V and the tail TDs VI and VII. In binding assays with the antagonist [3H]nemonapride, all agonists were potent ligands of D3 receptors showing, respectively, 100-, 18- and 56-fold lower affinity at D2L receptors, mimicking the selective D3 receptor antagonist, S33084 (100-fold). At D3trunk/D2tail receptors, except for ropinirole, all drugs showed lower affinities than at D3 sites, whereas for D2trunk/D3tail receptors, affinities of all drugs were higher than at D2L sites. The proportion of high affinity binding sites recognized by S32504, pramipexole and ropinirole in membranes derived from cells co-expressing D3 and D2L sites was higher than in an equivalent mixture of membranes from cells expressing D3 or D2L sites, consistent with the promotion of heterodimer formation. In contrast, the percentage of high and low affinity sites (biphasic isotherms) recognized by S33084 was identical. Functional actions were determined by co-transfection of a chimeric adenylyl cyclase (AC)-V/VI insensitive to D3 receptors. Accordingly, D3 receptor-transfected cells were irresponsive whereas, in D2L receptor-transfected cells, agonists suppressed forskolin-stimulated cAMP production with modest potencies. In cells co-transfected with D3 and D2L receptors, S32504, ropinirole and pramipexole potently suppressed AC-V/VI with EC50s 33-, 19- and 11-fold lower than at D2L receptors, respectively. S32504 also suppressed AC-V/VI activity at split D3trunk/D2tail and D2trunk/D3tail chimeras transfected into COS-7 cells. In conclusion, antiparkinson agents behave as potent agonists at D3/D2

  15. Self-assembly of Hydrazide-based Heterodimers Driven by Hydrogen Bonding and Donor-Acceptor Interaction

    Institute of Scientific and Technical Information of China (English)

    FENG,Dai-Jun; WANG,Peng; LI,Xiao-Qiang; LI,Zhan-Ting

    2006-01-01

    A new series of hydrogen bonding-driven heterodimers have been self-assembled in chloroform from hydrazide-based monomers. Additional intermolecular donor-acceptor interaction between the electron-rich bis(p-phenylene)-34-crown-10 unit and the electron-deficient naphthalene diimide unit has been utilized to increase the stability of the dimmers, and pronounced cooperativity of the two discrete non-covalent forces to stabilize the dimer has been revealed by the quantitative 1H (2D) NMR and UV-Vis experiments.

  16. Mapping of a Microbial Protein Domain Involved in Binding and Activation of the TLR2/TLR1 Heterodimer 1

    OpenAIRE

    Liang, Shuang; Hosur, Kavita B.; Lu, Shanyun; Nawar, Hesham F.; Weber, Benjamin R.; Tapping, Richard I.; Terry D Connell; Hajishengallis, George

    2009-01-01

    LT-IIb-B5, a doughnut-shaped oligomeric protein from enterotoxigenic Escherichia coli, is known to activate the TLR2/TLR1 heterodimer (TLR2/1). We investigated the molecular basis of the LT-IIb-B5 interaction with TLR2/1 in order to define the structure-function relationship of LT-IIb-B5 and, moreover, to gain an insight into how TLR2/1 recognizes large, non-acylated protein ligands that cannot fit within its lipid-binding pockets, as previously shown for the Pam3CSK4 lipopeptide. We first id...

  17. Terpenoids, flavonoids and caffeic acid derivatives from Salvia viridis L. cvar. Blue Jeans.

    Science.gov (United States)

    Rungsimakan, Supattra; Rowan, Michael G

    2014-12-01

    Three diterpenoids, 1-oxomicrostegiol (1), viroxocin (2), viridoquinone (3), were isolated from the roots of Salvia viridis L. cvar. Blue Jeans. Five known diterpenoids, microstegiol (4), 7α-acetoxy-14-hydroxy-8,13-abietadiene-11,12-dione (5; 7-O-acetylhorminone tautomer), 7α,14-dihydroxy-8,13-abietadiene-11,12-dione (6; horminone tautomer), ferruginol and salvinolonyl 12-methyl ether (7) were also found in the roots together with 1-docosyl ferulate (8), and a mixture of 2-(4'-alkoxyphenyl) ethyl alkanoates (9). Two lupane triterpenoids, 2α-acetoxy-lup-20(29)-en-3β-ol (10), and 3β-acetoxy-lup-20(29)-en-2α-ol (11) were found in the aerial parts together with known compounds, lup-20(29)-ene-2α,3β-diol (12), ursolic acid, oleanolic acid, β-sitosterol and β-sitosterol glucoside. A known phenylpropanoid, trans-verbascoside (or acteoside; 13), was the main constituent in the polar fraction of the aerial part, and it is now reported in the genus Salvia for the first time. Other polyphenolic compounds were cis-verbascoside (14), leucosceptoside A (15), martynoside (16), caffeic acid, 6-O-caffeoyl-glucose (18), rosmarinic acid, salidroside, luteolin-7-O-α-rhamnopyranosyl-(1→6)-β-galactopyranoside, luteolin-7-O-β-galactopyranoside, luteolin-7-O-α-rhamnopyranosyl-(1→6)-β-glucopyranoside, luteolin-7-O-β-glucopyranoside, and apigenin-7-O-β-glucopyranoside. The structures were determined by 1D-, 2D-NMR and HR-ESI-MS techniques. Compounds 6, 10, ferruginol, ursolic acid and oleanolic acid exhibited antibacterial activity against Enterococcus faecalis (ATCC 775) with MIC 50 μM, 25 μM, 50 μM, 12.5 μM, 12.5 μM respectively. Ferruginol, ursolic acid and oleanolic acid were also active against Staphylococcus aureus (ATCC 6571), and Bacillus cereus (ATCC 2599) with MIC 12.5-50 μM. 4 was also active against S.aureus (ATCC 6571) with MIC 50 μM. These values are consistent with previous studies on the antimicrobial activity of Salvia diterpenoids.

  18. Visualizing a protein quake with time-resolved X-ray scattering at a free-electron laser

    DEFF Research Database (Denmark)

    Arnlund, David; Johansson, Linda C.; Wickstrand, Cecilia;

    2014-01-01

    We describe a method to measure ultrafast protein structural changes using time-resolved wide-angle X-ray scattering at an X-ray free-electron laser. We demonstrated this approach using multiphoton excitation of the Blastochloris viridis photosynthetic reaction center, observing an ultrafast global...

  19. Assessing the herbivore role of the sea-urchin Echinometra viridis: Keys to determine the structure of communities in disturbed coral reefs.

    Science.gov (United States)

    Sangil, Carlos; Guzman, Hector M

    2016-09-01

    Echinometra viridis previously was considered a cryptic species unable to control the development and growth of macroalgae on coral reefs. Its role as a herbivore was seen as minor compared to other grazers present on the reef. However, the present disturbed state of some reefs has highlighted the role played by this sea-urchin. Combining field data with experiments on the Caribbean coast of Panama, we demonstrate that the current community organization on disturbed coral reefs in the Mesoamerican Caribbean is largely due to the action of E. viridis. It is the most abundant sea-urchin species, together with two others (Diadema antillarum and Echinometra lucunter). Field data also indicate that the relationship between its density and the abundance of macroalgae is stronger and it is more negative in impact than those of the other two. However, the niche this urchin exploits most efficiently is confined to leeward reefs with low levels of sedimentation. Outside these habitats, their populations are not decisive in controlling macroalgal growth. Grazing experiments showed that E. viridis consumes more fresh macroalgae per day and per weight of sea-urchin, and is a more effective grazer than D. antillarum or E. lucunter. E. viridis showed food preferences for early-successional turf macroalgae (Acanthophora spicifera), avoiding the less palatable late-successional and fleshy macroalgae (Lobophora variegata, Halimeda opuntia). However, it becomes a generalist herbivore feeding on all varieties of macroalgae when resources are scarce. H. opuntia is the macroalga that most resists E. viridis activity, which may explain its wide distribution.

  20. Assessing the herbivore role of the sea-urchin Echinometra viridis: Keys to determine the structure of communities in disturbed coral reefs.

    Science.gov (United States)

    Sangil, Carlos; Guzman, Hector M

    2016-09-01

    Echinometra viridis previously was considered a cryptic species unable to control the development and growth of macroalgae on coral reefs. Its role as a herbivore was seen as minor compared to other grazers present on the reef. However, the present disturbed state of some reefs has highlighted the role played by this sea-urchin. Combining field data with experiments on the Caribbean coast of Panama, we demonstrate that the current community organization on disturbed coral reefs in the Mesoamerican Caribbean is largely due to the action of E. viridis. It is the most abundant sea-urchin species, together with two others (Diadema antillarum and Echinometra lucunter). Field data also indicate that the relationship between its density and the abundance of macroalgae is stronger and it is more negative in impact than those of the other two. However, the niche this urchin exploits most efficiently is confined to leeward reefs with low levels of sedimentation. Outside these habitats, their populations are not decisive in controlling macroalgal growth. Grazing experiments showed that E. viridis consumes more fresh macroalgae per day and per weight of sea-urchin, and is a more effective grazer than D. antillarum or E. lucunter. E. viridis showed food preferences for early-successional turf macroalgae (Acanthophora spicifera), avoiding the less palatable late-successional and fleshy macroalgae (Lobophora variegata, Halimeda opuntia). However, it becomes a generalist herbivore feeding on all varieties of macroalgae when resources are scarce. H. opuntia is the macroalga that most resists E. viridis activity, which may explain its wide distribution. PMID:27591516

  1. Leaf oxygen and Carbon Isotopic Signatures Reflect Drought Resistance and Water Use Efficiency in the C4 Grass, Setaria viridis

    Science.gov (United States)

    Ellsworth, P.; Cousins, A. B.

    2014-12-01

    Low water availability is a major constraint in crop production, especially as agriculture is pushed to marginal lands. Therefore, improving drought resistance such as increasing water use efficiency (WUE) through plant breeding is needed to expand the range of soil water availability adequate for food production. With the goal of finding the genomic basis for WUE in C4 grasses, Setaria viridis makes an ideal model species because of its small size, short lifespan, and sequenced genome. Also it is part of the panicoid grass clade, which is one of the most important clades for food and biofuel production. In plant breeding programs, large numbers of genotypes must be quickly screened for drought resistance traits, but there is no well-defined method of screening for WUE in C4 grasses. However, bulk leaf oxygen (Δ18OBL) and carbon (δ13C) isotopic signatures have shown potential as recorders of transpiration rate (E) and stomatal conductance (gs), and combined with biomass production potentially serve as a measure of WUE. Values of Δ18OBL record differences in transpiration rate because leaf water becomes more enriched as transpiration rate decreases, and leaf tissue records the isotopic composition of leaf water in which it is synthesized. Additionally, in C4 plants δ13C values decrease as gs decreases but the change in δ13C in response to gs may not be adequate to tease apart differences in WUE. In this study, we grew S. viridis plants under well-watered and water-limited conditions to determine if Δ18OBL and δ13C could be used as proxies for E and gs, and be used to screen S. viridis for differences in WUE in breeding programs. The Δ18OBL and δ13C were significantly different between well-watered and water-limited plants and correlated with each other and with E, gs, and instantaneous water use efficiency (Anet/gs). Therefore, Δ18OBL and δ13C can be useful proxies to screen genotypes for drought resistance by recording differences in E, gs, and WUE

  2. Epstein-Barr virus-encoded latent membrane protein 1 modulates cyclin D1 by c-Jun/Jun B heterodimers

    Institute of Scientific and Technical Information of China (English)

    SONG; Xin; TAO; Yongguang; ZENG; Liang; YANG; Jing; TANG; F

    2005-01-01

    In our recent studies, we found that LMP1 encoded by Epstein-Barr virus could accelerate the formation of active c-Jun/Jun B heterodimer. We studied the regulation of cyclinD1 by c-Jun/Jun B heterodimers by laser scanning confocal influorescence microscopy, Western blot, luciferase activity assay, super-EMSA and flow cytometry in the Tet-on-LMP1 HNE2 cell line, in which LMP1 expression was regulated by Tet-on system. c-Jun/Jun B heterodimers induced by LMP1 could up regulate cyclin D1 promoter activity and expression. Overexpression of cyclinD1 accelerated the progression of cell cycle.

  3. KARP-1 works as a heterodimer with Ku70, but the function of KARP-1 cannot perfectly replace that of Ku80 in DSB repair.

    Science.gov (United States)

    Koike, Manabu; Yutoku, Yasutomo; Koike, Aki

    2011-10-01

    Ku, the heterodimer of Ku70 and Ku80, plays an essential role in the DNA double-strand break (DSB) repair pathway, i.e., non-homologous end-joining (NHEJ). Two isoforms of Ku80 encoded by the same genes, namely, Ku80 and KARP-1 are expressed and function in primate cells, but not in rodent cells. Ku80 works as a heterodimer with Ku70. However, it is not yet clear whether KARP-1 forms a heterodimer with Ku70 and works as a heterodimer. Although KARP-1 appears to work in NHEJ, its physiological role remains unclear. In this study, we established and characterized EGFP-KARP-1-expressing xrs-6 cell lines, EGFP-KARP-1/xrs-6. We found that nuclear localization signal (NLS) of KARP-1 is localized in the C-terminal region. Our data showed that KARP-1 localizes within the nucleus in NLS-dependent and NLS-independent manner and forms a heterodimer with Ku70, and stabilizes Ku70. On the other hand, EGFP-KARP-1 could not perfectly complement the radiosensitivity and DSB repair activity of Ku80-deficient xrs-6 cells. Furthermore, KARP-1 could not accumulate at DSBs faster than Ku80, although EGFP-KARP-1 accumulates at DSBs. Our data demonstrate that the function of KARP-1 could not perfectly replace that of Ku80 in DSB repair, although KARP-1 has some biochemical properties, which resemble those of Ku80, and works as a heterodimer with Ku70. On the other hand, the number of EGFP-KARP-1-expressing xrs-6 cells showing pan-nuclear γ-H2AX staining significantly increases following X-irradiation, suggesting that KARP-1 may have a novel role in DSB response.

  4. Partially Purified Extracts of Sea Anemone Anemonia viridis Affect the Growth and Viability of Selected Tumour Cell Lines

    Science.gov (United States)

    Bulati, Matteo; Longo, Alessandra; Vlah, Sara; Bennici, Carmelo; Bonura, Angela; Tagliavia, Marcello; Mazzola, Salvatore

    2016-01-01

    In the last few years, marine species have been investigated for the presence of natural products with anticancer activity. Using reversed phase chromatography, low molecular weight proteins were fractionated from the sea anemone Anemonia viridis. Four different fractions were evaluated for their cytotoxic activity by means of erythrocyte haemolysis test, MTS, and LDH assays. Finally, the antiproliferative activities of three of these fractions were studied on PC3, PLC/PRF/5, and A375 human cancer cell lines. Our analysis revealed that the four fractions showed different protein contents and diverse patterns of activity towards human PBMC and cancer cell lines. Interestingly, fractions III and IV exerted cytotoxic effects on human cells. Conversely, fractions I and II displayed very low toxic effects associated with antiproliferative activities on cancer cell lines. PMID:27725939

  5. Qualitative Assessment and Management of Microplastics in Asian Green Mussels (Perna viridis Cultured in Bacoor Bay, Cavite, Phillipines

    Directory of Open Access Journals (Sweden)

    Cristian Ryan Argamino

    2016-07-01

    Full Text Available Microplastics (> 5 mm have gained popularity in research and the public eye in recent years. This is due to the fact that they contain persistent organic pollutants (POPs which pose potential risks to the environment and human health. Bivalves, which are filter feeders, are considered to be good indicators of marine pollution. In this preliminary study, Asian green mussel (Perna viridis, an example of edible bivalve, cultured in Bacoor Bay, Cavite, Philippines was subjected to qualitative analysis to determine the presence of microplastics. Through microscopic analysis, microplastics were found present in the acid-digested mussel soft tissue. A management program is suggested for policy makers and stakeholders to reduce the negative impact of microplastic pollution to both humans and the marine environment.

  6. Additional observations and notes on the natural history of the prairie rattlesnake (Crotalus viridis) in Colorado.

    Science.gov (United States)

    Fitzgerald, Kevin T; Shipley, Bryon K; Newquist, Kristin L; Vera, Rebecca; Flood, Aryn A

    2013-11-01

    On account of their unique anatomy, physiology, natural history, ecology, and behavior, rattlesnakes make ideal subjects for a variety of different scientific disciplines. The prairie rattlesnake (Crotalus viridis) in Colorado was selected for investigation of its relationship to colonies of black-tailed prairie dogs (Cynomys ludovicianus) with regard to spatial ecology. A total of 31 snakes were anesthetized and had radiotransmitters surgically implanted. In addition, at the time of their capture, all snakes underwent the following: (1) they had bacterial culture taken from their mouths for potential isolation of pathogenic bacteria; (2) similarly, they had cloacal bacterial cultures taken to assess potentially harmful bacteria passed in the feces; and (3) they had blood samples drawn to investigate the presence of any zoonotic agents in the serum of the snakes. The results of the study and their implications are discussed here. Traditionally, a low incidence of bacterial wound infection has been reported following snakebite. Nevertheless, the oral cavity of snakes has long been known to house a wide variety of bacterial flora. In our study, 10 different bacterial species were isolated from the mouths of the rattlesnakes, 6 of which are capable of being zoonotic pathogens and inducing human disease. More studies are necessary to see why more rattlesnake bites do not become infected despite the presence of such pathogenic bacteria. The results of fecal bacteria isolated revealed 13 bacterial species, 12 of which can cause disease in humans. Of the snakes whose samples were cultured, 26% were positive for the presence of the pathogen Salmonella arizonae, one of the causative agents of reptile-related salmonellosis in humans. It has long been reported that captive reptiles have a much higher incidence than wild, free-ranging species. This study shows the incidence of Salmonella in a wild, free-ranging population of rattlesnakes. In addition, Stenotrophomonas

  7. Studies on zinc(II)-biosorption capability of a filamentous green algal species (mougeotia viridis) isolated from electroplating wastewater

    International Nuclear Information System (INIS)

    The biosorption capacity of zinc(II) by a filamentous green alga Mougeotia viridis, isolated from the wastewater discharged by electroplating industry was tested under laboratory conditions as a function of contact time, pH, and initial metal ion and biomass concentrations. Optimum pH value for zinc(II) biosorption was determined as 5.0. At 10 mg 1.1 zinc(II), the biosorption equilibrium with I g I-I algal biomass was reached in 10 min showing a relative efficiency of 59.24% metal removal. When the bio sorbent biomass was increased to 2 g I-I, the metal removal capacity was enhanced to 81.4%. At optimum conditions, zinc(II) uptake increased with the increase in initial metal ion concentration from 5-300 mg I-I. Langmuir isotherm model was found to be suitable for describing the biosorption of zinc(II) by Mougeotia viridis. The q/sub max/ obtained experimentally and theoretically calculated from the Langmuir isotherm model at the regression coefficient value of 0.9975, respectively, were 27.7 mg and 26.71 mg zinc(II) g-I algal biomass, at the initial metal concentration of 200 mg/sup i//sup -I/; In five repeated biosorption-desorption cycles, the zinc(II) desorption from the metal-loaded algal biomass remained around 99%. The observations reported in the present study indicate that the alga can be used as an efficient bio sorbent for the removal of zinc(II) from aqueous solution. (author)

  8. Cobalt and manganese stress in the microalga Pavlova viridis (Prymnesiophyceae): Effects on lipid peroxidation and antioxidant enzymes

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Pollution of marine environment has become an issue of major concern in recent years. Serious environmental pollution by heavy metals results from their increasing utilization in industrial processes and because most heavy metals are transported into the marine environment and accumulated without decomposition. The aim of the present study is to investigate the effects on growth, pigments, lipid peroxidation, and some antioxidant enzyme activities of marine microalga Pavlova. viridis, in response to elevated concentrations of cobalt (Co) and manganese (Mn), especially with regard to the involvement of antioxidative defences against heavy metal-induced oxidative stress. In response to Co2+, lipid peroxidation was enhanced compared to the control, as an indication of the oxidative damage caused by metal concentration assayed in the microalgal cells but not Mn2+. Exposure of P. viridis to the two metals caused changes in enzyme activities in a different manner, depending on the metal assayed: after Co2+ treatments, total superoxide dismutase (SOD) activity was irregular, although it was not significantly affected by Mn2+ exposure. Co2+ and Mn2+ stimulated the activities of catalase (CAT) and glutathione (GSH), whereas, glutathione peroxidase (GPX) showed a remarkable increase in activity in response to Co2+ treatments and decreased gradually with Mn2+ concentration, up to 50 μmol/L, and then rose very rapidly, reaching to about 38.98% at 200 μmol/L Mn2+. These results suggest that an activation of some antioxidant enzymes was enhanced, to counteract the oxidative stress induced by the two metals at higher concentration.

  9. Analysis of [Gossypium capitis-viridis × (G.hirsutum × G.australe2] Trispecific Hybrid and Selected Characteristics.

    Directory of Open Access Journals (Sweden)

    Di Chen

    Full Text Available Speciation is always a contentious and challenging issue following with the presence of gene flow. In Gossypium, there are many valuable resources and wild diploid cotton especially C and B genome species possess some excellent traits which cultivated cotton always lacks. In order to explore character transferring rule from wild cotton to upland tetraploid cotton, the [G. capitis-viridis × (G. hirsutum × G. australe2] triple hybrid was synthesized by interspecies hybridization and chromosome doubling. Morphology comparisons were measured among this hybrid and its parents. It showed that trispecific hybrid F1 had some intermediate morphological characters like leaf style between its parents and some different characters from its parents, like crawl growth characteristics and two kind flower color. It is highly resistant to insects comparing with other cotton species by four year field investigation. By cytogenetic analysis, triple hybrid was further confirmed by meiosis behavior of pollen mother cells. Comparing with regular meiosis of its three parents, it was distinguished by the occurrence of polyads with various numbers of unbalanced microspores and finally generating various abnormal pollen grains. All this phenomenon results in the sterility of this hybrid. This hybrid was further identified by SSR marker from DNA molecular level. It showed that 98 selected polymorphism primers amplified effective bands in this hybrids and its parents. The genetic proportion of three parents in this hybrid is 47.8% from G. hirsutum, 14.3% from G. australe, 7.0% from G. capitis-viridis, and 30.9% recombination bands respectively. It was testified that wild genetic material has been transferred into cultivated cotton and this new germplasm can be incorporated into cotton breeding program.

  10. Lophotrochozoan neuroanatomy: An analysis of the brain and nervous system of Lineus viridis(Nemertea using different staining techniques

    Directory of Open Access Journals (Sweden)

    Loesel Rudi

    2011-07-01

    Full Text Available Abstract Background The now thriving field of neurophylogeny that links the morphology of the nervous system to early evolutionary events relies heavily on detailed descriptions of the neuronal architecture of taxa under scrutiny. While recent accounts on the nervous system of a number of animal clades such as arthropods, annelids, and molluscs are abundant, in depth studies of the neuroanatomy of nemerteans are still wanting. In this study, we used different staining techniques and confocal laser scanning microscopy to reveal the architecture of the nervous system of Lineus viridis with high anatomical resolution. Results In L. viridis, the peripheral nervous system comprises four distinct but interconnected nerve plexus. The central nervous system consists of a pair of medullary cords and a brain. The brain surrounds the proboscis and is subdivided into four voluminous lobes and a ring of commissural tracts. The brain is well developed and contains thousands of neurons. It does not reveal compartmentalized neuropils found in other animal groups with elaborate cerebral ganglia. Conclusions The detailed analysis of the nemertean nervous system presented in this study does not support any hypothesis on the phylogenetic position of Nemertea within Lophotrochozoa. Neuroanatomical characters that are described here are either common in other lophotrochozoan taxa or are seemingly restricted to nemerteans. Since detailed descriptions of the nervous system of adults in other nemertean species have not been available so far, this study may serve as a basis for future studies that might add data to the unsettled question of the nemertean ground pattern and the position of this taxon within the phylogenetic tree.

  11. 大青叶蝉寄主植物名录%Catalogue of Host Plants of Cicadella viridi L.(Hemiptera: Cicadellidae)

    Institute of Scientific and Technical Information of China (English)

    高宇; 韩琪; 徐博

    2015-01-01

    在田间调查和查阅国内外文献的基础上,整理出大青叶蝉(Cicadella viridis L.)寄主植物名录,主要涉及裸子植物、双子叶植物和单子叶植物,共计3纲65科275种(含变型、亚种和变种).

  12. Molecular identification of Dunaliella viridis Teod. strain MSV-1 utilizing rDNA ITS sequences and its growth responses to salinity and copper toxicity

    Directory of Open Access Journals (Sweden)

    Ali Moradshahi

    2012-01-01

    Full Text Available In addition to biochemical, physiological and morphological analysis, molecular studies provide additional information for establishing phylogenetic relationships among different species and strains of the genus Dunaliella. In the present study, based on neighbor- joining analysis of the nuclear rDNA ITS sequence, a novel strain of the green algae Dunaliella viridis was identified from Maharlu salt lake in Shiraz, Iran. The phylogenetic tree shows that the new strain is part of a clade containing several strains of D. viridis. The new strain was designated Dunaliella viridis MSV-1 and submitted to the GenBank under the accession number HQ864830. The optimum salinity for MSV-1 growth is between 1.0 to 1.5 M NaCl and does not turn red up to 4.5 M NaCl, confirming identity of the isolated strain. With respect to growth response to copper toxicity, increase in Cu2+ concentration from 1 to 30 µM, caused progressive increase in cell number ml-1 of culture over time, whereas reduction in cell number occurred at 100 and 200 µM Cu+2. Nano copper (colloidal copper with 40 nm dimensions showed less toxicity compared to the ionic form. Cell number ml-1 of culture did not change up to 200 µM nano copper but decreased at 500 µM. In conclusion, the analysis of the ITS sequence is a reliable basis for establishing evolutionary relationships among species and strains of the genus Dunaliella and due to rapid growth at 1.5 M NaCl and high cell density, D. viridis MSV-1 is a good candidate for biofuel production from microalgae.

  13. Molecular identification of Dunaliella viridis Teod. strain MSV-1 utilizing rDNA ITS sequences and its growth responses to salinity and copper toxicity

    OpenAIRE

    Ali Moradshahi; Hajar Zamani; Mansour Kharati-KoupaeI

    2012-01-01

    In addition to biochemical, physiological and morphological analysis, molecular studies provide additional information for establishing phylogenetic relationships among different species and strains of the genus Dunaliella. In the present study, based on neighbor- joining analysis of the nuclear rDNA ITS sequence, a novel strain of the green algae Dunaliella viridis was identified from Maharlu salt lake in Shiraz, Iran. The phylogenetic tree shows that the new strain is part of a clade contai...

  14. Different ways to die: cell death modes of the unicellular chlorophyte Dunaliella viridis exposed to various environmental stresses are mediated by the caspase-like activity DEVDase

    OpenAIRE

    Jiménez, Carlos; Capasso, Juan M.; Edelstein, Charles L.; Rivard, Christopher J.; Lucia, Scott; Breusegem, Sophia; Berl, Tomás; Segovia, María

    2009-01-01

    Programmed cell death is necessary for homeostasis in multicellular organisms and it is also widely recognized to occur in unicellular organisms. However, the mechanisms through which it occurs in unicells, and the enzymes involved within the final response is still the subject of heated debate. It is shown here that exposure of the unicellular microalga Dunaliella viridis to several environmental stresses, induced different cell death morphotypes, depending on the stimulus received. Senescen...

  15. Morphostasis in a novel eukaryote illuminates the evolutionary transition from phagotrophy to phototrophy: description of Rapaza viridis n. gen. et sp. (Euglenozoa, Euglenida

    Directory of Open Access Journals (Sweden)

    Yamaguchi Aika

    2012-03-01

    Full Text Available Abstract Background Morphostasis of traits in different species is necessary for reconstructing the evolutionary history of complex characters. Studies that place these species into a molecular phylogenetic context test hypotheses about the transitional stages that link divergent character states. For instance, the transition from a phagotrophic mode of nutrition to a phototrophic lifestyle has occurred several times independently across the tree of eukaryotes; one of these events took place within the Euglenida, a large group of flagellates with diverse modes of nutrition. Phototrophic euglenids form a clade that is nested within lineages of phagotrophic euglenids and that originated through a secondary endosymbiosis with green algae. Although it is clear that phototrophic euglenids evolved from phagotrophic ancestors, the morphological disparity between species representing these different nutritional modes remains substantial. Results We cultivated a novel marine euglenid, Rapaza viridis n. gen. et sp. ("green grasper", and a green alga, Tetraselmis sp., from the same environment. Cells of R. viridis were comprehensively characterized with light microscopy, SEM, TEM, and molecular phylogenetic analysis of small subunit rDNA sequences. Ultrastructural and behavioral observations demonstrated that this isolate habitually consumes a specific strain of Tetraselmis prey cells and possesses a functional chloroplast that is homologous with other phototrophic euglenids. A novel feeding apparatus consisting of a reduced rod of microtubules facilitated this first and only example of mixotrophy among euglenids. R. viridis also possessed a robust photoreception apparatus, two flagella of unequal length, euglenoid movement, and a pellicle consisting of 16 strips and one (square-shaped whorl of posterior strip reduction. The molecular phylogenetic data demonstrated that R. viridis branches as the nearest sister lineage to phototrophic euglenids

  16. Increasing pCO2 correlates with low concentrations of intracellular dimethylsulfoniopropionate in the sea anemone Anemonia viridis.

    Science.gov (United States)

    Borell, Esther M; Steinke, Michael; Horwitz, Rael; Fine, Maoz

    2014-02-01

    Marine anthozoans maintain a mutualistic symbiosis with dinoflagellates that are prolific producers of the algal secondary metabolite dimethylsulfoniopropionate (DMSP), the precursor of the climate-cooling trace gas dimethyl sulfide (DMS). Surprisingly, little is known about the physiological role of DMSP in anthozoans and the environmental factors that regulate its production. Here, we assessed the potential functional role of DMSP as an antioxidant and determined how future increases in seawater pCO2 may affect DMSP concentrations in the anemone Anemonia viridis along a natural pCO2 gradient at the island of Vulcano, Italy. There was no significant difference in zooxanthellae genotype and characteristics (density of zooxanthellae, and chlorophyll a) as well as protein concentrations between anemones from three stations along the gradient, V1 (3232 μatm CO2), V2 (682 μatm) and control (463 μatm), which indicated that A. viridis can acclimate to various seawater pCO2. In contrast, DMSP concentrations in anemones from stations V1 (33.23 ± 8.30 fmol cell(-1)) and V2 (34.78 ± 8.69 fmol cell(-1)) were about 35% lower than concentrations in tentacles from the control station (51.85 ± 12.96 fmol cell(-1)). Furthermore, low tissue concentrations of DMSP coincided with low activities of the antioxidant enzyme superoxide dismutase (SOD). Superoxide dismutase activity for both host (7.84 ± 1.37 U·mg(-1) protein) and zooxanthellae (2.84 ± 0.41 U·mg(-1) protein) at V1 was 40% lower than at the control station (host: 13.19 ± 1.42; zooxanthellae: 4.72 ± 0.57 U·mg(-1) protein). Our results provide insight into coastal DMSP production under predicted environmental change and support the function of DMSP as an antioxidant in symbiotic anthozoans. PMID:24634728

  17. Urban secondary sewage: an alternative medium for the culture of Tetraselmis chuii (Prasinophyceae and Dunaliella viridis (Chlorophyceae

    Directory of Open Access Journals (Sweden)

    Rauquírio André Albuquerque Marinho da Costa

    2004-07-01

    Full Text Available The effect of different concentrations (10, 20, 30 and 40% of urban secondary sewage on the growth of Tetraselmis chuii (Prasinophyceae and Dunaliella viridis (Chlorophyceae was examined to verify the possibility of its use as an alternative culture medium for these species. Stocks and 700mL duplicate batch cultures were maintained under controlled laboratory conditions. 30% and 40% additions were the most efficient for the growth of both species. Statistical analysis of the adjusted growth (cell.mL-1 and biomass (µg chlorophyll-a.mL-1 curves performed using the Chi-square test (pFoi estudado o efeito das diferentes concentrações de esgoto urbano secundário (10%, 20%, 30% e 40% sobre o crescimento de Tetraselmis chuii (Prasinophyceae e Dunaliellla viridis (Chlorophyceae para verificar a possibilidade do seu uso como meio de cultura altenativo para estas espécies. Culturas stocks duplicatas de 700mL foram mantidas sob condições de laboratório controladas. As adições de 30% e 40% foram as mais eficientes para o crescimento de ambas as espécies. Análises estatísticas para o ajuste do crescimento (cel.mL-1 e curvas de biomassa (µg clorofila-a.mL-1 em relação ao tempo de cultura desenvolvidas usando Chi-square test (p<0.05, demonstraram diferenças significativas entre o meio nutritivo f/2 e a adição de 40% usada para estas duas espécies. Os resultados sugerem que algumas das concentrações testadas, rendem densidades celulares e taxas de crescimento satisfatórias quando comparados com outros meios de cultura (macroalga, estratos de esterco bovino e de galinha sendo um meio altenativo que pode ser usado para sistemas de aquicultura semi intensivos devido aos baixos custos e fácil aquisição.

  18. NMR-based metabolomic studies on the toxicological effects of cadmium and copper on green mussels Perna viridis

    Energy Technology Data Exchange (ETDEWEB)

    Wu Huifeng [Section of Marine Ecology and Biotechnology, Division of Life Science, Hong Kong University of Science and Technology (HKUST), Clear Water Bay, Kowloon (Hong Kong); Wang Wenxiong, E-mail: wwang@ust.hk [Section of Marine Ecology and Biotechnology, Division of Life Science, Hong Kong University of Science and Technology (HKUST), Clear Water Bay, Kowloon (Hong Kong)

    2010-11-15

    Traditional toxicology studies have focused on selected biomarkers to characterize the biological stress induced by metals in marine organisms. In this study, a system biology tool, metabolomics, was applied to the marine mussel Perna viridis to investigate changes in the metabolic profiles of soft tissue as a response to copper (Cu) and cadmium (Cd), both as single metal and as a mixture. The major metabolite changes corresponding to metal exposure are related to amino acids, osmolytes, and energy metabolites. Following metal exposure for 1 week, there was a significant increase in the levels of branched chain amino acids, histidine, glutamate, glutamine, hypotaurine, dimethylglycine, arginine and ATP/ADP. For the Cu + Cd co-exposed mussels, the levels of lactate, branched chain amino acid, succinate, and NAD increased, whereas the levels of glucose, glycogen, and ATP/ADP decreased, indicating a different metabolic profile for the single metal exposure groups. After 2 weeks of exposure, the mussels showed acclimatization to Cd exposure based on the recovery of some metabolites. However, the metabolic profile induced by the metal mixture was very similar to that from Cu exposure, suggesting that Cu dominantly induced the metabolic disturbances. Both Cu and Cd may lead to neurotoxicity, disturbances in energy metabolism, and osmoregulation changes. These results demonstrate the high applicability and reliability of NMR-based metabolomics in interpreting the toxicological mechanisms of metals using global metabolic biomarkers.

  19. Preliminary assessment of growth and survival of green alder (Alnus viridis), a potential biological stabilizer on fly ash disposal sites

    Institute of Scientific and Technical Information of China (English)

    Marcin Pietrzykowski; Wojciech Krzaklewski; Bartłomiej Wos´

    2015-01-01

    This paper presents preliminary assessment of seedling survival and growth of green alder (Alnus viridis (Chaix) DC. in Lam. & DC.) planted on fly ash disposal sites. This kind of post-industrial site is extremely hard to biologically stabilize without top-soiling. The experiment started with surface preparation using NPK start-up mineral fertilizer at 60–36–36 kg ha-1 followed by initial stabil-ization through hydro-seeding with biosolids (sewage sludge 4 Mg ha-1 dry mass) and a mixture of grasses (Dactylis glomerata L. and Lolium multiflorum Lam.) (200 kg ha-1). Subsequently, three-years-old green alder seedlings were planted in plots on two substrate variants:the control (directly on combustion waste) and plots with 3 dm3 lignite culm from a nearby mine introduced into the planting pit. Five years of preliminary monitoring show good survival seedling rates and growth parameters (height (h), average increase in height (△h), number of shoots (Lo) and leaf nitrogen supply in the fly ash disposal habitat. Treatment of the site with a combination of lignite culm in planting pits and preliminary surface preparation by hydro-seeding and mineral fertilization had the most positive effect on green alder seedling parameters. The results indicate that it is possible and beneficial to use green alder for biological stabilization on fly ash disposal sites.

  20. Temporal variations of heavy metals levels in Perna viridis, on the Chacopata-Bocaripo lagoon axis, Sucre State, Venezuela

    International Nuclear Information System (INIS)

    Highlights: • Heavy metal concentrations were within levels allowed worldwide (FAO, BFL, FDA). • The highest concentration of heavy metals was found during the drought period. • Significant relationships amid size and metal concentration only found in drought. - Abstract: Perna viridis was used as biomonitor to assess heavy metal levels in the Chacopata-Bocaripo lagoon axis, Venezuela, during rain and drought seasons. The mussels were weighed and measured. The metal concentrations were determined by atomic absorption spectrophotometry. For rain period, the order of bioavailability was: Cu > Ni > Mn > Co > Cd > Pb, and for drought: Cu > Mn > Ni > Co > Pb > Cd. The concentrations of Ni, Co, Cd and Pb showed significant differences (P < 0.05) in both periods. There was higher metal accumulation during drought season, possibly related to upwelling, since it produces an increase in primary productivity, which translates more food into organisms, making metals bioavailable for mussels. Only Cu and Mn showed significant relationships between the size and metal concentration, during drought period, it may be because of the organisms need for these essential metals in different physiological processes

  1. The characterization of two peroxiredoxin genes in Dunaliella viridis provides insights into antioxidative response to salt stress.

    Science.gov (United States)

    Yuan, Huijuan; Meng, Xiangzong; Gao, Qiang; Qu, Wufei; Xu, Tengjiao; Xu, Zhengkai; Song, Rentao

    2011-08-01

    Peroxiredoxins (Prxs), a group of antioxidant enzymes, are an important component of the oxidative defense system and have been demonstrated to function as peroxidases, sensors of H(2)O(2)-mediated signaling and/or chaperones. In this study, a cDNA library was constructed from a halotolerant alga, Dunaliella viridis, and was used in a functional complementation screen for antioxidative genes in an oxidative sensitive yeast mutant. Two Prx genes, DvPrx1 and DvPrx2, were obtained from this screen. These two genes were classified as type II Prx and 2-Cys Prx based on amino acid sequence and phylogenetic analysis. When over-expressed in yeast cells, both Prx genes were able to confer better oxidative tolerance and decrease the level of reactive oxygen species (ROS). Subcellular localization experiments in tobacco cells revealed that both DvPrx1 and DvPrx2 were localized in the cytosol. The transcription of DvPrx1 and DvPrx2 can be induced by hypersalinity shock, but is not obviously affected by treatment with high levels of oxidant. Our results shed light on the function and regulation of Prx genes from Dunaliella and their potential roles in salt tolerance. PMID:21431909

  2. Phosphorylation of MAP kinase-like proteins mediate the response of the halotolerant alga Dunaliella viridis to hypertonic shock.

    Science.gov (United States)

    Jiménez, Carlos; Berl, Tomas; Rivard, Christopher J; Edelstein, Charles L; Capasso, Juan M

    2004-02-01

    The microalga Dunaliella viridis has the ability to adapt to a variety of environmental stresses including osmotic and thermal shocks, UV irradiation and nitrogen starvation. Lacking a rigid cell wall, Dunaliella provides an excellent model to study stress signaling in eukaryotic unicellular organisms. When exposed to hyperosmotic stress, UV irradiation or high temperature, a 57-kDa protein is recognized by antibodies specific to mammalian p38, to its yeast homologue Hog1, and to the phospho-p38 MAP kinase motif. This 57-kDa protein appears to be both up-regulated and phosphorylated. Three other proteins (50, 45, 43 kDa) were transiently phosphorylated under stress conditions as detected with an antibody specific to the mammalian phospho c-Jun N-terminal kinase (JNK) motif. Treatment with specific inhibitors of p38 MAP kinase (SB203580) and JNK (SP600125) activities markedly impaired the adaptation of Dunaliella to osmotic stress. From an evolutionary standpoint, these data strongly suggest that MAP kinase signaling pathways, other than ERK, were already operating in the common ancestor of plant and animal kingdoms, probably as early as 1400 million years ago. PMID:14741745

  3. Effects of aqueous and dietary preexposure and resulting body burden on silver biokinetics in the green mussel Perma viridis.

    Science.gov (United States)

    Shi, Dalin; Blackmore, Graham; Wang, Wen-Xiong

    2003-03-01

    To determine whether preexposure of green mussel Perna viridis to Ag influenced metal uptake kinetics we compared various physiological indicators of metal uptake kinetics between the control mussels and mussels preexposed to Ag in both diet and water at different levels (up to 5 weeks). In all preexposed mussels, the assimilation of Ag increased by 1.1-3.0 times with increasing Ag body concentration (0.651-19.3 microg g(-1)) as compared with the controls (Ag body concentration of 0.311-0.479 microg g(-1)), whereas the efflux rate constants decreased by 45-88%. There was no significant increase in Ag associated with the metallothionein-like protein (MTLP) fraction following exposure of the mussels to Ag through either the dissolved or food phase. The clearance rates were little affected or depressed byAg preexposure, and the relationship between the Ag influx rate from the dissolved phase and the Ag preexposure was somewhat complicated. The influx rate decreased with increasing Ag body burden at <2.5 microg g(-1), above which it increased with increasing Ag body burden. Our results indicate that the mussels may modify physiological processes to ambient chronic Ag exposure, consequently accumulating more Ag. Ag body concentration in these mussels may therefore increase disproportionally in response to increasing Ag concentration in the ambient environments. Ag preexposure and resulting body burden should be considered carefully when interpreting the observed Ag concentration in biomonitoring animals to evaluate the Ag pollution in seawater.

  4. Chlorination-induced genotoxicity in the mussel Perna viridis: assessment by single cell gel electrophoresis (comet) assay.

    Science.gov (United States)

    Chavan, Pooja; Kumar, Rajesh; Kirubagaran, Ramalingam; Venugopalan, Vayalam P

    2016-08-01

    Mussels are important fouling organisms in the cooling water systems of coastal power plants. Continuous low-dose chlorination (CLDC) is being practiced as an effective method to control mussel biofouling in power plant cooling water systems. CLDC effectively controls mussel fouling by discouraging larval settlement rather than by killing the larvae or adults. Mussels are an integral part of the natural benthic community in the receiving water body where the coolant water is discharged. Hence, from a toxicological point of view, they can serve as both target and non-target organisms. Previous researchers have indicated that chlorine residual, rather than elevated temperature, can be the major stress factor in the effluents released from coastal power plants. However, very little data are available on the sub-lethal effects of low level chlorination on representative benthic fauna. In this study, we used native and transplanted mussels (Perna viridis) to study lethal and sub-lethal effects of chlorination in the cooling water circuit of an operating power plant. Experiments involving comet assay suggested that CLDC can cause DNA damage in treated mussels. However, activation of DNA repair appeared to get initiated after the accrued damage reached a threshold. The results indicate that, at chlorine residual levels observed at the discharge point, exposure to chlorinated effluents is unlikely to cause significant genetic damage to mussels in the recipient water body. PMID:27155389

  5. Phosphorylation of Ku70 subunit by cell cycle kinases modulates the replication related function of Ku heterodimer

    Science.gov (United States)

    Mukherjee, Soumita; Chakraborty, Prabal; Saha, Partha

    2016-01-01

    The Ku protein, a heterodimer of Ku70 and Ku80, binds to chromosomal replication origins maximally at G1-phase and plays an essential role in assembly of origin recognition complex. However, the mechanism regulating such a critical periodic activity of Ku remained unknown. Here, we establish human Ku70 as a novel target of cyclin B1-Cdk1, which phosphorylates it in a Cy-motif dependent manner. Interestingly, cyclin E1- and A2-Cdk2 also phosphorylate Ku70, and as a result, the protein remains in a phosphorylated state during S-M phases of cell cycle. Intriguingly, the phosphorylation of Ku70 by cyclin-Cdks abolishes the interaction of Ku protein with replication origin due to disruption of the dimer. Furthermore, Ku70 is dephosphorylated in G1-phase, when Ku interacts with replication origin maximally. Strikingly, the over-expression of Ku70 with non-phosphorylable Cdk targets enhances the episomal replication of Ors8 origin and induces rereplication in HeLa cells, substantiating a preventive role of Ku phosphorylation in premature and untimely licensing of replication origin. Therefore, periodic phosphorylation of Ku70 by cyclin-Cdks prevents the interaction of Ku with replication origin after initiation events in S-phase and the dephosphorylation at the end of mitosis facilitates its participation in pre-replication complex formation. PMID:27402161

  6. Heterodimer formation between c-Jun and Jun B proteins mediated by Epstein Barr virus encoded latent membrane protein 1

    Institute of Scientific and Technical Information of China (English)

    SONG; Xin; TAO; Yongguang; TAN; Yunnian; Leo; M.; Lee; DENG

    2005-01-01

    Epstein-Barr virus (EBV) encoded latent membrane protein 1 (LMP1) may trigger the transcription factor AP-1 including c-Jun and c-fos. In this report, using a Tet-on LMP1 HNE2 cell line which is a dual-stable LMP1 integrated nasopharyngeal carcinoma (NPC) cell line and the expression of LMP1 in which could be regulated by the Tet-on system, we show that Jun B can efficiently form a new heterodimeric complex with the c-Jun protein under the regulation of LMP1, phosphorylation of c-Jun (ser 63, ser 73) and Jun B is involved in the process of the new heterodimeric formation. We also find that this heterodimeric form can bind to the AP-1 consensus sequence. Transfection studies suggest that JNK interaction protein (JIP) could inhibit the heterodimer formation of c-Jun and Jun B through blocking the AP-1 signaling pathway triggered by LMP1. The interaction and function between c-Jun protein and Jun B protein increase the repertoire of possible regulatory complexes by LMP1 that could play an important role in the regulation of transcription of specific cellular genes in the process of genesis of nasopharyngeal carcinoma.

  7. A Pleiotropic Role for the Orphan Nuclear Receptor Small Heterodimer Partner in Lipid Homeostasis and Metabolic Pathways

    Directory of Open Access Journals (Sweden)

    Gabriella Garruti

    2012-01-01

    Full Text Available Nuclear receptors (NRs comprise one of the most abundant classes of transcriptional regulators of metabolic diseases and have emerged as promising pharmaceutical targets. Small heterodimer partner (SHP; NR0B2 is a unique orphan NR lacking a DNA-binding domain but contains a putative ligand-binding domain. SHP is a transcriptional regulator affecting multiple key biological functions and metabolic processes including cholesterol, bile acid, and fatty acid metabolism, as well as reproductive biology and glucose-energy homeostasis. About half of all mammalian NRs and several transcriptional coregulators can interact with SHP. The SHP-mediated repression of target transcription factors includes at least three mechanisms including direct interference with the C-terminal activation function 2 (AF2 coactivator domains of NRs, recruitment of corepressors, or direct interaction with the surface of NR/transcription factors. Future research must focus on synthetic ligands acting on SHP as a potential therapeutic target in a series of metabolic abnormalities. Current understanding about the pleiotropic role of SHP is examined in this paper, and principal metabolic aspects connected with SHP function will be also discussed.

  8. Cooperative Heterodimer Formation Between Per-Guadinylated and Carboxylated or Phosporylated Cyclodextrins in DMSO and DMSO-Water Studied by NMR Spectroscopy and Microcalorimetry

    OpenAIRE

    Yannakopoulou, Konstantina; Nounesis, George; Thanassoulas, Angelos; Fotiadou, Katerina

    2011-01-01

    Abstract The anionic cyclodextrins (CDs), heptakis[6-(3-thiopropionate)-6-deoxy]-?-CD, heptakis[(6-(thioethanoate)-6-deoxy]-?-CD and partially phosphorylated 6-(aminoethylphosphate)-6-deoxy-?-CD as triethylammonium salts, bpsp.NHEt3, bpse.NHEt3 and bphos.NHEt3, respectively, interacted with the positively charged picrate salt of heptakis[6-(guanidino)-6-deoxy]-?-CD, bguan.picrate, to form heterodimers as shown by NMR spectroscopic and microcalorimetric (ITC) titrations in solution....

  9. GW4064, an Agonist of Farnesoid X Receptor, Represses CYP3A4 Expression in Human Hepatocytes by Inducing Small Heterodimer Partner Expression

    OpenAIRE

    Zhang, Shu; Pan, Xian; Jeong, Hyunyoung

    2015-01-01

    Farnesoid X receptor (FXR) functions as a regulator of bile acid and lipid homeostasis and is recognized as a promising therapeutic target for metabolic diseases. The biologic function of FXR is mediated in part by a small heterodimer partner (SHP); ligand-activated FXR enhances SHP expression, and SHP in turn represses the activity of multiple transcription factors. This study aimed to investigate the effect of FXR activation on expression of the major drug-metabolizing enzyme CYP3A4. The ef...

  10. Validating Internal Control Genes for the Accurate Normalization of qPCR Expression Analysis of the Novel Model Plant Setaria viridis.

    Directory of Open Access Journals (Sweden)

    Julia Lambret-Frotté

    Full Text Available Employing reference genes to normalize the data generated with quantitative PCR (qPCR can increase the accuracy and reliability of this method. Previous results have shown that no single housekeeping gene can be universally applied to all experiments. Thus, the identification of a suitable reference gene represents a critical step of any qPCR analysis. Setaria viridis has recently been proposed as a model system for the study of Panicoid grasses, a crop family of major agronomic importance. Therefore, this paper aims to identify suitable S. viridis reference genes that can enhance the analysis of gene expression in this novel model plant. The first aim of this study was the identification of a suitable RNA extraction method that could retrieve a high quality and yield of RNA. After this, two distinct algorithms were used to assess the gene expression of fifteen different candidate genes in eighteen different samples, which were divided into two major datasets, the developmental and the leaf gradient. The best-ranked pair of reference genes from the developmental dataset included genes that encoded a phosphoglucomutase and a folylpolyglutamate synthase; genes that encoded a cullin and the same phosphoglucomutase as above were the most stable genes in the leaf gradient dataset. Additionally, the expression pattern of two target genes, a SvAP3/PI MADS-box transcription factor and the carbon-fixation enzyme PEPC, were assessed to illustrate the reliability of the chosen reference genes. This study has shown that novel reference genes may perform better than traditional housekeeping genes, a phenomenon which has been previously reported. These results illustrate the importance of carefully validating reference gene candidates for each experimental set before employing them as universal standards. Additionally, the robustness of the expression of the target genes may increase the utility of S. viridis as a model for Panicoid grasses.

  11. Farnesoid X Receptor Agonist Represses Cytochrome P450 2D6 Expression by Upregulating Small Heterodimer Partner.

    Science.gov (United States)

    Pan, Xian; Lee, Yoon-Kwang; Jeong, Hyunyoung

    2015-07-01

    Cytochrome P450 2D6 (CYP2D6) is a major drug-metabolizing enzyme responsible for eliminating approximately 20% of marketed drugs. Studies have shown that differential transcriptional regulation of CYP2D6 may contribute to large interindividual variability in CYP2D6-mediated drug metabolism. However, the factors governing CYP2D6 transcription are largely unknown. We previously demonstrated small heterodimer partner (SHP) as a novel transcriptional repressor of CYP2D6 expression. SHP is a representative target gene of the farnesoid X receptor (FXR). The objective of this study is to investigate whether an agonist of FXR, 3-(2,6-dichlorophenyl)-4-(3'-carboxy-2-chlorostilben-4-yl)oxymethyl-5-isopropylisoxazole (GW4064), alters CYP2D6 expression and activity. In CYP2D6-humanized transgenic mice, GW4064 decreased hepatic CYP2D6 expression and activity (by 2-fold) while increasing SHP expression (by 2-fold) and SHP recruitment to the CYP2D6 promoter. CYP2D6 repression by GW4064 was abrogated in Shp(-/-);CYP2D6 mice, indicating a critical role of SHP in CYP2D6 regulation by GW4064. Also, GW4064 decreased CYP2D6 expression (by 2-fold) in primary human hepatocytes, suggesting that the results obtained in CYP2D6-humanized transgenic mice can be translated to humans. This proof of concept study provides evidence for CYP2D6 regulation by an inducer of SHP expression, namely, the FXR agonist GW4064. PMID:25926433

  12. Natural product Celastrol destabilizes tubulin heterodimer and facilitates mitotic cell death triggered by microtubule-targeting anti-cancer drugs.

    Directory of Open Access Journals (Sweden)

    Hakryul Jo

    Full Text Available BACKGROUND: Microtubule drugs are effective anti-cancer agents, primarily due to their ability to induce mitotic arrest and subsequent cell death. However, some cancer cells are intrinsically resistant or acquire a resistance. Lack of apoptosis following mitotic arrest is thought to contribute to drug resistance that limits the efficacy of the microtubule-targeting anti-cancer drugs. Genetic or pharmacological agents that selectively facilitate the apoptosis of mitotic arrested cells present opportunities to strengthen the therapeutic efficacy. METHODOLOGY AND PRINCIPAL FINDINGS: We report a natural product Celastrol targets tubulin and facilitates mitotic cell death caused by microtubule drugs. First, in a small molecule screening effort, we identify Celastrol as an inhibitor of neutrophil chemotaxis. Subsequent time-lapse imaging analyses reveal that inhibition of microtubule-mediated cellular processes, including cell migration and mitotic chromosome alignment, is the earliest events affected by Celastrol. Disorganization, not depolymerization, of mitotic spindles appears responsible for mitotic defects. Celastrol directly affects the biochemical properties of tubulin heterodimer in vitro and reduces its protein level in vivo. At the cellular level, Celastrol induces a synergistic apoptosis when combined with conventional microtubule-targeting drugs and manifests an efficacy toward Taxol-resistant cancer cells. Finally, by time-lapse imaging and tracking of microtubule drug-treated cells, we show that Celastrol preferentially induces apoptosis of mitotic arrested cells in a caspase-dependent manner. This selective effect is not due to inhibition of general cell survival pathways or mitotic kinases that have been shown to enhance microtubule drug-induced cell death. CONCLUSIONS AND SIGNIFICANCE: We provide evidence for new cellular pathways that, when perturbed, selectively induce the apoptosis of mitotic arrested cancer cells, identifying a

  13. Repression of the nuclear receptor small heterodimer partner by steatotic drugs and in advanced nonalcoholic fatty liver disease.

    Science.gov (United States)

    Benet, Marta; Guzmán, Carla; Pisonero-Vaquero, Sandra; García-Mediavilla, M Victoria; Sánchez-Campos, Sonia; Martínez-Chantar, M Luz; Donato, M Teresa; Castell, José Vicente; Jover, Ramiro

    2015-04-01

    The small heterodimer partner (SHP) (NR0B2) is an atypical nuclear receptor that lacks a DNA-binding domain. It interacts with and inhibits many transcription factors, affecting key metabolic processes, including bile acid, cholesterol, fatty acid, and drug metabolism. Our aim was to determine the influence of steatotic drugs and nonalcoholic fatty liver disease (NAFLD) on SHP expression and investigate the potential mechanisms. SHP was found to be repressed by steatotic drugs (valproate, doxycycline, tetracycline, and cyclosporin A) in cultured hepatic cells and the livers of different animal models of NAFLD: iatrogenic (tetracycline-treated rats), genetic (glycine N-methyltransferase-deficient mice), and nutritional (mice fed a methionine- and choline-deficient diet). Among the different transcription factors investigated, CCAAT-enhancer-binding protein α (C/EBPα) showed the strongest dominant-repressive effect on SHP expression in HepG2 and human hepatocytes. Reporter assays revealed that the inhibitory effect of C/EBPα and steatotic drugs colocalize between -340 and -509 base pair of the SHP promoter, and mutation of a predicted C/EBPα response element at -473 base pair abolished SHP repression by both C/EBPα and drugs. Moreover, inhibition of major stress signaling pathways demonstrated that the mitogen-activated protein kinase kinase 1/2 pathway activates, while the phosphatidylinositol 3 kinase pathway represses SHP in a C/EBP-dependent manner. We conclude that SHP is downregulated by several steatotic drugs and in advanced NAFLD. These conditions can activate signals that target C/EBPα and consequently repress SHP, thus favoring the progression and severity of NAFLD. PMID:25576488

  14. Crystal structure of the disintegrin heterodimer from saw-scaled viper (Echis carinatus) at 1.9 A resolution.

    Science.gov (United States)

    Bilgrami, Sameeta; Yadav, Savita; Kaur, Punit; Sharma, Sujata; Perbandt, Markus; Betzel, Christian; Singh, Tej P

    2005-08-23

    Disintegrins constitute a family of potent polypeptide inhibitors of integrins. Integrins are transmembrane heterodimeric molecules involved in cell-cell and cell-extracellular matrix interactions. They are involved in many diseases such as cancer and thrombosis. Thus, disintegrins have a great potential as anticancer and antithrombotic agents. A novel heterodimeric disintegrin was isolated from the venom of saw-scaled viper (Echis carinatus) and was crystallized. The crystals diffracted to 1.9 A resolution and belonged to space group P4(3)2(1)2. The data indicated the presence of a pseudosymmetry. The structure was solved by applying origin shifts to the disintegrin homodimer schistatin solved in space group I4(1)22 with similar cell dimensions. The structure refined to the final R(cryst)/R(free) factors of 0.213/0.253. The notable differences are observed between the loops, (Gln39-Asp48) containing the important Arg42-Gly43-Asp44, of the present heterodimer and schistatin. These differences are presumably due to the presence of two glycines at positions 43 and 46 that allow the molecule to adopt variable conformations. A comparative analysis of the surface-charge distributions of various disintegrins showed that the charge distribution on monomeric disintegrins occurred uniformly over the whole surface of the molecule, while in the dimeric disintegrins, the charge is distributed only on one face. Such a feature may be important in the binding of two integrins to a single dimeric disintegrin. The phylogenetic analysis developed on the basis of amino acid sequence and three-dimensional structures indicates that the protein diversification and evolution presumably took place from the medium disintegrins and both the dimeric and short disintegrins evolved from them. PMID:16101289

  15. 绿色杜氏藻转录组分析%Transcriptome analysis ofDunaliella viridis

    Institute of Scientific and Technical Information of China (English)

    朱帅旗; 龚一富; 杭雨晴; 刘浩; 王何瑜

    2015-01-01

    In order to understand the gene information, function, haloduric pathway (glycerolipid metabolism) and related key genes forDunaliella viridis, we used Illumina HiSeqTM 2000 high-throughput sequencing technology to sequence its transcriptome. Trinity soft was used to assemble the data to form transcripts. Based on the Clusters of Orthologous Groups (COG), Gene Ontology (GO ) and Kyoto Encyclopedia of Genes and Genomes (KEGG ) data-bases, we carried out functional annotation and classification, pathway annotation, and the opening reading fragment (ORF) sequence prediction of transcripts. The key genes in the glycerolipid metabolism were analyzed. The results suggested that 81 593 transcripts were found, and 77 117 ORF sequences were predicted, accounting for 94.50% of all transcripts. COG classification results showed that 16 569 transcripts were assigned to 24 categories. GO classifica-tion annotated 76 436 transcripts. The number of transcripts for biologcial processes was 30 678, accounting for 40.14% of all transcripts. KEGG pathway analysis showed that 26 428 transcripts were annotated to 317 pathways, and 131 pathways were related to metabolism, accounting for 41.32% of all annotated pathways. Only one transcript was an-notated as coding the key enzyme dihydroxyacetone kinase involved in the glycerolipid pathway. This enzyme could be related to glycerol biosynthesis under salt stress. This study further improved the gene information and laid the foun-dation of metabolic pathway research forDunaliella viridis.%为了深入了解绿色杜氏藻(Dunaliella viridis)基因信息及功能、耐盐相关通路(甘油脂代谢)及关键酶,本文首次通过Illumina HiSeqTM 2000高通量测序技术对绿色杜氏藻转录组进行测序,利用Trinity软件将数据组装形成转录本,对所有转录本进行COG(Clusters of Orthologous Groups)、GO(Gene Ontology)和KEGG(Kyoto En-cyclopedia of Genes and Genomes)分类和功能注释、Pathway注

  16. Correlation analysis of symmetry breaking in the surface nanostructure ordering: case study of the ventral scale of the snake Morelia viridis

    Science.gov (United States)

    Kovalev, A.; Filippov, A.; Gorb, S. N.

    2016-03-01

    In contrast to the majority of inorganic or artificial materials, there is no ideal long-range ordering of structures on the surface in biological systems. Local symmetry of the ordering on biological surfaces is also often broken. In the present paper, the particular symmetry violation was analyzed for dimple-like nano-pattern on the belly scales of the skin of the pythonid snake Morelia viridis using correlation analysis and statistics of the distances between individual nanostructures. The results of the analysis performed on M. viridis were compared with a well-studied nano-nipple pattern on the eye of the sphingid moth Manduca sexta, used as a reference. The analysis revealed non-random, but very specific symmetry violation. In the case of the moth eye, the nano-nipple arrangement forms a set of domains, while in the case of the snake skin, the nano-dimples arrangement resembles an ordering of particles (molecules) in amorphous (glass) state. The function of the nano-dimples arrangement may be to provide both friction and strength isotropy of the skin. A simple model is suggested, which provides the results almost perfectly coinciding with the experimental ones. Possible mechanisms of the appearance of the above nano-formations are discussed.

  17. Extracts from Cladiella australis, Clavularia viridis and Klyxum simplex (Soft Corals are Capable of Inhibiting the Growth of Human Oral Squamous Cell Carcinoma Cells

    Directory of Open Access Journals (Sweden)

    Guey-Horng Wang

    2008-11-01

    Full Text Available Many biomedical products have already been obtained from marine organisms. In order to search more therapeutic drugs against cancer, this study demonstrates the cytotoxicity effects of Cladiella australis, Clavularia viridis and Klyxum simplex extractson human oral squamous cell carcinoma (SCC4, SCC9 and SCC25 cells using cell adhesion and cell viability assay. The morphological alterations in SCCs cells after treatment with three extracts, such as typical nuclear condensation, nuclear fragmentation and apoptotic bodies of cells were demonstrated by Hoechst stain. Flow cytometry indicated that three extracts sensitized SCC25 cells in the G0/G1 and S-G2/M phases with a concomitant significantly increased sub-G1 fraction, indicating cell death by apoptosis. This apoptosis process was accompanied by activation of caspase-3 expression after SCC25 cells were treated with three extracts. Thereby, it is possible that extracts of C. australis, C. viridis and K. simplex cause apoptosis of SCCs and warrant further research investigating the possible anti-oral cancer compounds in these soft corals.

  18. Is Hybridization a Source of Adaptive Venom Variation in Rattlesnakes? A Test, Using a Crotalus scutulatus × viridis Hybrid Zone in Southwestern New Mexico

    Science.gov (United States)

    Zancolli, Giulia; Baker, Timothy G.; Barlow, Axel; Bradley, Rebecca K.; Calvete, Juan J.; Carter, Kimberley C.; de Jager, Kaylah; Owens, John Benjamin; Price, Jenny Forrester; Sanz, Libia; Scholes-Higham, Amy; Shier, Liam; Wood, Liam; Wüster, Catharine E.; Wüster, Wolfgang

    2016-01-01

    Venomous snakes often display extensive variation in venom composition both between and within species. However, the mechanisms underlying the distribution of different toxins and venom types among populations and taxa remain insufficiently known. Rattlesnakes (Crotalus, Sistrurus) display extreme inter- and intraspecific variation in venom composition, centered particularly on the presence or absence of presynaptically neurotoxic phospholipases A2 such as Mojave toxin (MTX). Interspecific hybridization has been invoked as a mechanism to explain the distribution of these toxins across rattlesnakes, with the implicit assumption that they are adaptively advantageous. Here, we test the potential of adaptive hybridization as a mechanism for venom evolution by assessing the distribution of genes encoding the acidic and basic subunits of Mojave toxin across a hybrid zone between MTX-positive Crotalus scutulatus and MTX-negative C. viridis in southwestern New Mexico, USA. Analyses of morphology, mitochondrial and single copy-nuclear genes document extensive admixture within a narrow hybrid zone. The genes encoding the two MTX subunits are strictly linked, and found in most hybrids and backcrossed individuals, but not in C. viridis away from the hybrid zone. Presence of the genes is invariably associated with presence of the corresponding toxin in the venom. We conclude that introgression of highly lethal neurotoxins through hybridization is not necessarily favored by natural selection in rattlesnakes, and that even extensive hybridization may not lead to introgression of these genes into another species. PMID:27322321

  19. Bioreduction of trivalent aurum to nano-crystalline gold particles by active and inactive cells and cell-free extract of Aspergillus oryzae var. viridis

    International Nuclear Information System (INIS)

    Bioreduction efficacy of both active (AB) and inactive (IB) cells/biomass of Aspergillus oryzae var. viridis and their respective cell-free extracts (ACE and ICE) to convert trivalent aurum to gold nanoparticles were tested in the present study. Strong plasmon resonance of gold nanoparticles was observed between 540 and 560 nm in the samples obtained from AB, IB, ACE and ICE. Transmission electron microscopy (TEM), field emission scanning electron microscopy (FE-SEM), energy dispersive X-ray (EDX) and X-ray diffraction (XRD) were performed to examine the formation of gold nanoparticles. Comparing all four forms of A. oryzae var. viridis, ICE showed high gold nanoparticle productivity. The nanoparticles formed were quite uniform in shape and ranged in size from 10 to 60 nm. In addition some triangle, pentagon and hexagon-shaped nanoplates with size range of 30-400 nm were also synthesized especially at lower pH. Organics from the inactive cells are believed to be responsible for reduction of trivalent aurum to nano-sized gold particles. Organic content of the ICE was found to be double the amount of ACE. High productivity of gold nanoparticles by metabolic-independent process opens up an interesting area of nanoparticle synthesis using waste fungal biomass from industries.

  20. Concentrations of heavy metals (Cu, Cd, Zn and Ni) and PAHs in Perna viridis collected from seaport and non-seaport waters in the Straits of Johore.

    Science.gov (United States)

    Yap, C K; Shahbazi, A; Zakaria, M P

    2012-12-01

    In this study, the ranges of pollutants found in the soft tissues of Perna viridis collected from Kg. Masai and Kg. Sg. Melayu, both located in the Straits of Johore, were 0.85-1.58 μg/g dry weight (dw) for Cd, 5.52-12.2 μg/g dw for Cu, 5.66-8.93 μg/g dw for Ni and 63.4-72.3 μg/g dw for Zn, and 36.4-244 ng/g dry weight for ∑PAHs. Significantly (p water of a seaport site at Kg. Masai than a non-seaport site at Kg. Sg. Melayu population. The ratios of low molecular weight/high molecular weight hydrocarbons (2.94-3.42) and fluoranthene/pyrene (0.43-0.45) in mussels from both sites indicated the origin of the PAHs to be mainly petrogenic. This study has demonstrated the utility of using the soft tissues of P. viridis as a biomonitor of PAH contamination and bioavailability in the coastal waters of Peninsular Malaysia. PMID:23052577

  1. Influence of elevated CO{sub 2} and nitrogen supply on the carbon assimilation performance and cell composition of the unicellular alga Dunaliella viridis

    Energy Technology Data Exchange (ETDEWEB)

    Gordillo, F.J.L.; Jimenez, C.; Figueroa, F.L.; Xavier Niell, F. [Univ. de Malaga, Dept. de Ecologia, Facultad de Ciencias, Malaga (Spain)

    2003-12-01

    The carbon assimilation efficiency and the internal composition of the chlorophyte Dunaliella viridis have been studied under conditions of current (0.035%) and enriched (1%) levels of CO{sub 2}, with and without N limitation (supplied as nitrate). Results show that both photosynthesis and growth rates are enhanced by high CO{sub 2}, but the strategy of acclimation also involves the light harvesting machinery and the nutritional metabolism in an N supply dependent manner. D. viridis carried out a qualitative rather than a quantitative acclimation of the light harvesting system leading to increased PSII quantum yields. Total internal C decreased as a consequence of either active growth or organic carbon release to the external medium. The latter process allowed photosynthetic electron transport to proceed at higher rates than under normal CO{sub 2} conditions, and maintained the internal C:N balance in a narrow range (under N sufficiency). N limitation generally prevented the effects of high CO{sub 2}, with some exceptions such as the photosynthetic O-2 evolution rate. (au)

  2. Double trouble for grasshopper molecular systematics: intra-individual heterogeneity of both mitochondrial 12S-valine-16S and nuclear internal transcribed spacer ribosomal DNA sequences in Hesperotettix viridis

    Science.gov (United States)

    Hesperotettix viridis grasshoppers (Orthoptera: Acrididae:Melanoplinae) exhibit intra-individual variation in both mitochondrial 12S-valine-16S and nuclear internal transcribed spacer (ITS) ribosomal DNA sequences. These findings violate core assumptions underlying DNA sequence data obtained via pol...

  3. Permanent Draft Genome Sequence of Frankia sp. Strain AvcI1, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Alnus viridis subsp. crispa Grown in Canada

    OpenAIRE

    Swanson, Erik; Oshone, Rediet; Simpson, Stephen; Morris, Krystalynne; Abebe-Akele, Feseha; Thomas, W Kelley; Tisa, Louis S.

    2015-01-01

    Frankia strain AvcI1, isolated from root nodules of Alnus viridis subsp. crispa, is a member of Frankia lineage Ia, which is able to reinfect plants of the Betulaceae and Myricaceae families. Here, we report a 7.7-Mbp draft genome sequence with a G+C content of 72.41% and 6,470 candidate protein-encoding genes.

  4. New Karyological and Morphometric Data on Poorly Known Bufo surdus and Bufo luristanicus in Comparison with Data of Diploid Green Toads of the Bufo viridis Complex from South of Iran

    Institute of Scientific and Technical Information of China (English)

    Fatemeh FAKHARZAEH; Jamshid DARVISH; Haji Gholi KAMI; Fereshteh GHASEMZADEH; Eskandar RASTEGAR-POUYANI

    2014-01-01

    Previous studies on the Bufo viridis complex, which is distributed broadly across Iran, are incomplete and restricted to a few regions or a few samples. In this paper a new detailed study on the B. viridis complex in southern of Iran (from West to East) is presented. The analysis of 18 morphometric characters with univariate and multivariate methods reveals significant differences between three members of the B. viridis complex namely B. variabilis, B. luristanicus, and B. surdus distributed in southern part of Iran. Our result help to resolve an old taxonomic problem about B. surdus subgroup (taxa closely related to B. surdus) conifrming that B. luristanicus and B. surdus are distinct species. Moreover, for the ifrst time we report and describe karyotype details of B. luristanicus and B. surdus which conifrmed that they are diploid. Karyological studies demonstrate that all toads from three mentioned species have 2n=22 chromosomes. These chromosomes are arranged into two groups. First group has six large chromosomes and the second group is composed of five small chromosomes. These chromosomes are metacentric or submetacentric. The number of submetacentric chromosomes is different in three mentioned species of B. viridis complex. Neither sexual heteromorphism, nor secondary constriction was observed in any pairs of chromosomes.

  5. Endoplasmic Reticulum Stress-Induced Activation of Activating Transcription Factor 6 Decreases Insulin Gene Expression via Up-Regulation of Orphan Nuclear Receptor Small Heterodimer Partner

    OpenAIRE

    Seo, Hye-Young; Kim, Yong Deuk; Lee, Kyeong-Min; Min, Ae-Kyung; Kim, Mi-Kyung; Kim, Hye-Soon; Won, Kyu-Chang; Park, Joong-Yeol; Lee, Ki-Up; Choi, Hueng-Sik; Park, Keun-Gyu; Lee, In-Kyu

    2008-01-01

    The highly developed endoplasmic reticulum (ER) structure of pancreatic β-cells is a key factor in β-cell function. Here we examined whether ER stress-induced activation of activating transcription factor (ATF)-6 impairs insulin gene expression via up-regulation of the orphan nuclear receptor small heterodimer partner (SHP; NR0B2), which has been shown to play a role in β-cell dysfunction. We examined whether ER stress decreases insulin gene expression, and this process is mediated by ATF6. A...

  6. A physiological study of integument secretions in the marine polychaete Eulalia viridis and their potential biotechnological value.

    Directory of Open Access Journals (Sweden)

    Ana Patrícia Rodrigo

    2014-06-01

    Full Text Available There is a growing interest in marine bioproducts, especially in those with life improving potential to humans. Marine invertebrates, in particular, possess particular interest due to their high diversity, abundance and ecological importance. However, the physiology of such a wide and diverse group of organisms is far from understood. Marine annelids, in particular (Class Polychaeta, are of especial interest, in large part owing to their ecological representativity and easy handling. Still only few studies have been focusing on physiological traits of the polychaeta that may relate to the production of bioproducts of potential biotechnological applications. The secretion of substances by polychaetes is acknowledged to relate primarily with locomotion and feeding, but also thought to have an important role in egg protection, prevention against infection and even as defence mechanisms against possible predators. As such, the present work aims at identifying, isolating and analysing the nature of integumentary secretions of E. viridis, a common intertidal worm of rocky shores. Histological analyses revealed a more complex microanatomy of the skin than it could be anticipated. Several cell types were identified in the integument, each bearing different functions such as structural support, pigmentation and sensorial, to which is added secretion as one of the most important roles. Due to the great complexity of the integument, the identification of the chemical nature of all types of secretions is particularly challenging. However, more detailed histochemical analyses and electron microscopy enabled the identification of different secretory cells and their chemical nature and role. The analyses was complemented by protein isolation from mucous and homogenates trough SDS-PAGE. Extracts revealed, for instance, that peptidic substances produced by the skin are potentially biocidal, as assessed through the Microtox Assay. Overall, the results enhance the

  7. Modification of trace metal accumulation in the green mussel Perna viridis by exposure to Ag, Cu, and Zn

    International Nuclear Information System (INIS)

    To examine the Cd, Hg, Ag, and Zn accumulation in the green mussel Perna viridis affected by previous exposure to Cu, Ag, or Zn, the dietary metal assimilation efficiency (AE) and the uptake rate from the dissolved phase were quantified. The mussel's filtration rate, metallothionein (MT) concentration, and metal tissue burden as well as the metal subcellular partitioning were also determined to illustrate the potential mechanisms underlying the influences caused by one metal pre-exposure on the bioaccumulation of the other metals. The green mussels were pre-exposed to Cu, Ag, or Zn for different periods (1-5 weeks) and the bioaccumulation of Cd, Hg, Ag, and Zn were concurrently determined. Pre-exposure to the three metals did not result in any significant increase in MT concentration in the green mussels. Ag concentration in the insoluble fraction increased with increasing Ag exposure period and Ag ambient concentration. Our data indicated that Cd assimilation were not influenced by the mussel's pre-exposure to the three metals (Cu, Ag, and Zn), but its dissolved uptake was depressed by Ag and Zn exposure. Although Hg assimilation from food was not affected by the metal pre-exposure, its influx rate from solution was generally inhibited by the exposure to Cu, Ag, and Zn. Ag bioaccumulation was affected the most obviously, in which its AE increased with increasing Ag tissue concentration, and its dissolved uptake decreased with increasing tissue concentrations of Ag and Cu. As an essential metal, Zn bioaccumulation remained relatively stable following the metal pre-exposure, suggesting the regulatory ability of Zn uptake in the mussels. Zn AE was not affected by metal pre-exposure, but its dissolved uptake was depressed by Ag and Zn pre-exposure. All these results indicated that the influences of one metal pre-exposure on the bioaccumulation of other metals were metal-specific due to the differential binding and toxicity of metals to the mussels. Such factors should

  8. Lipidic phase membrane protein serial femtosecond crystallography

    OpenAIRE

    Johansson, LC; Arnlund, D.; White, TA; Katona, G.; DePonte, DP; Weierstall, U.; Doak, RB; Shoeman, RL; Lomb, L; Malmerberg, E.; Davidsson, J; Nass, K.; Liang, MN; Andreasson, J.; Dell'Aquila, A.

    2012-01-01

    X-ray free electron laser (X-FEL)-based serial femtosecond crystallography is an emerging method with potential to rapidly advance the challenging field of membrane protein structural biology. Here we recorded interpretable diffraction data from micrometer-sized lipidic sponge phase crystals of the Blastochloris viridis photosynthetic reaction center delivered into an X-FEL beam using a sponge phase micro-jet.

  9. Mapping lipid and detergent molecules at the surface of membrane proteins.

    Science.gov (United States)

    Cogdell, Richard J; Gardiner, Alastair T; Roszak, Aleksander W; Stončius, Sigitas; Kočovský, Pavel; Isaacs, Neil W

    2011-06-01

    Electron-density maps for the crystal structures of membrane proteins often show features suggesting binding of lipids and/or detergent molecules on the hydrophobic surface, but usually it is difficult to identify the bound molecules. In our studies, heavy-atom-labelled phospholipids and detergents have been used to unequivocally identify these binding sites at the surfaces of test membrane proteins, the reaction centres from Rhodobacter sphaeroides and Blastochloris viridis. The generality of this method is discussed in the present article.

  10. Mercury depuration effectiveness on green mussel (Perna viridis L.) and blood cockle (Anadara granosa L.) from Jakarta Bay using ozone, chitosan and hydrodynamic technique

    Science.gov (United States)

    Widiah Ningrum, Endar; Duryadi Solihin, Dedy; Butet, Nurlisa A.

    2016-01-01

    Depuration has been used to eliminate microorganism and toxic chemical contaminants in bivalve. However, scientific research still needs to discover the effectiveness of depuration. This research aimed at assessing the best depuration effectiveness in decreasing mercury (Hg) concentration level in two species of bivalves, green mussel (Perna viridis L.) and blood cockle (Anadara granosa L.). The depuration treatments applied 1.5 ppm ozon, 0.5 ppm chitosan, hydrodynamic technique (1.3 m/s), combination between hydrodynamic-ozon, hydrodynamic-chitosan and ozon-chitosan. The experiment were conducted in mini aquaria for 60 minutes. Mercury concentration was measured in 10 g dry weight of green mussel (4.05±0.020 ppm) and blood cockle (3.27 ± 0.666 ppm). The result showed that mercury depuration were highly effective by combination of ozone-chitosan in green mussel (96.51%) and 1.5 ppm ozone in blood cockle (87.06%).

  11. BIOMONITORING OF AMBIENT CONCENTRATIONS OF CADMIUM,COPPER, LEAD AND ZINC IN THE COASTAL WETLAND WATER BY USING GILLS OF THE GREEN- LIPPED MUSSEL PERNA VIRIDIS

    Institute of Scientific and Technical Information of China (English)

    Chee Kong Yap; Ahmad Ismail; Abdul Rahim Ismail; Soon Guan Tan

    2006-01-01

    The distribution and concentrations of Cd, Cu, Pb and Zn were determined in the gills and remaining soft tissues of Perna viridis collected from 12 geographical sites ( 10 from the west and 2 from the east coastal waters) of Peninsular Malaysia. All samples showed that the levels of Cd, Pb and Zn were generally higher in the gill than those in the remaining soft tissues. These results could be due to the fact that gills are the first organ of metal accumulation and larger surface area with mucus sheets in the organ. Since the mussel gill is a better accumulator of Cd, Pb and Zn of ambient seawater than remaining soft tissue, it is a potential indicator of ambient levels of dissolved metals in the ambient seawater. However, further validations based on laboratory conditions are needed.

  12. Habitat degradation correlates with tolerance to climate-change related stressors in the green mussel Perna viridis from West Java, Indonesia.

    Science.gov (United States)

    Wendling, Carolin Charlotte; Huhn, Mareike; Ayu, Nurina; Bachtiar, Ramadian; von Juterzenka, Karen; Lenz, Mark

    2013-06-15

    It is unclear whether habitat degradation correlates with tolerance of marine invertebrates to abiotic stress. We therefore tested whether resistance to climate change-related stressors differs between populations of the green mussel Perna viridis from a heavily impacted and a mostly pristine site in West Java, Indonesia. In laboratory experiments, we compared their oxygen consumption and mortality under lowered salinity (-13 and -18 units, both responses), hypoxia (0.5 mg/l, mortality only) and thermal stress (+7 °C, mortality only). Mussels from the eutrophied and polluted Jakarta Bay showed a significantly smaller deviation from their normal oxygen consumption and higher survival rates when stressed than their conspecifics from the unaffected Lada Bay. This shows that human induced habitat degradation correlates with mussel tolerance to environmental stress. We discuss possible mechanisms - e.g. the selection of tolerant genotypes or habitat-specific differences in the nutritional status of the mussels - that could explain our observation. PMID:23660441

  13. Habitat degradation correlates with tolerance to climate-change related stressors in the green mussel Perna viridis from West Java, Indonesia.

    Science.gov (United States)

    Wendling, Carolin Charlotte; Huhn, Mareike; Ayu, Nurina; Bachtiar, Ramadian; von Juterzenka, Karen; Lenz, Mark

    2013-06-15

    It is unclear whether habitat degradation correlates with tolerance of marine invertebrates to abiotic stress. We therefore tested whether resistance to climate change-related stressors differs between populations of the green mussel Perna viridis from a heavily impacted and a mostly pristine site in West Java, Indonesia. In laboratory experiments, we compared their oxygen consumption and mortality under lowered salinity (-13 and -18 units, both responses), hypoxia (0.5 mg/l, mortality only) and thermal stress (+7 °C, mortality only). Mussels from the eutrophied and polluted Jakarta Bay showed a significantly smaller deviation from their normal oxygen consumption and higher survival rates when stressed than their conspecifics from the unaffected Lada Bay. This shows that human induced habitat degradation correlates with mussel tolerance to environmental stress. We discuss possible mechanisms - e.g. the selection of tolerant genotypes or habitat-specific differences in the nutritional status of the mussels - that could explain our observation.

  14. PKA-activated ApAF–ApC/EBP heterodimer is a key downstream effector of ApCREB and is necessary and sufficient for the consolidation of long-term facilitation

    OpenAIRE

    LEE, Jin-A; Lee, Sue-Hyun; Lee, Changhoon; Chang, Deok-Jin; Lee, Yong; Kim, Hyoung; Cheang, Ye-Hwang; Ko, Hyoung-Gon; Lee, Yong-Seok; Jun, Heejung; Bartsch, Dusan; Kandel, Eric R.; Kaang, Bong-Kiun

    2006-01-01

    Long-term memory requires transcriptional regulation by a combination of positive and negative transcription factors. Aplysia activating factor (ApAF) is known to be a positive transcription factor that forms heterodimers with ApC/EBP and ApCREB2. How these heterodimers are regulated and how they participate in the consolidation of long-term facilitation (LTF) has not, however, been characterized. We found that the functional activation of ApAF required phosphorylation of ApAF by PKA on Ser-2...

  15. Toxic effects of male Perna viridis gonad exposed to BaP, DDT and their mixture: A metabolomic and proteomic study of the underlying mechanism.

    Science.gov (United States)

    Song, Qinqin; Zheng, Pengfei; Qiu, Liguo; Jiang, Xiu; Zhao, Hongwei; Zhou, Hailong; Han, Qian; Diao, Xiaoping

    2016-01-01

    Benzo(a)pyrene and dichlorodiphenyltrichloroethane are typical persistent organic pollutants, and also the widespread environmental estrogens with known toxicity towards green mussels Perna viridis. In this study, the toxicological effects of BaP and DDT and their mixture were assessed in green mussel gonads using proteomic and metabolomic approaches. Metabolomics by NMR spectroscopy revealed that BaP did not show obvious metabolite changes in the gonad of male green mussel. DDT mainly caused some disturbance of osmotic regulation and energy metabolism by changing BCAAs, alanine, threonine, arginine, etc., unknown metabolite (3.53 ppm), glycine, homarine and ATP at different levels. However, the mixture of BaP and DDT mainly caused some disturbance in osmotic regulation and energy metabolism by differentially altering branched chain amino acids, glutamate, alanine, arginine, unknown metabolite (3.53 ppm), glycine, 4-aminobutyrate, dimethylglycine, homarine and ATP. The results suggest that DDT alone may cause most of metabolites changes in the mixture exposed male mussel gonad, and the results also show that the male P. viridis gonad was more sensitive to DDT than BaP exposures. Proteomic study showed that BaP, DDT and their mixture may have different modes of action. Proteomic responses revealed that BaP induced signal transduction, oxidative stress, spermatogenesis, etc. in the male green mussel gonad; whereas DDT exposure altered proteins that were associated with signal transduction, oxidative stress, cytoskeleton and cell structure, cellular organization, energy metabolism, etc. However, the mixture of BaP and DDT affected proteins related to cytoskeleton and cell structure, oxidative stress, cellular organization, etc. This research demonstrated that metabolomic and proteomic approaches could better elucidate the underlying mechanism of environmental pollutants gonad toxicity.

  16. Characterization of a glutamine synthetase gene DvGS2 from Dunaliella viridis and biochemical identification of DvGS2-transgenic Arabidopsis thaliana.

    Science.gov (United States)

    Zhu, Chenguang; Fan, Qianlan; Wang, Wei; Shen, Chunlei; Meng, Xiangzong; Tang, Yuanping; Mei, Bing; Xu, Zhengkai; Song, Rentao

    2014-02-25

    The salt-tolerant green alga Dunaliella has remarkable capability to survive in some extreme environments such as nitrogen starvation, which makes Dunaliella be a proper model for mining novel genes on nitrogen uptake or assimilation. In this study, a glutamine synthetase (GS) gene DvGS2 with amino acid identity of 72% to other homologous GS proteins, was isolated and characterized from Dunaliella viridis. Phylogenetic comparison with other GSs revealed that DvGS2 occupied an independent phylogenetic position. Expressional analysis in D. viridis cells under nitrogen starvation confirmed that DvGS2 increased its mRNA level in 12h. Subcellular localization study and functional analysis in a GS-deficient Escherichia coli mutant proved that DvGS2 was a chloroplastic and functional GS enzyme. In order to investigate the potential application of DvGS2 in higher plants, the transgenic studies of DvGS2 in Arabidopsis thaliana were carried out. Results showed that the transgenic lines expressed the DvGS2 gene and demonstrated obviously enhanced root length (29%), fresh weight (40%-48% at two concentrations of nitrate supplies), stem length (21%), leaf size (39%) and silique number (44%) in contrast with the wild-type Arabidopsis. Furthermore, the transgenic lines had higher total nitrogen content (35%-43%), total GS activity (39%-45%) and soluble protein concentration (23%-24%) than the wild type. These results indicated that the overexpression of DvGS2 in A. thaliana resulted in higher biomass and the improvement of the host's nitrogen use efficiency. PMID:24334123

  17. A Single Transcriptome of a Green Toad (Bufo viridis) Yields Candidate Genes for Sex Determination and -Differentiation and Non-Anonymous Population Genetic Markers.

    Science.gov (United States)

    Gerchen, Jörn F; Reichert, Samuel J; Röhr, Johannes T; Dieterich, Christoph; Kloas, Werner; Stöck, Matthias

    2016-01-01

    Large genome size, including immense repetitive and non-coding fractions, still present challenges for capacity, bioinformatics and thus affordability of whole genome sequencing in most amphibians. Here, we test the performance of a single transcriptome to understand whether it can provide a cost-efficient resource for species with large unknown genomes. Using RNA from six different tissues from a single Palearctic green toad (Bufo viridis) specimen and Hiseq2000, we obtained 22,5 Mio reads and publish >100,000 unigene sequences. To evaluate efficacy and quality, we first use this data to identify green toad specific candidate genes, known from other vertebrates for their role in sex determination and differentiation. Of a list of 37 genes, the transcriptome yielded 32 (87%), many of which providing the first such data for this non-model anuran species. However, for many of these genes, only fragments could be retrieved. In order to allow also applications to population genetics, we further used the transcriptome for the targeted development of 21 non-anonymous microsatellites and tested them in genetic families and backcrosses. Eleven markers were specifically developed to be located on the B. viridis sex chromosomes; for eight markers we can indeed demonstrate sex-specific transmission in genetic families. Depending on phylogenetic distance, several markers, which are sex-linked in green toads, show high cross-amplification success across the anuran phylogeny, involving nine systematic anuran families. Our data support the view that single transcriptome sequencing (based on multiple tissues) provides a reliable genomic resource and cost-efficient method for non-model amphibian species with large genome size and, despite limitations, should be considered as long as genome sequencing remains unaffordable for most species. PMID:27232626

  18. Synthesis and anti-HIV activity of some [Nucleoside Reverse Transcriptase Inhibitor]-C5'-linker-[Integrase Inhibitor] heterodimers as inhibitors of HIV replication.

    Science.gov (United States)

    Sugeac, Elena; Fossey, Christine; Ladurée, Daniel; Schmidt, Sylvie; Laumond, Geraldine; Aubertin, Anne-Marie

    2004-12-01

    Selected for their expected ability to inhibit HIV replication, a series of eight heterodimers containing a Nucleoside Reverse Transcriptase Inhibitor (NRTI) and an Integrase Inhibitor (INI), bound by a linker, were designed and synthesized. For the NRTIs, d4U, d2U and d4T were chosen. For the INIs, 4-[1-(4-fluorobenzyl)-1H-pyrrol-2-yl]-2,4-dioxobutyric acid (6) and 4-(3,5-dibenzyloxyphenyl)-2,4-dioxobutyric acid (9) (belonging to the beta-diketo acids class) were chosen. The conjugation of the two different inhibitors (NRTI and INI) was performed using an amino acid (glycine or beta-alanine) as a cleavable linker. PMID:15662954

  19. Synthesis and anti-HIV activity of some [Nucleoside Reverse Transcriptase Inhibitor]-C5'-linker-[Integrase Inhibitor] heterodimers as inhibitors of HIV replication.

    Science.gov (United States)

    Sugeac, Elena; Fossey, Christine; Ladurée, Daniel; Schmidt, Sylvie; Laumond, Geraldine; Aubertin, Anne-Marie

    2004-12-01

    Selected for their expected ability to inhibit HIV replication, a series of eight heterodimers containing a Nucleoside Reverse Transcriptase Inhibitor (NRTI) and an Integrase Inhibitor (INI), bound by a linker, were designed and synthesized. For the NRTIs, d4U, d2U and d4T were chosen. For the INIs, 4-[1-(4-fluorobenzyl)-1H-pyrrol-2-yl]-2,4-dioxobutyric acid (6) and 4-(3,5-dibenzyloxyphenyl)-2,4-dioxobutyric acid (9) (belonging to the beta-diketo acids class) were chosen. The conjugation of the two different inhibitors (NRTI and INI) was performed using an amino acid (glycine or beta-alanine) as a cleavable linker.

  20. Identification and characterization of a novel C20-elongase gene from the marine microalgae, Pavlova viridis, and its use for the reconstitution of two pathways of long-chain polyunsatured fatty acids biosynthesis in Saccharomyces cerevisiae.

    Science.gov (United States)

    Shi, Tonglei; Yu, Aiqun; Li, Ming; Zhang, Meng; Xing, Laijun; Li, Mingchun

    2013-08-01

    The marine microalga, Pavlova viridis, contains long-chain polyunsatured fatty acids including eicosapentaenoic acid (EPA, 20:5n-3) and docosapentaenoic acid (DPA, 22:5n-3). A full-length cDNA sequence, pvelo5, was isolated from P. viridis. From sequence alignment, the gene was homologous to fatty acyl elongases from other organisms. Heterologous expression of pvelo5 in Saccharomyces cerevisiae confirmed that it encoded a specific C20-elongase within the n-3 and n-6 pathways. Elongation activity was confined exclusively to EPA and arachidonic acid (20:4n-6). GC analysis indicated that pvelo5 could co-express with other genes for biosynthesis to reconstitute the Δ8 and Δ6 pathways. Real-time PCR results and fatty acid analysis demonstrated that long-chain polyunsatured fatty acids production by the Δ8 pathway might be more effective than that by the Δ6 pathway. PMID:23546943

  1. Substitution of specific cysteine residues in E1 glycoprotein of classical swine fever virus strain Brescia affects formation of E1-E2 heterodimers and alters virulence in swine

    Science.gov (United States)

    E1, along with E^rns and E2, is one of the three envelope glycoproteins of Classical Swine Fever Virus (CSFV). E1 and E2 are anchored to the virus envelope at their carboxyl termini and E^rns loosely associates with the viral envelope. In infected cells, E2 forms homodimers and heterodimers with E1,...

  2. Permanent Draft Genome Sequence of Frankia sp. Strain AvcI1, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Alnus viridis subsp. crispa Grown in Canada.

    Science.gov (United States)

    Swanson, Erik; Oshone, Rediet; Simpson, Stephen; Morris, Krystalynne; Abebe-Akele, Feseha; Thomas, W Kelley; Tisa, Louis S

    2015-01-01

    Frankia strain AvcI1, isolated from root nodules of Alnus viridis subsp. crispa, is a member of Frankia lineage Ia, which is able to reinfect plants of the Betulaceae and Myricaceae families. Here, we report a 7.7-Mbp draft genome sequence with a G+C content of 72.41% and 6,470 candidate protein-encoding genes. PMID:26722013

  3. 狗尾草果实中总鞣质的提取和含量测定%EXTRACTION AND DETERMINATION OF TOTAL TANNIN FROM SETARIA VIRIDIS( L. ) BEAUV.RIPE FRUITS

    Institute of Scientific and Technical Information of China (English)

    张爱武; 罗素琴; 刘乐乐; 吴宁远; 王来兵; 于姝燕; 张国萍

    2012-01-01

    Objective: To extract total tannin from Setaria viridis (L. ) Beaux, ripe fruits and deter mination the content of total tannin. Methods: It was adopted the optimum ultrasonic extraction tech nique to extract the total tannin from Setaira viridis (L. ) Beauv. Ripe fruits. Compleximetry was applied to determine the content of total tannin. Results: The content of total tannin was 0.4650%. Conclu sion :Ultrasonic extraction technique is simple and rapid,Content determination of complexometric titra tion method is safe and reliable. The method was available for extraction and content determination of total tannin from Setaria viridis (L. ) Beauv. Ripe fruits.%目的:从狗尾草果实中提取总鞣质并测定其含量.方法:采用超声波法提取狗尾革果实的总鞣质,用络合滴定法测定其总鞣质的含量.结果:狗尾草果实总鞣质的含量为0.4650%.结论:采用超声法提取操作程序简便、迅速,络合滴定法含量测定方法安全可靠,准确度和精密度较高,可用于狗尾草果实中总鞣质的提取及含量测定.

  4. [Lipid and fatty acid profile of Perna viridis, green mussel (Mollusca: Bivalvia) in different areas of the Eastern Venezuela and the West Coast of Trinidad].

    Science.gov (United States)

    Koftayan, Tamar; Milano, Jahiro; D'Armas, Haydelba; Salazar, Gabriel

    2011-03-01

    The species Perna viridis is a highly consumed species, which fast growth makes it an interesting aquaculture alternative for Venezuelan and Trinidad coasts. With the aim to contribute with its nutritional value information, this study analyzed lipid and fatty acid contents from samples taken in five locations from Eastern Venezuela and three from Trinidad West Coast. Total lipids were extracted and quantified, from a pooled sample of 100 organisms per location, by standard gravimetric methods, and their identification and quantification was done by TLC/FID (Iatroscan system). Furthermore, the esterified fatty acids of total lipid, phospholipids and triacylglycerols were identified and quantified by gas chromatography. Eastern Venezuela samples from Los Cedros, La Brea and Chaguaramas showed the highest total lipid values of 7.92, 7.74 and 7.53, respectively, and the minimum values were obtained for La Restinga (6.08%). Among lipid composition, Chacopata samples showed the lowest phospholipid concentration (48.86%) and the maximum values for cholesterol (38.87%) and triacylglycerols (12.26%); besides, La Esmeralda and Rio Caribe samples exhibited maximum phospholipids (88.71 and 84.93 respectively) and minimum cholesterol (6.50 and 4.42%) concentrations. Saturated fatty acids represented between 15.04% and 65.55% within total lipid extracts, with maximum and minimum values for La Esmeralda and Chacopata, respectively. Polyunsaturated results resulted between 7.80 and 37.18%, with higher values in La Brea and lower values in La Esmeralda. For phospholipids, saturated fatty acids concentrations varied between 38.81 and 48.68% for Chaguaramas and Chacopata samples, respectively. In the case of polyunsaturated fatty acids, these varied between non detected and 34.51%, with high concentrations in Los Cedros (27.97%) and Chaguaramas (34.51%) samples. For the triacylglycerols, the saturated fatty acids composition oscillated between 14.27 and 53.80% with low

  5. Different ways to die: cell death modes of the unicellular chlorophyte Dunaliella viridis exposed to various environmental stresses are mediated by the caspase-like activity DEVDase.

    Science.gov (United States)

    Jiménez, Carlos; Capasso, Juan M; Edelstein, Charles L; Rivard, Christopher J; Lucia, Scott; Breusegem, Sophia; Berl, Tomás; Segovia, María

    2009-01-01

    Programmed cell death is necessary for homeostasis in multicellular organisms and it is also widely recognized to occur in unicellular organisms. However, the mechanisms through which it occurs in unicells, and the enzymes involved within the final response is still the subject of heated debate. It is shown here that exposure of the unicellular microalga Dunaliella viridis to several environmental stresses, induced different cell death morphotypes, depending on the stimulus received. Senescent cells demonstrated classical and unambiguous apoptotic-like characteristics such as chromatin condensation, DNA fragmentation, intact organelles, and blebbing of the cell membrane. Acute heat shock caused general swelling and altered plasma membrane, but the presence of chromatin clusters and DNA strand breaks suggested a necrotic-like event. UV irradiated cells presented changes typical for necrosis, together with apoptotic characteristics resembling an intermediate cell-death phenotype termed aponecrosis-like. Cells subjected to hyperosmotic shock revealed chromatin spotting without DNA fragmentation, and extensive cytoplasmic swelling and vacuolization, comparable to a paraptotic-like cell death phenotype. Nitrogen-starved cells showed pyknosis, blebbing, and cytoplasmic consumption, indicating a similarity to autophagic/vacuolar-like cell death. The caspase-like activity DEVDase was measured by using the fluorescent substrate Ac-DEVD-AMC and antibodies against the human caspase-3 active enzyme cross-reacted with bands, the intensity of which paralleled the activity. All the environmental stresses tested produced a substantial increase in both DEVDase activity and protein levels. The irreversible caspase-3 inhibitor Z-DEVD-FMK completely inhibited the enzymatic activity whereas serine and aspartyl proteases inhibitors did not. These results show that cell death in D. viridis does not conform to a single pattern and that environmental stimuli may produce different types of

  6. Theoretical studies on the influence of molecular interactions on the mechanism of electron transfer in photosynthetic reaction center of Rps. viridis

    Institute of Scientific and Technical Information of China (English)

    XU; Hong(徐红); ZHANG; Rubo(张汝波); QU; Zhengwang(屈正旺); ZHANG; Xingkang(张兴康); ZHANG; Qiyuan(张启元)

    2002-01-01

    Based on the QM/MM optimized X-ray crystal structure of the photosynthetic reaction center (PRC) of purple bacteria Rhodopseudomonas (Rps.) viridis, quantum chemistry density functional method (DFT, B3LYP/6-31G) has been performed to study the interactions between the pigment molecules and either the surrounded amino acid residues or water molecules that are either axially coordinated or hydrogen bonded with the pigment molecules, leading to an explanation of the mechanism of the primary electron-transfer (ET) reactions in the PRC. Results show that the axial coordination of amino acid residues greatly raises the ELUMO of pigment molecules and it is important for the possibility of ET to take place. Different hydrogen bonds between amino acid residues, water molecules and pigment molecules decrease the ELUMO of the pigment molecules to different extents. It is crucial for the ET taking place from excited P along L branch and sustains that the ET is a one-step reaction without through accessory bacteriochlorophyll (ABChl b). It is insufficient to treat the whole protein surrounding as a homogeneous dielectric medium.

  7. Computed tomography of the lung of healthy snakes of the species Python regius, Boa constrictor, Python reticulatus, Morelia viridis, Epicrates cenchria, and Morelia spilota.

    Science.gov (United States)

    Pees, Michael; Kiefer, Ingmar; Thielebein, Jens; Oechtering, Gerhard; Krautwald-Junghanns, Maria-Elisabeth

    2009-01-01

    Thirty-nine healthy boid snakes representing six different species (Python regius, Boa constrictor, Python reticulatus, Morelia viridis, Epicrates cenchria, and Morelia spilota) were examined using computed tomography (CT) to characterize the normal appearance of the respiratory tissue. Assessment was done subjectively and densitometry was performed using a defined protocol. The length of the right lung was calculated to be 11.1% of the body length, without a significant difference between species. The length of the left lung in proportion to the right was dependent on the species examined. The most developed left lung was in P. regius (81.2%), whereas in B. constrictor, the left lung was vestigial or absent (24.7%). A median attenuation of -814.6 HU and a variability of 45.9 HU were calculated for all species with no significant difference between species. Within the species, a significantly higher attenuation was found for P. regius in the dorsal and cranial aspect of the lung compared with the ventral and caudal part. In B. constrictor, the reduced left lung was significantly hyperattenuating compared with the right lung. Results of this study emphasize the value of CT and provide basic reference data for assessment of the snake lung in these species. Veterinary Radiology &

  8. Phenotypic Plasticity of Life History Characteristics:Quantitative Analysis of Delayed Reproduction of Green Foxtail (Setaria viridis) in the Songnen Plain of China

    Institute of Scientific and Technical Information of China (English)

    Hai-Yan Li; Yun-Fei Yang

    2008-01-01

    Green foxtail (Setaria viridis L,) is a common weed species in temperate regions. Research on the effect of delayed reproduction on the phenotypic plasticity and regularity of the vegetative and reproductive growth is of vital significance for understanding population regulation and control of the weed in the growing season, Green foxtail seeds were sown every 10 days from 25 June to 24 August of 2004. The growth and production metrics were measured via harvesting tufts and statistical analysis was carried out. The results showed that the reproductive tillers, seed number, seed biomass and one thousand-seed weight of plants at the first sowing (25 June) approximately increased 28.8, 7827.0, 1104.0 and 12.3 times compared with that at the last sowing (24 August), respectively. Total tillers, reproductive tillers and height increased linearly as the reproductive period delayed, however, biomass increased exponentially. Quadratic equations best explained the relationships between the delayed reproductive period and seed number, Inflorescence length, one thousand-seed weight, seed biomass. Based on the quantity and quality of seed production, weeding young seedlings emerging before July can be the most effective weed-control strategy in the Songnen Plain.

  9. Differential proteomic responses in hepatopancreas and adductor muscles of the green-lipped mussel Perna viridis to stresses induced by cadmium and hydrogen peroxide

    Energy Technology Data Exchange (ETDEWEB)

    Leung, Priscilla T.Y. [Swire Institute of Marine Science and School of Biological Sciences, University of Hong Kong, Pokfulam Road, Hong Kong (Hong Kong); Wang Yu [Department of Pharmacology and Pharmacy, University of Hong Kong, Sassoon Road, Hong Kong (Hong Kong); Mak, Sarah S.T.; Ng, W.C. [Swire Institute of Marine Science and School of Biological Sciences, University of Hong Kong, Pokfulam Road, Hong Kong (Hong Kong); Leung, Kenneth M.Y., E-mail: kmyleung@hkucc.hku.hk [Swire Institute of Marine Science and School of Biological Sciences, University of Hong Kong, Pokfulam Road, Hong Kong (Hong Kong)

    2011-09-15

    This study aimed to reveal the proteomic responses in the hepatopancreas and adductor muscle of a common biomonitor, Perna viridis after 14-day exposure to two model chemicals, cadmium (Cd; a toxic metal) and hydrogen peroxide (H{sub 2}O{sub 2}; a pro-oxidant), using two-dimensional gel electrophoresis coupled with multivariate statistical analyses. Unique sets of tissue-specific protein expression signatures were revealed corresponding to the two treatment groups. In the hepatopancreas, 15 and 2 spots responded to Cd and H{sub 2}O{sub 2} treatments respectively. 6 and 7 spots were differentially expressed in the adductor muscle for Cd and H{sub 2}O{sub 2} treatments, respectively. 15 differentially expressed spots were successfully identified by MALDI-TOF/TOF MS analysis. These proteins are involved in glycolysis, amino acid metabolism, energy homeostasis, oxidative stress response, redox homeostasis and protein folding, heat-shock response, and muscle contraction modulation. This is the first time, to have demonstrated that Cd exposure not only leads to substantial oxidative stress but also results in endoplasmic reticulum stress in hepatopancreas of the mussel. Such notable stress responses may be attributable to high Cd accumulation in this tissue. Our results suggested that investigations on these stress-associated protein changes could be used as a new and complementary approach in pollution monitoring by this popular biomonitor species.

  10. The induction of menadione stress tolerance in the marine microalga, Dunaliella viridis, through cold pretreatment and modulation of the ascorbate and glutathione pools.

    Science.gov (United States)

    Madadkar Haghjou, Maryam; Colville, Louise; Smirnoff, Nicholas

    2014-11-01

    The effect of cold pretreatment on menadione tolerance was investigated in the cells of the marine microalga, Dunaliella viridis. In addition, the involvement of ascorbate and glutathione in the response to menadione stress was tested by treating cell suspensions with l-galactono-1,4-lactone, an ascorbate precursor, and buthionine sulfoximine, an inhibitor of glutathione synthesis. Menadione was highly toxic to non cold-pretreated cells, and caused a large decrease in cell number. Cold pretreatment alleviated menadione toxicity and cold pretreated cells accumulated lower levels of reactive oxygen species, and had enhanced antioxidant capacity due to increased levels of β-carotene, reduced ascorbate and total glutathione compared to non cold-pretreated cells. Cold pretreatment also altered the response to l-galactono-1,4-lactone and buthionine sulfoximine treatments. Combined l-galactono-1,4-lactone and menadione treatment was lethal in non-cold pretreated cells, but in cold-pretreated cells it had a positive effect on cell numbers compared to menadione alone. Overall, exposure of Dunaliella cells to cold stress enhanced tolerance to subsequent oxidative stress induced by menadione. PMID:25240268

  11. Identification of fruit volatiles from green hawthorn (Crataegus viridis) and blueberry hawthorn (Crataegus brachyacantha) host plants attractive to different phenotypes of Rhagoletis pomonella flies in the southern United States.

    Science.gov (United States)

    Cha, Dong H; Powell, Thomas H Q; Feder, Jeffrey L; Linn, Charles E

    2011-09-01

    The apple maggot fly, Rhagoletis pomonella, infests several hawthorn species in the southern USA. In a companion paper, we showed that R. pomonella flies infesting two different mayhaw species (Crataegus opaca and C. aestivalis) can discriminate between volatile blends developed for each host fruit, and that these blends are different from previously constructed blends for northern fly populations that infest domestic apple (Malus domestica), downy hawthorn (Crataegus mollis), and flowering dogwood (Cornus florida). Here, we show by using coupled gas chromatography and electroantennographic detection (GC-EAD), gas chromatography with mass spectrometry (GC-MS), and flight tunnel bioassays, that two additional southern hawthorn fly populations infesting C. viridis (green hawthorn) and C. brachyacantha (blueberry hawthorn) also can discriminate between volatile blends for each host fruit type. A 9-component blend was developed for C. viridis (3-methylbutan-1-ol [5%], butyl butanoate [19.5%], propyl hexanoate [1.5%], butyl hexanoate [24%], hexyl butanoate [24%], pentyl hexanoate [2.5%], 1-octen-3-ol [0.5%], pentyl butanoate [2.5%], and (3E)-4,8-dimethyl-1,3,7-nonatriene (DMNT) [20.5%]) and an 8-component blend for C. brachyacantha (3-methylbutan-1-ol [0.6%], butyl acetate [50%], pentyl acetate [3.5%], butyl butanoate [9%], butyl hexanoate [16.8%], hexyl butanoate [16.8%], 1-octen-3-ol [0.3%], and pentyl butanoate [3%]). Crataegus viridis and C. brachyacantha-origin flies showed significantly higher levels of upwind oriented flight to their natal blend in flight tunnel assays compared to the alternate, non-natal blend and previously developed northern host plant blends. The presence of DMNT in C. viridis and butyl acetate in C. brachyacantha appeared to be largely responsible for driving the differential response. This sharp behavioral distinction underscores the diversity of odor response phenotypes in the southern USA, points to possible host race formation in these

  12. Studies on the Seasonal Changes in Antioxidant Enzymes Activity on Differently, Polluted Areas along the Bay of Bengal Employing Perna viridis as an Animal Model

    Directory of Open Access Journals (Sweden)

    C. Amutha

    2012-01-01

    Full Text Available Antioxidants are the innate or acquired molecules capable of slowing down or preventing the oxidative damage (damage due to reactive oxygen species that caused by free radicals. The antioxidant enzyme activity in response to season as well as hydrocarbon pollution was attempted. Rayapuram fishing harbor of Chennai (Station-1 is highly oil contaminated with oil sleeks on the surface. The relatively moderate oil contaminated area (Station-2 is about 2 km away from the fishing harbor and the least contaminated Vellar estuary Parangipettai (Station-3 was considered as the reference site. The 2 year (2005-2007 observation was recorded seasonally; the antioxidant activity varied seasonally and organally (digestive gland, gill and mantle in the marine green mussel Perna viridis. The common antioxidant enzymes such as Catalase (CAT, Superoxide Dismutase (SOD and Glutathione Reductase (GR activity were evaluated. The CAT and SOD are responded well with seasons (i.e., monsoon, pre-monsoon, post-monsoon and summer seasons. During monsoon period, both CAT and SOD activity are very low in all the Stations, in both pre-monsoon and post-monsoon period their activity were moderate and higher enzyme activity was noted during summer season. On contrary, the GR activity was noted as very low during summer and very high during pre or post monsoon and the activity was moderate during monsoon period. In addition the GR activity respond to temperature also but the other antioxidants CAT and SOD yielded no detectable activity. Among the organs liver showed higher CAT and SOD activity when compared to gill and mantle but the GR exhibited the increased activity in gill but not in liver.

  13. Photosynthetic acclimation to photon irradiance and its relation to chlorophyll fluorescence and carbon assimilation in the halotolerant green alga Dunaliella viridis.

    Science.gov (United States)

    Gordillo, F J; Jiménez, C; Chavarría, J; Xavier Niell, F

    2001-01-01

    This work describes the long-term acclimation of the halotolerant microalga Dunaliella viridis to different photon irradiance, ranging from darkness to 1500 mumol m(-2) s(-1). In order to assess the effects of long-term photoinhibition, changes in oxygen production rate, pigment composition, xanthophyll cycle and in vivo chlorophyll fluorescence using the saturating pulse method were measured. Growth rate was maximal at intermediate irradiance (250 and 700 mumol m(-2) s(-1)). The increase in growth irradiance from 700 to 1500 mumol m(-2) s(-1) did not lead to further significant changes in pigment composition or EPS, indicating saturation in the pigment response to high light. Changes in Photosystem II optimum quantum yield (F(v)/F(m)) evidenced photoinhibition at 700 and especially at 1500 mumol m(-2) s(-1). The relation between photosynthetic electron flow rate and photosyntetic O(2) evolution was linear for cultures in darkness shifting to curvilinear as growth irradiance increased, suggesting the interference of the energy dissipation processes in oxygen evolution. Carbon assimilation efficiencies were studied in relation to changes in growth rate, internal carbon and nitrogen composition, and organic carbon released to the external medium. All illuminated cultures showed a high capability to maintain a C:N ratio between 6 and 7. The percentage of organic carbon released to the external medium increased to its maximum under high irradiance (1500 mumol m(-2) s(-1)). These results suggest that the release of organic carbon could act as a secondary dissipation process when the xanthophyll cycle is saturated. PMID:16228345

  14. Structure-function analysis of heterodimer formation, oligomerization, and receptor binding of the Staphylococcus aureus bi-component toxin LukGH.

    Science.gov (United States)

    Badarau, Adriana; Rouha, Harald; Malafa, Stefan; Logan, Derek T; Håkansson, Maria; Stulik, Lukas; Dolezilkova, Ivana; Teubenbacher, Astrid; Gross, Karin; Maierhofer, Barbara; Weber, Susanne; Jägerhofer, Michaela; Hoffman, David; Nagy, Eszter

    2015-01-01

    The bi-component leukocidins of Staphylococcus aureus are important virulence factors that lyse human phagocytic cells and contribute to immune evasion. The γ-hemolysins (HlgAB and HlgCB) and Panton-Valentine leukocidin (PVL or LukSF) were shown to assemble from soluble subunits into membrane-bound oligomers on the surface of target cells, creating barrel-like pore structures that lead to cell lysis. LukGH is the most distantly related member of this toxin family, sharing only 30-40% amino acid sequence identity with the others. We observed that, unlike other leukocidin subunits, recombinant LukH and LukG had low solubility and were unable to bind to target cells, unless both components were present. Using biolayer interferometry and intrinsic tryptophan fluorescence we detected binding of LukH to LukG in solution with an affinity in the low nanomolar range and dynamic light scattering measurements confirmed formation of a heterodimer. We elucidated the structure of LukGH by x-ray crystallography at 2.8-Å resolution. This revealed an octameric structure that strongly resembles that reported for HlgAB, but with important structural differences. Structure guided mutagenesis studies demonstrated that three salt bridges, not found in other bi-component leukocidins, are essential for dimer formation in solution and receptor binding. We detected weak binding of LukH, but not LukG, to the cellular receptor CD11b by biolayer interferometry, suggesting that in common with other members of this toxin family, the S-component has the primary contact role with the receptor. These new insights provide the basis for novel strategies to counteract this powerful toxin and Staphylococcus aureus pathogenesis.

  15. GW4064, an agonist of farnesoid X receptor, represses CYP3A4 expression in human hepatocytes by inducing small heterodimer partner expression.

    Science.gov (United States)

    Zhang, Shu; Pan, Xian; Jeong, Hyunyoung

    2015-05-01

    Farnesoid X receptor (FXR) functions as a regulator of bile acid and lipid homeostasis and is recognized as a promising therapeutic target for metabolic diseases. The biologic function of FXR is mediated in part by a small heterodimer partner (SHP); ligand-activated FXR enhances SHP expression, and SHP in turn represses the activity of multiple transcription factors. This study aimed to investigate the effect of FXR activation on expression of the major drug-metabolizing enzyme CYP3A4. The effects of 3-(2,6-dichlorophenyl)-4-(3'-carboxy-2-chlorostilben-4-yl)oxymethyl-5-isopropylisoxazole (GW4064), a synthetic agonist of FXR, on the expression and activity of CYP3A4 were examined in primary human hepatocytes by using quantitative real-time polymerase chain reaction and S9 phenotyping. In human hepatocytes, treatment of GW4064 (1 μM) for 48 hours resulted in a 75% decrease in CYP3A4 mRNA expression and a 25% decrease in CYP3A4 activity, accompanied by ∼3-fold increase in SHP mRNA expression. In HepG2 cells, SHP repressed transactivation of CYP3A4 promoter by pregnane X receptor (PXR), constitutive androstane receptor (CAR), and glucocorticoid receptor. Interestingly, GW4064 did not repress expression of CYP2B6, another target gene of PXR and CAR; GW4064 enhanced CYP2B6 promoter activity. In conclusion, GW4064 represses CYP3A4 expression in human hepatocytes, potentially through upregulation of SHP expression and subsequent repression of CYP3A4 promoter activity. Clinically significant drug-drug interaction involving FXR agonists and CYP3A4 substrates may occur. PMID:25725071

  16. A study of Italian pediatric celiac disease patients confirms that the primary HLA association is to the DQ(alpha 1*0501, beta 1*0201) heterodimer.

    Science.gov (United States)

    Mazzilli, M C; Ferrante, P; Mariani, P; Martone, E; Petronzelli, F; Triglione, P; Bonamico, M

    1992-02-01

    Celiac disease (CD) has been recently reported to be primarily associated with the DQ(alpha 1*0501, beta 1*0201) heterodimer encoded in cis on DR3 haplotype and in trans in DR5,7 heterozygous individuals. The high incidence of DR5,7 heterozygotes, reflecting the high frequency of the DR5 allele in Italy, makes the analysis of the Italian CD patients critical. Polymerase chain reaction-amplified DNA from 50 CD patients and 50 controls, serologically typed for DR and DQw antigens, was hybridized with five DQA1-specific oligonucleotide probes detecting DQA1*0101 + 0102 + 0103, DQA1*0201, DQA1*0301 + 0302, DQA1*0401 + 0501 + 0601, and DQA1*0501 and a DQB1-sequence-specific oligonucleotide probe recognizing DQB1*0201 allele. As expected by the DR-DQ disequilibria, DQA1*0201 [62% in patients versus 26% in controls, relative risk (RR) = 5] and DQA1*0501 (96% versus 56%, RR = 19) show positive association with the disease. Of CD patients, 92% (50% DR3 and 42% DR5,7) compared to 18% of the controls carry both DQA1*0501 and DQB1*0201 alleles, so that the combination confers an RR of 52, higher than both the risks of the single alleles (DQA1*0501 RR = 19, DQB1*0201 RR = 30), confirming the primary role of the dimer in determining genetic predisposition to CD both in DR3 and in DR5,7 subjects. PMID:1563982

  17. Modulation of expression of the nuclear receptor NR0B2 (small heterodimer partner 1) and its impact on proliferation of renal carcinoma cells.

    Science.gov (United States)

    Prestin, Katharina; Olbert, Maria; Hussner, Janine; Isenegger, Tamara L; Gliesche, Daniel G; Böttcher, Kerstin; Zimmermann, Uwe; Meyer Zu Schwabedissen, Henriette E

    2016-01-01

    Mammalian nuclear receptors (NRs) are transcription factors regulating the expression of target genes that play an important role in drug metabolism, transport, and cellular signaling pathways. The orphan and structurally unique receptor small heterodimer partner 1 (syn NR0B2) is not only known for its modulation of drug response, but has also been reported to be involved in hepatocellular carcinogenesis. Indeed, previous studies show that NR0B2 is downregulated in human hepatocellular carcinoma, suggesting that NR0B2 acts as a tumor suppressor via inhibition of cellular growth and activation of apoptosis in this tumor entity. The aim of our study was to elucidate whether NR0B2 may also play a role in other tumor entities. Comparing NR0B2 expression in renal cell carcinoma and adjacent nonmalignant transformed tissue revealed significant downregulation in vivo. Additionally, the impact of heterologous expression of NR0B2 on cell cycle progression and proliferation in cells of renal origin was characterized. Monitoring fluorescence intensity of resazurin turnover in RCC-EW cells revealed no significant differences in metabolic activity in the presence of NR0B2. However, there was a significant decrease of cellular proliferation in cells overexpressing this NR, and NR0B2 was more efficient than currently used antiproliferative agents. Furthermore, flow cytometry analysis showed that heterologous overexpression of NR0B2 significantly reduced the amount of cells passing the G1 phase, while on the other hand, more cells in S/G2 phase were detected. Taken together, our data suggest that downregulation of NR0B2 may also play a role in renal cell carcinoma development and progression.

  18. Modulation of expression of the nuclear receptor NR0B2 (small heterodimer partner 1) and its impact on proliferation of renal carcinoma cells

    Science.gov (United States)

    Prestin, Katharina; Olbert, Maria; Hussner, Janine; Isenegger, Tamara L; Gliesche, Daniel G; Böttcher, Kerstin; Zimmermann, Uwe; Meyer zu Schwabedissen, Henriette E

    2016-01-01

    Mammalian nuclear receptors (NRs) are transcription factors regulating the expression of target genes that play an important role in drug metabolism, transport, and cellular signaling pathways. The orphan and structurally unique receptor small heterodimer partner 1 (syn NR0B2) is not only known for its modulation of drug response, but has also been reported to be involved in hepatocellular carcinogenesis. Indeed, previous studies show that NR0B2 is downregulated in human hepatocellular carcinoma, suggesting that NR0B2 acts as a tumor suppressor via inhibition of cellular growth and activation of apoptosis in this tumor entity. The aim of our study was to elucidate whether NR0B2 may also play a role in other tumor entities. Comparing NR0B2 expression in renal cell carcinoma and adjacent nonmalignant transformed tissue revealed significant downregulation in vivo. Additionally, the impact of heterologous expression of NR0B2 on cell cycle progression and proliferation in cells of renal origin was characterized. Monitoring fluorescence intensity of resazurin turnover in RCC-EW cells revealed no significant differences in metabolic activity in the presence of NR0B2. However, there was a significant decrease of cellular proliferation in cells overexpressing this NR, and NR0B2 was more efficient than currently used antiproliferative agents. Furthermore, flow cytometry analysis showed that heterologous overexpression of NR0B2 significantly reduced the amount of cells passing the G1 phase, while on the other hand, more cells in S/G2 phase were detected. Taken together, our data suggest that downregulation of NR0B2 may also play a role in renal cell carcinoma development and progression. PMID:27540300

  19. 商州药用植物大青叶蝉为害情况调查%An Investigation of Damages by Cicadella viridis to Medicinal Plant in Shangzhou

    Institute of Scientific and Technical Information of China (English)

    唐养璇

    2012-01-01

    As to the increasing damage by harmful insects to the medicinal plants in Shangluo City, an investigation is done on occurrence and damage of Cicadella viridis to Radix lsatidis, Astragalus Mongholicus and Platycodon Root, with the sample selected by five diagonal points in Shangzhou District, Shangluo City. The results show that Cicadella viridis had a widespread occurrence, but in small quantity in Radix Isatidis,the root of large-flowered skullcap and the root of balloon flower. The highest average number of insects in single plant is 1.944,0.211 and 0.486,with the lowest 0.429,0.015 and 0.090, respectively in Radix Isatidis, the root of large-flowered skullcap and Cicadella viridis, with Radix Isatidis taking the most insects. The damage of Cicadella viridis to Radix Isatidis in 2009-2010 is small, with the highest variance of 12.5%-13.34%. The general occurrence of green Cicadella viridis to Shangzhou medicinal plant is small, with little annual change, slight damage.%针对商洛市药用植物害虫为害加重的情况,采用大田对角线五点平均取样法调查了商洛市商州区板蓝根、黄芪和桔梗等药用植物上大青叶蝉的发生及为害情况。结果显示:大青叶蝉在商州区种植的板蓝根、黄芪和桔梗中普遍发生,但发生量较小,板蓝根、黄芪和桔梗中单株平均有虫数最高分别为1.944头/株、0.211头/株和0.486头/株;最低分别为0.429头/株、0.015头/株和0.09头/株;三种药材中板蓝根叶片上发生数量最大;2009—2011年大青叶蝉在板蓝根上的为害程度变幅较小。虫害指数最高变幅为12.51%-13.34%。大青叶蝉在商州中药种植区药用植物上总体发生量小;种群年变化小,害情轻微。

  20. Pharmacodynamics of TD-1792, a novel glycopeptide-cephalosporin heterodimer antibiotic used against Gram-positive bacteria, in a neutropenic murine thigh model.

    Science.gov (United States)

    Hegde, Sharath S; Okusanya, Olanrewaju O; Skinner, Robert; Shaw, Jeng-Pyng; Obedencio, Glenmar; Ambrose, Paul G; Blais, Johanne; Bhavnani, Sujata M

    2012-03-01

    TD-1792 is a novel glycopeptide-cephalosporin heterodimer investigational antibiotic that displays potent bactericidal effects against clinically relevant Gram-positive organisms in vitro. The present studies evaluated the in vivo pharmacokinetics (PK) and pharmacodynamics (PD) of TD-1792 in the neutropenic murine thigh infection animal model. TD-1792, dosed subcutaneously (SC), produced dose-dependent reduction in the thigh bacterial burden of several organisms, including methicillin-susceptible and -resistant strains of Staphylococcus aureus and Staphylococcus epidermidis (MSSA, MRSA, MSSE, MRSE, respectively), penicillin-susceptible strains of Streptococcus pneumoniae (PSSP), Streptococcus pyogenes, and vancomycin-intermediate-susceptible Staphylococcus aureus (VISA). In single-dose efficacy studies, the 1-log(10) CFU kill effective dose (ED(1-log kill)) estimates for TD-1792 ranged from 0.049 to 2.55 mg/kg of body weight administered SC, and the bacterial burden was reduced by up to 3 log(10) CFU/g from pretreatment values. Against S. aureus ATCC 33591 (MRSA), the total 24-h log(10) stasis dose (ED(stasis)) and ED(1-logkill) doses for TD-1792 were 0.53 and 1.11 mg/kg/24 h, respectively, compared to 23.4 and 54.6 mg/kg/24 h for vancomycin, indicating that TD-1762 is 44- to 49-fold more potent than vancomycin. PK-PD analysis of data from single-dose and dose-fractionation studies for MRSA (ATCC 33591) demonstrated that the total-drug 24-h area under the concentration-time curve-to-MIC ratio (AUC/MIC ratio) was the best predictor of efficacy (r(2) = 0.826) compared to total-drug maximum plasma concentration of drug-to-MIC ratio (Cmax/MIC ratio; r(2) = 0.715) and percent time that the total-drug plasma drug concentration remains above the MIC (%Time>MIC; r(2) = 0.749). The magnitudes of the total-drug AUC/MIC ratios associated with net bacterial stasis, a 1-log(10) CFU reduction from baseline and near maximal effect, were 21.1, 37.2, and 51.8, respectively. PK

  1. BMP-2 and BMP-2/7 Heterodimers Conjugated to a Fibrin/Hyaluronic Acid Hydrogel in a Large Animal Model of Mild Intervertebral Disc Degeneration.

    Science.gov (United States)

    Peeters, Mirte; Detiger, Suzanne E L; Karfeld-Sulzer, Lindsay S; Smit, Theo H; Yayon, Avner; Weber, Franz E; Helder, Marco N

    2015-01-01

    Intervertebral disc (IVD) degeneration is etiologically associated with low back pain and is currently only treated in severe cases with spinal fusion. Regenerative medicine attempts to restore degenerated tissue by means of cells, hydrogels, and/or growth factors and can therefore be used to slow, halt, or reverse the degeneration of the IVD in a minimally invasive manner. Previously, the growth factors bone morphogenetic proteins 2 and 7 (BMP-2, -7) were shown to enhance disc regeneration, in vitro and in vivo. Since BMPs have only a short in vivo half-life, and to prevent heterotopic ossification, we evaluated the use of a slow release system for BMP-2 homodimers and BMP-2/7 heterodimers for IVD regeneration. BMP growth factors were conjugated to a fibrin/hyaluronic acid (FB/HA) hydrogel and intradiscally injected in a goat model of mild IVD degeneration to study safety and efficacy. Mild degeneration was induced in five lumbar discs of seven adult Dutch milk goats, by injections with the enzyme chondroitinase ABC. After 12 weeks, discs were treated with either FB/HA-hydrogel only or supplemented with 1 or 5 μg/mL of BMP-2 or BMP-2/7. BMPs were linked to the FB/HA hydrogels using a transglutaminase moiety, to be released through an incorporated plasmin cleavage site. After another 12 weeks, goats were sacrificed and discs were assessed using radiography, MRI T2* mapping, and biochemical and histological analyses. All animals maintained weight throughout the study and no heterotopic bone formation or other adverse effects were noted during follow-up. Radiographs showed significant disc height loss upon induction of mild degeneration. MRI T2* mapping showed strong and significant correlations with biochemistry and histology as shown before. Surprisingly, no differences could be demonstrated in any parameter between intervention groups. To our knowledge, this is the first large animal study evaluating BMPs conjugated to an FB/HA-hydrogel for the treatment of

  2. GPCR二聚体别构调节的药理学作用%The Pharmacological Effect of Allosteric Regulation at GPCR Heterodimer

    Institute of Scientific and Technical Information of China (English)

    张宁; 陈京; 龚磊; 刘路路; 白波

    2013-01-01

    传统的观点认为G蛋白偶联受体(G protein coupled receptor,GPCR)主要以单体形式存在,其作用是线性的,即配体结合到正位作用位点来引起信号下游传导.但大量事实证明,GPCR也能以同源或异源二聚体的形式存在.在二聚体中,由于配体结合到二聚体中的一个单体而引起对另一个单体的别构调节,从而形成别构位点,使受体的信号途径发生改变,引起一系列功能变化.别构调节剂与传统的激动剂相比有许多优点,因此是重要的GPCR靶标的候选药物.本文就GPCR二聚体的别构调节对受体功能的影响,以及筛选GPCR二聚体别构药物的技术做一简要综述,从而有助于GPCR药物的开发和利用.%Traditionally GPCR can exist as monomer, and its function is linear. The signal is transduced when the ligand binds to the orthosteric site. It has been reported that GPCR can form homodimer or heterodimer. In the dimers, allosteric sites will form when ligand binds to one monomer and then regulates of another monomer. Therefore the signaling pathway and the function of the receptor will be changed. Compared to orthosteric agonists, allosteric modulators have a number of potential advantages, which make allosteric modulators as a drug discovery candidate for GPCR. Herein, we introduce the concept of allosteric regulation at GPCR dimers, and its impact on the function of the receptor. We also introduce the drug screening methods of allosteric regulator, and those will contribute to drug discovery for GPCR.

  3. Accumulation and Clearance of PAHs and CYP1A Levels in Farmed Green Mussels (Perna viridis L. from a Coastal Industrial Area in Thailand

    Directory of Open Access Journals (Sweden)

    Varaporn Cholumpai

    2015-07-01

    Full Text Available Green mussels (Perna viridis L. that inhabit along coastal areas with established petro-chemical industries are likely to be exposed to petroleum hydrocarbons. In year 2011, polycyclic aromatic hydrocarbons (PAHs accumulated (i.e. total of 16 PAH congeners in three different sizes of farmed mussels in the Maptaphut industrial estate which is an industrial park in the Gulf of Thailand. The levels of mean total PAHs (0.4303 ± 0.3067 µg/g dry weight in large sized (consumable size mussels were 16 and 8 times higher than medium and small sized mussels. Levels of total carcinogenic PAHs (0.0311± 0.0310 µg/g dry weight in consumable size mussels were 15 and 11 times higher compared to medium and small sized mussels. Two carcinogenic PAHs (i.e. chrysene and benzo[a]anthracene were detected in all sized mussels. The ratio of high molecular weight versus low molecular weight PAHs in all sized mussels indicated the presence of pyrogenic PAHs contamination over petrogenic PAHs in this coastal area. Further studies were carried out in year 2012 involved depuration in consumable sized mussels and effects on the cytochrome P450 1A (CYP1A biomarker were analyzed over a 30 day depuration period. The half-life was five days for total PAH burden (0.4765 ± 0.0615 µg/g dry weight, which included four non-carcinogenic PAHs. After 10, 15 and 30 days depuration in clean water, the mean total PAHs levels decreased gradually but yet significantly (0.2501 ± 0.0186, 0.1350 ± 0.0122 and 0.1554 ± 0.0353 µg/g dry weight, respectively compared to the PAH levels at day 0. Levels of CYP1A declined accordingly and at 30 days depuration CYP1A protein levels were significantly reduced by almost 3-fold compared the PAH levels in mussels from the Maptaphut industrial estate. The results show that farmed green mussels reared for human consumptions are exposed to PAHs including carcinogenic PAHs and that clearance of these PAHs is evident at 30 days depuration. This study

  4. The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes

    Directory of Open Access Journals (Sweden)

    Lemieux Claude

    2006-02-01

    Full Text Available Abstract Background The phylum Chlorophyta contains the majority of the green algae and is divided into four classes. The basal position of the Prasinophyceae has been well documented, but the divergence order of the Ulvophyceae, Trebouxiophyceae and Chlorophyceae is currently debated. The four complete chloroplast DNA (cpDNA sequences presently available for representatives of these classes have revealed extensive variability in overall structure, gene content, intron composition and gene order. The chloroplast genome of Pseudendoclonium (Ulvophyceae, in particular, is characterized by an atypical quadripartite architecture that deviates from the ancestral type by a large inverted repeat (IR featuring an inverted rRNA operon and a small single-copy (SSC region containing 14 genes normally found in the large single-copy (LSC region. To gain insights into the nature of the events that led to the reorganization of the chloroplast genome in the Ulvophyceae, we have determined the complete cpDNA sequence of Oltmannsiellopsis viridis, a representative of a distinct, early diverging lineage. Results The 151,933 bp IR-containing genome of Oltmannsiellopsis differs considerably from Pseudendoclonium and other chlorophyte cpDNAs in intron content and gene order, but shares close similarities with its ulvophyte homologue at the levels of quadripartite architecture, gene content and gene density. Oltmannsiellopsis cpDNA encodes 105 genes, contains five group I introns, and features many short dispersed repeats. As in Pseudendoclonium cpDNA, the rRNA genes in the IR are transcribed toward the single copy region featuring the genes typically found in the ancestral LSC region, and the opposite single copy region harbours genes characteristic of both the ancestral SSC and LSC regions. The 52 genes that were transferred from the ancestral LSC to SSC region include 12 of those observed in Pseudendoclonium cpDNA. Surprisingly, the overall gene organization of

  5. Diferenças morfológicas entre Amaranthus cruentus, cv. BRS Alegria, e as plantas daninhas A. hybridus, A. retroflexus, A. viridis e A. spinosus Morphological differences between Amaranthus cruentus, cv. BRS Alegria, and the weed species A. hybridus, A. retroflexus, A. viridis and A. spinosus

    Directory of Open Access Journals (Sweden)

    C.R. Spehar

    2003-12-01

    Full Text Available O pseudocereal amaranto, com as espécies Amaranthus caudatus, A. cruentus e A. hypochondriacus, domesticado pelas populações indígenas antes que a América fosse descoberta, tem se adaptado aos sistemas produtivos dos cerrados. A planta apresenta panículas apicais, divididas em pequenos ramos com frutos do tipo pixídio, com uma semente cada. Estas germinam rapidamente em presença de umidade, após atingirem a maturação fisiológica. No início da fase vegetativa, o amaranto cultivado pode confundir-se com espécies de plantas daninhas do mesmo gênero (A. hybridus, A. retroflexus, A. viridis e A. spinosus, as quais estão associadas à expansão agrícola. As diferenças morfológicas tornam-se mais visíveis após o florescimento: ramificações com flores axilares e terminais, em contraste com o amaranto, no qual a inflorescência (panícula é apical; as sementes claras das espécies cultivadas contrastam com as das invasoras, que são escuras. BRS Alegria (A. cruentus, cultivar pioneiro no Brasil, apresenta plantas com 180 cm, das quais a panícula ocupa 48 cm; maturação fisiológica aos 90 dias; resistência ao acamamento; e 0,68 g por 1.000 sementes, com produção de 2,3 t ha¹ (sementes e 5,6 t ha-1 (biomassa total. As sementes nas plantas daninhas são menores, germinam gradativamente e podem permanecer no solo por muitos anos, infestando as áreas. As diferenças morfológicas detectadas na experimentação demonstram que as espécies são distinguíveis; elas contribuem para orientar a produção de sementes e o cultivo comercial de amaranto, enfatizando as características de adaptação, em contraste com as das invasoras do mesmo gênero botânico.The pseudocereal grain amaranth, with the species Amaranthus caudatus, A. ruentus e A. hypochondriacus, domesticated by indigenous populations before America was discovered, has shown adaptability to production systems in the Brazilian savannah. The plants present apical

  6. Estabilidad temporal de las infracomunidades de parásitos en la borrachilla Scartichthys viridis (Valenciennes, 1836 (Pisces : Blenniidae en la costa central de Chile Temporal stability in parasite infracommunities of the blenny Scartichthys viridis(Valenciennes, 1836 (Pisces: Blenniidae on the central coast of Chile

    Directory of Open Access Journals (Sweden)

    FREDDY DÍAZ

    2002-12-01

    Full Text Available Se comparan las infracomunidades de parásitos de la borrachilla Scartichthys viridis (Pisces: Blenniidae de tres muestras tomadas en un lapso de 17 meses, entre 1999 y 2001, desde pozas intermareales vecinas a Las Cruces (33°27' S, 71°37' O, Chile central. El objetivo es averiguar si la riqueza, diversidad, abundancia y composición de las infracomunidades de parásitos son persistentes o no en el tiempo ontogenético y cronológico. Se recolectaron 10 taxa parasitarios en cerca del 89 % de los 63 huéspedes examinados, de los cuales ocho eran metazoarios. La búsqueda de protozoos se realizó sólo en los últimos 2 años. El 75 % de los ocho taxa de metazoos ocurrieron en los tres años, uno no estuvo presente en un año, y otro fue encontrado solamente en un año. La mayoría de los huéspedes examinados albergaba protozoos parásitos. La prevalencia de los protozoos Cryptobia sp. fue alta para ambos años, y menor en Trichodina sp. La longitud total de los huéspedes era un predictor relevante de las variaciones en la riqueza, abundancia, diversidad y composición infracomunitaria en el conjunto de los tres años. En cambio, el año de muestreo no lo fue, en particular al comparar entre huéspedes de similar longitud total. Estos resultados son similares a los encontrados en infracomunidades de parásitos de otras especies de peces en Chile, en que hay baja variabilidad en las propiedades agregadas de las infracomunidades en el tiempo cronológico. Se discute acerca de la extensión relativa del tiempo ontogenético en contraste al tiempo cronológico al ser probablemente ambos de importancia en las características de las infracomunidades, y se propone que se explore la medida en la cual estos resultados constituyen un patrón.Parasite infracommunities of the blenny Scartichthys viridis (Pisces: Blenniidae are compared among three samples taken within a 17-month period during three consecutive years (1999-2001, from intertidal pools at

  7. Sphodromantis viridis (Forskal, 1775: New for Portugal and new records of the rare and small mantids Apteromantis aptera (Fuente, 1894 and Perlamantis allibertii Guérin-Méneville, 1843 in the country (Mantodea: Mantidae and Amorphoscelidae

    Directory of Open Access Journals (Sweden)

    Eduardo Marabuto

    2014-01-01

    Full Text Available Several new records are presented on some of the least known mantis species in the Iberian Peninsula. From data collected in Portugal, their analysis has proven to represent an important advancement in the knowledge of this group of insects for the country and the Western Mediterranean area. Twenty new citations provide a better understanding on the distribution of the crepuscular species Perlamantis allibertii, the IUCN red listed Apteromantis aptera and the first Portuguese records of Sphodromantis viridis, extending their western limits of occurrence in Europe. The data thus gathered emphasizes the need to invest in biodiversity assessment for increased knowledge on species distribution and phenology but also for monitoring over time, essential to better ascertaining ecosystem services, the effects of climate change and habitat conservation.

  8. Radiation Dose and Risk Assessments from Polonium-210 in Green Mussels (Perna viridis) and Seafood Consumers Living nearby the Industrial Area in Chonburi Province, Thailand

    Energy Technology Data Exchange (ETDEWEB)

    Tumnoi, Y.; Phaopeng, N. [Office of Atoms for Peace - OAP (Thailand)

    2014-07-01

    Marine environmental samples including seawater (filtered and unfiltered), suspended particles, and green mussels (Perna viridis) were collected from Sriracha and Angsira areas located in Chonburi province in order to determine Po-210 radioactivity. The former was chosen because it is generally believed that this area has been contaminated by one of the largest industrial estates in Thailand and others human-activities (non-nuclear activities) nearby such as oil refineries and Coal Power Plants. Discharges, ashes, and wastes released from these activities may result in an increase of Po-210 concentration in marine environment when compared to other areas. The later was designated to serve as a control site in this study since this area is unlikely to be impacted by industrial activities. Our results revealed that, in the filtered seawater, averaged values of Po-210 level were 0.26 + 0.14 mBq/L (Sriracha) and 0.56 + 0.42 mBq/L (Angsira) and, in the unfiltered seawater, means of Po-210 radioactivity were 2.37 + 0.32 mBq/L (Sriracha) and 4.20 + 2.78 mBq/L (Angsira). Furthermore, the suspended particles contained Po-210 concentrations with averaged values of 14.11 + 8.87 Bq/kg dw (Sriracha) and 102.21 + 51.49 Bq/kg dw (Angsira) while averaged Po-210 levels of 35.74 + 17.53 Bq/kg dw (Sriracha) and 71.12 + 62.88 Bq/kg dw (Angsira) were found in the green mussels examined. The present finding indicates that there is no radiological impact caused by those human activities to the marine environment at Sriracha. Radiation dose assessment was also performed in both the green mussels and human who consume green mussels. The results show that the green mussels farmed at Sriracha and Angsira received averaged radiation dose rates from Po-210 at 0.0007 and 0.0015 mGy/d, respectively. In addition, our results reveal that populations living in Chonburi province and ingesting the green mussels from these 2 locations received radiation dose rates from Po-210 at the means of 44.25 and

  9. Characterization of a glutamine synthetase gene DvGS1 from Dunaliella viridis and investigation of the impact on expression of DvGS1 in transgenic Arabidopsis thaliana.

    Science.gov (United States)

    Zhu, Chenguang; Fan, Qianlan; Wang, Wei; Shen, Chunlei; Wang, Peipei; Meng, Xiangzong; Tang, Yuanping; Mei, Bing; Xu, Zhengkai; Song, Rentao

    2014-01-01

    A novel glutamine synthetase (GS) gene DvGS1 showing highest amino acid sequence identity of 78 % with the other homologous GS proteins from green algae, was isolated and characterized from Dunaliella viridis. Phylogenetic analysis revealed that DvGS1 occupied an independent phylogenetic position which was different with the GSs from higher plants, animals and microbes. Functional complement in E. coli mutant confirmed that the DvGS1 encoded functional GS enzyme. Real-time PCR analysis of DvGS1 in D. viridis cells under nitrogen starvation revealed that the mRNA level of DvGS1 was positively up-regulated in 12 h. The DvGS1 levels at the points of 12 and 24 h were separately twofold and fourfold of the level before nitrogen starvation. In order to investigate the potential application of DvGS1 in higher plants, the transgenic study of DvGS1 in Arabidopsis thaliana was carried out. Phenotype identification demonstrated that all three transgenic lines of T3 generation showed obviously enhanced root length (26 %), fresh weight (22-46 % at two concentrations of nitrate supplies), stem length (26 %), leaf size (29 %) and silique number (30 %) compared with the wild-type Arabidopsis. Biochemical analysis confirmed that all three transgenic lines had higher total nitrogen content, soluble protein concentration, total amino acid content and the leaf GS activity than the wild type plants. The free NH4 (+) and NO3 (-) concentration in fresh leaves of three transgenic lines were reduced by 17-26 % and 14-15 % separately (at two concentrations of nitrate supplies) compared with those of the wild types. All the results indicated that over-expression of DvGS1 in Arabidopsis significantly results in the improvement of growth phenotype and the host's nitrogen use efficiency. PMID:24307252

  10. Anti-Fatigue Effect Derived from Compound Enzyme Hydrolysates of Perna Viridis Meat%翡翠贻贝肉复合酶解物的抗疲劳作用

    Institute of Scientific and Technical Information of China (English)

    方富永; 苗艳丽; 程诚; 马孝甜; 陈木连; 宋文东

    2012-01-01

    Objective:To study the anti-fatigue function from compound enzyme hydrolysates of Perna Viridis meat by mice experiments. Method: Five groups of mice were divided into low-dose group, medium-dose group, high-dose group, original meat group and control group. Low, medium and high dose group were given hydrolysates, which were prepared with papain, neutral protease and pineapple proteinase in turn. Original meat group and control were respectively given Perna Viridis meat powder and saline similarly for 30 days. Blood lactic acid, blood urea nitrogen, liver glyco-gen,and the time of loaded swimming were measured to study anti-fatigue function. Results:Compared with the control, High-dose group could significantly decreased the blood lactic acid and blood urea nitrogen (P0.05). Conclusion:Compound enzyme Hydrolysates of Perna Viridis meat has anti-fatigue effects by mice experiments.%目的:通过动物实验研究翡翠贻贝肉复合酶解物的抗疲劳效果.方法:将昆明种小鼠分成5组,设低、中、高剂量组、原肉组和对照组.翡翠贻贝肉浆依次以木瓜蛋白酶、中性蛋白酶、菠萝蛋白酶水解制备酶解物,用于3个剂量组的小鼠灌胃.原肉组和对照组分别以翡翠贻贝肉原肉粉及生理盐水灌胃.连续灌胃30 d后,测定各组小鼠运动后血乳酸、血清尿素氮浓度及肝糖原含量,观察负重游泳时间,根据试验结果判断抗疲劳效果.结果:与对照组比较,翡翠贻贝肉复合酶解物高剂量组小鼠运动后血乳酸及血清尿素氮浓度降低极显著(P<0.01),肝糖原含量显著升高(P<0.05),负重游泳时间显著延长(P<0.05);中、低剂量组、原肉组与对照组相比,上述各项试验指标均无显著性影响(P>0.05).结论:动物实验证明翡翠贻贝肉复合酶解物具有抗疲劳作用.

  11. MAR序列介导野苋菜凝集素基因在白菜中的表达%Expression of Amaranthus viridis L. Agglutinin Mediated by Matrix Attachment Region (MAR) Sequence in Transgenic Chinese Cabbage

    Institute of Scientific and Technical Information of China (English)

    邓智年; 魏源文; 吕维莉; 李杨瑞

    2007-01-01

    以'丰顺'白菜带柄子叶为转化受体,用带有MAR(Matrix Attachment Region)和不带MAR的两种植物表达载体进行农杆菌介导转化野苋菜凝集素基因(Amaranthus viridis L. agglutinin,AVA)获得转基因的抗蚜小白菜.分析MAR序列介导对转基因表达的影响.表明利用MAR序列介导AVA基因表达,获得转基因植株的数量比对照提高29.63%;转AVA基因白菜对桃蚜(Myzus persicae)的群体发展有一定的抑制作用,平均抑制率为55.8%;MAR序列介导AVA基因表达的转基因植株中,该基因的表达水平比对照高,并且不同转基因单株间AVA基因表达差异比对照小.

  12. 野苋菜凝集素基因的克隆及抗蚜性%Cloning of AVA Gene from Amaranthus viridis and Effect of Aphid Resistance on Transgenic Tobacco Plants

    Institute of Scientific and Technical Information of China (English)

    邓智年; 李楠; 魏源文; 吕维莉; 李杨瑞

    2007-01-01

    通过PCR从苋科植物野苋菜Amaranthus viridis L.基因组DNA中扩增出野苋菜凝集素的核基因片段AVA.序列分析结果表明该基因为1 831 bp,含有一个922 bp的内含子和两个分别为212 bp和697 bp的外显子.采用反向PCR技术获得了该基因的编码区克隆.分别构建含有内含子和不含内含子的AVA基因植物表达载体pBI121AVA-GUS和pBI121AVAc-GUS,通过根癌农杆菌介导法转化烟草.PCR、GUS检测结果均表明AVA基因不仅已整合到烟草基因组DNA中,而且初步表明转基因烟草有AVA蛋白表达.抗蚜实验表明含内含子和无内含子的AVA基因在转基因烟草中的抗蚜能力不同,转AVA和AVAc烟草对蚜虫的抑制率分别为60.81%和50.63%,有的植株高达97%.实验结果表明所克隆的AVA基因是具有抗蚜能力的苋菜凝集素基因家族中的新成员.

  13. Degradation of phycobilisomes in Synechocystis sp. PCC6803: evidence for essential formation of an NblA1/NblA2 heterodimer and its codegradation by A Clp protease complex.

    Science.gov (United States)

    Baier, Antje; Winkler, Wiebke; Korte, Thomas; Lockau, Wolfgang; Karradt, Anne

    2014-04-25

    When cyanobacteria acclimate to nitrogen deficiency, they degrade their large (3-5-MDa), light-harvesting complexes, the phycobilisomes. This massive, yet specific, intracellular degradation of the pigmented phycobiliproteins causes a color change of cyanobacterial cultures from blue-green to yellow-green, a process referred to as chlorosis or bleaching. Phycobilisome degradation is induced by expression of the nblA gene, which encodes a protein of ~7 kDa. NblA most likely acts as an adaptor protein that guides a Clp protease to the phycobiliproteins, thereby initiating the degradation process. Most cyanobacteria and red algae possess just one nblA-homologous gene. As an exception, the widely used "model organism" Synechocystis sp. PCC6803 expresses two such genes, nblA16803 and nblA26803, both of whose products are required for phycobilisome degradation. Here, we demonstrate that the two NblA proteins heterodimerize in vitro and in vivo using pull-down assays and a Förster energy-transfer approach, respectively. We further show that the NblA proteins form a ternary complex with ClpC (the HSP100 chaperone partner of Clp proteases) and phycobiliproteins in vitro. This complex is susceptible to ATP-dependent degradation by a Clp protease, a finding that supports a proposed mechanism of the degradation process. Expression of the single nblA gene encoded by the genome of the N2-fixing, filamentous cyanobacterium Nostoc sp. PCC7120 in the nblA1/nblA2 mutant of Synechocystis sp. PCC6803 induced phycobilisome degradation, suggesting that the function of the NblA heterodimer of Synechocystis sp. PCC6803 is combined in the homodimeric protein of Nostoc sp. PCC7120.

  14. On Moniligaster coeruleus Horst (Moniligaster viridis Beddard)

    NARCIS (Netherlands)

    Horst, R.

    1896-01-01

    In my description of this large earthworm from Borneo ¹) I made already the suggestion, that the species probably did not belong to the genus Moniligaster, but I preferred to range it provisionally in this genus till we were better informed about the characters of several Moniligaster- species, only

  15. NaHCO3浓度对等鞭藻3011、等鞭藻塔溪堤品系和绿色巴夫藻生长的影响%Effect of NaHCO3 concentration on growth of Isochrysis galbana 3011 strain, Tahitian I.galbana strain and Pavlova viridis

    Institute of Scientific and Technical Information of China (English)

    梁英; 麦康森; 孙世春; 梁广尧

    2001-01-01

    对等鞭藻3011(Isochrysis galbana3011)、等鞭藻塔溪堤品系(Tahitian Isochrysisgalbana)和绿色巴夫藻(Pavlova viridisai)3株微藻种进行培养。NaHCO3的质量浓度分别为0,200,400,800,1200和1600mg/L,培养温度(22±1)℃,盐度28,光照强度5000lx。结果表明,NaHCO3的浓度对3株微藻生长的影响差异显著,经过6d的培养,培养液中不加NaHCO3、但连续充气组中3株微藻的细胞浓度都达到最大值;除充气不加NaHCO3组外,3株微藻的细胞浓度都在NaHCO3 1600mg/L组中达到最大值。%NaHCO3 concentrations were designed at 100,200, 400, 800, 1 200and 1 600 mg/L. Three marine microalgal strains (Isochrysis galbana 3011, Tahitian Isochrysis galbana and Pavlova viridis)were cultured at water temperature (22±1)℃; the salinity was adjusted to 28 by using distilled water,and the light intensity was 5 000 lx. The results showed that NaHCO3 had significant influence on the growth of the 3 marine microalgal strains. After 6 days culture, the 3 marine microalgal strains all grew the best when NaHCO3 concentration was 0 mg/L with continuously air-bubbling (aerating groups). Except that, the optimum NaHCO3 concentration for the highest cell density of I.galbana 3011, Tahitian I.galbana and P.viridis were all at 1 600 mg/L.

  16. 珠江河口区翡翠贻贝中有机氯农药和多氯联苯含量及分布%Concentrations and distribution of organochlorinated pesticides and PCBs in green-lipped mussels, Perna viridis collected from the Pearl River Estuarine Zone

    Institute of Scientific and Technical Information of China (English)

    方展强; 张润兴; 黄铭洪

    2001-01-01

    Concentrations of HCHs, DDTs and PCBs were determined in the green-lipped mussels ( Perna viridis ), collected from thirteen sites along the Pearl River estuarine zone from July to August 1996. The ranges of HCHs, DDTs and PCBa in mussels were in the ranges of not - detected ~1.1 ng g-1, 9.5~ 191 ng g- 1 and 82.8 ~ 615.1 ng g- 1 (lipid weight basis) respectively. Relative high levels of DDTs and PCBs were found in mussels collected from the mouth of Pearl River. Mus~ls collected from Tsim Sha Tsui Pier (Victoria Harbour) showed the highest contamination of PCBs, while those collected from Hebao Island (Western estuarine zone) had the relative high contamination of DDTs and HCHs. Penta- and hexa-chlorinated PCB were selectively accumulated in Perna viridis. The isomeric composition analysis of residues in mussels from thirteen coastal locations indicated that there were two different PCBs pollution sources in the Pearl River Estuarine zone.%对分布于珠江河口区海域的翡翠贻贝有机氯农药和多氯联苯的含量进行测定,结果显示:HCHs为ND—1.1ng·g-1,DDTs为9.5—191ng·g-1,PCBs为82.8—615.1ng·g-1.尖沙嘴码头(维多利亚港)贻贝积累的PCBs浓度量高,珠江河口桂山岛和外伶仃岛的贻贝积累的DDTs和PCBs浓度较高,而荷包岛(珠江河口西海区)的贻贝则检出含量较高的HCHs和DDTs.贻贝选择性积累含5—6个氯原子数的PCB异构体.各采样点贻贝积累的PCBs组成分析表明珠江河口区海域存在两个PCBs污染源.

  17. Efeito de cascas de café e de arroz dispostas nas camadas do solo sobre a germinação e o crescimento inicial do caruru-de-mancha Allelopathic effect of coffee and rice husks arranged in soil layers on the germination and initial growth of Amaranthus viridis

    Directory of Open Access Journals (Sweden)

    J.C.F. Santos

    2001-08-01

    Full Text Available Estudos dos efeitos dos resíduos de plantas pela utilização de coberturas mortas no controle das plantas daninhas têm apresentado dificuldade de determinar a diferenciação entre alelopatia e competição. Atualmente, muitas pesquisas têm se referido a critérios que propõem evidência à alelopatia. Este trabalho em casa de vegetação visou determinar os efeitos alelopáticos proporcionados pelas cascas de café e de arroz sobre o caruru-de-mancha, por meio das disposições desses resíduos nas camadas do solo. O delineamento experimental foi o de blocos casualizados, com os tratamentos em quatro repetições e organizados num esquema fatorial (3x3, sendo cascas de café e de arroz e vermiculita expandida como um fator e suas disposições, com resíduos depositados no topo, incorporados na superfície e incorporados no fundo, como segundo fator. Como testemunha foi usado um tratamento adicional sem cobertura. De modo geral, resíduos de cascas proporcionaram inibição da germinação e estímulo ao crescimento do caruru-de-mancha. A casca de arroz proporcionou menor índice de velocidade de emergência e germinação de sementes do que a casca de café. A casca de café depositada no topo proporcionou maior crescimento e maior peso da matéria seca do caruru-de-mancha, seguido pela mesma casca incorporada na superfície do solo.Studies of plant residue effects involving mulches to control weeds in perennial crops are difficult to carry out due to the need to differentiate between allelopathy and competition. Many researches, nowadays, refer to criteria proving allelopathy. This work was established under greenhouse conditions to determine the allelopathic effects of coffee and rice husks on Amaranthus viridis through their arrangements in soil layers. The experimental design was a randomized block with four replications, arranged in a 3 x 3 factorial scheme, with coffee and rice husks and expanded vermiculite being one factor and

  18. МАТЕРИАЛЫ К ГЕЛЬМИНТОФАУНЕ ЗЕЛЕНОЙ ЖАБЫ B UFO VIRIDIS LAURENTI, 1768 (AMPHIBIA: ANURA) В САМАРСКОЙ ОБЛАСТИ

    OpenAIRE

    Чихляев, И.

    2014-01-01

    Представлены данные о гельминтофауне зеленой жабы Bufo viridis Laurenti, 1768 на территории Самарской области. Всего обнаружено 14 видов гельминтов из 5 классов: Monogenea (1), Cestoda (1), Trematoda (6), Nematoda (5) и Acanthocephala (1). Типичными паразитами с высокой степенью инвазии являются геонематоды Cosmocerca commutata (Diesing, 1851), Oswaldocruzia filiformis (Goeze, 1782) и Rhabdias bufonis (Schrank, 1788). Моногенеи, цестоды, трематоды и скребни относятся к числу редких паразитов ...

  19. 骨形态发生蛋白2/7异二聚体对人脂肪间充质干细胞成骨分化的促进作用%Promoted role of bone morphogenetic protein 2/7 heterodimer in the osteogenic differentiation of human adipose-derived stem cells

    Institute of Scientific and Technical Information of China (English)

    张晓; 刘云松; 吕珑薇; 陈彤; 吴刚; 周永胜

    2016-01-01

    Objective:To investigate the role of bone morphogenetic protein 2/7 heterodimer (BMP-2/7)in the osteogenesis of human adipose-derived stem cells (hASCs).Methods:hASCs were exposed to three different treatments in vitro:osteogenic medium with 1 50 μg/L BMP-2/7 (experimental group), osteogenic medium alone (OM group)and proliferation medium (PM group).After 1 ,4 and 7 days of osteogenic induction,the amount of cellular DNA was measured to investigate the cytotoxicity.After 7 and 1 4 days,alkaline phosphatase (ALP)staining and quantification were performed to test the activity of ALP.After 21 and 28 days,the calcification deposition was determined by Alizarin Red S (ARS)stai-ning and quantification.The expressions of the osteoblast-related genes were tested on days 1 ,4,7 and 1 4.In the in vivo study,6 nude mice were used and 4 groups were set and implanted subcutaneously into the back of nude mice:(1 )β-TCP scaffold only (scaffold control group );(2 )β-TCP scaffold with hASCs cultured by PMin vitro for 1 week (PMcontrol group);(3)β-TCP scaffold with hASCs cultured by OM in vitro for 1 week (OM control group);(4)β-TCP scaffold with hASCs cultured by OM with 1 50 μg/L BMP-2/7 in vitro for 1 week (test group).After 4 weeks of implantation,histological staining was performed to evaluate the in vivo osteogenesis of hASCs.Results:After induction for 1 day,there was no significant difference between the experimental group and the PM group on the cellular DNA con-tent (P>0.05 ).After 4 days,the cellular DNA content increased under the stimulation of BMP-2/7 (P0.05).ALP ac-tivity was higher by the induction of BMP-2/7 than in OMalone and PM(P<0.05).More mineraliza-tion deposition and more expressions of osteoblast-related genes such as Runx2,ALP,COL-1 A1 and OC were determined in the experimental group at different time points (P<0.05).HE staining showed that, in the test group and OM control group,the extracellular matrix (ECM)with eosinophilic staining were observed

  20. The effects of chenodeoxycholic acid on the expression of farnisoid X receptor and small heterodimer partner in the kidney of high-fructose-fed rats.%鹅去氧胆酸对高果糖喂养大鼠肾组织中法尼醇X受体和小异源二聚体伴侣的影响

    Institute of Scientific and Technical Information of China (English)

    胡志娟; 任路平; 王超; 李芳; 董春霞; 李刚; 刘冰; 宋光耀

    2013-01-01

    目的 通过观察高果糖喂养大鼠肾组织中法尼醇X受体(FXR)及小异源二聚体伴侣(SHP)的表达,探讨高果糖致肾损伤的机制.通过鹅去氧胆酸的干预,初步探讨其保护作用机制.方法 将48只大鼠分为正常对照组(对照组,n=16),高果糖组(n=16)及鹅去氧胆酸组(n=16),8周及16周时分批处死,检测各组大鼠的肾功能、空腹血糖、血脂及24 h尿微量白蛋白;检测大鼠肾皮质三酰甘油含量;免疫组织化学染色检测FXR的表达和定位;FXR及SHP的表达采用实时荧光定量PCR分析技术,并应用Western-blot法分析FXR及SHP的蛋白表达.结果 与对照组比较,高果糖组大鼠左肾重/体重,血中三酰甘油和极低密度脂蛋白水平明显升高,24 h尿白蛋白增加,肾组织中三酰甘油水平明显增高,且随时间延长而加重(P<0.05);高果糖组大鼠肾组织FXR表达明显下调,FXR及SHP的基因及蛋白表达明显减少,且随时间延长其表达减弱(P<0.01).鹅去氧胆酸组上述指标明显改善(P<0.05).结论 高果糖饮食喂养可导致大鼠高三酰甘油血症、高极低密度脂蛋白血症、高尿酸血症和尿微量白蛋白水平增加,可引起大鼠肾皮质三酰甘油蓄积,使大鼠肾组织FXR及SHP的基因及蛋白表达明显减少,从而使肾脏脂质合成增加,进而导致肾脏损伤.鹅去氧胆酸可上调高果糖喂养大鼠肾组织FXR及SHP的基因及蛋白表达,减轻肾损伤.%Objective To observe the effects of high - fructose - feeding on farnisoid X receptor ( FXR ) and small heterodimer partner ( SHP ) in rat kidney so as to explore the mechanism of renal injury and to investigate the protective effect of chenodexoycholic acid ( CDCA ) intervention. Methods Forty - eight healthy male Wistar rats were randomly divided into three groups ( n = 16 ): normal control group, high fructose group and CDCA group. The rats were sacrificed at the end of 8 and 16 weeks. The BUN, Scr, UA, fast glucose

  1. ВЛИЯНИЕ ЭТАНОЛА НА СОСТАВ И ВЫХОД БИОМАССЫ DUNALIELLA VIRIDIS TEODOR. ПРИ КВАЗИНЕПРЕРЫВНОМ КУЛЬТИВИРОВАНИИ

    OpenAIRE

    Божков, А.; Мензянова, Н.; Сысенко, Е.

    2014-01-01

    Исследовали влияние этанола (конечная концентрация 0,3 и 0,5%) на выход биомассы, ее состав (содержание нуклеиновых кислот, протеинов, липидов, хлорофиллов a и b, -каротина и экзо полисахаридов) и морфологию клеток Dunaliella viridis в режиме квазинепрерывного культивирования. Обнаружено, что добавление в среду культивирования этанола до конечной концентрации 0,3% увеличивало выход биомассы в 2 раза по сравнению с квазинепрерывным культивированием без этанола и в 2,5 раза по сравнению с нако...

  2. Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase–an Essential Enzyme of the Polyamine Metabolism

    Science.gov (United States)

    Krossa, Sebastian; Faust, Annette; Ober, Dietrich; Scheidig, Axel J.

    2016-01-01

    The highly conserved bacterial homospermidine synthase (HSS) is a key enzyme of the polyamine metabolism of many proteobacteria including pathogenic strains such as Legionella pneumophila and Pseudomonas aeruginosa; The unique usage of NAD(H) as a prosthetic group is a common feature of bacterial HSS, eukaryotic HSS and deoxyhypusine synthase (DHS). The structure of the bacterial enzyme does not possess a lysine residue in the active center and thus does not form an enzyme-substrate Schiff base intermediate as observed for the DHS. In contrast to the DHS the active site is not formed by the interface of two subunits but resides within one subunit of the bacterial HSS. Crystal structures of Blastochloris viridis HSS (BvHSS) reveal two distinct substrate binding sites, one of which is highly specific for putrescine. BvHSS features a side pocket in the direct vicinity of the active site formed by conserved amino acids and a potential substrate discrimination, guiding, and sensing mechanism. The proposed reaction steps for the catalysis of BvHSS emphasize cation-π interaction through a conserved Trp residue as a key stabilizer of high energetic transition states. PMID:26776105

  3. Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase-an Essential Enzyme of the Polyamine Metabolism.

    Science.gov (United States)

    Krossa, Sebastian; Faust, Annette; Ober, Dietrich; Scheidig, Axel J

    2016-01-01

    The highly conserved bacterial homospermidine synthase (HSS) is a key enzyme of the polyamine metabolism of many proteobacteria including pathogenic strains such as Legionella pneumophila and Pseudomonas aeruginosa; The unique usage of NAD(H) as a prosthetic group is a common feature of bacterial HSS, eukaryotic HSS and deoxyhypusine synthase (DHS). The structure of the bacterial enzyme does not possess a lysine residue in the active center and thus does not form an enzyme-substrate Schiff base intermediate as observed for the DHS. In contrast to the DHS the active site is not formed by the interface of two subunits but resides within one subunit of the bacterial HSS. Crystal structures of Blastochloris viridis HSS (BvHSS) reveal two distinct substrate binding sites, one of which is highly specific for putrescine. BvHSS features a side pocket in the direct vicinity of the active site formed by conserved amino acids and a potential substrate discrimination, guiding, and sensing mechanism. The proposed reaction steps for the catalysis of BvHSS emphasize cation-π interaction through a conserved Trp residue as a key stabilizer of high energetic transition states. PMID:26776105

  4. Interactions of Nucleic Acid Bases with Temozolomide. Stacked, Perpendicular, and Coplanar Heterodimers.

    Science.gov (United States)

    Kasende, Okuma Emile; Nziko, Vincent de Paul N; Scheiner, Steve

    2016-09-01

    Temozolomide (TMZ) was paired with each of the five nucleic acid bases, and the potential energy surface searched for all minima, in the context of dispersion-corrected density functional theory and MP2 methods. Three types of arrangements were observed, with competitive stabilities. Coplanar H-bonding structures, reminiscent of Watson-Crick base pairs were typically the lowest in energy, albeit by a small amount. Also very stable were perpendicular arrangements that included one or more H-bonds. The two monomers were stacked approximately parallel to one another in the third category, some of which contained weak and distorted H-bonds. Dispersion was found to be a dominating attractive force, largest for the stacked structures, and smallest for the coplanar dimers.

  5. Plasmonic behavior of gold nanorod heterodimers with free-electron feed

    International Nuclear Information System (INIS)

    The plasmon coupling between metal nanostructures can lead to huge local electric field enhancement and new plasmon modes. Here, we study the effect of the close proximity of two gold nanorod particles on the modification of localized surface plasmon (LSP) modes of the individual on gold nanorod in spectral and spatial domain using cathodoluminescence (CL) spectroscopy and imaging in a high resolution scanning electron microscope (SEM). Significantly enhanced resonant emission is observed from the nanorod dimers when the electron beam is injected around the junction between the rods, where the local density of electromagnetic states is raised

  6. Formation of functional heterodimers by isozymes 1 and 2 of pyruvate dehydrogenase kinase.

    Science.gov (United States)

    Boulatnikov, Igor; Popov, Kirill M

    2003-02-21

    Pyruvate dehydrogenase kinase (PDK) is a mitochondrial enzyme responsible for regulation of the pyruvate dehydrogenase complex and, consequently, aerobic oxidation of carbohydrate fuels in general. In mammals, there are four genetically and biochemically distinct forms of PDK that are expressed in a tissue-specific manner (PDK1, PDK2, PDK3, and PDK4). These protein kinases have been shown to function as dimers, but the possibility of heterodimerization between various isozyme subunits has not yet been investigated. Here, we demonstrate that two members of the PDK family, PDK1 and PDK2, form heterodimeric species when coexpressed in the same Escherichia coli cell. The heterodimeric kinase produced in vivo was purified to near homogeneity by affinity chromatography. The purified kinase was stable and was not subjected to reassortment of the subunits. The heterodimeric kinase was catalytically active and was clearly distinct from homodimeric PDK1 or PDK2 with respect to kinetic parameters, site specificity and regulation. These data strongly suggest that heterodimerization between PDK1 and PDK2 adds another level of diversity to this protein family in addition to that which arises from gene multiplicity. PMID:12573248

  7. The G Protein-Coupled Receptor Heterodimer Network (GPCR-HetNet and Its Hub Components

    Directory of Open Access Journals (Sweden)

    Dasiel O. Borroto-Escuela

    2014-05-01

    Full Text Available G protein-coupled receptors (GPCRs oligomerization has emerged as a vital characteristic of receptor structure. Substantial experimental evidence supports the existence of GPCR-GPCR interactions in a coordinated and cooperative manner. However, despite the current development of experimental techniques for large-scale detection of GPCR heteromers, in order to understand their connectivity it is necessary to develop novel tools to study the global heteroreceptor networks. To provide insight into the overall topology of the GPCR heteromers and identify key players, a collective interaction network was constructed. Experimental interaction data for each of the individual human GPCR protomers was obtained manually from the STRING and SCOPUS databases. The interaction data were used to build and analyze the network using Cytoscape software. The network was treated as undirected throughout the study. It is comprised of 156 nodes, 260 edges and has a scale-free topology. Connectivity analysis reveals a significant dominance of intrafamily versus interfamily connections. Most of the receptors within the network are linked to each other by a small number of edges. DRD2, OPRM, ADRB2, AA2AR, AA1R, OPRK, OPRD and GHSR are identified as hubs. In a network representation 10 modules/clusters also appear as a highly interconnected group of nodes. Information on this GPCR network can improve our understanding of molecular integration. GPCR-HetNet has been implemented in Java and is freely available at http://www.iiia.csic.es/~ismel/GPCR-Nets/index.html.

  8. The G protein-coupled receptor heterodimer network (GPCR-HetNet) and its hub components.

    Science.gov (United States)

    Borroto-Escuela, Dasiel O; Brito, Ismel; Romero-Fernandez, Wilber; Di Palma, Michael; Oflijan, Julia; Skieterska, Kamila; Duchou, Jolien; Van Craenenbroeck, Kathleen; Suárez-Boomgaard, Diana; Rivera, Alicia; Guidolin, Diego; Agnati, Luigi F; Fuxe, Kjell

    2014-05-14

    G protein-coupled receptors (GPCRs) oligomerization has emerged as a vital characteristic of receptor structure. Substantial experimental evidence supports the existence of GPCR-GPCR interactions in a coordinated and cooperative manner. However, despite the current development of experimental techniques for large-scale detection of GPCR heteromers, in order to understand their connectivity it is necessary to develop novel tools to study the global heteroreceptor networks. To provide insight into the overall topology of the GPCR heteromers and identify key players, a collective interaction network was constructed. Experimental interaction data for each of the individual human GPCR protomers was obtained manually from the STRING and SCOPUS databases. The interaction data were used to build and analyze the network using Cytoscape software. The network was treated as undirected throughout the study. It is comprised of 156 nodes, 260 edges and has a scale-free topology. Connectivity analysis reveals a significant dominance of intrafamily versus interfamily connections. Most of the receptors within the network are linked to each other by a small number of edges. DRD2, OPRM, ADRB2, AA2AR, AA1R, OPRK, OPRD and GHSR are identified as hubs. In a network representation 10 modules/clusters also appear as a highly interconnected group of nodes. Information on this GPCR network can improve our understanding of molecular integration. GPCR-HetNet has been implemented in Java and is freely available at http://www.iiia.csic.es/~ismel/GPCR-Nets/index.html.

  9. Structural and biochemical characterization of the Cop9 signalosome CSN5/CSN6 heterodimer.

    Directory of Open Access Journals (Sweden)

    Melissa Birol

    Full Text Available The Cop9 signalosome complex (CSN regulates the functional cycle of the major E3 ubiquitin ligase family, the cullin RING E3 ubiquitin ligases (CRLs. Activated CRLs are covalently modified by the ubiquitin-like protein Nedd8 (neural precursor cell expressed developmentally down-regulated protein 8. CSN serves an essential role in myriad cellular processes by reversing this modification through the isopeptidase activity of its CSN5 subunit. CSN5 alone is inactive due to an auto-inhibited conformation of its catalytic domain. Here we report the molecular basis of CSN5 catalytic domain activation and unravel a molecular hierarchy in CSN deneddylation activity. The association of CSN5 and CSN6 MPN (for Mpr1/Pad1 N-terminal domains activates its isopeptidase activity. The CSN5/CSN6 module, however, is inefficient in CRL deneddylation, indicating a requirement of further elements in this reaction such as other CSN subunits. A hybrid molecular model of CSN5/CSN6 provides a structural framework to explain these functional observations. Docking this model into a published CSN electron density map and using distance constraints obtained from cross-linking coupled to mass-spectrometry, we find that the C-termini of the CSN subunits could form a helical bundle in the centre of the structure. They likely play a key scaffolding role in the spatial organization of CSN and precise positioning of the dimeric MPN catalytic core.

  10. Imaging evidence for endothelin ETA/ETB receptor heterodimers in isolated rat mesenteric resistance arteries

    DEFF Research Database (Denmark)

    Kapsokalyvas, Dimitrios; Schiffers, Paul M H; Maij, Nathan;

    2014-01-01

    normal ETA-mediated responses. They were then exposed to 100 nM linear ET-1 (ETB-agonist) labeled with Oregon Green 488 (OG488/L.-ET-1) and/or to 16nM intact ET-1 (ETA/ETB-agonist) labeled with the rhodamine dye TAMRA (TAMRA/ET-1). Two photon laser scanning microscopy (TPLSM) was used for the...... visualization of their binding in the tissue. Fluorescence Lifetime Imaging Microscopy (FLIM) was employed for measurements of the OG488/L.-ET-1 lifetime in the absence and presence of TAMRA/ET-1. KEY FINDINGS: After incubation with the labeled ligands, medial smooth muscle cells (SMCs) were efficiently stained...... and became visible under TPLSM. TAMRA/ET-1 bound to all SMCs whereas OG488/L.-ET-1 stained only groups of SMCs. Interaction of the two receptor subtypes in SMC was investigated in double staining experiments. Fluorescence lifetime of OG488/L.-ET-1 was reduced in the presence of TAMRA/ET-1, which...

  11. Vitamin D receptor-retinoid X receptor heterodimer signaling regulates oligodendrocyte progenitor cell differentiation.

    Science.gov (United States)

    de la Fuente, Alerie Guzman; Errea, Oihana; van Wijngaarden, Peter; Gonzalez, Ginez A; Kerninon, Christophe; Jarjour, Andrew A; Lewis, Hilary J; Jones, Clare A; Nait-Oumesmar, Brahim; Zhao, Chao; Huang, Jeffrey K; ffrench-Constant, Charles; Franklin, Robin J M

    2015-12-01

    The mechanisms regulating differentiation of oligodendrocyte (OLG) progenitor cells (OPCs) into mature OLGs are key to understanding myelination and remyelination. Signaling via the retinoid X receptor γ (RXR-γ) has been shown to be a positive regulator of OPC differentiation. However, the nuclear receptor (NR) binding partner of RXR-γ has not been established. In this study we show that RXR-γ binds to several NRs in OPCs and OLGs, one of which is vitamin D receptor (VDR). Using pharmacological and knockdown approaches we show that RXR-VDR signaling induces OPC differentiation and that VDR agonist vitamin D enhances OPC differentiation. We also show expression of VDR in OLG lineage cells in multiple sclerosis. Our data reveal a role for vitamin D in the regenerative component of demyelinating disease and identify a new target for remyelination medicines. PMID:26644513

  12. ФОРМИРОВАНИЕ ПОЧКИ У АМФИБИЙ В ЛИЧИНОЧНЫЙ ПЕРИОД РАЗВИТИЯ НА ПРИМЕРЕ ЖАБЫ ЗЕЛЕНОЙ (BUFO VIRIDIS LAURENTI, 1768)

    OpenAIRE

    СВЕТАШЕВА Д.Р.; ГРУШКО М.П.

    2014-01-01

    Описываются морфофизиологические особенности формирующегося мезонефроса у личинки зеленой жабы (Bufo viridis Laurenti, 1768). Определено, что изученный орган, наряду с функцией выделения, выполняет функцию кроветворения на протяжении личиночного периода развития. В почке образуются элементы крови всех линий. Основную долю формирующихся элементов крови на протяжении всего личиночного периода развития составляли клетки эритропоэтического ряда, далее, по мере убывания – гранулоцитопоэтические и ...

  13. A serine protease inhibitor from hemolymph of green mussel, Perna viridis

    Digital Repository Service at National Institute of Oceanography (India)

    Khan, M.S.; Goswami, U.; Rojatkar, S.R.; Khan, M.I.

    of different bacteria were mixed and dissolved in 1500ll saline buffer. Animals were injected with 100ll of mixed cocktail of bacteria into the posterior adductor muscles. Hemolymph collection was done by slightly opening the animals with the help of forceps so... that adductor muscle does not break and then hemolymph collected from posterior adductor muscles. Hemolymph was collected into an Alsevier solution and immediately centrifuged at 1000 rpm at * Corresponding author. Tel.: +91 2025902241; fax: +91 2025902648...

  14. Cytogenetic studies in green mussel, Perna viridis (Mytiloida: Pteriomorphia), from West Coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    Iqbal, A.N.M.Z.; Khan, M.S.; Goswami, U.

    injected with 0.002% colchicine in Normal saline into the posterior adductor muscle (Justo et al. 1991) and reared for 24 h in an aquarium containing aerated seawater with 0.002% colchicine (Vitturi et al. 2000). For chromosomal preparation of solid tissues...

  15. The role of the vomeronasal organ in rattlesnake (Crotalus viridis oreganus) predatory behavior.

    Science.gov (United States)

    Alving, W R; Kardong, K V

    1996-01-01

    During predatory behavior, rattlesnakes depend primarily upon thermal and visual cues to initially aim a strike. However, it has been hypothesized that prey-related odors sensed by the vomeronasal system act as releasing stimuli of the strike and that such vomodors are primary stimuli during poststrike trailing and swallowing of the envenomated rodent. To test this, northern Pacific rattlesnakes were rendered avomic by bilateral lesions of the vomeronasal nerves, and their vomic and avomic predatory behaviors were compared. Avomic rattlesnakes exhibited fewer strikes and complete elimination of trailing and swallowing behavior. These results support the hypothesis that vomodors sensed via the vomeronasal organ are capable of acting as releasing stimuli of selected rattlesnake predatory behaviors. Sensory input via the vomeronasal organ is important during prestrike/strike behavior, and it is a major route of sensory input during poststrike trailing and ingestion of envenomated prey.

  16. Proximate biochemical composition and caloric potential in the raft-grown green mussel Perna viridis

    Digital Repository Service at National Institute of Oceanography (India)

    Rivonker, C.U.; Parulekar, A.H.

    The biochemical components of the mussel tissue, cultured on the raft were estimated. The range of variation in the content of moisture, protein, carbohydrates, lipid, organic carbon and ash were 66.8-90.1; 46.2-67.4; 11.7-18.6; 2.9-7.4; 19...

  17. Biomarkers of petroleum contamination in the digestive gland of Perna viridis (L.)

    Digital Repository Service at National Institute of Oceanography (India)

    Verlecar, X.N.; Jena, K.B.; Desai, S.R.; Das, P.B.; Chainy, G.B.N.

    , glutathione reductase, glutathione-S-transferase, reduced glutathione, and ascorbic acid in WAF-exposed specimens signify the importance of antioxidants in protecting the cell against the oxidative damage arising from petroleum contamination. The responses...

  18. Burrow ventilation and associated porewater irrigation by the polychaete Marenzelleria viridis

    DEFF Research Database (Denmark)

    Quintana, Cintia Organo; Hansen, Tanja; Delefosse, Matthieu;

    2011-01-01

    presented muscular pumping in time averaged rates of 0.15 ml min−1. Oxygen needle electrodes positioned above the burrow openings revealed that muscular undulation of the worm body pumps anoxic water out of the burrow. On the other hand, microscope observations of the animal showed that ventilation...

  19. ETUDE THEORIQUE ET EXPERIMENTALE DU SECHAGE SOLAIRE DES FEUILLES DE LA MENTHE VERTE (MENTHA VIRIDIS).

    OpenAIRE

    BOUMEDIENE, TOUATI

    2014-01-01

    LES PLANTES MÉDICINALES ET AROMATIQUES ET EN PARTICULIER LES FEUILLES DE LA MENTHE VERTE ONT BEAUCOUP D'IMPORTANCE POUR LA PHARMACOPÉE, LA PARFUMERIE ,LA CONFISERIE ET LA LIQUORISTE RIE . CE TRAVAIL ENTRE DANS LE CADRE DE LA VALORISATION DE CETTE PLANTE PRODUITE EN GRANDE QUANTITÉ DANS LE SUD ET LE SUD-OUEST ALGÉRIEN .IL S'AGIT RÉÉTUDIER LE SÉCHAGE DE CETTE PLANTE ET DE DÉVELOPPER L'UTILISATION DE L’ÉNERGIE POUR SE'CHER LA MENTHE VIRIDES.

  20. Chloride transport in toad skin (Bufo viridis). The effect of salt adaptation

    DEFF Research Database (Denmark)

    Katz, U; Larsen, Erik Hviid

    1984-01-01

    ). for V = -50 mV the transepithelial Cl- conductance calculated from isotope flux measurements was 2.5 +/- 0.3 mS cm-2, N = 10. When the skin was clamped at + 50 mV the net flux of Cl- was reversed, but Cl- conductance was only 0.3 +/- 0.1 mScm-2. Flux ratio analysis indicated that the potential...

  1. Growth parameters in the cultured green mussel Perna viridis L. from the Zuari Estuary, Goa

    Digital Repository Service at National Institute of Oceanography (India)

    Rivonker, C.U.; Sreepada, R.A.; Parulekar, A.H.

    and weight computEd. by applying Von Bertalanffy's equation did not show significant deviation from the observed values. Specific growth rate (SGR) was calculated, by using the values of shell-length, varied from 0.74 to 138.52%. SGR maxima was observed...

  2. DNA damage in male gonad cells of Green mussel (Perna viridis) upon exposure to tobacco products

    Digital Repository Service at National Institute of Oceanography (India)

    Nagarajappa; Ganguly, A.; Goswami, U.

    . Keywords: Genotoxicity, DNA damage, Comet assay, Cigar tobacco extracts, H2O2 Introduction Marine pollution is a global problem and can arise from natural occurrences as well as human activities, resource uses and interventions..., 781, 56-63. Nacci, D.E., Cayula, S., and Eugene, J., (1996). Detection of DNA damage in individual cells from marine organisms using the single gel assay. Aquatic Toxicol., 35,197?219. Ostling, O., and Johanson, K.J., (1984). Microelectrophoretic...

  3. Extract of Indian green mussel, Perna viridis (L.) shows inhibition of blood capillary formation in vitro

    Digital Repository Service at National Institute of Oceanography (India)

    Mirshahi, M.; Mirshahi, P.; Negro, S.; Soria, J.; Sreekumar, P.K.; Kotnala, S.; Therwath, A.; Chatterji, A.

    copy of CVISION PDFCompressor 36 Pertanika J. Trop. Agric. Sci. Vol. 32(1) 2009 Massoud Mirshahi et al. MATERIALS AND METHODS Cells Cultures Human microvascular endothelial cells (HMEC) (Golestaneh et al., 2001), were cultured in endothelial basal.... The human microvascular endothelial cells (HMEC) line was continuously propagated in 75 cm culture dishes, containing RPMI 1640 supplemented with glutamine (1 mM), fetal calf serum (10%), penicillin (100 U/ml), streptomycin (100 U/ml) and incubated...

  4. Tumours of reptiles 4. Multiple osteomas in the lizard Laceria viridis

    NARCIS (Netherlands)

    Stolk, A.

    1958-01-01

    Whereas in fishes several osteomas (Bell, 1793; Gervais, 1875; Bland-Sutton, 1885 ; Plehn, 1906 ; Schroeders, 1908 ; Fiebiger, 1909 ; Williamson, 1913 ; Beatti, 1916 ; Kazama, 1924 ; Sagawa, 1925; Williams, 1929; Takahashi, 1929; Thomas, 1932, 1933; Lucké and Schlumberger, not published, see the pub

  5. Interaction of Temperature and Photoperiod Increases Growth and Oil Content in the Marine Microalgae Dunaliella viridis

    OpenAIRE

    Soundarya Srirangan; Marie-Laure Sauer; Brian Howard; Mia Dvora; Jacob Dums; Patrick Backman; Heike Sederoff

    2015-01-01

    Eukaryotic marine microalgae like Dunaliella spp. have great potential as a feedstock for liquid transportation fuels because they grow fast and can accumulate high levels of triacylgycerides with little need for fresh water or land. Their growth rates vary between species and are dependent on environmental conditions. The cell cycle, starch and triacylglycerol accumulation are controlled by the diurnal light:dark cycle. Storage compounds like starch and triacylglycerol accumulate in the ligh...

  6. Structures of self-assembled amphiphilic peptide-heterodimers: effects of concentration, pH, temperature and ionic strength

    KAUST Repository

    Luo, Zhongli

    2010-01-01

    The amphiphilic double-tail peptides AXG were studied regarding secondary structure and self-assembly in aqueous solution. The two tails A = Ala 6 and G = Gly6 are connected by a central pair X of hydrophilic residues, X being two aspartic acids in ADG, two lysines in AKG and two arginines in ARG. The peptide AD (Ala6Asp) served as a single-tail reference. The secondary structure of the four peptides was characterized by circular dichroism spectroscopy under a wide range of peptide concentrations (0.01-0.8 mM), temperatures (20-98 °C), pHs (4-9.5) and ionic strengths. In salt-free water both ADG and AD form a β-sheet type of structure at high concentration, low pH and low temperature, in a peptide-peptide driven assembly of individual peptides. The transition has a two-state character for ADG but not for AD, which indicates that the added tail in ADG makes the assembly more cooperative. By comparison the secondary structures of AKG and ARG are comparatively stable over the large range of conditions covered. According to dynamic light scattering the two-tail peptides form supra-molecular aggregates in water, but high-resolution AFM-imaging indicate that ordered (self-assembled) structures are only formed when salt (0.1 M NaCl) is added. Since the CD-studies indicate that the NaCl has only a minor effect on the peptide secondary structure we propose that the main role of the added salt is to screen the electrostatic repulsion between the peptide building blocks. According to the AFM images ADG and AKG support a correlation between nanofibers and a β-sheet or unordered secondary structure, whereas ARG forms fibers in spite of lacking β-sheet structure. Since the AKG and ARG double-tail peptides self-assemble into distinct nanostructures while their secondary structures are resistant to environment factors, these new peptides show potential as robust building blocks for nano-materials in various medical and nanobiotechnical applications. © 2010 The Royal Society of Chemistry.

  7. THE INFLUENCE OF HLA-DQ2 HETERODIMERS ON THE CLINICAL FEATURES AND LABORATORY OF PATIENTS WITH CELIAC DISEASE.

    Science.gov (United States)

    Akar, H Haluk; Yıldız, Mikdat; Sevinc, Eylem; Sokucu, Semra

    2015-12-01

    Antecedentes y objetivo: el marcador genético esencial relacionado con la enfermedad celíaca (CD) es la molécula HLA-DQ2 codificada por los genes DQA1*0501 y DQB1*0201. El objetivo de este estudio es evaluar el efecto de estos alelos en las características clínicas, serológicas e histológicas de los niños turcos que tienen la enfermedad celíaca. Material y métodos: nosotros hemos dividido los 36 pacientes celíacos en 4 grupos de acuerdo con su genotipo HLA-DQ2 basado en la presencia o la ausencia de los alelos DQA1*0501 y DQB1*0201. Grupo 1: 4 pacientes que no tenían los alelos HLA-DQ2A1*0501 y DQ2B1*0201; Grupo 2: 12 pacientes que tenían por lo menos uno de estos alelos con un estado heterocigoto; Grupo 3: 12 pacientes que tenián ambos alelos con un estado heterocigoto; Grupo 4: 8 pacientes que tenían ambos alelos con un estado heterocigoto. Nosotros hemos comparado los grupos de acuerdo con las características clínicas, serológicas, histológicas y bioquímicas. Resultados: no había significación estadística entre los grupos por edad, índice de masa corporal, (IMC), peso por altura y aparición de síntomas. Sin embargo, en los grupos 3 y 4 comparados con los grupos 1 y 2 se observaron unas diferencias menores en IMC y anticuerpos antigliadina (AGA), sin una significación estadística. De acuerdo con los antiendomisios (EMA), la puntuación Marsh, las presentaciones clínicas y los valores hematológicos y bioquímicos, no había una significación estadística entre los grupos sin estreñimiento respecto a los valores más altos observados en el grupo 4 sin significación estadística. Se detectó hipertiroidismo en un paciente (25%) del grupo de carga genética más baja (grupo 1) con significación estadística (p < 0,046). El resultado: en este estudio, las pequeñas diferencias que se encontraton entre los grupos no dilucidaron el impacto de los alelos HLA-DQ2 A1*0501 y DQ2B1*0201 en las manifectaciones clínicas, serológicas y de laboratorio de los pacientes celíacos. Se necesitan nuevos estudios para evaluar el efecto de los alelos HLA y otros polimorfismos genéticos en los resultados sobre la enfermedad celíaca en los niños.

  8. Drosophila molting neurohormone bursicon is a heterodimer and the natural agonist of the orphan receptor DLGR2

    DEFF Research Database (Denmark)

    Mendive, Fernando M; Van Loy, Tom; Claeysen, Sylvie;

    2005-01-01

    Bursicon is a neurohumoral agent responsible for tanning and hardening of the cuticle and expansion of the wings during the final phase of insect metamorphosis. Although the hormonal activity was described more than 40 years ago, the molecular nature of bursicon has remained elusive. We identify...

  9. Proximity-Directed Labeling Reveals a New Rapamycin-Induced Heterodimer of FKBP25 and FRB in Live Cells

    Science.gov (United States)

    2016-01-01

    Mammalian target of rapamycin (mTOR) signaling is a core pathway in cellular metabolism, and control of the mTOR pathway by rapamycin shows potential for the treatment of metabolic diseases. In this study, we employed a new proximity biotin-labeling method using promiscuous biotin ligase (pBirA) to identify unknown elements in the rapamycin-induced interactome on the FK506-rapamycin binding (FRB) domain in living cells. FKBP25 showed the strongest biotin labeling by FRB–pBirA in the presence of rapamycin. Immunoprecipitation and immunofluorescence experiments confirmed that endogenous FKBP25 has a rapamycin-induced physical interaction with the FRB domain. Furthermore, the crystal structure of the ternary complex of FRB–rapamycin–FKBP25 was determined at 1.67-Å resolution. In this crystal structure we found that the conformational changes of FRB generate a hole where there is a methionine-rich space, and covalent metalloid coordination was observed at C2085 of FRB located at the bottom of the hole. Our results imply that FKBP25 might have a unique physiological role related to metallomics in mTOR signaling. PMID:27610411

  10. Proximity-Directed Labeling Reveals a New Rapamycin-Induced Heterodimer of FKBP25 and FRB in Live Cells.

    Science.gov (United States)

    Lee, Song-Yi; Lee, Hakbong; Lee, Hye-Kyeong; Lee, Seung-Won; Ha, Sung Chul; Kwon, Taejoon; Seo, Jeong Kon; Lee, Changwook; Rhee, Hyun-Woo

    2016-08-24

    Mammalian target of rapamycin (mTOR) signaling is a core pathway in cellular metabolism, and control of the mTOR pathway by rapamycin shows potential for the treatment of metabolic diseases. In this study, we employed a new proximity biotin-labeling method using promiscuous biotin ligase (pBirA) to identify unknown elements in the rapamycin-induced interactome on the FK506-rapamycin binding (FRB) domain in living cells. FKBP25 showed the strongest biotin labeling by FRB-pBirA in the presence of rapamycin. Immunoprecipitation and immunofluorescence experiments confirmed that endogenous FKBP25 has a rapamycin-induced physical interaction with the FRB domain. Furthermore, the crystal structure of the ternary complex of FRB-rapamycin-FKBP25 was determined at 1.67-Å resolution. In this crystal structure we found that the conformational changes of FRB generate a hole where there is a methionine-rich space, and covalent metalloid coordination was observed at C2085 of FRB located at the bottom of the hole. Our results imply that FKBP25 might have a unique physiological role related to metallomics in mTOR signaling. PMID:27610411

  11. Construction and Characterization of a Dunaliella viridis Bacterial Artificial Chromosome Library%盐藻(Dunaliella viridis)细菌人工染色体文库的构建和鉴定

    Institute of Scientific and Technical Information of China (English)

    孟祥宗; 杨晓武; 管祯玮; 张男; 许政暟; 宋任涛

    2007-01-01

    盐藻具有极强的耐盐能力,是研究植物耐盐机制的模式系统.为了对其耐盐机制进行深入的研究,以pCC1BAC为载体,构建了盐藻的细菌人工染色体(BAC)文库.该文库共有9 216个转化子,插入片段平均长度为55kb,以单克隆形式保藏在96块96孔板中,并建立了四维PCR基因筛选体系,可以通过4轮PCR快速筛选获得阳性单克隆.根据本实验室分离到的两个盐藻基因的cDNA序列(DvSPT2和DvTPSP)设计引物,通过PCR从该文库中各筛到4个阳性BAC克隆,说明该文库能有效用于分离盐藻基因的基因组序列,据此推测该文库约覆盖4倍盐藻基因组序列.

  12. Disseminated Mycosis in Veiled Chameleons (Chamaeleo calyptratus) Caused by Chamaeleomyces granulomatis, a New Fungus Related to Paecilomyces viridis

    DEFF Research Database (Denmark)

    Sigler, Lynne; Gibas, Connie Fe C.; Kokotovic, Branko;

    2010-01-01

    An outbreak of disseminated granulomatous disease occurred in a group of veiled chameleons (Chamaeleo calyptratus) in a zoo collection. An adult female and six offspring developed large granulomas in multiple organs and were euthanized. At necropsy, roughly spherical yellow-to-white nodules 1 to 3...

  13. Absorption of Cu/sup + +/ by long-term cultures of Dunaliella salina, D. tertiolecta, and D. viridis

    Energy Technology Data Exchange (ETDEWEB)

    Lustigman, B.; Korky, J.; Zabady, A.; McCormick, J.M.

    1985-09-01

    By means of atomic absorption analysis, the authors measured the effect of salinity on the absorption of copper. They used long term cultures of Dunaliella in order to determine if alterations in plasmalemma permeability occur as a result of adaptation to different osmotic conditions. Since copper appears to affect the mechanisms involved in osmotic resistance with Dunaliella, they hoped to elucidate some of the characteristics of permeability.

  14. Feminizing chicks: a model for avian sex determination based on titration of Hint enzyme activity and the predicted structure of an Asw-Hint heterodimer

    OpenAIRE

    Pace, Helen C.; Brenner, Charles

    2003-01-01

    Background In birds and some lizards, females are heterogametic with a ZW karyotype, while males are ZZ homogametes. The molecular basis for sexual differentiation in birds is unknown: arguments exist for doses of Z masculinizing chicks and for W information feminizing. ASW was identified as a tandemly repeated gene conserved on avian W chromosomes that is expressed in early female development and appears to be an inactive form of avian Z-encoded HINT. Hint is a dimeric enzyme that hydrolyzes...

  15. A Pathway Involving Farnesoid X Receptor and Small Heterodimer Partner Positively Regulates Hepatic Sirtuin 1 Levels via MicroRNA-34a Inhibition*

    OpenAIRE

    Lee, Jiyoung; Padhye, Amruta; Sharma, Abhilasha; Song, Guisheng; Miao, Ji; Mo, Yin-Yuan; Wang, Li; Kemper, Jongsook Kim

    2010-01-01

    Sirtuin 1 (SIRT1) is a NAD-dependent deacetylase that is critically involved in diverse cellular processes including metabolic disease, cancer, and possibly aging. Despite extensive studies on SIRT1 function, how SIRT1 levels are regulated remains relatively unknown. Here, we report that the nuclear bile acid receptor farnesoid X receptor (FXR) inhibits microRNA-34a (miR-34a) in the liver, which results in a positive regulation of SIRT1 levels. Activation of FXR by the synthetic agonist GW406...

  16. Conicasterol E, a Small Heterodimer Partner Sparing Farnesoid X Receptor Modulator Endowed with a Pregnane X Receptor Agonistic Activity, from the Marine Sponge Theonella swinhoei

    OpenAIRE

    V. Sepe; Ummarino, R.; D'Auria, M.V.; Chini, M.G.; G. Bifulco; Renga, B.; D' Amore, C.; Debitus, Cécile; Fiorucci, S.; Zampella, A.

    2012-01-01

    We report the isolation and pharmacological characterization of conicasterol E isolated from the marine sponge Theonella swinhoei. Pharmacological characterization of this steroid in comparison to CDCA, a natural FXR ligand, and 6-ECDCA, a synthetic FXR agonist generated by an improved synthetic strategy, and rifaximin, a potent PXR agonist, demonstrated that conicasterol E is an FXR modulator endowed with PXR agonistic activity. Conicasterol E induces the expression of genes involved in bile...

  17. Placenta growth factor-1 antagonizes VEGF-induced angiogenesis and tumor growth by the formation of functionally inactive PIGF-1/VEGF heterodimers

    DEFF Research Database (Denmark)

    Eriksson, A.; Cao, R.; Pawliuk, R.;

    2002-01-01

    , the biological function of its related homolog, placenta growth factor (PlGF), is poorly understood. Here we demonstrate that PlGF-1, an alternatively spliced isoform of the PlGF gene, antagonizes VEGF-induced angiogenesis when both factors are coexpressed in murine fibrosarcoma cells. Overexpression of PlGF-1...

  18. Changes in Binding Motif of Protonated Heterodimers Containing Valine and Amines Investigated Using IRMPD Spectroscopy between 800 and 3700 cm(-1) and Theory

    NARCIS (Netherlands)

    O' Brien, J. T.; Prell, J. S.; Steill, J. D.; Oomens, J.; Williams, E. R.

    2009-01-01

    Proton-bound dimers consisting of valine and basic primary and secondary amines of varying gas-phase basicity (GB) were investigated using infrared multiple photon dissociation (IRMPD) spectroscopy between 800 and 3700 cm(-1), collisionally activated dissociation, and theory. The low-energy dissocia

  19. Mechanisms for dominance: Adh heterodimer formation in heterozygotes between ENU or x-ray induced null alleles and normal alleles in drosophila melanogaster

    Energy Technology Data Exchange (ETDEWEB)

    Jiang, J.C.; Lee, W.R.; Chang, S.H.; Silverman, H. (Louisiana State Univ., Baton Rouge (United States))

    1992-01-01

    To study mechanisms for dominance of phenotype, eight ENU- and four x-ray-induced mutations at the alcohol dehydrogenase (Adh) locus were analyzed for partial dominance in their interaction with normal alleles. All ENU and one of the x-ray mutations were single base substitutions; the other three x-ray mutations were 9-21 base deletions. All but one of the 12 mutant alleles were selected for this study because they produced detectable mutant polypeptides, but seven of the 11 producing a peptide could not form dimers with the normal peptide and the enzyme activity of heterozygotes was about half that of normal homozygotes. Four mutations formed dimers with a decreased catalytic efficiency and two of these were near the limit of detectability; these two also inhibited the formation of normal homodimers. The mutant alleles therefore show multiple mechanisms leading to partial enzyme expression in heterozygotes and a wide range of dominance ranging from almost complete recessive to nearly dominant. All amino acid changes in mutant peptides that form dimers are located between amino acids 182 and 194, so this region is not critical for dimerization. It may, however, be an important surface domain for catalyzation. 34 refs., 8 figs., 2 tabs.

  20. Excitonic Heterodimer Formation in an HIV-1 Oligonucleotide Labeled with a Donor-Acceptor Pair Used for Fluorescence Resonance Energy Transfer

    OpenAIRE

    Bernacchi, Serena; Piémont, Etienne; Potier, Noelle; Van Dorsselaer, Alain; Mély, Yves

    2003-01-01

    In this study, we investigated the absorbance and fluorescence properties of cTAR, the complementary DNA sequence of the transactivation response element of the HIV-1 genome, doubly end-labeled by different dyes, 5(and 6)-carboxyfluorescein (Fl) and 5(and 6)-carboxytetramethylrhodamine (TMR), frequently used in fluorescence resonance energy transfer (FRET) studies. This oligonucleotide forms a stable stem-loop structure. The absorption spectrum of this species clearly differed from that of a ...

  1. Pan-HER - an antibody mixture targeting EGFR, HER2, and HER3 abrogates preformed and ligand-induced EGFR homo- and heterodimers

    DEFF Research Database (Denmark)

    Ellebaek, Sofie; Pedersen, Susanne Brix; Grandal, Michael;

    2016-01-01

    with Pan-HER were investigated by in situ proximity ligation assay and co-immunoprecipitation, demonstrating that Pan-HER and the EGFR-targeting mAb mixture efficiently down-regulate basal EGFR homo- and heterodimerization in two tested cell lines, whereas single mAbs had limited effects. Pan...

  2. The light-harvesting complexes of higher-plant Photosystem I : Lhca1/4 and Lhca2/3 form two red-emitting heterodimers

    NARCIS (Netherlands)

    Wientjes, Emilie; Croce, Roberta

    2011-01-01

    The outer antenna of higher-plant PSI (Photosystem I) is composed of four complexes [Lhc (light-harvesting complex) al-Lhca4] belonging to the light-harvesting protein family. Difficulties in their purification have so far prevented the determination of their properties and most of the knowledge abo

  3. Pan-HER-An antibody mixture targeting EGFR, HER2 and HER3 abrogates preformed and ligand-induced EGFR homo- and heterodimers.

    Science.gov (United States)

    Ellebaek, Sofie; Brix, Susanne; Grandal, Michael; Lantto, Johan; Horak, Ivan D; Kragh, Michael; Poulsen, Thomas Tuxen

    2016-11-01

    The human epidermal growth factor receptor (HER)-family is involved in development of many epithelial cancers. Therefore, HER-family members constitute important targets for anti-cancer therapeutics such as monoclonal antibodies (mAbs). A limitation to the success of single HER-targeting mAbs is development of acquired resistance through mechanisms such as alterted receptor dimerization patterns and dependencies. Pan-HER is a mixture of six mAbs simultaneously targeting epidermal growth factor receptor (EGFR), HER2 and HER3 with two mAbs against each receptor. Pan-HER has previously demonstrated broader efficacy than targeting single or dual receptor combinations also in resistant settings. In light of this broad efficacy, we decided to investigate the effect of Pan-HER compared with single HER-targeting with single and dual mAbs on HER-family cross-talk and dimerization focusing on EGFR. The effect of Pan-HER on cell proliferation and HER-family receptor degradation was superior to treatment with single mAbs targeting either single receptor, and similar to targeting a single receptor with two non-overlapping antibodies. Furthermore, changes in EGFR-dimerization patterns after treatment with Pan-HER were investigated by in situ proximity ligation assay and co-immunoprecipitation, demonstrating that Pan-HER and the EGFR-targeting mAb mixture efficiently down-regulate basal EGFR homo- and heterodimerization in two tested cell lines, whereas single mAbs had limited effects. Pan-HER and the EGFR-targeting mAb mixture also blocked EGF-binding and thereby ligand-induced changes in EGFR-dimerization levels. These results suggest that Pan-HER reduces the cellular capability to switch HER-dependency and dimerization pattern in response to treatment and thus hold promise for future clinical development of Pan-HER in resistant settings.

  4. Rexinoid Bexarotene Modulates Triglyceride but not Cholesterol Metabolism via Gene-Specific Permissivity of the RXR/LXR Heterodimer in the Liver

    DEFF Research Database (Denmark)

    Lalloyer, Fanny; Pedersen, Thomas Åskov; Gross, Barbara;

    2009-01-01

    OBJECTIVE: Bexarotene (Targretin) is a clinically used antitumoral agent which exerts its action through binding to and activation of the retinoid-X-receptor (RXR). The most frequent side-effect of bexarotene administration is an increase in plasma triglycerides, an independent risk factor...

  5. Solution study of the Escherichia coli DNA polymerase III clamp loader reveals the location of the dynamic ψχ heterodimer

    Directory of Open Access Journals (Sweden)

    Farzaneh Tondnevis

    2015-09-01

    Full Text Available Several X-ray crystal structures of the E. coli core clamp loader containing the five core (δ′, δ, and three truncated γ subunits have been determined, but they lack the ψ and χ subunits. We report the first solution structure of the complete seven-subunit clamp loader complex using small angle X-ray scattering. This structure not only provides information about the location of the χ and ψ subunits but also provides a model of the dynamic nature of the clamp loader complex.

  6. The proteolytic fragments of the Alzheimer's disease-associated presenilin-1 form heterodimers and occur as a 100-150-kDa molecular mass complex.

    Science.gov (United States)

    Capell, A; Grünberg, J; Pesold, B; Diehlmann, A; Citron, M; Nixon, R; Beyreuther, K; Selkoe, D J; Haass, C

    1998-02-01

    Mutations in the presenilin (PS) genes are linked to early onset familial Alzheimer's disease (FAD). PS-1 proteins are proteolytically processed by an unknown protease to two stable fragments of approximately 30 kDa (N-terminal fragment (NTF)) and approximately 20 kDa (C-terminal fragment (CTF)) (Thinakaran, G., Borchelt, D. R., Lee, M. K., Slunt, H. H., Spitzer, L., Kim, G., Ratovitsky, T., Davenport, F., Nordstedt, C., Seeger, M., Hardy, J., Levey, A. I., Gandy, S. E., Jenkins, N. A., Copeland, N. G., Price, D. L., and Sisodia, S. S. (1996) Neuron 17, 181-190). Here we show that the CTF and NTF of PS-1 bind to each other. Fractionating proteins from 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonic acid-extracted membrane preparations by velocity sedimentation reveal a high molecular mass SDS and Triton X-100-sensitive complex of approximately 100-150 kDa. To prove if both proteolytic fragments of PS-1 are bound to the same complex, we performed co-immunoprecipitations using multiple antibodies specific to the CTF and NTF of PS-1. These experiments revealed that both fragments of PS-1 occur as a tightly bound non-covalent complex. Upon overexpression, unclipped wild type PS-1 sediments at a lower molecular weight in glycerol velocity gradients than the endogenous fragments. In contrast, the non-cleavable, FAD-associated PS-1 Deltaexon 9 sediments at a molecular weight similar to that observed for the endogenous proteolytic fragments. This result may indicate that the Deltaexon 9 mutation generates a mutant protein that exhibits biophysical properties similar to the naturally occurring PS-1 fragments. This could explain the surprising finding that the Deltaexon 9 mutation is functionally active, although it cannot be proteolytically processed (Baumeister, R., Leimer, U., Zweckbronner, I., Jakubek, C., Grünberg, J., and Haass, C. (1997) Genes & Function 1, 149-159; Levitan, D., Doyle, T., Brousseau, D., Lee, M., Thinakaran, G., Slunt, H., Sisodia, S., and Greenwald, I. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 14940-14944). Formation of a high molecular weight complex of PS-1 composed of both endogenous PS-1 fragments may also explain the recent finding that FAD-associated mutations within the N-terminal portion of PS-1 result in the hyperaccumulation not only of the NTF but also of the CTF (Lee, M. K., Borchelt, D. R., Kim, G., Thinakaran, G., Slunt, H. H., Ratovitski, T., Martin, L. J., Kittur, A., Gandy, S., Levey, A. I., Jenkins, N., Copeland, N., Price, D. L., and Sisodia, S. S. (1997) Nat. Med. 3, 756-760). Moreover, these results provide a model to understand the highly regulated expression and processing of PS proteins. PMID:9452432

  7. Relation between cooperative effects in cyclic water, methanol/water, and methanol trimers and hydrogen bonds in methanol/water, ethanol/water, and dimethylether/water heterodimers

    Science.gov (United States)

    Masella, Michel; Flament, Jean Pierre

    1998-05-01

    Ab initio calculations at the MP2 level have been performed on water, methanol/water, ethanol/water, and dimethylether/water dimers and on water, methanol/water, and methanol cyclic trimers. Several properties of their hydrogen bonds have been investigated, such as interoxygen distances, O-H bond lengths, binding energies, electronic densities at hydrogen bond (HB) critical points and OH stretch vibrational frequencies. Results exhibit HB enhancements for dimers where the acceptor molecule corresponds to water (HDA dimers) as compared to dimers where the donor is water (HDD dimers). In particular, HB reinforcement depends on the number of alkyl groups bonded to the donor oxygen. For trimers, a comparison among their HB properties and those of dimers shows that HB reinforcements (as compared to isolated dimers) occurring in trimers correlate with HB reinforcements observed in (HDA dimers (as compared to (HDDs). In particular, HB properties of the cyclic water trimer are close to those of alcohol/water HDA dimers, and for the methanol cyclic trimer to that of the dimethylether/water HDA dimer. All of these results agree with an orbital interpretation of hydrogen bonding in terms of charge transfer from donor lone pairs to acceptor antibond σOH*, even if all of the HB properties in cyclic trimers may not be explained from this approach.

  8. Pan-HER-An antibody mixture targeting EGFR, HER2 and HER3 abrogates preformed and ligand-induced EGFR homo- and heterodimers.

    Science.gov (United States)

    Ellebaek, Sofie; Brix, Susanne; Grandal, Michael; Lantto, Johan; Horak, Ivan D; Kragh, Michael; Poulsen, Thomas Tuxen

    2016-11-01

    The human epidermal growth factor receptor (HER)-family is involved in development of many epithelial cancers. Therefore, HER-family members constitute important targets for anti-cancer therapeutics such as monoclonal antibodies (mAbs). A limitation to the success of single HER-targeting mAbs is development of acquired resistance through mechanisms such as alterted receptor dimerization patterns and dependencies. Pan-HER is a mixture of six mAbs simultaneously targeting epidermal growth factor receptor (EGFR), HER2 and HER3 with two mAbs against each receptor. Pan-HER has previously demonstrated broader efficacy than targeting single or dual receptor combinations also in resistant settings. In light of this broad efficacy, we decided to investigate the effect of Pan-HER compared with single HER-targeting with single and dual mAbs on HER-family cross-talk and dimerization focusing on EGFR. The effect of Pan-HER on cell proliferation and HER-family receptor degradation was superior to treatment with single mAbs targeting either single receptor, and similar to targeting a single receptor with two non-overlapping antibodies. Furthermore, changes in EGFR-dimerization patterns after treatment with Pan-HER were investigated by in situ proximity ligation assay and co-immunoprecipitation, demonstrating that Pan-HER and the EGFR-targeting mAb mixture efficiently down-regulate basal EGFR homo- and heterodimerization in two tested cell lines, whereas single mAbs had limited effects. Pan-HER and the EGFR-targeting mAb mixture also blocked EGF-binding and thereby ligand-induced changes in EGFR-dimerization levels. These results suggest that Pan-HER reduces the cellular capability to switch HER-dependency and dimerization pattern in response to treatment and thus hold promise for future clinical development of Pan-HER in resistant settings. PMID:27342948

  9. Molecular modeling of the heterodimer of human CFTR’s nucleotide-binding domains using a protein–protein docking approach

    OpenAIRE

    Huang, Sheng-You; Bolser, Diana; Liu, Hao-Yang; Hwang, Tzyh-Chang; Zou, Xiaoqin

    2008-01-01

    We have presented a new protein–protein docking approach to model heterodimeric structures based on the conformations of the monomeric units. The conventional modeling method relies on superimposing two monomeric structures onto the crystal structure of a homologous protein dimer. The resulting structure may exhibit severe backbone clashes at the dimeric interface depending on the backbone dissimilarity between the target and template proteins. Our method overcomes the backbone clashing probl...

  10. HrpG and HrpV proteins from the Type III secretion system of Erwinia amylovora form a stable heterodimer.

    Science.gov (United States)

    Gazi, Anastasia D; Charova, Spyridoula; Aivaliotis, Michalis; Panopoulos, Nicholas J; Kokkinidis, Michael

    2015-01-01

    Bacterial type III secretion systems (T3SSs) are specialized multicomponent nanomachines that mediate the transport of proteins either to extracellular locations or directly into eukaryotic host cell cytoplasm. Erwinia amylovora, the main agent of rosaceous plants fireblight disease, employs an Hrp/Hrc1 T3SS to accomplish its pathogenesis. The regulatory network that controls the activation of this T3SS is largely unknown in E. amylovora. However, in Pseudomonas syringae pathovars, the HrpG/HrpV complex has been shown to directly regulate the activity of transcription factor HrpS and consequently the upregulation of the Hrp/Hrc1 T3SS related genes. In this work, we report the successful recombinant production and purification of a stable E. amylovora HrpG/HrpV complex, using pPROpET, a bicistronic expression vector. Furthermore, we present the first solution structure of this complex based on small-angle X-ray scattering data.

  11. Comparative effects of the blue green algae Nodularia spumigena and a lysed extract on detoxification and antioxidant enzymes in the green lipped mussel (Perna viridis)

    Energy Technology Data Exchange (ETDEWEB)

    Davies, Warren R. [Department of Biotechnology and Environmental Biology, RMIT University, Melbourne, Victoria (Australia)]. E-mail: warren.davies@rmit.edu.au; Siu, William H.L. [Department of Biology and Chemistry, City University of Hong Kong, Kowloon, Hong Kong (China); Jack, Ralph W. [Department of Microbiology, University of Otago, Dunedin (New Zealand); Wu, Rudolf S.S. [Department of Biology and Chemistry, City University of Hong Kong, Kowloon, Hong Kong (China); Lam, Paul K.S. [Department of Biology and Chemistry, City University of Hong Kong, Kowloon, Hong Kong (China); Nugegoda, Dayanthi [Department of Biotechnology and Environmental Biology, RMIT University, Melbourne, Victoria (Australia)

    2005-07-01

    Nodularia spumigena periodically proliferates to cause toxic algal blooms with some aquatic animals enduring and consuming high densities of the blue green algae or toxic lysis. N. spumigena contains toxic compounds such as nodularin and lipopolysaccharides. This current work investigates physiological effects of exposure from bloom conditions of N. spumigena cells and a post-bloom lysis. Biochemical and antioxidative biomarkers were comparatively studied over an acute 3-day exposure. In general, a post-bloom N. spumigena lysis caused opposite physiological responses to bloom densities of N. spumigena. Specifically, increases in glutathione (GSH) and glutathione peroxidase (GPx) and decreases in glutathione S-transferase (GST) were observed from the N. spumigena lysis. In contrast, N. spumigena cell densities decreased GSH and increased GST and lipid peroxidation (LPO) in mussels. Findings also suggest that at different stages of a toxic bloom, exposure may result in toxic stress to specific organs in the mussel.

  12. Comparative effects of the blue green algae Nodularia spumigena and a lysed extract on detoxification and antioxidant enzymes in the green lipped mussel (Perna viridis).

    Science.gov (United States)

    Davies, Warren R; Siu, William H L; Jack, Ralph W; Wu, Rudolf S S; Lam, Paul K S; Nugegoda, Dayanthi

    2005-01-01

    Nodularia spumigena periodically proliferates to cause toxic algal blooms with some aquatic animals enduring and consuming high densities of the blue green algae or toxic lysis. N. spumigena contains toxic compounds such as nodularin and lipopolysaccharides. This current work investigates physiological effects of exposure from bloom conditions of N. spumigena cells and a post-bloom lysis. Biochemical and antioxidative biomarkers were comparatively studied over an acute 3-day exposure. In general, a post-bloom N. spumigena lysis caused opposite physiological responses to bloom densities of N. spumigena. Specifically, increases in glutathione (GSH) and glutathione peroxidase (GPx) and decreases in glutathione S-transferase (GST) were observed from the N. spumigena lysis. In contrast, N. spumigena cell densities decreased GSH and increased GST and lipid peroxidation (LPO) in mussels. Findings also suggest that at different stages of a toxic bloom, exposure may result in toxic stress to specific organs in the mussel. PMID:16291202

  13. Seasonal variation of major elements (Ca, Mg) and trace metals (Fe, Cu, Zn, Mn) and cultured mussel Perna viridis L. and seawater in the Dona Paula Bay, Goa

    Digital Repository Service at National Institute of Oceanography (India)

    Rivonker, C.U.; Parulekar, A.H.

    The major elements and trace metals were analysed from nussel tissue and the seawater taken from three depths (0, 5 and 9 meters) from the culture site. Range of variation in Ca, Mg, Fe, Cu, Zn and Mn were 226-399; 708-1329; 0.005-0.084; BDL-0...

  14. Biomarkers of environmental contaminants in field population of green mussel (Perna viridis) from Karnataka-Kerala coast (South West coast of India).

    OpenAIRE

    Krishnakumar, P.K.; Sasikumar, Geetha; Bhat, G. S.; Asokan, D.P.K.

    2006-01-01

    Biomarker: sister chromatid exchange (SCE); chromosomal aberration; micronucleus (MN); hemic neoplasia (HN), mutagenic activity; comet cells. Exposure/effect represented: exposure to trace metals (Fe, Cu, Ni, Cd, Cr, Zn, Pb, Mn) / DNA damage. Analytical technique: Toxic and essential elements in tissues were determined using AAS; metaphase chromosomes were viewed using light microscope (Olympus BX50) with image analysis facility; hemolymph was stained using the Schiff Feulgen-picromethyl blu...

  15. The exotic invasive plant, Amaranthus viridis, suppresses the growth of native acacia by altering soil microbial communities structure and functionalities in a sahelian ecosystem

    Energy Technology Data Exchange (ETDEWEB)

    Sanon, A.; Beguiristain, T.; Sylla, S.; Berthelin, J.; Duponnois, R.

    2009-07-01

    The functioning and stability of terrestrial ecosystems are mainly determined by plant specific richness and composition, which in turn, are closely interlinked with soil organisms development, in particular, soil microorganisms. One of the main success ways of invasive plants was these exogenous organisms-mediated modifications in soil microbial communities composition and diversity as well as their functioning, thus compromising native plant survival. (Author)

  16. Is Hybridization a Source of Adaptive Venom Variation in Rattlesnakes? A Test, Using a Crotalus scutulatus × viridis Hybrid Zone in Southwestern New Mexico

    OpenAIRE

    Giulia Zancolli; Timothy G. Baker; Axel Barlow; Rebecca K. Bradley; Calvete, Juan J.; Kimberley C. Carter; Kaylah de Jager; John Benjamin Owens; Jenny Forrester Price; Libia Sanz; Amy Scholes-Higham; Liam Shier; Liam Wood; Catharine E. Wüster; Wolfgang Wüster

    2016-01-01

    Venomous snakes often display extensive variation in venom composition both between and within species. However, the mechanisms underlying the distribution of different toxins and venom types among populations and taxa remain insufficiently known. Rattlesnakes (Crotalus, Sistrurus) display extreme inter- and intraspecific variation in venom composition, centered particularly on the presence or absence of presynaptically neurotoxic phospholipases A2 such as Mojave toxin (MTX). Interspecific hy...

  17. High-Quality Draft Genome Sequence of Pseudomonas sp. BRG100, a Strain with Bioherbicidal Properties against Setaria viridis (Green Foxtail) and Other Pests of Agricultural Significance

    OpenAIRE

    Dumonceaux, Tim J.; Town, Jennifer; Links, Matthew G.; Boyetchko, Sue

    2014-01-01

    Pseudomonas sp. BRG100 inhibits the growth of certain agricultural pests and is a potentially useful biopesticide for weeds and plant diseases. We have sequenced the 6.25-Mbp genome of this strain and assembled it into 4 scaffolds. Genome sequence comparisons revealed that this strain may represent a novel species of Pseudomonas.

  18. Toxicity and Traces of Hg, Pb and Cd in the Hepatopancreas, Gills and Muscles of Perna viridis from Jakarta Bay, Indonesia.

    Science.gov (United States)

    Irnidayanti, Y

    2015-02-01

    Heavy metals contamination on the coast of Jakarta Bay has led to the level of pollution and can cause toxicity to organisms living in the sea, i.e., green mussels. Green mussels have the ability to detoxify metals entering their bodies. Their ability to accumulate metals is higher than other aquatic animals. This is due to their sedentary life which prevents them from avoiding the effects of pollution and their high tolerance to certain metals. The high concentration of metal content would be toxic to the cell because metal ions can act as oxidants and bind to organic and protein molecules. The results of the study showed that traces of heavy metals were detected in the hepatopancreas, gills, muscles and gonads organs of the mussels living in the waters of Muara Angke. Lead (Pb) and cadmium (Cd) were found in all four organs, while mercury (Hg) was not detected in the muscles. Traces of Hg and Cd were not detected in hepatopancreas, gills, muscles and gonads of green mussels in Panimbang, while Pb was detected by 0.00 1 in the male gonads and 0.01 in hepatopancreas. The concentration of Pb in the male gonads are still below the acceptable limit and concentration of Pb in the hepatopancreas is relatively equivalent to the acceptable limit. Metal detection in the organs above shows that the Muara Angke waters tend to be polluted and have an impact on the mussels weight loss as a result of heavy metal toxicity.

  19. Effects of the invasive polychaete, Marenzelleria viridis, on the fate of sediment associated pollutants – a microcosm study with 14C-labelled pyrene

    DEFF Research Database (Denmark)

    Banta, Gary Thomas; Hedman, Jenny Elisabet

    The deep burrowing, invasive spionid polychaete, Marenzelleria spp. (3 sibling species), is rapidly expanding its range in the Baltic Sea ecosystem, increasing the depth of the bioturbated zone dramatically relative to the native benthic community. One concern is the effect of this invasion...

  20. The exotic invasive plant, Amaranthus viridis, suppresses the growth of native acacia by altering soil microbial communities structure and functionalities in a sahelian ecosystem

    International Nuclear Information System (INIS)

    The functioning and stability of terrestrial ecosystems are mainly determined by plant specific richness and composition, which in turn, are closely interlinked with soil organisms development, in particular, soil microorganisms. One of the main success ways of invasive plants was these exogenous organisms-mediated modifications in soil microbial communities composition and diversity as well as their functioning, thus compromising native plant survival. (Author)

  1. Strong reproductive barriers in a narrow hybrid zone of West-Mediterranean green toads (Bufo viridis subgroup with Plio-Pleistocene divergence

    Directory of Open Access Journals (Sweden)

    Perrin Nicolas

    2010-07-01

    Full Text Available Abstract Background One key question in evolutionary biology deals with the mode and rate at which reproductive isolation accumulates during allopatric speciation. Little is known about secondary contacts of recently diverged anuran species. Here we conduct a multi-locus field study to investigate a contact zone between two lineages of green toads with an estimated divergence time of 2.7 My, and report results from preliminary experimental crosses. Results The Sicilian endemic Bufo siculus and the Italian mainland-origin B. balearicus form a narrow hybrid zone east of Mt. Etna. Despite bidirectional mtDNA introgression over a ca. 40 km North-South cline, no F1 hybrids could be found, and nuclear genomes display almost no admixture. Populations from each side of the contact zone showed depressed genetic diversity and very strong differentiation (FST = 0.52. Preliminary experimental crosses point to a slightly reduced fitness in F1 hybrids, a strong hybrid breakdown in backcrossed offspring (F1 x parental, with very few reaching metamorphosis and a complete and early mortality in F2 (F1 x F1. Conclusion Genetic patterns at the contact zone are molded by drift and selection. Local effective sizes are reduced by the geography and history of the contact zone, B. balearicus populations being at the front wave of a recent expansion (late Pleistocene. Selection against hybrids likely results from intrinsic genomic causes (disruption of coadapted sets of genes in backcrosses and F2-hybrids, possibly reinforced by local adaptation (the ranges of the two taxa roughly coincide with the borders of semiarid and arid climates. The absence of F1 in the field might be due to premating isolation mechanisms. Our results, show that these lineages have evolved almost complete reproductive isolation after some 2.7 My of divergence, contrasting sharply with evidence from laboratory experiments that some anuran species may still produce viable F1 offspring after > 20 My of divergence.

  2. Effect of NH4Cl on Growth of Micro Algae Dunaliella viridis%氯化铵对绿色杜氏藻增殖的影响

    Institute of Scientific and Technical Information of China (English)

    杨春旺; 张青田

    2005-01-01

    报道了氯化铵对绿色杜氏藻增殖的影响情况.绿色杜氏藻的一次性培养试验结果显示,氯化铵的浓度对绿色杜氏藻的增殖具有显著的影响.最适宜绿色杜氏藻增殖的浓度是0.20~1.00mmol/L,浓度值过高和过低均不利于绿色杜氏藻增殖,浓度过高时增殖缓慢,并且稳定期短,易崩溃.在最适宜浓度水平时,绿色杜氏藻进入指数生长期较快,增殖速率值较大;在1.00mmol/L浓度时,绿色杜氏藻在稳定期获得最大的微藻密度值.

  3. Zwei neue Apogonien von den Philippinen

    NARCIS (Netherlands)

    Heller, K.M.

    1897-01-01

    Fulva, parce viridi-metallico micans, supra glabra, subtusatro-viridis, squamulis setiformibus albis sat parce tecta; clypeo antice truncato, creberrime et quam fronte fortius punctato; prothorace aliquid remote punctato, angulis anticis acutis; scutello subtiliter punctato, interdum laevi; elytris

  4. Lack of evidence for AT1R/B2R heterodimerization in COS-7, HEK293, and NIH3T3 cells: how common is the AT1R/B2R heterodimer?

    DEFF Research Database (Denmark)

    Hansen, Jakob L; Hansen, Jonas T; Speerschneider, Tobias;

    2008-01-01

    dimerization using bioluminescence resonance energy transfer and regulated secretion/aggregation technology. However, although both the AT1Rs and B2Rs were functional in our systems and the systems were fine tuned to detect small changes in receptor function, we failed to detect any functional modulation...

  5. ADH Heterodimer Formation in Heterozygotes between Induced Null Alleles and Normal Alleles in Drosophila melanogester%黑腹果蝇杂合体中ADH杂二聚体的形成

    Institute of Scientific and Technical Information of China (English)

    童耕雷; 郑有丽; 徐晋麟; 李坤宝

    2002-01-01

    研究了醇脱氢酶基因(Adh)诱变体与正常基因相互作用后的部分显性现象.所有8个由乙基亚硝基尿素(ENU)和1个X-射线诱变体仅为单碱基置换体,其余3个X-射线诱变体则为9~21个碱基的缺失体.这12个诱变体(除1个外)都能产生可测的突变肽,其中7个不能与正常肽形成二聚体,杂合体酶活性约为正常纯合体的1/2;另4个形成二聚体.形成二聚体突变基因产物中所有氨基酸突变均发生在肽链182~194氨基酸区域,可见该区域对于二聚化不是必需的,该序列可能是重要的催化表面功能区.

  6. Diseño, síntesis y aplicaciones de sistemas supramoleculares homo- y heterodiméricos selectivos y eficientes basados en α,γ-ciclopéptidos

    OpenAIRE

    Brea Fernández, Roberto Javier

    2013-01-01

    Esta Tesis cubre aspectos de la química supramolecular de ciclopéptidos, los cuales en condiciones apropiadas se apilan a través de enlaces de hidrógeno para formar estructuras nanotubulares. Crucial para esta interacción es la adopción de una conformación plana en la que las cadenas laterales de los aminoácidos de los anillos peptídicos adoptan una orientación pseudo-ecuatorial que apunta hacia el exterior, mientras que los grupos carbonilo y amino de los enlaces peptídicos están orientados ...

  7. Studies on the Seasonal Changes in Antioxidant Enzymes Activity on Differently, Polluted Areas along the Bay of Bengal Employing Perna viridis as an Animal Model

    OpenAIRE

    Amutha, C.; P Subramanian

    2012-01-01

    Antioxidants are the innate or acquired molecules capable of slowing down or preventing the oxidative damage (damage due to reactive oxygen species) that caused by free radicals. The antioxidant enzyme activity in response to season as well as hydrocarbon pollution was attempted. Rayapuram fishing harbor of Chennai (Station-1) is highly oil contaminated with oil sleeks on the surface. The relatively moderate oil contaminated area (Station-2) is about 2 km away from the fishing harbor and the ...

  8. 一种狗尾草病原真菌的鉴定及菌株致病性研究%Identification and pathogenicity of fungus on Setaria viridis

    Institute of Scientific and Technical Information of China (English)

    赵杏利; 邓晖; 牛永春

    2010-01-01

    经形态学鉴定和rDNA ITS序列分析,16株分离自北京、河北、河南发病狗尾草的菌株、2株分别分离自河南发病虎尾草、牛筋草的菌株和1株分离自青海发病野燕麦的菌株被鉴定为狗尾草平脐蠕孢Bipolaris setariae.接种试验表明,来自狗尾草的菌株比来自其他寄主植物的菌株对狗尾草致病性强,分离自野燕麦的菌株对狗尾草无致病性,分离自不同地区不同样品狗尾草的菌株其致病性有显著差异.菌株NYl对狗尾草有很强致病性,接种后5d植株叶片即全部呈枯死状,接种后7d整个植株枯萎死亡.菌株NYl对马唐和虎尾草也有很强致病性,但对于大多数供试栽培植物致病性很弱或无致病性.因此,B.setariae NYl菌株具有进一步开发成为狗尾草、马唐和虎尾草等杂草的生物除草剂的潜力.

  9. Analysis of the Dunaliella viridis Transcriptome and Related Pathways following Glucose Induction%葡萄糖诱导绿色杜氏藻转录组及相关通路差异分析

    Institute of Scientific and Technical Information of China (English)

    朱帅旗; 龚一富; 刘浩; 章丽; 王何瑜

    2015-01-01

    绿色杜氏藻是研究耐盐机理的模式绿藻.葡萄糖不仅是营养物质,而且还是信号物质.目前,对绿色杜氏藻转录组、糖处理后差异表达基因和β-胡萝卜素生物合成途径关键基因表达还不清楚.本研究通过Illumina HiSeqTM 2000高通量测序,获得葡萄糖处理和未处理绿色杜氏藻转录组信息.利用P value值和差异倍数对样本进行差异表达分析,共111条转录本存在差异表达,3条为上调转录本,108条为下调转录本.利用RT-qPCR检验差异表达分析的准确性.结果表明,转录本表达结果与转录组分析结果一致.GO功能富集结果表明,71条下调转录本与代谢相关,占所有下调转录本的65.74%.KEGG富集分析结果表明,21条KEGG通路含89条下调转录本,14条通路与代谢相关.代谢中通路最多的为能量代谢(6条),含63条下调转录本.能量代谢中与光合作用相关的下调转录本最多,为29条.通过分析找到2条与β-胡萝卜素生物合成相关通路(MVA/MEP途径及β-胡萝卜.素合成途径),并发现通路的关键基因hmgs、dxs、dxr、psy、pds、chyb,对其进行差异表达分析,均不存在差异表达.研究表明,葡萄糖抑制了绿色杜氏藻光合作用,代谢受阻,但未影响β-胡萝卜.紊生物合成相关通路及关键基因.

  10. Effects of different nutritional conditions on the growth of extreme halotolerant Dunaliella viridis%不同营养条件对极端嗜盐杜氏藻生长的影响研究

    Institute of Scientific and Technical Information of China (English)

    李可文; 宋涛; 程小莲

    2014-01-01

    探讨了不同浓度碳源、氮源(N/P)、无机磷源、脲及卤虫干粉(或发酵液)卤水培养基对极端嗜盐杜氏藻生长的影响,以期为更好地开发杜氏藻资源提供全面、系统的资料.结果表明:通过物理方式直接通入CO2补充极端嗜盐杜氏藻培养基,能有效的保障极端嗜盐杜氏藻生长所需的碳源;采用尿素作为藻培养基氮源效果较好,无机磷浓度应维持较低水平;卤虫发酵液较卤虫干粉能有效延长藻细胞高密度生长期,极端嗜盐杜氏藻适宜培育浓度范围:尿素浓度为30.00 mg·L-1-90.00 mg·L-1,N/P维持在25左右,NaH2PO4浓度为2.71 mg.L-1-12.00 mg·L-1,3.50 mg·L-1最优;卤虫发酵液浓度应在250.00 mg·L-1以上.

  11. Bioinformatics Analysis and Expression Study of DHDDS of Dunaliella viridis%绿色杜氏藻DHDDS基因生物信息学分析及表达研究

    Institute of Scientific and Technical Information of China (English)

    潘益芳; 龚一富; 俞凯; 朱帅旗; 王何瑜

    2015-01-01

    绿色杜氏藻是一种能产生重要次生代谢产物类胡萝卜素的单细胞绿藻,脱氢多萜醇焦磷酸合成酶(dehydrodolichyl diphosphate synthase,DHDDS)是其在类胡萝卜素合成途径中的相关酶.旨在研究DHDDS基因表达与类胡萝卜素含量之间的关系.提取绿色杜氏藻总RNA,通过转录组测序获得DHDDS基因全长,对该基因进行生物信息学分析;并用不同浓度甲基茉莉酸(MeJA)处理绿色杜氏藻,采用实时定量PCR研究该基因转录差异.结果显示,绿色杜氏藻DHDDS基因全长2211 bp,含有一个1 740bp长的开放阅读框(ORF),编码579个氨基酸序列.DHDDS蛋白餍理论等电点为7.63,相对分子质量为62 472.7 Da.预测结果表明,DHDDS蛋白不含信号肽,也不存在跨膜区域,该蛋白定位于细胞质基质.氨基酸序列比对结果显示,绿色杜氏藻DHDDS蛋白与小球藻的同源性最高(59%).实时定量PCR结果表明,经100μmol/L MeJA处理的绿色杜氏藻DHDDS表达水平最高,具有极显著差异;在该浓度下,类胡萝卜素含量均高于其他浓度组.且DHDDS基因的表达与类胡萝卜素含量呈一定的相关性.绿色杜氏藻DHDDS是一种定位于细胞质基质中的酶,其与绿色杜氏藻类胡萝卜素合成途径有关.在一定浓度范围的MeJA诱导下,低浓度的MeJA对其表迭起促进作用,高浓度MeJA对其表达有抑制作用,且其表达与类胡萝卜素含量呈一定的相关性.

  12. Macrobenthic communities of the coastal waters of Dabhol, west coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    Ingole, B.S.; Rodrigues, N.; Ansari, Z.A.

    on the rocky sub- stratum, were collected from sts. 1 and 3. Since the beds of P. viridis were observed in the intertidal and subtidal rocky areas along the Dabhol coast (in the vicinity of sts.1 and 3), therefore the specimens of P. viridis found...

  13. Shallow-water Niphatidae (Haplosclerina, Haplosclerida, Demospongiae) from the São Sebastião Channel and its environs (tropical southwestern Atlantic),

    NARCIS (Netherlands)

    Pinheiro, U.S.; Berlinck, R.G.S.; Hajdu, E.

    2005-01-01

    Two niphatids are described here: Amphimedon viridis and Pachychalina alcaloidifera sp. nov. Amphimedon viridis is a common and conspicuous species in most of the tropical western Atlantic. Pachychalina alcaloidifera sp. nov. has this far been found only in the coasts of Rio de Janeiro and São Paulo

  14. First Record of a Neozygites species (Zygomycetes:Entomophthorales) Infecting Springtails (Insecta:Collembola)

    DEFF Research Database (Denmark)

    Steenberg, T; Eilenberg, J; Bresciani, J.

    1996-01-01

    A fungal pathogen from the Entomophthorales (Zygomycetes) was discovered in populations of the lucerne flea Sminthurus viridis (Collembola) collected from grassland and leguminous crops in Denmark during July to October. The morphology of the fungus was studied in springtails, collected live, whi...... Conidiobolus coronatus. Verticillium lecanii and Beauveria bassiana (Deuteromycotina:Hyphomycetes) were also isolated from S. viridis....

  15. NCBI nr-aa BLAST: CBRC-TTRU-01-0762 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available CBRC-TTRU-01-0762 ref|YP_001798514.1| NADH dehydrogenase subunit 4 [Sminthurus viri...dis] gb|ABS82050.1| NADH dehydrogenase subunit 4 [Sminthurus viridis] YP_001798514.1 0.001 29% ...

  16. Advances in CB1/OX1-GPCR heterodimer and their cross-talk interaction%大麻素受体1/食欲素受体1-G蛋白偶联受体异聚体及其交叉激活作用研究进展

    Institute of Scientific and Technical Information of China (English)

    朱飞; 王湘庆; 陈亚楠; 朗森阳; 张家堂

    2015-01-01

    大麻素受体1(cannabinoid receptor 1,CB1)和食欲素受体1(orexin receptor 1,OX1)同属G蛋白偶联受体(G-proteincoupled receptors,GPCRs),两者在体内分布广泛,均参与调节摄食、能量平衡、睡眠和觉醒、食物和药物的成瘾性等.两者作用位点接近,足以形成异聚体共同参与各项功能调节,多项研究表明,CB1/OX1存在交叉激活作用.本文对CB1和OX1的作用以及CB1/OX1异聚体的交叉激活作用进行综述,以期对其有更深入的认识,从而对CB 1/OX 1-GPCR新药研发起到一定指导作用.

  17. An evidence-based systematic review of spearmint by the natural standard research collaboration.

    Science.gov (United States)

    Ulbricht, Catherine; Costa, Dawn; M Grimes Serrano, Jill; Guilford, Jacquelyn; Isaac, Richard; Seamon, Erica; Varghese, Minney

    2010-06-01

    An evidence-based systematic review of spearmint (Mentha spicata, Mentha viridis) including written and statistical analysis of scientific literature, expert opinion, folkloric precedent, history, pharmacology, kinetics/dynamics, interactions, adverse effects, toxicology, and dosing. PMID:22435615

  18. Effect of different extraction procedures on antimicrobial activity of marine bivalves: A comparison

    Digital Repository Service at National Institute of Oceanography (India)

    Sharma, S.; Chatterji, A.; Das, P.

    Anti-bacterial activity was evaluated in different crude extracts of five commercially important edible marine bivalves, namely Meretrix casta (Chemnitz), Polymesoda (Geloina) P. erosa (Solander), Perna viridis (Linnaeus), Crassostrea gryphoides...

  19. Ten new species of Cicindelidae

    NARCIS (Netherlands)

    Horn, Walther

    1898-01-01

    Differt ab Od. simulatore m. statura majore; labro longiore, in medio (ab basi ad apicem) viridi-tincto, dente mediana distincta; fronte latiore, oculis magis prominentibus, vittis discoidalibus deficientibus; thorace breviore latiore, postice rainus angustato; elytris longioribus, magis parallelis,

  20. 77 FR 37997 - Importation of Dracaena Plants From Costa Rica

    Science.gov (United States)

    2012-06-26

    ... difficult to inspect and treat. On November 1, 2011, we published in the Federal Register (76 FR 67379-67384...(y). (banana rust thrips); Coccus viridis (green scale); Diplosolenodes occidentalis...

  1. Three New Rhizopulvinaria Species (Homoptera: Coccoidea: Coccidae) for Scale Insect Fauna of Turkey

    OpenAIRE

    Kaydan, Mehmet Bora

    2002-01-01

    Three Rhizopulvinaria species, Rhizopulvinaria pyrethri Borchsenius, Rhizopulvinaria turkestanica (Archangelskaya), and Rhizopulvinaria viridis Borchsenius, were identified on wild flora in eastern Anatolia in 1997. All of them are new records for the Turkish scale insect fauna.

  2. Protein (Cyanobacteria): 281806 [PGDBj - Ortholog DB

    Lifescience Database Archive (English)

    Full Text Available se with PAS/PAC and GAF sensors Oscillatoria nigro-viridis PCC 7112 MIEESKSIKEKFGVLDSVPVGACLLQDDFVVLFWNTCLEE...YP_007117793.1 1117:4890 1150:2464 1158:318 482564:246 179408:246 diguanylate cycla

  3. Protein (Cyanobacteria): 281754 [PGDBj - Ortholog DB

    Lifescience Database Archive (English)

    Full Text Available se with PAS/PAC and GAF sensors Oscillatoria nigro-viridis PCC 7112 MLYNNEILPTLTVESSPRSMNILLYKLLSLRRIEYIAVDR...YP_007115817.1 1117:4890 1150:2464 1158:318 482564:246 179408:246 diguanylate cycla

  4. Protein (Cyanobacteria): 281805 [PGDBj - Ortholog DB

    Lifescience Database Archive (English)

    Full Text Available se with PAS/PAC and GAF sensors Oscillatoria nigro-viridis PCC 7112 MYLILPDLYANMTYQIDERLNTSPCGFLSFADDGTIVMVN...YP_007118829.1 1117:4890 1150:2464 1158:318 482564:246 179408:246 diguanylate cycla

  5. Spearmint

    Science.gov (United States)

    ... Garden Mint, Green Mint, Hierbabuena, Huile Essentielle de Menthe Verte, Lamb Mint, Mackerel Mint, Menta Verde, Mentha cordifolia, Mentha crispa, Mentha spicata, Mentha viridis, Menthe Verte, Menthe Crépue, Menthe Douce, Menthe à Épis, ...

  6. Antifouling activities of marine sedentary invertebrates on some macrofoulers

    Digital Repository Service at National Institute of Oceanography (India)

    Wilsanand, V.; Wagh, A.B.; Bapuji, M.

    pfeifferae, Dercitopsis sp.] against cyprids of the barnacle Balanus amphitrite and green mussel Perna viridis are reported here. All the extracts examined inhibited the settlement of cyprids of B. amphitrite. Toxicity revival studies indicate...

  7. Antioxidant, hemolytic and cytotoxic activities of Senecio species used in traditional medicine of northwestern Argentina.

    Science.gov (United States)

    Lizarraga, Emilio; Castro, Felipe; Fernández, Francisco; de Lampasona, Marina P; Catalán, César A N

    2012-05-01

    Senecio nutans Sch. Bip., S. viridis var. viridis Phill. and S. spegazzinii Cabrera are native species used in traditional medicine of northwestern Argentina. The total phenolics, flavonoids and caffeoylquinic acids contents, as well as radical scavenging, antioxidant, hemolytic and cytotoxic activities of aqueous extracts (infusion and decoction) of all three species were determined. S. nutans was the most active. The extracts did not show antibacterial activity. Alkaloids were not detected in any of the aqueous extracts of the three studied species. PMID:22799087

  8. Genetic analysis of the marine mussel Perna viridis (Bivalvia: Mytilidae) based on mitochondrial COI sequence and its phylogenetic relationship with other congeneric species%基于COI序列的翡翠股贻贝Perna viridis线粒体遗传特性分析及其近缘种间的系统关系探讨

    Institute of Scientific and Technical Information of China (English)

    位正鹏; 孔晓瑜; 吴相云; 喻子牛

    2009-01-01

    应用通用引物COIL 1490和COtH 2198对翡翠股贻贝Perna viridis的性腺和体细胞线粒体DNA进行PCR扩增,获得661bp长度的COI基因片段,经过比对性腺与体细胞的COI片段,发现雄性性腺与体细胞COI基因均为一个单倍型,即体内只有一种线粒体DNA类型,没有发现双单性遗传现象,雌、雄性腺的COI基因片段变异率很低(0.31%).应用 PAUP构建NJ树、MP树以及贝叶斯法构建了贝叶斯树,对股贻吡属3种间的系统关系进行了分析,结果表明,翡翠股贻贝P.viridis、p.canaliculus和P.perna之间的分化与分歧年代的估算是相吻合的.

  9. Study on Biological Characteristic of the Halotolerant Dunaliella Viridis Living in the Mud Flat of Bohai Sea Gulf of China%中国渤海湾滩涂极端嗜盐绿色杜氏藻生物学特性研究(二)

    Institute of Scientific and Technical Information of China (English)

    吕爱玲; 张福; 马若欣; 姜润林

    2005-01-01

    文章对中国渤海湾滩涂极端嗜盐绿色杜氏藻的生物学特征作了综合论述,内容包括极端嗜盐绿色杜氏藻的繁殖特性、生长特性、耐盐特性、以及对卤水生境因子(包括化学因子,物理因子,生物因子)适应性的研究.

  10. The Ratio of Na+/Mg2+, Cl-/SO2-4 in Brine Effect the Growth of Halotolerant Dunaliella viridis%卤水Na+/Mg2+,Cl-/SO2-4比值对极端嗜盐绿色杜氏藻生长的影响

    Institute of Scientific and Technical Information of China (English)

    张福; 刘同慧

    2010-01-01

    极端嗜盐绿色杜氏藻是世界上迄今发现的最耐盐的真核光合生物,藻体内含有植物蛋白、脂肪酸、多糖、叶绿素、甘油等多种营养成分和生物活性物质,具有开发天然保健品或生物药品的应用前景、文章依据人工海水理论和方法,研究了水体Na+/Mg2+、Cl-/SO2-4比值对极端嗜盐绿色杜氏藻生长的影响,从而探讨适合该藻类生长的化学环境.

  11. Effects of salinity on growth rate, chlorophyll content and cell cycle of Dunaliella viridis%盐度对绿色杜氏藻生长速率、叶绿素含量及细胞周期的影响

    Institute of Scientific and Technical Information of China (English)

    刘青; 苏绣榕; 李太武; 杨凤香

    2003-01-01

    在不同盐度梯度下,进行了盐度对绿色杜氏藻Dunaliella viridis的生长、叶绿素含量和细胞周期影响的试验.结果表明:1)绿色杜氏藻在盐度为10时,生长速率和单位水体叶绿素含量最低,分别为0.121个/d和908.27μg/L;在盐度为60时,生长速率和单位水体叶绿素含量最高,分别为0.381个/d和1 192.41μg/L.2)不同盐度下单位细胞叶绿素含量呈现高-低-高的变化趋势,盐度60时,单位细胞叶绿素含量最低,叶绿素a为2.32×10-6μg/个,叶绿素总量为3.31×10-6μg/个.3)盐度为60时,绿色杜氏藻的细胞周期S期最短,为36.9%,G2期为0.8%;盐度80时,绿色杜氏藻的G2期最短,为0.3%,S期为43.6%,即绿色杜氏藻在盐度为60~80时,S期、G2期最短,细胞进入分裂期所用时间最短.本试验结果表明,培养绿色杜氏藻以盐度60~80的水体最为适宜.

  12. 转盐生杜氏藻β-胡萝卜素羟化酶基因(chyb)烟草的获得及耐盐性鉴定%Acquisition and Salt-tolerance Evaluation of Transgenic Tobacco (Nicotiana tabacum) with β-carotene Hydroxylase Gene (chyb) from Dunaliella viridis

    Institute of Scientific and Technical Information of China (English)

    许峰; 龚一富; 刘林; 周静; 孙娇璐; 王何瑜

    2015-01-01

    β-胡萝卜素羟化酶(β-carotene hydroxylase,chyb)作为盐生杜氏藻(Dunaliella viridis胡萝卜素合成代谢途径中的关键酶,催化β-胡萝卜素经两步反应合成玉米黄素.盐生杜氏藻chyb基因在植物抗逆性方面有重要研究价值.本研究利用前期克隆得到的盐生杜氏藻chyb基因(GenBank登录号:JN118489),构建了植物表达载体pC AMB IA3 301-chyb.通过根癌农杆菌(Agrobacterium tumefaciens)LBA4404介导的叶盘法将其转入烟草(Nicotiana tabacum),获得16株草铵膦抗性再生植株,经PCR及RT-PCR扩增分析表明,chyb基因已转入其中13株烟草植株中,并可以进行正常转录.通过测定转基因烟草的株高、叶面积、叶绿素含量、叶片相对电导率和脯氨酸含量对转基因烟草的耐盐性进行了检测,结果表明,与对照组相比,转基因烟草的株高、叶面积、叶绿素含量均极显著提高(P<0.01),其中转基因烟草平均株高为37.82cm,是对照组烟草平均株高的1.37倍.在100 mmol/L NaC1胁迫处理下,转基因烟草的成活率为84.45%,是对照组烟草的1.58倍;在200 mmol/L NaC1胁迫下对照组烟草萎蔫死亡,而转基因烟草仍可生长存活.经检测转基因烟草叶片的相对电导率升高但变化幅度较小,脯氨酸含量较对照组极显著增加(P<0.01).研究结果说明转基因烟草的耐盐性得到了提高,为进一步探讨盐生杜氏藻chyb基因在植物耐盐性方面的功能提供基础资料.

  13. Canopy-forming seaweeds in urchin-dominated systems in eastern Canada: structuring forces or simple prey for keystone grazers?

    Directory of Open Access Journals (Sweden)

    Caitlin Blain

    Full Text Available Models of benthic community dynamics for the extensively studied, shallow rocky ecosystems in eastern Canada emphasize kelp-urchin interactions. These models may bias the perception of factors and processes that structure communities, for they largely overlook the possible contribution of other seaweeds to ecosystem resilience. We examined the persistence of the annual, acidic (H2SO4, brown seaweed Desmarestia viridis in urchin barrens at two sites in Newfoundland (Canada throughout an entire growth season (February to October. We also compared changes in epifaunal assemblages in D. viridis and other conspicuous canopy-forming seaweeds, the non-acidic conspecific Desmarestia aculeata and kelp Agarum clathratum. We show that D. viridis can form large canopies within the 2-to-8 m depth range that represent a transient community state termed "Desmarestia bed". The annual resurgence of Desmarestia beds and continuous occurrence of D. aculeata and A. clathratum, create biological structure for major recruitment pulses in invertebrate and fish assemblages (e.g. from quasi-absent gastropods to >150,000 recruits kg(-1 D. viridis. Many of these pulses phase with temperature-driven mass release of acid to the environment and die-off in D. viridis. We demonstrate experimentally that the chemical makeup of D. viridis and A. clathratum helps retard urchin grazing compared to D. aculeata and the highly consumed kelp Alaria esculenta. In light of our findings and related studies, we propose fundamental changes to the study of community shifts in shallow, rocky ecosystems in eastern Canada. In particular, we advocate the need to regard certain canopy-forming seaweeds as structuring forces interfering with top-down processes, rather than simple prey for keystone grazers. We also propose a novel, empirical model of ecological interactions for D. viridis. Overall, our study underscores the importance of studying organisms together with cross-scale environmental

  14. Individual specialization to non-optimal hosts in a polyphagous marine invertebrate herbivore.

    Directory of Open Access Journals (Sweden)

    Finn A Baumgartner

    Full Text Available Factors determining the degree of dietary generalism versus specialism are central in ecology. Species that are generalists at the population level may in fact be composed of specialized individuals. The optimal diet theory assumes that individuals choose diets that maximize fitness, and individual specialization may occur if individuals' ability to locate, recognize, and handle different food types differ. We investigate if individuals of the marine herbivorous slug Elysia viridis, which co-occur at different densities on several green macroalgal species in the field, are specialized to different algal hosts. Individual slugs were collected from three original algal host species (Cladophora sericea, Cladophora rupestris and Codium fragile in the field, and short-term habitat choice and consumption, as well as long-term growth (proxy for fitness, on four algal diet species (the original algal host species and Chaetomorpha melagonium were studied in laboratory experiments. Nutritional (protein, nitrogen, and carbon content and morphological (dry weight, and cell/utricle volume algal traits were also measured to investigate if they correlated with the growth value of the different algal diets. E. viridis individuals tended to choose and consume algal species that were similar to their original algal host. Long-term growth of E. viridis, however, was mostly independent of original algal host, as all individuals reached a larger size on the non-host C. melagonium. E. viridis growth was positively correlated to algal cell/utricle volume but not to any of the other measured algal traits. Because E. viridis feeds by piercing individual algal cells, the results indicate that slugs may receive more cytoplasm, and thus more energy per unit time, on algal species with large cells/utricles. We conclude that E. viridis individuals are specialized on different hosts, but host choice in natural E. viridis populations is not determined by the energetic value of

  15. Gclust Server: 88646 [Gclust Server

    Lifescience Database Archive (English)

    Full Text Available 88646 SCE_YOL090W=MSH2 Cluster Sequences - 964 Protein that forms heterodimers, with Msh3p and Msh6... Protein that forms heterodimers, with Msh3p and Msh6p, that bind to DNA mismatches to initiate the mismatch

  16. Domain Modeling: NP_055804.2 [SAHG[Archive

    Lifescience Database Archive (English)

    Full Text Available NP_055804.2 chr6 STRUCTURAL BASIS FOR A MUNC13-1 DIMERIC - MUNC13-1 - RIM HETERODIM...ER SWITCH: C2-DOMAINS AS VERSATILE PROTEIN-PROTEIN INTERACTION MODULES p2cjsc_ chr6/NP_055804.2/NP_055804.2_

  17. Effect of pre-chilling and environmental factors on breaking seed dormancy and germination of three foxtail species

    Directory of Open Access Journals (Sweden)

    Vajihe AMINI

    2015-11-01

    Full Text Available The effect of wet and dry pre-chilling duration, pH, osmotic stress, salt stress and planting depth on seed germination and seedling emergence of three foxtail species (Setaria glauca, S. verticillata and S. viridis was investigated in a series of laboratory and greenhouse experiments. Both wet and dry pre-chilling for 45 days promoted seed germination of S. glauca compared with the control. Pre-chilling was not significantly effective in seed dormancy breaking of S. viridis and S. verticillata. The maximum germination of foxtails (S. verticillata, S. viridis was obtained when seeds were treated with pH 7 buffer solution. Increasing of osmotic and salt stress decreased seed germination of foxtails. Setaria verticillata seed germination was more tolerant than those of S. glauca and S. viridis to high water stress condition. Setaria glauca and S. verticillata seed germination were more tolerant to high salinity stress than S. viridis. Seedling emergence decreased with increasing the burial depth and no germination observed at 8 cm soil depth.

  18. Effect of unialgal diets on the composition of fatty acids and sterols in juvenile ark shell Tegillarca granosa Linnaeus.

    Science.gov (United States)

    Xu, Jilin; Zhou, Haibo; Yan, Xiaojun; Zhou, Chengxu; Zhu, Peng; Ma, Bin

    2012-04-18

    This study has investigated the effects of six different unialgal diets ( Chaetoceros calcitrans , Platymonas helgolandica , Chlorella sp., Isochrysis galbana , Nannochloropsis oculata , and Pavlova viridis ) on the composition of fatty acids and sterols in juvenile ark shell Tegillarca granosa Linnaeus. The best feeding effects on the growth of shellfish were found in C. calcitrans, followed by I. galbana and P. viridis, whereas Chlorella sp. and N. oculata exhibited relatively poor effects. The fatty acid and sterol compositions in the six microalgae and the juvenile ark shell after feeding were analyzed, and 39 fatty acids and 18 sterols were identified. Although the results demonstrate a close correlation between the sterol compositions in algal species and juvenile ark shell, a similar correlation was not observed between fatty acids. In the juvenile ark shell fed microalgae, the ratio of total saturated fatty acids (SFA) rapidly decreases, whereas the proportion of total polyunsaturated fatty acids (PUFAs) increases considerably. The abundances of AA, EPA, and DHA increase most significantly in shellfish with better growth (fed C. calcitrans, I. galbana, and P. viridis). The number of sterol species is reduced, but the total sterol content in groups fed corresponding microalgae increases, and abundant plant sterols, instead of cholesterol, are accumulated in juvenile ark shell fed appropriate microalgae I. galbana and P. viridis. Therefore, to be more conducive to human health, I. galbana and P. viridis, of the six experimental microalgae, are recommended for artificial ark shell culture.

  19. Pain management in mice using methanol extracts of three plants belongs to family Amaranthaceae

    Institute of Scientific and Technical Information of China (English)

    Ashok Kumar BS; Lakshman K; Jayaveera KN; Vel Murgan C; Arun Kumar PA; Vinod Kumar R; Meghda Hegade; Sridhar SM

    2010-01-01

    Objective:To investigate the analgesic activity of methanolic extract of Amaranthus viridis(A. viridis), Amaranthus caudatus (A. caudatus) and Amaranthus spinosus (A. spinosus). Methods:In this study, the analgesic activity of methanol extracts of all three plants at doses of 200 and 400 mg/kg were investigated by acetic acid-induced writhings test, hot plate test and tail immersion test for mice. Results:It was found that all the three plants showed significant pain management effect(P<0.01) at a dose of 400 mg/kg, but showed a less significant effect at a dose of 20 mg/kg in the entire tests used for evaluation of analgesic activities (P<0.05). Conclusions:Methanol extracts of A. viridis, A. caudatus and A. spinosus show potent analgesic activities, and this study provides the scientific proof for their traditional claims.

  20. Ecological implications of changes in polychaetes population in a shallow Danish estuary

    DEFF Research Database (Denmark)

    Delefosse, Matthieu

    for an average sized M. viridis of about 0.01ml/min of water rich in nutrients and reduced compounds such as sulfide. Provided the large spread of M. viridis in this estuary, the introduction of this non native species in Odense Fjord may have important consequences for the structure of the microbial...... in this thesis evaluates the effect of population change in size and distribution of 3 polychaete species in a shallow Danish estuary - Odense Fjord: the 2 ecologically important Arenicola marina and Nereis diversicolor and the non-native species Marenzelleria viridis. We focus on the effect of the dynamic...... seeds with their fecal pellets. The emergence of the seedling is only possible if the seed is positioned within the top 6 cm of the sediment (MS3). We estimate that in areas where the abundance of A. marina >8 ind m-2, the eelgrass reproductive success may be compromised. The recent increase...

  1. Mycoflora in the rhizosphere of some wild plants around karachi university campus

    International Nuclear Information System (INIS)

    This paper deals with data regarding rhizosphere mycoflora of wild plants including Amaranthus viridis L., Chloris barbata (L.) Swartz and Tridax procumbens L. which were collected from different location around Karachi University campus. Result recorded for the properties of rhizosphere showed texture of soil as sandy loam soil, moisture content ranged between 15-31% and basic pH of C. barbata while acidic in case of A. viridis and T. procumbens. 21 fungal species belonging to 16 genera were isolated from rhizospheric soil of wild plants by direct plate method while 28 species belonging to 20 genera were isolated from rhizosphere soil of wild plants by serial dilution method. The result showed that greatest number of fungi were isolated by serial dilution method. Maximum number of fungi were obtained from rhizosphere soil of C. barbata whereas lowest number of fungi were recorded from rhizosphere soil of A. viridis. (author)

  2. Effect of pre-chilling and environmental factors on breaking seed dormancy and germination of three foxtail species

    OpenAIRE

    Vajihe AMINI; Faezeh ZAEFARIAN; Rezvani, Mohammad

    2015-01-01

    The effect of wet and dry pre-chilling duration, pH, osmotic stress, salt stress and planting depth on seed germination and seedling emergence of three foxtail species (Setaria glauca, S. verticillata and S. viridis) was investigated in a series of laboratory and greenhouse experiments. Both wet and dry pre-chilling for 45 days promoted seed germination of S. glauca compared with the control. Pre-chilling was not significantly effective in seed dormancy breaking of S. viridis and S. verticill...

  3. Gamma ray induced seedling injury and chlorophyll mutants in two varieties of rice

    International Nuclear Information System (INIS)

    Dry, well filled seeds of rice cultivars Basmati and Phalguna were irradiated with 20, 30, 40, and 50 kR gamma ray doses with a view to study their radio sensitivity in inducing seedling injury and chlorophyll mutants. In general, the percentage of germination, survival, seedling height and leaf number decreased in the irradiated population. The spectrum of chlorophyll mutants induced include albino, viridis, xantha and other categories like striata, zebra and maculata. Viridis was more predominant in Basmati whereas xantha was more in phalguna. (author). 7 refs., 2 tabs

  4. BIOMETRIC AND MORPHOMETRIC STUDIES OF Perna v iridis AND Pe rna i ndica ALONG THE SOUTHWEST COAST OF INDIA: A STATISTICAL APPROACH

    Directory of Open Access Journals (Sweden)

    Jayalakshmy KV

    2013-09-01

    Full Text Available The growth indices of the Mussels, Perna viridis and Perna indica collected from the south west coast of India were examined using statistical methods. The Principal Component Analysis (PCA and Exploratory Factor Analysis (EFA sepa rated 2 morphometric gradient groups (spat and adult, indicating the different phenotypic plasticity between them. The factor scores classified P. indica as a unimodal, positively skewed leptokurtic population and P. viridis as a unimodal, negatively skewed leptokurtic population. The allometry was not static, but simple and ontogenetic since their population was continuously varying. The present study shows that factor analysis is better than principal component analysis for delineating the morphometric characteristics of living organisms

  5. Investigation into feed utilization by fore-aged silver carp (Hypophthalmichthys molitrix) using double-marked algae (/sup 14/C and /sup 51/Cr)

    Energy Technology Data Exchange (ETDEWEB)

    Wessel, B.; Spittler, P.; Heerkloss, R. (Rostock Univ. (German Democratic Republic). Sektion Biologie)

    1982-01-01

    The blue-green alga Microcystis firma and two green algae, Dunaliella viridis and Chlorella vulgaris, were double-marked with /sup 14/C and /sup 51/Cr. The /sup 51/Cr was used as an indicator to measure the assimilation efficiency of fore-aged silver carp for radiocarbon. The assimilation efficiency values obtained were 89.0 +- 5.43% for M. firma, 61.3 +- 15.28% for D. viridis and 91.3 +- 2.22% for C. vulgaris.

  6. Ag nanoprisms with Ag₂S attachment.

    KAUST Repository

    Xiong, Shenglin

    2013-01-01

    Triangular Ag nanoprisms are a type of most-studied noble-metal nanostructures over the past decade owing to their special structural architecture and outstanding optical and catalytic properties for a wide range of applications. Nevertheless, in contrast to active research for the synthesis of phase-pure Ag nanoprisms, no asymmetric heterodimers containing Ag prisms have been developed so far, probably due to lack of suitable synthetic methods. Herein, we devise a simple ion-exchange method to synthesize Ag2S/Ag heterodimers at room temperature, through which Ag nanoprisms with controllable size and thickness can be fabricated. Formation chemistry and optical properties of the heterodimers have been investigated. These semiconductor/metal heterodimers have exhibited remarkable bactericidal activity to E. coli cells under visible light illumination.

  7. Collective plasmon modes in a compositionally asymmetric nanoparticle dimer

    Directory of Open Access Journals (Sweden)

    Fuyi Chen

    2011-09-01

    Full Text Available The plasmon coupling phenomenon of heterodimers composed of silver, gold and copper nanoparticles of 60 nm in size and spherical in shape were studied theoretically within the scattered field formulation framework. In-phase dipole coupled σ-modes were observed for the Ag-Au and Ag-Cu heterodimers, and an antiphase dipole coupled π-mode was observed for the Ag-Au heterodimer. These observations agree well with the plasmon hybridization theory. However, quadrupole coupled modes dominate the high energy wavelength range from 357-443 nm in the scattering cross section of the D=60 nm Ag-Au and Ag-Cu heterodimer. We demonstrate for the first time that collective plasmon modes in a compositionally asymmetric nanoparticle dimer have to be predicted from the dipole-dipole approximation of plasmon hybridization theory together with the interband transition effect of the constitutive metals and the retardation effect of the nanoparticle size.

  8. Vitamin-D's molekylære effekt på cellecyklus og onkogenese

    DEFF Research Database (Denmark)

    Schmidt, J; Wittenhagen, P; Hørder, M

    1998-01-01

    The active metabolite of vitamin D, 1,25 (OH)2D3, exerts its cell cycle regulating effects via binding to VDR (Vitamin D Receptor). This complex forms a heterodimer with RXR (Retinoic X Receptor). The VDR-RXR heterodimer binds to promoter regions of cell cycle regulating genes through a vitamin D...... epidemiological investigations give strong support for the benefits of vitamin D in preventing colon cancer and prostate cancer. Udgivelsesdato: 1998-Jul-20......The active metabolite of vitamin D, 1,25 (OH)2D3, exerts its cell cycle regulating effects via binding to VDR (Vitamin D Receptor). This complex forms a heterodimer with RXR (Retinoic X Receptor). The VDR-RXR heterodimer binds to promoter regions of cell cycle regulating genes through a vitamin D...

  9. Activation of the Retinoid X Receptor Modulates Angiotensin II-Induced Smooth Muscle Gene Expression and Inflammation in Vascular Smooth Muscle Cells

    OpenAIRE

    Lehman, Allison M.B.; Montford, John R.; Horita, Henrick; Ostriker, Allison C.; Weiser-Evans, Mary C. M.; Nemenoff, Raphael A.; Furgeson, Seth B.

    2014-01-01

    The retinoid X receptor (RXR) partners with numerous nuclear receptors, such as the peroxisome proliferator activated receptor (PPAR) family, liver X receptors (LXRs), and farnesoid X receptor (FXR). Although each heterodimer can be activated by specific ligands, a subset of these receptors, defined as permissive nuclear receptors, can also be activated by RXR agonists known as rexinoids. Many individual RXR heterodimers have beneficial effects in vascular smooth muscle cells (SMCs). Because ...

  10. Interaction of circadian clock proteins PER2 and CRY with BMAL1 and CLOCK

    OpenAIRE

    Bordon Alain; Tallone Tiziano; Langmesser Sonja; Rusconi Sandro; Albrecht Urs

    2008-01-01

    Abstract Background Circadian oscillation of clock-controlled gene expression is mainly regulated at the transcriptional level. Heterodimers of CLOCK and BMAL1 act as activators of target gene transcription; however, interactions of PER and CRY proteins with the heterodimer abolish its transcriptional activation capacity. PER and CRY are therefore referred to as negative regulators of the circadian clock. To further elucidate the mechanism how positive and negative components of the clock int...

  11. Determinants of the Nuclear Localization of the Heterodimeric DNA Fragmentation Factor (Icad/Cad)

    OpenAIRE

    Lechardeur, Delphine; Drzymala, Luke; Sharma, Manu; Zylka, Danuta; Kinach, Robert; Pacia, Joanna; Hicks, Christopher; Usmani, Nawaid; Rommens, Johanna M.; Lukacs, Gergely L.

    2000-01-01

    Programmed cell death or apoptosis leads to the activation of the caspase-activated DNase (CAD), which degrades chromosomal DNA into nucleosomal fragments. Biochemical studies revealed that CAD forms an inactive heterodimer with the inhibitor of caspase-activated DNase (ICAD), or its alternatively spliced variant, ICAD-S, in the cytoplasm. It was initially proposed that proteolytic cleavage of ICAD by activated caspases causes the dissociation of the ICAD/CAD heterodimer and the translocation...

  12. High level transactivation by a modified Bombyx ecdysone receptor in mammalian cells without exogenous retinoid X receptor

    OpenAIRE

    Suhr, Steven T.; Gil, Elad B.; Senut, Marie-Claude; GAGE, FRED H.

    1998-01-01

    Our studies of the Bombyx mori ecdysone receptor (BE) revealed that, unlike the Drosophila melanogaster ecdysone receptor (DE), treatment of BE with the ecdysone agonist tebufenozide stimulated high level transactivation in mammalian cells without adding an exogenous heterodimer partner. Gel mobility shift and transfection assays with both the ultraspiracle gene product (Usp) and retinoid X receptor heterodimer partners indicated that this property of BE stems from significantly augmented het...

  13. Design and characterization of an enhanced repressor of human papillomavirus E2 protein

    OpenAIRE

    Bose, Kakoli; Meinke, Gretchen; Bohm, Andrew; Baleja, James D.

    2011-01-01

    Papillomaviruses are causative agents of cervical and anogenital cancers. The viral E2 protein mediates viral DNA replication and transactivation of viral oncogenes and thus represents a specific target for therapeutic intervention. Short forms of E2, E2R, contain only the C-terminal dimerization domain, and repress the normal function of E2 due to formation of an inactive heterodimer. Using structure-guided design, we replaced conserved residues at the dimer interface to design a heterodimer...

  14. Association of amino acids embedded in helium droplets detected by mass spectrometry

    Science.gov (United States)

    Lalanne, Matthieu R.; Achazi, Georg; Reichwald, Sebastian; Lindinger, Albrecht

    2015-12-01

    Amino acids were embedded in helium droplets. The electron impact ionization allows for detecting positively charged glycine, valine, histidine, tryptophan and their principal fragments. Monomers and polymers with up to four amino acids are reported. Heterodimers of tryptophan and valine or histidine are observed as well as heterodimers of included fragments. The ability of these associations of molecules to form complexes with water is examined.

  15. Use of monoclonal antibodies for the characterization of novel DNA- binding proteins recognized by human autoimmune sera

    OpenAIRE

    1985-01-01

    Autoantibodies to a DNA-binding heterodimer consisting of 70,000 and 80,000 dalton subunits were identified in 30-50% of human autoimmune sera from patients with systemic lupus erythematosus (SLE), mixed connective tissue disease (MCTD), and scleroderma. Three murine monoclonal antibodies (mAb) against the heterodimer were produced in BALB/c mice by immunizing with isolated human B cell nuclei. By immunofluorescence, the mAb and autoimmune sera demonstrated both speckled nucleoplasmic stainin...

  16. Identification of estrogen receptor dimer selective ligands reveals growth-inhibitory effects on cells that co-express ERα and ERβ.

    Directory of Open Access Journals (Sweden)

    Emily Powell

    Full Text Available Estrogens play essential roles in the progression of mammary and prostatic diseases. The transcriptional effects of estrogens are transduced by two estrogen receptors, ERα and ERβ, which elicit opposing roles in regulating proliferation: ERα is proliferative while ERβ is anti-proliferative. Exogenous expression of ERβ in ERα-positive cancer cell lines inhibits cell proliferation in response to estrogen and reduces xenografted tumor growth in vivo, suggesting that ERβ might oppose ERα's proliferative effects via formation of ERα/β heterodimers. Despite biochemical and cellular evidence of ERα/β heterodimer formation in cells co-expressing both receptors, the biological roles of the ERα/β heterodimer remain to be elucidated. Here we report the identification of two phytoestrogens that selectively activate ERα/β heterodimers at specific concentrations using a cell-based, two-step high throughput small molecule screen for ER transcriptional activity and ER dimer selectivity. Using ERα/β heterodimer-selective ligands at defined concentrations, we demonstrate that ERα/β heterodimers are growth inhibitory in breast and prostate cells which co-express the two ER isoforms. Furthermore, using Automated Quantitative Analysis (AQUA to examine nuclear expression of ERα and ERβ in human breast tissue microarrays, we demonstrate that ERα and ERβ are co-expressed in the same cells in breast tumors. The co-expression of ERα and ERβ in the same cells supports the possibility of ERα/β heterodimer formation at physio- and pathological conditions, further suggesting that targeting ERα/β heterodimers might be a novel therapeutic approach to the treatment of cancers which co-express ERα and ERβ.

  17. The status of Vespertilio borbonicus E. Geoffroy, 1803 (Chiroptera: Vespertilionidae)

    NARCIS (Netherlands)

    Hill, J.E.

    1980-01-01

    The taxonomic history of Scotophilus borbonicus (E. Geoffroy, 1803) from Réunion Island is reviewed and summarised, with the designation of a lectotype. The insular form that it represents is considered conspecific with the small Scotophilus viridis (Peters, 1852) of southern Africa. As a result, Sc

  18. Allelopathy in pigweed (a review)

    OpenAIRE

    Pedro Luis da Costa Aguiar Alves; Leonardo Bianco de Carvalho; Marcelo Claro Souza; Paulo Roberto Fidelis Giancotti

    2011-01-01

    Amaranthus spp. are plants with proven allelopathic potential. The release of allelochemicals from Amaranthus spp. in the environment can influence seed germination, photosynthesis rate, reduce growth and, consequently, the productivity of various plant species. Among the species with allelopathic potential are Amaranthus blitoides, Amaranthus gracilis, Amaranthus hybridus, Amaranthus palmeri, Amaranthus retroflexus, Amaranthus spinosus and Amaranthus viridis, with A. retroflexus being the mo...

  19. De Apterygotenfauna van het eiland Urk

    NARCIS (Netherlands)

    Buitendijk, A.M.

    1929-01-01

    Op een tweetal excursies (van 11—13 Juli en van 26—28 September) werden op Urk negen soorten van Apterygogenea gevonden, n. 1.: Hypogastrura viatica (Tullb.). Friesea mirabilis (Tullb.). Onychiurus armatus (Tullb.). Proisotoma schötti (D. T.). Isotoma (Vertagopus) cinerea (Nic.). Isotoma viridis Bou

  20. A REVISION OF THE GENUS SPATHOLOBUS (LEGUMINOSAE- PAPILIONOIDEAE

    Directory of Open Access Journals (Sweden)

    Jeannette Jeannette

    2014-02-01

    Full Text Available In the S. E. Asiatic genus Spatholobus 28 species are recognized, 6 of which are never described before: S. albus^ S. auricomus, S. auritus, S. hirsutus, S. multiflorus and S. viridis. One variety (S. ferrugineus var. acutus is also newly described. A key and full descriptions with plates and maps to illustrate the distribution are given.

  1. Water relations in millipedes from some alpine habitat types (Central Alps, Tyrol) (Diplopoda)

    NARCIS (Netherlands)

    Meyer, Erwin; Eisenbeis, Gerhard

    1985-01-01

    Five species of millipedes, living cither in a mixed oak wood (alt. 670 m) (Enantiulus nanus, Mastigona mutabilis) or in an Alnus viridis community (alt. 2000 m) ( Leptoiulus saltuvagus, Haasea fonticulorum and Ochogona caroli) and the nival species Trimerophorella nivicomes are compared in respect

  2. 78 FR 19510 - Endangered and Threatened Wildlife and Plants; Initiation of 5-Year Reviews of 56 Species in...

    Science.gov (United States)

    2013-04-01

    .... 1998. Dudleya abramsii subsp. parva... Conejo dudleya.... Endangered........ U.S.A. (CA)....... 62 FR..., delta green ground...... Elaphrus viridis.. Threatened........ U.S.A. (CA)....... 45 FR 52807; 08/08... 95825. Butterfly, bay checkerspot...... Euphydryas editha Threatened........ U.S.A. (CA)....... 49...

  3. Cyperaceae surinamenses novae vel criticae

    NARCIS (Netherlands)

    Uittien, H.

    1933-01-01

    Cyperus ruderalis Uitt. nov. spec. Annuus, viridis, culmis caespitosis, complanatis, raro trigonis, striatis, apicem versus modice setulosis, 6—10 cm longis, 1—1,5 mm latis, basi 0—2-foliatis. Foliis culmo multo brevioribus vel subaequilongis, 1,5—2,5 mm latis. Umbella simplex vel interdum mediocrit

  4. EFFECT OF MANURES ON BIOMASS PRODUCTION AND PHARMACOBIOCHEMICAL PROPERTIES OF SOME GREENS

    OpenAIRE

    Banu, S. Naseer; Sivakumar, A.; Subramanian, M. S.

    2003-01-01

    The present paper deals with the study of biomass production of manures in the greens such as Amaranthus polygamus and Amaranthus viridis of the family Amaranthaceae and Spinacea oleracea of the family Chenopodiaceae. The medicinal uses and pharmaco – phytochemical analysis were also carried out for the plant species which are widely used as greens.

  5. Ultrastructural examination of the pycnidia and conidia of the genus Opegrapha (Arthoniales, Ascomycota

    Directory of Open Access Journals (Sweden)

    Anetta Wieczorek

    2013-12-01

    Full Text Available The paper presents a summary of examinations on the variation of pycnidia and conidia of the following Opegrapha species occurring in Poland: O. atra, O. calcarea, O. dolomitica, O. gyrocarpa, O. niveoatra, O. rupestris, O. varia, O. vermicellifera, O. viridis and O. vulgata.

  6. 76 FR 349 - Combined Notice of Filings #1

    Science.gov (United States)

    2011-01-04

    ... transfer membership interest in Viridis Energy, LLC. Filed Date: 12/23/2010. Accession Number: 20101227... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission Combined Notice of Filings 1 December 27, 2010. Take notice that...

  7. Conditional Reduction of Predation Risk Associated with a Facultative Symbiont in an Insect.

    Directory of Open Access Journals (Sweden)

    Sarah Polin

    Full Text Available Symbionts are widespread among eukaryotes and their impacts on the ecology and evolution of their hosts are meaningful. Most insects harbour obligate and facultative symbiotic bacteria that can influence their phenotype. In the pea aphid Acyrthosiphon pisum, an astounding symbiotic-mediated phenotype has been recently observed: when infected with the symbiotic bacteria Rickettsiella viridis, young red aphid larvae become greener at adulthood and even darker green when co-infected with Rickettsiella viridis and Hamiltonella defensa. As body colour affects the susceptibility towards natural enemies in aphids, the influence of the colour change due to these facultative symbionts on the host survival in presence of predators was tested. Our results suggested that the Rickettsiella viridis infection may impact positively host survival by reducing predation risk. Due to results from uninfected aphids (i.e., more green ones attacked, the main assumption is that this symbiotic infection would deter the predatory ladybird feeding by reducing the profitability of their hosts rather than decreasing host detection through body colour change. Aphids co-infected with Rickettsiella viridis and Hamiltonella defensa were, however, more exposed to predation suggesting an ecological cost associated with multiple infections. The underlying mechanisms and ecological consequences of these symbiotic effects are discussed.

  8. Deactivation of excitation energy in bacterial photosynthetic reaction centres in Langmuir-Blodgett films

    Science.gov (United States)

    Miyake, J.; Hara, M.; Goc, J.; Planner, A.; Wróbel, D.

    1997-08-01

    Absorption, photoacoustic and time-resolved in μs time range delayed luminescence spectra have been measured in order to follow the interaction among chromophores when Rhodobacter sphaeroides and Rhodopseudomonas viridis reaction centres are closely packed in a form of Langmuir-Blodgett multilayers. Two types of Langmuir-Blodgett samples have been prepared and investigated: multilayers consist of one type of reaction centre ( Rhodobacter sphaeroides or Rhodopseudomonas viridis) and multilayers composed of mixed reaction centres ( Rhodobacter sphaeroides mixed with Rhodopseudomonas viridis). Using the Langmuir-Blodgett multilayers composed of two types of bacteria reaction centres mixture, we were able to extend the spectral region of the light/solar energy absorbed by the system. It was shown that each form of pigment participates in thermal dissipation but to a different degree. A special pair (bacteriochlorophyll dimer) does not contribute to delayed luminescence. Delayed luminescence in Rhodopseudomonas viridis and Rhodobacter sphaeroides differs very significantly from each other. Bacteriopheophytin as well as dihydromesochlorophyll contribute to delayed luminescence but the degree of their participation in this radiative process depends strongly on the type of reaction centre. Delayed luminescence and thermal processes have been indicated as important processes of deactivation of the photoexcited chromophores in reaction centres.

  9. [Peculiarities of growth of the monocellular green algae culture after the influence of electromagnetic field in deuterated water-containing media].

    Science.gov (United States)

    Semenov, K T; Aslanian, R R

    2013-01-01

    Exposing the inoculum of monocellular green algae Dunalialla tertiolecta and Tetraselmis viridis to 50 Hz electromagnetic field for several hours resulted in a reduced growth rate in both cultures. It was ascertained that heavy water inhibited growth of algae Dunaliella tertiolecta. The light water activated growth of the culture in the exponential phase only. PMID:23650857

  10. Video micrography of algae photomovement and vectorial method of biomonitoring

    Science.gov (United States)

    Posudin, Yuri I.; Massjuk, N. P.; Lilitskaya, G. G.

    1996-01-01

    The simultaneous recording of several photomovement parameters of algae as test-functions during biomonitoring is proposed. Green alga Dunaliella viridis Teod. was used as the test- object for the estimation of different heavy metals. The quantitative changes of photomovement parameters as a criterion of toxicity were determined by means of the vectorial method of biomonitoring.

  11. [Computational genome analysis of three marine algoviruses].

    Science.gov (United States)

    Stepanova, O A; Boĭko, A L; Shcherbatenko, I S

    2013-01-01

    Computational analysis of genomic sequences of three new marine algoviruses: Tetraselmis viridis virus (TvV-S20 and TvV-SI1 strains) and Dunaliella viridis virus (DvV-SI2 strain) was conducted. Both considerable similarity and essential distinctions between studied strains and the most studied marine algoviruses of Phycodnaviridae family were revealed. Our data show that the tested strains are new viruses with the following features: only they were isolated from marine eukaryotic microalgae T. viridis and D. viridis, coding sequences (CDSs) of their genomes are localized mainly on one of the DNA strands and form several clusters with short intergenic spaces; there are considerable variations in genome structure within viruses and their strains; viral genomic DNA has a high GC-content (55.5 - 67.4%); their genes contain no well-known optimal contexts of translation start codones, and the contexts of terminal codons read-through; the vast majority of viral genes and proteins do not have any matches in gene banks. PMID:24479317

  12. Efeito do bentazon e bentazon + dichlorprop na cultura do arroz irrigado e sobre as plantas daninhas Effect of bentazon and bentazon + dichlorprop on irrigated rice and weeds

    Directory of Open Access Journals (Sweden)

    C.A.L. dos Santos

    1979-06-01

    Full Text Available Foi instalado um experimento de campo, em solo barrento, com a finalidade de se verificar o efeito do bentazon e da mistura de bentazon + dichlorprop sobre o desenvolvimento do arroz em cultura irrigada e sobre o controle das plantas daninhas. Os tratamentos utilizados foram os seguintes: bentazon á 0,75-1,00 e1,50 kg/ha; bentazon + dichlorprop a 0,80 + 1,00 e 1,00 + 1,40 kg/ha; propanil a 4,20 kg/ha (tratamento padrão; testemunha capinada e testemunha sem capina. Todas as pulverizações foram realizadas em pósemergência. As plantas daninhas encontradas no experimento foram: capituva - Echinochloa colonum (L Link, tiririca amarela - Cyperus esculentus L., beldroega - Portulaca oleracea L. e carurú comum - Amaranthus viridis L. Bentazon a 1,00 e 1,50 kg/ha e bentazon + dichlorprop a 1,00 + 1,40 kg/ha foram eficientes no controle de P. oleracea, A. viridis e C. esculentus; já a dose menor de bentazon apresentou bons resultados contra P. oleracea e A. viridis, enquanto que a dose menor de bentazon + dichlorprop controlou apenas P. oleracea. Propanil, de uma maneira geral, proporcionou eficiente ação sobre as plantas daninhas. Nas condições em que foi realizado o experimento nenhum dos herbicidas, nas suas respectivas doses, apresentou fitotoxicidade para as plantas de arroz da variedade IAC-435 ou prejudicou a produção da cultura.Bentazon at 0.75 - 1.00 and 1.50 kg/ha a.i ., bentazon + dichlorprop at 0.80 + 1.00 and 1.00 + 1.40 kg and propanil at 4.20 kg were applied in post-emergence on irrigated rice, against the following weeds: Echinochloa colonum (L. Link, Cy-perus esc-ulentus L., Portulaca oleracea L. and Amaranthus viridis L. Bentazon at 1.00 - 1.50 kg and bentazon + dichlorprop at 1.00 + 1.40 kg gave good control of P. oleracea, A. viridis and C. esculentus; bentazon at 0.75 kg controlled P. oleracea and A. viridis; bentazon + dichlorprop at 0.80 + 1.00 kg only showed effeciency for P. oleracea; propanil, in general, gave good

  13. Synthesis and anti-HIV evaluation of hybrid-type prodrugs conjugating HIV integrase inhibitors with d4t by self-cleavable spacers containing an amino acid residue.

    Science.gov (United States)

    Fossey, Christine; Huynh, Ngoc-Trinh; Vu, Anh-Hoang; Vidu, Anamaria; Zarafu, Irina; Laduree, Daniel; Schmidt, Sylvie; Laumond, Geraldine; Aubertin, Anne-Marie

    2007-10-01

    In an attempt to combine the anti-HIV inhibitory capacity of reverse transcriptase (RT) inhibitors (NRTIs) and integrase (IN) inhibitors (INIs), several heterodimer analogues of the previously reported [d4T]-PABC-[INI] and [d4T]-OABC-[INI] prototypes have been prepared. In these novel series, we wished to extend our results to conjugates which incorporated an enzymatically labile aminoacid unit (L-alanine) connected to d4T through a self-immolative para- or ortho-aminobenzyl carbonate (PABC or OABC) spacer. Among the novel heterodimers, several derivatives show a potent anti-HIV-1 activity, which proved comparable to that of the [L-708,906]-PABC-[d4T] Heterodimer A prototype. However, although the compounds proved inhibitory to HIV-1, they were less potent than the parent compounds from which they were derived. PMID:18035829

  14. Synthesis and anti-HIV evaluation of hybrid-type prodrugs conjugating HIV integrase inhibitors with d4t by self-cleavable spacers containing an amino acid residue.

    Science.gov (United States)

    Fossey, Christine; Huynh, Ngoc-Trinh; Vu, Anh-Hoang; Vidu, Anamaria; Zarafu, Irina; Laduree, Daniel; Schmidt, Sylvie; Laumond, Geraldine; Aubertin, Anne-Marie

    2007-10-01

    In an attempt to combine the anti-HIV inhibitory capacity of reverse transcriptase (RT) inhibitors (NRTIs) and integrase (IN) inhibitors (INIs), several heterodimer analogues of the previously reported [d4T]-PABC-[INI] and [d4T]-OABC-[INI] prototypes have been prepared. In these novel series, we wished to extend our results to conjugates which incorporated an enzymatically labile aminoacid unit (L-alanine) connected to d4T through a self-immolative para- or ortho-aminobenzyl carbonate (PABC or OABC) spacer. Among the novel heterodimers, several derivatives show a potent anti-HIV-1 activity, which proved comparable to that of the [L-708,906]-PABC-[d4T] Heterodimer A prototype. However, although the compounds proved inhibitory to HIV-1, they were less potent than the parent compounds from which they were derived.

  15. Solution Structures of PPARγ2/RXRα Complexes

    Directory of Open Access Journals (Sweden)

    Judit Osz

    2012-01-01

    Full Text Available PPARγ is a key regulator of glucose homeostasis and insulin sensitization. PPARγ must heterodimerize with its dimeric partner, the retinoid X receptor (RXR, to bind DNA and associated coactivators such as p160 family members or PGC-1α to regulate gene networks. To understand how coactivators are recognized by the functional heterodimer PPARγ/RXRα and to determine the topological organization of the complexes, we performed a structural study using small angle X-ray scattering of PPARγ/RXRα in complex with DNA from regulated gene and the TIF2 receptor interacting domain (RID. The solution structures reveal an asymmetry of the overall structure due to the crucial role of the DNA in positioning the heterodimer and indicate asymmetrical binding of TIF2 to the heterodimer.

  16. Accumulation patterns of lipophilic organic contaminants in surface sediments and in economic important mussel and fish species from Jakarta Bay, Indonesia.

    Science.gov (United States)

    Dwiyitno; Dsikowitzky, Larissa; Nordhaus, Inga; Andarwulan, Nuri; Irianto, Hari Eko; Lioe, Hanifah Nuryani; Ariyani, Farida; Kleinertz, Sonja; Schwarzbauer, Jan

    2016-09-30

    Non-target screening analyses were conducted in order to identify a wide range of organic contaminants in sediment and animal tissue samples from Jakarta Bay. High concentrations of di-iso-propylnaphthalenes (DIPNs), linear alkylbenzenes (LABs) and polycyclic aromatic hydrocarbons (PAHs) were detected in all samples, whereas phenylmethoxynaphthalene (PMN), DDT and DDT metabolites (DDX) were detected at lower concentrations. In order to evaluate the uptake and accumulation by economic important mussel (Perna viridis) and fish species, contaminant patterns of DIPNs, LABs and PAHs in different compartments were compared. Different patterns of these contaminant groups were found in sediment and animal tissue samples, suggesting compound-specific accumulation and metabolism processes. Significantly higher concentrations of these three contaminant groups in mussel tissue as compared to fish tissue from Jakarta Bay were found. Because P. viridis is an important aquaculture species in Asia, this result is relevant for food safety. PMID:26853592

  17. Nutritional and toxic factors in selected wild edible plants.

    Science.gov (United States)

    Guil, J L; Rodríguez-García, I; Torija, E

    1997-01-01

    Nutritional (ascorbic acid, dehydroascorbic acid and carotenes); antinutritional and toxic components (oxalic acid, nitrate and erucic acid) were determined in sixteen popular species of wild edible plants which are collected for human consumption in southeast Spain. Ascorbic + dehydroascorbic acids contents were very high in several species, especially in Chenopodium album L. (155 mg/100 g). Carotenoid content ranged from 4.2 mg/100 g (Stellaria media Villars) to 15.4 mg/100 g (Amaranthus viridis L.). A range of values was found for oxalic acid from absence to 1100 mg/100 g of plant material. Nitrate contents ranged from 47 mg/100 g (Salicornia europaea L.) to 597 mg/100 g (Amaranthus viridis L.). Low amounts of erucic acid were found in the Cruciferae family (Sisymbrium irio L. 1.73%; Cardaria draba L. 1.23%) and Plantago major L. 3.45%.

  18. Chemical spying in coral reef fish larvae at recruitment.

    Science.gov (United States)

    Roux, Natacha; Brooker, Rohan M; Lecellier, Gaël; Berthe, Cécile; Frédérich, Bruno; Banaigs, Bernard; Lecchini, David

    2015-10-01

    When fish larvae recruit back to a reef, chemical cues are often used to find suitable habitat or to find juvenile or adult conspecifics. We tested if the chemical information used by larvae was intentionally produced by juvenile and adult conspecifics already on the reef (communication process) or whether the cues used result from normal biochemical processes with no active involvement by conspecifics ("spying" behavior by larvae). Conspecific chemical cues attracted the majority of larvae (four out of the seven species tested); although while some species were equally attracted to cues from adults and juveniles (Chromis viridis, Apogon novemfasciatus), two exhibited greater sensitivity to adult cues (Pomacentrus pavo, Dascyllus aruanus). Our results indicate also that spying cues are those most commonly used by settling fishes (C. viridis, P. pavo, A. novemfasciatus). Only one species (D. aruanus) preferred the odour of conspecifics that had had visual contact with larvae (communication). PMID:26318049

  19. Weed Hosts of Meloidogyne arenaria and M. incognita Common in Tobacco Fields in South Carolina.

    Science.gov (United States)

    Tedford, E C; Fortnum, B A

    1988-10-01

    Thirty-two weed species common in South Carolina and one cultivar of tobacco were evaluated as hosts of Meloidogyne arenaria race 2 and M. incognita race 3 in the greenhouse. Egg mass production and galling differed (P Sorghum halepense, Setaria viridis, Digitaria sanguinalis, and Datura stramonium were poor hosts for M. arenaria. Amaranthus palmeri, Amaranthus hybridus, Chenopodium album, Euphorbia maculata, Setaria lutescens, Vicia villosa, Sida spinosa, Rumex crispus, and Portulaca oleracea were moderate hosts and Ipomoea hederacea var. integriuscula, Xanthium strumarium, Cyperus esculentus, Cynodon dactylon, Paspalum notatum, Eleusine indica, Setaria viridis, and Rumex acetosella were poor hosts for M. incognita. None of the above were good hosts for M. incognita. Tobacco 'PD4' supported large numbers of both nematode species.

  20. Estimation of proximate composition, micronutrients and phytochemical compounds in traditional vegetables from Andaman and Nicobar Islands.

    Science.gov (United States)

    Singh, Shrawan; Singh, D R; Salim, K M; Srivastava, Amit; Singh, L B; Srivastava, R C

    2011-11-01

    In present study, 10 preferred traditional vegetables from Andaman and Nicobar Islands, India, were analysed for nutritional profiles. Moisture content in their edible parts ranged from 83.43 to 94.78%. Maximum ash content was recorded in Portulaca oleracea, crude protein in Colocasia esculenta, crude fibre in Eryngium foetidum and fat in E. foetidum. Phosphorus was maximum in Ipomea aquatica, potassium in C. esculenta, zinc, calcium and manganese in Centella asiatica, copper in Sauropus androgynous, sodium and iron in P. oleracea, magnesium in Amaranthus viridi and cobalt in C. esculenta. Maximum polyphenol was recorded in Hibiscus sabdariffa, carotenoids in A. viridi, ascorbic acid in Saursops androgynus, anthocyanin in C. esculenta and chlorophyll in S. androgynus. Antioxidant activity was maximum in P. oleracea. Positive correlation was observed between polyphenol and tannin content and also between antioxidant activity and photochemicals. The developed nutritional profiles is being used in health and nutrition related schemes in Islands. PMID:21615278

  1. Spatial pattern and ecological process in the coffee agroforestry system.

    Science.gov (United States)

    Perfecto, Ivette; Vandermeer, John

    2008-04-01

    The coffee agroforestry system provides an ideal platform for the study of spatial ecology. The uniform pattern of the coffee plants and shade trees allows for the study of pattern generation through intrinsic biological forces rather than extrinsic habitat patchiness. Detailed studies, focusing on a key mutualism between an ant (Azteca instabilis) and a scale insect (Coccus viridis), conducted in a 45-ha plot in a coffee agroforestry system have provided insights into (1) the quantitative evaluation of spatial pattern of the scale insect Coccus viridis on coffee bushes, (2) the mechanisms for the generation of patterns through the combination of local satellite ant nest formation and regional control from natural enemies, and (3) the consequences of the spatial pattern for the stability of predator-prey (host-parasitoid) systems, for a key coccinelid beetle preying on the scale insects and a phorid fly parasitoid parasitizing the ant.

  2. Accumulation patterns of lipophilic organic contaminants in surface sediments and in economic important mussel and fish species from Jakarta Bay, Indonesia.

    Science.gov (United States)

    Dwiyitno; Dsikowitzky, Larissa; Nordhaus, Inga; Andarwulan, Nuri; Irianto, Hari Eko; Lioe, Hanifah Nuryani; Ariyani, Farida; Kleinertz, Sonja; Schwarzbauer, Jan

    2016-09-30

    Non-target screening analyses were conducted in order to identify a wide range of organic contaminants in sediment and animal tissue samples from Jakarta Bay. High concentrations of di-iso-propylnaphthalenes (DIPNs), linear alkylbenzenes (LABs) and polycyclic aromatic hydrocarbons (PAHs) were detected in all samples, whereas phenylmethoxynaphthalene (PMN), DDT and DDT metabolites (DDX) were detected at lower concentrations. In order to evaluate the uptake and accumulation by economic important mussel (Perna viridis) and fish species, contaminant patterns of DIPNs, LABs and PAHs in different compartments were compared. Different patterns of these contaminant groups were found in sediment and animal tissue samples, suggesting compound-specific accumulation and metabolism processes. Significantly higher concentrations of these three contaminant groups in mussel tissue as compared to fish tissue from Jakarta Bay were found. Because P. viridis is an important aquaculture species in Asia, this result is relevant for food safety.

  3. Crecimiento comparativo de las especies de robalo del pacífico costarricense cultivado en jaulas.

    Directory of Open Access Journals (Sweden)

    Jorge Günther

    2016-03-01

    Full Text Available Se evaluó el crecimiento de varias especies del róbalo del Pacífico, obtenidas como larvas de 50 mg en Punta Morales, Golfo de Nicoya y cultivadas en una jaula suspendida en un canal de abastecimiento de una finca camaronera durante 222 días. Las especies Centropomus nigrescens y C. viridis (N+V se distinguen bien de las especies C. unionensis y C. robalito (U+R por medio de la coloración general, forma de cabeza y cuerpo, y longitud de la espina anal. Las primeras tuvieron un crecimiento aproximadamente tres veces mayor (G=0,14 que las segundas (G=0,05. No se pudieron identificar las especies medius y armatus en la muestra.  En general, el crecimiento del grupo nigrescens-viridis en la jaula fue modesto e inferior al establecido previamente para estas especies en laboratorio.

  4. Weed Hosts of Meloidogyne arenaria and M. incognita Common in Tobacco Fields in South Carolina.

    Science.gov (United States)

    Tedford, E C; Fortnum, B A

    1988-10-01

    Thirty-two weed species common in South Carolina and one cultivar of tobacco were evaluated as hosts of Meloidogyne arenaria race 2 and M. incognita race 3 in the greenhouse. Egg mass production and galling differed (P Cyperus esculentus, Cynodon dactyIon, Echinochloa crus-galli, Eleusine indica, Sorghum halepense, Setaria viridis, Digitaria sanguinalis, and Datura stramonium were poor hosts for M. arenaria. Amaranthus palmeri, Amaranthus hybridus, Chenopodium album, Euphorbia maculata, Setaria lutescens, Vicia villosa, Sida spinosa, Rumex crispus, and Portulaca oleracea were moderate hosts and Ipomoea hederacea var. integriuscula, Xanthium strumarium, Cyperus esculentus, Cynodon dactylon, Paspalum notatum, Eleusine indica, Setaria viridis, and Rumex acetosella were poor hosts for M. incognita. None of the above were good hosts for M. incognita. Tobacco 'PD4' supported large numbers of both nematode species. PMID:19290313

  5. Vibrational spectra of free and intracellular DNA in the weak electromagnetic field

    Science.gov (United States)

    Dovbeshko, Galina I.

    1998-09-01

    Vibrational bands of DNA molecules from birds' erythrocytes, as well as Dunaliella viridis alga cells and Escherichia coli bacteria clinical strains in the weak microwave field were investigated with IR spectroscopy. Drastic changes were detected in the intensities and fine structure of C equals O and PL2 bands for polarized spectra of irradiated samples of DNA molecules as compared with the reference samples in the 1700-1000 cm-1 region. No essential changes were detected in the IR spectra in the region of PO2 bands of DNA for the Escherichia coli, irradiated by the weak electromagnetic field, but essential redistribution of intensities and change in halfwidths of the PO2 symmetrical bonds were detected for Dunaliella viridis alga cells.

  6. 利用ITS序列对两个盐藻株的分子鉴定%Identification of Two Dunaliella sp. Based on Nuclear ITS rDNA Sequences

    Institute of Scientific and Technical Information of China (English)

    王伟; 许政暟; 宋任涛

    2006-01-01

    对实验室长期保存的两个盐藻株(Dunaliella salina)核糖体rDNA的ITS(internal transcribed space)序列(ITS1+5.8SrDNA+ITS2)用PCR技术扩增并克隆,经序列测定后,与从GenBank中获得的相关序列一起构建系统发育树.结果显示:其中一个(Dunaliella salina SHU 01)与Dunaliella viridis CONC 002的距离最近,另一个(Dunaliella salina SHU02)与Dunaliella salina UTEX 1644的距离最近.因此分别命名为Dunaliella viridis SHU与Dunaliella salina SHU.

  7. Robust biological nitrogen fixation in a model grass-bacterial association.

    Science.gov (United States)

    Pankievicz, Vânia C S; do Amaral, Fernanda P; Santos, Karina F D N; Agtuca, Beverly; Xu, Youwen; Schueller, Michael J; Arisi, Ana Carolina M; Steffens, Maria B R; de Souza, Emanuel M; Pedrosa, Fábio O; Stacey, Gary; Ferrieri, Richard A

    2015-03-01

    Nitrogen-fixing rhizobacteria can promote plant growth; however, it is controversial whether biological nitrogen fixation (BNF) from associative interaction contributes to growth promotion. The roots of Setaria viridis, a model C4 grass, were effectively colonized by bacterial inoculants resulting in a significant enhancement of growth. Nitrogen-13 tracer studies provided direct evidence for tracer uptake by the host plant and incorporation into protein. Indeed, plants showed robust growth under nitrogen-limiting conditions when inoculated with an ammonium-excreting strain of Azospirillum brasilense. (11)C-labeling experiments showed that patterns in central carbon metabolism and resource allocation exhibited by nitrogen-starved plants were largely reversed by bacterial inoculation, such that they resembled plants grown under nitrogen-sufficient conditions. Adoption of S. viridis as a model should promote research into the mechanisms of associative nitrogen fixation with the ultimate goal of greater adoption of BNF for sustainable crop production.

  8. Biomarkers and toxicological evaluation of Lavandula spp. essential oils

    OpenAIRE

    Arantes, Silvia; Candeias, M. Fátima; Piçarra, Andreia; Lopes, Orlando; Lima, Mónica; Pereira, Marizia; Cruz-Morais, Júlio; Martins, M. Rosário

    2015-01-01

    Lavenders belong to the family Labiatae and are one of the most popular aromatic plants widely used in food industry, perfumery and pharmaceutical preparations. Their oils are traditionally believed to be antibacterial, antifungal, carminative, sedative, antidepressive, disinfectant, and effective for burns and insect bites [1]. Previous studies have shown that the essentials oils of Lavandula stoechas subsp. luisieri Rozeira (L. luisieri) and Lavandula viridis L’Hér have a broad-spectrum ant...

  9. New Discoveries of Plants From Hebei Province%河北植物新增补属、种与入侵物种新分布

    Institute of Scientific and Technical Information of China (English)

    曲红; 路端正; 王百田

    2007-01-01

    报道了《河北植物志》与《河北高等植物名录》未记录的植物1属3种1变种.其中拔毒散(Sida szechuensis Matsuda)、偃狗尾草[Setaria viridis (L.) Beauv. var. depressa(Honda) Kitag.]在河北省首次记录.

  10. Photoprotection in sequestered plastids of sea slugs and respective algal sources

    OpenAIRE

    Cruz, Sónia; Cartaxana, Paulo; Newcomer, Rebecca; Dionísio, Gisela; Calado, Ricardo; Serôdio, João; Pelletreau, Karen N.; Rumpho, Mary E.

    2015-01-01

    Some sea slugs are capable of retaining functional sequestered chloroplasts (kleptoplasts) for variable periods of time. The mechanisms supporting the maintenance of these organelles in animal hosts are still largely unknown. Non-photochemical quenching (NPQ) and the occurrence of a xanthophyll cycle were investigated in the sea slugs Elysia viridis and E. chlorotica using chlorophyll fluorescence measurements and pigment analysis. The photoprotective capacity of kleptoplasts was compared to ...

  11. Effects of Long-Term Ayahuasca Administration on Memory and Anxiety in Rats

    OpenAIRE

    Vanessa Manchim Favaro; Maurício Yonamine; Juliana Carlota Kramer Soares; Maria Gabriela Menezes de Oliveira

    2015-01-01

    Ayahuasca is a hallucinogenic beverage that combines the action of the 5-HT2A/2C agonist N,N-dimethyltryptamine (DMT) from Psychotria viridis with the monoamine oxidase inhibitors (MAOIs) induced by beta-carbonyls from Banisteriopsis caapi. Previous investigations have highlighted the involvement of ayahuasca with the activation of brain regions known to be involved with episodic memory, contextual associations and emotional processing after ayahuasca ingestion. Moreover long term users show ...

  12. Light-triggered action potentials in plants

    OpenAIRE

    Kazimierz Trębacz

    2014-01-01

    Special attention is paid in this paper to the criteria of the light-triggered action potential, namely the all-or-none law, propagation, the occurrence of refractory periods. Such action potentials have been recorded in Acetabularia mediterranea, Asplenium trichomanes, Bryum pseudotriquetrum, Eremosphaera viridis and Concephalum conicum. In Acetabularia, action potentials are generated after sudden cessation of light stimuli of sufficient intensity. The depolarization phase of the action pot...

  13. Nutraceutical Assessment of Four Amaranthus Species from Burkina Faso

    OpenAIRE

    Ouedraogo Ibrahim; Hilou Adama; Sombie Pierre Alexandre Eric Djifaby; Compaore Moussa; Millogo Jeanne; Nacoulma Odile Germaine

    2011-01-01

    The use of the amaranths as vegetables is developed in Burkina Faso. Most known are Amaranthus dubius Mart. Ex. Thell, Amaranthus graecizans L., Amaranthus hybridus L. and Amaranthus viridis L. A. hybridus is most used and abundantly cultivated, however the others are more or less wild. Theaim of the present study was to investigate the nutraceutical potentialities of four Amaranthus species from Burkina Faso. The aqueous decoction extract of the four species contains the highest ofpolyphenol...

  14. Rediscovery of Pelobates fuscus insubricus in the Asti Province, north-western Italy

    OpenAIRE

    Vincenzo Mercurio; Fabrizio Li Vigni

    2007-01-01

    The amphibians of the pond complex “Stagni di Belangero” in the Po Plain, Asti Province, have been studied. The species living in the pond are Bufo bufo, Bufo viridis, Hyla intermedia, Pelobates fuscus, Rana dalmatina, Rana synklepton esculenta, Rana cf. kurtmuelleri, Triturus carnifex and Triturus vulgaris. Species composition, migration period of P. fuscus, and biometric data are provided. Relevant importance has been given to P. fuscus, since we reconfirm its presence in one...

  15. PRIMJENA KEMIJSKIH MJERA U SUZBIJANJU KOROVA U ULJNOJ BUNDEVI (CUCURBITA PEPO L. VAR. OLEIFERA PIETSCH)

    OpenAIRE

    Besek, Zdenko; Renata BALIČEVIĆ; IVEZIĆ, Marija; Raspudić, Emilija; Ravlić, Marija

    2012-01-01

    Cilj istraživanja provedenog tijekom dvije godine (2002. i 2003.) na dva lokaliteta (Vranjevo i Poljanice) bio je utvrditi učinak herbicida na suzbijanje korova u usjevu uljne bundeve (Cucurbita pepo L. var. oleifera) te usporediti njihovu učinkovitost u odnosu na mehanike mjere suzbijanja korova. Dominantne korovne vrste bile su: Amaranthus retroflexus, Setaria viridis i Echinochloa crus-galli. Sve istraživane herbicidne varijante, osim kombinacije prometrin + fluazifop-p butil, u 2002. godi...

  16. CHEMICAL WEED CONTROL IN OIL PUMPKIN (CUCURBITA PEPO L. VAR. OLEIFERA PIETSCH)

    OpenAIRE

    Zdenko Besek; Renata Baličević; Marija Ivezić; Emilija Raspudić; Marija Ravlić

    2012-01-01

    A two-year experiment (2002 – 2003) was conducted in oil pumpkin (Cucurbita pepo var. oleifera) at two localities (Vranjevo and Poljanice) to evaluate the effectiveness of chemical weed control through application of herbicides, and to compare it with mechanical weed control. Main weeds were Amaranthus retroflexus, Setaria viridis and Echinochloa crus-galli. All herbicide treatments, except combination of prometrine + fluazifop-p butyl36, in 2002 appeared to be acceptable to high efficacy in ...

  17. LPS-induced NO inhibition and antioxidant activities of ethanol extracts and their solvent partitioned fractions from four brown seaweeds

    Science.gov (United States)

    Cho, Myoung Lae; Lee, Dong-Jin; Lee, Hyi-Seung; Lee, Yeon-Ju; You, Sang Guan

    2013-12-01

    The nitric oxide inhibitory (NOI) and antioxidant (ABTS and DPPH radical scavenging effects with reducing power) activities of the ethanol (EtOH) extracts and solvent partitioned fractions from Scytosiphon lomentaria, Chorda filum, Agarum cribrosum, and Desmarestia viridis were investigated, and the correlation between biological activity and total phenolic (TP) and phlorotannin (TPT) content was determined by PCA analysis. The yield of EtOH extracts from four brown seaweeds ranged from 2.6 to 6.6% with the highest yield from D. viridis, and the predominant compounds in their solvent partitioned fractions had medium and/or less polarity. The TP and TPT content of the EtOH extracts were in the ranges of 25.0-44.1 mg GAE/g sample and 0.2-4.6 mg PG/g sample, respectively, which were mostly included in the organic solvent partitioned fractions. Strong NOI activity was observed in the EtOH extracts and their solvent partitioned fractions from D. viridis and C. filum. In addition, the EtOH extract and its solvent partitioned fractions of D. viridis exhibited little cytotoxicity to Raw 264.7 cells. The most potent ABTS and DPPH radical scavenging capacity was shown in the EtOH extracts and their solvent partitioned fractions from S. lomentaria and C. filum, and both also exhibited strong reducing ability. In the PCA analysis the content of TPT had a good correlation with DPPH ( r = 0.62), ABTS ( r = 0.69) and reducing power ( r = 0.65), however, an unfair correlation was observed between the contents of TP and TPT and NOI, suggesting that the phlorotannins might be responsible for the DPPH and ABTS radical scavenging activities.

  18. The adaptive significance of ontogenetic colour change in a tropical python

    OpenAIRE

    Wilson, David; Heinsohn, Robert; Endler, John A

    2006-01-01

    Ontogenetic colour change is typically associated with changes in size, vulnerability or habitat, but assessment of its functional significance requires quantification of the colour signals from the receivers' perspective. The tropical python, Morelia viridis, is an ideal species to establish the functional significance of ontogenetic colour change. Neonates hatch either yellow or red and both the morphs change to green with age. Here, we show that colour change from red or yellow to green pr...

  19. The Signaling Function of an Extra-floral Display: What Selects for Signal Development?

    OpenAIRE

    Tamar Keasar; Adi Sadeh; Avi Shmida

    2007-01-01

    The vertical inflorescences of the Mediterranean annual Salvia viridis carry many small, colorful flowers, and are frequently terminated by a conspicuous tuft of colorful leaves ("flags") that attracts insect pollinators. Insects may use the flags as indicators of the food reward in the inflorescences, as long-distance cues for locating and choosing flowering patches, or both. Clipping of flags from patches of inflorescences in the field significantly reduced the number of pollinators that ar...

  20. Bottom-up effects of soil quality on a coffee arthropod interaction web

    OpenAIRE

    Gonthier, DJ; Dominguez, GM; Witter, JD; Spongberg, AL; Philpott, SM

    2013-01-01

    Nutrient availability and soil quality influence herbivores through changes in plant traits and can have cascading effects on herbivore interactions. In complex systems, with many positive and negative interactions, the consequences of these bottom-up effects are still not well established. We carried out a set of studies to determine the impact of soil quality (organic compost amendments) on a hemipteran herbivore (Coccus viridis), two ant mutualists, predators, pathogens, parasitoids of C. ...

  1. The ecology of Dunaliella in high-salt environments

    OpenAIRE

    Oren, Aharon

    2014-01-01

    Halophilic representatives of the genus Dunaliella, notably D. salina and D. viridis, are found worldwide in salt lakes and saltern evaporation and crystallizer ponds at salt concentrations up to NaCl saturation. Thanks to the biotechnological exploitation of D. salina for β-carotene production we have a profound knowledge of the physiology and biochemistry of the alga. However, relatively little is known about the ecology of the members of the genus Dunaliella in hypersaline environments, in...

  2. Physiological characterization of Dunaliella sp. (Chlorophyta, Volvocales) from Yucatan, Mexico.

    Science.gov (United States)

    García, Francisca; Freile-Pelegrín, Yolanda; Robledo, Daniel

    2007-05-01

    Physiological responses of Dunaliella salina and Dunaliella viridis, isolated from solar saltworks on the Yucatan Peninsula, were studied. Optimal growth temperature for D. salina was 22 degrees C (3.06 x 10(6) cells mL(-1)) and 26 degrees C for D. viridis (4.04 x 10(6)cells mL(-1)). Total carotenoid content in D. salina increased with temperature to a maximum of 35.14 pg cell(-1) at 38 degrees C. Dunaliella salina alpha-carotene and beta-carotene content was 0.083+/-0.003 and 0.598+/-0.020 mg 100g dry wt(-1) respectively, whereas lower values were found in D. viridis cultured under same experimental conditions (0.018+/-0.002 and 0.136+/-0.012 mg 100g dry wt(-1) respectively). The highest specific growth rate in D. salina was obtained at 10% NaCl (0.28 d(-1)), while its cell volume increased from 524 to 2066.93 microm(3) when cultured from 10% to 35% NaCl. Maximum photosynthetic rates were attained when increasing from optimal growing temperature to 30 degrees C for D. viridis (108 n mol O(2)microg chl alpha h(-1)) and D. salina (139 n mol O(2)microg chl alpha h(-1)). Photosynthetic responses to temperature variations indicated physiological adjustments in both species, with higher acclimation in D. salina. Evaluation of physiological attributes of these species will be used for to carry out mass cultivation. PMID:16949279

  3. PHYLOGENETIC STUDY OF SOME STRAINS OF DUNALIELLA

    OpenAIRE

    Duc Tran; Trung Vo; Sixto Portilla; Clifford Louime; Nguyen Doan; Truc Mai; Dat Tran; Trang Ho

    2013-01-01

    Dunaliella strains were isolated from a key site for salt production in Vietnam (Vinh Hao, Binh Thuan province). The strains were identified based on Internal Transcribed Spacer (ITS) markers. The phylogenetic tree revealed these strains belong to the clades of Dunaliella salina and Dunaliella viridis. Results of this study confirm the ubiquitous nature of Dunaliella and suggest that strains of Dunaliella salina might be acquired locally worldwide for the production of beta-carotene. The iden...

  4. The early larval development of the tropical reef lobster Enoplometopus antillensis Lütken (Astacidea, Enoplometopidae) reared in the laboratory Desenvolvimento dos estágios iniciais da lagosta de recife tropical Enoplometopus antillensis Lütken (Astacidea, Enoplometopidae) cultivada em laboratório

    OpenAIRE

    Fernando A. Abrunhosa; Max W. P. Santana; Marcus A.B. Pires

    2007-01-01

    The early stages of the tropical reef lobster Enoplometopus antillensis Lütken, 1865 were described and illustrated in detail from specimens reared in the laboratory. Ovigerous females were captured in their habitat, at a depth of about 15 meters and transported to the laboratory. The larvae were reared in a recirculation water tank for approximately 15 days and then transferred to four 10 liters aquariums. The larvae were fed on Artemia sp. nauplii. Microalgae Dunaliella viridis was added da...

  5. Calculation of the Electromagnetic Field Around a Microtubule

    Directory of Open Access Journals (Sweden)

    D. Havelka

    2009-01-01

    Full Text Available Microtubules are important structures in the cytoskeleton which organizes the cell. A single microtubule is composed of electrically polar structures, tubulin heterodimers, which have a strong electric dipole moment. Vibrations are expected to be generated in microtubules, thus tubulin heterodimers oscillate as electric dipoles. This gives rise to an electromagnetic field which is detected around the cells. We calculate here the electromagnetic field of microtubules if they are excited at 1 GHz. This paper includes work done for the bachelor thesis of the first author. 

  6. Construction of covalently coupled, concatameric dimers of 7TM receptors

    DEFF Research Database (Denmark)

    Terpager, Marie; Scholl, D Jason; Kubale, Valentina;

    2009-01-01

    -Ala repeats flanked by flexible spacers and positively charged residues to ensure correct inside-out orientation plus an extracellular HA-tag to construct covalently coupled dimers of 7TM receptors. Such 15 TM concatameric homo- and heterodimers of the beta(2)-adrenergic and the NK(1) receptors, which...... normally do not dimerize with each other, were expressed surprisingly well at the cell surface, where they bound ligands and activated signal transduction in a manner rather similar to the corresponding wild-type receptors. The concatameric heterodimers internalized upon stimulation with agonists...

  7. Structure of Na+,K+-ATPase at 11-A resolution: comparison with Ca2+-ATPase in E1 and E2 states.

    OpenAIRE

    Rice, W J; Young, H S; Martin, D W; Sachs, J R; Stokes, D.L.

    2001-01-01

    Na+,K+-ATPase is a heterodimer of alpha and beta subunits and a member of the P-type ATPase family of ion pumps. Here we present an 11-A structure of the heterodimer determined from electron micrographs of unstained frozen-hydrated tubular crystals. For this reconstruction, the enzyme was isolated from supraorbital glands of salt-adapted ducks and was crystallized within the native membranes. Crystallization conditions fixed Na+,K+-ATPase in the vanadate-inhibited E2 conformation, and the cry...

  8. Residues of the UL25 Protein of Herpes Simplex Virus That Are Required for Its Stable Interaction with Capsids ▿

    OpenAIRE

    Cockrell, Shelley K.; Huffman, Jamie B.; Toropova, Katerina; James F Conway; Homa, Fred L.

    2011-01-01

    The herpes simplex virus 1 (HSV-1) UL25 gene product is a minor capsid component that is required for encapsidation, but not cleavage, of replicated viral DNA. UL25 is located on the capsid surface in a proposed heterodimer with UL17, where five copies of the heterodimer are found at each of the capsid vertices. Previously, we demonstrated that amino acids 1 to 50 of UL25 are essential for its stable interaction with capsids. To further define the UL25 capsid binding domain, we generated reco...

  9. Epigenetics of dominance for enzyme activity

    Indian Academy of Sciences (India)

    Kuldip S Trehan; Kulbir S Gill

    2002-03-01

    We have isolated and purified two parental homodimers and a unique heterodimer of acid phosphatase [coded by Acph-11.05() and Acph-10.95()] from isogenic homozygotes and heterozygotes of Drosophila malerkotliana. and produce qualitatively different allozymes and the two alleles are expressed equally within and across all three genotypes and and play an equal role in the epigenetics of dominance. Subunit interaction in the heterodimer over a wide range of H+ concentrations accounts for the epigenetics of dominance for enzyme activity.

  10. Bio-accumulation kinetics of radioruthenium in marine bivalves. Laboratory study

    International Nuclear Information System (INIS)

    Three kinds of marine bivalves (wild Saccostrea cucullata, aquacultured Perna viridis and aquacultured Pinctada martens), collected from Daya Bay, the South China Sea, were used to investigate the bio-accumulation of radioruthenium in the glass aquarium with natural seawater (pH 8.20, 35 per mille salinity, filtered by 0.45 μm) at ambient temperature under laboratory feeding conditions. The experimental results show that the stead-state of biology concentration factor (BCF, ml/g) of radioruthenium was approached around 6 days for most species of bivalves. The values of BCF in shells are the highest in organs all the three bivalves. The orders of BCF values (ml x g-1) are as: Perna viridis (33.2) < Saccostrea cucullata (47.0) < Pinctada martensi (208.4) for shells and Saccostrea cucullata (1.5) < Pinctada martensi (2.2) ∼ Perma viridis (2.4) for soft tissues, respectively, after exposed for 14 days. The rate constants of uptake and elimination of radioruthenium on marine bivalves were also discussed by first-order kinetics model. The Pinctada martensi may be applicable to be an indictor for monitoring radioruthenium among the three bivalves. (author)

  11. Effects of ocean acidification on the metabolic rates of three species of bivalve from southern coast of China

    Institute of Scientific and Technical Information of China (English)

    LIU Wenguang; HE Maoxian

    2012-01-01

    Oceanic uptake of anthropogenic carbon dioxide results in a decrease in seawater pH,a process known as “ocean acidification”.The pearl oyster Pinctada fucata,the noble scallop Chlamys nobilis,and the green-lipped mussel Perna viridis are species of economic and ecological importance along the southern coast of China.We evaluated the effects of seawater acidification on clearance,respiration,and excretion rates in these three species.The animals were reared in seawater at pH 8.1 (control),7.7,or 7.4.The clearance rate was highest at pH 7.7 for P.fucata and at pH 8.1 for C.nobilis and P.viridis.The pH had little effect on the respiration rate of P.fucata and P.viridis.In contrast,the respiration rate was significantly lower at pH 7.4 in C.nobilis.The excretion rate was significantly lower at pH 7.4 than pH 8.1 for all species.The results indicate that the reduction in seawater pH likely affected the metabolic process (food intake,oxygen consumption,and ammonia excretion) of these bivalves.Different species respond differently to seawater acidification.Further studies are needed to demonstrate the exact mechanisms for this effect and evaluate adaptability of these bivalves to future acidified oceans.

  12. [Is it possible to "cancel" aging process of cell cultures under optimal conditions for cultivation?].

    Science.gov (United States)

    Bozhkov, A I; Kovaleva, M K; Menzianova, N G

    2011-01-01

    The characteristics of the cells epigenotypes Dunaliella viridis Teod. in the process of chronological and replicative aging were investigated. By 40th day of accumulative cultivation (which coincided with the stationary growth phase) DNA content in the cells of Dunaliella viridis increased 2 times, triacylglycerides 3 times, beta-carotene and carbonyl proteins 2 times, RNA content decreased in comparison with cells in exponential growth phase, i. e., the 40th day of growth of culture forms the age-related epigenotype. 4 received subcultures were being transplanted during 2 years in mid-logarithmic growth phase (subculture-10), early stationary phase of growth (subculture-20), in the mid-stationary growth phase (subculture-30), and late stationary growth phase (subculture-40). It is shown that epigenotype of subculture-10 remained unchanged over 2 years of cultivation, i. e., it does not manifest replicative aging. At the same time, the subculture-20, although long enough (at least 40 passages), maintained epigenotype characteristic of young cultures, and showed age-related changes. Pronounced age-dependent changes of epigenotype in the course of cultivation were identified for subculture-30, and subculture-40 was characterized by unstable epigenotype. Thus, cultivation conditions determine the intensity of replicative aging in Dunaliella viridis.

  13. 中国广肩小蜂一新属及一新纪录属(膜翅目,广肩小蜂科)%ONE NEW GENUS AND ONE NEWLY RECORDED GENUS OF EURYTOMIDAE(HYMENOPTERA,CHALCIDOIDEA)FROM CHINA,WITH A DESCRIPTION OF ONE NEW SPECIES

    Institute of Scientific and Technical Information of China (English)

    陈岩; 肖晖; 黄大卫

    2004-01-01

    研究了广肩小蜂科1新属丽广肩小蜂属Chryseurytoma Chen et Huang,描述1新种绿丽广肩小蜂Chryseurytoma viridis Chen et Huang,sp.nov.及中国1新纪录属刺盾广肩小蜂Acantheurytoma Cameron.新种绿丽广肩小蜂Chryseurytoma viridis Chen et Huang,sp. nov.的主要特征为:额无前眶脊;前足基节无纵槽;前单眼位于触角洼之上;胸部明显隆起;前胸背板前缘无脊;盾纵沟伸至中胸盾片3/4;触角除棒节褐色外其余为黄色;柄后腹长为宽的3.2倍.模式标本保存于中国科学院动物研究所动物标本馆.%One new genus Chryseurytoma Chen et Huang,with its included species Chryseurytoma viridis Chen et Huang,sp.nov.,is described.One newly recorded genus Acantheurytoma Cameron is noted from China.Type specimens are deposited in the Zoological Museum,Institute of Zoology,Chinese Academy of Sciences.

  14. Grasses suppress shoot-borne roots to conserve water during drought.

    Science.gov (United States)

    Sebastian, Jose; Yee, Muh-Ching; Goudinho Viana, Willian; Rellán-Álvarez, Rubén; Feldman, Max; Priest, Henry D; Trontin, Charlotte; Lee, Tak; Jiang, Hui; Baxter, Ivan; Mockler, Todd C; Hochholdinger, Frank; Brutnell, Thomas P; Dinneny, José R

    2016-08-01

    Many important crops are members of the Poaceae family, which develop root systems characterized by a high degree of root initiation from the belowground basal nodes of the shoot, termed the crown. Although this postembryonic shoot-borne root system represents the major conduit for water uptake, little is known about the effect of water availability on its development. Here we demonstrate that in the model C4 grass Setaria viridis, the crown locally senses water availability and suppresses postemergence crown root growth under a water deficit. This response was observed in field and growth room environments and in all grass species tested. Luminescence-based imaging of root systems grown in soil-like media revealed a shift in root growth from crown-derived to primary root-derived branches, suggesting that primary root-dominated architecture can be induced in S. viridis under certain stress conditions. Crown roots of Zea mays and Setaria italica, domesticated relatives of teosinte and S. viridis, respectively, show reduced sensitivity to water deficit, suggesting that this response might have been influenced by human selection. Enhanced water status of maize mutants lacking crown roots suggests that under a water deficit, stronger suppression of crown roots actually may benefit crop productivity. PMID:27422554

  15. Phytotoxicity of volatile oil from Eucalyptus citriodora against some weedy species.

    Science.gov (United States)

    Setia, N; Batish, D R; Singh, H P; Kohli, R K

    2007-01-01

    A study was undertaken to explore the phytotoxicity of volatile essential oil from Eucalyptus citriodora Hook. against some weeds viz. Bidens pilosa, Amaranthus viridis, Rumex nepalensis, and Leucaena leucocephala in order to assess its herbicidal activity. Dose-response studies conducted under laboratory conditions revealed that eucalypt oils (in concentration ranging from 0.0012 to 0.06%) greatly suppress the germination and seedling height of test weeds. At 0.06% eucalypt oil concentration, none of the seed of test weeds germinated. Among the weed species tested, A. viridis was found to be the most sensitive and its germination was completed inhibited even at 0.03%. Not only the germination and seedling growth, even the chlorophyll content and respiratory activity in leaves of emerged seedlings were severely affected. In A. viridis chlorophyll content and respiratory activity were reduced by over 51% and 71%, respectively, even at a very low concentration of 0.06%. These results indicated an adverse effect of eucalypt oils on the photosynthetic and energy metabolism of the test weeds. A strong negative correlation was observed between the observed effect and the concentration of eucalypt oil. Based on the study, it can be concluded that oil from E. citriodora possess strong inhibitory potential against weeds that could be exploited for weed management. PMID:17717987

  16. [Is it possible to "cancel" aging process of cell cultures under optimal conditions for cultivation?].

    Science.gov (United States)

    Bozhkov, A I; Kovaleva, M K; Menzianova, N G

    2011-01-01

    The characteristics of the cells epigenotypes Dunaliella viridis Teod. in the process of chronological and replicative aging were investigated. By 40th day of accumulative cultivation (which coincided with the stationary growth phase) DNA content in the cells of Dunaliella viridis increased 2 times, triacylglycerides 3 times, beta-carotene and carbonyl proteins 2 times, RNA content decreased in comparison with cells in exponential growth phase, i. e., the 40th day of growth of culture forms the age-related epigenotype. 4 received subcultures were being transplanted during 2 years in mid-logarithmic growth phase (subculture-10), early stationary phase of growth (subculture-20), in the mid-stationary growth phase (subculture-30), and late stationary growth phase (subculture-40). It is shown that epigenotype of subculture-10 remained unchanged over 2 years of cultivation, i. e., it does not manifest replicative aging. At the same time, the subculture-20, although long enough (at least 40 passages), maintained epigenotype characteristic of young cultures, and showed age-related changes. Pronounced age-dependent changes of epigenotype in the course of cultivation were identified for subculture-30, and subculture-40 was characterized by unstable epigenotype. Thus, cultivation conditions determine the intensity of replicative aging in Dunaliella viridis. PMID:21809617

  17. Moisture Absorption and Retention of Plysaccharides from Four Marine Shellfishes%4种海洋贝类多糖提取和保湿性研究

    Institute of Scientific and Technical Information of China (English)

    邓一清; 童银洪; 陈小丽; 梁飞龙; 杜晓东

    2012-01-01

    Polysaccharides were obtained from the whole viscera of marine shellfishes Pinctada martensii, Pteria penguin, Perna viridis and Crassostrea rivularis by hot water extraction. Moisture absorption of the polysaccharidc extractions from the four shellfishes were evaluated in contrast with traditional humectants such as glycerol, 1,3-butanediol, propanediol, PEG-400. At a relative humidity of 44%, the order of moisture absorption rate at 12 hours of the humectants was as follows: Pinctada martensii < Crassostrea rivularis< Pteria penguin < Perna viridis < PEG-400 < 1, 3-butanediol < glycerol < propanediol. At a relative humidity of 80%, the order of moisture absorption rate at 12 hours of the humectants listed as follows: Crassostrea rivularis < Pinctada martensii < Pteria penguin < 1,3-butanediol < Perna viridis < PEG-400 < glycerol Perna viridis > Pinctada martensii> Pteria penguin > glycerol > 1, 3-butanediol> propanediol > PEG-400. Moisture absorption rate of polysaccharide from Perna viridis was superior to the other shellfishes, and inferior to traditional humectants. Moisturizing retention rate of polysaccharide of Perna viridis was inferior to oyster, and superior to the others.%以马氏珠母贝(Pinctada martensii)、企鹅珍珠贝(Pteria penguin)、翡翠贻贝(Perna viridis)和近江牡蛎(oyster)的内脏团为原料提取、纯化多糖,与甘油、聚乙二醇400( PEG-400)、丙二醇和1,3-丁二醇四种常规保湿剂进行比较.结果表明,在相对湿度为44%时,前12h吸湿率顺序为:马氏珠母贝<近江牡蛎<企鹅珍珠贝<翡翠贻贝< PEG-400<1,3-丁二醇<甘油<丙二醇;在相对湿度为80%时,前12h吸湿率顺序为:近江牡蛎<马氏珠母贝<企鹅珍珠贝<1,3-丁二醇<翡翠贻贝< PEG-400<甘油<丙二醇.前12h的保湿率顺序为:近江牡蛎>翡翠贻贝>马氏珠母贝>企鹅珍珠贝>甘油>1,3-丁二醇>丙二醇> PEG-400.翡翠

  18. Extensive mapping of PPAR binding to genomic DNA

    DEFF Research Database (Denmark)

    Nielsen, Ronni; Pedersen, Thomas Åskov; Trindade, Luisa;

    The peroxisome proliferator-activated receptor (PPAR) transcription factors a, d and g are members of the nuclear hormone receptor super family. The PPARs bind regulatory DNA elements (PPREs) as heterodimers with the retinoid X receptor (RXR) and thereby induce transcription in response to ligand...

  19. Monozygotic twins with a de novo 0.32 Mb 16q24.3 deletion, including TUBB3 presenting with developmental delay and mild facial dysmorphism but without overt brain malformation

    DEFF Research Database (Denmark)

    Grønborg, Sabine; Kjaergaard, Susanne; Hove, Hanne;

    2015-01-01

    Nervous system development is highly dependent on the function of microtubules, which are assembled from tubulin heterodimers containing several α- and β-tubulin isotypes encoded by separate genes. A spectrum of neurological disorders with malformations of the central nervous system has recently ...

  20. The mouse mismatch repair protein, MSH3, is a nucleoplasmic protein that aggregates into denser nuclear bodies under conditions of stress.

    NARCIS (Netherlands)

    Holt, I.; Thanh Lam, L.; Tome, S.; Wansink, D.G.; Riele, H. te; Gourdon, G.; Morris, G.E.

    2011-01-01

    The mismatch repair protein, MSH3, together with MSH2, forms the MutSbeta heterodimer which recognizes and repairs base pair mismatches and larger insertion/deletion loops in DNA. Lack of specific antibodies against mouse MSH3 has hampered studies of its expression and localization. Mouse MSH3 is no

  1. Sequence Classification: 892043 [

    Lifescience Database Archive (English)

    Full Text Available Non-TMB Non-TMH Non-TMB Non-TMB Non-TMB TMB >gi|6323665|ref|NP_013736.1| Mitochondrial protein, forms... a heterodimer complex with Mto1p that performs the 5-carboxymethylaminomethyl modificatio

  2. Role of Jumonji c-domain containing protein 6 (JMJD6) in infectivity of foot-and-mouth disease virus

    Science.gov (United States)

    Foot-and-mouth disease virus (FMDV) can utilize as many as three distinct groups of receptor molecules to attach and enter a susceptible host cell. Four integrin heterodimers (alphavBeta1, alphavBeta3, alphavBeta6, and alphavBeta8) can function as the primary receptor for FMDV field strains. FMDV ...

  3. Low retinol levels differentially modulate bile salt-induced expression of human and mouse hepatic bile salt transporters

    NARCIS (Netherlands)

    M.O. Hoeke; J.R.M. Plass; J. Heegsma; M. Geuken; D. van Rijsbergen; J.F.W. Baller; F. Kuipers; H. Moshage; P.L.M. Jansen; K.N. Faber

    2009-01-01

    The farnesoid X receptor/retinoid X receptor-alpha (FXR/RXRalpha) complex regulates bile salt homeostasis, in part by modulating transcription of the bile salt export pump (BSEP/ABCB11) and small heterodimer partner (SHP/NR0B2). FXR is activated by bile salts, RXRalpha by the vitamin A derivative 9-

  4. Low Retinol Levels Differentially Modulate Bile Salt-Induced Expression of Human and Mouse Hepatic Bile Salt Transporters

    NARCIS (Netherlands)

    Hoeke, Martijn O.; Plass, Jacqueline R. M.; Heegsma, Janette; Geuken, Mariska; van Rijsbergen, Duncan; Baller, Julius F. W.; Kuipers, Folkert; Moshage, Han; Jansen, Peter L. M.; Faber, Klaas Nico

    2009-01-01

    The farnesoid X receptor/retinoid X receptor-alpha (FXR/RXR alpha) complex regulates bile salt homeostasis, in part by modulating transcription of the bile salt export pump (BSEP/ABCB11 I) and small heterodimer partner (SHP/NR0B2). FXR is activated by bile salts, RXR alpha by the vitamin A derivativ

  5. Exciton interaction in molecular beacons: a sensitive sensor for short range modifications of the nucleic acid structure.

    Science.gov (United States)

    Bernacchi, S; Mély, Y

    2001-07-01

    Molecular beacons are hairpin-shaped, single-stranded oligonucleotides constituting sensitive fluorescent DNA probes widely used to report the presence of specific nucleic acids. In its closed form the stem of the hairpin holds the fluorophore covalently attached to one end, close to the quencher, which is covalently attached to the other end. Here we report that in the closed form the fluorophore and the quencher form a ground state intramolecular heterodimer whose spectral properties can be described by exciton theory. Formation of the heterodimers was found to be poorly sensitive to the stem sequence, the respective positions of the dyes and the nature of the nucleic acid (DNA or RNA). The heterodimer allows strong coupling between the transition dipoles of the two chromophores, leading to dramatic changes in the absorption spectrum that are not compatible with a Förster-type fluorescence resonance energy transfer (FRET) mechanism. The excitonic heterodimer and its associated absorption spectrum are extremely sensitive to the orientation of and distance between the dyes. Accordingly, the application of molecular beacons can be extended to monitoring short range modifications of the stem structure. Moreover, the excitonic interaction was also found to operate for doubly end-labeled duplexes. PMID:11433038

  6. Co-expression of Dorsal and Rel2 Negatively Regulates Antimicrobial Peptide Expression in the Tobacco Hornworm Manduca sexta.

    Science.gov (United States)

    Zhong, Xue; Rao, Xiang-Jun; Yi, Hui-Yu; Lin, Xin-Yu; Huang, Xiao-Hong; Yu, Xiao-Qiang

    2016-01-01

    Nuclear factor κB (NF-κB) plays an essential role in regulation of innate immunity. In mammals, NF-κB factors can form homodimers and heterodimers to activate gene expression. In insects, three NF-κB factors, Dorsal, Dif and Relish, have been identified to activate antimicrobial peptide (AMP) gene expression. However, it is not clear whether Dorsal (or Dif) and Relish can form heterodimers. Here we report the identification and functional analysis of a Dorsal homologue (MsDorsal) and two Relish short isoforms (MsRel2A and MsRel2B) from the tobacco hornworm, Manduca sexta. Both MsRel2A and MsRel2B contain only a Rel homology domain (RHD) and lack the ankyrin-repeat inhibitory domain. Overexpression of the RHD domains of MsDorsal and MsRel2 in Drosophila melanogaster S2 and Spodoptera frugiperda Sf9 cells can activate AMP gene promoters from M. sexta and D. melanogaster. We for the first time confirmed the interaction between MsDorsal-RHD and MsRel2-RHD, and suggesting that Dorsal and Rel2 may form heterodimers. More importantly, co-expression of MsDorsal-RHD with MsRel2-RHD suppressed activation of several M. sexta AMP gene promoters. Our results suggest that the short MsRel2 isoforms may form heterodimers with MsDorsal as a novel mechanism to prevent over-activation of antimicrobial peptides. PMID:26847920

  7. Analysis of HLA and Non-HLA Alleles Can Identify Individuals at High Risk for Celiac Disease

    NARCIS (Netherlands)

    Romanos, Jihane; Van Diemen, Cleo C.; Nolte, Ilja M.; Trynka, Gosia; Zhernakova, Alexandra; Fu, Jingyuan; Bardella, Maria Teresa; Barisani, Donatella; Mcmanus, Ross; Van Heel, David A.; Wijmenga, Cisca

    2009-01-01

    BACKGROUND & AIMS: Celiac disease (CD) is a common chronic disorder of the small intestine, resulting from aberrant cellular responses to gluten peptides, and often remains undiagnosed. It is a complex genetic disorder, although 95% of the patients carry the risk heterodimer human leukocyte antigen

  8. Lipolanthionine peptides act as inhibitors of TLR2-mediated IL-8 secretion. Synthesis and structure-activity relationships.

    NARCIS (Netherlands)

    Seyberth, T.; Voss, S.; Brock, R.E.; Wiesmuller, K.H.; Jung, G.

    2006-01-01

    Lipoproteins from gram-positive and -negative bacteria, mycoplasma, and shorter synthetic lipopeptide analogues activate cells of the innate immune system via the Toll-like receptor TLR2/TLR1 or TLR2/TLR6 heterodimers. For this reason, these compounds constitute highly active adjuvants for vaccines

  9. Sequence Classification: 894094 [

    Lifescience Database Archive (English)

    Full Text Available n that forms heterodimers, with Msh3p and Msh6p, that bind to DNA mismatches to initiate the mismatch repair... process; contains a Walker ATP-binding motif required for repair activity; Msh2p-Msh6p binds to and hydrolyzes ATP; Msh2p || http://www.ncbi.nlm.nih.gov/protein/6324482 ...

  10. Expression and Role of Myeloid-related Protein-14 in Clinical and Experimental Sepsis

    NARCIS (Netherlands)

    M.A.D. van Zoelen; T. Vogl; D. Foell; S.Q. van Veen; J.W.O. van Till; S. Florquin; M.W. Tanck; X. Wittebole; P.F. Laterre; M.A. Boermeester; J. Roth; T. van der Poll

    2009-01-01

    Rationale: Myeloid-related protein-8 (MRP8) and MRP14 can form heterodimers that elicit a variety of inflammatory responses. We showed that MRP8/14 is a ligand for Toll-like receptor-4, and that mice deficient in MRP8/14 are protected against endotoxic shock-induced lethality. Objectives: To determi

  11. Synergistic interaction of CLAVATA1, CLAVATA2, and RECEPTOR-LIKE PROTEIN KINASE 2 in cyst nematode parasitism of Arabidopsis

    Science.gov (United States)

    Plant-parasitic cyst nematodes secrete CLAVATA3 (CLV3)/ENDOSPERM SURROUNDING REGION (ESR) (CLE)-like effector proteins. These proteins act as ligand mimics of plant CLE peptides and are required for successful nematode infection. Previously, we showed that CLV2 and CORYNE (CRN), a heterodimer recept...

  12. Structural basis for signaling by exclusive EDS1 heteromeric complexes with SAG101 or PAD4 in plant innate immunity.

    Science.gov (United States)

    Wagner, Stephan; Stuttmann, Johannes; Rietz, Steffen; Guerois, Raphael; Brunstein, Elena; Bautor, Jaqueline; Niefind, Karsten; Parker, Jane E

    2013-12-11

    Biotrophic plant pathogens encounter a postinfection basal resistance layer controlled by the lipase-like protein enhanced disease susceptibility 1 (EDS1) and its sequence-related interaction partners, senescence-associated gene 101 (SAG101) and phytoalexin deficient 4 (PAD4). Maintainance of separate EDS1 family member clades through angiosperm evolution suggests distinct functional attributes. We report the Arabidopsis EDS1-SAG101 heterodimer crystal structure with juxtaposed N-terminal α/β hydrolase and C-terminal α-helical EP domains aligned via a large conserved interface. Mutational analysis of the EDS1-SAG101 heterodimer and a derived EDS1-PAD4 structural model shows that EDS1 signals within mutually exclusive heterocomplexes. Although there is evolutionary conservation of α/β hydrolase topology in all three proteins, a noncatalytic resistance mechanism is indicated. Instead, the respective N-terminal domains appear to facilitate binding of the essential EP domains to create novel interaction surfaces on the heterodimer. Transitions between distinct functional EDS1 heterodimers might explain the central importance and versatility of this regulatory node in plant immunity.

  13. The Ku80 carboxy terminus stimulates joining and artemis-mediated processing of DNA ends

    DEFF Research Database (Denmark)

    Weterings, Eric; Verkaik, Nicole S; Keijzers, Guido;

    2008-01-01

    Repair of DNA double-strand breaks (DSBs) is predominantly mediated by nonhomologous end joining (NHEJ) in mammalian cells. NHEJ requires binding of the Ku70-Ku80 heterodimer (Ku70/80) to the DNA ends and subsequent recruitment of the DNA-dependent protein kinase catalytic subunit (DNA-PK(CS)) an...

  14. Sitosterolemia in ABC-transporter G5-deficient mice is aggravated on activation of the liver-X receptor (vol 126, pg 944, 2004)

    NARCIS (Netherlands)

    Plosch, T; Bloks, VW; Terasawa, Y; Berdy, S; Siegler, K; van der Sluijs, F; Kema, IP; Groen, AK; Shan, B; Kuipers, F; Schwartz, M

    2004-01-01

    Background & Aims: Mutations in either adenosine triphosphate-binding cassette (ABC) half-transporter G5 or G8 cause sitosterolemia. It has been proposed that ABCG5/ABCG8 heterodimers mediate secretion of plant sterols and cholesterol by hepatocytes into bile and their efflux from enterocytes into t

  15. Thermodynamic Basis of Electron Transfer in Dihydroorotate Dehydrogenase B from Lactococcus lactis:  Analysis by Potentiometry, EPR Spectroscopy, and ENDOR Spectroscopy

    DEFF Research Database (Denmark)

    Mohnsen, Al-Walid A.; Rigby, Stephen E. J.; Jensen, Kaj Frank;

    2004-01-01

    Dihydroorotate dehydrogenase B (DHODB) is a complex iron-sulfur flavoprotein that catalyzes the conversion of dihydroorotate to orotate and the reduction of NAD+. The enzyme is a dimer of heterodimers containing an FMN, an FAD, and a 2Fe-2S center. UV-visible, EPR, and ENDOR spectroscopies have b...

  16. The subcellular distribution of the human ribosomal "stalk" components: P1, P2 and P0 proteins

    DEFF Research Database (Denmark)

    Tchórzewski, Marek; Krokowski, Dawid; Rzeski, Wojciech;

    2003-01-01

    The ribosomal "stalk" structure is a distinct lateral protuberance located on the large ribosomal subunit in prokaryotic, as well as in eukaryotic cells. In eukaryotes, this ribosomal structure is composed of the acidic ribosomal P proteins, forming two hetero-dimers (P1/P2) attached...

  17. Model of red blood cell membrane skeleton: electrical and mechanical properties.

    Science.gov (United States)

    Kozlov, M M; Markin, V S

    1987-12-21

    A theoretical membrane skeleton model of erythrocyte has been developed and successfully applied to interpret electrical and mechanical properties of the red blood cell spectrin-actin network. The model is based on the structure of the membrane skeleton that is comprised of unit cells each containing an actin protofilament and shooting forth a few spectrin heterodimers. The loose ends of the heterodimers of adjacent cells can form bonds with each other giving rise to an integrated network. The number of bonds depends on the temperature. The bond length being excessive (2.6 times the distance between the centers of adjacent cells), the bonds are flexible, and can thus be regarded as entropy springs. The advanced model has been employed to calculate the shear modulus of the membrane skeleton as well as to establish its temperature dependence. In a wide range of temperatures mu(T) is a decreasing function well fitting the experimental data. The relationship between the membrane bilayer-free size of the skeleton and the ionic strength of the solution has been derived to appear in good agreement with the results obtained previously. Experimental data combined with the advanced theory yield the average number of heterodimers per unit cell, m0, as equal to ca. 5; the spectrin heterodimer charge has been estimated. PMID:3455470

  18. The newcomer in the integrin family: Integrin a9 in biology and cancer

    DEFF Research Database (Denmark)

    Høye, Anette Melissa; Couchman, John Robert; Wewer, Ulla M.;

    2012-01-01

    Integrins are heterodimeric transmembrane receptors regulating cell-cell and cell-extracellular matrix interactions. Of the 24 integrin heterodimers identified in humans, a9ß1 integrin is one of the least studied. a9, together with a4, comprise a more recent evolutionary sub-family of integrins t...

  19. Identification of the subunit of cAMP receptor protein (CRP) that functionally interacts with CytR in CRP-CytR-mediated transcriptional repression

    DEFF Research Database (Denmark)

    Meibom, K L; Kallipolitis, B H; Ebright, R H;

    2000-01-01

    At promoters of the Escherichia coli CytR regulon, the cAMP receptor protein (CRP) interacts with the repressor CytR to form transcriptionally inactive CRP-CytR-promoter or (CRP)(2)-CytR-promoter complexes. Here, using "oriented heterodimer" analysis, we show that only one subunit of the CRP dimer...

  20. Upregulation of the transcription factor TFEB in t(6;11)(p21;q13)-positive renal cell carcinomas due to promoter substitution

    NARCIS (Netherlands)

    Kuiper, RP; Schepens, M; Thijssen, J; van Asseldonk, M; van den Berg, E; Bridge, J; Schuuring, E; Schoenmakers, EFPM; van Kessel, AG

    2003-01-01

    The MITF/TFE subfamily of basic helix-loop-helix leucine-zipper (bHLH-LZ) transcription factors consists of four closely related members, TFE3, TFEB, TFEC and MITF, which can form both homo- and heterodimers. Previously, we demonstrated that in t(X;1)(p11;q21)-positive renal cell carcinomas (RCCs),

  1. Distinct mechanisms of nuclear accumulation regulate the functional consequence of E2F transcription factors

    NARCIS (Netherlands)

    Allen, K.E.; Luna, S. de la; Kerkhoven, R.M.; Bernards, R.A.; Thangue, N.B. La

    1997-01-01

    Transcription factor E2F plays an important role in coordinating and integrating early cell cycle progression with the transcription apparatus. It is known that physiological E2F arises when a member of two families of proteins, E2F and DP, interact as E2F/DP heterodimers and that transcriptional ac

  2. Effect of specific amino acid substitutions in the putative fusion peptide of structural glycoprotein E2 on Classical Swine Fever Virus replication

    Science.gov (United States)

    E2, along with E^rns and E1, is an envelope glycoprotein of Classical Swine Fever Virus (CSFV). E2 is involved in several virus functions including cell attachment, host range susceptibility and virulence in natural hosts. In infected cells, E2 forms homodimers as well as heterodimers with E1, media...

  3. [Anoxygenic phototrophic bacteria from microbial communities of Goryachinsk Thermal Spring (Baikal Area, Russia)].

    Science.gov (United States)

    Kalashnikov, A M; Gaĭsin, V A; Sukhacheva, M V; Namsaraeva, B B; Panteleeva, A N; Nuianzina-Boldareva, E N; Kuznetsov, B B; Gorlenko, V M

    2014-01-01

    Species composition of anoxygenic phototrophic bacteria in microbial mats of the Goryachinsk thermal spring was investigated along the temperature gradient. The spring belonging to nitrogenous alkaline hydrotherms is located at the shore of Lake Baikal 188 km north-east from Ulan-Ude. The water is of the sulfate-sodium type, contains trace amounts of sulfide, salinity does not exceed 0.64 g/L, pH 9.5. The temperature at the outlet of the spring may reach 54 degrees C. The cultures of filamentous anoxygenic phototrophic bacteria, nonsulfur and sulfur purple bacteria, and aerobic anoxygenic phototrophic bacteria were identified using the pufLM molecular marker. The fmoA marker was used for identification of green sulfur bacteria. Filamentous cyanobacteria predominated in the mats, with anoxygenic phototrophs comprising a minor component of the phototrophic communities. Thermophilic bacteria Chloroflexus aurantiacus were detected irn the samples from both the thermophilic and mesophilic mats. Cultures ofnonsulfur purple bacteria similar to Blastochloris sulfoviridis and Rhodomicrobium vannielii were isolatd from the mats developing at high (50.6-49.4 degrees C) and low temperatures (45-20 degrees C). Purple sulfur bacteria Allochromatium sp. and Thiocapsa sp., as well as green sulfur bacteria Chlorobium sp., were revealedin low-temperature mats. Truly thermophilic purple and gree sulfur bacteria were not found in the spring. Anoxygenic phototrophic bacteria found in the spring were typical of the sulfuret communities, for which the sulfur cycle is mandatory. The presence of aerobic bacteriochlorophylla-containing bacteria identified as Agrobacterium (Rhizobium) tumifaciens in the mesophilic (20 degrees C) mat is of interest.

  4. Structural basis of the heterodimerization of the MST and RASSF SARAH domains in the Hippo signalling pathway

    Energy Technology Data Exchange (ETDEWEB)

    Hwang, Eunha [Korea Basic Science Institute, Ochang-eup Yeongudangiro 162, Cheongwon-gun, Chungbuk 363-883 (Korea, Republic of); Korea University, Seoul 136-701 (Korea, Republic of); Cheong, Hae-Kap [Korea Basic Science Institute, Ochang-eup Yeongudangiro 162, Cheongwon-gun, Chungbuk 363-883 (Korea, Republic of); Mushtaq, Ameeq Ul [Korea University, Sejong-ro, Sejong 339-700 (Korea, Republic of); Kim, Hye-Yeon; Yeo, Kwon Joo; Kim, Eunhee [Korea Basic Science Institute, Ochang-eup Yeongudangiro 162, Cheongwon-gun, Chungbuk 363-883 (Korea, Republic of); Lee, Woo Cheol; Hwang, Kwang Yeon [Korea University, Seoul 136-701 (Korea, Republic of); Cheong, Chaejoon, E-mail: cheong@kbsi.re.kr [Korea Basic Science Institute, Ochang-eup Yeongudangiro 162, Cheongwon-gun, Chungbuk 363-883 (Korea, Republic of); Jeon, Young Ho, E-mail: cheong@kbsi.re.kr [Korea University, Sejong-ro, Sejong 339-700 (Korea, Republic of); Korea Basic Science Institute, Ochang-eup Yeongudangiro 162, Cheongwon-gun, Chungbuk 363-883 (Korea, Republic of)

    2014-07-01

    The heterodimeric structure of the MST1 and RASSF5 SARAH domains is presented. A comparison of homodimeric and heterodimeric interactions provides a structural basis for the preferential association of the SARAH heterodimer. Despite recent progress in research on the Hippo signalling pathway, the structural information available in this area is extremely limited. Intriguingly, the homodimeric and heterodimeric interactions of mammalian sterile 20-like (MST) kinases through the so-called ‘SARAH’ (SAV/RASSF/HPO) domains play a critical role in cellular homeostasis, dictating the fate of the cell regarding cell proliferation or apoptosis. To understand the mechanism of the heterodimerization of SARAH domains, the three-dimensional structures of an MST1–RASSF5 SARAH heterodimer and an MST2 SARAH homodimer were determined by X-ray crystallography and were analysed together with that previously determined for the MST1 SARAH homodimer. While the structure of the MST2 homodimer resembled that of the MST1 homodimer, the MST1–RASSF5 heterodimer showed distinct structural features. Firstly, the six N-terminal residues (Asp432–Lys437), which correspond to the short N-terminal 3{sub 10}-helix h1 kinked from the h2 helix in the MST1 homodimer, were disordered. Furthermore, the MST1 SARAH domain in the MST1–RASSF5 complex showed a longer helical structure (Ser438–Lys480) than that in the MST1 homodimer (Val441–Lys480). Moreover, extensive polar and nonpolar contacts in the MST1–RASSF5 SARAH domain were identified which strengthen the interactions in the heterodimer in comparison to the interactions in the homodimer. Denaturation experiments performed using urea also indicated that the MST–RASSF heterodimers are substantially more stable than the MST homodimers. These findings provide structural insights into the role of the MST1–RASSF5 SARAH domain in apoptosis signalling.

  5. Morphological and molecular identification of bamboo culm brown rot%刚竹秆褐腐病病原形态及分子鉴定

    Institute of Scientific and Technical Information of China (English)

    周春来; 吴小芹; 叶利芹; 叶建仁; 徐旭凌; 曹云

    2011-01-01

    Bamboo culm brown rot occurs generally, especially in Nanjing,and influences the growth of bamboo such as Phyllostachys glauca and Ph. viridis f. houzeauana,especially for the former. There was no any reports about Ph. glauca infected the disease previously. By isolation and culture of diseased tissue、artificial inoculation test, morphological observation of isolated strain and amplification with universal primer ITS1/ITS4, finally molecular identification with fragment amplified of 559 bp by ITS analysis, the pathogen of Ph. glauca and Ph. viridis f. houzeauana was identified as Fusarium equiseti (Corda) Sacc.. The research result could provide the reference basis for the effective monitoring and control of the disease.%刚竹秆褐腐病在南京地区发生较普遍,影响竹林生长.其主要危害刚竹属的淡竹(Phyllostachys glauca)、黄槽刚竹(Ph.viridis f.houzeauana),其中以淡竹受害最为严重.笔者通过对刚竹秆褐腐病病组织分离培养、人工接种试验、分离菌形态学观察及采用通用引物ITS1/ITS4扩增,对扩增出的约559 bp的片段进行ITS序列分子鉴定,最终将在淡竹和黄槽刚竹等上发生的病原鉴定为木贼镰刀菌(Fusarium equiseti(Corda)Sacc.).

  6. Comparison of Arbuscular Mycorrhizal Fungal Community in Roots and Rhizosphere of Invasive Cenchrus incertus and Native Plant in Inner Mongolia, China

    Institute of Scientific and Technical Information of China (English)

    Dan XIANG; Baodong CHEN; Huan LI; Ruojuan LI; Xin ZHANG

    2016-01-01

    Plant invasions could significantly alter arbuscular mycorrhizal (AM) fungal communities, but the effect may vary with plant species and local environments. Identifying changes in the AM fungal community due to plant invasion could improve our understanding of the invasion processes. Here, we examined the AM fungal community composition both in roots and rhizo-sphere soils of the invasive plant Cenchrus incertus and the dominant native plant Setaria viridis in a typical steppe in Inner Mongolia by using terminal restriction fragment length polymorphism analyses (T-RFLP). The results showed that AM fungal abundance in the rhizosphere soils of C. incertus was significantly lower than that of S. viridis. The AM fungal community com-position in the rhizosphere soils of the two plant species also largely differed. In general, AM fungal community structures in roots corresponded very wel to that in rhizosphere soils for both plant species. The dominant AM fungal type both in invasive and native plants was T-RFLP 524bp, which represents Glomus sp. (Virtual taxa 109 and 287). Three specific T-RF types (280, 190 and 141bp) were significantly more abundant in C. incertus, representing three clusters in Glomus which also named as VT (virtual taxa) 287, 64 and 214, Rhizophagus intraradices (VT 113) and Diversispora sp. (VT 60). While the specific T-RF types, 189 and 279bp, for S. viridis, only existed in Glomus cluster 1 (VT 156), were significantly less abundant in C. incertus. These results indicated that AM fungi might play an important role in the invasion process of C. incertus, which stil remains to be fur-ther investigated.

  7. Molecular identification key based on PCR/RFLP for three polychaete sibling species of the genus Marenzelleria, and the species' current distribution in the Baltic Sea

    Science.gov (United States)

    Blank, M.; Laine, A. O.; Jürss, K.; Bastrop, R.

    2008-06-01

    Studies of Marenzelleria species were often hampered by identification uncertainties when using morphological characters only. A newly developed PCR/RFLP protocol allows a more efficient discrimination of the three species Marenzelleria viridis, Marenzelleria neglecta and Marenzelleria arctia currently known for the Baltic Sea. The protocol is based on PCR amplification of two mitochondrial DNA gene segments (16S, COI) followed by digestion with restriction enzymes. As it is faster and cheaper than PCR/sequencing protocols used so far, the protocol is recommended for large-scale analyses. The markers allow an undoubted determination of species irrespective of life stage or condition of the worms in the samples. The protocol was validated on about 950 specimens sampled at more than 30 sites of the Baltic and the North Sea, and on specimens from populations of the North American east coast. Besides this test we used mitochondrial DNA sequences (16S, COI, Cytb) and starch gel electrophoresis to further investigate the distribution of the three Marenzelleria species in the Baltic Sea. The results show that M. viridis (formerly genetic type I or M. cf. wireni) occurred in the Öresund area, in the south western as well as in the eastern Baltic Sea, where it is found sympatric with M. neglecta. Allozyme electrophoresis indicated an introduction by range expansion from the North Sea. The second species, M. arctia, was only found in the northern Baltic Sea, where it sometimes occurred sympatric with M. neglecta or M. viridis. For Baltic M. arctia, the most probable way of introduction is by ship ballast water from the European Arctic. There is an urgent need for a new genetic analysis of all Marenzelleria populations of the Baltic Sea to unravel the current distribution of the three species.

  8. Impaired gonadal and somatic development corroborate vulnerability differences to the synthetic estrogen ethinylestradiol among deeply diverged anuran lineages.

    Science.gov (United States)

    Tamschick, Stephanie; Rozenblut-Kościsty, Beata; Ogielska, Maria; Lehmann, Andreas; Lymberakis, Petros; Hoffmann, Frauke; Lutz, Ilka; Schneider, Rudolf J; Kloas, Werner; Stöck, Matthias

    2016-08-01

    Amphibians are undergoing a global decline. One poorly investigated reason could be the pollution of aquatic habitats by endocrine disrupting compounds (EDCs). We tested the susceptibility to the synthetically stabilized estrogen 17α-ethinylestradiol (EE2) in three deeply diverged anuran species, differing in sex determination systems, types of gonadogenesis and larval ecologies. To understand whether data from the amphibian model Xenopus laevis (Pipidae) are analogous and applicable to only distantly related non-model amphibians, tadpoles of X. laevis, Hyla arborea (Hylidae) and Bufo viridis (Bufonidae) were simultaneously exposed to 50, 500 and 5000ng/L EE2 from hatching until completion of metamorphosis, using a flow-through-system under identical experimental conditions. Comparing molecularly established genetic with histologically assessed phenotypic sex in all species, we have recently shown that EE2 provoked numerous genetic-male-to-phenotypic-female sex reversals and mixed sex individuals, confirming overall its expected feminizing effect. In the present study, we focus on the influence of EE2 on gonadal and somatic development. Anatomy and histology revealed several species-specific effects. In both non-model species, H. arborea and B. viridis, high numbers of anatomically impaired gonads were observed. In H. arborea, exposed to 5000ng/L EE2, numerous underdeveloped gonads were detected. Whereas EE2 did not alter snout-to-vent length and body weight of X. laevis metamorphs, H. arborea showed a treatment-dependent decrease, while B. viridis exhibited an increase in body weight and snout-to-vent length. Apart from a concentration-dependent occurrence of yellowish skin color in several H. arborea, no organ-specific effects were detected. Since EE2 ubiquitously occurs in many aquatic ecosystems and affects sexual and somatic development, among EDCs, it may indeed contribute to amphibian decline. The inter-species variation in developmental EE2-effects

  9. Influence of benthic macrofauna community shifts on ecosystem functioning in shallow estuaries

    Directory of Open Access Journals (Sweden)

    Erik eKristensen

    2014-09-01

    Full Text Available We identify how ecosystem functioning in shallow estuaries is affected by shifts in benthic fauna communities. We use the shallow estuary, Odense Fjord, Denmark, as a case study to test our hypotheses that (1 shifts in benthic fauna composition and species functional traits affect biogeochemical cycling with cascading effects on ecological functioning, which may (2 modulate pelagic primary productivity with feedbacks to the benthic system. Odense Fjord is suitable because it experienced dramatic shifts in benthic fauna community structure from 1998 to 2008. We focused on infaunal species with emphasis on three dominating burrow-dwelling polychaetes: the native Nereis (Hediste diversicolor and Arenicola marina, and the invasive Marenzelleria viridis. The impact of functional traits in the form of particle reworking and ventilation on biogeochemical cycles, i.e. sediment metabolism and nutrient dynamics, was determined from literature data. Historical records of summer nutrient levels in the water column of the inner Odense Fjord show elevated concentrations of NH4+ and NO3- (DIN during the years 2004-2006, exactly when the N. diversicolor population declined and A. marina and M. viridis populations expanded dramatically. In support of our first hypothesis, we show that excess NH4+ delivery from the benthic system during the A. marina and M. viridis expansion period enriched the overlying water in DIN and stimulated phytoplankton concentration. The altered benthic-pelagic coupling and stimulated pelagic production may, in support of our second hypothesis, have feedback to the benthic system by changing the deposition of organic material. We therefore advice to identify the exact functional traits of the species involved in a community shift before studying its impact on ecosystem functioning. We also suggest studying benthic community shifts in shallow environments to obtain knowledge about the drivers and controls before exploring deep

  10. Nutrient composition and nutritional importance of green leaves and wild food resources in an agricultural district, Koutiala, in southern Mali.

    Science.gov (United States)

    Nordeide, M B; Hatløy, A; Følling, M; Lied, E; Oshaug, A

    1996-11-01

    This paper discusses the nutrient composition and the nutritional importance of green leaves and wild gathered foods in an area with surplus food production in Mali. In this West African country, there is little information about the nutrient composition and the nutritional quality of foods in general, and of wild gathered foods in particular. Food frequency was collected in two cross-sectional surveys. Focus group discussions with women in the area were used to collect information about seasonality, availability and preparation of various foods. Selected food samples were collected for chemical analysis of nutrient composition. The food samples of green leaves (Adansonia digitata, Amaranthus viridis, Tamarindus indica, Allium cepa), seeds and flour (Parkia biglobosa) and fruits (Tamarindus indica) were analysed for water, energy, fat, protein, minerals, amino acids and carotenoids. Availability and use of the foods varied with seasons. In the rainy season, wild gathered foods (e.g. A. digitata) were used as much as fresh cultivated foods (e.g., A. viridis and A. cepa). The wild food resources were more frequently used in rural than in urban areas, with A. digitata as the dominating green leaves. Green leaves were rich in energy, protein and minerals (calcium, iron). Leaves of A. viridis were, in particular, rich in beta-carotene (3290 micrograms/100 g). Chemical score in dried green leaves varied from 47 (A. cepa) to 81 (A. digitata), with lysine as the first limiting amino acid. P. biglobosa fermented seeds, with 35% fat and 37% protein were a complementary source of lysine in the diet. Based on the seasonality, the frequency of use and the nutrient contents of selected green leaves and wild gathered foods in Koutiala district, it is concluded that these traditional and locally produced foods are valuable and important nutrient contributors in the diet both in rural and urban areas, but most important in rural areas.

  11. NR4A nuclear receptors mediate carnitine palmitoyltransferase 1A gene expression by the rexinoid HX600

    Energy Technology Data Exchange (ETDEWEB)

    Ishizawa, Michiyasu [Division of Biochemistry, Department of Biomedical Sciences, Nihon University School of Medicine, 30-1 Oyaguchi-kamicho, Itabashi-ku, Tokyo 173-8610 (Japan); Kagechika, Hiroyuki [Graduate School of Biomedical Science, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University, 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062 (Japan); Makishima, Makoto, E-mail: makishima.makoto@nihon-u.ac.jp [Division of Biochemistry, Department of Biomedical Sciences, Nihon University School of Medicine, 30-1 Oyaguchi-kamicho, Itabashi-ku, Tokyo 173-8610 (Japan)

    2012-02-24

    Highlights: Black-Right-Pointing-Pointer The function of RXR heterodimers with NR4 receptors remains unknown. Black-Right-Pointing-Pointer The RXR ligand HX600 induces expression of carnitine palmitoyltransferase 1A (CPT1A). Black-Right-Pointing-Pointer HX600-induced CPT1A expression is mediated by the NR4 receptors, Nur77 and NURR1. Black-Right-Pointing-Pointer CPT1A induction by HX600 is not mediated by de novo protein synthesis. Black-Right-Pointing-Pointer CPT1A could be a target of the Nur77-RXR and NURR1-RXR heterodimers. -- Abstract: Retinoid X receptors (RXRs) are members of the nuclear receptor superfamily and can be activated by 9-cis retinoic acid (9CRA). RXRs form homodimers and heterodimers with other nuclear receptors such as the retinoic acid receptor and NR4 subfamily nuclear receptors, Nur77 and NURR1. Potential physiological roles of the Nur77-RXR and NURR1-RXR heterodimers have not been elucidated. In this study, we identified a gene regulated by these heterodimers utilizing HX600, a selective RXR agonist for Nur77-RXR and NURR1-RXR. While 9CRA induced many genes, including RAR-target genes, HX600 effectively induced only carnitine palmitoyltransferase 1A (CPT1A) in human teratocarcinoma NT2/D1 cells, which express RXR{alpha}, Nur77 and NURR1. HX600 also increased CPT1A expression in human embryonic kidney (HEK) 293 cells and hepatocyte-derived HepG2 cells. Although HX600 induced CPT1A less effectively than 9CRA, overexpression of Nur77 or NURR1 increased the HX600 response to levels similar to 9CRA in NT2/D1 and HEK293 cells. A dominant-negative form of Nur77 or NURR1 repressed the induction of CPT1A by HX600. A protein synthesis inhibitor did not alter HX600-dependent CPT1A induction. Thus, the rexinoid HX600 directly induces expression of CPT1A through a Nur77 or NURR1-mediated mechanism. CPT1A, a gene involved in fatty acid {beta}-oxidation, could be a target of RXR-NR4 receptor heterodimers.

  12. A Quarantine Harmful Plant: Amaranthus rudis%一种检疫性有害植物——西部苋

    Institute of Scientific and Technical Information of China (English)

    虞赟; 于文涛; 郭琼霞; 沈建国; 李敏; 连德福

    2012-01-01

    This paper presented the geographical distribution, morphological characteristics, biological characteristics, harmful-ness , transmission route and prevention method of quarantine harmful plant Amaranthus rudis, and detailedly described the morphological differences between Amaranthus rudis and its close species Amaranthus viridis.%阐述了检疫性有害植物西部苋的地理分布、形态特征、生物学特性、危害性、传播途径及防治方法,详细描述了西部苋与其近似种糙果苋在形态特征上的区别.

  13. Description of a nomen nudum species of Liriomyza Mik and the first record of Liriomyza blechi Spencer from Brazil (Insecta: Diptera: Agromyzidae).

    Science.gov (United States)

    Carvalho-Filho, Fernando Da Silva; Almeida, Flávio Roberto De Albuquerque; Esposito, Maria Cristina

    2016-01-01

    The nomen nudum Liriomyza flagellae is formerly described in this paper as Liriomyza valladaresae sp. nov., based on male and female specimens collected in the Brazilian Amazon and reared from leaves of Alternanthera tenella and Amaranthus viridis (Amaranthaceae). Information on the puparium and the biology of this new species are provided. The species Liriomyza blechi, previously recorded from the U.S.A., Guadeloupe and Dominican Republic, is newly recorded from Brazil, reared from leaves of Blechum pyramidatum (Acanthaceae) and Spigelia anthelmia (Loganiaceae). PMID:27394352

  14. Genome sequencing and annotation of Amycolatopsis vancoresmycina strain DSM 44592T

    Directory of Open Access Journals (Sweden)

    Navjot Kaur

    2014-12-01

    Full Text Available We report the 9.0-Mb draft genome of Amycolatopsis vancoresmycina strain DSM 44592T, isolated from Indian soil sample; produces antibiotic vancoresmycin. Draft genome of strain DSM44592T consists of 9,037,069 bp with a G+C content of 71.79% and 8340 predicted protein coding genes and 57 RNAs. RAST annotation indicates that strains Streptomyces sp. AA4 (score 521, Saccharomonospora viridis DSM 43017 (score 400 and Actinosynnema mirum DSM 43827 (score 372 are the closest neighbors of the strain DSM 44592T.

  15. Novi prilozi poznavanju alohtone faune mekušaca uzduž ciparske obale: novi stražnjoškržnjaši u ciparskoj fauni

    OpenAIRE

    TSIAKKIROS, Louis; ZENETOS Argyro

    2011-01-01

    Nalazi nekoliko stranih vrsta stražnjoškržnjaša, prethodno nepoznatih na Cipru, potvrđuju da je širenje Indo-Pacifičkih vrsta sve izražajnije u istočnom dijelu Sredozemnog mora. U ovom radu se iznose podaci o pojavi četiri nove alohtone vrste zabilježene fotografijom tijekom vremenskog razdoblja od preko 8 godina. Zabilježene su slijedeće vrste: Chelidonura fulvipunctata, Chromodoris annulata, Flabellina rubrolineata i Hypselodoris infucata. Dodatno nalaz vrste Melibe viridis, koja se do tada...

  16. A checklist of malacofauna of the Vellar Estuarine Mangroves, India

    Directory of Open Access Journals (Sweden)

    K. Kesavan

    2009-07-01

    Full Text Available A survey conducted to know the diversity of malacofauna in Vellar estuarine mangroves (southeast coast of India. In this study, 13 species of molluscs (10 species of gastropods - Melampus ceylonicus, Cerithidea cingulata, Cassidula nucleus, Pythia plicata, Neritina (Dostia violacea, Littorina scabra, Littorina melanostoma, Ellobium aurisjudae, C. obtusa T. telescopium and Assiminea nitida and 3 species of bivalves - Perna viridis, Crassostrea madrasensis and Modiolus metcalfei were recorded. M. pulchella, C. obtusa, L. scabra and N. violacea were found arboreal. T. telescopium, C. cingulata and E. aurisjudae were found crawling on the intertidal mud.

  17. 水产加工

    Institute of Scientific and Technical Information of China (English)

    2004-01-01

    040728 多种方法测定经热处理的菲律宾翡翠贻贝中麻痹性贝毒毒素==Varied assays for PSP toxins in heat shocked Philippine green mussels(Perna viridis)[刊,英]/ Azanza M P V,Azanza R V,Ventura S R //J.Food.Safety.-2004,24(1).-249 ~261 毒性分析即用老鼠活体分析,受体结合分析及MIST-AlertTM快速测试盒进行免疫

  18. Induction of chlorophyll chimeras and chlorophyll mutations in mungbean (Vigna radiata) cv. T44

    International Nuclear Information System (INIS)

    Uniform and healthy seeds of mungbean (Vigna radiata) cv. T44 were exposed to varying doses of gamma rays, ethyl methane sulphonate (EMS) and combination treatment of gamma rays with EMS. The data were recorded for seed germination, plant survival, frequency and spectrum of chlorophyll chimeras in M1 and chlorophyll mutations in M2 generation. Among all, the combination treatments were found most effective for inducing chlorophyll chimeras and chlorophyll mutations than the gamma rays or EMS alone. Of the mutants under reference, the albino, xantha and chlorina showed monogenic recessive while viridis exhibited digenic recessive inheritance. (author). 8 refs., 2 tabs

  19. Herbicide-induced changes in 14CO2 uptake of leaves of some crop and weed species

    International Nuclear Information System (INIS)

    The effect of diuron or atrazine on the rate of photosynthetic 14CO2 uptake of two each crop (Pisum Sativum and Pennisetum typhoides) and weed species (Amaranthus viridis and Cyperus rotundus) was studied. The results indicated a marked inhibition of 14CO2 fixation of leaves within two hours after diuron or atrazine treatment. However the resistant plants were able to exhibit a recovery of the net photosynthetic rate subsequently while the susceptible plants failed to recover. The results suggested that even with fully open stomata and available NADPH, the normal CO2 fixation was not restored by herbicide treated leaves. (author)

  20. Ayahuasca: uma revisão dos aspectos farmacológicos e toxicológicos

    OpenAIRE

    Ana Paula Salum Pires; Carolina Dizioli Rodrigues Oliveira; Mauricio Yonamine

    2010-01-01

    A ayahuasca é uma bebida psicoativa originariamente utilizada em rituais de tribos indígenas da região amazônica. Esta bebida é preparada pela infusão de caules da Banisteriopsis caapi Morton, que contém β-carbolinas que são inibidoras da monoaminoxidase (MAO), e de folhas da Psychotria viridis Ruiz & Pavón, que contém o alucinógeno N,N-dimetiltriptamina (DMT). A enzima MAO degrada a DMT no fígado e intestino. No Brasil, a ayahuasca tem sido incorporada em rituais de grupos sincréticos re...

  1. [Isolation of Actinomycetes synthesizing proteases with thrombolytic activity].

    Science.gov (United States)

    Lysenko, S V; Salivonik, S M

    1988-01-01

    Proteases with the thrombolytic activity were studied in 212 strains of actinomycetes isolated from different soils of the Soviet Union. The cultures belonged to the genera Micromonospora, Nocardia and Streptomyces. Proteases were synthesized by 41% of the studied actinomycetes and some of their strains completely dissolved in vitro artificially obtained blood thrombi within 120-240 min. In the Streptomyces genus, more active strains were found in the groups Flavus, Fradia and Globisporus. The groups Olivaceus, Violaceus and Viridis had less active strains. PMID:3062331

  2. Survival and bioturbation effects of common marine macrofauna in coastal soils newly flooded with seawater

    DEFF Research Database (Denmark)

    Valdemarsen, Thomas Bruun; Quintana, Cintia Organo; Thorsen, Sandra Walløe;

    Low-lying coastal soils are at risk of being permanently flooded due to global sea level rise, but how will these areas develop as habitat for marine species? We conducted an experiment to evaluate the habitat quality of flooded soils for common marine polychaetes (Marenzelleria viridis, Nereis...... diversicolor and Scoloplos armiger). Soil cores were collected at Gyldensteen Beach (Northern Fyn, Denmark), where a 200 ha area is designated for flooding as part of a nature restoration project. Soils cores were experimentally flooded for 1 month before adding polychaetes. We measured the effect...

  3. Evaluación de extractos de ocho especies vegetales en el control de mildeo velloso (Peronospora destructor Berk) en cebolla de bulbo (Allium cepa L.)

    OpenAIRE

    Pedro Enrique Cubides-Hernández

    2015-01-01

    Extractos de ocho especies vegetales: eucalipto (Eucalytus globulus), cola de caballo (Equisetum bogotense), ortiga (Urtica urens), manzanilla (Matricaria chamomilla), caléndula (Calendula officinalis), yerbabuena (Menta viridis), ajo (Allium sativum) y clavo (Syzygum aromaticum), preparados por el método de decocción (100 g/l), fueron evaluados en cuanto a su eficiencia en el control de P. destructor en cebolla de bulbo. Se utilizó el diseño experimental de bloques al azar con cuatro repetic...

  4. Shipboard assessment of hearing sensitivity of tropical fishes immediately after exposure to seismic air gun emissions at Scott Reef.

    Science.gov (United States)

    Hastings, Mardi C; Miksis-Olds, Jennifer

    2012-01-01

    This is the first study to examine the potential effects of emissions from an air gun array on hearing of tropical reef fish using AEP thresholds measured in the field. Over 7 days, 51 Chromis viridis,47 Lutjanus kasmira, 20 Myripristis murdjan, and 10 Sargocentron spiniferum were tested. AEP thresholds were determined before and after exposure to emissions from one or two passes of an airgun array. Temporary threshold shift resulting from sound exposure was not found in any species,even when cumulative sound exposure levels reached 190 dB re 1 μPa2-s.

  5. Atividade residual de herbicidas aplicados ao solo em relação ao controle de quatro espécies de Amaranthus Residual activity of herbicides applied to the soil in relation to control of four Amaranthus Species

    OpenAIRE

    M.A. Raimondi; R.S. Oliveira Jr; Constantin, J; D.F. Biffe; J.G.Z Arantes; L.H. Franchini; F.A Rios; E. Blainski; J.B Osipe

    2010-01-01

    Herbicidas aplicados em pré-emergência normalmente apresentam atividade residual no solo, controlando os primeiros fluxos germinativos das plantas daninhas e prevenindo a matocompetição inicial. O objetivo deste trabalho foi verificar o período de atividade residual proporcionado por doses de herbicidas suficientes para o controle pontual de 95% (C95) das espécies Amaranthus hybridus, A. lividus, A. spinosus e A. viridis, além de avaliar doses recomendadas desses herbicidas. O trabalho foi re...

  6. Positive Control Mutations in the MyoD Basic Region Fail to Show Cooperative DNA Binding and Transcriptional Activation in vitro

    Science.gov (United States)

    Bengal, Eyal; Flores, Osvaldo; Rangarajan, Pundi N.; Chen, Amy; Weintraub, Harold; Verma, Inder M.

    1994-06-01

    An in vitro transcription system from HeLa cells has been established in which MyoD and E47 proteins activate transcription both as homodimers and heterodimers. However, heterodimers activate transcription more efficiently than homodimers, and function synergistically from multiple binding sites. Positive control mutants in the basic region of MyoD that have previously been shown to be defective in initiating the myogenic program, can bind DNA but have lost their ability to function as transcriptional activators in vitro. Additionally, positive control mutants, unlike wild-type MyoD, fail to bind cooperatively to DNA. We propose that binding of MyoD complexes to high affinity MyoD binding sites induces conformational changes that facilitate cooperative binding to multiple sites and promote transcriptional activation.

  7. Ab initio study of 1:1 complexes of nitrogen trifluoride with nitrous oxide and carbon dioxide in vacuo

    Indian Academy of Sciences (India)

    Abdolvahab Seif; R Bagherzadeh; Moein Goodarzi; Khaled Azizi

    2013-09-01

    Quantum chemical calculations are carried out in order to investigate the heterodimers of NF3 with isoelectronic and isostructure species of N2O and CO2 in gas phase within the MP2 (Møller-Plesset perturbation) and CCSD(T) levels. Three and four minima are located on the potential energy surfaces of NF3-CO2 and NF3-N2O systems at the MP2/aug-cc-PVDZ level, respectively. Single-point energy calculations at the MP2/aug-cc-PVTZ and CCSD(T)/aug-cc-PVDZ levels confirm results obtained at the MP2/aug-cc-PVDZ level show that atmospheric roles of NF3-N2O and NF3-CO2 systems are similar. The atom in molecules theory was applied to analyse the nature of intermolecular interactions. Also, natural bond orbital (NBO) analysis has been used in order to obtain charge transfer quota among heterodimers.

  8. A monomeric G protein-coupled receptor isolated in a high-density lipoprotein particle efficiently activates its G protein

    DEFF Research Database (Denmark)

    Whorton, Matthew R; Bokoch, Michael P; Rasmussen, Søren Gøgsig Faarup;

    2007-01-01

    G protein-coupled receptors (GPCRs) respond to a diverse array of ligands, mediating cellular responses to hormones and neurotransmitters, as well as the senses of smell and taste. The structures of the GPCR rhodopsin and several G proteins have been determined by x-ray crystallography, yet...... the organization of the signaling complex between GPCRs and G proteins is poorly understood. The observations that some GPCRs are obligate heterodimers, and that many GPCRs form both homo- and heterodimers, has led to speculation that GPCR dimers may be required for efficient activation of G proteins. However......, technical limitations have precluded a definitive analysis of G protein coupling to monomeric GPCRs in a biochemically defined and membrane-bound system. Here we demonstrate that a prototypical GPCR, the beta2-adrenergic receptor (beta2AR), can be incorporated into a reconstituted high-density lipoprotein...

  9. In vitro production and characterization of partly assembled human CD3 complexes

    DEFF Research Database (Denmark)

    Kastrup, J; Pedersen, L Ø; Dietrich, J;

    2002-01-01

    in Golgi apparatus before the fully assembled T-cell receptor is transported to the cell surface. To study the structural properties of the human CD3 chains, we have developed new methods to produce and fold the extracellular domains of CD3 gamma, CD3 delta and CD3 epsilon. Proteins were expressed in......Pairwise assembly of human CD3 chains takes place in the endoplasmic reticulum of T cells. Subsequently, the CD3 heterodimers form complexes with Ti alpha and Tiss chains forming hexameric Ti alpha beta CD3 gamma epsilon delta epsilon complexes. Finally, association with the zeta 2 homodimer occurs...... Escherichia coli as denatured chains and de novo folded in vitro. CD3 gamma and CD3 epsilon folded as soluble monomers, whereas CD3 delta did not yield any soluble proteins. When folding the chains pairwise, soluble CD3 gamma epsilon and CD3 delta epsilon heterodimers could be isolated, whereas CD3 gamma...

  10. AcsA-AcsB: The core of the cellulose synthase complex from Gluconacetobacter hansenii ATCC23769.

    Science.gov (United States)

    McManus, John B; Deng, Ying; Nagachar, Nivedita; Kao, Teh-hui; Tien, Ming

    2016-01-01

    The gram-negative bacterium, Gluconacetobacter hansenii, produces cellulose of exceptionally high crystallinity in comparison to the cellulose of higher plants. This bacterial cellulose is synthesized and extruded into the extracellular medium by the cellulose synthase complex (CSC). The catalytic component of this complex is encoded by the gene AcsAB. However, several other genes are known to encode proteins critical to cellulose synthesis and are likely components of the bacterial CSC. We have purified an active heterodimer AcsA-AcsB from G. hansenii ATCC23769 to homogeneity by two different methods. With the purified protein, we have determined how it is post-translationally processed, forming the active heterodimer AcsA-AcsB. Additionally, we have performed steady-state kinetic studies on the AcsA-AcsB complex. Finally through mutagenesis studies, we have explored the roles of the postulated CSC proteins AcsC, AcsD, and CcpAx.

  11. Tetrel, chalcogen, and CH⋅⋅O hydrogen bonds in complexes pairing carbonyl-containing molecules with 1, 2, and 3 molecules of CO2

    International Nuclear Information System (INIS)

    The complexes formed by H2CO, CH3CHO, and (CH3)2CO with 1, 2, and 3 molecules of CO2 are studied by ab initio calculations. Three different types of heterodimers are observed, most containing a tetrel bond to the C atom of CO2, and some supplemented by a CH⋅⋅O H-bond. One type of heterodimer is stabilized by an anti-parallel arrangement of the C=O bonds of the two molecules. The binding energies are enhanced by methyl substitution on the carbonyl, and vary between 2.4 and 3.5 kcal/mol. Natural bond orbital analysis identifies a prime source of interaction as charge transfer into the π*(CO) antibonding orbital. Heterotrimers and tetramers carry over many of the geometrical and bonding features of the binary complexes, but also introduce O⋅⋅O chalcogen bonds. These larger complexes exhibit only small amounts of cooperativity

  12. Sumoylation of SAE2 C terminus regulates SAE nuclear localization.

    Science.gov (United States)

    Truong, Khue; Lee, Terry D; Li, Baozong; Chen, Yuan

    2012-12-14

    SUMOylation occurs predominantly in the nucleus, but non-nuclear proteins can also be SUMOylated. It is unclear how intracellular trafficking of the SUMOylation enzymes is regulated to catalyze SUMOylation in different cellular compartments. Here we report that the SAE2 subunit of human SUMO activation enzyme (SAE) underwent rapid nucleocytoplasmic shuttling and its nuclear accumulation depended on SUMO modification at the C terminus. The SUMOylation sites included three Lys residues on the bipartite nuclear localization sequence (NLS) and two Lys residues outside of but adjacent to the NLS, and their SUMOylation was catalyzed by Ubc9. Because SAE2 forms a tight heterodimer with SAE1 and it controls the trafficking of the heterodimer, this study has identified the mechanism used to localize SAE to the nucleus. Similar mechanisms are likely to exist for other proteins that depend on SUMOylation for nuclear localization.

  13. Suppression of OsKu80 results in defects in developmental growth and increased telomere length in rice (Oryza sativa L.).

    Science.gov (United States)

    Byun, Mi Young; Cui, Li Hua; Kim, Woo Taek

    2015-12-25

    The Ku70-Ku80 heterodimer plays a critical role in the maintenance of genomic stability in humans and yeasts. In this report, we identified and characterized OsKu80 in rice, a model monocot crop. OsKu80 forms a heterodimer with OsKu70 in yeast and plant cells, as demonstrated by yeast two-hybrid, in vivo co-immunoprecipitation, and bimolecular fluorescence complementation assays. RNAi-mediated knock-down T3 transgenic rice plants (Ubi:RNAi-OsKu80) displayed a retarded growth phenotype at the post-germination stage. In addition, the Ubi:RNAi-OsKu80 knock-down progeny exhibited noticeably increased telomere length as compared to wild-type rice. These results are discussed with the idea that OsKu80 plays a role in developmental growth and telomere length regulation in rice plants.

  14. Identification of peroxisome-proliferator responsive element in the mouse HSL gene.

    Science.gov (United States)

    Yajima, Hiroaki; Kobayashi, Yumie; Kanaya, Tomoka; Horino, Yoko

    2007-01-12

    Hormone-sensitive lipase (HSL) catalyzes the rate-limiting step of lipolysis in adipose tissue. Several studies suggest that protein phosphorylation regulates the HSL enzymatic activity. On the other hand, the precise mechanism of the transcriptional regulation of the HSL gene remains to be elucidated. Here, we identified a functional peroxisome-proliferator responsive element (PPRE) in the mouse HSL promoter by reporter assay in CV-1 cells using serial deletion and point mutants of the 5'-flanking region. Chromatin immunoprecipitation (ChIP) analysis revealed that both peroxisome-proliferator activated receptor (PPARgamma) and retinoid X receptor (RXRalpha) interacted with the region. Binding of the PPARgamma/RXRalpha heterodimer to the PPRE sequence was also confirmed by electrophoretic mobility shift assay. These results indicate that the HSL gene is transcriptionally regulated by PPARgamma/RXRalpha heterodimer, and suggest that a cis-acting element regulates the HSL gene expression.

  15. Nonlinear Dynamics of Dipoles in Microtubules: Pseudo-Spin Model

    CERN Document Server

    Nesterov, Alexander I; Berman, Gennady P; Mavromatos, Nick E

    2016-01-01

    We perform a theoretical study of the dynamics of the electric field excitations in a microtubule by taking into consideration the realistic cylindrical geometry, dipole-dipole interactions of the tubulin-based protein heterodimers, the radial electric field produced by the solvent, and a possible degeneracy of energy states of individual heterodimers. The consideration is done in the frames of the classical pseudo-spin model. We derive the system of nonlinear dynamical ordinary differential equations of motion for interacting dipoles, and the continuum version of these equations. We obtain the solutions of these equations in the form of snoidal waves, solitons, kinks, and localized spikes. Our results will help to a better understanding of the functional properties of microtubules including the motor protein dynamics and the information transfer processes. Our considerations are based on classical dynamics. Some speculations on the role of possible quantum effects are also made.

  16. ERAP1-ERAP2 dimerization increases peptide-trimming efficiency.

    Science.gov (United States)

    Evnouchidou, Irini; Weimershaus, Mirjana; Saveanu, Loredana; van Endert, Peter

    2014-07-15

    The endoplasmic reticulum aminopeptidases (ERAP)1 and ERAP2 play a critical role in the production of final epitopes presented by MHC class I molecules. Formation of heterodimers by ERAP1 and ERAP2 has been proposed to facilitate trimming of epitope precursor peptides, but the effects of dimerization on ERAP function remain unknown. In this study, we produced stabilized ERAP1-ERAP2 heterodimers and found that they produced several mature epitopes more efficiently than a mix of the two enzymes unable to dimerize. Physical interaction with ERAP2 changes basic enzymatic parameters of ERAP1 and improves its substrate-binding affinity. Thus, by bringing the two enzymes in proximity and by producing allosteric effects on ERAP1, dimerization of ERAP1/2 creates complexes with superior peptide-trimming efficacy. Such complexes are likely to enhance Ag presentation by cells displaying coordinated expression of the two enzymes. PMID:24928998

  17. The transcription factor Rbf1 is the master regulator for b-mating type controlled pathogenic development in Ustilago maydis.

    Directory of Open Access Journals (Sweden)

    Kai Heimel

    Full Text Available In the phytopathogenic basidiomycete Ustilago maydis, sexual and pathogenic development are tightly connected and controlled by the heterodimeric bE/bW transcription factor complex encoded by the b-mating type locus. The formation of the active bE/bW heterodimer leads to the formation of filaments, induces a G2 cell cycle arrest, and triggers pathogenicity. Here, we identify a set of 345 bE/bW responsive genes which show altered expression during these developmental changes; several of these genes are associated with cell cycle coordination, morphogenesis and pathogenicity. 90% of the genes that show altered expression upon bE/bW-activation require the zinc finger transcription factor Rbf1, one of the few factors directly regulated by the bE/bW heterodimer. Rbf1 is a novel master regulator in a multilayered network of transcription factors that facilitates the complex regulatory traits of sexual and pathogenic development.

  18. Beta1 integrins differentially control extravasation of inflammatory cell subsets into the CNS during autoimmunity

    DEFF Research Database (Denmark)

    Bauer, Martina; Brakebusch, Cord; Coisne, Caroline;

    2009-01-01

    Inhibiting the alpha(4) subunit of the integrin heterodimers alpha(4)beta(1) and alpha(4)beta(7) with the monoclonal antibody natalizumab is an effective treatment for multiple sclerosis (MS). However, the pharmacological action of natalizumab is not understood conclusively. Previous studies...... suggested that natalizumab inhibits activation, proliferation, or extravasation of inflammatory cells. To specify which mechanisms, cell types, and alpha(4) heterodimers are affected by the antibody treatment, we studied MS-like experimental autoimmune encephalomyelitis (EAE) in mice lacking the beta(1......)-integrin gene either in all hematopoietic cells or selectively in T lymphocytes. Our results show that T cells critically rely on beta(1) integrins to accumulate in the central nervous system (CNS) during EAE, whereas CNS infiltration of beta(1)-deficient myeloid cells remains unaffected, suggesting that T...

  19. Identification of Bexarotene as a PPARγ Antagonist with HDX

    Directory of Open Access Journals (Sweden)

    David P. Marciano

    2015-01-01

    Full Text Available The retinoid x receptors (RXRs are the pharmacological target of Bexarotene, an antineoplastic agent indicated for the treatment of cutaneous T cell lymphoma (CTCL. The RXRs form heterodimers with several nuclear receptors (NRs, including peroxisome proliferator-activated receptor gamma (PPARγ, to regulate target gene expression through cooperative recruitment of transcriptional machinery. Here we have applied hydrogen/deuterium exchange (HDX mass spectrometry to characterize the effects of Bexarotene on the conformational plasticity of the intact RXRα:PPARγ heterodimer. Interestingly, addition of Bexarotene to PPARγ in the absence of RXRα induced protection from solvent exchange, suggesting direct receptor binding. This observation was confirmed using a competitive binding assay. Furthermore, Bexarotene functioned as a PPARγ antagonist able to alter rosiglitazone induced transactivation in a cell based promoter:reporter transactivation assay. Together these results highlight the complex polypharmacology of lipophilic NR targeted small molecules and the utility of HDX for identifying and characterizing these interactions.

  20. Possible Role of Interference and Sink Effects in Nonphotochemical Quenching in Photosynthetic Complexes

    CERN Document Server

    Berman, Gennady P; Gurvitz, Shmuel; Sayre, Richard T

    2014-01-01

    We describe a simple and consistent quantum mathematical model that simulates the possible role of quantum interference and sink effects in the nonphotochemical quenching (NPQ) in light-harvesting complexes (LHCs). Our model consists of a network of five interconnected sites (excitonic states) responsible for the NPQ mechanism: (i) Two excited states of chlorophyll molecules, $ChlA^*$ and $ChlB^*$, forming an LHC dimer, which is initially populated; (ii) A "damaging" site which is responsible for production of singlet oxygen and other destructive outcomes; (iii) The $(ChlA-Zea)^*$ heterodimer excited state (Zea indicates zeaxanthin); and (iv) The charge transfer state of this heterodimer, $(ChlA^{-}-Zea^{+})^*$. In our model, both damaging and charge transfer states are described by discrete electron energy levels attached to their sinks, that mimic the continuum part of electron energy spectrum, as at these sites the electron participates in quasi-irreversible chemical reactions. All five excitonic sites int...