WorldWideScience

Sample records for biomolecular arraying applications

  1. Application of Nanodiamonds in Biomolecular Mass Spectrometry

    Directory of Open Access Journals (Sweden)

    Ping Cheng

    2010-03-01

    Full Text Available The combination of nanodiamond (ND with biomolecular mass spectrometry (MS makes rapid, sensitive detection of biopolymers from complex biosamples feasible. Due to its chemical inertness, optical transparency and biocompatibility, the advantage of NDs in MS study is unique. Furthermore, functionalization on the surfaces of NDs expands their application in the fields of proteomics and genomics for specific requirements greatly. This review presents methods of MS analysis based on solid phase extraction and elution on NDs and different application examples including peptide, protein, DNA, glycan and others. Owing to the quick development of nanotechnology, surface chemistry, new MS methods and the intense interest in proteomics and genomics, a huge increase of their applications in biomolecular MS analysis in the near future can be predicted.

  2. Application of Nanodiamonds in Biomolecular Mass Spectrometry

    OpenAIRE

    Ping Cheng; Xianglei Kong

    2010-01-01

    The combination of nanodiamond (ND) with biomolecular mass spectrometry (MS) makes rapid, sensitive detection of biopolymers from complex biosamples feasible. Due to its chemical inertness, optical transparency and biocompatibility, the advantage of NDs in MS study is unique. Furthermore, functionalization on the surfaces of NDs expands their application in the fields of proteomics and genomics for specific requirements greatly. This review presents methods of MS analysis based on solid phase...

  3. Nanoarchitectonics of biomolecular assemblies for functional applications

    Science.gov (United States)

    Avinash, M. B.; Govindaraju, T.

    2014-10-01

    The stringent processes of natural selection and evolution have enabled extraordinary structure-function properties of biomolecules. Specifically, the archetypal designs of biomolecules, such as amino acids, nucleobases, carbohydrates and lipids amongst others, encode unparalleled information, selectivity and specificity. The integration of biomolecules either with functional molecules or with an embodied functionality ensures an eclectic approach for novel and advanced nanotechnological applications ranging from electronics to biomedicine, besides bright prospects in systems chemistry and synthetic biology. Given this intriguing scenario, our feature article intends to shed light on the emerging field of functional biomolecular engineering.

  4. Recent applications of AC electrokinetics in biomolecular analysis on microfluidic devices.

    Science.gov (United States)

    Sasaki, Naoki

    2012-01-01

    AC electrokinetics is a generic term that refers to an induced motion of particles and fluids under nonuniform AC electric fields. The AC electric fields are formed by application of AC voltages to microelectrodes, which can be easily integrated into microfluidic devices by standard microfabrication techniques. Moreover, the magnitude of the motion is large enough to control the mass transfer on the devices. These advantages are attractive for biomolecular analysis on the microfluidic devices, in which the characteristics of small space and microfluidics have been mainly employed. In this review, I describe recent applications of AC electrokinetics in biomolecular analysis on microfluidic devices. The applications include fluid pumping and mixing by AC electrokinetic flow, and manipulation of biomolecules such as DNA and proteins by various AC electrokinetic techniques. Future prospects for highly functional biomolecular analysis on microfluidic devices with the aid of AC electrokinetics are also discussed.

  5. Rational Design of Biomolecular Templates for Synthesizing Multifunctional Noble Metal Nanoclusters toward Personalized Theranostic Applications.

    Science.gov (United States)

    Yu, Yong; Mok, Beverly Y L; Loh, Xian Jun; Tan, Yen Nee

    2016-08-01

    Biomolecule-templated or biotemplated metal nanoclusters (NCs) are ultrasmall (<2 nm) metal (Au, Ag) particles stabilized by a certain type of biomolecular template (e.g., peptides, proteins, and DNA). Due to their unique physiochemical properties, biotemplated metal NCs have been widely used in sensing, imaging, delivery and therapy. The overwhelming applications in these individual areas imply the great promise of harnessing biotemplated metal NCs in more advanced biomedical aspects such as theranostics. Although applications of biotemplated metal NCs as theranostic agents are trending, the rational design of biomolecular templates suitable for the synthesis of multifunctional metal NCs for theranostics is comparatively underexplored. This progress report first identifies the essential attributes of biotemplated metal NCs for theranostics by reviewing the state-of-art applications in each of the four modalities of theranostics, namely sensing, imaging, delivery and therapy. To achieve high efficacy in these modalities, we elucidate the design principles underlying the use of biomolecules (proteins, peptides and nucleic acids) to control the NC size, emission color and surface chemistries for post-functionalization of therapeutic moieties. We then propose a unified strategy to engineer biomolecular templates that combine all these modalities to produce multifunctional biotemplated metal NCs that can serve as the next-generation personalized theranostic agents.

  6. Surface-enhanced Raman spectroscopy bioanalytical, biomolecular and medical applications

    CERN Document Server

    Procházka, Marek

    2016-01-01

    This book gives an overview of recent developments in RS and SERS for sensing and biosensing considering also limitations, possibilities and prospects of this technique. Raman scattering (RS) is a widely used vibrational technique providing highly specific molecular spectral patterns. A severe limitation for the application of this spectroscopic technique lies in the low cross section of RS. Surface-enhanced Raman scattering (SERS) spectroscopy overcomes this problem by 6-11 orders of magnitude enhancement compared with the standard RS for molecules in the close vicinity of certain rough metal surfaces. Thus, SERS combines molecular fingerprint specificity with potential single-molecule sensitivity. Due to the recent development of new SERS-active substrates, labeling and derivatization chemistry as well as new instrumentations, SERS became a very promising tool for many varied applications, including bioanalytical studies and sensing. Both intrinsic and extrinsic SERS biosensing schemes have been employed to...

  7. Scanning probe and micropatterning approaches for biomolecular screening applications

    CERN Document Server

    Wilde, L M

    2002-01-01

    Force mapping using atomic force microscopy (AFM) allows for the simultaneous acquisition of topography and probe-sample interaction data. For example, AFM probes functionalised with an antigen can be employed to map the spatial distribution of recognition events on a substrate functionalised with the complementary specific antibody. However, this technique is currently limited to the detection of a single receptor-ligand species. Were the detection of multiple receptor-ligand interactions possible, AFM force mapping would offer greater scope as a sensitive tool for bioassay and screening applications. This thesis outlines developments in probe and substrate immobilisation methods to facilitate this process. We have developed an immobilisation strategy, which allows two antigen species, human serum albumin (HSA) and the beta subunit of human chorionic gonadotropin (beta hCG) to be simultaneously present on an AFM probe. Single point force spectroscopy results have revealed the ability of such probes to discri...

  8. Tailored surface-enhanced Raman nanopillar arrays fabricated by laser-assisted replication for biomolecular detection using organic semiconductor lasers.

    Science.gov (United States)

    Liu, Xin; Lebedkin, Sergei; Besser, Heino; Pfleging, Wilhelm; Prinz, Stephan; Wissmann, Markus; Schwab, Patrick M; Nazarenko, Irina; Guttmann, Markus; Kappes, Manfred M; Lemmer, Uli

    2015-01-27

    Organic semiconductor distributed feedback (DFB) lasers are of interest as external or chip-integrated excitation sources in the visible spectral range for miniaturized Raman-on-chip biomolecular detection systems. However, the inherently limited excitation power of such lasers as well as oftentimes low analyte concentrations requires efficient Raman detection schemes. We present an approach using surface-enhanced Raman scattering (SERS) substrates, which has the potential to significantly improve the sensitivity of on-chip Raman detection systems. Instead of lithographically fabricated Au/Ag-coated periodic nanostructures on Si/SiO2 wafers, which can provide large SERS enhancements but are expensive and time-consuming to fabricate, we use low-cost and large-area SERS substrates made via laser-assisted nanoreplication. These substrates comprise gold-coated cyclic olefin copolymer (COC) nanopillar arrays, which show an estimated SERS enhancement factor of up to ∼ 10(7). The effect of the nanopillar diameter (60-260 nm) and interpillar spacing (10-190 nm) on the local electromagnetic field enhancement is studied by finite-difference-time-domain (FDTD) modeling. The favorable SERS detection capability of this setup is verified by using rhodamine 6G and adenosine as analytes and an organic semiconductor DFB laser with an emission wavelength of 631.4 nm as the external fiber-coupled excitation source.

  9. Advances in biomolecular surface meshing and its applications to mathematical modeling

    Institute of Scientific and Technical Information of China (English)

    CHEN MinXin; LU BenZhuo

    2013-01-01

    In the field of molecular modeling and simulation,molecular surface meshes are necessary for many problems,such as molecular structure visualization and analysis,docking problem and implicit solvent modeling and simulation.Recently,with the developments of advanced mathematical modeling in the field of implicit solvent modeling and simulation,providing surface meshes with good qualities efficiently for large real biomolecular systems becomes an urgent issue beyond its traditional purposes for visualization and geometry analyses for molecular structure.In this review,we summarize recent works on this issue.First,various definitions of molecular surfaces and corresponding meshing methods are introduced.Second,our recent meshing tool,TMSmesh,and its performances are presented.Finally,we show the applications of the molecular surface mesh in implicit solvent modeling and simulations using boundary element method (BEM) and finite element method (FEM).

  10. Application of peptide nucleic acid towards development of nanobiosensor arrays.

    Science.gov (United States)

    Singh, Ravindra P; Oh, Byung-Keun; Choi, Jeong-Woo

    2010-10-01

    Peptide nucleic acid (PNA) is the modified DNA or DNA analogue with a neutral peptide backbone instead of a negatively charged sugar phosphate. PNA exhibits chemical stability, resistant to enzymatic degradation inside living cell, recognizing specific sequences of nucleic acid, formation of stable hybrid complexes like PNA/DNA/PNA triplex, strand invasion, extraordinary thermal stability and ionic strength, and unique hybridization relative to nucleic acids. These unique physicobiochemical properties of PNA enable a new mode of detection, which is a faster and more reliable analytical process and finds applications in the molecular diagnostics and pharmaceutical fields. Besides, a variety of unique characteristic features, PNAs replace DNA as a probe for biomolecular tool in the molecular genetic diagnostics, cytogenetics, and various pharmaceutical potentials as well as for the development of sensors/arrays/chips and many more investigation purposes. This review paper discusses the various current aspects related with PNAs, making a new hot device in the commercial applications like nanobiosensor arrays.

  11. Phase sensitive spectral domain interferometry for label free biomolecular interaction analysis and biosensing applications

    Science.gov (United States)

    Chirvi, Sajal

    Biomolecular interaction analysis (BIA) plays vital role in wide variety of fields, which include biomedical research, pharmaceutical industry, medical diagnostics, and biotechnology industry. Study and quantification of interactions between natural biomolecules (proteins, enzymes, DNA) and artificially synthesized molecules (drugs) is routinely done using various labeled and label-free BIA techniques. Labeled BIA (Chemiluminescence, Fluorescence, Radioactive) techniques suffer from steric hindrance of labels on interaction site, difficulty of attaching labels to molecules, higher cost and time of assay development. Label free techniques with real time detection capabilities have demonstrated advantages over traditional labeled techniques. The gold standard for label free BIA is surface Plasmon resonance (SPR) that detects and quantifies the changes in refractive index of the ligand-analyte complex molecule with high sensitivity. Although SPR is a highly sensitive BIA technique, it requires custom-made sensor chips and is not well suited for highly multiplexed BIA required in high throughput applications. Moreover implementation of SPR on various biosensing platforms is limited. In this research work spectral domain phase sensitive interferometry (SD-PSI) has been developed for label-free BIA and biosensing applications to address limitations of SPR and other label free techniques. One distinct advantage of SD-PSI compared to other label-free techniques is that it does not require use of custom fabricated biosensor substrates. Laboratory grade, off-the-shelf glass or plastic substrates of suitable thickness with proper surface functionalization are used as biosensor chips. SD-PSI is tested on four separate BIA and biosensing platforms, which include multi-well plate, flow cell, fiber probe with integrated optics and fiber tip biosensor. Sensitivity of 33 ng/ml for anti-IgG is achieved using multi-well platform. Principle of coherence multiplexing for multi

  12. Biomolecular interactions and tools for their recognition: focus on the quartz crystal microbalance and its diverse surface chemistries and applications.

    Science.gov (United States)

    Cheng, Cathy I; Chang, Yi-Pin; Chu, Yen-Ho

    2012-03-07

    Interactions between molecules are ubiquitous and occur in our bodies, the food we eat, the air we breathe, and myriad additional contexts. Although numerous tools are available for the recognition of biomolecular interactions, such tools are often limited in their sensitivity, expensive, and difficult to modify for various uses. In contrast, the quartz crystal microbalance (QCM) has sub-nanogram detection capabilities, is label-free, is inexpensive to create, and can be readily modified with a number of diverse surface chemistries to detect and characterize diverse interactions. To maximize the versatility of the QCM, scientists need to know available methods by which QCM surfaces can be modified. Therefore, in addition to summarizing the various tools currently used for biomolecular recognition, explicating the fundamental principles of the QCM as a tool for biomolecular recognition, and comparing the QCM with other acoustic sensors, we systematically review the numerous types of surface chemistries-including hydrophobic bonds, ionic bonds, hydrogen bonds, self-assembled monolayers, plasma-polymerized films, photochemistry, and sensing ionic liquids-used to functionalize QCMs for various purposes. We also review the QCM's diverse applications, which include the detection of gaseous species, detection of carbohydrates, detection of nucleic acids, detection of non-enzymatic proteins, characterization of enzymatic activity, detection of antigens and antibodies, detection of cells, and detection of drugs. Finally, we discuss the ultimate goals of and potential barriers to the development of future QCMs.

  13. Global analysis of time-resolved fluorescence microspectroscopy and applications in biomolecular studies

    NARCIS (Netherlands)

    Laptenok, S.

    2009-01-01

    Understanding the properties of biomolecular networks is of central importance in life sciences. Optical microscopy has been very useful to determine the sub-cellular localisation of proteins but it cannot reveal whether proteins interact with one another. Micro-spectroscopic techniques (combining m

  14. A Theoretical Study of Distribution of First Passage Times of Biomolecular Folding and Reactions with Application to Single Molecules

    Science.gov (United States)

    Wang, Jin; Leite, Vitor; Stell, George; Lee, Chi-Lun

    2002-03-01

    We study the distribution of first passage times of biomolecular folding and reactions through the general framework of energy landscape theory. Both the analytical and lattice simulation results show above cirtain specific temperature, the distribution of first passage time is log-normal, while under the same temperature, the distribution starts to develop fatty tails and deviate from the log-normal distribution, indicating intermittency whereas rare events might dominate the whole process. A power law distribution of first passage time was found analytically in this situation. Applications and connections to experiments on single molecule reaction dynamics are studied.

  15. Application of isothermal titration calorimetry and column chromatography for identification of biomolecular targets.

    Science.gov (United States)

    Zhou, Xingding; Kini, R Manjunatha; Sivaraman, J

    2011-02-01

    This protocol describes a method for identifying unknown target proteins from a mixture of biomolecules for a given drug or a lead compound. This method is based on a combination of chromatography and isothermal titration calorimetry (ITC) where ITC is used as a tracking tool. The first step involves the use of ITC to confirm the binding of ligand to a component in the biomolecular mixture. Subsequently, the biomolecular mixture is fractionated by chromatography, and the binding of the ligand with individual fractions (or subfractions) is verified by ITC. The iteration of chromatographic purification on the fractions combined with ITC results in identifying the target protein. This method is useful when the target protein or ligand is unknown and/or not amenable to labeling, chemical modification or immobilization. This protocol has been successfully used by our team and by others to identify both low-abundance and highly abundant target proteins present in biomolecular mixtures. With this protocol, it takes approximately 3-5 d to identify the target protein from a mixture.

  16. Antenna Arrays and Automotive Applications

    CERN Document Server

    Rabinovich, Victor

    2013-01-01

    This book throws a lifeline to designers wading through mounds of antenna array patents looking for the most suitable systems for their projects. Drastically reducing the research time required to locate solutions to the latest challenges in automotive communications, it sorts and systematizes material on cutting-edge antenna arrays that feature multi-element communication systems with enormous potential for the automotive industry. These new systems promise to make driving safer and more efficient, opening up myriad applications, including vehicle-to-vehicle traffic that prevents collisions, automatic toll collection, vehicle location and fine-tuning for cruise control systems. This book’s exhaustive coverage begins with currently deployed systems, frequency ranges and key parameters. It proceeds to examine system geometry, analog and digital beam steering technology (including "smart" beams formed in noisy environments), maximizing signal-to-noise ratios, miniaturization, and base station technology that ...

  17. Acoustic array systems theory, implementation, and application

    CERN Document Server

    Bai, Mingsian R; Benesty, Jacob

    2013-01-01

    Presents a unified framework of far-field and near-field array techniques for noise source identification and sound field visualization, from theory to application. Acoustic Array Systems: Theory, Implementation, and Application provides an overview of microphone array technology with applications in noise source identification and sound field visualization. In the comprehensive treatment of microphone arrays, the topics covered include an introduction to the theory, far-field and near-field array signal processing algorithms, practical implementations, and common applic

  18. Application of Frontal Affinity Chromatography to Study the Biomolecular Interactions with Trypsin.

    Science.gov (United States)

    Hu, YuanYuan; Qian, Junqing; Guo, Hui; Jiang, ShengLan; Zhang, Zheng

    2015-07-01

    Trypsin is a serine protease that has been proposed as a potential therapeutic target for metabolic disorders and malignancy diseases, thus the identification of biomolecular interactions of compounds to trypsin could be of great therapeutic importance. In this study, trypsin was immobilized on a monolithic silica capillary column via sol-gel. The binding properties of four small molecules (daidzin, genistin, matrine and oxymatrine) to trypsin were examined using the trypsin affinity columns by frontal analysis. The results indicate that the matrine (dissociation constant, Kd = 7.904 μM) has stronger interaction with trypsin than the oxymatrine (Kd = 8.204 μM), whereas daidzin and genistin were nearly have no affinity with trypsin. The results demonstrated that the frontal affinity chromatography can be used for the direct determination of protein-protease inhibitor binding interactions and have several significant advantages, including easy fabricating, reproducible, minimal technological requirements and potential to become a reliable alternative for quantitative studies of biomolecular interactions.

  19. PUPIL: A Software Integration System for Multi-Scale QM/MM-MD Simulations and Its Application to Biomolecular Systems.

    Science.gov (United States)

    Torras, Juan; Roberts, Benjamin P; Seabra, Gustavo M; Trickey, Samuel B

    2015-01-01

    PUPIL (Program for User Package Interfacing and Linking) implements a distinctive multi-scale approach to hybrid quantum mechanical/molecular mechanical molecular dynamics (QM/MM-MD) simulations. Originally developed to interface different external programs for multi-scale simulation with applications in the materials sciences, PUPIL is finding increasing use in the study of complex biological systems. Advanced MD techniques from the external packages can be applied readily to a hybrid QM/MM treatment in which the forces and energy for the QM region can be computed by any of the QM methods available in any of the other external packages. Here, we give a survey of PUPIL design philosophy, main features, and key implementation decisions, with an orientation to biomolecular simulation. We discuss recently implemented features which enable highly realistic simulations of complex biological systems which have more than one active site that must be treated concurrently. Examples are given.

  20. Design of Flow Systems for Improved Networking and Reduced Noise in Biomolecular Signal Processing in Biocomputing and Biosensing Applications.

    Science.gov (United States)

    Verma, Arjun; Fratto, Brian E; Privman, Vladimir; Katz, Evgeny

    2016-07-05

    We consider flow systems that have been utilized for small-scale biomolecular computing and digital signal processing in binary-operating biosensors. Signal measurement is optimized by designing a flow-reversal cuvette and analyzing the experimental data to theoretically extract the pulse shape, as well as reveal the level of noise it possesses. Noise reduction is then carried out numerically. We conclude that this can be accomplished physically via the addition of properly designed well-mixing flow-reversal cell(s) as an integral part of the flow system. This approach should enable improved networking capabilities and potentially not only digital but analog signal-processing in such systems. Possible applications in complex biocomputing networks and various sense-and-act systems are discussed.

  1. Design of Flow Systems for Improved Networking and Reduced Noise in Biomolecular Signal Processing in Biocomputing and Biosensing Applications

    Directory of Open Access Journals (Sweden)

    Arjun Verma

    2016-07-01

    Full Text Available We consider flow systems that have been utilized for small-scale biomolecular computing and digital signal processing in binary-operating biosensors. Signal measurement is optimized by designing a flow-reversal cuvette and analyzing the experimental data to theoretically extract the pulse shape, as well as reveal the level of noise it possesses. Noise reduction is then carried out numerically. We conclude that this can be accomplished physically via the addition of properly designed well-mixing flow-reversal cell(s as an integral part of the flow system. This approach should enable improved networking capabilities and potentially not only digital but analog signal-processing in such systems. Possible applications in complex biocomputing networks and various sense-and-act systems are discussed.

  2. Grid computing and biomolecular simulation.

    Science.gov (United States)

    Woods, Christopher J; Ng, Muan Hong; Johnston, Steven; Murdock, Stuart E; Wu, Bing; Tai, Kaihsu; Fangohr, Hans; Jeffreys, Paul; Cox, Simon; Frey, Jeremy G; Sansom, Mark S P; Essex, Jonathan W

    2005-08-15

    Biomolecular computer simulations are now widely used not only in an academic setting to understand the fundamental role of molecular dynamics on biological function, but also in the industrial context to assist in drug design. In this paper, two applications of Grid computing to this area will be outlined. The first, involving the coupling of distributed computing resources to dedicated Beowulf clusters, is targeted at simulating protein conformational change using the Replica Exchange methodology. In the second, the rationale and design of a database of biomolecular simulation trajectories is described. Both applications illustrate the increasingly important role modern computational methods are playing in the life sciences.

  3. Variational Methods for Biomolecular Modeling

    CERN Document Server

    Wei, Guo-Wei

    2016-01-01

    Structure, function and dynamics of many biomolecular systems can be characterized by the energetic variational principle and the corresponding systems of partial differential equations (PDEs). This principle allows us to focus on the identification of essential energetic components, the optimal parametrization of energies, and the efficient computational implementation of energy variation or minimization. Given the fact that complex biomolecular systems are structurally non-uniform and their interactions occur through contact interfaces, their free energies are associated with various interfaces as well, such as solute-solvent interface, molecular binding interface, lipid domain interface, and membrane surfaces. This fact motivates the inclusion of interface geometry, particular its curvatures, to the parametrization of free energies. Applications of such interface geometry based energetic variational principles are illustrated through three concrete topics: the multiscale modeling of biomolecular electrosta...

  4. Biomolecular EPR spectroscopy

    CERN Document Server

    Hagen, Wilfred Raymond

    2008-01-01

    Comprehensive, Up-to-Date Coverage of Spectroscopy Theory and its Applications to Biological SystemsAlthough a multitude of books have been published about spectroscopy, most of them only occasionally refer to biological systems and the specific problems of biomolecular EPR (bioEPR). Biomolecular EPR Spectroscopy provides a practical introduction to bioEPR and demonstrates how this remarkable tool allows researchers to delve into the structural, functional, and analytical analysis of paramagnetic molecules found in the biochemistry of all species on the planet. A Must-Have Reference in an Intrinsically Multidisciplinary FieldThis authoritative reference seamlessly covers all important bioEPR applications, including low-spin and high-spin metalloproteins, spin traps and spin lables, interaction between active sites, and redox systems. It is loaded with practical tricks as well as do's and don'ts that are based on the author's 30 years of experience in the field. The book also comes with an unprecedented set of...

  5. New fabrication and applications of carbohydrate arrays.

    Science.gov (United States)

    Huang, Gangliang; Chen, Xin; Xiao, Feng

    2014-01-01

    Carbohydrate arrays are used as high-throughput screening platforms to study the carbohydrate-mediated recognition events for glycobiology. The polysaccharide arrays are easy to fabricate by non-covalently or covalently immobilizing polysaccharides onto array surfaces because polysaccharides have hydrophobic interactions. Oligosaccharides must be derived and covalently or non-covalently immobilized onto array surfaces to fabricate oligosaccharide arrays because they have hydrophilic interactions. At the moment, carbohydrate arrays are mainly used to study the carbohydrate-protein interactions and carbohydrate-binding lectins or antibodies, which are possible to be applied to clinics and diagnoses. This review mainly summed up the new fabrication strategies of carbohydrate arrays and their applications in recent four years.

  6. Stable isotope applications in biomolecular structure and mechanisms. A meeting to bring together producers and users of stable-isotope-labeled compounds to assess current and future needs

    Energy Technology Data Exchange (ETDEWEB)

    Trewhella, J.; Cross, T.A.; Unkefer, C.J. [eds.

    1994-12-01

    Knowledge of biomolecular structure is a prerequisite for understanding biomolecular function, and stable isotopes play an increasingly important role in structure determination of biological molecules. The first Conference on Stable Isotope Applications in Biomolecular Structure and Mechanisms was held in Santa Fe, New Mexico, March 27--31, 1994. More than 120 participants from 8 countries and 44 institutions reviewed significant developments, discussed the most promising applications for stable isotopes, and addressed future needs and challenges. Participants focused on applications of stable isotopes for studies of the structure and function of proteins, peptides, RNA, and DNA. Recent advances in NMR techniques neutron scattering, EPR, and vibrational spectroscopy were highlighted in addition to the production and synthesis of labeled compounds. This volume includes invited speaker and poster presentations as well as a set of reports from discussion panels that focused on the needs of the scientific community and the potential roles of private industry, the National Stable Isotope Resource, and the National High Magnetic Field Laboratory in serving those needs. This is the leading abstract. Individual papers are processed separately for the database.

  7. Application of isothermal titration calorimetry for characterizing thermodynamic parameters of biomolecular interactions: peptide self-assembly and protein adsorption case studies.

    Science.gov (United States)

    Kabiri, Maryam; Unsworth, Larry D

    2014-10-13

    The complex nature of macromolecular interactions usually makes it very hard to identify the molecular-level mechanisms that ultimately dictate the result of these interactions. This is especially evident in the case of biological systems, where the complex interaction of molecules in various situations may be responsible for driving biomolecular interactions themselves but also has a broader effect at the cell and/or tissue level. This review will endeavor to further the understanding of biomolecular interactions utilizing the isothermal titration calorimetry (ITC) technique for thermodynamic characterization of two extremely important biomaterial systems, viz., peptide self-assembly and nonfouling polymer-modified surfaces. The advantages and shortcomings of this technique will be presented along with a thorough review of the recent application of ITC to these two areas. Furthermore, the controversies associated with the enthalpy-entropy compensation effect as well as thermodynamic equilibrium state for such interactions will be discussed.

  8. Development of Cellulose-Based, Nanostructured, Conductive Paper for Biomolecular Extraction and Energy Storage Applications

    OpenAIRE

    Razaq, Aamir

    2011-01-01

    Conductive paper materials consisting of conductive polymers and cellulose are promising for high-tech applications (energy storage and biosciences) due to outstanding aspects of environmental friendliness, mechanical flexibility, electrical conductivity and efficient electroactive behavior. Recently, a conductive composite paper material was developed by covering the individual nanofibers of cellulose from the green algae Cladophora with a polypyrrole (PPy) layer. The PPy-Cladophora cellulos...

  9. Piezoresistive Foam Sensor Arrays for Marine Applications

    CERN Document Server

    Dusek, Jeff E; Lang, Jeffrey H

    2016-01-01

    Spatially-dense pressure measurements are needed on curved surfaces in marine environments to provide marine vehicles with the detailed, real-time measurements of the near-field flow necessary to improve performance through flow control. To address this challenge, a waterproof and conformal pressure sensor array comprising carbon black-doped-silicone closed-cell foam (CBPDMS foam) was developed for use in marine applications. The response of the CBPDMS foam sensor arrays was characterized using periodic hydrodynamic pressure stimuli from vertical plunging, from which a piecewise polynomial calibration was developed to describe the sensor response. Inspired by the distributed pressure and velocity sensing capabilities of the fish lateral line, the CBPDMS foam sensor arrays have significant advantages over existing commercial sensors for distributed flow reconstruction and control. Experimental results have shown the sensor arrays to have sensitivity on the order of 5 Pascal, dynamic range of 50-500 Pascal; are...

  10. Piezoresistive Probe Array for High Throughput Applications

    NARCIS (Netherlands)

    Gaitas, A.; French, P.

    2011-01-01

    Microcantilevers are used in a number of applications including atomic-force microscopy (AFM). In this work, piezoresistive deflection-sensing elements are integrated onto micromachined cantilevers to increase sensitivity, and reduce complexity and cost. An array of probes with 5 nm gold ultrathin f

  11. Conducting polymer based biomolecular electronic devices

    Indian Academy of Sciences (India)

    B D Malhotra; Rahul Singhal

    2003-08-01

    Biomolecular electronics is rapidly evolving from physics, chemistry, biology, electronics and information technology. Organic materials such as proteins, pigments and conducting polymers have been considered as alternatives for carrying out the functions that are presently being performed by semiconductor silicon. Conducting polymers such as polypyrroles, polythiophenes and polyanilines have been projected for applications for a wide range of biomolecular electronic devices such as optical, electronic, drug-delivery, memory and biosensing devices. Our group has been actively working towards the application of conducting polymers to Schottky diodes, metal–insulator–semiconductor (MIS) devices and biosensors for the past 10 years. This paper is a review of some of the results obtained at our laboratory in the area of conducting polymer biomolecular electronics.

  12. Programming in biomolecular computation

    DEFF Research Database (Denmark)

    Hartmann, Lars Røeboe; Jones, Neil; Simonsen, Jakob Grue

    2011-01-01

    Our goal is to provide a top-down approach to biomolecular computation. In spite of widespread discussion about connections between biology and computation, one question seems notable by its absence: Where are the programs? We identify a number of common features in programming that seem conspicu...

  13. Polymeric Cantilever Arrays for Biosensing Applications

    DEFF Research Database (Denmark)

    Calleja, M.; Tamayo, J.; Johansson, Alicia

    2003-01-01

    We report the fabrication of arrays of polymeric cantilevers for biochemistry applications. The cantilevers are fabricated in the polymer SU-8. The use of a polymer as the component material for the cantilevers provides the sensors with very high sensitivity due to convenient mechanical material...... properties. The fabrication process is based on spin coating of the photosensitive polymer and near-ultraviolet exposure. The method allows obtaining well-controlled and uniform mechanical properties of the cantilevers. The elastic constant of the cantilevers was measured, and their dynamic response...

  14. APPLICATION OF MICROPHONE ARRAYS FOR DISTANT SPEECH CAPTURE

    Directory of Open Access Journals (Sweden)

    M. B. Stolbov

    2015-07-01

    Full Text Available Application of microphone arrays and beamforming techniques for speech information collection has significant advantages compared to systems operating with a single microphone. This paper presents a brief overview of microphone array systems for collecting distant speech information. The paper is based on an analysis of publications on the use of microphone arrays for speech information collection tasks, as well as on the author’s experience in the development and practical application of planar microphone arrays. The paper describes the main stages of the development of systems for remote capture of audio information. It provides a review of the main applications of microphone arrays, the basic types of microphone arrays and their features. The bulk of the paper deals with planar microphone arrays. We analyze the work of microphone arrays in different acoustic environments. The paper contains the basic equations for calculating the parameters of equidistant planar microphone arrays. Some methods of designing non-equidistant arrays are also mentioned (a list of references is included. We also provide a list of basic digital signal processing algorithms for planar microphone arrays, as well as a list of references on processing algorithms in the frequency domain. The paper includes a list of foreign companies offering systems based on microphone arrays for a wide range of tasks associated with the processing of speech and audio signals. We describe some state-of-the-art speech information collection systems based on microphone arrays. Some promising directions for the development of speech information collection systems using microphone arrays are described in conclusion. The material of the review is usable in designing of microphone arrays for specific practical applications.

  15. Silver nanorod arrays for photocathode applications

    Energy Technology Data Exchange (ETDEWEB)

    Vilayurganapathy, Subramanian [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Western Michigan Univ., Kalamazoo MI (United States); Nandasiri, Manjula I. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Western Michigan Univ., Kalamazoo MI (United States); Joly, Alan G. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); El-Khoury, Patrick Z. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Varga, Tamas [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Coffey, Greg W. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Schwenzer, Birgit [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Pandey, Archana [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Kayani, Asghar N. [Western Michigan Univ., Kalamazoo MI (United States); Hess, Wayne P. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Thevuthasan, Suntharampillai [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

    2013-10-16

    In this study, we explore the possibility of using plasmonic Ag nanorod arrays featuring enhanced photoemission as high-brightness photocathode material. Silver nanorod arrays are synthesized by the DC electrodeposition method and their dimensionality, uniformity, crystallinity and oxide/impurity content are characterized. These Ag nanorod arrays exhibit greatly enhanced two-photon photoemission under 400 nm femtosecond pulsed laser excitation. Plasmonic field enhancement in the array produces photoemission hot spots that are mapped using photoemission electron microscopy (PEEM). The relative photoemission enhancement of nanorod array hot spots relative to that of a flat Ag thin film is found to range between 102 and 3 x 103.

  16. Science Letters: Demonstration of a new biosensing concept for immunodiagnostic applications based on change in surface conductance of antibodies after biomolecular interactions

    Institute of Scientific and Technical Information of China (English)

    VASHIST Sandeep Kumar; KAUR Inderpreet; BAJPAI Ram Prakash; BHARADWAJ Lalit Mohan; TEWARI Rupinder; RAITERI Roberto

    2006-01-01

    We report an important observation that the surface conductivity of antibody layer immobilized on polylysine-coated glass substrate decreases upon the formation of complex with their specific antigens. This change in conductivity has been observed for both monoclonal and polyclonal antibodies. The conductance of monoclonal mouse IgG immobilized on polylysine-coated glass substrate changed from 1.02×l0-8 Ω-1 to 1.41×l0-11 Ω-1 at 10 V when complex is formed due to the specific biomolecular interactions with rabbit anti-mouse IgG F(ab')2. Similar behavior was observed when the same set up was tested in two clinical assays: (1) anti-Leishmania antigen polyclonal antibodies taken from Kala Azar positive patient serum interacting with Leishmania promastigote antigen, and (2) anti-p21 polyclonal antibodies interacting with p21 antigen. The proposed concept can represent a new immunodiagnostic technique and may have wide ranging applications in biosensors and nanobiotechnology too.

  17. The research progress of tiling array technology and applications

    Institute of Scientific and Technical Information of China (English)

    LANG XianYu; WANG Jun; CHI XueBin

    2008-01-01

    Tiling array technology was improved from microarray technology. Over the past five years, tiling array has become an important tool for gathering genome information. Its features of high density and high throughput allow people to probe into life from the whole-genome level. This paper is a survey of tiling array technology and its applications. In addition, some typical algorithms for identifying expressed probe signals are described and compared.

  18. Application of Array Measurement in Blind Identification

    Institute of Scientific and Technical Information of China (English)

    王勇; 孙连明; 刘文江

    2003-01-01

    This paper deals with blind identification and deconvolution algorithm for an arbitrary, possibly white or colored, stationary or nonstationary signal, which is observed through array sensors. By using multiple sensors with their individual outputs sampled at a rate 1/T, one can obtain cyclostationary signals. They can be considered as a single-input multiple-output model with an identical but unknown input signal. With the array measurement, an algorithm for estimating the system transfer function model and its parameters is presented.

  19. Programming in biomolecular computation

    DEFF Research Database (Denmark)

    Hartmann, Lars Røeboe; Jones, Neil; Simonsen, Jakob Grue

    2010-01-01

    executable, but are also compilable and interpretable. It is universal: all computable functions can be computed (in natural ways and without arcane encodings of data and algorithm); it is also uniform: new “hardware” is not needed to solve new problems; and (last but not least) it is Turing complete......Our goal is to provide a top-down approach to biomolecular computation. In spite of widespread discussion about connections between biology and computation, one question seems notable by its absence: Where are the programs? We introduce a model of computation that is evidently programmable......, by programs reminiscent of low-level computer machine code; and at the same time biologically plausible: its functioning is defined by a single and relatively small set of chemical-like reaction rules. Further properties: the model is stored-program: programs are the same as data, so programs are not only...

  20. Programming in Biomolecular Computation

    DEFF Research Database (Denmark)

    Hartmann, Lars; Jones, Neil; Simonsen, Jakob Grue

    2010-01-01

    Our goal is to provide a top-down approach to biomolecular computation. In spite of widespread discussion about connections between biology and computation, one question seems notable by its absence: Where are the programs? We introduce a model of computation that is evidently programmable......, by programs reminiscent of low-level computer machine code; and at the same time biologically plausible: its functioning is defined by a single and relatively small set of chemical-like reaction rules. Further properties: the model is stored-program: programs are the same as data, so programs are not only...... in a strong sense: a universal algorithm exists, that is able to execute any program, and is not asymptotically inefficient. A prototype model has been implemented (for now in silico on a conventional computer). This work opens new perspectives on just how computation may be specified at the biological level....

  1. Ordered Au Nanodisk and Nanohole Arrays: Fabrication and Applications

    KAUST Repository

    Zheng, Yue Bing

    2010-01-01

    We have utilized nanosphere lithography (NSL) to fabricate ordered Au nanodisk and nanohole arrays on substrates and have studied the localized surface plasmon resonance (LSPR) of the arrays. Through these investigations, we demonstrate that the angle- dependent behavior of the LSPR in the Au nanodisk arrays enables real-time observation of exciton-plasmon couplings. In addition, we show that the NSL-fabricated Au nanohole arrays can be applied as templates for patterning micro-/nanoparticles under capillary force. The unique structural and plasmonic characteristics of the Au nanodisk and nano- hole arrays, as well as the low-cost and high-throughput NSL-based nanofabrication technique, render these arrays excellent platforms for numerous engineering applications. © 2010 by ASME.

  2. Graphene array antenna for 5G applications

    Science.gov (United States)

    Sa'don, Siti Nor Hafizah; Kamarudin, Muhammad Ramlee; Ahmad, Fauzan; Jusoh, Muzammil; Majid, Huda A.

    2017-02-01

    Fifth generation (5G) needs to provide better coverage than the previous generation. However, high frequency and millimeter wave experience penetration loss, propagation loss and even more loss in energy for long distance. Hence, a graphene array antenna is proposed for high gain to cover a long distance communications since array antenna enables in providing more directive beams. The investigation is conducted on three types of substrates with gain achieved is more than 7 dBi. The gain obtained is good since it is comparable with other studies. In addition, these antennas consume small numbers of elements to achieve high gain.

  3. Interleaved Array Antennas for FMCW Radar Applications

    NARCIS (Netherlands)

    Lager, I.E.; Trampuz, C.; Simeoni, M.; Ligthart, L.P.

    2009-01-01

    An effective and robust strategy for concurrently designing the transmit and receive antennas of a frequency-modulated, continuos-wave radar is discussed. The aperture architecture is based on the use of non-periodic, interleaved sub-arrays. Deterministic element placement is employed for ensuring d

  4. Phased annular array transducers for ultrasonic guided wave applications

    Science.gov (United States)

    Yan, Fei; Borigo, Cody; Liang, Yue; Koduru, Jaya P.; Rose, Joseph L.

    2011-04-01

    Mode and frequency control always plays an important role in ultrasonic guided wave applications. In this paper, theoretical understanding of guided wave excitations of axisymmetric sources on plate structures is established. It is shown that a wave number spectrum can be used to investigate the guided wave excitations of an axisymmetric source. The wave number spectrum is calculated from a Hankel transform of the axial source loading profile. On the basis of the theoretical understanding, phased annular array transducers are developed as a powerful tool for guided wave mode and frequency control. By applying appropriate time delays to phase the multiple elements of an annular array transducer, guided wave mode and frequency tuning can be achieved fully electronically. The phased annular array transducers have been successfully used for various applications. Example applications presented in this paper include phased annular arrays for guided wave beamforming and a novel ultrasonic vibration modal analysis technique for damage detection.

  5. Simulation Application for Optimization of Solar Collector Array

    OpenAIRE

    Igor Shesho*,; Done Tashevsk

    2014-01-01

    Solar systems offer a comparatively low output density , so increasing the output always means a corresponding increase in the size of the collector area. Thus collector arrays are occasionally constructed (i.e. with different azimuth angles and/or slopes, which be imposed by the location and structure available to mount the collector. In this paper is developed simulation application for optimization for the solar collector array position and number of collectors in regard of...

  6. Applications of dynamic nuclear polarization to the study of reactions and reagents in organic and biomolecular chemistry.

    Science.gov (United States)

    Hilty, Christian; Bowen, Sean

    2010-08-07

    Nuclear Magnetic Resonance (NMR) is an important spectroscopic tool for the identification and structural characterization of molecules in chemistry and biochemistry. The most significant limitation of NMR compared to other spectroscopies is its relatively low sensitivity, which thus often requires long measurement times or large amounts of sample. A way of increasing sensitivity of single scan NMR spectra by several orders of magnitude is through hyperpolarization of nuclear spins. Dynamic nuclear polarization allows hyperpolarization of most spins in small molecules encountered in chemistry and biochemistry. NMR spectra of small amounts of samples from natural source, or from chemical synthesis can readily be acquired. Perhaps more interestingly, the availability of the entire hyperpolarized NMR signal in one single scan allows the measurement of transient processes in real time, if applied together with a stopped-flow technique. Through observation of chemical shift, different reactant and product species can be distinguished, and kinetics and mechanisms, for example in enzyme catalyzed reactions, can be elucidated. Real-time hyperpolarization-enhanced NMR is uniquely amenable to correlating atomic positions not only through space, but also over time between reactant and product species. Such correlations carry mechanistic information about a reaction, and can prove reaction pathways. Applications of this technique are emerging in different areas of chemistry concerned with rapid reactions, including not only enzymatic processes, but also chemical catalysis and protein folding.

  7. Microwave array applicator for radiometry-controlled superficial hyperthermia

    Science.gov (United States)

    Stauffer, Paul R.; Jacobsen, Svein; Neuman, Daniel

    2001-06-01

    Hyperthermia therapy has been shown clinically effective for a variety of skin diseases but current heating equipment is inadequate for most patients. This effort describes the design and performance of a flexible microstrip array applicator intended for heating large regions of tissue over contoured anatomy while at the same time monitoring temperature of the underlying tissue by non-invasive radiometric sensing of blackbody radiation from the heated volume. For this dual purpose applicator, an array of broadband Archimedean spiral receive antennas is integrated into an array of Dual Concentric Conductor heating apertures. Applicator heating uniformity is assessed with electric field scans in homogenous muscle phantoms and with measured temperature distributions in clinical treatments of chestwall recurrence of breast carcinoma. The data demonstrate precisely controlled heating out to the perimeter of large (40 x 13 cm2) multiaperture conformal array applicators. Capabilities of the radiometry system are assessed by correlation of brightness temperatures measured in phantom loads of known temperature distribution as seen through an intervening 5 mm thick water bolus at constant 40°C. The radiometer demonstrates excellent sensitivity and an accuracy of +0.1-0.45°C for temperature measurements up to 5 cm deep in phantom when using a one dimensional weighting function analysis and up to 6 independent 500 MHz bandwidths within the 1-4 GHz range. The data clearly indicate that both heating and radiometric thermometry are possible using the same thin and flexible printed circuit board microstrip array applicator. Once development is complete, this dual mode conformal array applicator with multiplexed radiometric display system should provide significantly improved uniformity and ease of heating large area superficial tissue disease.

  8. Nano-arrays of SAM by dip-pen nanowriting (DPN) technique for futuristic bio-electronic and bio-sensor applications

    Energy Technology Data Exchange (ETDEWEB)

    Agarwal, Pankaj B., E-mail: pankaj@ceeri.ernet.i [Central Electronics Engineering Research Institute, Pilani - 333 031, (Council of Scientific and Industrial Research, Delhi) (India); Kumar, A. [Central Electronics Engineering Research Institute, Pilani - 333 031, (Council of Scientific and Industrial Research, Delhi) (India); Saravanan, R. [Vellore Institute of Technology University, Vellore - 632 014 (India); Sharma, A.K.; Shekhar, Chandra [Central Electronics Engineering Research Institute, Pilani - 333 031, (Council of Scientific and Industrial Research, Delhi) (India)

    2010-11-30

    Nano-arrays of bio-molecules have potential applications in many areas namely, bio-sensors, bio/molecular electronics and virus detection. Spot array, micro-contact printing and photolithography are used for micron size array fabrications while Dip-Pen Nanowriting (DPN) is employed for submicron/nano size arrays. We have fabricated nano-dots of 16-MHA (16-mercaptohexadecanoic acid) self-assembled monolayer (SAM) on gold substrate by DPN technique with different dwell time under varying relative humidity. These patterns were imaged in the same system in LFM (Lateral Force Microscopy) mode with fast scanning speed (5 Hz). The effect of humidity on size variation of nano-dots has been studied. During experiments, relative humidity (RH) was varied from 20% to 60%, while the temperature was kept constant {approx} 25 {sup o}C. The minimum measured diameter of the dot is {approx} 294 nm at RH = 20% for a dwell time of 2 s. The thickness of the 16-MHA dots, estimated in NanoRule image analysis software is {approx} 2 nm, which agrees well with the length of single MHA molecule (2.2 nm). The line profile has been used to estimate the size and thickness of dots. The obtained results will be useful in further development of nano-array based bio-sensors and bio-electronic devices.

  9. Riordan arrays and applications via the classical umbral calculus

    CERN Document Server

    Agapito, José; Petrullo, Pasquale; Torres, Maria M

    2011-01-01

    We use the classical umbral calculus to describe Riordan arrays. Here, a Riordan array is generated by a pair of umbrae, and this provides efficient proofs of several basic results of the theory such as the multiplication rule, the recursive properties, the fundamental theorem and the connection with Sheffer sequences. In particular, we show that the fundamental theorem turns out to be a reformulation of the umbral Abel identity. As an application, we give an elementary approach to the problem of extending integer powers of Riordan arrays to complex powers in such a way that additivity of the exponents is preserved. Also, ordinary Riordan arrays are studied within the classical umbral perspective and some combinatorial identities are discussed regarding Catalan numbers, Fibonacci numbers and Chebyshev polynomials.

  10. Micro and Nanotechnologies Enhanced Biomolecular Sensing

    Directory of Open Access Journals (Sweden)

    Tza-Huei Wang

    2013-07-01

    Full Text Available This editorial summarizes some of the recent advances of micro and nanotechnology-based tools and devices for biomolecular detection. These include the incorporation of nanomaterials into a sensor surface or directly interfacing with molecular probes to enhance target detection via more rapid and sensitive responses, and the use of self-assembled organic/inorganic nanocomposites that inhibit exceptional spectroscopic properties to enable facile homogenous assays with efficient binding kinetics. Discussions also include some insight into microfluidic principles behind the development of an integrated sample preparation and biosensor platform toward a miniaturized and fully functional system for point of care applications.

  11. Simulation and Data Processing for Ultrasonic Phased-Arrays Applications

    Science.gov (United States)

    Chaffaï-Gargouri, S.; Chatillon, S.; Mahaut, S.; Le Ber, L.

    2007-03-01

    The use of phased-arrays techniques has considerably contributed to extend the domain of applications and the performances of ultrasonic methods on complex configurations. Their adaptability offers a great freedom for conceiving the inspection leading to a wide range of functionalities gathering electronic commutation, applications of different delay laws and so on. This advantage allows to circumvent the difficulties encountered with more classical techniques especially when the inspection is assisted by simulation at the different stages : probe design (optimization of the number and characteristics of the elements), evaluation of the performances in terms of flaw detection (zone coverage) and characterization, driving the array (computation of adapted delay laws) and finally analyzing the results (versatile model-based imaging tools allowing in particular to locate the data in the real space). The CEA is strongly involved in the development of efficient simulation-based tools adapted to these needs. In this communication we present the recent advances done at CEA in this field and show several examples of complex NDT phased arrays applications. On these cases we show the interest and the performances of simulation-helped array design, array-driving and data analysis.

  12. Highly Integrated Application Specific MMICS for Active Phased Array Radar Applications

    NARCIS (Netherlands)

    Bogaart, F.L.M. van den

    2000-01-01

    Application specific MMIC solutions for active array radar, developed at TNO-FEL. are presented. The use and application of these MMICs in their respective radar systems will be shown. These MMICs address the needs for current and future phased-array topologies as for example the concept of "smart s

  13. Highly integrated application specific MMICs for active phased array radar applications

    NARCIS (Netherlands)

    Bogaart, F.L.M. van den

    1999-01-01

    Application specific MMIC solutions for active array radar, developed at TNO-FEL, are presented. The use and application of these MMICs in their respective radar systems will be shown. These MMICs address the needs for current and future phased-array topologies as for example the concept of "smart s

  14. Optimized shapes of magnetic arrays for drug targeting applications

    Science.gov (United States)

    Barnsley, Lester C.; Carugo, Dario; Stride, Eleanor

    2016-06-01

    Arrays of permanent magnet elements have been utilized as light-weight, inexpensive sources for applying external magnetic fields in magnetic drug targeting applications, but they are extremely limited in the range of depths over which they can apply useful magnetic forces. In this paper, designs for optimized magnet arrays are presented, which were generated using an optimization routine to maximize the magnetic force available from an arbitrary arrangement of magnetized elements, depending on a set of design parameters including the depth of targeting (up to 50 mm from the magnet) and direction of force required. A method for assembling arrays in practice is considered, quantifying the difficulty of assembly and suggesting a means for easing this difficulty without a significant compromise to the applied field or force. Finite element simulations of in vitro magnetic retention experiments were run to demonstrate the capability of a subset of arrays to retain magnetic microparticles against flow. The results suggest that, depending on the choice of array, a useful proportion of particles (more than 10% ) could be retained at flow velocities up to 100 mm s-1 or to depths as far as 50 mm from the magnet. Finally, the optimization routine was used to generate a design for a Halbach array optimized to deliver magnetic force to a depth of 50 mm inside the brain.

  15. A mechanical Turing machine: blueprint for a biomolecular computer.

    Science.gov (United States)

    Shapiro, Ehud

    2012-08-06

    We describe a working mechanical device that embodies the theoretical computing machine of Alan Turing, and as such is a universal programmable computer. The device operates on three-dimensional building blocks by applying mechanical analogues of polymer elongation, cleavage and ligation, movement along a polymer, and control by molecular recognition unleashing allosteric conformational changes. Logically, the device is not more complicated than biomolecular machines of the living cell, and all its operations are part of the standard repertoire of these machines; hence, a biomolecular embodiment of the device is not infeasible. If implemented, such a biomolecular device may operate in vivo, interacting with its biochemical environment in a program-controlled manner. In particular, it may 'compute' synthetic biopolymers and release them into its environment in response to input from the environment, a capability that may have broad pharmaceutical and biological applications.

  16. Area Array Technology Evaluations for Space and Military Applications

    Science.gov (United States)

    Ghaffarian, Reza

    1996-01-01

    The Jet Propulsion Laboratory (JPL) is currently assessing the use of Area Array Packaging (AAP) for National Aeronautics and Space Administration (NASA) spaceflight applications. this work is being funded through NASA Headquarters, Code Q. The paper discusses background of AAP, objectives, and uses of AAP.

  17. Parallel scanning probe arrays: their applications

    Directory of Open Access Journals (Sweden)

    Chang Liu

    2008-01-01

    Full Text Available Since the invention of the scanning tunneling microscope (STM1 and the atomic force microscope (AFM2, the field of scanning probe microscopy (SPM instruments has grown steadily and has had a profound influence in materials research, chemistry, biology, nanotechnology, and electronics3,4. Today, scanning probe instruments are used for metrology, characterization5, detection6, manipulation7, patterning8,9, and material modification. A wide range of scanning probe applications are available, taking advantage of various modes of tip–substrate interactions, including force, optics10,11, electrochemistry12, electromagnetics, electrostatics, thermal and mass transfer13,14, and vibration15,16.

  18. Low Power Systolic Array Based Digital Filter for DSP Applications

    Directory of Open Access Journals (Sweden)

    S. Karthick

    2015-01-01

    Full Text Available Main concepts in DSP include filtering, averaging, modulating, and correlating the signals in digital form to estimate characteristic parameter of a signal into a desirable form. This paper presents a brief concept of low power datapath impact for Digital Signal Processing (DSP based biomedical application. Systolic array based digital filter used in signal processing of electrocardiogram analysis is presented with datapath architectural innovations in low power consumption perspective. Implementation was done with ASIC design methodology using TSMC 65 nm technological library node. The proposed systolic array filter has reduced leakage power up to 8.5% than the existing filter architectures.

  19. Low Power Systolic Array Based Digital Filter for DSP Applications.

    Science.gov (United States)

    Karthick, S; Valarmathy, S; Prabhu, E

    2015-01-01

    Main concepts in DSP include filtering, averaging, modulating, and correlating the signals in digital form to estimate characteristic parameter of a signal into a desirable form. This paper presents a brief concept of low power datapath impact for Digital Signal Processing (DSP) based biomedical application. Systolic array based digital filter used in signal processing of electrocardiogram analysis is presented with datapath architectural innovations in low power consumption perspective. Implementation was done with ASIC design methodology using TSMC 65 nm technological library node. The proposed systolic array filter has reduced leakage power up to 8.5% than the existing filter architectures.

  20. Smartphones for cell and biomolecular detection.

    Science.gov (United States)

    Liu, Xiyuan; Lin, Tung-Yi; Lillehoj, Peter B

    2014-11-01

    Recent advances in biomedical science and technology have played a significant role in the development of new sensors and assays for cell and biomolecular detection. Generally, these efforts are aimed at reducing the complexity and costs associated with diagnostic testing so that it can be performed outside of a laboratory or hospital setting, requiring minimal equipment and user involvement. In particular, point-of-care (POC) testing offers immense potential for many important applications including medical diagnosis, environmental monitoring, food safety, and biosecurity. When coupled with smartphones, POC systems can offer portability, ease of use and enhanced functionality while maintaining performance. This review article focuses on recent advancements and developments in smartphone-based POC systems within the last 6 years with an emphasis on cell and biomolecular detection. These devices typically comprise multiple components, such as detectors, sample processors, disposable chips, batteries, and software, which are integrated with a commercial smartphone. One of the most important aspects of developing these systems is the integration of these components onto a compact and lightweight platform that requires minimal power. Researchers have demonstrated several promising approaches employing various detection schemes and device configurations, and it is expected that further developments in biosensors, battery technology and miniaturized electronics will enable smartphone-based POC technologies to become more mainstream tools in the scientific and biomedical communities.

  1. Applications of microlens-conditioned laser diode arrays

    Energy Technology Data Exchange (ETDEWEB)

    Beach, R.J.; Emanuel, M.A.; Freitas, B.L. [and others

    1995-01-01

    The ability to condition the radiance of laser diodes using shaped-fiber cylindrical-microlens technology has dramatically increased the number of applications that can be practically engaged by diode laser arrays. Lawrence Livermore National Laboratory (LLNL) has actively pursued optical efficiency and engineering improvements in this technology in an effort to supply large radiance-conditioned laser diode array sources for its own internal programs. This effort has centered on the development of a modular integrated laser diode packaging technology with the goal of enabling the simple and flexible construction of high average power, high density, two-dimensional arrays with integrated cylindrical microlenses. Within LLNL, the principal applications of microlens-conditioned laser diode arrays are as high intensity pump sources for diode pumped solid state lasers (DPSSLs). A simple end-pumping architecture has been developed and demonstrated that allows the radiation from microlens-conditioned, two-dimensional diode array apertures to be efficiently delivered to the end of rod lasers. To date, pump powers as high as 2.5 kW have been delivered to 3 mm diameter laser rods. Such high power levels are critical for pumping solid state lasers in which the terminal laser level is a Stark level lying in the ground state manifold. Previously, such systems have often required operation of the solid state gain medium at low temperature to freeze out the terminal laser Stark level population. The authors recently developed high intensity pump sources overcome this difficulty by effectively pumping to much higher inversion levels, allowing efficient operation at or near room temperature. Because the end-pumping technology is scalable in absolute power, the number of rare-earth ions and transitions that can be effectively accessed for use in practical DPSSL systems has grown tremendously.

  2. Design of nested Halbach cylinder arrays for magnetic refrigeration applications

    Energy Technology Data Exchange (ETDEWEB)

    Trevizoli, Paulo V., E-mail: trevizoli@polo.ufsc.br; Lozano, Jaime A.; Peixer, Guilherme F.; Barbosa Jr, Jader R.

    2015-12-01

    We present an experimentally validated analytical procedure to design nested Halbach cylinder arrays for magnetic cooling applications. The procedure aims at maximizing the magnetic flux density variation in the core of the array for a given set of design parameters, namely the inner diameter of the internal magnet, the air gap between the magnet cylinders, the number of segments of each magnet and the remanent flux density of the Nd{sub 2}Fe{sub 14}B magnet grade. The design procedure was assisted and verified by 3-D numerical modeling using a commercial software package. An important aspect of the optimal design is to maintain an uniform axial distribution of the magnetic flux density in the region of the inner gap occupied by the active magnetocaloric regenerator. An optimal nested Halbach cylinder array was manufactured and experimentally evaluated for the magnetic flux density in the inner gap. The analytically calculated magnetic flux density variation agreed to within 5.6% with the experimental value for the center point of the magnet gap. - Highlights: • An analytical procedure to design nested Halbach cylinder arrays is proposed. • An optimal magnet configuration was built based on the analytical procedure. • The procedure was validated with 3D COMSOL simulations and experimental data.

  3. Analysis of Camera Arrays Applicable to the Internet of Things.

    Science.gov (United States)

    Yang, Jiachen; Xu, Ru; Lv, Zhihan; Song, Houbing

    2016-03-22

    The Internet of Things is built based on various sensors and networks. Sensors for stereo capture are essential for acquiring information and have been applied in different fields. In this paper, we focus on the camera modeling and analysis, which is very important for stereo display and helps with viewing. We model two kinds of cameras, a parallel and a converged one, and analyze the difference between them in vertical and horizontal parallax. Even though different kinds of camera arrays are used in various applications and analyzed in the research work, there are few discussions on the comparison of them. Therefore, we make a detailed analysis about their performance over different shooting distances. From our analysis, we find that the threshold of shooting distance for converged cameras is 7 m. In addition, we design a camera array in our work that can be used as a parallel camera array, as well as a converged camera array and take some images and videos with it to identify the threshold.

  4. Microfabricated Chemical Gas Sensors and Sensor Arrays for Aerospace Applications

    Science.gov (United States)

    Hunter, Gary W.

    2005-01-01

    Aerospace applications require the development of chemical sensors with capabilities beyond those of commercially available sensors. In particular, factors such as minimal sensor size, weight, and power consumption are particularly important. Development areas which have potential aerospace applications include launch vehicle leak detection, engine health monitoring, and fire detection. Sensor development for these applications is based on progress in three types of technology: 1) Micromachining and microfabrication (Microsystem) technology to fabricate miniaturized sensors; 2) The use of nanocrystalline materials to develop sensors with improved stability combined with higher sensitivity; 3) The development of high temperature semiconductors, especially silicon carbide. This presentation discusses the needs of space applications as well as the point-contact sensor technology and sensor arrays being developed to address these needs. Sensors to measure hydrogen, hydrocarbons, nitrogen oxides (NO,), carbon monoxide, oxygen, and carbon dioxide are being developed as well as arrays for leak, fire, and emissions detection. Demonstrations of the technology will also be discussed. It is concluded that microfabricated sensor technology has significant potential for use in a range of aerospace applications.

  5. Dual-Polarized Planar Phased Array Analysis for Meteorological Applications

    Directory of Open Access Journals (Sweden)

    Chen Pang

    2015-01-01

    Full Text Available This paper presents a theoretical analysis for the accuracy requirements of the planar polarimetric phased array radar (PPPAR in meteorological applications. Among many factors that contribute to the polarimetric biases, four factors are considered and analyzed in this study, namely, the polarization distortion due to the intrinsic limitation of a dual-polarized antenna element, the antenna pattern measurement error, the entire array patterns, and the imperfect horizontal and vertical channels. Two operation modes, the alternately transmitting and simultaneously receiving (ATSR mode and the simultaneously transmitting and simultaneously receiving (STSR mode, are discussed. For each mode, the polarimetric biases are formulated. As the STSR mode with orthogonal waveforms is similar to the ATSR mode, the analysis is mainly focused on the ATSR mode and the impacts of the bias sources on the measurement of polarimetric variables are investigated through Monte Carlo simulations. Some insights of the accuracy requirements are obtained and summarized.

  6. Biomolecular computing systems: principles, progress and potential.

    Science.gov (United States)

    Benenson, Yaakov

    2012-06-12

    The task of information processing, or computation, can be performed by natural and man-made 'devices'. Man-made computers are made from silicon chips, whereas natural 'computers', such as the brain, use cells and molecules. Computation also occurs on a much smaller scale in regulatory and signalling pathways in individual cells and even within single biomolecules. Indeed, much of what we recognize as life results from the remarkable capacity of biological building blocks to compute in highly sophisticated ways. Rational design and engineering of biological computing systems can greatly enhance our ability to study and to control biological systems. Potential applications include tissue engineering and regeneration and medical treatments. This Review introduces key concepts and discusses recent progress that has been made in biomolecular computing.

  7. Biomolecular rods and tubes in nanotechnology

    Science.gov (United States)

    Bittner, Alexander M.

    2005-02-01

    Biomolecules are vitally important elements in nanoscale science and also in future nanotechnology. Their shape and their chemical and physical functionality can give them a big advantage over inorganic and organic substances. While this becomes most obvious in proteins and peptides, with their complicated, but easily controlled chemistry, other biomolecular substances such as DNA, lipids and carbohydrates can also be important. In this review, the emphasis is on one-dimensional molecules and on molecules that self-assemble into linear structures, and on their potential applications. An important aspect is that biomolecules can act as templates, i.e. their shape and chemical properties can be employed to arrange inorganic substances such as metals or metal compounds on the nanometre scale. In particular, rod- and tube-like nanostructures can show physical properties that are different from those of the bulk material, and thus these structures are likely to be a basis for new technology.

  8. Biomolecular recognition and detection using gold-based nanoprobes

    Science.gov (United States)

    Crew, Elizabeth

    The ability to control the biomolecular interactions is important for developing bioanalytical probes used in biomolecule and biomarker detections. This work aims at a fundamental understanding of the interactions and reactivities involving DNA, miRNA, and amino acids using gold-based nanoparticles as nanoprobes, which has implications for developing new strategies for the early detection of diseases, such as cancer, and controlled delivery of drugs. Surface modifications of the nanoprobes with DNA, miRNA, and amino acids and the nanoprobe directed biomolecular reactivities, such as complementary-strand binding, enzymatic cutting and amino acid interactions, have been investigated. Among various analytical techniques employed for the analysis of the biomolecule-nanoprobe interactions, surface enhanced Raman scattering spectroscopy (SERS) has been demonstrated to provide a powerful tool for real time monitoring of the DNA assembly and enzymatic cutting processes in solutions. This demonstration harnesses the "hot-spot" characteristic tuned by the interparticle biomolecular-regulated interactions and distances. The assembly of gold nanoparticles has also been exploited as sensing thin films on chemiresistor arrays for the detection of volatile organic compounds, including biomarker molecules associated with diabetes. Important findings of the nanoprobes in delivering miRNA to cells, detecting DNA hybridization kinetics, discerning chiral recognition with enantiomeric cysteines, and sensing biomarker molecules with the nanostructured thin films will be discussed, along with their implications to enhancing sensitivity, selectivity and limits of detection.

  9. Application of cooled IR focal plane arrays in thermographic cameras

    Science.gov (United States)

    Vollheim, B.; Gaertner, M.; Dammass, G.; Krausz, M.

    2016-05-01

    The usage of cooled IR Focal Plane Array detectors in thermographic or radiometric thermal imaging cameras, respectively, leads to special demands on these detectors, which are discussed in this paper. For a radiometric calibration of wide temperature measuring ranges from -40 up to 2,000 °C, a linear and time-stable response of the photodiode array has to be ensured for low as well as high radiation intensities. The maximum detectable photon flux is limited by the allowed shift of the photodiode's bias that should remain in the linear part of the photodiode's I(V) curve even for the highest photocurrent. This limits the measurable highest object temperature in practice earlier than the minimum possible integration time. Higher temperature measuring ranges are realized by means of neutral or spectral filters. Defense and Security applications normally provide images at the given ambient temperature with small hot spots. The usage of radiometric thermal imagers for thermography often feature larger objects with a high temperature contrast to the background. This should not generate artifacts in the image, like pixel patterns or stripes. Further issues concern the clock regime or the sub-frame capabilities of the Read-Out-Circuit and the frame rate dependency of the signal. We will briefly describe the demands on the lens design for thermal imaging cameras when using cooled IR Focal Plane Array detectors with large apertures.

  10. Simulation Application for Optimization of Solar Collector Array

    Directory of Open Access Journals (Sweden)

    Igor Shesho*,

    2014-01-01

    Full Text Available Solar systems offer a comparatively low output density , so increasing the output always means a corresponding increase in the size of the collector area. Thus collector arrays are occasionally constructed (i.e. with different azimuth angles and/or slopes, which be imposed by the location and structure available to mount the collector. In this paper is developed simulation application for optimization for the solar collector array position and number of collectors in regard of maximum annual energy gain and thermal efficiency. It is analyzed solar collector array which has parallel and serial connected solar collectors with different tilt, orientation and thermal characteristics. Measurements are performed for determine the thermal performance of the system. Using the programming language INSEL it is developed simulation program for the analyzed system where optimization is done through parametric runs in the simulation program. Accent is given on the SE orientated collectors regarding their tilt and number, comparing two solutions-scenarios and the current system set situation of the in means of efficiency and total annual energy gain. The first scenario envisages a change of angle from 35 to 25 solar panels on the SE orientation, while the second scenario envisages retaining the existing angle of 35 and adding additional solar collector. Scenario 1 accounts for more than 13% energy gain on annual basis while Scenario 2 has 2% bigger thermal efficiency.

  11. Global Langevin model of multidimensional biomolecular dynamics

    Science.gov (United States)

    Schaudinnus, Norbert; Lickert, Benjamin; Biswas, Mithun; Stock, Gerhard

    2016-11-01

    Molecular dynamics simulations of biomolecular processes are often discussed in terms of diffusive motion on a low-dimensional free energy landscape F ( 𝒙 ) . To provide a theoretical basis for this interpretation, one may invoke the system-bath ansatz á la Zwanzig. That is, by assuming a time scale separation between the slow motion along the system coordinate x and the fast fluctuations of the bath, a memory-free Langevin equation can be derived that describes the system's motion on the free energy landscape F ( 𝒙 ) , which is damped by a friction field and driven by a stochastic force that is related to the friction via the fluctuation-dissipation theorem. While the theoretical formulation of Zwanzig typically assumes a highly idealized form of the bath Hamiltonian and the system-bath coupling, one would like to extend the approach to realistic data-based biomolecular systems. Here a practical method is proposed to construct an analytically defined global model of structural dynamics. Given a molecular dynamics simulation and adequate collective coordinates, the approach employs an "empirical valence bond"-type model which is suitable to represent multidimensional free energy landscapes as well as an approximate description of the friction field. Adopting alanine dipeptide and a three-dimensional model of heptaalanine as simple examples, the resulting Langevin model is shown to reproduce the results of the underlying all-atom simulations. Because the Langevin equation can also be shown to satisfy the underlying assumptions of the theory (such as a delta-correlated Gaussian-distributed noise), the global model provides a correct, albeit empirical, realization of Zwanzig's formulation. As an application, the model can be used to investigate the dependence of the system on parameter changes and to predict the effect of site-selective mutations on the dynamics.

  12. Co-Immobilization of Proteins and DNA Origami Nanoplates to Produce High-Contrast Biomolecular Nanoarrays.

    Science.gov (United States)

    Hager, Roland; Burns, Jonathan R; Grydlik, Martyna J; Halilovic, Alma; Haselgrübler, Thomas; Schäffler, Friedrich; Howorka, Stefan

    2016-06-01

    The biofunctionalization of nanopatterned surfaces with DNA origami nanostructures is an important topic in nanobiotechnology. An unexplored challenge is, however, to co-immobilize proteins with DNA origami at pre-determined substrate sites in high contrast relative to the nontarget areas. The immobilization should, in addition, preferably be achieved on a transparent substrate to allow ultrasensitive optical detection. If successful, specific co-binding would be a step towards stoichiometrically defined arrays with few to individual protein molecules per site. Here, we successfully immobilize with high specificity positively charged avidin proteins and negatively charged DNA origami nanoplates on 100 nm-wide carbon nanoislands while suppressing undesired adsorption to surrounding nontarget areas. The arrays on glass slides achieve unprecedented selectivity factors of up to 4000 and allow ultrasensitive fluorescence read-out. The co-immobilization onto the nanoislands leads to layered biomolecular architectures, which are functional because bound DNA origami influences the number of capturing sites on the nanopatches for other proteins. The novel hybrid DNA origami-protein nanoarrays allow the fabrication of versatile research platforms for applications in biosensing, biophysics, and cell biology, and, in addition, represent an important step towards single-molecule protein arrays.

  13. Low Average Sidelobe Slot Array Antennas for Radiometer Applications

    Science.gov (United States)

    Rengarajan, Sembiam; Zawardzki, Mark S.; Hodges, Richard E.

    2012-01-01

    In radiometer applications, it is required to design antennas that meet low average sidelobe levels and low average return loss over a specified frequency bandwidth. It is a challenge to meet such specifications over a frequency range when one uses resonant elements such as waveguide feed slots. In addition to their inherent narrow frequency band performance, the problem is exacerbated due to modeling errors and manufacturing tolerances. There was a need to develop a design methodology to solve the problem. An iterative design procedure was developed by starting with an array architecture, lattice spacing, aperture distribution, waveguide dimensions, etc. The array was designed using Elliott s technique with appropriate values of the total slot conductance in each radiating waveguide, and the total resistance in each feed waveguide. Subsequently, the array performance was analyzed by the full wave method of moments solution to the pertinent integral equations. Monte Carlo simulations were also carried out to account for amplitude and phase errors introduced for the aperture distribution due to modeling errors as well as manufacturing tolerances. If the design margins for the average sidelobe level and the average return loss were not adequate, array architecture, lattice spacing, aperture distribution, and waveguide dimensions were varied in subsequent iterations. Once the design margins were found to be adequate, the iteration was stopped and a good design was achieved. A symmetric array architecture was found to meet the design specification with adequate margin. The specifications were near 40 dB for angular regions beyond 30 degrees from broadside. Separable Taylor distribution with nbar=4 and 35 dB sidelobe specification was chosen for each principal plane. A non-separable distribution obtained by the genetic algorithm was found to have similar characteristics. The element spacing was obtained to provide the required beamwidth and close to a null in the E

  14. Applications of the theory of Gr?bner bases to the study of linear recurring arrays

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    This is a small survey of applications of the theory of Gr?bner bases to the study of linear recurring arrays. It applies some properties of Gr?bner bases to studying linear recurring arrays and contains recent new results on linear recurring arrays.

  15. Integrative NMR for biomolecular research.

    Science.gov (United States)

    Lee, Woonghee; Cornilescu, Gabriel; Dashti, Hesam; Eghbalnia, Hamid R; Tonelli, Marco; Westler, William M; Butcher, Samuel E; Henzler-Wildman, Katherine A; Markley, John L

    2016-04-01

    NMR spectroscopy is a powerful technique for determining structural and functional features of biomolecules in physiological solution as well as for observing their intermolecular interactions in real-time. However, complex steps associated with its practice have made the approach daunting for non-specialists. We introduce an NMR platform that makes biomolecular NMR spectroscopy much more accessible by integrating tools, databases, web services, and video tutorials that can be launched by simple installation of NMRFAM software packages or using a cross-platform virtual machine that can be run on any standard laptop or desktop computer. The software package can be downloaded freely from the NMRFAM software download page ( http://pine.nmrfam.wisc.edu/download_packages.html ), and detailed instructions are available from the Integrative NMR Video Tutorial page ( http://pine.nmrfam.wisc.edu/integrative.html ).

  16. Acoustic Eaton lens array and its fluid application

    CERN Document Server

    Kim, Sang-Hoon; Das, Mukunda P

    2016-01-01

    A principle of an acoustic Eaton Lens array and its application as a removable tsunami wall is proposed theoretically. The lenses are made of expandable rubber balloons and create a stop-band by the rotating the incoming tsunami wave and reduce the pressure by canceling each other. The diameter of each lens is larger than the wavelength of the tsunami near the coast, that is, order of a kilometer. The impedance matching on the border of the lenses results in little reflection. Before a tsunami, the balloons are buried underground in shallow water near the coast in folded or rounded form. Upon sounding of the tsunami alarm, water and air are pumped into the balloons, which expand and erect the wall above the sea level within a few hours. After the tsunami, the water and air are released from the balloons, which are then buried underground for reuse. Electricity is used to power the entire process.

  17. Biconical Ring Antenna Array for Wide Band Applications

    Directory of Open Access Journals (Sweden)

    C.SUBBA RAO

    2012-02-01

    Full Text Available Circular or ring arrays are conformal to the cylindrical surfaces unlike the linear arrays and can be mounted on moving objects. Biconical antenna is simple in construction and exhibits broad band characteristics. This antenna presents broad band radiation characteristics. In this paper circular or ring array of biconical antenna is proposed and its characteristics are analyzed for frequency band of 0.1 to 1GHz range. Radiation characteristicsof the array with excitation phase change are presented. Simulated results of the radiation characteristics of the circular array are analyzed.

  18. [Advances in biomolecular machine: methane monooxygenases].

    Science.gov (United States)

    Lu, Jixue; Wang, Shizhen; Fang, Baishan

    2015-07-01

    Methane monooxygenases (MMO), regarded as "an amazing biomolecular machine", catalyze the oxidation of methane to methanol under aerobic conditions. MMO catalyze the oxidation of methane elaborately, which is a novel way to catalyze methane to methanol. Furthermore, MMO can inspire the biomolecular machine design. In this review, we introduced MMO including structure, gene and catalytic mechanism. The history and the taxonomy of MMO were also introduced.

  19. Solution influence on biomolecular equilibria - Nucleic acid base associations

    Science.gov (United States)

    Pohorille, A.; Pratt, L. R.; Burt, S. K.; Macelroy, R. D.

    1984-01-01

    Various attempts to construct an understanding of the influence of solution environment on biomolecular equilibria at the molecular level using computer simulation are discussed. First, the application of the formal statistical thermodynamic program for investigating biomolecular equilibria in solution is presented, addressing modeling and conceptual simplications such as perturbative methods, long-range interaction approximations, surface thermodynamics, and hydration shell. Then, Monte Carlo calculations on the associations of nucleic acid bases in both polar and nonpolar solvents such as water and carbon tetrachloride are carried out. The solvent contribution to the enthalpy of base association is positive (destabilizing) in both polar and nonpolar solvents while negative enthalpies for stacked complexes are obtained only when the solute-solute in vacuo energy is added to the total energy. The release upon association of solvent molecules from the first hydration layer around a solute to the bulk is accompanied by an increase in solute-solvent energy and decrease in solvent-solvent energy. The techniques presented are expectd to displace less molecular and more heuristic modeling of biomolecular equilibria in solution.

  20. Start Up Application Concerns with Field Programmable Gate Arrays (FPGAs)

    Science.gov (United States)

    Katz, Richard B.

    1999-01-01

    This note is being published to improve the visibility of this subject, as we continue to see problems surface in designs, as well as to add additional information to the previously published note for design engineers. The original application note focused on designing systems with no single point failures using Actel Field Programmable Gate Arrays (FPGAs) for critical applications. Included in that note were the basic principles of operation of the Actel FPGA and a discussion of potential single-point failures. The note also discussed the issue of startup transients for that class of device. It is unfortunate that we continue to see some design problems using these devices. This note will focus on the startup properties of certain electronic components, in general, and current Actel FPGAs, in particular. Devices that are "power-on friendly" are currently being developed by Actel, as a variant of the new SX series of FPGAs. In the ideal world, electronic components would behave much differently than they do in the real world, The chain, of course, starts with the power supply. Ideally, the voltage will immediately rise to a stable V(sub cc) level, of course, it does not. Aside from practical design considerations, inrush current limits of certain capacitors must be observed and the power supply's output may be intentionally slew rate limited to prevent a large current spike on the system power bus. In any event, power supply rise time may range from less than I msec to 100 msec or more.

  1. Application of conformal map theory for design of 2-D ultrasonic array structure for NDT imaging application: a feasibility study.

    Science.gov (United States)

    Ramadas, Sivaram N; Jackson, Joseph C; Dziewierz, Jerzy; O'Leary, Richard; Gachagan, Anthony

    2014-03-01

    Two-dimensional ultrasonic phased arrays are becoming increasingly popular in nondestructive evaluation (NDE). Sparse array element configurations are required to fully exploit the potential benefits of 2-D phased arrays. This paper applies the conformal mapping technique as a means of designing sparse 2-D array layouts for NDE applications. Modeling using both Huygens' field prediction theory and 2-D fast Fourier transformation is employed to study the resulting new structure. A conformal power map was used that, for fixed beam width, was shown in simulations to have a greater contrast than rectangular or random arrays. A prototype aperiodic 2-D array configuration for direct contact operation in steel, with operational frequency ~3 MHz, was designed using the array design principle described in this paper. Experimental results demonstrate a working sparse-array transducer capable of performing volumetric imaging.

  2. An Efficient Beam Steerable Antenna Array Concept for Airborne Applications

    OpenAIRE

    Aliakbarian, H.; Van der Westhuizen, E.; Wiid, R.; Volskiy, V.; R. Wolhuter; G. A. E. Vandenbosch

    2014-01-01

    Deployment of a satellite borne, steerable antenna array with higher directivity and gain in Low Earth Orbit makes sense to reduce ground station complexity and cost, while still maintaining a reasonable link budget. The implementation comprises a digitally beam steerable phased array antenna integrated with a complete system, comprising the antenna, hosting platform, ground station, and aircraft based satellite emulator to facilitate convenient aircraft based testing of the antenna array and...

  3. Phased array antenna element for automotive radar application

    OpenAIRE

    2014-01-01

    In this thesis work, a design of reliable antenna front-end for W band automotive radar is studied and the problems and considerations associated with phased array antenna design at W-band are addressed. Proposed phased array antenna consists of on chip patch antenna which has the advantages of being integrated by the active circuitry. A sample of patch antenna and patch array are designed and fabricated to be tested for their functionality. Printing antenna on Silicon substrate is a compact ...

  4. Scanning probe and optical tweezer investigations of biomolecular interactions

    Energy Technology Data Exchange (ETDEWEB)

    Rigby-Singleton, Shellie

    2002-07-01

    A complex array of intermolecular forces controls the interactions between and within biological molecules. The desire to empirically explore the fundamental forces has led to the development of several biophysical techniques. Of these, the atomic force microscope (AFM) and the optical tweezers have been employed throughout this thesis to monitor the intermolecular forces involved in biomolecular interactions. The AFM is a well-established force sensing technique capable of measuring biomolecular interactions at a single molecule level. However, its versatility has not been extrapolated to the investigation of a drug-enzyme complex. The energy landscape for the force induced dissociation of the DHFR-methotrexate complex was studied. Revealing an energy barrier to dissociation located {approx}0.3 nm from the bound state. Unfortunately, the AFM has a limited range of accessible loading rates and in order to profile the complete energy landscape alternative force sensing instrumentation should be considered, for example the BFP and optical tweezers. Thus, this thesis outlines the development and construction an optical trap capable of measuring intermolecular forces between biomolecules at the single molecule level. To demonstrate the force sensing abilities of the optical set up, proof of principle measurements were performed which investigate the interactions between proteins and polymer surfaces subjected to varying degrees of argon plasma treatment. Complementary data was gained from measurements performed independently by the AFM. Changes in polymer resistance to proteins as a response to changes in polymer surface chemistry were detected utilising both AFM and optical tweezers measurements. Finally, the AFM and optical tweezers were employed as ultrasensitive biosensors. Single molecule investigations of the antibody-antigen interaction between the cardiac troponin I marker and its complementary antibody, reveals the impact therapeutic concentrations of heparin

  5. Acoustic Eaton lens array and its fluid application

    Science.gov (United States)

    Kim, Sang-Hoon; Sy, Pham-Van; Das, Mukunda P.

    2017-03-01

    A principle of an acoustic Eaton lens array and its application as a removable tsunami wall is proposed theoretically. The lenses are made of expandable rubber pillars or balloons and create a stop-band by rotating the incoming tsunami wave and reduce the pressure by canceling each other. The diameter of each lens is larger than the wavelength of the tsunami near the coast, that is, order of a kilometer. The impedance matching on the border of the lenses results in a little reflection. Before a tsunami, the balloons are buried underground in shallow water near the coast in folded or rounded form. Upon sounding of the tsunami alarm, water and air are pumped into the pillars, which expand and erect the wall above the sea level within a few hours. After the tsunami, the water and air are released from the pillars, which are then buried underground for reuse. Electricity is used to power the entire process. A numerical simulation with a linear tsunami model was carried out.

  6. Field Emitter Arrays for a Free Electron Laser Application

    CERN Document Server

    Shing-Bruce-Li, Kevin; Ganter, Romain; Gobrecht, Jens; Raguin, Jean Yves; Rivkin, Leonid; Wrulich, Albin F

    2004-01-01

    The development of a new electron gun with the lowest possible emittance would help reducing the total length and cost of a free electron laser. Field emitter arrays (FEAs) are an attractive technology for electron sources of ultra high brightness. Indeed, several thousands of microscopic tips can be deposited on a 1 mm diameter area. Electrons are then extracted by applying voltage to a first grid layer close to the tip apexes, the so called gate layer, and focused by a second grid layer one micrometer above the tips. The typical aperture diameter of the gate and the focusing layer is in the range of one micrometer. One challenge for such cathodes is to produce peak currents in the ampere range since the usual applications of FEAs require less than milliampere. Encouraging peak current performances have been obtained by applying voltage pulses at low frequency between gate and tips. In this paper we report on different tip materials available on the market: diamond FEAs from Extreme Devices Inc., ZrC single ...

  7. Application of multiplicative array techniques for multibeam sounder systems

    Digital Repository Service at National Institute of Oceanography (India)

    Chakraborty, B.

    modification in terms of additional computation or hardware for improved array gain. The present work is devoted towards the study of a better beamforming method i.e. a multiplicative array technique with some modification proposEd. by Brown and Rowland...

  8. Theory and applications of spherical microphone array processing

    CERN Document Server

    Jarrett, Daniel P; Naylor, Patrick A

    2017-01-01

    This book presents the signal processing algorithms that have been developed to process the signals acquired by a spherical microphone array. Spherical microphone arrays can be used to capture the sound field in three dimensions and have received significant interest from researchers and audio engineers. Algorithms for spherical array processing are different to corresponding algorithms already known in the literature of linear and planar arrays because the spherical geometry can be exploited to great beneficial effect. The authors aim to advance the field of spherical array processing by helping those new to the field to study it efficiently and from a single source, as well as by offering a way for more experienced researchers and engineers to consolidate their understanding, adding either or both of breadth and depth. The level of the presentation corresponds to graduate studies at MSc and PhD level. This book begins with a presentation of some of the essential mathematical and physical theory relevant to ...

  9. Analysis of Cylindrical Dipole Arrays for Smart Antenna Application

    Institute of Scientific and Technical Information of China (English)

    CAOXiangyu; GAOJun; K.M.Luk; LIANGChanghong

    2005-01-01

    A locally Conformal finite difference time domain (CFDTD) algorithm is studied and applied to model the radiation pattern of a linear dipole arrays mounted on a finite solid conducting cylinder. The numerical result shows that is in good agreement with the moment methods. Finally, the algorithm is applied to study smart antenna used in base station antenna. Several linear arrays mounted with uniform distribution on the cylinder are analyzed. The effects of the number of linear arrays on producing reasonably omnidirectional radiation pattern in the horizontal plane are investigated. It is shown that eight column dipole arrays may be a good choice for economical and practical considerations, and the omnidirection radiation characteristic can be better if the distance from the array axis to the cylinder surface is reduced.

  10. Multi-Element CZT Array for Nuclear Safeguards Applications

    Science.gov (United States)

    Kwak, S.-W.; Lee, A.-R.; Shin, J.-K.; Park, U.-R.; Park, S.; Kim, Y.; Chung, H.

    2016-12-01

    Due to its electronic properties, a cadmium zinc telluride (CZT) detector has been used as a hand-held portable nuclear measurement instrument. However, a CZT detector has low detection efficiency because of a limitation of its single crystal growth. To address its low efficiency, we have constructed a portable four-CZT array based gamma-ray spectrometer consisting of a CZT array, electronics for signal processing and software. Its performance has been characterized in terms of energy resolution and detection efficiency using radioactive sources and nuclear materials. Experimental results showed that the detection efficiency of the four-CZT array based gamma-ray spectrometer was much higher than that of a single CZT detector in the array. The FWHMs of the CZT array were 9, 18, and 21 keV at 185.7, 662, and 1,332 keV, respectively. Some gamma-rays in a range of 100 keV to 200 keV were not clear in a single crystal detector while those from the CZT array system were observed to be clear. The energy resolution of the CZT array system was only slightely worse than those of the single CZT detectors. By combining several single crystals and summing signals from each single detector at a digital electronic circuit, the detection efficiency of a CZT array system increased without degradation of its energy resolution. The technique outlined in this paper shows a very promising method for designing a CZT-based gamma-ray spectroscopy that overcomes the fundamental limitations of a small volume CZT detector.

  11. High NA diffractive array illuminators and application in a multi-spot scanning microscope

    NARCIS (Netherlands)

    Hulsken, B.; Vossen, D.; Stallinga, S.

    2012-01-01

    Array illuminators generating spots with high NA at high efficiency are presented. They are designed via application of high-NA scalar optics methods, and implemented as periodic binary phase structures. These array illuminators are used in a multi-spot scanning microscope for scanning large sample

  12. A Broadband and High Gain Tapered Slot Antenna for W-Band Imaging Array Applications

    Directory of Open Access Journals (Sweden)

    Dong Sik Woo

    2014-01-01

    Full Text Available A broadband and high gain tapered slot antenna (TSA by utilizing a broadband microstrip- (MS- to-coplanar stripline (CPS balun has been developed for millimeter-wave imaging systems and sensors. This antenna exhibits ultrawideband performance for frequency ranges from 70 to over 110 GHz with the high antenna gain, low sidelobe levels, and narrow beamwidth. The validity of this antenna as imaging arrays is also demonstrated by analyzing mutual couplings and 4-element linear array. This antenna can be applied to mm-wave phased array, imaging array for plasma diagnostics applications.

  13. Arc arrays: studies of high resolution techniques for multibeam bathymetric applications

    Digital Repository Service at National Institute of Oceanography (India)

    Chakraborty, B.; Schenke, H.W.

    In this paper a theoretical study is initiated to observe the utility of directional spectral estimation techniques for `arc array' geometries. We examine the suitability of a 15 degrees arc transducer geometry for multibeam bathymetric applications...

  14. Wideband Array for C, X, and Ku-Band Applications with 5.3:1 Bandwidth

    Science.gov (United States)

    Novak, Markus H.; Volakis, John L.; Miranda, Felix A.

    2015-01-01

    Planar arrays that exploit strong intentional coupling between elements have allowed for very wide bandwidths in low-profile configurations. However, such designs also require complex impedance matching networks that must also be very compact. For many space applications, typically occurring at C-, X-, Ku-, and most recently at Ka-band, such designs require specialized and expensive fabrication techniques. To address this issue, a novel ultra-wideband array is presented, using a simplified feed network to reduce fabrication cost. The array operates from 3.5-18.5 GHz with VSWR less than 2.4 at broadside, and is of very low profile, having a total height of lambda/10 at the lowest frequency of operation. Validation is provided using a 64-element prototype array, fabricated using common Printed Circuit Board (PCB) technology. The low size, weight, and cost of this array make it attractive for space-borne applications.

  15. An Efficient Beam Steerable Antenna Array Concept for Airborne Applications

    Directory of Open Access Journals (Sweden)

    H. Aliakbarian

    2014-04-01

    Full Text Available Deployment of a satellite borne, steerable antenna array with higher directivity and gain in Low Earth Orbit makes sense to reduce ground station complexity and cost, while still maintaining a reasonable link budget. The implementation comprises a digitally beam steerable phased array antenna integrated with a complete system, comprising the antenna, hosting platform, ground station, and aircraft based satellite emulator to facilitate convenient aircraft based testing of the antenna array and ground-space communication link. This paper describes the design, development and initial successful interim testing of the various subsystems. A two element prototype used in this increases the signal-to-noise ratio (SNR by 3 dB which is corresponding to more than 10 times better bit error rate (BER.

  16. Plasmonic nanopatch array for optical integrated circuit applications.

    Science.gov (United States)

    Qu, Shi-Wei; Nie, Zai-Ping

    2013-11-08

    Future plasmonic integrated circuits with the capability of extremely high-speed data processing at optical frequencies will be dominated by the efficient optical emission (excitation) from (of) plasmonic waveguides. Towards this goal, plasmonic nanoantennas, currently a hot topic in the field of plasmonics, have potential to bridge the mismatch between the wave vector of free-space photonics and that of the guided plasmonics. To manipulate light at will, plasmonic nanoantenna arrays will definitely be more efficient than isolated nanoantennas. In this article, the concepts of microwave antenna arrays are applied to efficiently convert plasmonic waves in the plasmonic waveguides into free-space optical waves or vice versa. The proposed plasmonic nanoantenna array, with nanopatch antennas and a coupled wedge plasmon waveguide, can also act as an efficient spectrometer to project different wavelengths into different directions, or as a spatial filter to absorb a specific wavelength at a specified incident angle.

  17. Plasmonic nanopatch array for optical integrated circuit applications

    Science.gov (United States)

    Qu, Shi-Wei; Nie, Zai-Ping

    2013-01-01

    Future plasmonic integrated circuits with the capability of extremely high-speed data processing at optical frequencies will be dominated by the efficient optical emission (excitation) from (of) plasmonic waveguides. Towards this goal, plasmonic nanoantennas, currently a hot topic in the field of plasmonics, have potential to bridge the mismatch between the wave vector of free-space photonics and that of the guided plasmonics. To manipulate light at will, plasmonic nanoantenna arrays will definitely be more efficient than isolated nanoantennas. In this article, the concepts of microwave antenna arrays are applied to efficiently convert plasmonic waves in the plasmonic waveguides into free-space optical waves or vice versa. The proposed plasmonic nanoantenna array, with nanopatch antennas and a coupled wedge plasmon waveguide, can also act as an efficient spectrometer to project different wavelengths into different directions, or as a spatial filter to absorb a specific wavelength at a specified incident angle. PMID:24201454

  18. Inversion of Array Induction Logs and Its Application

    Institute of Scientific and Technical Information of China (English)

    Gao Jie; Zhao Aibin; Peng Fei; Li Hongqi

    2007-01-01

    With the help of the modified geometrical factor theory, the Marquardt method was used to calculate the true electrical parameters of the formation from array induction logs. The inversion results derived from the assumed model and some practical cases show that the rebuilt formation profile determined by 2-ft resolution array induction logs is reasonable when the formation thickness is greater than 1 m, which thus indicates that the inversion method is reliable and can provide quantitative information for the discrimination of oil/gas or water zone.

  19. Ultrasonic Phased-Array Characterization for NDE Applications

    Science.gov (United States)

    Hanley, John J.; Tennis, Richard F.; Pickens, Keith S.

    1995-01-01

    Southwest Research Institute (SwRI) recently fabricated and delivered the 100-channel Ultrasonic Phased-Array Testbed System (UPATS) for NASA's Langley Research Center. NASA prepared the specifications and provided the funding to develop UPATS in order to provide a tool for the improvement of ultrasonic nondestructive evaluation (NDE) and characterization of materials. UPATS incorporates state-of-the-art phased-array concepts such as beam steering, focusing, apodization, and phase-sensitive detection which make it possible to develop more sophisticated testing methodologies. It also can be used to investigate fundamental ultrasonic propagation and detection phenomena such as refraction, diffraction, scattering, and beam broadening.

  20. Microstrip Yagi array for MSAT vehicle antenna application

    Science.gov (United States)

    Huang, John; Densmore, Arthur; Pozar, David

    1990-01-01

    A microstrip Yagi array was developed for the MSAT system as a low-cost mechanically steered medium-gain vehicle antenna. Because its parasitic reflector and director patches are not connected to any of the RF power distributing circuit, while still contributing to achieve the MSAT required directional beam, the antenna becomes a very efficient radiating system. With the complete monopulse beamforming circuit etched on a thin stripline board, the planar microstrip Yagi array is capable of achieving a very low profile. A theoretical model using the Method of Moments was developed to facilitate the ease of design and understanding of this antenna.

  1. Origin of organic molecules and biomolecular homochirality.

    Science.gov (United States)

    Podlech, J

    2001-01-01

    Theories about the origin of biomolecular homochirality, which seems to be a prerequisite for the creation of life, are discussed. First, possible terrestrial and extraterrestrial sources of organic molecules are outlined. Then, mechanisms for the formation of enantiomerically enriched compounds and for the amplification of their chirality are described.

  2. Thermodynamic properties of water solvating biomolecular surfaces

    Science.gov (United States)

    Heyden, Matthias

    Changes in the potential energy and entropy of water molecules hydrating biomolecular interfaces play a significant role for biomolecular solubility and association. Free energy perturbation and thermodynamic integration methods allow calculations of free energy differences between two states from simulations. However, these methods are computationally demanding and do not provide insights into individual thermodynamic contributions, i.e. changes in the solvent energy or entropy. Here, we employ methods to spatially resolve distributions of hydration water thermodynamic properties in the vicinity of biomolecular surfaces. This allows direct insights into thermodynamic signatures of the hydration of hydrophobic and hydrophilic solvent accessible sites of proteins and small molecules and comparisons to ideal model surfaces. We correlate dynamic properties of hydration water molecules, i.e. translational and rotational mobility, to their thermodynamics. The latter can be used as a guide to extract thermodynamic information from experimental measurements of site-resolved water dynamics. Further, we study energy-entropy compensations of water at different hydration sites of biomolecular surfaces. This work is supported by the Cluster of Excellence RESOLV (EXC 1069) funded by the Deutsche Forschungsgemeinschaft.

  3. Analysis of Eigenspace Dynamics with Applications to Array Processing

    Science.gov (United States)

    2014-09-30

    be met in most practical situations,1-2 in which large-aperture arrays operate in the presence of fast maneuvering interferers, or with towed...the improvement of subspace beamforming processors , in which the data snapshots are projected into particular subspaces of interest such as mm xPy

  4. Dimpled Ball Grid Array process development for space flight applications

    Science.gov (United States)

    Barr, S. L.; Mehta, A.

    2000-01-01

    The 472 Dimpled Ball Grid Array (D-BGA) package has not been used in past space flight environments, therefore it is necessary to determine the robustness and reliability of the solder joints. The 472 D-BGA packages passed the above environmental tests within the specifications and are now qualified for use on space flight electronics.

  5. A head and neck hyperthermia applicator: Theoretical antenna array design

    NARCIS (Netherlands)

    Paulides, M.M.; Bakker, J.F.; Zwamborn, A.P.M.; Rhoon, G.C. van

    2007-01-01

    Purpose: Investigation into the feasibility of a circular array of dipole antennas to deposit RF-energy centrally in the neck as a function of: 1) patient positioning, 2) antenna ring radius, 3) number of antenna rings, 4) number of antennas per ring and 5) distance between antenna rings. Materials

  6. A head and neck hyperthermia applicator: Theoretical antenna array design

    NARCIS (Netherlands)

    M.M. Paulides (Margarethus); J.F. Bakker (Jurriaan); A.P.M. Zwamborn; G.C. van Rhoon (Gerard)

    2007-01-01

    textabstractPurpose: Investigation into the feasibility of a circular array of dipole antennas to deposit RF-energy centrally in the neck as a function of: (1) patient positioning, (2) antenna ring radius, (3) number of antenna rings, (4) number of antennas per ring and (5) distance between antenna

  7. Microstrip Yagi array antenna for mobile satellite vehicle application

    Science.gov (United States)

    Huang, John; Densmore, Arthur C.

    1991-01-01

    A novel antenna structure formed by combining the Yagi-Uda array concept and the microstrip radiator technique is discussed. This antenna, called the microstrip Yagi array, has been developed for the mobile satellite (MSAT) system as a low-profile, low-cost, and mechanically steered medium-gain land-vehicle antenna. With the antenna's active patches (driven elements) and parasitic patches (reflector and director elements) located on the same horizontal plane, the main beam of the array can be tilted, by the effect of mutual coupling, in the elevation direction providing optimal coverage for users in the continental United States. Because the parasitic patches are not connected to any of the lossy RF power distributing circuit the antenna is an efficient radiating system. With the complete monopulse beamforming and power distributing circuits etched on a single thin stripline board underneath the microstrip Yagi array, the overall L-band antenna system has achieved a very low profile for vehicle's rooftop mounting, as well as a low manufacturing cost. Experimental results demonstrate the performance of this antenna.

  8. Sunflower array antenna for multi-beam satellite applications

    NARCIS (Netherlands)

    Vigano, M.C.

    2011-01-01

    Saving space on board, reducing costs and improving the antenna performances are tasks of outmost importance in the field of satellite communication. In this work it is shown how a non-uniformly spaced, direct radiating array designed according to the so called ‘sunflower’ law is able to satisfy str

  9. Computer Programming and Biomolecular Structure Studies: A Step beyond Internet Bioinformatics

    Science.gov (United States)

    Likic, Vladimir A.

    2006-01-01

    This article describes the experience of teaching structural bioinformatics to third year undergraduate students in a subject titled "Biomolecular Structure and Bioinformatics." Students were introduced to computer programming and used this knowledge in a practical application as an alternative to the well established Internet bioinformatics…

  10. Phased-array radar design application of radar fundamentals

    CERN Document Server

    Jeffrey, Thomas

    2009-01-01

    Phased-Array Radar Design is a text-reference designed for electrical engineering graduate students in colleges and universities as well as for corporate in-house training programs for radar design engineers, especially systems engineers and analysts who would like to gain hands-on, practical knowledge and skills in radar design fundamentals, advanced radar concepts, trade-offs for radar design and radar performance analysis.

  11. Applications of array processors in the analysis of remote sensing images

    Science.gov (United States)

    Ramapriyan, H. K.; Strong, J. P.

    1984-01-01

    The architectures, programming characteristics, and ranges of application of past, present, and planned array processors for the digital processing of remote-sensing images are compared. Such functions as radiometric and geometric corrections, principal-components analysis, cluster coding, histogram generation, grey-level mapping, convolution, classification, and mensuration and modeling operations are considered, and both pipeline-type and single-instruction/multiple-data-stream (SIMD) arrays are evaluated. Numerical results are presented in a table, and it is found that the pipeline-type arrays normally used with minicomputers increase their speed significantly at low cost, while even further gains are provided by the more expensive SIMD arrays. Most image-processing operations become I/O-limited when SIMD arrays are used with current I/O devices.

  12. Asymmetrical floating point array processors, their application to exploration and exploitation

    Energy Technology Data Exchange (ETDEWEB)

    Geriepy, B.L.

    1983-01-01

    An asymmetrical floating point array processor is a special-purpose scientific computer which operates under asymmetrical control of a host computer. Although an array processor can receive fixed point input and produce fixed point output, its primary mode of operation is floating point. The first generation of array processors was oriented towards time series information. The next generation of array processors has proved much more versatile and their applicability ranges from petroleum reservoir simulation to speech syntheses. Array processors are becoming commonplace in mining, the primary usage being construction of grids-by usual methods or by kriging. The Australian mining community is among the world's leaders in regard to computer-assisted exploration and exploitation systems. Part of this leadership role must be providing guidance to computer vendors in regard to current and future requirements.

  13. A Comparative Performance Analysis of Two Printed Circular Arrays for Power-Based Vehicle Localization Applications

    Directory of Open Access Journals (Sweden)

    Mohammad S. Sharawi

    2012-01-01

    Full Text Available A comparative study of the performance characteristics of a printed 8-element V-shaped circular antenna array and an 8-element Yagi circular array operating at 2.45 GHz for vehicular direction finding applications is presented. Two operating modes are investigated; switched and phased modes. The arrays were fabricated on FR-4 substrates with 0.8 mm thickness. Measured and simulated results were compared. Radiation gain patterns were measured on a 1 m diameter ground plane that resembles the rooftop of a vehicle. The HPBW of the Yagi was found to be about 3° narrower than its V-shaped counterpart when measured above a reflecting ground plane and operated in switched mode. The printed V-shaped antenna array offers 2.5 dB extra gain compared to the printed Yagi array.

  14. Advanced reflector characterization with ultrasonic phased arrays in NDE applications.

    Science.gov (United States)

    Wilcox, Paul D; Holmes, Caroline; Drinkwater, Bruce W

    2007-08-01

    Ultrasonic arrays are increasingly widely used in nondestructive evaluation (NDE) due to their greater flexibility and potentially superior performance compared to conventional monolithic probes. The characterization of small defects remains a challenge for NDE and is of great importance for determining the impact of a defect on the integrity of a structure. In this paper, a technique for characterizing reflectors with subwavelength dimensions is described. This is achieved by post-processing the complete data set of time traces obtained from an ultrasonic array using two algorithms. The first algorithm is used to obtain information about reflector orientation and the second algorithm is used to distinguish between point-like reflectors that reflect uniformly in all directions and specular reflectors that have distinct orientations. Experimental results are presented using a commercial 64-element, 5-MHZ array on two aluminum test specimens that contain a number of machined slots and side-drilled holes. The results show that the orientation of 1-mm-long slots can be determined to within a few degrees and that the signals from 1-mm-long slots can be distinguished from that from a 1-mm-diameter circular hole. Techniques for quantifying both the orientation and the specularity of measured signals are presented and the effect of processing parameters on the accuracy of results is discussed.

  15. The application of taylor weighting, digital phase shifters, and digital attenuators to phased-array antennas.

    Energy Technology Data Exchange (ETDEWEB)

    Brock, Billy C.

    2008-03-01

    Application of Taylor weighting (taper) to an antenna aperture can achieve low peak sidelobes, but combining the Taylor weighting with quantized attenuators and phase shifters at each radiating element will impact the performance of a phased-array antenna. An examination of array performance is undertaken from the simple point of view of the characteristics of the array factor. Design rules and guidelines for determining the Taylor-weighting parameters, the number of bits required for the digital phase shifter, and the dynamic range and number of bits required for the digital attenuator are developed. For a radar application, when each element is fed directly from a transmit/receive module, the total power radiated by the array will be reduced as a result of the taper. Consequently, the issue of whether to apply the taper on both transmit and receive configurations, or only on the receive configuration is examined with respect to two-way sidelobe performance.

  16. Design of a Compact Wideband Antenna Array for Microwave Imaging Applications

    Directory of Open Access Journals (Sweden)

    J. Puskely

    2013-12-01

    Full Text Available In the paper, wideband antenna arrays aimed at microwave imaging applications and SAR applications operating at Ka band were designed. The antenna array feeding network is realized by a low-loss SIW technology. Moreover, we have replaced the large feed network comprised of various T and Y junctions by a simple broadband network of compact size to more reduce losses in the substrate integrated waveguide and also save space on the PCB. The designed power 8-way divider is complemented by a wideband substrate integrated waveguide to a grounded coplanar waveguide transition and directly connected to the antenna elements. The measured results of antenna array are consistent with our simulation. Obtained results of the developed array demonstrated improvement compared to previously developed binary feed networks with microstrip or SIW splitters.

  17. A Compact Design of Planar Array Antenna with Fractal Elements for Future Generation Applications

    DEFF Research Database (Denmark)

    Ojaroudiparchin, Naser; Shen, Ming; Pedersen, Gert F.

    2016-01-01

    In this paper, a planar phased array fractal antenna for the future fifth generation (5G) applications is presented. The proposed array antenna is designed to operate at 22 GHz. 64 patch antenna elements with coaxial-probe feeds have been used for the proposed design. The antenna elements are based...... on Vicsek fractal geometry where the third iteration patches operate over a wide bandwidth and contribute to improve the efficiency and realized gain performance. The designed planar array has more than 22 dB realized gain and -0.3 dB total efficiency when its beam is tilted to 0 degrees elevation...

  18. MPBEC, a Matlab Program for Biomolecular Electrostatic Calculations.

    Science.gov (United States)

    Vergara-Perez, Sandra; Marucho, Marcelo

    2016-01-01

    One of the most used and efficient approaches to compute electrostatic properties of biological systems is to numerically solve the Poisson-Boltzmann (PB) equation. There are several software packages available that solve the PB equation for molecules in aqueous electrolyte solutions. Most of these software packages are useful for scientists with specialized training and expertise in computational biophysics. However, the user is usually required to manually take several important choices, depending on the complexity of the biological system, to successfully obtain the numerical solution of the PB equation. This may become an obstacle for researchers, experimentalists, even students with no special training in computational methodologies. Aiming to overcome this limitation, in this article we present MPBEC, a free, cross-platform, open-source software that provides non-experts in the field an easy and efficient way to perform biomolecular electrostatic calculations on single processor computers. MPBEC is a Matlab script based on the Adaptative Poisson Boltzmann Solver, one of the most popular approaches used to solve the PB equation. MPBEC does not require any user programming, text editing or extensive statistical skills, and comes with detailed user-guide documentation. As a unique feature, MPBEC includes a useful graphical user interface (GUI) application which helps and guides users to configure and setup the optimal parameters and approximations to successfully perform the required biomolecular electrostatic calculations. The GUI also incorporates visualization tools to facilitate users pre- and post- analysis of structural and electrical properties of biomolecules.

  19. MPBEC, a Matlab Program for Biomolecular Electrostatic Calculations

    Science.gov (United States)

    Vergara-Perez, Sandra; Marucho, Marcelo

    2016-01-01

    One of the most used and efficient approaches to compute electrostatic properties of biological systems is to numerically solve the Poisson-Boltzmann (PB) equation. There are several software packages available that solve the PB equation for molecules in aqueous electrolyte solutions. Most of these software packages are useful for scientists with specialized training and expertise in computational biophysics. However, the user is usually required to manually take several important choices, depending on the complexity of the biological system, to successfully obtain the numerical solution of the PB equation. This may become an obstacle for researchers, experimentalists, even students with no special training in computational methodologies. Aiming to overcome this limitation, in this article we present MPBEC, a free, cross-platform, open-source software that provides non-experts in the field an easy and efficient way to perform biomolecular electrostatic calculations on single processor computers. MPBEC is a Matlab script based on the Adaptative Poisson-Boltzmann Solver, one of the most popular approaches used to solve the PB equation. MPBEC does not require any user programming, text editing or extensive statistical skills, and comes with detailed user-guide documentation. As a unique feature, MPBEC includes a useful graphical user interface (GUI) application which helps and guides users to configure and setup the optimal parameters and approximations to successfully perform the required biomolecular electrostatic calculations. The GUI also incorporates visualization tools to facilitate users pre- and post-analysis of structural and electrical properties of biomolecules.

  20. Biomolecular engineered sensors for diagnostic applications

    OpenAIRE

    Marti Villalba, M

    2009-01-01

    Electrochemistry is a powerful technique that offers multiple possibilities and which is in constant evolution. Simple modifications of the electrode surface can result in an improvement of the selectivity and sensitivity of the method. However some situations require more complex modifications such as the incorporation of an external agent to the electrode surface, or within the actual electrode. This thesis describes the development and characterization of a range of novel electrochemical s...

  1. Application of the anisotropy field distribution method to arrays of magnetic nanowires

    OpenAIRE

    De La Torre Medina, Joaquin; Darques, Michaël; Piraux, Luc; Encinas, Armando

    2009-01-01

    The applicability of the anisotropy field distribution method and the conditions required for an accurate determination of the effective anisotropy field in arrays of magnetic nanowires have been evaluated. In arrays of magnetic nanowires that behave as ideal uniaxial systems having only magnetostatic contributions to the effective anisotropy field, i.e., shape anisotropy and magnetostatic coupling, the method yields accurate values of the average anisotropy field at low-moderate dipolar coup...

  2. Carbon Nanotube Arrays for Intracellular Delivery and Biological Applications

    Science.gov (United States)

    Golshadi, Masoud

    Introducing nucleic acids into mammalian cells is a crucial step to elucidate biochemical pathways, modify gene expression in immortalized cells, primary cells, and stem cells, and intoduces new approaches for clinical diagnostics and therapeutics. Current gene transfer technologies, including lipofection, electroporation, and viral delivery, have enabled break-through advances in basic and translational science to enable derivation and programming of embryonic stem cells, advanced gene editing using CRISPR (Clustered regularly interspaced short palindromic repeats), and development of targeted anti-tumor therapy using chimeric antigen receptors in T-cells (CAR-T). Despite these successes, current transfection technologies are time consuming and limited by the inefficient introduction of test molecules into large populations of target cells, and the cytotoxicity of the techniques. Moreover, many cell types cannot be consistently transfected by lipofection or electroporation (stem cells, T-cells) and viral delivery has limitations to the size of experimental DNA that can be packaged. In this dissertation, a novel coverslip-like platform consisting of an array of aligned hollow carbon nanotubes (CNTs) embedded in a sacrificial template is developed that enhances gene transfer capabilities, including high efficiency, low toxicity, in an expanded range of target cells, with the potential to transfer mixed combinations of protein and nucleic acids. The CNT array devices are fabricated by a scalable template-based manufacturing method using commercially available membranes, eliminating the need for nano-assembly. High efficient transfection has been demonstrated by delivering various cargos (nanoparticles, dye and plasmid DNA) into populations of cells, achieving 85% efficiency of plasmid DNA delivery into immortalized cells. Moreover, the CNT-mediated transfection of stem cells shows 3 times higher efficiency compared to current lipofection methods. Evaluating the cell

  3. Two-stage series array SQUID amplifier for space applications

    Science.gov (United States)

    Tuttle, J. G.; DiPirro, M. J.; Shirron, P. J.; Welty, R. P.; Radparvar, M.

    We present test results for a two-stage integrated SQUID amplifier which uses a series array of d.c. SQUIDS to amplify the signal from a single input SQUID. The device was developed by Welty and Martinis at NIST and recent versions have been manufactured by HYPRES, Inc. Shielding and filtering techniques were employed during the testing to minimize the external noise. Energy resolution of 300 h was demonstrated using a d.c. excitation at frequencies above 1 kHz, and better than 500 h resolution was typical down to 300 Hz.

  4. New Applications of Electrochemically Produced Porous Semiconductors and Nanowire Arrays

    Directory of Open Access Journals (Sweden)

    Leisner Malte

    2010-01-01

    Full Text Available Abstract The growing demand for electro mobility together with advancing concepts for renewable energy as primary power sources requires sophisticated methods of energy storage. In this work, we present a Li ion battery based on Si nanowires, which can be produced reliable and cheaply and which shows superior properties, such as a largely increased capacity and cycle stability. Sophisticated methods based on electrochemical pore etching allow to produce optimized regular arrays of nanowires, which can be stabilized by intrinsic cross-links, which serve to avoid unwanted stiction effects and allow easy processing.

  5. Improvements in continuum modeling for biomolecular systems

    CERN Document Server

    Qiao, Yu

    2015-01-01

    Modeling of biomolecular systems plays an essential role in understanding biological processes, such as ionic flow across channels, protein modification or interaction, and cell signaling. The continuum model described by the Poisson-Boltzmann (PB)/Poisson-Nernst-Planck (PNP) equations has made great contributions towards simulation of these processes. However, the model has shortcomings in its commonly used form and cannot capture (or cannot accurately capture) some important physical properties of biological systems. Considerable efforts have been made to improve the continuum model to account for discrete particle interactions and to make progress in numerical methods to provide accurate and efficient simulation. This review will summarize recent main improvements in continuum modeling for biomolecular systems, with focus on the size-modified models, the coupling of the classical density functional theory and PNP equations, the coupling of polar and nonpolar interactions, and numerical progress.

  6. A statistical mechanical description of biomolecular hydration

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-02-01

    We present an efficient and accurate theoretical description of the structural hydration of biological macromolecules. The hydration of molecules of almost arbitrary size (tRNA, antibody-antigen complexes, photosynthetic reaction centre) can be studied in solution and in the crystal environment. The biomolecular structure obtained from x-ray crystallography, NMR, or modeling is required as input information. The structural arrangement of water molecules near a biomolecular surface is represented by the local water density analogous to the corresponding electron density in an x-ray diffraction experiment. The water-density distribution is approximated in terms of two- and three-particle correlation functions of solute atoms with water using a potentials-of-mean-force expansion.

  7. Large-area nanogap plasmon resonator arrays for plasmonics applications

    Science.gov (United States)

    Jin, Mingliang; van Wolferen, Henk; Wormeester, Herbert; van den Berg, Albert; Carlen, Edwin T.

    2012-07-01

    Large-area (~8000 mm2) Au nanogap plasmon resonator array substrates manufactured using maskless laser interference lithography (LIL) with high uniformity are presented. The periodically spaced subwavelength nanogap arrays are formed between adjacent nanopyramid (NPy) structures with precisely defined pitch and high length density (~1 km cm-2), and are ideally suited as scattering sites for surface enhanced Raman scattering (SERS), as well as refractive index sensing. The two-dimensional grid arrangement of NPy structures renders the excitation of the plasmon resonators minimally dependent on the incident polarization. The SERS average enhancement factor (AEF) has been characterized using over 30 000 individual measurements of benzenethiol (BT) chemisorbed on the Au NPy surfaces. From the 1(a1), βCCC + νCS ring mode (1074 cm-1) of BT on surfaces with pitch λg = 200 nm, AEF = 0.8 × 106 and for surfaces with λg = 500 nm, AEF = 0.3 × 107 from over 99% of the imaged spots. Maximum AEFs > 108 have been measured in both cases.

  8. Solution processed semiconductor alloy nanowire arrays for optoelectronic applications

    Science.gov (United States)

    Shimpi, Paresh R.

    In this dissertation, we use ZnO nanowire as a model system to investigate the potential of solution routes for bandgap engineering in semiconductor nanowires. Excitingly, successful Mg-alloying into ZnO nanowire arrays has been achieved using a two-step sequential hydrothermal method at low temperature (green-yellow-red band (˜400-660 nm) increased whereas intensity of NBE UV peak decreased and completely got quenched. This might be due to interface diffusion of oxidized Si (SiOx) and formation of (Zn,Mg)1.7SiO4 epitaxially overcoated around individual ZnMgO nanowire. On the other hand, ambient annealed ZnMgO nanowires grown on quartz showed a ˜6-10 nm blue-shift in NBE UV emission, indicating significantly enhanced inter-diffusion of Mg into ZnO nanowires in this oxygen-rich environment. The successfully developed solution process for semiconductor nanowires alloying has few advantages in low cost, large yield, environmental friendliness and low reaction temperature. This solution processed ZnMgO nanowire arrays could provide a new class of nanoscale building blocks for various optoelectronic devices in UV lighting and visible solar energy harvesting.

  9. Biomolecular electrostatics and solvation: a computational perspective.

    Science.gov (United States)

    Ren, Pengyu; Chun, Jaehun; Thomas, Dennis G; Schnieders, Michael J; Marucho, Marcelo; Zhang, Jiajing; Baker, Nathan A

    2012-11-01

    An understanding of molecular interactions is essential for insight into biological systems at the molecular scale. Among the various components of molecular interactions, electrostatics are of special importance because of their long-range nature and their influence on polar or charged molecules, including water, aqueous ions, proteins, nucleic acids, carbohydrates, and membrane lipids. In particular, robust models of electrostatic interactions are essential for understanding the solvation properties of biomolecules and the effects of solvation upon biomolecular folding, binding, enzyme catalysis, and dynamics. Electrostatics, therefore, are of central importance to understanding biomolecular structure and modeling interactions within and among biological molecules. This review discusses the solvation of biomolecules with a computational biophysics view toward describing the phenomenon. While our main focus lies on the computational aspect of the models, we provide an overview of the basic elements of biomolecular solvation (e.g. solvent structure, polarization, ion binding, and non-polar behavior) in order to provide a background to understand the different types of solvation models.

  10. Glycan Arrays: From Basic Biochemical Research to Bioanalytical and Biomedical Applications

    Science.gov (United States)

    Geissner, Andreas; Seeberger, Peter H.

    2016-06-01

    A major branch of glycobiology and glycan-focused biomedicine studies the interaction between carbohydrates and other biopolymers, most importantly, glycan-binding proteins. Today, this research into glycan-biopolymer interaction is unthinkable without glycan arrays, tools that enable high-throughput analysis of carbohydrate interaction partners. Glycan arrays offer many applications in basic biochemical research, for example, defining the specificity of glycosyltransferases and lectins such as immune receptors. Biomedical applications include the characterization and surveillance of influenza strains, identification of biomarkers for cancer and infection, and profiling of immune responses to vaccines. Here, we review major applications of glycan arrays both in basic and applied research. Given the dynamic nature of this rapidly developing field, we focus on recent findings.

  11. Multi-lead ECG electrode array for clinical application of electrocardiographic inverse problem.

    Science.gov (United States)

    Hintermuller, Christoph; Fischer, Gerald; Seger, Michael; Pfeifer, Bernhard; Hanser, Friedrich; Modre, Robert; Tilg, Bernhard

    2004-01-01

    Methods for noninvasive imaging of electric function of the heart might become clinical standard procedure the next years. Thus, the overall procedure has to meet clinical requirements as easy and fast application. In this study we propose a new electrode array which improves the information content in the ECG map, considering clinical constraints such as easy to apply and compatibility with routine leads. A major challenge is the development of an electrode array which yields a high information content even for a large interindividual variation in torso shape. For identifying regions of high information content we introduce the concept of a locally applied virtual electrode array. As a result of our analysis we constructed a new electrode array consisting of two L-shaped regular spaced parts and compared it to the electrode array we use for clinical studies upon activation time imaging. We assume that one side effect caused by the regular shape and spacing of the new array be that the reconstruction of electrodes placed on the patients back is simplified. It may be sufficient to record a few characteristic electrode positions and merge them with a model of the posterior array.

  12. Biomolecular interactions: essential instrumentation methods.

    Science.gov (United States)

    Messina, Paula Veronica; Ruso, Juan Manuel

    2013-01-01

    The main goal of this review is to outline the basic principles and applications of the broad range of modern biophysical technical methods used to study the different aspects of protein–ligand interactions by discussing such aspects as newer systems, unusual approaches and highly used techniques.

  13. Steerable Space Fed Lens Array for Low-Cost Adaptive Ground Station Applications

    Science.gov (United States)

    Lee, Richard Q.; Popovic, Zoya; Rondineau, Sebastien; Miranda, Felix A.

    2007-01-01

    The Space Fed Lens Array (SFLA) is an alternative to a phased array antenna that replaces large numbers of expensive solid-state phase shifters with a single spatial feed network. SFLA can be used for multi-beam application where multiple independent beams can be generated simultaneously with a single antenna aperture. Unlike phased array antennas where feed loss increases with array size, feed loss in a lens array with more than 50 elements is nearly independent of the number of elements, a desirable feature for large apertures. In addition, SFLA has lower cost as compared to a phased array at the expense of total volume and complete beam continuity. For ground station applications, both of these tradeoff parameters are not important and can thus be exploited in order to lower the cost of the ground station. In this paper, we report the development and demonstration of a 952-element beam-steerable SFLA intended for use as a low cost ground station for communicating and tracking of a low Earth orbiting satellite. The dynamic beam steering is achieved through switching to different feed-positions of the SFLA via a beam controller.

  14. Parameterizing Quasiperiodicity: Generalized Poisson Summation and Its Application to Modified-Fibonacci Antenna Arrays

    CERN Document Server

    Galdi, V; Pierro, V; Pinto, I M; Felsen, L B; Galdi, Vincenzo; Castaldi, Giuseppe; Pierro, Vincenzo; Pinto, Innocenzo M.; Felsen, Leopold B.

    2005-01-01

    The fairly recent discovery of "quasicrystals", whose X-ray diffraction patterns reveal certain peculiar features which do not conform with spatial periodicity, has motivated studies of the wave-dynamical implications of "aperiodic order". Within the context of the radiation properties of antenna arrays, an instructive novel (canonical) example of wave interactions with quasiperiodic order is illustrated here for one-dimensional (1-D) array configurations based on the "modified-Fibonacci" sequence, with utilization of a two-scale generalization of the standard Poisson summation formula for periodic arrays. This allows for a "quasi-Floquet" analytic parameterization of the radiated field, which provides instructive insights into some of the basic wave mechanisms associated with quasiperiodic order, highlighting similarities and differences with the periodic case. Examples are shown for quasiperiodic infinite and spatially-truncated arrays, with brief discussion of computational issues and potential application...

  15. Investigation of the Sequential Rotation Technique and its Application in Phased Arrays

    DEFF Research Database (Denmark)

    Larsen, Niels Vesterdal

    2007-01-01

    This report documents the investigations of the sequential rotation technique in application to phased array antennas. A spherical wave expansion for the far field of sequentially phased arrays is derived for general antenna elements. This model is approximate in that it assumes that the element...... patterns are identical and it does not included the effects of mutual coupling between the elements. For this reason it is compared with more accurate numerical models which include the coupling effects. The results show that the sequential rotation technique generally improves the performance...... of the phased array also when it is scanned off bore sight. For array topologies where the elements are not positioned rotationally symmetric the performance of the sequential rotation is to some extent impaired by the mutual coupling and non-identical element patterns. These effects are not evident from...

  16. Hydrothermal synthesis of porous Co(OH)2 nanoflake array film and its supercapacitor application

    Indian Academy of Sciences (India)

    Z Chen; Y Chen; C Zuo; S Zhou; A G Xiao; A X Pan

    2013-04-01

    Porous -Co(OH)2 nanoflake array film is prepared by a facile hydrothermal synthesis method. The -Co(OH)2 nanoflake array film exhibits a highly porous net-like structure composed of interconnected nanoflakes with a thickness of 15 nm. The pseudo-capacitive behaviour of the Co(OH)2 nanoflake array film is investigated by cyclic voltammograms (CV) and galvanostatic charge–discharge tests in 2MKOH. The -Co(OH)2 nanoflake array film exhibits high capacitances of 1017 F g-1 at 2Ag-1 and 890 F g-1 at 40Ag-1 as well as rather good cycling stability for supercapacitor application. The porous architecture is responsible for the enhancement of the electrochemical properties because it provides fast ion and electron transfer, large reaction surface area and good strain accommodation.

  17. Body conformable 915 MHz microstrip array applicators for large surface area hyperthermia

    Energy Technology Data Exchange (ETDEWEB)

    Lee, E.R.; Tarczy-Hornoch, P.; Kapp, S.; Fessenden, P.; Lohrbach, A.W.; Prionas, S.D. (Stanford University Medical Center, CA (United States)); Wilsey, T. (Carian Associates, Palo Alto, CA (United States))

    1992-01-01

    The optimal treatment with hyperthermia of superficially located tumors which involve large surface areas requires applicators which can physically conform to body contours, and locally alter their power deposition patterns to adjust for nonuniform temperature caused by tissue inhomogeneities and blood flow variations. A series of 915 MHz microstrip array applicators satisfying these criteria have been developed and clinically tested. Clinical and engineering design tradeoffs for practical devices are discussed. Measurements taken in tissue equivalent phantoms and a summary of clinical experiences with these microstrip arrays are presented.

  18. Barcoded microchips for biomolecular assays.

    Science.gov (United States)

    Zhang, Yi; Sun, Jiashu; Zou, Yu; Chen, Wenwen; Zhang, Wei; Xi, Jianzhong Jeff; Jiang, Xingyu

    2015-01-20

    Multiplexed assay of analytes is of great importance for clinical diagnostics and other analytical applications. Barcode-based bioassays with the ability to encode and decode may realize this goal in a straightforward and consistent manner. We present here a microfluidic barcoded chip containing several sets of microchannels with different widths, imitating the commonly used barcode. A single barcoded microchip can carry out tens of individual protein/nucleic acid assays (encode) and immediately yield all assay results by a portable barcode reader or a smartphone (decode). The applicability of a barcoded microchip is demonstrated by human immunodeficiency virus (HIV) immunoassays for simultaneous detection of three targets (anti-gp41 antibody, anti-gp120 antibody, and anti-gp36 antibody) from six human serum samples. We can also determine seven pathogen-specific oligonucleotides by a single chip containing both positive and negative controls.

  19. Mussel byssus and biomolecular materials.

    Science.gov (United States)

    Deming, T J

    1999-02-01

    Mussel adhesive proteins are remarkable materials that display an extraordinary capability to adhere to substrates underwater. Recent investigations from groups with quite diverse areas of expertise have made substantial progress in the identification of the genes and proteins that are involved in adhesive formation. These discoveries have led to the development of recombinant proteins and synthetic polypeptides that are able to reproduce the properties of mussel adhesives for applications in medicine and biotechnology.

  20. Preparation, applications, and digital simulation of carbon interdigitated array electrodes.

    Science.gov (United States)

    Liu, Fei; Kolesov, Grigory; Parkinson, B A

    2014-08-05

    Carbon interdigitated array (IDA) electrodes with features sizes down to 1.2 μm were fabricated by controlled pyrolysis of patterned photoresist. Cyclic voltammetry of reversible redox species produced the expected steady-state currents. The collection efficiency depends on the IDA electrode spacing, which ranged from around 2.7 to 16.5 μm, with the smaller dimensions achieving higher collection efficiencies of up to 98%. The signal amplification because of redox cycling makes it possible to detect species at relatively low concentrations (10(-5) molar) and the small spacing allows detection of transient electrogenerated species with much shorter lifetimes (submillisecond). Digital simulation software that accounts for both the width and height of electrode elements as well as the electrode spacing was developed to model the IDA electrode response. The simulations are in quantitative agreement with experimental data for both a simple fast one electron redox reaction and an electron transfer with a following chemical reaction at the IDAs with larger gaps whereas currents measured for the smallest IDA electrodes, that were larger than the simulated currents, are attributed to convection from induced charge electrokinetic flow.

  1. Preparation, Applications, and Digital Simulation of Carbon Interdigitated Array Electrodes

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Fei; Kolesov, Grigory; Parkinson, Bruce A.

    2014-12-16

    Carbon interdigitated array (IDA) electrodes with features sizes down to 1.2 μm were fabricated by controlled pyrolysis of patterned photoresist. Cyclic voltam-metry of reversible redox species produced the expected steady-state currents. The collection efficiency depends on the IDA electrode spacing, which ranged from around 2.7 to 16.5 μm, with the smaller dimensions achieving higher collection efficiencies of up to 98%. The signal amplification because of redox cycling makes it possible to detect species at relatively low concentrations (10–5 molar) and the small spacing allows detection of transient electrogenerated species with much shorter lifetimes (submillisecond). Digital simulation software that accounts for both the width and height of electrode elements as well as the electrode spacing was developed to model the IDA electrode response. The simulations are in quantitative agreement with experimental data for both a simple fast one electron redox reaction and an electron transfer with a following chemical reaction at the IDAs with larger gaps whereas currents measured for the smallest IDA electrodes, that were larger than the simulated currents, are attributed to convection from induced charge electrokinetic flow. This work was supported as part of the Center for Molecular Electrocatalysis, an Energy Frontier Research Center funded by the Department of Energy, Office of Science Office of Basic Energy Sciences.

  2. Ion cyclotron and lower hybrid arrays applicable to current drive in fusion reactors

    Science.gov (United States)

    Bosia, G.; Helou, W.; Goniche, M.; Hillaret, J.; Ragona, R.

    2014-02-01

    This paper presents concepts for Ion Cyclotron and Lower Hybrid Current Drive arrays applicable to fusion reactors and based on periodically loaded line power division. It is shown that, in large arrays, such as the ones proposed for fusion reactor applications, these schemes can offer, in principle, a number of practical advantages, compared with currently adopted ones, such as in-blanket operation at significantly reduced power density, lay out suitable for water cooling, single ended or balanced power feed, simple and load independent impedance matching In addition, a remote and accurate real time measurement of the complex impedance of all array elements as well as detection, location, and measurement of the complex admittance of a single arc occurring anywhere in the structure is possible.

  3. Characterization of SPAD Array for Multifocal High-Content Screening Applications

    Directory of Open Access Journals (Sweden)

    Anthony Tsikouras

    2016-10-01

    Full Text Available Current instruments used to detect specific protein-protein interactions in live cells for applications in high-content screening (HCS are limited by the time required to measure the lifetime. Here, a 32 × 1 single-photon avalanche diode (SPAD array was explored as a detector for fluorescence lifetime imaging (FLIM in HCS. Device parameters and characterization results were interpreted in the context of the application to determine if the SPAD array could satisfy the requirements of HCS-FLIM. Fluorescence lifetime measurements were performed using a known fluorescence standard; and the recovered fluorescence lifetime matched literature reported values. The design of a theoretical 32 × 32 SPAD array was also considered as a detector for a multi-point confocal scanning microscope.

  4. Simulation of Parallel Logical Operations with Biomolecular Computing

    Directory of Open Access Journals (Sweden)

    Mahnaz Kadkhoda

    2008-01-01

    Full Text Available Biomolecular computing is the computational method that uses the potential of DNA as a parallel computing device. DNA computing can be used to solve NP-complete problems. An appropriate application of DNA computation is large-scale evaluation of parallel computation models such as Boolean Circuits. In this study, we present a molecular-based algorithm for evaluation of Nand-based Boolean Circuits. The contribution of this paper is that the proposed algorithm has been implemented using only three molecular operations and the number of passes in each level is decreased to less than half of previously addressed in the literature. Thus, the proposed algorithm is much easier to implement in the laboratory.

  5. Hybrid organic semiconductor lasers for bio-molecular sensing.

    Science.gov (United States)

    Haughey, Anne-Marie; Foucher, Caroline; Guilhabert, Benoit; Kanibolotsky, Alexander L; Skabara, Peter J; Burley, Glenn; Dawson, Martin D; Laurand, Nicolas

    2014-01-01

    Bio-functionalised luminescent organic semiconductors are attractive for biophotonics because they can act as efficient laser materials while simultaneously interacting with molecules. In this paper, we present and discuss a laser biosensor platform that utilises a gain layer made of such an organic semiconductor material. The simple structure of the sensor and its operation principle are described. Nanolayer detection is shown experimentally and analysed theoretically in order to assess the potential and the limits of the biosensor. The advantage conferred by the organic semiconductor is explained, and comparisons to laser sensors using alternative dye-doped materials are made. Specific biomolecular sensing is demonstrated, and routes to functionalisation with nucleic acid probes, and future developments opened up by this achievement, are highlighted. Finally, attractive formats for sensing applications are mentioned, as well as colloidal quantum dots, which in the future could be used in conjunction with organic semiconductors.

  6. Biomolecular Assembly of Gold Nanocrystals

    Energy Technology Data Exchange (ETDEWEB)

    Micheel, Christine Marya [Univ. of California, Berkeley, CA (United States)

    2005-05-20

    Over the past ten years, methods have been developed to construct discrete nanostructures using nanocrystals and biomolecules. While these frequently consist of gold nanocrystals and DNA, semiconductor nanocrystals as well as antibodies and enzymes have also been used. One example of discrete nanostructures is dimers of gold nanocrystals linked together with complementary DNA. This type of nanostructure is also known as a nanocrystal molecule. Discrete nanostructures of this kind have a number of potential applications, from highly parallel self-assembly of electronics components and rapid read-out of DNA computations to biological imaging and a variety of bioassays. My research focused in three main areas. The first area, the refinement of electrophoresis as a purification and characterization method, included application of agarose gel electrophoresis to the purification of discrete gold nanocrystal/DNA conjugates and nanocrystal molecules, as well as development of a more detailed understanding of the hydrodynamic behavior of these materials in gels. The second area, the development of methods for quantitative analysis of transmission electron microscope data, used computer programs written to find pair correlations as well as higher order correlations. With these programs, it is possible to reliably locate and measure nanocrystal molecules in TEM images. The final area of research explored the use of DNA ligase in the formation of nanocrystal molecules. Synthesis of dimers of gold particles linked with a single strand of DNA possible through the use of DNA ligase opens the possibility for amplification of nanostructures in a manner similar to polymerase chain reaction. These three areas are discussed in the context of the work in the Alivisatos group, as well as the field as a whole.

  7. Application of Uncooled Monolithic Thermoelectric Linear Arrays to Imaging Radiometers

    Science.gov (United States)

    Kruse, Paul W.

    Introduction Identification of Incipient Failure of Railcar Wheels Technical Description of the Model IR 1000 Imaging Radiometer Performance of the Model IR 1000 Imaging Radiometer Initial Application Summary Imaging Radiometer for Predictive and Preventive Maintenance Description Operation Specifications Summary References INDEX CONTENTS OF VOLUMES IN THIS SERIES

  8. Hexabundles: imaging fiber arrays for low-light astronomical applications

    DEFF Research Database (Denmark)

    Bland-Hawthorn, Joss; Bryant, Julia; Robertson, Gordon;

    2011-01-01

    We demonstrate for the first time an imaging fibre bundle (“hexabundle”) that is suitable for low-light applications in astronomy. The most successful survey instruments at optical-infrared wavelengths today have obtained data on up to a million celestial sources using hundreds of multimode fibre...

  9. A light writable microfluidic "flash memory": optically addressed actuator array with latched operation for microfluidic applications.

    Science.gov (United States)

    Hua, Zhishan; Pal, Rohit; Srivannavit, Onnop; Burns, Mark A; Gulari, Erdogan

    2008-03-01

    This paper presents a novel optically addressed microactuator array (microfluidic "flash memory") with latched operation. Analogous to the address-data bus mediated memory address protocol in electronics, the microactuator array consists of individual phase-change based actuators addressed by localized heating through focused light patterns (address bus), which can be provided by a modified projector or high power laser pointer. A common pressure manifold (data bus) for the entire array is used to generate large deflections of the phase change actuators in the molten phase. The use of phase change material as the working media enables latched operation of the actuator array. After the initial light "writing" during which the phase is temporarily changed to molten, the actuated status is self-maintained by the solid phase of the actuator without power and pressure inputs. The microfluidic flash memory can be re-configured by a new light illumination pattern and common pressure signal. The proposed approach can achieve actuation of arbitrary units in a large-scale array without the need for complex external equipment such as solenoid valves and electrical modules, which leads to significantly simplified system implementation and compact system size. The proposed work therefore provides a flexible, energy-efficient, and low cost multiplexing solution for microfluidic applications based on physical displacements. As an example, the use of the latched microactuator array as "normally closed" or "normally open" microvalves is demonstrated. The phase-change wax is fully encapsulated and thus immune from contamination issues in fluidic environments.

  10. LEO resistant PI-B-PDMS block copolymer films for solar array applications

    NARCIS (Netherlands)

    Lonkhuyzen, H. van; Bongers, E.; Fischer, H.R.; Dingemans, T.J.; Semprimoschnig, C.

    2013-01-01

    Due to their low atomic oxygen erosion yields PI-b-PDMS block copolymer films have considerable potential for application onto space exposed surfaces of satellites in low earth orbit. On solar arrays these materials might be used as electrical electrical insulation film, flexprint outer layer, elect

  11. A 28 GHz FR-4 Compatible Phased Array Antenna for 5G Mobile Phone Applications

    DEFF Research Database (Denmark)

    Ojaroudiparchin, Naser; Shen, Ming; Pedersen, Gert F.

    2015-01-01

    The design of a 28 GHz phased array antenna for future fifth generation (5G) mobile-phone applications has been presented in this paper. The proposed antenna can be implemented using low cost FR-4 substrates, while maintaining good performance in terms of gain and efficiency. This is achieved...

  12. Applications of a Networked Array of Small Satellites for Planetary Observation

    NARCIS (Netherlands)

    Gunter, B.C.; Maessen, D.C.

    2010-01-01

    The goal of this study is to explore those applications which can best utilize a network of orbiting satellites working as a distributed computing array. The satellites are presumed to be low-cost mini- or micro-satellites orbiting Earth or some other celestial body (i.e., an asteroid, moon, etc.),

  13. Phased-Array Monolithic PEM for FT Spectrometry With Applications in Explosive Detection and CB Defense

    Science.gov (United States)

    2008-12-01

    1 PHASED-ARRAY MONOLITHIC PEM FOR FT SPECTROMETRY WITH APPLICATIONS IN EXPLOSIVE DETECTION AND CB DEFENSE Tudor N. Buican* Semiotic ...PERFORMING ORGANIZATION NAME(S) AND ADDRESS(ES) Semiotic Engineering Associates LLC Albuquerque, NM 87108 8. PERFORMING ORGANIZATION REPORT NUMBER 9

  14. Precise Calibration of a GNSS Antenna Array for Adaptive Beamforming Applications

    Directory of Open Access Journals (Sweden)

    Saeed Daneshmand

    2014-05-01

    Full Text Available The use of global navigation satellite system (GNSS antenna arrays for applications such as interference counter-measure, attitude determination and signal-to-noise ratio (SNR enhancement is attracting significant attention. However, precise antenna array calibration remains a major challenge. This paper proposes a new method for calibrating a GNSS antenna array using live signals and an inertial measurement unit (IMU. Moreover, a second method that employs the calibration results for the estimation of steering vectors is also proposed. These two methods are applied to the receiver in two modes, namely calibration and operation. In the calibration mode, a two-stage optimization for precise calibration is used; in the first stage, constant uncertainties are estimated while in the second stage, the dependency of each antenna element gain and phase patterns to the received signal direction of arrival (DOA is considered for refined calibration. In the operation mode, a low-complexity iterative and fast-converging method is applied to estimate the satellite signal steering vectors using the calibration results. This makes the technique suitable for real-time applications employing a precisely calibrated antenna array. The proposed calibration method is applied to GPS signals to verify its applicability and assess its performance. Furthermore, the data set is used to evaluate the proposed iterative method in the receiver operation mode for two different applications, namely attitude determination and SNR enhancement.

  15. Precise calibration of a GNSS antenna array for adaptive beamforming applications.

    Science.gov (United States)

    Daneshmand, Saeed; Sokhandan, Negin; Zaeri-Amirani, Mohammad; Lachapelle, Gérard

    2014-05-30

    The use of global navigation satellite system (GNSS) antenna arrays for applications such as interference counter-measure, attitude determination and signal-to-noise ratio (SNR) enhancement is attracting significant attention. However, precise antenna array calibration remains a major challenge. This paper proposes a new method for calibrating a GNSS antenna array using live signals and an inertial measurement unit (IMU). Moreover, a second method that employs the calibration results for the estimation of steering vectors is also proposed. These two methods are applied to the receiver in two modes, namely calibration and operation. In the calibration mode, a two-stage optimization for precise calibration is used; in the first stage, constant uncertainties are estimated while in the second stage, the dependency of each antenna element gain and phase patterns to the received signal direction of arrival (DOA) is considered for refined calibration. In the operation mode, a low-complexity iterative and fast-converging method is applied to estimate the satellite signal steering vectors using the calibration results. This makes the technique suitable for real-time applications employing a precisely calibrated antenna array. The proposed calibration method is applied to GPS signals to verify its applicability and assess its performance. Furthermore, the data set is used to evaluate the proposed iterative method in the receiver operation mode for two different applications, namely attitude determination and SNR enhancement.

  16. Application of a Halbach magnetic array for long-range cell and particle separations in biological samples

    Science.gov (United States)

    Kang, Joo H.; Driscoll, Harry; Super, Michael; Ingber, Donald E.

    2016-05-01

    Here, we describe a versatile application of a planar Halbach permanent magnet array for an efficient long-range magnetic separation of living cells and microparticles over distances up to 30 mm. A Halbach array was constructed from rectangular bar magnets using 3D-printed holders and compared to a conventional alternating array of identical magnets. We theoretically predicted the superiority of the Halbach array for a long-range magnetic separation and then experimentally validated that the Halbach configuration outperforms the alternating array for isolating magnetic microparticles or microparticle-bound bacterial cells at longer distances. Magnetophoretic velocities (ymag) of magnetic particles (7.9 μm diameter) induced by the Halbach array in a microfluidic device were significantly higher and extended over a larger area than those induced by the alternating magnet array (ymag = 178 versus 0 μm/s at 10 mm, respectively). When applied to 50 ml tubes (˜30 mm diameter), the Halbach array removed >95% of Staphylococcus aureus bacterial cells bound with 1 μm magnetic particles compared to ˜70% removed using the alternating array. In addition, the Halbach array enabled manipulation of 1 μm magnetic beads in a deep 96-well plate for ELISA applications, which was not possible with the conventional magnet arrays. Our analysis demonstrates the utility of the Halbach array for the future design of devices for high-throughput magnetic separations of cells, molecules, and toxins.

  17. Azurin for Biomolecular Electronics: a Reliability Study

    Science.gov (United States)

    Bramanti, Alessandro; Pompa, Pier Paolo; Maruccio, Giuseppe; Calabi, Franco; Arima, Valentina; Cingolani, Roberto; Corni, Stefano; Di Felice, Rosa; De Rienzo, Francesca; Rinaldi, Ross

    2005-09-01

    The metalloprotein azurin, used in biomolecular electronics, is investigated with respect to its resilience to high electric fields and ambient conditions, which are crucial reliability issues. Concerning the effect of electric fields, two models of different complexity agree indicating an unexpectedly high robustness. Experiments in device-like conditions confirm that no structural modifications occur, according to fluorescence spectra, even after a 40-min exposure to tens of MV/m. Ageing is then investigated experimentally, at ambient conditions and without field, over several days. Only a small conformational rearrangement is observed in the first tens of hours, followed by an equilibrium state.

  18. Nanotube-Based Chemical and Biomolecular Sensors

    Institute of Scientific and Technical Information of China (English)

    J.Koh; B.Kim; S.Hong; H.Lim; H.C.Choi

    2008-01-01

    We present a brief review about recent results regarding carbon nanotube (CNT)-based chemical and biomolecular sensors. For the fabrication of CNT-based sensors, devices containing CNT channels between two metal electrodes are first fabricated usually via chemical vapor deposition (CVD) process or "surface programmed assembly" method. Then, the CNT surfaces are often functionalized to enhance the selectivity of the sensors. Using this process, highly-sensitive CNT-based sensors can be fabricated for the selective detection of various chemical and biological molecules such as hydrogen, ammonia, carbon monoxide, chlorine gas, DNA, glucose, alcohol, and proteins.

  19. Scalable Molecular Dynamics for Large Biomolecular Systems

    Directory of Open Access Journals (Sweden)

    Robert K. Brunner

    2000-01-01

    Full Text Available We present an optimized parallelization scheme for molecular dynamics simulations of large biomolecular systems, implemented in the production-quality molecular dynamics program NAMD. With an object-based hybrid force and spatial decomposition scheme, and an aggressive measurement-based predictive load balancing framework, we have attained speeds and speedups that are much higher than any reported in literature so far. The paper first summarizes the broad methodology we are pursuing, and the basic parallelization scheme we used. It then describes the optimizations that were instrumental in increasing performance, and presents performance results on benchmark simulations.

  20. Fundamentos biomoleculares de la diabetes mellitus

    OpenAIRE

    2013-01-01

    La diabetes mellitus es una enfermedad endocrina con importantes implicaciones a nivel sistémico, como: angiopatía, neuropatía, retinopatía y nefropatía, entre otras. Estas  complicaciones tienen su origen en eventos biomoleculares desencadenados por la hiperglicemia.  La presente revisión de tema trata sobre la estructura y síntesis de la insulina en las células β del páncreas; los eventos moleculares y bioquímicos que activan su secreción como respuesta a una alta concentración de glucosa e...

  1. Feasibility of a multipurpose transceiver module for phased array radar and EW applications using RFIC technology

    Science.gov (United States)

    Al-Sarawi, Said; Hansen, Hedley; Zhu, Yingbo

    2007-12-01

    Phased array antennas have a large number of civilian and military applications. In this paper we briefly review common approaches to an integrated implementation of radar and electronic warfare digital phase array module and highlight features that are common to both of these applications. Then we discuss how the promising features of the radio frequency integrated circuit (RFIC)-based technology can be utilized in building a transceiver module that meets the requirements of both radar and electronic warfare applications with minimum number of external components. This is achieved by researching the pros and cons of the different receiver architectures and their performance from the targeted applications point of view. Then, we survey current RFIC technologies and highlight the pros and cons of these technologies and how they impact the performance of the discussed receiver architectures.

  2. Silicon Nanoridge Array Waveguides for Nonlinear and Sensing Applications

    CERN Document Server

    Puckett, Matthew W; Vallini, Felipe; Shahin, Shiva; Monifi, Faraz; Barrina, Peter N; Mehravar, Soroush; Kieu, Khanh; Fainman, Yeshaiahu

    2015-01-01

    We fabricate and characterize waveguides composed of closely spaced and longitudinally oriented silicon ridges etched into silicon-on-insulator wafers. Through both guided mode and bulk measurements, we demonstrate that the patterning of silicon waveguides on such a deeply subwavelength scale is desirable for nonlinear and sensing applications alike. The proposed waveguide geometry simultaneously exhibits comparable propagation loss to similar schemes proposed in literature, an enhanced effective third-order nonlinear susceptibility, and high sensitivity to perturbations in its environment.

  3. Energy dissipation in biomolecular machines

    Energy Technology Data Exchange (ETDEWEB)

    Lervik, Anders

    2012-07-01

    The operation of a molecular pump, the calcium pump of sarcoplasmic reticulum is studied using mesoscopic non-equilibrium thermodynamics and molecular dynamics. The mesoscopic non-equilibrium thermodynamic description of the pump is compared to the description obtained in the framework of Hill for kinetic enzyme cycles. By comparing these two descriptions at isothermal conditions, they are found to be equivalent. This supports the validity of the mesoscopic approach. An extension of the mesoscopic non-equilibrium framework to also include a heat flux and the corresponding temperature difference is proposed. This can be used to model phenomena such as non-shivering thermogenesis, a process which lack a theoretical description in the kinetic cycle picture. Further, the heat transfer in the calcium pump is studied using molecular dynamics. This is done in order to obtain phenomenological parameters that can be used for the modeling of thermogenesis. A non-stationary non-equilibrium molecular dynamics approach is developed, which may be used to study heat transfer between a small object and the surrounding solvent. This methodology is applied to the calcium pump solvated in water. It is found that the thermal conductivity of the protein is low (0.2 W K-1 m-1) compared to water (0.6 WK-1 m-1). This means that the protein may sustain a large temperature gradient across its structure. The simulations also show that the protein-water surface is important for the heat transfer. The time scale for vibrational energy relaxation is found to be of order 10/100 ps which strengthens the local equilibrium assumption of mesoscopic non-equilibrium thermodynamics. Mesoscopic non-equilibrium thermodynamics is also applied to calculate the thermodynamic efficiency of the calcium pump embedded in lipid bilayers of varying length and from different tissues. This is done in order to show the applicability of mesoscopic non-equilibrium thermodynamics to interpret experimental data. The

  4. Systematic evaluation of bundled SPC water for biomolecular simulations.

    Science.gov (United States)

    Gopal, Srinivasa M; Kuhn, Alexander B; Schäfer, Lars V

    2015-04-07

    molecules between the active site and the bulk. Our results form a basis for assessing the accuracy that can be expected from bundled SPC water models. At the same time, this study also highlights the importance of evaluating beforehand the effects of water bundling on the biomolecular system of interest for a particular multiscale simulation application.

  5. Application of a circular 2D hard-sphere microphone array for higher-order Ambisonics auralization

    DEFF Research Database (Denmark)

    Weller, Tobias; Favrot, Sylvain Emmanuel; Buchholz, Jörg

    2011-01-01

    A circular microphone array mounted on a rigid sphere was realized and its application to higherorder Ambisonics (HOA) auralization was analysed. Besides the 2D Ambisonics application this array design provides a promising basis for the development of a mixed-order Ambisonics recording system...

  6. Development of macropore arrays in silicon and related technologies for X-ray imaging applications

    OpenAIRE

    Badel, Xavier

    2003-01-01

    Digital devices have started to replace photographic film inX-ray imaging applications. As compared to photographic films,these devices are more convenient to obtain images and tohandle, treat and store these images. The goal of the presentstudy is to develop macropore arrays and related silicontechnologies in order to fabricate X-ray imaging detectors formedical applications, and in particular for dentistry. Althougha few detectors are already available on the market, theirperformances, such...

  7. HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data

    Directory of Open Access Journals (Sweden)

    Wouters Bas J

    2010-05-01

    Full Text Available Abstract Background Tiling-arrays are applicable to multiple types of biological research questions. Due to its advantages (high sensitivity, resolution, unbiased, the technology is often employed in genome-wide investigations. A major challenge in the analysis of tiling-array data is to define regions-of-interest, i.e., contiguous probes with increased signal intensity (as a result of hybridization of labeled DNA in a region. Currently, no standard criteria are available to define these regions-of-interest as there is no single probe intensity cut-off level, different regions-of-interest can contain various numbers of probes, and can vary in genomic width. Furthermore, the chromosomal distance between neighboring probes can vary across the genome among different arrays. Results We have developed Hypergeometric Analysis of Tiling-arrays (HAT, and first evaluated its performance for tiling-array datasets from a Chromatin Immunoprecipitation study on chip (ChIP-on-chip for the identification of genome-wide DNA binding profiles of transcription factor Cebpa (used for method comparison. Using this assay, we can refine the detection of regions-of-interest by illustrating that regions detected by HAT are more highly enriched for expected motifs in comparison with an alternative detection method (MAT. Subsequently, data from a retroviral insertional mutagenesis screen were used to examine the performance of HAT among different applications of tiling-array datasets. In both studies, detected regions-of-interest have been validated with (qPCR. Conclusions We demonstrate that HAT has increased specificity for analysis of tiling-array data in comparison with the alternative method, and that it accurately detects regions-of-interest in two different applications of tiling-arrays. HAT has several advantages over previous methods: i as there is no single cut-off level for probe-intensity, HAT can detect regions-of-interest at various thresholds, ii it can

  8. Multiplexed optical operation of nanoelectromechanical systems (NEMS) arrays for sensing and signal-processing applications

    Science.gov (United States)

    Sampathkumar, Ashwin

    2014-06-01

    NEMS are rapidly being developed for a variety of sensing applications as well as for exploring interesting regimes in fundamental physics. In most of these endeavors, operation of a NEMS device involves actuating the device harmonically around its fundamental resonance and detecting subsequent motion while the device interacts with its environment. Even though a single NEMS resonator is exceptionally sensitive, a typical application, such as sensing or signal processing, requires the detection of signals from many resonators distributed over the surface of a chip. Therefore, one of the key technological challenges in the field of NEMS is development of multiplexed measurement techniques to detect the motion of a large number of NEMS resonators simultaneously. In this work, we address the important and difficult problem of interfacing with a large number of NEMS devices and facilitating the use of such arrays in, for example, sensing and signal processing applications. We report a versatile, all-optical technique to excite and read-out a distributed NEMS array. The NEMS array is driven by a distributed, intensity-modulated, optical pump through the photothermal effect. The ensuing vibrational response of the array is multiplexed onto a single, probe beam as a high-frequency phase modulation. The phase modulation is optically down converted to a low-frequency, intensity modulation using an adaptive full -field interferometer, and subsequently is detected using a charge-coupled device (CCD) array. Rapid and single-step mechanical characterization of approximately 60 nominally identical, high-frequency resonators is demonstrated. The technique may enable sensitivity improvements over single NEMS resonators by averaging signals coming from a multitude of devices in the array. In addition, the diffraction-limited spatial resolution may allow for position-dependent read-out of NEMS sensor chips for sensing multiple analytes or spatially inhomogeneous forces.

  9. Laser fabrication of large-scale nanoparticle arrays for sensing applications.

    Science.gov (United States)

    Kuznetsov, Arseniy I; Evlyukhin, Andrey B; Gonçalves, Manuel R; Reinhardt, Carsten; Koroleva, Anastasia; Arnedillo, Maria Luisa; Kiyan, Roman; Marti, Othmar; Chichkov, Boris N

    2011-06-28

    A novel method for high-speed fabrication of large scale periodic arrays of nanoparticles (diameters 40-200 nm) is developed. This method is based on a combination of nanosphere lithography and laser-induced transfer. Fabricated spherical nanoparticles are partially embedded into a polymer substrate. They are arranged into a hexagonal array and can be used for sensing applications. An optical sensor with the sensitivity of 365 nm/RIU and the figure of merit of 21.5 in the visible spectral range is demonstrated.

  10. Bandwidth enhancement using Polymeric Grid Array Antenna for millimeter-wave application

    Science.gov (United States)

    Muhamad, Wan Asilah Wan; Ngah, Razali; Jamlos, Mohd Faizal; Soh, Ping Jack; Ali, Mohd Tarmizi

    2017-01-01

    A new grid array antenna designed on a polymeric polydimethylsiloxane (PDMS) substrate is presented. A good relative permittivity of the PDMS substrate increases the antenna bandwidth. The PDMS surface is also hardened to protect the proposed grid array antenna's radiating element. A SMA coaxial connector is used to feed the 36 × 35 mm2 antenna from its bottom. A bandwidth enhancement of 72.1% is obtained compared to conventional antenna. Besides, its efficiency is increased up to 70%. The simulated and measured results agreed well and the proposed antenna is validated to suit millimeter-wave applications.

  11. Improvements in continuum modeling for biomolecular systems

    Science.gov (United States)

    Yu, Qiao; Ben-Zhuo, Lu

    2016-01-01

    Modeling of biomolecular systems plays an essential role in understanding biological processes, such as ionic flow across channels, protein modification or interaction, and cell signaling. The continuum model described by the Poisson- Boltzmann (PB)/Poisson-Nernst-Planck (PNP) equations has made great contributions towards simulation of these processes. However, the model has shortcomings in its commonly used form and cannot capture (or cannot accurately capture) some important physical properties of the biological systems. Considerable efforts have been made to improve the continuum model to account for discrete particle interactions and to make progress in numerical methods to provide accurate and efficient simulations. This review will summarize recent main improvements in continuum modeling for biomolecular systems, with focus on the size-modified models, the coupling of the classical density functional theory and the PNP equations, the coupling of polar and nonpolar interactions, and numerical progress. Project supported by the National Natural Science Foundation of China (Grant No. 91230106) and the Chinese Academy of Sciences Program for Cross & Cooperative Team of the Science & Technology Innovation.

  12. Hexabundles: imaging fiber arrays for low-light astronomical applications.

    Science.gov (United States)

    Bland-Hawthorn, Joss; Bryant, Julia; Robertson, Gordon; Gillingham, Peter; O'Byrne, John; Cecil, Gerald; Haynes, Roger; Croom, Scott; Ellis, Simon; Maack, Martin; Skovgaard, Peter; Noordegraaf, Danny

    2011-01-31

    We demonstrate a novel imaging fiber bundle ("hexabundle") that is suitable for low-light applications in astronomy. The most successful survey instruments at optical-infrared wavelengths use hundreds to thousands of multimode fibers fed to one or more spectrographs. Since most celestial sources are spatially extended on the celestial sphere, a hexabundle provides spectroscopic information at many distinct locations across the source. We discuss two varieties of hexabundles: (i) lightly fused, closely packed, circular cores; (ii) heavily fused non-circular cores with higher fill fractions. In both cases, we find the important result that the cladding can be reduced to ~2 μm over the short fuse length, well below the conventional ~10λ thickness employed more generally, with a consequent gain in fill factor. Over the coming decade, it is to be expected that fiber-based instruments will be upgraded with hexabundles in order to increase the spatial multiplex capability by two or more orders of magnitude.

  13. Hexabundles: imaging fibre arrays for low-light astronomical applications

    DEFF Research Database (Denmark)

    Bland-Hawthorn, Joss; Bryant, Julie; Robertson, Gordon

    2010-01-01

    We demonstrate for the first time an imaging fibre bundle (“hexabundle”) that is suitable for low-light applications in astronomy. The most successful survey instruments at optical-infrared wavelengths today have obtained data on up to a million celestial sources using hundreds of multimode fibres...... at a time fed to multiple spectrographs. But a large fraction of these sources are spatially extended on the celestial sphere such that a hexabundle would be able to provide spectroscopic information at many distinct locations across the source. Our goal is to upgrade single-fibre survey instruments...... with multimode hexabundles in place of the multimode fibres. We discuss two varieties of hexabundles: (i) closely packed circular cores allowing the covering fraction to approach the theoretical maximum of 91%; (ii) fused noncircular cores where the interstitial holes have been removed and the covering fraction...

  14. Quantitative characterization of biomolecular assemblies and interactions using atomic force microscopy.

    Science.gov (United States)

    Yang, Yong; Wang, Hong; Erie, Dorothy A

    2003-02-01

    Atomic force microscopy (AFM) has been applied in many biological investigations in the past 15 years. This review focuses on the application of AFM for quantitatively characterizing the structural and thermodynamic properties of protein-protein and protein-nucleic acid complexes. AFM can be used to determine the stoichiometries and association constants of multiprotein assemblies and to quantify changes in conformations of proteins and protein-nucleic acid complexes. In addition, AFM in solution permits the observation of the dynamic properties of biomolecular complexes and the measurement of intermolecular forces between biomolecules. Recent advances in cryogenic AFM, AFM on two-dimensional crystals, carbon nanotube probes, solution imaging, high-speed AFM, and manipulation capabilities enhance these applications by improving AFM resolution and the dynamic and operative capabilities of the AFM. These developments make AFM a powerful tool for investigating the biomolecular assemblies and interactions that govern gene regulation.

  15. Microelectrode Arrays with Overlapped Diffusion Layers as Electroanalytical Detectors: Theory and Basic Applications

    Directory of Open Access Journals (Sweden)

    Peter Tomčík

    2013-10-01

    Full Text Available This contribution contains a survey of basic literature dealing with arrays of microelectrodes with overlapping diffusion layers as prospective tools in contemporary electrochemistry. Photolithographic thin layer technology allows the fabrication of sensors of micrometric dimensions separated with a very small gap. This fact allows the diffusion layers of single microelectrodes to overlap as members of the array. Various basic types of microelectrode arrays with interacting diffusion layers are described and their analytical abilities are accented. Theoretical approaches to diffusion layer overlapping and the consequences of close constitution effects such as collection efficiency and redox cycling are discussed. Examples of basis applications in electroanalytical chemistry such as amperometric detectors in HPLC and substitutional stripping voltammetry are also given.

  16. Recent Advances in Genetic Technique of Microbial Report Cells and Their Applications in Cell Arrays

    Directory of Open Access Journals (Sweden)

    Do Hyun Kim

    2015-01-01

    Full Text Available Microbial cell arrays have attracted consistent attention for their ability to provide unique global data on target analytes at low cost, their capacity for readily detectable and robust cell growth in diverse environments, their high degree of convenience, and their capacity for multiplexing via incorporation of molecularly tailored reporter cells. To highlight recent progress in the field of microbial cell arrays, this review discusses research on genetic engineering of reporter cells, technologies for patterning live cells on solid surfaces, cellular immobilization in different polymers, and studies on their application in environmental monitoring, disease diagnostics, and other related fields. On the basis of these results, we discuss current challenges and future prospects for novel microbial cell arrays, which show promise for use as potent tools for unraveling complex biological processes.

  17. Microelectrode arrays with overlapped diffusion layers as electroanalytical detectors: theory and basic applications.

    Science.gov (United States)

    Tomčík, Peter

    2013-10-11

    This contribution contains a survey of basic literature dealing with arrays of microelectrodes with overlapping diffusion layers as prospective tools in contemporary electrochemistry. Photolithographic thin layer technology allows the fabrication of sensors of micrometric dimensions separated with a very small gap. This fact allows the diffusion layers of single microelectrodes to overlap as members of the array. Various basic types of microelectrode arrays with interacting diffusion layers are described and their analytical abilities are accented. Theoretical approaches to diffusion layer overlapping and the consequences of close constitution effects such as collection efficiency and redox cycling are discussed. Examples of basis applications in electroanalytical chemistry such as amperometric detectors in HPLC and substitutional stripping voltammetry are also given.

  18. Graphical Environment Tools for Application to Gamma-Ray Energy Tracking Arrays

    Energy Technology Data Exchange (ETDEWEB)

    Todd, Richard A. [RIS Corp.; Radford, David C. [ORNL Physics Div.

    2013-12-30

    Highly segmented, position-sensitive germanium detector systems are being developed for nuclear physics research where traditional electronic signal processing with mixed analog and digital function blocks would be enormously complex and costly. Future systems will be constructed using pipelined processing of high-speed digitized signals as is done in the telecommunications industry. Techniques which provide rapid algorithm and system development for future systems are desirable. This project has used digital signal processing concepts and existing graphical system design tools to develop a set of re-usable modular functions and libraries targeted for the nuclear physics community. Researchers working with complex nuclear detector arrays such as the Gamma-Ray Energy Tracking Array (GRETA) have been able to construct advanced data processing algorithms for implementation in field programmable gate arrays (FPGAs) through application of these library functions using intuitive graphical interfaces.

  19. Bandwidth enhancement of a multilayered polymeric comb array antenna for millimeter-wave applications

    Science.gov (United States)

    Muhamad, Wan Asilah Wan; Ngah, Razali; Jamlos, Mohd Faizal; Soh, Ping Jack; Ali, Mohd Tarmizi; Narbudowicz, Adam

    2017-01-01

    This paper introduces a new multilayered polymeric comb array antenna fabricated on a polydimethylsiloxane (PDMS) dielectric substrate. PDMS is selected due to its excellent electrical and mechanical properties such as low permittivity, water resistance and robustness. The polymeric comb array antenna consists of a zigzag array aligned at -90° with respect to the radiating patch with full ground plane. The radiating patch is embedded inside the PDMS substrate while the coaxial connector is located at the bottom of the transmission line. The proposed antenna functions from 22.649 to 27.792 GHz. Simulated and measured reflection coefficients and radiation patterns agreed well. A maximum gain of 9.856 dB is recorded at 25 GHz, indicating suitability for implementation in millimeter-wave applications.

  20. Development of Microfabricated Chemical Gas Sensors and Sensor Arrays for Aerospace Applications

    Science.gov (United States)

    Hunter, G. W.; Neudeck, P. G.; Fralick, G.; Thomas, V.; Liu, C. C.; Wu, W. H.; Ward, B.; Makel, D.

    2002-01-01

    Aerospace applications require the development of chemical sensors with capabilities beyond those of commercially available sensors. In particular, factors such as minimal sensor size, weight, and power consumption are particularly important. Development areas which have potential aerospace applications include launch vehicle leak detection, engine health monitoring, fire detection, and environmental monitoring. Sensor development for these applications is based on progress in three types of technology: 1) Micromachining and microfabrication (Microsystem) technology to fabricate miniaturized sensors. 2) The use of nanocrystalline materials to develop sensors with improved stability combined with higher sensitivity. 3) The development of high temperature semiconductors, especially silicon carbide. However, due to issues of selectivity and cross-sensitivity, individual sensors are limited in the amount of information that they can provide in environments that contain multiple chemical species. Thus, sensor arrays are being developed to address detection needs in such multi-species environments. This paper discusses the needs of space applications as well as the point-contact sensor technology and sensor arrays being developed to address these needs. Sensors to measure hydrogen, hydrocarbons, hydrazine, nitrogen oxides (NO,), carbon monoxide, oxygen, and carbon dioxide are being developed as well as arrays for leak, fire, and emissions detection. Demonstrations of the technology will also be discussed. It is concluded that microfabricated sensor technology has significant potential for use in a range of aerospace applications.

  1. Electrochemical sensor for multiplex screening of genetically modified DNA: identification of biotech crops by logic-based biomolecular analysis.

    Science.gov (United States)

    Liao, Wei-Ching; Chuang, Min-Chieh; Ho, Ja-An Annie

    2013-12-15

    Genetically modified (GM) technique, one of the modern biomolecular engineering technologies, has been deemed as profitable strategy to fight against global starvation. Yet rapid and reliable analytical method is deficient to evaluate the quality and potential risk of such resulting GM products. We herein present a biomolecular analytical system constructed with distinct biochemical activities to expedite the computational detection of genetically modified organisms (GMOs). The computational mechanism provides an alternative to the complex procedures commonly involved in the screening of GMOs. Given that the bioanalytical system is capable of processing promoter, coding and species genes, affirmative interpretations succeed to identify specified GM event in terms of both electrochemical and optical fashions. The biomolecular computational assay exhibits detection capability of genetically modified DNA below sub-nanomolar level and is found interference-free by abundant coexistence of non-GM DNA. This bioanalytical system, furthermore, sophisticates in array fashion operating multiplex screening against variable GM events. Such a biomolecular computational assay and biosensor holds great promise for rapid, cost-effective, and high-fidelity screening of GMO.

  2. Application of unified array calculus to connect 4-D spacetime sensing with string theory and relativity

    Science.gov (United States)

    Rauhala, U. A.

    2013-12-01

    Array algebra of photogrammetry and geodesy unified multi-linear matrix and tensor operators in an expansion of Gaussian adjustment calculus to general matrix inverses and solutions of inverse problems to find all, or some optimal, parametric solutions that satisfy the available observables. By-products in expanding array and tensor calculus to handle redundant observables resulted in general theories of estimation in mathematical statistics and fast transform technology of signal processing. Their applications in gravity modeling and system automation of multi-ray digital image and terrain matching evolved into fast multi-nonlinear differential and integral array calculus. Work since 1980's also uncovered closed-form inverse Taylor and least squares Newton-Raphson-Gauss perturbation solutions of nonlinear systems of equations. Fast nonlinear integral matching of array wavelets enabled an expansion of the bundle adjustment to 4-D stereo imaging and range sensing where real-time stereo sequence and waveform phase matching enabled data-to-info conversion and compression on-board advanced sensors. The resulting unified array calculus of spacetime sensing is applicable in virtually any math and engineering science, including recent work in spacetime physics. The paper focuses on geometric spacetime reconstruction from its image projections inspired by unified relativity and string theories. The collinear imaging equations of active object space shutter of special relativity are expanded to 4-D Lorentz transform. However, regular passive imaging and shutter inside the sensor expands the law of special relativity by a quantum geometric explanation of 4-D photogrammetry. The collinear imaging equations provide common sense explanations to the 10 (and 26) dimensional hyperspace concepts of a purely geometric string theory. The 11-D geometric M-theory is interpreted as a bundle adjustment of spacetime images using 2-D or 5-D membrane observables of image, string and

  3. Reliability models applicable to space telescope solar array assembly system

    Science.gov (United States)

    Patil, S. A.

    1986-01-01

    A complex system may consist of a number of subsystems with several components in series, parallel, or combination of both series and parallel. In order to predict how well the system will perform, it is necessary to know the reliabilities of the subsystems and the reliability of the whole system. The objective of the present study is to develop mathematical models of the reliability which are applicable to complex systems. The models are determined by assuming k failures out of n components in a subsystem. By taking k = 1 and k = n, these models reduce to parallel and series models; hence, the models can be specialized to parallel, series combination systems. The models are developed by assuming the failure rates of the components as functions of time and as such, can be applied to processes with or without aging effects. The reliability models are further specialized to Space Telescope Solar Arrray (STSA) System. The STSA consists of 20 identical solar panel assemblies (SPA's). The reliabilities of the SPA's are determined by the reliabilities of solar cell strings, interconnects, and diodes. The estimates of the reliability of the system for one to five years are calculated by using the reliability estimates of solar cells and interconnects given n ESA documents. Aging effects in relation to breaks in interconnects are discussed.

  4. A NEW FABRICATION PROCESS FOR A FLEXIBLE SKIN WITH TEMPERATURE SENSOR ARRAY AND ITS APPLICATIONS

    Institute of Scientific and Technical Information of China (English)

    LEE Gwo-Bin; HUANG Fu-Chun; Lee Chia-Yen; Mian Jiun-Jih

    2004-01-01

    This paper reports a novel technique for fabrication of a flexible skin with a temperature sensor array (40 × 1 sensors). A simplified MEMS technology using platinum resistors as sensing materials, which are sandwiched between two polyimide layers as flexible substrates is developed. The two polyimide layers are deposited on top of a thin aluminum layer, which serves as a sacrificial layer such that the flexible skin can be released by metal etching and peeled off easily. The flexible skin with a temperature sensor array has a high mechanical flexibility and can be handily attached on a highly curved surface to detect tiny temperature distribution inside a small area. The sensor array shows a linear output and has a sensitivity of 7.SmV/℃ (prior to amplifiers) at a drive current of 1 mA. To demonstrate its applications, two examples have been demonstrated, including measurement of temperature distribution around a micro heater of a micro PCR (polymerase chain reaction) chip for DNA amplification and detection of separation point for flow over a circular cylinder. The development of the flexible skin with a temperature sensor array may be crucial for measuring temperature distribution on any curved surface in the fields of aerodynamics, space exploration, auto making and biomedical applications etc.

  5. A Compact Two-Level Sequentially Rotated Circularly Polarized Antenna Array for C-Band Applications

    Directory of Open Access Journals (Sweden)

    Stefano Maddio

    2015-01-01

    Full Text Available A compact circular polarized antenna array with a convenient gain/bandwidth/dimension trade-off is proposed for applications in the C-band. The design is based on the recursive application of the sequential phase architecture, resulting in a 4 × 4 array of closely packed identical antennas. The 16 antenna elements are disc-based patches operating in modal degeneration, tuned to exhibit a broad while imperfect polarization. Exploiting the compact dimension of the patches and a space-filling design for the feeding network, the entire array is designed to minimize the occupied area. A prototype of the proposed array is fabricated with standard photoetching procedure in a single-layer via less printed board of overall area 80 × 80 mm2. Adequate left-hand polarization is observed over a wide bandwidth, demonstrating a convenient trade-off between bandwidth and axial ratio. Satisfying experimental results validate the proposed design, with a peak gain of 12.6 dB at 6.7 GHz maintained within 3 dB for 1 GHz, a very wide 10 dB return loss bandwidth of 3 GHz, and a 4 dB axial ratio bandwidth of 1.82 GHz, meaning 31% of fractional bandwidth.

  6. The design and application of large area intensive lens array focal spots measurement system

    Science.gov (United States)

    Chen, Bingzhen; Yao, Shun; Yang, Guanghui; Dai, Mingchong; Wang, Zhiyong

    2014-12-01

    Concentrating Photovoltaic (CPV) modules are getting thinner and using smaller cells now days. Correspondingly, large area intensive lens arrays with smaller unit dimension and shorter focal length are wanted. However, the size and power center of lens array focal spots usually differ from the design value and are hard to measure, especially under large area situation. It is because the machining error and deformation of material of the lens array are hard to simulate in the optical design process. Thus the alignment error between solar cells and focal spots in the module assembly process will be hard to control. Under this kind of situation, the efficiency of CPV module with thinner body and smaller cells is much lower than expected. In this paper, a design of large area lens array focal spots automatic measurement system is presented, as well as its prototype application results. In this system, a four-channel parallel light path and its corresponding image capture and process modules are designed. These modules can simulate focal spots under sunlight and have the spots image captured and processed using charge coupled devices and certain gray level algorithm. Thus the important information of focal spots such as spot size and location will be exported. Motion control module based on grating scale signal and interval measurement method are also employed in this system in order to get test results with high speed and high precision on large area lens array no less than 1m×0.8m. The repeatability of the system prototype measurement is +/-10μm with a velocity of 90 spot/min. Compared to the original module assembled using coordinates from optical design, modules assembled using data exported from the prototype is 18% higher in output power, reaching a conversion efficiency of over 31%. This system and its design can be used in the focal spot measurement of planoconvex lens array and Fresnel lens array, as well as other kinds of large area lens array application

  7. Stochastic Simulation of Biomolecular Reaction Networks Using the Biomolecular Network Simulator Software

    Science.gov (United States)

    2008-02-01

    investigate the simulation of a biomolecular reaction network with BNS, a simple model of a generic self-assembling catalytic ligation reaction in a...Amino Acid Pools Nucleotide Triphosphate Pools Nucleotide Monophosphate Pools Ligation Reaction 1551 517 7 RESULTS Simulation of exemplar...and reaction r8 is the catalytic ligation reaction . In figures 5(B) through 5(F), both the time-averaged event rate for a single simulation run

  8. DESIGN OF HYBRID COUPLER CONNECTED SQUARE ARRAY PATCH ANTENNA FOR Wi-Fi APPLICATIONS

    Directory of Open Access Journals (Sweden)

    A. Sahaya Anselin Nisha

    2012-01-01

    Full Text Available Microstrip patch antennas being popular because of light weight, low volume, thin profile configuration which can be made conformal. Wireless communication systems applications circular polarization antenna is placing vital role. In this study we introduce a new technique to produce circular polarization. Hybrid coupler is directly connected to microstrip antenna to get circular polarization. Also gain is further increased by introducing antenna array technique. Each square in array having length of 4.6mm patch is having thickness of 0.381mm and the dielectric material used FR4. The designed antenna having high gain of 6.26dB and directivity of 5.11dB at the resonant frequency of 3.7GHz. Simulation results shows that the designed antenna characteristic is suitable for Wi-Fi applications.

  9. Highly uniform and vertically aligned SnO2 nanochannel arrays for photovoltaic applications

    Science.gov (United States)

    Kim, Jae-Yup; Kang, Jin Soo; Shin, Junyoung; Kim, Jin; Han, Seung-Joo; Park, Jongwoo; Min, Yo-Sep; Ko, Min Jae; Sung, Yung-Eun

    2015-04-01

    Nanostructured electrodes with vertical alignment have been considered ideal structures for electron transport and interfacial contact with redox electrolytes in photovoltaic devices. Here, we report large-scale vertically aligned SnO2 nanochannel arrays with uniform structures, without lateral cracks fabricated by a modified anodic oxidation process. In the modified process, ultrasonication is utilized to avoid formation of partial compact layers and lateral cracks in the SnO2 nanochannel arrays. Building on this breakthrough, we first demonstrate the photovoltaic application of these vertically aligned SnO2 nanochannel arrays. These vertically aligned arrays were directly and successfully applied in quasi-solid state dye-sensitized solar cells (DSSCs) as photoanodes, yielding reasonable conversion efficiency under back-side illumination. In addition, a significantly short process time (330 s) for achieving the optimal thickness (7.0 μm) and direct utilization of the anodized electrodes enable a simple, rapid and low-cost fabrication process. Furthermore, a TiO2 shell layer was coated on the SnO2 nanochannel arrays by the atomic layer deposition (ALD) process for enhancement of dye-loading and prolonging the electron lifetime in the DSSC. Owing to the presence of the ALD TiO2 layer, the short-circuit photocurrent density (Jsc) and conversion efficiency were increased by 20% and 19%, respectively, compared to those of the DSSC without the ALD TiO2 layer. This study provides valuable insight into the development of efficient SnO2-based photoanodes for photovoltaic application by a simple and rapid fabrication process.Nanostructured electrodes with vertical alignment have been considered ideal structures for electron transport and interfacial contact with redox electrolytes in photovoltaic devices. Here, we report large-scale vertically aligned SnO2 nanochannel arrays with uniform structures, without lateral cracks fabricated by a modified anodic oxidation process

  10. Biomolecular Markers in Cancer of the Tongue

    Directory of Open Access Journals (Sweden)

    Daris Ferrari

    2009-01-01

    Full Text Available The incidence of tongue cancer is increasing worldwide, and its aggressiveness remains high regardless of treatment. Genetic changes and the expression of abnormal proteins have been frequently reported in the case of head and neck cancers, but the little information that has been published concerning tongue tumours is often contradictory. This review will concentrate on the immunohistochemical expression of biomolecular markers and their relationships with clinical behaviour and prognosis. Most of these proteins are associated with nodal stage, tumour progression and metastases, but there is still controversy concerning their impact on disease-free and overall survival, and treatment response. More extensive clinical studies are needed to identify the patterns of molecular alterations and the most reliable predictors in order to develop tailored anti-tumour strategies based on the targeting of hypoxia markers, vascular and lymphangiogenic factors, epidermal growth factor receptors, intracytoplasmatic signalling and apoptosis.

  11. Nonequilibrium phase transitions in biomolecular signal transduction

    Science.gov (United States)

    Smith, Eric; Krishnamurthy, Supriya; Fontana, Walter; Krakauer, David

    2011-11-01

    We study a mechanism for reliable switching in biomolecular signal-transduction cascades. Steady bistable states are created by system-size cooperative effects in populations of proteins, in spite of the fact that the phosphorylation-state transitions of any molecule, by means of which the switch is implemented, are highly stochastic. The emergence of switching is a nonequilibrium phase transition in an energetically driven, dissipative system described by a master equation. We use operator and functional integral methods from reaction-diffusion theory to solve for the phase structure, noise spectrum, and escape trajectories and first-passage times of a class of minimal models of switches, showing how all critical properties for switch behavior can be computed within a unified framework.

  12. Fundamentos biomoleculares de la diabetes mellitus

    Directory of Open Access Journals (Sweden)

    Katiana Mendoza

    2013-12-01

    Full Text Available La diabetes mellitus es una enfermedad endocrina con importantes implicaciones a nivel sistémico, como: angiopatía, neuropatía, retinopatía y nefropatía, entre otras. Estas  complicaciones tienen su origen en eventos biomoleculares desencadenados por la hiperglicemia.  La presente revisión de tema trata sobre la estructura y síntesis de la insulina en las células β del páncreas; los eventos moleculares y bioquímicos que activan su secreción como respuesta a una alta concentración de glucosa en sangre; la cascada de señalización generada por la unión de la insulina a su receptor sobre células diana; y las alteraciones metabólicas que los diferentes tipos de diabetes mellitus producen.

  13. Imaging and chemical surface analysis of biomolecular functionalization of monolithically integrated on silicon Mach-Zehnder interferometric immunosensors

    Science.gov (United States)

    Gajos, Katarzyna; Angelopoulou, Michailia; Petrou, Panagiota; Awsiuk, Kamil; Kakabakos, Sotirios; Haasnoot, Willem; Bernasik, Andrzej; Rysz, Jakub; Marzec, Mateusz M.; Misiakos, Konstantinos; Raptis, Ioannis; Budkowski, Andrzej

    2016-11-01

    Time-of-flight secondary ion mass spectrometry (imaging, micro-analysis) has been employed to evaluate biofunctionalization of the sensing arm areas of Mach-Zehnder interferometers monolithically integrated on silicon chips for the immunochemical (competitive) detection of bovine κ-casein in goat milk. Biosensor surfaces are examined after: modification with (3-aminopropyl)triethoxysilane, application of multiple overlapping spots of κ-casein solutions, blocking with 100-times diluted goat milk, and reaction with monoclonal mouse anti-κ-casein antibodies in blocking solution. The areas spotted with κ-casein solutions of different concentrations are examined and optimum concentration providing homogeneous coverage is determined. Coverage of biosensor surfaces with biomolecules after each of the sequential steps employed in immunodetection is also evaluated with TOF-SIMS, supplemented by Atomic force microscopy and X-ray photoelectron spectroscopy. Uniform molecular distributions are observed on the sensing arm areas after spotting with optimum κ-casein concentration, blocking and immunoreaction. The corresponding biomolecular compositions are determined with a Principal Component Analysis that distinguished between protein amino acids and milk glycerides, as well as between amino acids characteristic for Mabs and κ-casein, respectively. Use of the optimum conditions (κ-casein concentration) for functionalization of chips with arrays of ten Mach-Zehnder interferometers provided on-chips assays with dramatically improved both intra-chip response repeatability and assay detection sensitivity.

  14. Specificity quantification of biomolecular recognition and its implication for drug discovery

    Science.gov (United States)

    Yan, Zhiqiang; Wang, Jin

    2012-03-01

    Highly efficient and specific biomolecular recognition requires both affinity and specificity. Previous quantitative descriptions of biomolecular recognition were mostly driven by improving the affinity prediction, but lack of quantification of specificity. We developed a novel method SPA (SPecificity and Affinity) based on our funneled energy landscape theory. The strategy is to simultaneously optimize the quantified specificity of the ``native'' protein-ligand complex discriminating against ``non-native'' binding modes and the affinity prediction. The benchmark testing of SPA shows the best performance against 16 other popular scoring functions in industry and academia on both prediction of binding affinity and ``native'' binding pose. For the target COX-2 of nonsteroidal anti-inflammatory drugs, SPA successfully discriminates the drugs from the diversity set, and the selective drugs from non-selective drugs. The remarkable performance demonstrates that SPA has significant potential applications in identifying lead compounds for drug discovery.

  15. High-performance SPAD array detectors for parallel photon timing applications

    Science.gov (United States)

    Rech, I.; Cuccato, A.; Antonioli, S.; Cammi, C.; Gulinatti, A.; Ghioni, M.

    2012-02-01

    Over the past few years there has been a growing interest in monolithic arrays of single photon avalanche diodes (SPAD) for spatially resolved detection of faint ultrafast optical signals. SPADs implemented in planar technologies offer the typical advantages of microelectronic devices (small size, ruggedness, low voltage, low power, etc.). Furthermore, they have inherently higher photon detection efficiency than PMTs and are able to provide, beside sensitivities down to single-photons, very high acquisition speeds. In order to make SPAD array more and more competitive in time-resolved application it is necessary to face problems like electrical crosstalk between adjacent pixel, moreover all the singlephoton timing electronics with picosecond resolution has to be developed. In this paper we present a new instrument suitable for single-photon imaging applications and made up of 32 timeresolved parallel channels. The 32x1 pixel array that includes SPAD detectors represents the system core, and an embedded data elaboration unit performs on-board data processing for single-photon counting applications. Photontiming information is exported through a custom parallel cable that can be connected to an external multichannel TCSPC system.

  16. Freestanding membrane composed of micro-ring array with ultrahigh sidewall aspect ratio for application in lightweight cathode arrays

    Science.gov (United States)

    Wang, Lanlan; Liu, Hongzhong; Jiang, Weitao; Gao, Wei; Chen, Bangdao; Li, Xin; Ding, Yucheng; An, Ningli

    2014-12-01

    A freestanding multilayer ultrathin nano-membrane (FUN-membrane) with a micro-ring array (MRA) is successfully fabricated through the controllable film deposition. Each micro-ring of FUN-membrane is 3 μm in diameter, 2 μm in height and sub-100 nm in sidewall thickness, demonstrating an ultrahigh sidewall aspect ratio of 20:1. In our strategy, a silica layer (200 nm in thickness), a chromium transition layer (5 nm-thick) and a gold layer (40 nm-thick), were in sequence deposited on patterned photoresist. After removal of the photoresist by lift-off process, a FUN-membrane with MRA was peeled off from the substrate, where the gold layer acted as a protecting layer to prevent the MRA from fracture. The FUN-membrane was then transferred to a flexible polycarbonate (PC) sheet coated with indium tin oxide (ITO) layer, which was then used as a flexible and lightweight cathode. Remarkably, the field emission effect of the fabricated FUN-membrane cathode performs a high field-enhancement factor of 1.2 × 104 and a low turn-on voltage of 2 V/μm, indicating the advantages of the sharp metal edge of MRA. Due to the rational design and material versatility, the FUN-membrane thus could be transferred to either rigid or flexible substrate, even curved surface, such as the skin of bio-robot's arm or leg. Additionally, the FUN-membrane composed of MRA with extremely high aspect ratio of insulator-metal sidewall, also provides potential applications in optical devices, lightweight and flexible display devices, and electronic eye imagers.

  17. Low cost, high concentration ratio solar cell array for space applications

    Science.gov (United States)

    Patterson, R. E.; Rauschenbach, H. S.; Cannady, M. D.; Whang, U. S.; Crabtree, W. L.

    1981-01-01

    A miniaturized Cassegrainian-type concentrator solar array concept for space applications is described. In-orbit cell operating temperatures near 80 C are achieved with purely passive cell cooling and a net concentration ratio of 100. A multiplicity of miniaturized, rigid solar cell concentrator subassemblies are electrically interconnected in conventional fashion and mounted into rigid frames to form concentrator solar panel assemblies approximately 14-mm thick. A plurality of such interconnected panels forms a stowable and deployable solar cell blanket. It is projected that for 20% efficient silicon cells an array of 500 kW beginning-of-life output capability, including orbiter cradle structures, can be transported by a single shuttle orbiter flight into low earth orbit. In-orbit array specific performance is calculated to be approximately 100 W/sq m and 20 W/kg, including all stowage, deployment and array figure control equipment designed for a 30-year orbital life. Higher efficiency gallium arsenide and multiple band gap solar cells will improve these performance factors correspondingly.

  18. Simulation and Application of Dynamic Inspection Modes Using Ultrasonic Phased Arrays

    Science.gov (United States)

    Mahaut, Steve; Chatillon, Sylvain; Raillon-Picot, Raphaële; Calmon, Pierre

    2004-02-01

    NDT techniques using phased arrays are more and more applied in different industrial contexts. Their main advantage is the adaptability to the testing configuration : ability to steer and to focus the beam inside the inspected component taking account the geometry and the constitutive materials, high acquisition rates without raster scanning pattern of the probe using electronic commutation, sectorial scanning inspection to fully insonify the specimen, etc. Optimal use of phased arrays requires simulation tools accounting for the actual testing configuration. For several years, such tools have been developed at the French Atomic Energy Commission. Delay laws, beam forming and echo formation (interaction of the beam with defects or specimen boundaries) models are used to design the arrays, to conceive and to evaluate the performances of methods in realistic and complex configurations. Recently, works have been made to extend the simulation skills to advanced inspection modes : electronic commutation with separate Transmission/Reception patterns, non-symmetric Transmit/Receive delay laws, sectorial scanning inspections. This paper presents some examples of simulation and application of such inspections carried out over complex specimen. These examples demonstrate the interest for simulation tools in terms of prediction, optimization and interpretation of phased arrays techniques.

  19. System-Level Integrated Circuit (SLIC) Technology Development for Phased Array Antenna Applications

    Science.gov (United States)

    Windyka, John A.; Zablocki, Ed G.

    1997-01-01

    This report documents the efforts and progress in developing a 'system-level' integrated circuit, or SLIC, for application in advanced phased array antenna systems. The SLIC combines radio-frequency (RF) microelectronics, digital and analog support circuitry, and photonic interfaces into a single micro-hybrid assembly. Together, these technologies provide not only the amplitude and phase control necessary for electronic beam steering in the phased array, but also add thermally-compensated automatic gain control, health and status feedback, bias regulation, and reduced interconnect complexity. All circuitry is integrated into a compact, multilayer structure configured for use as a two-by-four element phased array module, operating at 20 Gigahertz, using a Microwave High-Density Interconnect (MHDI) process. The resultant hardware is constructed without conventional wirebonds, maintains tight inter-element spacing, and leads toward low-cost mass production. The measured performances and development issues associated with both the two-by-four element module and the constituent elements are presented. Additionally, a section of the report describes alternative architectures and applications supported by the SLIC electronics. Test results show excellent yield and performance of RF circuitry and full automatic gain control for multiple, independent channels. Digital control function, while suffering from lower manufacturing yield, also proved successful.

  20. Miniaturized dual-band antenna array with double-negative (DNG) metamaterial for wireless applications

    Science.gov (United States)

    Alqadami, Abdulrahman Shueai Mohsen; Jamlos, Mohd Faizal; Soh, Ping Jack; Rahim, Sharul Kamal Abdul; Vandenbosch, Guy A. E.; Narbudowicz, Adam

    2017-01-01

    A miniaturized dual-band antenna array using a negative index metamaterial is presented for WiMAX, LTE, and WLAN applications. This left-handed metamaterial plane is located behind the antenna array, and its unit cell is a combination of split-ring resonator, square electric ring resonator, and rectangular electrical coupled resonator. This enables the achievement of a metamaterial structure exhibiting both negative permittivity and permeability, which results in antenna size miniaturization, efficiency, and gain enhancement. Moreover, the proposed metamaterial antenna has realized dual-band operating frequencies compared to a single frequency for normal antenna. The measured reflection coefficient (S11) shows a 50.25% bandwidth in the lower band (from 2.119 to 3.058 GHz) and 4.27% in the upper band (from 5.058 to 5.276 GHz). Radiation efficiency obtained in the lower and upper band are >95 and 80%, respectively.

  1. Mechanical design of a low concentration ratio solar array for a space station application

    Science.gov (United States)

    Biss, M. S.; Hsu, L.

    1983-01-01

    This paper describes a preliminary study and conceptual design of a low concentration ratio solar array for a space station application with approximately a 100 kW power requirement. The baseline design calls for a multiple series of inverted, truncated, pyramidal optical elements with a geometric concentration ratio (GCR) of 6. It also calls for low life cycle cost, simple on-orbit maintainability, 1984 technology readiness date, and gallium arsenide (GaAs) of silicon (Si) solar cell interchangeability. Due to the large area needed to produce the amount of power required for the baseline space station, a symmetrical wing design, making maximum use of the commonality of parts approach, was taken. This paper will describe the mechanical and structural design of a mass-producible solar array that is very easy to tailor to the needs of the individual user requirement.

  2. The fabrication of a multi-spectral lens array and its application in assisting color blindness

    Science.gov (United States)

    Di, Si; Jin, Jian; Tang, Guanrong; Chen, Xianshuai; Du, Ruxu

    2016-01-01

    This article presents a compact multi-spectral lens array and describes its application in assisting color-blindness. The lens array consists of 9 microlens, and each microlens is coated with a different color filter. Thus, it can capture different light bands, including red, orange, yellow, green, cyan, blue, violet, near-infrared, and the entire visible band. First, the fabrication process is described in detail. Second, an imaging system is setup and a color blindness testing card is selected as the sample. By the system, the vision results of normal people and color blindness can be captured simultaneously. Based on the imaging results, it is possible to be used for helping color-blindness to recover normal vision.

  3. Improved performance of high average power semiconductor arrays for applications in diode pumped solid state lasers

    Energy Technology Data Exchange (ETDEWEB)

    Beach, R.; Emanuel, M.; Benett, W.; Freitas, B.; Ciarlo, D.; Carlson, N.; Sutton, S.; Skidmore, J.; Solarz, R.

    1994-01-01

    The average power performance capability of semiconductor diode laser arrays has improved dramatically over the past several years. These performance improvements, combined with cost reductions pursued by LLNL and others in the fabrication and packaging of diode lasers, have continued to reduce the price per average watt of laser diode radiation. Presently, we are at the point where the manufacturers of commercial high average power solid state laser systems used in material processing applications can now seriously consider the replacement of their flashlamp pumps with laser diode pump sources. Additionally, a low cost technique developed and demonstrated at LLNL for optically conditioning the output radiation of diode laser arrays has enabled a new and scalable average power diode-end-pumping architecture that can be simply implemented in diode pumped solid state laser systems (DPSSL`s). This development allows the high average power DPSSL designer to look beyond the Nd ion for the first time. Along with high average power DPSSL`s which are appropriate for material processing applications, low and intermediate average power DPSSL`s are now realizable at low enough costs to be attractive for use in many medical, electronic, and lithographic applications.

  4. Label-free screening of bio-molecular interactions.

    Science.gov (United States)

    Cooper, Matthew A

    2003-11-01

    The majority of techniques currently employed to interrogate a biomolecular interaction require some type of radio- or enzymatic- or fluorescent-labelling to report the binding event. However, there is an increasing awareness of novel techniques that do not require labelling of the ligand or the receptor, and that allow virtually any complex to be screened with minimal assay development. This review focuses on three major label-free screening platforms: surface plasmon resonance biosensors, acoustic biosensors, and calorimetric biosensors. Scientists in both academia and industry are using biosensors in areas that encompass almost all areas drug discovery, diagnostics, and the life sciences. The capabilities and advantages of each technique are compared and key applications involving small molecules, proteins, oligonucleotides, bacteriophage, viruses, bacteria, and cells are reviewed. The role of the interface between the biosensor surface (in the case of SPR and acoustic biosensors) and the chemical or biological systems to be studied is also covered with attention to the covalent and non-covalent coupling chemistries commonly employed.

  5. The fidelity of dynamic signaling by noisy biomolecular networks.

    Directory of Open Access Journals (Sweden)

    Clive G Bowsher

    Full Text Available Cells live in changing, dynamic environments. To understand cellular decision-making, we must therefore understand how fluctuating inputs are processed by noisy biomolecular networks. Here we present a general methodology for analyzing the fidelity with which different statistics of a fluctuating input are represented, or encoded, in the output of a signaling system over time. We identify two orthogonal sources of error that corrupt perfect representation of the signal: dynamical error, which occurs when the network responds on average to other features of the input trajectory as well as to the signal of interest, and mechanistic error, which occurs because biochemical reactions comprising the signaling mechanism are stochastic. Trade-offs between these two errors can determine the system's fidelity. By developing mathematical approaches to derive dynamics conditional on input trajectories we can show, for example, that increased biochemical noise (mechanistic error can improve fidelity and that both negative and positive feedback degrade fidelity, for standard models of genetic autoregulation. For a group of cells, the fidelity of the collective output exceeds that of an individual cell and negative feedback then typically becomes beneficial. We can also predict the dynamic signal for which a given system has highest fidelity and, conversely, how to modify the network design to maximize fidelity for a given dynamic signal. Our approach is general, has applications to both systems and synthetic biology, and will help underpin studies of cellular behavior in natural, dynamic environments.

  6. Standing-wave excited soft x-ray photoemission microscopy: application to Co microdot magnetic arrays

    Energy Technology Data Exchange (ETDEWEB)

    Gray, Alexander; Kronast, Florian; Papp, Christian; Yang, See-Hun; Cramm, Stefan; Krug, Ingo P.; Salmassi, Farhad; Gullikson, Eric M.; Hilken, Dawn L.; Anderson, Erik H.; Fischer, Peter; Durr, Hermann A.; Schneider, Claus M.; Fadley, Charles S.

    2010-10-29

    We demonstrate the addition of depth resolution to the usual two-dimensional images in photoelectron emission microscopy (PEEM), with application to a square array of circular magnetic Co microdots. The method is based on excitation with soft x-ray standing-waves generated by Bragg reflection from a multilayer mirror substrate. Standing wave is moved vertically through sample simply by varying the photon energy around the Bragg condition. Depth-resolved PEEM images were obtained for all of the observed elements. Photoemission intensities as functions of photon energy were compared to x-ray optical calculations in order to quantitatively derive the depth-resolved film structure of the sample.

  7. A Radio-Frequency-over-Fiber link for large-array radio astronomy applications

    CERN Document Server

    Mena, Juan; Cliche, Jean-Francois; Dobbs, Matt; Gilbert, Adam; Tang, Qing Yang

    2013-01-01

    A prototype 425-850 MHz Radio-Frequency-over-Fiber (RFoF) link for the Canadian Hydrogen Intensity Mapping Experiment (CHIME) is presented. The design is based on a directly modulated Fabry-Perot (FP) laser, operating at ambient temperature, and a single-mode fiber. The dynamic performance, gain stability, and phase stability of the RFoF link are characterized. Tests on a two-element interferometer built at the Dominion Radio Astrophysical Observatory for CHIME prototyping demonstrate that RFoF can be successfully used as a cost-effective solution for analog signal transport on the CHIME telescope and other large-array radio astronomy applications

  8. SU-E-T-343: Valencia Applicator Commissioning Using a Micro-Chamber Array

    Energy Technology Data Exchange (ETDEWEB)

    Carmona-Meseguer, V; Palomo-Llinares, R; Candela-Juan, C; Gimeno-Olmos, J; Lliso-Valverde, F [Hospital La Fe, Valencia (Spain); Garcia-Martinez, T [Hospital de La Ribera, Alzira, Valencia (Spain); Richart-Sancho, J [Clinica Benidorm, Benidorm, Alicante (Spain); Granero, D [ERESA-Hospital General Universitario, Mislata, Valencia (Spain); Ballester, F [University of Valencia, Burjassot, Valencia (Spain); Perez-Calatayud, J [Hospital La Fe, Valencia (Spain); Clinica Benidorm, Benidorm, Alicante (Spain)

    2014-06-01

    Purpose: In the commissioning and QA of surface isotope-based applicators, source-indexer distance (SID) has a great influence in the flatness, symmetry and output. To these purposes, methods described in the literature are the use of a special insert at the entrance of dwell chamber or radiochromic films. Here we present the experience with a micro-chamber array to perform the commissioning and QA of Valencia applicators. Methods: Valencia applicators have been used, the classic and the new extra-shielded version. A micro-chamber array has been employed, 1000 SRS (PTW), with 977 liquid filled, 2.3×2.3×0.5 mm{sup 3} sized ion chambers covering 11×11 cm{sup 2}, which spacing is 2.5 mm in the central 5.5×5.5 cm{sup 2}, dedicated mainly in principle, in conjunction with Octavius 4D (PTW), to IMRT, VMAT, SBRT verifications. Verisoft software that allows for 3D and planar analysis has been used to evaluate the results. Applicators were located on the surface of the array. To verify the SID, measurements corresponding to the reference value, SID ± 1 mm and SID ± 2 mm were acquired (integration time was fixed in order to discard the influence of the source entrance/exit). Once SID was determined, standard protocol treatments corresponding to 3 Gy and 7 Gy were acquired in order to establish typical patient dose distribution. Results: The method is fast and sensitive. The SID obtained was 1321 mm which is the nominal value included in the applicator manual. For example at 1319 mm an asymmetry of ±8% with respect to the central value was measured, along with a central deviation of −4% referred to 1321 mm. Conclusion: A practical method for the commissioning and QA of Valencia applicators has been described. It has been shown that it is an efficient and accurate tool for these purposes as well as for the verification of the absolute output constancy.

  9. The detection of specific biomolecular interactions with micro-Hall magnetic sensors

    Science.gov (United States)

    Manandhar, Pradeep; Chen, Kan-Sheng; Aledealat, Khaled; Mihajlović, Goran; Yun, C. Steven; Field, Mark; Sullivan, Gerard J.; Strouse, Geoffrey F.; Bryant Chase, P.; von Molnár, Stephan; Xiong, Peng

    2009-09-01

    The detection of reagent-free specific biomolecular interactions through sensing of nanoscopic magnetic labels provides one of the most promising routes to biosensing with solid-state devices. In particular, Hall sensors based on semiconductor heterostructures have shown exceptional magnetic moment sensitivity over a large dynamic field range suitable for magnetic biosensing using superparamagnetic labels. Here we demonstrate the capability of such micro-Hall sensors to detect specific molecular binding using biotin-streptavidin as a model system. We apply dip-pen nanolithography to selectively biotinylate the active areas of InAs micro-Hall devices with nanoscale precision. Specific binding of complementarily functionalized streptavidin-coated superparamagnetic beads to the Hall crosses occurs via molecular recognition, and magnetic detection of the assembled beads is achieved at room temperature using phase sensitive micro-Hall magnetometry. The experiment constitutes the first unambiguous demonstration of magnetic detection of specific biomolecular interactions with semiconductor micro-Hall sensors, and the selective molecular functionalization and resulting localized bead assembly demonstrate the possibility of multiplexed sensing of multiple target molecules using a single device with an array of micro-Hall sensors.

  10. Scalable, epitaxy-free fabrication of super-absorbing sparse III-V nanowire arrays for photovoltaic applications (Conference Presentation)

    Science.gov (United States)

    Cheng, Wen-Hui; Fountaine, Katherine T.; Bukowsky, Colton R.; Atwater, Harry A.

    2016-09-01

    III-V compound semiconductor nanowire arrays are promising candidates for photovoltaics applications due to their high volumetric absorption. Uniform nanowire arrays exhibit high absorption at certain wavelengths due to strong coupling into lossy waveguide modes. Previously, simulations predicted near-unity, broadband absorption in sparse semiconductor nanowire arrays (Polymer-embedded wires are removed from the bulk InP substrate by a mechanical method that facilitates extensive reuse of a single bulk InP wafer to synthesize many polymer-embedded nanowire array thin films. Arrays containing multiple nanowire radii and tapered nanowires were successfully fabricated. For both designs, the polymer-embedded arrays achieved 90% broadband absorption (λ=400-900 nm) in less than 100 nm planar equivalence of InP. The addition of a silver back reflector increased this broadband absorption to 95%. The repeatable process of imprinting, etching and peeling to obtain many nanowire arrays from one single wafer represents an economical manufacturing route for high efficiency III-V photovoltaics. [1] K.T. Fountaine, C.G. Kendall, Harry A. Atwater, "Near-unity broadband absorption designs for semiconducting nanowire arrays via localized radial mode excitation," Opt. Exp. (2014).

  11. Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC and its application for DNA methylation analysis

    Directory of Open Access Journals (Sweden)

    Ottaviani Diego

    2008-05-01

    Full Text Available Abstract Background The major histocompatibility complex (MHC is essential for human immunity and is highly associated with common diseases, including cancer. While the genetics of the MHC has been studied intensively for many decades, very little is known about the epigenetics of this most polymorphic and disease-associated region of the genome. Methods To facilitate comprehensive epigenetic analyses of this region, we have generated a genomic tiling array of 2 Kb resolution covering the entire 4 Mb MHC region. The array has been designed to be compatible with chromatin immunoprecipitation (ChIP, methylated DNA immunoprecipitation (MeDIP, array comparative genomic hybridization (aCGH and expression profiling, including of non-coding RNAs. The array comprises 7832 features, consisting of two replicates of both forward and reverse strands of MHC amplicons and appropriate controls. Results Using MeDIP, we demonstrate the application of the MHC array for DNA methylation profiling and the identification of tissue-specific differentially methylated regions (tDMRs. Based on the analysis of two tissues and two cell types, we identified 90 tDMRs within the MHC and describe their characterisation. Conclusion A tiling array covering the MHC region was developed and validated. Its successful application for DNA methylation profiling indicates that this array represents a useful tool for molecular analyses of the MHC in the context of medical genomics.

  12. A Reconfigurable Systolic Array Architecture for Multicarrier Wireless and Multirate Applications

    Directory of Open Access Journals (Sweden)

    H. Ho

    2009-01-01

    Full Text Available A reconfigurable systolic array (RSA architecture that supports the realization of DSP functions for multicarrier wireless and multirate applications is presented. The RSA consists of coarse-grained processing elements that can be configured as complex DSP functions that are the basic building blocks of Polyphase-FIR filters, phase shifters, DFTs, and Polyphase-DFT circuits. The homogeneous characteristic of the RSA architecture, where each reconfigurable processing element (PE cell is connected to its nearest neighbors via configurable switch (SW elements, enables array expansion for parallel processing and facilitates time sharing computation of high-throughput data by individual PEs. For DFT circuit configurations, an algorithmic optimization technique has been employed to reduce the overall number of vector-matrix products to be mapped on the RSA. The hardware complexity and throughput of the RSA-based DFT structures have been evaluated and compared against several conventional modular FFT realizations. Designs and circuit implementations of the PE cell and several RSAs configured as DFT and Polyphase filter circuits are also presented. The RSA architecture offers significant flexibility and computational capacity for applications that require real time reconfiguration and high-density computing.

  13. Biomolecular Modification of Inorganic Crystal Growth

    Energy Technology Data Exchange (ETDEWEB)

    De Yoreo, J J

    2007-04-27

    The fascinating shapes and hierarchical designs of biomineralized structures are an inspiration to materials scientists because of the potential they suggest for biomolecular control over materials synthesis. Conversely, the failure to prevent or limit tissue mineralization in the vascular, skeletal, and urinary systems is a common source of disease. Understanding the mechanisms by which organisms direct or limit crystallization has long been a central challenge to the biomineralization community. One prevailing view is that mineral-associated macromolecules are responsible for either inhibiting crystallization or initiating and stabilizing non-equilibrium crystal polymorphs and morphologies through interactions between anionic moieties and cations in solution or at mineralizing surfaces. In particular, biomolecules that present carboxyl groups to the growing crystal have been implicated as primary modulators of growth. Here we review the results from a combination of in situ atomic force microscopy (AFM) and molecular modeling (MM) studies to investigate the effect of specific interactions between carboxylate-rich biomolecules and atomic steps on crystal surfaces during the growth of carbonates, oxalates and phosphates of calcium. Specifically, we how the growth kinetics and morphology depend on the concentration of additives that include citrate, simple amino acids, synthetic Asp-rich polypeptides, and naturally occurring Asp-rich proteins found in both functional and pathological mineral tissues. The results reveal a consistent picture of shape modification in which stereochemical matching of modifiers to specific atomic steps drives shape modification. Inhibition and other changes in growth kinetics are shown to be due to a range of mechanisms that depend on chemistry and molecular size. Some effects are well described by classic crystal growth theories, but others, such as step acceleration due to peptide charge and hydrophylicity, were previously unrealized

  14. In situ monitoring of biomolecular processes in living systems using surface-enhanced Raman scattering

    Science.gov (United States)

    Altunbek, Mine; Kelestemur, Seda; Culha, Mustafa

    2015-12-01

    Surface-enhanced Raman scattering (SERS) continues to strive to gather molecular level information from dynamic biological systems. It is our ongoing effort to utilize the technique for understanding of the biomolecular processes in living systems such as eukaryotic and prokaryotic cells. In this study, the technique is investigated to identify cell death mechanisms in 2D and 3D in vitro cell culture models, which is a very important process in tissue engineering and pharmaceutical applications. Second, in situ biofilm formation monitoring is investigated to understand how microorganisms respond to the environmental stimuli, which inferred information can be used to interfere with biofilm formation and fight against their pathogenic activity.

  15. Fabrication of highly ordered TiO2 nanorod/nanotube adjacent arrays for photoelectrochemical applications.

    Science.gov (United States)

    Zhang, Haimin; Liu, Porun; Liu, Xiaolu; Zhang, Shanqing; Yao, Xiangdong; An, Taicheng; Amal, Rose; Zhao, Huijun

    2010-07-06

    This work reports a facile approach to fabricate a perpendicularly aligned and highly ordered TiO(2) nanorod/nanotube (NR/NT) adjacent film by directly anodizing a modified titanium foil. The titanium foil substrate was modified with a layer of crystalline TiO(2) film via a hydrothermal process in 0.05 M (NH(4))(2)S(2)O(8). The resultant NR/NT architecture consists of a highly ordered nanorod top layer that directly adjoins to a highly ordered nanotube array bottom layer. The thickness of the top nanorod layer was approximately 90 nm with average nanorod diameter of 22 nm after 20 min of anodization. The thickness of the bottom nanotube array layer was found to be ca. 250 nm after 20 min of anodization, having an average outer and inner tubular diameters of 120 and 80 nm, respectively. A broad implication of the method is that a simple modification to the substrate surface can lead to new forms of nanostructures. For as-anodized NR/NT samples, XRD analysis reveals that the nanorods are of anatase TiO(2) crystalline form while the nanotubes are amorphous. Anatase TiO(2) crystalline form of NR/NT film with high crystallinity can be obtained by thermally treating the as-anodized sample at 450 degrees C for 2 h in air. The resultant NR/NT film was used as a photoanode for photoactivity evaluation. Comparing with a nanotube array photoanode prepared by direct anodization of unmodified titanium foil, the NR/NT photoanode exhibits a unique feature of selective photocatalytic oxidation toward organics, which makes it very attractive to photocatalytic degradation of organic pollutants, sensing, and other applications.

  16. New product development with the innovative biomolecular sublingual immunotherapy formulations for the management of allergic rhinitis

    Directory of Open Access Journals (Sweden)

    Frati F

    2014-09-01

    helper 2, and T helper 3 cells by polymerase chain reaction array on mRNA extracted from Waldeyer's ring tissue (adenoids. Sublingual immunotherapy with a defined content of major allergens in micrograms induced a strong downregulation of genes involved in T helper 2 and T helper 1 activation and function, allowing the definition of the immunologic effect as "bio-homeostatic". This clinical and immunological model must be implemented with respect to other allergens, thus expanding the application of a treatment with a unique disease-modifying capacity. Keywords: allergen immunotherapy, allergy, component resolved diagnosis, major allergens, allergen molecules

  17. LDRD final report on Bloch Oscillations in two-dimensional nanostructure arrays for high frequency applications.

    Energy Technology Data Exchange (ETDEWEB)

    Lyo, Sungkwun Kenneth; Pan, Wei; Reno, John Louis; Wendt, Joel Robert; Barton, Daniel Lee

    2008-09-01

    We have investigated the physics of Bloch oscillations (BO) of electrons, engineered in high mobility quantum wells patterned into lateral periodic arrays of nanostructures, i.e. two-dimensional (2D) quantum dot superlattices (QDSLs). A BO occurs when an electron moves out of the Brillouin zone (BZ) in response to a DC electric field, passing back into the BZ on the opposite side. This results in quantum oscillations of the electron--i.e., a high frequency AC current in response to a DC voltage. Thus, engineering a BO will yield continuously electrically tunable high-frequency sources (and detectors) for sensor applications, and be a physics tour-de-force. More than a decade ago, Bloch oscillation (BO) was observed in a quantum well superlattice (QWSL) in short-pulse optical experiments. However, its potential as electrically biased high frequency source and detector so far has not been realized. This is partially due to fast damping of BO in QWSLs. In this project, we have investigated the possibility of improving the stability of BO by fabricating lateral superlattices of periodic coupled nanostructures, such as metal grid, quantum (anti)dots arrays, in high quality GaAs/Al{sub x}Ga{sub 1-x}As heterostructures. In these nanostructures, the lateral quantum confinement has been shown theoretically to suppress the optical-phonon scattering, believed to be the main mechanism for fast damping of BO in QWSLs. Over the last three years, we have made great progress toward demonstrating Bloch oscillations in QDSLs. In the first two years of this project, we studied the negative differential conductance and the Bloch radiation induced edge-magnetoplasmon resonance. Recently, in collaboration with Prof. Kono's group at Rice University, we investigated the time-domain THz magneto-spectroscopy measurements in QDSLs and two-dimensional electron systems. A surprising DC electrical field induced THz phase flip was observed. More measurements are planned to investigate this

  18. Ex vivo evaluation of a microneedle array device for transdermal application.

    Science.gov (United States)

    Indermun, Sunaina; Choonara, Yahya E; Kumar, Pradeep; du Toit, Lisa C; Modi, Girish; van Vuuren, Sandy; Luttge, Regina; Pillay, Viness

    2015-12-30

    A new approach of transdermal drug delivery is the use of microneedles. This promising technique offers the potential to be broadly used for drug administration as it enables the dramatic increase in permeation of medicaments across the stratum corneum. The potential of microneedles has evolved to spawn a plethora of potential transdermal applications. In order to advance the microneedle capabilities and possibly revolutionize advanced drug delivery, this study introduces a novel transdermal electro-modulated hydrogel-microneedle array (EMH-MNA) device composed of a nano-porous, embeddable ceramic microneedle array as well as an optimized EMH for the electro-responsive delivery of indomethacin through the skin. The ex vivo permeation as well as drug release experiments were performed on porcine skin tissue to ascertain the electro-responsive capabilities of the device. In addition, the microbial permeation ability of the microneedles across the viable epidermis in both microneedle-punctured skin as well as hypodermic needle-punctured skin was determined. Ex vivo evaluation of the EMH-MNA device across porcine skin demonstrated that without electro-stimulation, significantly less drug release was obtained (±0.4540mg) as compared to electro-stimulation (±2.93mg).

  19. A MEMS-based solid propellant microthruster array for space and military applications

    Science.gov (United States)

    Chaalane, A.; Chemam, R.; Houabes, M.; Yahiaoui, R.; Metatla, A.; Ouari, B.; Metatla, N.; Mahi, D.; Dkhissi, A.; Esteve, D.

    2015-12-01

    Since combustion is an easy way to achieve large quantities of energy from a small volume, we developed a MEMS based solid propellant microthruster array for small spacecraft and micro-air-vehicle applications. A thruster is composed of a fuel chamber layer, a top-side igniter with a micromachined nozzle in the same silicon layer. Layers are assembled by adhesive bonding to give final MEMS array. The thrust force is generated by the combustion of propellant stored in a few millimeter cube chamber. The micro-igniter is a polysilicon resistor deposited on a low stress SiO2/SiNx thin membrane to ensure a good heat transfer to the propellant and thus a low electric power consumption. A large range of thrust force is obtained simply by varying chamber and nozzle geometry parameters in one step of Deep Reactive Ion Etching (DRIE). Experimental tests of ignition and combustion employing home made (DB+x%BP) propellant composed of a DoubleBase and Black-Powder. A temperature of 250 °C, enough to propellant initiation, is reached for 40 mW of electric power. A combustion rate of about 3.4 mm/s is measured for DB+20%BP propellant and thrust ranges between 0.1 and 3,5 mN are obtained for BP ratio between 10% and 30% using a microthruster of 100 μm of throat wide.

  20. A multi-channel femtoampere-sensitivity conductometric array for biosensing applications.

    Science.gov (United States)

    Gore, Amit; Chakrabartty, Shantanu; Pal, Sudeshna; Alocilja, Evangelyn

    2006-01-01

    Rapid detection of pathogens using field deployable biosensors requires integrated sensing and data processing. Detection of low concentration of biological agents is possible using accurate and real-time signal characterization devices. This paper presents a multi-channel conductometric array that can detect and measure current up to femtoampere range. The architecture uses a novel semi-synchronous SigmaDelta modulation that allows measurement of ultra-small currents by using a hysteretic comparison technique. The architecture achieves higher energy efficiency over a conventional SigmaDelta by reducing the total switching cycles of the comparator. A 3 mm x 3 mm chip implementing a 42 channel potentiostat array has been prototyped in a 0.5 microm CMOS technology. Measured results show 10 bits of resolution, with a sensitivity of upto 50 fA of current. The power consumption of the potentiostat is 11 microW per channel at a sampling rate of 250 kHz. The multi-channel potentiostat has been integrated with a conductometric biosensor for field deployable applications. Results with a Bacillus Cereus based biosensor demonstrate the effectiveness of the potentiostat in characterizing different concentration levels of pathogens in realtime.

  1. A Tutorial on Optical Feeding of Millimeter-Wave Phased Array Antennas for Communication Applications

    Directory of Open Access Journals (Sweden)

    Ivan Aldaya

    2015-01-01

    Full Text Available Given the interference avoidance capacity, high gain, and dynamical reconfigurability, phased array antennas (PAAs have emerged as a key enabling technology for future broadband mobile applications. This is especially important at millimeter-wave (mm-wave frequencies, where the high power consumption and significant path loss impose serious range constraints. However, at mm-wave frequencies the phase and amplitude control of the feeding currents of the PAA elements is not a trivial issue because electrical beamforming requires bulky devices and exhibits relatively narrow bandwidth. In order to overcome these limitations, different optical beamforming architectures have been presented. In this paper we review the basic principles of phased arrays and identify the main challenges, that is, integration of high-speed photodetectors with antenna elements and the efficient optical control of both amplitude and phase of the feeding current. After presenting the most important solutions found in the literature, we analyze the impact of the different noise sources on the PAA performance, giving some guidelines for the design of optically fed PAAs.

  2. Titanium plate supported MoS2 nanosheet arrays for supercapacitor application

    Science.gov (United States)

    Wang, Lina; Ma, Ying; Yang, Min; Qi, Yanxing

    2017-02-01

    A promising new concept is to apply binder-free supercapacitor electrode by directly growing active materials on current collectors. However, there are many challenges to be solved, such as fabrication of well quality electronic contact and good mechanical stability films through a simple and feasible method. In this study, MoS2 nanosheet arrays supported on titanium plate has been synthesized by a hydrothermal method without other additives, surface active agents and toxic reagents. As the supercapacitor electrode, a good capacitance of 133 F g-1 is attained at a discharge current density of 1 A g-1. The specific energy density is 11.11 Wh kg-1 at a power density of 0.53 kW kg-1. Moreover, the electrode shows an excellent cyclic stability. The loss of capacity is only 7% even after 1000 cycles. In addition, the formation mechanism is proposed. The facile method of fabricating MoS2 nanosheet arrays on titanium plate affords an green and effective way to prepare other metal sulfides for the application in electrochemical capacitors.

  3. Ultra-high-aspect-orthogonal and tunable three dimensional polymeric nanochannel stack array for BioMEMS applications

    Science.gov (United States)

    Heo, Joonseong; Kwon, Hyukjin J.; Jeon, Hyungkook; Kim, Bumjoo; Kim, Sung Jae; Lim, Geunbae

    2014-07-01

    Nanofabrication technologies have been a strong advocator for new scientific fundamentals that have never been described by traditional theory, and have played a seed role in ground-breaking nano-engineering applications. In this study, we fabricated ultra-high-aspect (~106 with O(100) nm nanochannel opening and O(100) mm length) orthogonal nanochannel array using only polymeric materials. Vertically aligned nanochannel arrays in parallel can be stacked to form a dense nano-structure. Due to the flexibility and stretchability of the material, one can tune the size and shape of the nanochannel using elongation and even roll the stack array to form a radial-uniformly distributed nanochannel array. The roll can be cut at discretionary lengths for incorporation with a micro/nanofluidic device. As examples, we demonstrated ion concentration polarization with the device for Ohmic-limiting/overlimiting current-voltage characteristics and preconcentrated charged species. The density of the nanochannel array was lower than conventional nanoporous membranes, such as anodic aluminum oxide membranes (AAO). However, accurate controllability over the nanochannel array dimensions enabled multiplexed one microstructure-on-one nanostructure interfacing for valuable biological/biomedical microelectromechanical system (BioMEMS) platforms, such as nano-electroporation.Nanofabrication technologies have been a strong advocator for new scientific fundamentals that have never been described by traditional theory, and have played a seed role in ground-breaking nano-engineering applications. In this study, we fabricated ultra-high-aspect (~106 with O(100) nm nanochannel opening and O(100) mm length) orthogonal nanochannel array using only polymeric materials. Vertically aligned nanochannel arrays in parallel can be stacked to form a dense nano-structure. Due to the flexibility and stretchability of the material, one can tune the size and shape of the nanochannel using elongation and even

  4. Interference mitigation for simultaneous transmit and receive applications on digital phased array systems

    Science.gov (United States)

    Snow, Trevor M.

    As analog-to-digital (ADC) and digital-to-analog conversion (DAC) technologies become cheaper and digital processing capabilities improve, phased array systems with digital transceivers at every element will become more commonplace. These architectures offer greater capability over traditional analog systems and enable advanced applications such as multiple-input, multiple-output (MIMO) communications, adaptive beamforming, space-time adaptive processing (STAP), and MIMO for radar. Capabilities for such systems are still limited by the need for isolating self-interference from transmitters at co-located receivers. The typical approach of time-sharing the antenna aperture between transmitters and receivers works but leaves the receivers blind for a period of time. For full-duplex operation, some systems use separate frequency bands for transmission and reception, but these require fixed filtering which reduces the system's ability to adapt to its environment and is also an inefficient use of spectral resources. To that end, tunable, high quality-factor filters are used for sub-band isolation and protect receivers while allowing open reception at other frequencies. For more flexibility, another emergent area of related research has focused on co-located spatial isolation using multiple antennas and direct injection of interference cancellation signals into receivers, which enables same-frequency full-duplex operation. With all these methods, self-interference must be reduced by an amount that prevents saturation of the ADC. Intermodulation products generated in the receiver in this process can potentially be problematic, as certain intermodulation products may appear to come from a particular angle and cohere in the beamformer. This work explores various digital phased array architectures and the how the flexibility afforded by an all-digital beamforming architecture, layered with other methods of isolation, can be used to reduce self-interference within the system

  5. The Application of Seismic Array Techniques to Image UXO-Contaminated Littoral Environments

    Science.gov (United States)

    Gritto, R.; Korneev, V.; Nihei, K.; Johnson, L.

    2004-12-01

    We investigate the application of seismic array techniques to increase the energy radiation and resolution of seismic waves in littoral areas to improve the success rate of detecting UXO in contaminated underwater sites. The investigation is carried out based on numerical modeling, including 2-D finite difference modeling and 3-D analytical solutions of the problem. In addition to various UXO orientations, we also modeled the presence of clutter in the subsurface. An array of 31 source and receiver elements was located floating in the water as well as sited on the seafloor, which allowed the comparison between single source-receiver combinations and beam-forming techniques. The numerical forward modeling involved noise-free and noisy data as well as interferences by free surface reflections (off the water-air interface), which produced the strongest phases on the seismograms. The inversion of the scattered seismic energy was performed using a 2-D eikonal solver (curved rays), which stacked and located the recorded amplitudes in space to determine the location of the UXO. The inversion also included the determination of the best fitting velocity model for the bay mud. The results of the 2-D modeling indicated that a single, horizontally oriented, UXO could be well detected as a function of depth and horizontal location. In the case of the source-receiver array being placed on the seafloor, the edges of the UXO were resolved indicating its horizontal extent, while the top of the UXO was correctly located. The cases of a second, vertically oriented, UXO and clutter located 0.1 m next to the first UXO, produced similar results. In each case the two objects produced slight interference in the backscattered seismic signal, yet the resolution of the seismic wave was still good enough to resolve the two objects from each other. The introduction of a rippled water-seafloor interface during the forward modeling didn't change the results for the case of a floating source

  6. Electrospun Aligned Fibrous Arrays and Twisted Ropes: Fabrication, Mechanical and Electrical Properties, and Application in Strain Sensors

    Science.gov (United States)

    Zheng, Jie; Yan, Xu; Li, Meng-Meng; Yu, Gui-Feng; Zhang, Hong-Di; Pisula, Wojciech; He, Xiao-Xiao; Duvail, Jean-Luc; Long, Yun-Ze

    2015-12-01

    Electrospinning (e-spinning) is a versatile technique to fabricate ultrathin fibers from a rich variety of functional materials. In this paper, a modified e-spinning setup with two-frame collector is proposed for the fabrication of highly aligned arrays of polystyrene (PS) and polyvinylidene fluoride (PVDF) nanofibers, as well as PVDF/carbon nanotube (PVDF/CNT) composite fibers. Especially, it is capable of producing fibrous arrays with excellent orientation over a large area (more than 14 cm × 12 cm). The as-spun fibers are suspended and can be easily transferred to other rigid or flexible substrates. Based on the aligned fibrous arrays, twisted long ropes are also prepared. Compared with the aligned arrays, twisted PVDF/CNT fiber ropes show enhanced mechanical and electrical properties and have potential application in microscale strain sensors.

  7. [Genetic algorithm application to multi-focus patterns of 256-element phased array for focused ultrasound surgery].

    Science.gov (United States)

    Xu, Feng; Wan, Mingxi; Lu, Mingzhu

    2008-10-01

    The genetic optimal algorithm and sound field calculation approach for the spherical-section phased array are presented in this paper. The in-house manufactured 256-element phased array focused ultrasound surgery system is briefly described. The on-axis single focus and off-axis single focus are simulated along with the axis-symmetric six-focus patter and the axis-asymmetric four-focus pattern using a 256-element phased array and the genetic optimal algorithm and sound field calculation approach. The experimental results of the described 256-element phased array focused ultrasound surgery system acting on organic glass and phantom are also analyzed. The results of the simulations and experiments confirm the applicability of the genetic algorithm and field calculation approaches in accurately steering three dimensional foci and focus.

  8. Applications of tensor (multiway array) factorizations and decompositions in data mining

    DEFF Research Database (Denmark)

    Mørup, Morten

    2011-01-01

    Tensor (multiway array) factorization and decomposition has become an important tool for data mining. Fueled by the computational power of modern computer researchers can now analyze large-scale tensorial structured data that only a few years ago would have been impossible. Tensor factorizations...... have several advantages over two-way matrix factorizations including uniqueness of the optimal solution and component identification even when most of the data is missing. Furthermore, multiway decomposition techniques explicitly exploit the multiway structure that is lost when collapsing some...... of the modes of the tensor in order to analyze the data by regular matrix factorization approaches. Multiway decomposition is being applied to new fields every year and there is no doubt that the future will bring many exciting new applications. The aim of this overview is to introduce the basic concepts...

  9. Performance measurement of low concentration ratio solar array for space application

    Science.gov (United States)

    Mills, M. W.

    1984-01-01

    The measured performance of a silicon and a gallium arsenide low concentration ratio solar array (LCRSA) element is presented. The element characteristics measured in natural sunlight are off pointing performance and response to mechanical distortions. Laboratory measurements of individual silicon and gallium-arsenide solar cell assemblies are also made. The characteristics measured in the laboratory involved responses to temperature and intensity variations as well as to the application of reverse bias potentials. The element design details covered include the materials, the solar cells, and the rationale for selecting these specific characteristics. The measured performance characteristics are contrasted with the predicted values for both laboratory testing and high altitude natural sunlight testing. Excellent agreement between analytical predictions and measured performance is observed.

  10. Isolation Improvement of a Microstrip Patch Array Antenna for WCDMA Indoor Repeater Applications

    Directory of Open Access Journals (Sweden)

    Hongmin Lee

    2012-01-01

    Full Text Available This paper presents the isolation improvement techniques of a microstrip patch array antenna for the indoor wideband code division multiple access (WCDMA repeater applications. One approach is to construct the single-feed switchable feed network structure with an MS/NRI coupled-line coupler in order to reduce the mutual coupling level between antennas. Another approach is to insert the soft surface unit cells near the edges of the microstrip patch elements in order to reduce backward radiation waves. In order to further improve the isolation level, the server antenna and donor antenna are installedinorthogonal direction. The fabricated antenna exhibits a gain over 7 dBi and higher isolation level between server and donor antennas below −70 dB at WCDMA band.

  11. New CMOS readout circuit with background suppression and CDS for infrared focal plane array applications

    Institute of Scientific and Technical Information of China (English)

    LI Xin-yi; ZHAO Yi-qiang; YAO Su-ying

    2009-01-01

    A high injection, large dynamic range, stable detector bias, small area and low power consumption CMOS readout circuit with background current suppression and correlated double sampling (CDS) for a high-resolution infrared focal plane array applications is proposed. The detector bias error in this structure is less than 0.1 mV. The input resistance is ideally zero, which is important to obtain high injection efficiency. Unit-cell occupies 10 μm × 15 μm area and consumes less than 0.4 mW power. Charge storage capacity is 3 × 108 electrons. The function and performance of the proposed readout circuit have been verified by experimental results.

  12. System-level integrated circuit (SLIC) development for phased array antenna applications

    Science.gov (United States)

    Shalkhauser, K. A.; Raquet, C. A.

    1991-01-01

    A microwave/millimeter wave system-level integrated circuit (SLIC) being developed for use in phased array antenna applications is described. The program goal is to design, fabricate, test, and deliver an advanced integrated circuit that merges radio frequency (RF) monolithic microwave integrated circuit (MMIC) technologies with digital, photonic, and analog circuitry that provide control, support, and interface functions. As a whole, the SLIC will offer improvements in RF device performance, uniformity, and stability while enabling accurate, rapid, repeatable control of the RF signal. Furthermore, the SLIC program addresses issues relating to insertion of solid state devices into antenna systems, such as the reduction in number of bias, control, and signal lines. Program goals, approach, and status are discussed.

  13. Planar Array Sensor for High-speed Component Distribution Imaging in Fluid Flow Applications

    Directory of Open Access Journals (Sweden)

    Uwe Hampel

    2007-10-01

    Full Text Available A novel planar array sensor based on electrical conductivity measurements ispresented which may be applied to visualize surface fluid distributions. The sensor ismanufactured using printed-circuit board fabrication technology and comprises of 64 x 64interdigital sensing structures. An associated electronics measures the electricalconductivity of the fluid over each individual sensing structure in a multiplexed manner byapplying a bipolar excitation voltage and by measuring the electrical current flowing from adriver electrode to a sensing electrode. After interrogating all sensing structures, a two-dimensional image of the conductivity distribution over a surface is obtained which in turnrepresents fluid distributions over sensor’s surface. The employed electronics can acquire upto 2500 frames per second thus being able to monitor fast transient phenomena. The systemhas been evaluated regarding measurement accuracy and depth sensitivity. Furthermore, theapplication of the sensor in the investigation of two different flow applications is presented.

  14. Time-resolved methods in biophysics. 9. Laser temperature-jump methods for investigating biomolecular dynamics.

    Science.gov (United States)

    Kubelka, Jan

    2009-04-01

    Many important biochemical processes occur on the time-scales of nanoseconds and microseconds. The introduction of the laser temperature-jump (T-jump) to biophysics more than a decade ago opened these previously inaccessible time regimes up to direct experimental observation. Since then, laser T-jump methodology has evolved into one of the most versatile and generally applicable methods for studying fast biomolecular kinetics. This perspective is a review of the principles and applications of the laser T-jump technique in biophysics. A brief overview of the T-jump relaxation kinetics and the historical development of laser T-jump methodology is presented. The physical principles and practical experimental considerations that are important for the design of the laser T-jump experiments are summarized. These include the Raman conversion for generating heating pulses, considerations of size, duration and uniformity of the temperature jump, as well as potential adverse effects due to photo-acoustic waves, cavitation and thermal lensing, and their elimination. The laser T-jump apparatus developed at the NIH Laboratory of Chemical Physics is described in detail along with a brief survey of other laser T-jump designs in use today. Finally, applications of the laser T-jump in biophysics are reviewed, with an emphasis on the broad range of problems where the laser T-jump methodology has provided important new results and insights into the dynamics of the biomolecular processes.

  15. Biomolecular detection using a metal semiconductor field effect transistor

    Science.gov (United States)

    Estephan, Elias; Saab, Marie-Belle; Buzatu, Petre; Aulombard, Roger; Cuisinier, Frédéric J. G.; Gergely, Csilla; Cloitre, Thierry

    2010-04-01

    In this work, our attention was drawn towards developing affinity-based electrical biosensors, using a MESFET (Metal Semiconductor Field Effect Transistor). Semiconductor (SC) surfaces must be prepared before the incubations with biomolecules. The peptides route was adapted to exceed and bypass the limits revealed by other types of surface modification due to the unwanted unspecific interactions. As these peptides reveal specific recognition of materials, then controlled functionalization can be achieved. Peptides were produced by phage display technology using a library of M13 bacteriophage. After several rounds of bio-panning, the phages presenting affinities for GaAs SC were isolated; the DNA of these specific phages were sequenced, and the peptide with the highest affinity was synthesized and biotinylated. To explore the possibility of electrical detection, the MESFET fabricated with the GaAs SC were used to detect the streptavidin via the biotinylated peptide in the presence of the bovine Serum Albumin. After each surface modification step, the IDS (current between the drain and the source) of the transistor was measured and a decrease in the intensity was detected. Furthermore, fluorescent microscopy was used in order to prove the specificity of this peptide and the specific localisation of biomolecules. In conclusion, the feasibility of producing an electrical biosensor using a MESFET has been demonstrated. Controlled placement, specific localization and detection of biomolecules on a MESFET transistor were achieved without covering the drain and the source. This method of functionalization and detection can be of great utility for biosensing application opening a new way for developing bioFETs (Biomolecular Field-Effect Transistor).

  16. Application of Correlation and Coherency Methods to Naqu Seismic Array Design

    Institute of Scientific and Technical Information of China (English)

    Hao Chunyue; Zheng Zhong

    2006-01-01

    The waveform data recorded during the site survey of the Naqu seismic array in Aug. 2004 were processed by the author. According to the relativity of site pairs in time and frequency domains, the reference values of the inner ring and outer ring were determined. The author evaluated the array deployed for site survey as the primary array, and the results show that the resolution of the primary array is high enough to locate earthquakes precisely.

  17. Nanowire-organic thin film transistor integration and scale up towards developing sensor array for biomedical sensing applications

    Science.gov (United States)

    Kumar, Prashanth S.; Hankins, Phillip T.; Rai, Pratyush; Varadan, Vijay K.

    2010-04-01

    Exploratory research works have demonstrated the capability of conducting nanowire arrays in enhancing the sensitivity and selectivity of bio-electrodes in sensing applications. With the help of different surface manipulation techniques, a wide range of biomolecules have been successfully immobilized on these nanowires. Flexible organic electronics, thin film transistor (TFT) fabricated on flexible substrate, was a breakthrough that enabled development of logic circuits on flexible substrate. In many health monitoring scenarios, a series of biomarkers, physical properties and vital signals need to be observed. Since the nano-bio-electrodes are capable of measuring all or most of them, it has been aptly suggested that a series of electrode (array) on single substrate shall be an excellent point of care tool. This requires an efficient control system for signal acquisition and telemetry. An array of flexible TFTs has been designed that acts as active matrix for controlled switching of or scanning by the sensor array. This array is a scale up of the flexible organic TFT that has been fabricated and rigorously tested in previous studies. The integration of nanowire electrodes to the organic electronics was approached by growing nanowires on the same substrate as TFTs and fl ip chip packaging, where the nanowires and TFTs are made on separate substrates. As a proof of concept, its application has been explored in various multi-focal biomedical sensing applications, such as neural probes for monitoring neurite growth, dopamine, and neuron activity; myocardial ischemia for spatial monitoring of myocardium.

  18. Imaging and chemical surface analysis of biomolecular functionalization of monolithically integrated on silicon Mach-Zehnder interferometric immunosensors

    Energy Technology Data Exchange (ETDEWEB)

    Gajos, Katarzyna, E-mail: kasia.fornal@uj.edu.pl [M. Smoluchowski Institute of Physics, Jagiellonian University, Łojasiewicza 11, 30-348 Kraków (Poland); Angelopoulou, Michailia; Petrou, Panagiota [Institute of Nuclear & Radiological Sciences & Technology, Energy & Safety, NCSR Demokritos, P. Grigoriou & Neapoleos St, Aghia Paraksevi 15310, Athens (Greece); Awsiuk, Kamil [M. Smoluchowski Institute of Physics, Jagiellonian University, Łojasiewicza 11, 30-348 Kraków (Poland); Kakabakos, Sotirios [Institute of Nuclear & Radiological Sciences & Technology, Energy & Safety, NCSR Demokritos, P. Grigoriou & Neapoleos St, Aghia Paraksevi 15310, Athens (Greece); Haasnoot, Willem [RIKILT Wageningen UR, Akkermaalsbos 2, 6708 WB Wageningen (Netherlands); Bernasik, Andrzej [Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, Mickiewicza 30, 30-059 Kraków (Poland); Academic Centre for Materials and Nanotechnology, AGH University of Science and Technology, Mickiewicza 30, 30-059 Kraków (Poland); Rysz, Jakub [M. Smoluchowski Institute of Physics, Jagiellonian University, Łojasiewicza 11, 30-348 Kraków (Poland); Marzec, Mateusz M. [Academic Centre for Materials and Nanotechnology, AGH University of Science and Technology, Mickiewicza 30, 30-059 Kraków (Poland); Misiakos, Konstantinos; Raptis, Ioannis [Department of Microelectronics, Institute of Nanoscience and Nanotechnology, NCSR Demokritos, P. Grigoriou & Neapoleos St, Aghia Paraksevi 15310, Athens (Greece); Budkowski, Andrzej [M. Smoluchowski Institute of Physics, Jagiellonian University, Łojasiewicza 11, 30-348 Kraków (Poland)

    2016-11-01

    Highlights: • Optimization of probe immobilization with robotic spotter printing overlapping spots. • In-situ inspection of microstructured surfaces of biosensors integrated on silicon. • Imaging and chemical analysis of immobilization, surface blocking and immunoreaction. • Insight with molecular discrimination into step-by-step sensor surface modifications. • Optimized biofunctionalization improves sensor sensitivity and response repeatability. - Abstract: Time-of-flight secondary ion mass spectrometry (imaging, micro-analysis) has been employed to evaluate biofunctionalization of the sensing arm areas of Mach-Zehnder interferometers monolithically integrated on silicon chips for the immunochemical (competitive) detection of bovine κ-casein in goat milk. Biosensor surfaces are examined after: modification with (3-aminopropyl)triethoxysilane, application of multiple overlapping spots of κ-casein solutions, blocking with 100-times diluted goat milk, and reaction with monoclonal mouse anti-κ-casein antibodies in blocking solution. The areas spotted with κ-casein solutions of different concentrations are examined and optimum concentration providing homogeneous coverage is determined. Coverage of biosensor surfaces with biomolecules after each of the sequential steps employed in immunodetection is also evaluated with TOF-SIMS, supplemented by Atomic force microscopy and X-ray photoelectron spectroscopy. Uniform molecular distributions are observed on the sensing arm areas after spotting with optimum κ-casein concentration, blocking and immunoreaction. The corresponding biomolecular compositions are determined with a Principal Component Analysis that distinguished between protein amino acids and milk glycerides, as well as between amino acids characteristic for Mabs and κ-casein, respectively. Use of the optimum conditions (κ-casein concentration) for functionalization of chips with arrays of ten Mach-Zehnder interferometers provided on-chips assays

  19. An application of ultrasonic phased array imaging in electron beam welding inspection

    Institute of Scientific and Technical Information of China (English)

    周琦; 刘方军; 李志军; 李旭东; 齐铂金

    2002-01-01

    The basic principle and features of ultrasonic phased array imaging are discussed in this paper. Through the ultrasonic phased array technology, the electron beam welding defects and frozen keyholes characterization and imaging were realized. The ultrasonic phased array technology can detect kinds of defects in electron beam welding (EBW) quickly and easily.

  20. The HADDOCK web server for data-driven biomolecular docking

    NARCIS (Netherlands)

    de Vries, S.J.; van Dijk, M.; Bonvin, A.M.J.J.

    2010-01-01

    Computational docking is the prediction or modeling of the three-dimensional structure of a biomolecular complex, starting from the structures of the individual molecules in their free, unbound form. HADDOC K is a popular docking program that takes a datadriven approach to docking, with support for

  1. Transient response characteristics in a biomolecular integral controller.

    Science.gov (United States)

    Sen, Shaunak

    2016-04-01

    The cellular behaviour of perfect adaptation is achieved through the use of an integral control element in the underlying biomolecular circuit. It is generally unclear how integral action affects the important aspect of transient response in these biomolecular systems, especially in light of the fact that it typically deteriorates the transient response in engineering contexts. To address this issue, the authors investigated the transient response in a computational model of a simple biomolecular integral control system involved in bacterial signalling. They find that the transient response can actually speed up as the integral gain parameter increases. On further analysis, they find that the underlying dynamics are composed of slow and fast modes and the speed-up of the transient response is because of the speed-up of the slow-mode dynamics. Finally, they note how an increase in the integral gain parameter also leads to a decrease in the amplitude of the transient response, consistent with the overall improvement in the transient response. These results should be useful in understanding the overall effect of integral action on system dynamics, particularly for biomolecular systems.

  2. Exposing biomolecular properties one molecule at a time

    NARCIS (Netherlands)

    Elmalk, Abdalmohsen

    2012-01-01

    The work described in this thesis was aimed at the study of the functional properties of (isolated and purified) biomolecular systems at the single-molecule level. Two prerequisites are essential for successfully achieving this goal. First of all, single biomolecules should be observable, which mean

  3. From dynamics to structure and function of model biomolecular systems

    NARCIS (Netherlands)

    Fontaine-Vive-Curtaz, F.

    2007-01-01

    The purpose of this thesis was to extend recent works on structure and dynamics of hydrogen bonded crystals to model biomolecular systems and biological processes. The tools that we have used are neutron scattering (NS) and density functional theory (DFT) and force field (FF) based simulation method

  4. Biomolecular recognition mechanisms studied by NMR spectroscopy and MD simulations

    NARCIS (Netherlands)

    Hsu, Shang-Te Danny

    2004-01-01

    This thesis describes the use of solution Nuclear Magnetic Resonance (NMR) spectroscopy and Molecular Dynamics (MD) simulations to study the mechanism of biomolecular recognition with two model systems: i) lipid II-binding lantibiotics (lanthionine-containing antibiotics) and ii) the human immunodef

  5. Applications of LaBr3(Ce) Gamma-ray Spectrometer Arrays for Nuclear Spectroscopy and Radionuclide Assay

    Science.gov (United States)

    Regan, PH; Shearman, R.; Daniel, T.; Lorusso, G.; Collins, SM; Judge, SM; Bell; Pearce, AK; Gurgi, LA; Rudigier, M.; Podolyák, Zs; Mărginean, N.; Mărginean, R.; Kisyov, S.

    2016-10-01

    An overview of the use of discrete energy gamma-ray detectors based on cerium- doped LaBr3 scintillators for use in nuclear spectroscopy is presented. This review includes recent applications of such detectors in mixed, 'hybrid' gamma-ray coincidence detection arrays such ROSPHERE at IFIN-HH, Bucharest; EXILL+FATIMA at ILL Grenoble, France; GAMMASPHERE+FATIMA at Argonne National Laboratory, USA; FATIMA + EURICA, at RIKEN, Japan; and the National Nuclear Array (NANA) at the UK's National Physical Laboratory. This conference paper highlights the capabilities and limitations of using these sub-nanosecond 'fast-timing', medium-resolution gamma-ray detectors for both nuclear structure research and radionuclide standardisation. Potential future application of such coincidence scintillator arrays in measurements of civilian nuclear fuel waste evaluation and assay is demonstrated using coincidence spectroscopy of a mixed 134,7Cs source.

  6. Interacting with the biomolecular solvent accessible surface via a haptic feedback device

    Directory of Open Access Journals (Sweden)

    Hayward Steven

    2009-10-01

    Full Text Available Abstract Background From the 1950s computer based renderings of molecules have been produced to aid researchers in their understanding of biomolecular structure and function. A major consideration for any molecular graphics software is the ability to visualise the three dimensional structure of the molecule. Traditionally, this was accomplished via stereoscopic pairs of images and later realised with three dimensional display technologies. Using a haptic feedback device in combination with molecular graphics has the potential to enhance three dimensional visualisation. Although haptic feedback devices have been used to feel the interaction forces during molecular docking they have not been used explicitly as an aid to visualisation. Results A haptic rendering application for biomolecular visualisation has been developed that allows the user to gain three-dimensional awareness of the shape of a biomolecule. By using a water molecule as the probe, modelled as an oxygen atom having hard-sphere interactions with the biomolecule, the process of exploration has the further benefit of being able to determine regions on the molecular surface that are accessible to the solvent. This gives insight into how awkward it is for a water molecule to gain access to or escape from channels and cavities, indicating possible entropic bottlenecks. In the case of liver alcohol dehydrogenase bound to the inhibitor SAD, it was found that there is a channel just wide enough for a single water molecule to pass through. Placing the probe coincident with crystallographic water molecules suggests that they are sometimes located within small pockets that provide a sterically stable environment irrespective of hydrogen bonding considerations. Conclusion By using the software, named HaptiMol ISAS (available from http://www.haptimol.co.uk, one can explore the accessible surface of biomolecules using a three-dimensional input device to gain insights into the shape and water

  7. CoNi(2)S(4) nanosheet arrays supported on nickel foams with ultrahigh capacitance for aqueous asymmetric supercapacitor applications.

    Science.gov (United States)

    Hu, Wei; Chen, Ruqi; Xie, Wei; Zou, Lilan; Qin, Ni; Bao, Dinghua

    2014-11-12

    We report that CoNi2S4 nanosheet arrays exhibit ultrahigh specific capacitance of 2906 F g(-1) and areal capacitance of 6.39 F cm(-2) at a current density of 5 mA cm(-2), as well as good rate capability and cycling stability, and superior electrochemical performances with an energy density of 33.9 Wh kg(-1) at a power density of 409 W kg(-1) have been achieved in an assembled aqueous asymmetric supercapacitor. The CoNi2S4 nanosheet arrays were in situ grown on nickel foams by a facile two-step hydrothermal method. The formation mechanism of the CoNi2S4 nanosheet arrays was based on an anion-exchange reaction involving the pseudo Kirkendall effect. The two aqueous asymmetric supercapacitors in series using the CoNi2S4 nanosheet arrays as the positive electrodes can power four 3-mm-diameter red-light-emitting diodes. The outstanding supercapacitive performance of CoNi2S4 nanosheet arrays can be attributed to ravine-like nanosheet architectures with good mechanical and electrical contact, low crystallinity and good wettability without an annealing process, rich redox reactions, as well as high conductivity and transport rate for both electrolyte ions and electrons. Our results demonstrate that CoNi2S4 nanosheet arrays are promising electrode materials for supercapacitor applications.

  8. Biomolecular detection at ssDNA-conjugated nanoparticles by nano-impact electrochemistry.

    Science.gov (United States)

    Karimi, Anahita; Hayat, Akhtar; Andreescu, Silvana

    2017-01-15

    We describe the use of ssDNA functionalized silver nanoparticle (AgNP) probes for quantitative investigation of biorecognition and real time detection of biomolecular targets using nano-impact electrochemistry. The method is based on measurements of the individual collision events between ssDNA aptamer-functionalized AgNPs and a carbon fiber miroelectrode (CFME). Specific binding events of target analyte induced collision frequency changes enabling ultrasensitive detection of the aptamer target in a single step. These changes are assigned to the surface coverage of the NP by the ssDNA aptamers and subsequent conformational changes of the aptamer probe which affect the electron transfer between the NP and the electrode surface. The method enables sensitive and selective detection of ochratoxin A (OTA), chosen here as a model target, with a limit of detection of 0.05nM and a relative standard deviation of 4.9%. The study provides a means of characterizing bioconjugation of AgNPs with aptamers and assessing biomolecular recognition events with high sensitivity and without the use of exogenous reagents or enzyme amplification steps. This methodology can be broadly applicable to other bioconjugated systems, biosensing and related bioanalytical applications.

  9. An L-Band, Circularly Polarised, Dual-Feed, Cavity-Backed Annular Slot Antenna For Phased-Array Applications

    DEFF Research Database (Denmark)

    Larsen, Niels Vesterdal; Breinbjerg, Olav

    2006-01-01

    The results of a parametric study for the development of an L-band, circularly polarised, dual-feed, cavity-backed annular slot antenna is presented. The study included detailed numerical simulations and measurements on a prototype with different ground planes, to assess the antenna’s applicability...... as an element in a small phased array antenna....

  10. Real-Time, Label-Free Detection of Biomolecular Interactions in Sandwich Assays by the Oblique-Incidence Reflectivity Difference Technique

    Directory of Open Access Journals (Sweden)

    Yung-Shin Sun

    2014-12-01

    Full Text Available One of the most important goals in proteomics is to detect the real-time kinetics of diverse biomolecular interactions. Fluorescence, which requires extrinsic tags, is a commonly and widely used method because of its high convenience and sensitivity. However, in order to maintain the conformational and functional integrality of biomolecules, label-free detection methods are highly under demand. We have developed the oblique-incidence reflectivity difference (OI-RD technique for label-free, kinetic measurements of protein-biomolecule interactions. Incorporating the total internal refection geometry into the OI-RD technique, we are able to detect as low as 0.1% of a protein monolayer, and this sensitivity is comparable with other label-free techniques such as surface plasmon resonance (SPR. The unique advantage of OI-RD over SPR is no need for dielectric layers. Moreover, using a photodiode array as the detector enables multi-channel detection and also eliminates the over-time signal drift. In this paper, we demonstrate the applicability and feasibility of the OI-RD technique by measuring the kinetics of protein-protein and protein-small molecule interactions in sandwich assays.

  11. Engineering intracellular active transport systems as in vivo biomolecular tools.

    Energy Technology Data Exchange (ETDEWEB)

    Bachand, George David; Carroll-Portillo, Amanda

    2006-11-01

    Active transport systems provide essential functions in terms of cell physiology and metastasis. These systems, however, are also co-opted by invading viruses, enabling directed transport of the virus to and from the cell's nucleus (i.e., the site of virus replication). Based on this concept, fundamentally new approaches for interrogating and manipulating the inner workings of living cells may be achievable by co-opting Nature's active transport systems as an in vivo biomolecular tool. The overall goal of this project was to investigate the ability to engineer kinesin-based transport systems for in vivo applications, specifically the collection of effector proteins (e.g., transcriptional regulators) within single cells. In the first part of this project, a chimeric fusion protein consisting of kinesin and a single chain variable fragment (scFv) of an antibody was successfully produced through a recombinant expression system. The kinesin-scFv retained both catalytic and antigenic functionality, enabling selective capture and transport of target antigens. The incorporation of a rabbit IgG-specific scFv into the kinesin established a generalized system for functionalizing kinesin with a wide range of target-selective antibodies raised in rabbits. The second objective was to develop methods of isolating the intact microtubule network from live cells as a platform for evaluating kinesin-based transport within the cytoskeletal architecture of a cell. Successful isolation of intact microtubule networks from two distinct cell types was demonstrated using glutaraldehyde and methanol fixation methods. This work provides a platform for inferring the ability of kinesin-scFv to function in vivo, and may also serve as a three-dimensional scaffold for evaluating and exploiting kinesin-based transport for nanotechnological applications. Overall, the technology developed in this project represents a first-step in engineering active transport system for in vivo

  12. Biomolecular transport and separation in nanotubular networks.

    Energy Technology Data Exchange (ETDEWEB)

    Stachowiak, Jeanne C.; Stevens, Mark Jackson (Sandia National Laboratories, Albuquerque, NM); Robinson, David B.; Branda, Steven S.; Zendejas, Frank; Meagher, Robert J.; Sasaki, Darryl Yoshio; Bachand, George David (Sandia National Laboratories, Albuquerque, NM); Hayden, Carl C.; Sinha, Anupama; Abate, Elisa; Wang, Julia; Carroll-Portillo, Amanda (Sandia National Laboratories, Albuquerque, NM); Liu, Haiqing (Sandia National Laboratories, Albuquerque, NM)

    2010-09-01

    Cell membranes are dynamic substrates that achieve a diverse array of functions through multi-scale reconfigurations. We explore the morphological changes that occur upon protein interaction to model membrane systems that induce deformation of their planar structure to yield nanotube assemblies. In the two examples shown in this report we will describe the use of membrane adhesion and particle trajectory to form lipid nanotubes via mechanical stretching, and protein adsorption onto domains and the induction of membrane curvature through steric pressure. Through this work the relationship between membrane bending rigidity, protein affinity, and line tension of phase separated structures were examined and their relationship in biological membranes explored.

  13. Mass-sensing BioCD Protein Array towards Clinical Application: Prostate Specific Antigen Detection in Patient Sera

    CERN Document Server

    Wang, Xuefeng; Nolte, David D; Ratliff, Timothy L

    2009-01-01

    Mass-sensing biosensor arrays for protein detection require no fluorophores or enzyme labels. However, few mass biosensor protein arrays have demonstrated successful application in high background samples, such as serum. In this paper, we test the BioCD as a mass biosensor based on optical interferometry of antibodies covalently attached through Schiff-base reduction. We use the BioCD to detect prostate specific antigen (PSA, a biomarker of prostate cancer) in patient sera in a 96-well anti-PSA microarray. We have attained a 4 ng/ml detection limit in full serum and have measured PSA concentrations in three patient sera.

  14. Fabrication of large NbSi bolometer arrays for CMB applications

    Energy Technology Data Exchange (ETDEWEB)

    Ukibe, M. [AIST, Tsukuba Central 2, Tsukuba, Ibaraki 305-8568 (Japan); CNRS-CSNSM, Bat 104, Orsay Campus F-91405 (France); Belier, B. [CNRS-IEF, Bat 220, Orsay Campus F-91405 (France); Camus, Ph. [CNRS-CRTBT, 25 avenue des Martyrs, Grenoble F-38042 (France)]. E-mail: philippe.camus@grenoble.cnrs.fr; Dobrea, C. [CNRS-CSNSM, Bat 104, Orsay Campus F-91405 (France); Dumoulin, L. [CNRS-CSNSM, Bat 104, Orsay Campus F-91405 (France); Fernandez, B. [CNRS-CRTBT, 25 avenue des Martyrs, Grenoble F-38042 (France); Fournier, T. [CNRS-CRTBT, 25 avenue des Martyrs, Grenoble F-38042 (France); Guillaudin, O. [CNRS-LPSC, 53 avenue des Martyrs, Grenoble F-38042 (France); Marnieros, S. [CNRS-CSNSM, Bat 104, Orsay Campus F-91405 (France); Yates, S.J.C. [CNRS-CSNSM, Bat 104, Orsay Campus F-91405 (France)

    2006-04-15

    Future cosmic microwave background experiments for high-resolution anisotropy mapping and polarisation detection require large arrays of bolometers at low temperature. We have developed a process to build arrays of antenna-coupled bolometers for that purpose. With adjustment of the Nb{sub x}Si{sub 1-x} alloy composition, the array can be made of high impedance or superconductive (TES) sensors.

  15. Application of Array-Based Comparative Genomic Hybridization to Pediatric Neurologic Diseases

    OpenAIRE

    2013-01-01

    Purpose Array comparative genomic hybridization (array-CGH) is a technique used to analyze quantitative increase or decrease of chromosomes by competitive DNA hybridization of patients and controls. This study aimed to evaluate the benefits and yield of array-CGH in comparison with conventional karyotyping in pediatric neurology patients. Materials and Methods We included 87 patients from the pediatric neurology clinic with at least one of the following features: developmental delay, mental r...

  16. Characterization of Acousto-Electric Cluster and Array Levitation and its Application to Evaporation

    Science.gov (United States)

    Robert E. Apfel; Zheng, Yibing

    2000-01-01

    An acousto-electric levitator has been developed to study the behavior of liquid drop and solid particle clusters and arrays. Unlike an ordinary acoustic levitator that uses only a standing acoustic wave to levitate a single drop or particle, this device uses an extra electric static field and the acoustic field simultaneously to generate and levitate charged drops in two-dimensional arrays in air without any contact to a solid surface. This cluster and array generation (CAG) instrument enables us to steadily position drops and arrays to study the behavior of multiple drop and particle systems such as spray and aerosol systems relevant to the energy, environmental, and material sciences.

  17. Clinical applications of penetrating neural interfaces and Utah Electrode Array technologies

    Science.gov (United States)

    Normann, Richard A.; Fernandez, Eduardo

    2016-12-01

    This paper briefly describes some of the recent progress in the development of penetrating microelectrode arrays and highlights the use of two of these devices, Utah electrode arrays and Utah slanted electrode arrays, in two therapeutic interventions: recording volitional skeletal motor commands from the central nervous system, and recording motor commands and evoking somatosensory percepts in the peripheral nervous system (PNS). The paper also briefly explores other potential sites for microelectrode array interventions that could be profitably pursued and that could have important consequences in enhancing the quality of life of patients that has been compromised by disorders of the central and PNSs.

  18. Design, testing, and economics of a 430 W sub p photovoltaic concentrator array for non grid-connected applications

    Science.gov (United States)

    Maish, A. B.; Rios, M., Jr.; Togami, H.

    A stand-alone 430 W/sub p/ photovoltaic (PV) concentrating system for low power, non grid-connected applications has been designed, fabricated, and tested at Sandia National Laboratories. The array consists of four passively cooled Fresnel lens concentrating modules on a newly developed polar axis tracking structure. Two axis tracking is provided using a self powered clock drive unit mounted on a single post foundation. Test results of tracking accuracy, array output power, parasitic power, performance in winds and array reliability are discussed. using a range of estimated production costs for small production volumes, the life-cycle energy costs have been calculated and compared to the equivalent energy costs of a 3 kW diesel electric generator set and of an equivalent flat panel PV system.

  19. fireball/amber: An Efficient Local-Orbital DFT QM/MM Method for Biomolecular Systems.

    Science.gov (United States)

    Mendieta-Moreno, Jesús I; Walker, Ross C; Lewis, James P; Gómez-Puertas, Paulino; Mendieta, Jesús; Ortega, José

    2014-05-13

    In recent years, quantum mechanics/molecular mechanics (QM/MM) methods have become an important computational tool for the study of chemical reactions and other processes in biomolecular systems. In the QM/MM technique, the active region is described by means of QM calculations, while the remainder of the system is described using a MM approach. Because of the complexity of biomolecules and the desire to achieve converged sampling, it is important that the QM method presents a good balance between accuracy and computational efficiency. Here, we report on the implementation of a QM/MM technique that combines a DFT approach specially designed for the study of complex systems using first-principles molecular dynamics simulations (fireball) with the amber force fields and simulation programs. We also present examples of the application of this QM/MM approach to three representative biomolecular systems: the analysis of the effect of electrostatic embedding in the behavior of a salt bridge between an aspartic acid and a lysine residue, a study of the intermediate states for the triosephosphate isomerase catalyzed conversion of dihydroxyacetone phosphate into glyceraldehyde 3-phosphate, and the detailed description, using DFT QM/MM molecular dynamics, of the cleavage of a phosphodiester bond in RNA catalyzed by the enzyme RNase A.

  20. The interplay of intrinsic and extrinsic bounded noises in biomolecular networks.

    Directory of Open Access Journals (Sweden)

    Giulio Caravagna

    Full Text Available After being considered as a nuisance to be filtered out, it became recently clear that biochemical noise plays a complex role, often fully functional, for a biomolecular network. The influence of intrinsic and extrinsic noises on biomolecular networks has intensively been investigated in last ten years, though contributions on the co-presence of both are sparse. Extrinsic noise is usually modeled as an unbounded white or colored gaussian stochastic process, even though realistic stochastic perturbations are clearly bounded. In this paper we consider Gillespie-like stochastic models of nonlinear networks, i.e. the intrinsic noise, where the model jump rates are affected by colored bounded extrinsic noises synthesized by a suitable biochemical state-dependent Langevin system. These systems are described by a master equation, and a simulation algorithm to analyze them is derived. This new modeling paradigm should enlarge the class of systems amenable at modeling. We investigated the influence of both amplitude and autocorrelation time of a extrinsic Sine-Wiener noise on: (i the Michaelis-Menten approximation of noisy enzymatic reactions, which we show to be applicable also in co-presence of both intrinsic and extrinsic noise, (ii a model of enzymatic futile cycle and (iii a genetic toggle switch. In (ii and (iii we show that the presence of a bounded extrinsic noise induces qualitative modifications in the probability densities of the involved chemicals, where new modes emerge, thus suggesting the possible functional role of bounded noises.

  1. Combining vibrational biomolecular spectroscopy with chemometric techniques for the study of response and sensitivity of molecular structures/functional groups mainly related to lipid biopolymer to various processing applications.

    Science.gov (United States)

    Yu, Gloria Qingyu; Yu, Peiqiang

    2015-09-01

    The objectives of this project were to (1) combine vibrational spectroscopy with chemometric multivariate techniques to determine the effect of processing applications on molecular structural changes of lipid biopolymer that mainly related to functional groups in green- and yellow-type Crop Development Centre (CDC) pea varieties [CDC strike (green-type) vs. CDC meadow (yellow-type)] that occurred during various processing applications; (2) relatively quantify the effect of processing applications on the antisymmetric CH3 ("CH3as") and CH2 ("CH2as") (ca. 2960 and 2923 cm(-1), respectively), symmetric CH3 ("CH3s") and CH2 ("CH2s") (ca. 2873 and 2954 cm(-1), respectively) functional groups and carbonyl C=O ester (ca. 1745 cm(-1)) spectral intensities as well as their ratios of antisymmetric CH3 to antisymmetric CH2 (ratio of CH3as to CH2as), ratios of symmetric CH3 to symmetric CH2 (ratio of CH3s to CH2s), and ratios of carbonyl C=O ester peak area to total CH peak area (ratio of C=O ester to CH); and (3) illustrate non-invasive techniques to detect the sensitivity of individual molecular functional group to the various processing applications in the recently developed different types of pea varieties. The hypothesis of this research was that processing applications modified the molecular structure profiles in the processed products as opposed to original unprocessed pea seeds. The results showed that the different processing methods had different impacts on lipid molecular functional groups. Different lipid functional groups had different sensitivity to various heat processing applications. These changes were detected by advanced molecular spectroscopy with chemometric techniques which may be highly related to lipid utilization and availability. The multivariate molecular spectral analyses, cluster analysis, and principal component analysis of original spectra (without spectral parameterization) are unable to fully distinguish the structural differences in the

  2. Toward an active passive waveguide array for lower hybrid application on ITER

    Energy Technology Data Exchange (ETDEWEB)

    Mirizzi, F.; Gourlan, C.; Marra, A.; Roccon, M.; Tuccillo, A.A. [ENEA, Frascati (Italy); Bibet, P.; Froissard, P.; Goniche, M.; Kazarian, F.; Mailloux, J.; Rey, G.; Simoncini, J. [Association Euratom-CEA Cadarache, 13 - Saint-Paul-lez-Durance (France). Dept. de Recherches sur la Fusion Controlee

    1998-07-01

    Toward the realization of Advanced Tokamak scenarios on ITER, Lower Hybrid Wave is an efficient way to drive the current especially in the region of low to medium temperature of the discharge, leading therefore to hollow current profile with the possibility of improved confinement. The amount of power necessary to fulfill the task is estimated around 50 MW, that meansthousands of waveguides with the present design of the antenna. The thermal load on ITER, that is 0.5 MW/m{sup 2} and 10 MW/m{sup 3}, for neutron heating, calls for a very efficient water cooling at the mouth of the antenna. A new concept of launcher, made of an array of active and passive waveguides fed by multijunction, has been proposed to satisfy these constraints: the Passive-Active Multijunction (PAM) antenna. The aim of the work is to validate the PAM conceptual design for future applications on ITER like machine. In the first step of the collaboration the numerical analysis performed on this specific antenna has allowed to define the microwave design of the structure. A PAM module has been designed that, despite the small dimension of the FTU ports, can inject the required power spectra with good directivity and coupling for all the studied experimental conditions. Moreover the foreseen experimental situation on FTU will allow for direct comparison with traditional grill injecting spectra with same N{sub //peak} on the machine at the same time. (author)

  3. Metal capped polystyrene nanotubes arrays as super-hydrophobic substrates for SERS applications

    Science.gov (United States)

    Lovera, Pierre; Creedon, Niamh; Alatawi, Hanan; O'Riordan, Alan

    2014-05-01

    We present a low-cost and rapid fabrication and characterisations of polymer nanotubes based substrates inspired by a Gecko's foot, and demonstrate its suitability for Surface Enhanced Raman Scattering (SERS) applications. Substrates are fabricated in a simple, scalable and cost efficient way by melt wetting of polystyrene (PS) in an anodised alumina (AAO) template, followed by silver or gold evaporation. Scanning electron microscopy reveals the substrates are composed of a dense array of free-standing polystyrene nanotubes topped by silver nanocaps. The gaps (electromagnetic hot spots) between adjacent nanotubes are measured to be 30nm +/-15nm. SERS characterisation of the substrates, employing a monolayer of 4-aminothiophenol (4-ABT) as a model molecule, exhibits an enhancement factor of ~1.6 × 106. This value is consistent with the one obtained from 3D-Finite Difference Time Domain (3D-FDTD) simulations of a simplified version of the sample. The contact angle of the substrates is measured to be 150°, making them super-hydrophobic. This later property renders the samples compatible to very low sample volumes and highly sensitive detection (down to 408ppt) of the environmental pollutant crystal violet in water is demonstrated.

  4. Application of Hybrid Optimization Algorithm in the Synthesis of Linear Antenna Array

    Directory of Open Access Journals (Sweden)

    Ezgi Deniz Ülker

    2014-01-01

    Full Text Available The use of hybrid algorithms for solving real-world optimization problems has become popular since their solution quality can be made better than the algorithms that form them by combining their desirable features. The newly proposed hybrid method which is called Hybrid Differential, Particle, and Harmony (HDPH algorithm is different from the other hybrid forms since it uses all features of merged algorithms in order to perform efficiently for a wide variety of problems. In the proposed algorithm the control parameters are randomized which makes its implementation easy and provides a fast response. This paper describes the application of HDPH algorithm to linear antenna array synthesis. The results obtained with the HDPH algorithm are compared with three merged optimization techniques that are used in HDPH. The comparison shows that the performance of the proposed algorithm is comparatively better in both solution quality and robustness. The proposed hybrid algorithm HDPH can be an efficient candidate for real-time optimization problems since it yields reliable performance at all times when it gets executed.

  5. Development and application of functional gene arrays for microbial community analysis

    Institute of Scientific and Technical Information of China (English)

    Z.L.HE; J.D.VAN NOSTRAND; L.Y.WU; J.Z.ZHOU

    2008-01-01

    Functional gene markers can provide important information about functional gene diversity and potential activity of microbial communities.Although microarray technology has been successfully applied to study gene expression for pure cultures,simple,and artificial microbial communities,adapting such a technology to analyze complex microbial communities still presents a lot of challenges in terms of design,sample preparation,and data analysis.This work is focused on the development and application of functional gene arrays (FGAs) to target key functional gene markers for microbial community studies.A few key issues specifically related to FGAs,such as oligonucleotide probe design,nucleic acid extraction and purification,data analysis,specificity,sensitivity,and quantitative capability are discussed in detail.Recent studies have demonstrated that FGAs can provide specific,sensitive,and potentially quantitative information about microbial communities from a variety of natural environments and controlled ecosystems.This technology is expected to revolutionize the analysis of microbial communities,and link microbial structure to ecosystem functioning.

  6. Optimized high-power diode laser, laser arrays, and bars for pump applications

    Science.gov (United States)

    Hülsewede, R.; Schulze, H.; Sebastian, J.; Schröder, D.; Meusel, J.; Wolf, J.; Hennig, P.

    2009-02-01

    Broad area diode laser and diode laser bars are the most efficient light sources. In comparison to solid state laser or gas laser systems the over all beam quality of the diode laser is poor. Thus most application of diode laser bars is high efficient pumping of solid state lasers converting the beam quality and scaling the power of laser systems within the kW range. The pump efficiency and the beam coupling efficiency of the diode laser pumped systems has to be increased to meet the increasing laser market demands for reduced costs. JENOPTIK Diode Lab GmbH (JDL) has optimized their high power brilliance bars to enable reliable high power operation especially, for the 9xx nm wavelength range and low far field divergences. Superior reliability with long operation time of 13,000 hours and high power operation of 200 W are demonstrated for high power bars high filling factor mounted on passively cooled heat sinks. Smaller far field divergence at high power levels requires longer cavity length and higher efficiencies in the beam coupling needs requires lower filling factors. The new high brilliance bars and arrays with 20% filling factor are showing high power operation up to 95 W and a slow axis beam divergence of less than 8° (95% power content).

  7. Novel low cost fabrication of microneedle arrays for drug delivery applications

    Science.gov (United States)

    Tan, Pei Ying J.; Xu, Yuan; Chew, Yong T.; Li, Zongli; Kong, Yen P.

    2002-11-01

    This paper reports a process used for the microfabrication of an array of hollow microneedles. The purpose of the array is for painless transdermal drug delivery. The fabrication process uses wet bulk silicon technology and copper electroplating technology. First, a microneedle array mold on -oriented silicon was fabricated by wet anisotropic etching using KOH solution, then the silicon mold was electroplated with copper. After which, the hollow copper microneedle array was released by a lift-off process or by etching off the silicon mold in KOH solution. The hollow copper microneedle array has been mounted on a polycarbonate platform, which consist of laser ablated cavities and channel for external connection to drug source. In consideration of the contour of human"s skin and the geometry of the microneedle tip, which has walls of sloping gradient corresponding to the (111)-planes, the height of the microneedle array is 200 μm. Two arrays of hollow copper microneedle were fabricated. They have square base of dimensions 390 μm and 400 μm and square tips of size 100 μm and 120 μm with square holes of size 88 μm and 94 μm respectively. Both arrays have microneedle tips at 1900 μm apart from one another and consist of 10 × 10 microneedle tips.

  8. Application of different spatial sampling patterns for sparse-array transducer design

    DEFF Research Database (Denmark)

    Nikolov, Svetoslav; Jensen, Jørgen Arendt

    2000-01-01

    , and then transfered to a 2D rectangulargrid. In this paper 5 different 2D array transducers have been considered and their performance was compared with respect to spatial and contrast resolution. An optimization of the element placement along the diagonals using vernier arrays is suggested. The simulation results...

  9. Physics at the biomolecular interface fundamentals for molecular targeted therapy

    CERN Document Server

    Fernández, Ariel

    2016-01-01

    This book focuses primarily on the role of interfacial forces in understanding biological phenomena at the molecular scale. By providing a suitable statistical mechanical apparatus to handle the biomolecular interface, the book becomes uniquely positioned to address core problems in molecular biophysics. It highlights the importance of interfacial tension in delineating a solution to the protein folding problem, in unravelling the physico-chemical basis of enzyme catalysis and protein associations, and in rationally designing molecular targeted therapies. Thus grounded in fundamental science, the book develops a powerful technological platform for drug discovery, while it is set to inspire scientists at any level in their careers determined to address the major challenges in molecular biophysics. The acknowledgment of how exquisitely the structure and dynamics of proteins and their aqueous environment are related attests to the overdue recognition that biomolecular phenomena cannot be effectively understood w...

  10. Single-Molecule Pull-down FRET (SiMPull-FRET) to dissect the mechanisms of biomolecular machines

    Science.gov (United States)

    Kahlscheuer, Matthew L.; Widom, Julia; Walter, Nils G.

    2016-01-01

    Spliceosomes are multi-megadalton RNA-protein complexes responsible for the faithful removal of non-coding segments (introns) from pre-messenger RNAs (pre-mRNAs), a process critical for the maturation of eukaryotic mRNAs for subsequent translation by the ribosome. Both the spliceosome and ribosome, as well as many other RNA and DNA processing machineries, contain central RNA components that endow biomolecular complexes with precise, sequence-specific nucleic acid recognition and versatile structural dynamics. Single molecule fluorescence (or Förster) resonance energy transfer (smFRET) microscopy is a powerful tool for the study of local and global conformational changes of both simple and complex biomolecular systems involving RNA. The integration of biochemical tools such as immunoprecipitation with advanced methods in smFRET microscopy and data analysis has opened up entirely new avenues towards studying the mechanisms of biomolecular machines isolated directly from complex biological specimens such as cell extracts. Here we detail the general steps for using prism-based total internal reflection fluorescence (TIRF) microscopy in exemplary single molecule pull-down FRET (SiMPull-FRET) studies of the yeast spliceosome and discuss the broad application potential of this technique. PMID:26068753

  11. Quantum dynamics of bio-molecular systems in noisy environments

    OpenAIRE

    Huelga S.F.; Plenio M.B.

    2012-01-01

    We discuss three different aspects of the quantum dynamics of bio-molecular systems and more generally complex networks in the presence of strongly coupled environments. Firstly, we make a case for the systematic study of fundamental structural elements underlying the quantum dynamics of these systems, identify such elements and explore the resulting interplay of quantum dynamics and environmental decoherence. Secondly, we critically examine some existing approaches to the numerical descripti...

  12. Retroactivity in the Context of Modularly Structured Biomolecular Systems

    Science.gov (United States)

    Pantoja-Hernández, Libertad; Martínez-García, Juan Carlos

    2015-01-01

    Synthetic biology has intensively promoted the technical implementation of modular strategies in the fabrication of biological devices. Modules are considered as networks of reactions. The behavior displayed by biomolecular systems results from the information processes carried out by the interconnection of the involved modules. However, in natural systems, module wiring is not a free-of-charge process; as a consequence of interconnection, a reactive phenomenon called retroactivity emerges. This phenomenon is characterized by signals that propagate from downstream modules (the modules that receive the incoming signals upon interconnection) to upstream ones (the modules that send the signals upon interconnection). Such retroactivity signals, depending of their strength, may change and sometimes even disrupt the behavior of modular biomolecular systems. Thus, analysis of retroactivity effects in natural biological and biosynthetic systems is crucial to achieve a deeper understanding of how this interconnection between functionally characterized modules takes place and how it impacts the overall behavior of the involved cell. By discussing the modules interconnection in natural and synthetic biomolecular systems, we propose that such systems should be considered as quasi-modular. PMID:26137457

  13. Dense nanoimprinted silicon nanowire arrays with passivated axial p-i-n junctions for photovoltaic applications

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Peng; Liu, Pei; Siontas, Stylianos; Zaslavsky, A.; Pacifici, D. [Department of Physics and School of Engineering, Brown University, Providence, Rhode Island 02912 (United States); Ha, Jong-Yoon; Krylyuk, S. [Institute for Research in Electronics and Applied Physics, University of Maryland, College Park, Maryland 20742 (United States); Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, Maryland 20899 (United States); Davydov, A. V. [Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, Maryland 20899 (United States)

    2015-03-28

    We report on the fabrication and photovoltaic characteristics of vertical arrays of silicon axial p-i-n junction nanowire (NW) solar cells grown by vapor-liquid-solid (VLS) epitaxy. NW surface passivation with silicon dioxide shell is shown to enhance carrier recombination time, open-circuit voltage (V{sub OC}), short-circuit current density (J{sub SC}), and fill factor (FF). The photovoltaic performance of passivated individual NW and NW arrays was compared under 532 nm laser illumination with power density of ∼10 W/cm{sup 2}. Higher values of V{sub OC} and FF in the NW arrays are explained by enhanced light trapping. In order to verify the effect of NW density on light absorption and hence on the photovoltaic performance of NW arrays, dense Si NW arrays were fabricated using nanoimprint lithography to periodically arrange the gold seed particles prior to epitaxial growth. Compared to sparse NW arrays fabricated using VLS growth from randomly distributed gold seeds, the nanoimprinted NW array solar cells show a greatly increased peak external quantum efficiency of ∼8% and internal quantum efficiency of ∼90% in the visible spectral range. Three-dimensional finite-difference time-domain simulations of Si NW periodic arrays with varying pitch (P) confirm the importance of high NW density. Specifically, due to diffractive scattering and light trapping, absorption efficiency close to 100% in the 400–650 nm spectral range is calculated for a Si NW array with P = 250 nm, significantly outperforming a blanket Si film of the same thickness.

  14. WO{sub 3} thin film based multiple sensor array for electronic nose application

    Energy Technology Data Exchange (ETDEWEB)

    Ramgir, Niranjan S., E-mail: niranjanpr@yahoo.com, E-mail: deepakcct1991@gmail.com; Goyal, C. P.; Datta, N.; Kaur, M.; Debnath, A. K.; Aswal, D. K.; Gupta, S. K. [Thin Film Devices Section, Technical Physics Division, Bhabha Atomic Research Centre, Mumbai–400085 (India); Goyal, Deepak, E-mail: niranjanpr@yahoo.com, E-mail: deepakcct1991@gmail.com [Thin Film Devices Section, Technical Physics Division, Bhabha Atomic Research Centre, Mumbai–400085 (India); Centre for Converging Technologies, University of Rajasthan, Jaipur-302004 (India)

    2015-06-24

    Multiple sensor array comprising 16 x 2 sensing elements were realized using RF sputtered WO{sub 3} thin films. The sensor films were modified with a thin layer of sensitizers namely Au, Ni, Cu, Al, Pd, Ti, Pt. The resulting sensor array were tested for their response towards different gases namely H{sub 2}S, NH{sub 3}, NO and C{sub 2}H{sub 5}OH. The sensor response values measured from the response curves indicates that the sensor array generates a unique signature pattern (bar chart) for the gases. The sensor response values can be used to get both qualitative and quantitative information about the gas.

  15. Application of a floating point systems AP190L array processor to finite element analysis

    Energy Technology Data Exchange (ETDEWEB)

    Young, R.C.

    1982-04-01

    This report discusses the implementation of a finite element program on a Floating Point Systems AP190L array processor attached to a Univac 1182 host computer. The array processor was used to perform all calculations on the global system of linear equations including matrix assembly, matrix factoring and vector solution. A large scratch disk was attached directly to the array processor for storing the factored matrix. The remaining calculations, including data preparation, element matrix formation, stress integration and output display were performed by the host computer.

  16. Fano-resonance boosted cascaded field enhancement in a plasmonic nanoparticle-in-cavity nanoantenna array and its SERS application

    CERN Document Server

    Zhu, Zhendong; You, Oubo; Li, Qunqing; Fan, Shoushan

    2015-01-01

    Cascaded optical field enhancement (CFE) can be realized in some specially designed multiscale plasmonic nanostructures, where the generation of extremely strong field at nanoscale volume is crucial for many applications, for example, surface enhanced Raman spectroscopy (SERS). Here, we propose a strategy of realizing a high-quality plasmonic nanoparticle-in-cavity (PIC) nanoantenna array, where strong coupling between a nanoparticle dark mode with a high order nanocavity bright mode can produce Fano resonance at a target wavelength. The Fano resonance can effectively boost the CFE in the PIC, with a field enhancement factor up to 5X10^2. A cost-effective and reliable nanofabrication method is developed with room temperature nanoimprinting lithography to manufacture high-quality PIC arrays. This technique guarantees the generation of only one gold nanoparticle at the bottom of each nanocavity, which is crucial for the generation of the expected CFE. As a demonstration of the performance and application of the...

  17. Clinical applications of BAC array-CGH to the study of diffuse large B-cell lymphomas.

    Science.gov (United States)

    Robledo, Cristina; García, Juan Luis; Hernández, Jesús M

    2013-01-01

    BAC array-CGH is a powerful method to identify DNA copy number changes (gains, amplifications and deletions) on a genome-wide scale, and to map these changes to genomic sequence. It is based on the analysis of genomic DNA isolated from test and reference cell populations, the differential labelling with fluorescent dyes and the co-hybridization with a genomic array. BAC array-CGH has proven to be a specific, sensitive, and reliable technique, with considerable advantages compared to other methods used for the analysis of DNA copy number changes. The application of genome scanning technologies and the recent advances in bioinformatics tools that enable us to perform a robust and highly sensitive analysis of array-CGH data, useful not only for genome scanning of tumor cells but also in the identification of novel cancer related genes, oncogenes and suppressor genes. Cytogenetic analysis provides essential information for diagnosis and prognosis in patients with hematologic malignancies such as lymphomas. However, the chromosomal interpretation in non-Hodgkin lymphoma (NHL) is sometimes inconclusive. Copy number aberrations identified by BAC array-CGH analyses could be a complementary methodology to chromosomal analysis. In NHL the genomic imbalances might have a prognostic rather than a diagnostic value. In fact, the diagnosis of NHL is based on pathological and molecular cytogenetics data. Furthermore genetic variations and their association with specific types of lymphoma development, and elucidation of the variable genetic pathways leading to lymphoma development, are important directions for future cancer research. Array-CGH, along with FISH and PCR, will be used for routine diagnostic purposes in near future.

  18. Self-Assembled Wire Arrays and ITO Contacts for Silicon Nanowire Solar Cell Applications

    Institute of Scientific and Technical Information of China (English)

    YANG Cheng; ZHANG Gang; LEE Dae-Young; LI Hua-Min; LIM Young-Dae; Y00 Won Jong; PARK Young-Jun; KIM Jong-Min

    2011-01-01

    Self-assembly of silicon nanowire(SiNW)arrays is studied using SF6/02 plasma treatment. The self-assembly method can be applied to single- and poly-crystalline Si substrates. Plasma conditions can control the length and diameter of the SiNW arrays. Lower reflectance of the wire arrays over the wavelength range 200-1100nm is obtained. The conducting transparent indium-tin-oxide(ITO) electrode can be fully coated on the self-assembled SiNW arrays by sputtering. The ITO-coated SiNW solar cells show the same low surface light reflectance and a higher carrier collection efficiency than SiNW solar cells without ITO coating. An efficiency enhancement of around 3 times for ITO coated SiNW solar cells is demonstrated via experiments.

  19. Synthesis of ZnO nanosheet arrays with exposed (100) facets for gas sensing applications.

    Science.gov (United States)

    Xiao, Chuanhai; Yang, Tianye; Chuai, Mingyan; Xiao, Bingxin; Zhang, Mingzhe

    2016-01-01

    ZnO nanosheet (NS) arrays have been synthesized by a facile ultrathin liquid layer electrodeposition method. The ion concentration and electrode potential play important roles in the formation of ZnO NS arrays. Studies on the structural information indicate that the NSs are exposed with (100) facets. The results of Raman and PL spectra indicate that there existed a large amount of oxygen vacancies in the NSs. The gas sensing performances of the ZnO NS arrays are investigated: the ZnO NS arrays exhibited high gas selectivity and quick response/recovery for detecting NO2 at a low working temperature. High binding energies between NO2 molecules and exposed ZnO(100) facets lead to large surface reconstructions, which is responsible for the intrinsic NO2 sensing properties. In addition, the highly exposed surface and a large amount of oxygen vacancies existing in the NSs also make a great contribution to the gas sensing performance.

  20. Periodically Aligned Si Nanopillar Arrays as Efficient Antireflection Layers for Solar Cell Applications

    Directory of Open Access Journals (Sweden)

    Li Xiaocheng

    2010-01-01

    Full Text Available Abstract Periodically aligned Si nanopillar (PASiNP arrays were fabricated on Si substrate via a silver-catalyzed chemical etching process using the diameter-reduced polystyrene spheres as mask. The typical sub-wavelength structure of PASiNP arrays had excellent antireflection property with a low reflection loss of 2.84% for incident light within the wavelength range of 200–1,000 nm. The solar cell incorporated with the PASiNP arrays exhibited a power conversion efficiency (PCE of ~9.24% with a short circuit current density (JSC of ~29.5 mA/cm2 without using any extra surface passivation technique. The high PCE of PASiNP array-based solar cell was attributed to the excellent antireflection property of the special periodical Si nanostructure.

  1. Medical applications of array CGH and the transformation of clinical cytogenetics.

    Science.gov (United States)

    Shaffer, L G; Bejjani, B A

    2006-01-01

    Microarray-based comparative genomic hybridization (array CGH) merges molecular diagnostics with traditional chromosome analysis and is transforming the field of cytogenetics. Prospective studies of individuals with developmental delay and dysmorphic features have demonstrated that array CGH has the ability to detect any genomic imbalance including deletions, duplications, aneuploidies and amplifications. Detection rates for chromosome abnormalities with array CGH range from 5-17% in individuals with normal results from prior routine cytogenetic testing. In addition, copy number variants (CNVs) were identified in all studies. These CNVs may include large-scale variation and can confound the diagnostic interpretations. Although cytogeneticists will require additional training and laboratories must become appropriately equipped, array CGH holds the promise of being the initial diagnostic tool in the identification of visible and submicroscopic chromosome abnormalities in mental retardation and other developmental disabilities.

  2. High Resolution, Radiation Tolerant Focal Plane Array for Lunar And Deep Space Applications Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Aerius Photonics and its partners propose the development of a high resolution, radiation hardened 3-D FLASH Focal Plane Array (FPA), with performance expected to be...

  3. End-Fire Phased Array 5G Antenna Design Using Leaf-Shaped Bow-Tie Elements for 28/38 GHz MIMO Applications

    DEFF Research Database (Denmark)

    Ojaroudiparchin, Naser; Shen, Ming; Pedersen, Gert F.

    2016-01-01

    In this paper, a new design of mm-Wave phased array 5G antenna for multiple-input multiple-output (MIMO) applications has been introduced. Two identical linear phased arrays with eight leaf-shaped bow-tie antenna elements have been used at different sides of the mobile-phone PCB. An Arlon AR 350...

  4. Applications of Flexible Ultrasonic Transducer Array for Defect Detection at 150 °C

    Directory of Open Access Journals (Sweden)

    Jiunn-Woei Liaw

    2013-01-01

    Full Text Available In this study, the feasibility of using a one dimensional 16-element flexible ultrasonic transducer (FUT array for nondestructive testing at 150 °C is demonstrated. The FUT arrays were made by a sol-gel sprayed piezoelectric film technology; a PZT composite film was sprayed on a titanium foil of 75 µm thickness. Since the FUT array is flexible, it was attached to a steel pipe with an outer diameter of 89 mm and a wall thickness of 6.5 mm at 150 °C. Using the ultrasonic pulse-echo mode, pipe thickness measurements could be performed. Moreover, using the ultrasonic pulse-echo and pitch-catch modes of each element of FUT array, the defect detection was performed on an Al alloy block of 30 mm thickness with a side-drilled hole (SDH of f3 mm at 150 °C. In addition, a post-processing algorithm based on the total focusing method was used to process the full matrix of these A-scan signals of each single transmitter and multi-receivers, and then the phase-array image was obtained to indicate this defect- SDH. Both results show the capability of FUT array being operated at 150 °C for the corrosion and defect detections.

  5. Controlled growth of standing Ag nanorod arrays on bare Si substrate using glancing angle deposition for self-cleaning applications

    Science.gov (United States)

    Singh, Dhruv P.; Singh, J. P.

    2014-03-01

    A facile approach to manipulate the hydrophobicity of surface by controlled growth of standing Ag nanorod arrays is presented. Instead of following the complicated conventional method of the template-assisted growth, the morphology or particularly average diameter and number density (nanorods cm-2) of nanorods were controlled on bare Si substrate by simply varying the deposition rate during glancing angle deposition. The contact angle measurements showed that the evolution of Ag nanorods reduces the surface energy and makes an increment in the apparent water contact angle compared to the plain Ag thin film. The contact angle was found to increase for the Ag nanorod samples grown at lower deposition rates. Interestingly, the morphology of the nanorod arrays grown at very low deposition rate (1.2 Å sec-1) results in a self-cleaning superhydrophobic surface of contact angle about 157° and a small roll-off angle about 5°. The observed improvement in hydrophobicity with change in the morphology of nanorod arrays is explained as the effect of reduction in solid fraction within the framework of Cassie-Baxter model. These self-cleaning Ag nanorod arrays could have a significant impact in wide range of applications such as anti-icing coatings, sensors and solar panels.

  6. Arrayed Waveguide Gratings and Their Application Using Super-High-Δ Silica-Based Planar Lightwave Circuit Technology

    Science.gov (United States)

    Maru, Koichi; Uetsuka, Hisato

    This paper reviews our recent progress on arrayed waveguide gratings (AWGs) using super-high-Δ silica-based planar lightwave circuit (PLC) technology and their application to integrated optical devices. Factors affecting the chip size of AWGs and the impact of increasing relative index difference Δ on the chip size are investigated, and the fabrication result of a compact athermal AWG using 2.5%-Δ silica-based waveguides is presented. As an application of super-high-Δ AWGs to integrated devices, a flat-passband multi/demultiplexer consisting of an AWG and cascaded MZIs is presented.

  7. Clocked combustor can array

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Won-Wook; McMahan, Kevin Weston; Srinivasan, Shiva Kumar

    2017-01-17

    The present application provides a clocked combustor can array for coherence reduction in a gas turbine engine. The clocked combustor can array may include a number of combustor cans positioned in a circumferential array. A first set of the combustor cans may have a first orientation and a second set of the combustor cans may have a second orientation.

  8. Self-chemisorption of azurin on functionalized oxide surfaces for the implementation of biomolecular devices

    Energy Technology Data Exchange (ETDEWEB)

    Biasco, A.; Maruccio, G.; Visconti, P.; Bramanti, A.; Calogiuri, P.; Cingolani, R.; Rinaldi, R

    2004-06-01

    In this work, we investigate the formation of redox protein Azurin (Az) monolayers on functionalized oxygen exposing surfaces. These metallo-proteins mediate electron transfer in the denitrifying chain of Pseudomonas bacteria and exhibit self-assembly properties, therefore they are good candidates for bio-electronic applications. Azurin monolayers are self-assembled onto silane functionalized surfaces and characterized by atomic force microscopy (AFM). We show also that a biomolecular field effect transistor (FET) in the solid state can be implemented by interconnecting an Azurin monolayer immobilized on SiO{sub 2} with two gold nanoelectrodes. Transport experiments, carried out at room temperature and ambient pressure, show FET behavior with conduction modulated by the gate potential.

  9. In situ characterization of nanoparticle biomolecular interactions in complex biological media by flow cytometry

    Science.gov (United States)

    Lo Giudice, Maria Cristina; Herda, Luciana M.; Polo, Ester; Dawson, Kenneth A.

    2016-11-01

    Nanoparticles interacting with, or derived from, living organisms are almost invariably coated in a variety of biomolecules presented in complex biological milieu, which produce a bio-interface or `biomolecular corona' conferring a biological identity to the particle. Biomolecules at the surface of the nanoparticle-biomolecule complex present molecular fragments that may be recognized by receptors of cells or biological barriers, potentially engaging with different biological pathways. Here we demonstrate that using intense fluorescent reporter binders, in this case antibodies bound to quantum dots, we can map out the availability of such recognition fragments, allowing for a rapid and meaningful biological characterization. The application in microfluidic flow, in small detection volumes, with appropriate thresholding of the detection allows the study of even complex nanoparticles in realistic biological milieu, with the emerging prospect of making direct connection to conditions of cell level and in vivo experiments.

  10. Computer programming and biomolecular structure studies: A step beyond internet bioinformatics.

    Science.gov (United States)

    Likić, Vladimir A

    2006-01-01

    This article describes the experience of teaching structural bioinformatics to third year undergraduate students in a subject titled Biomolecular Structure and Bioinformatics. Students were introduced to computer programming and used this knowledge in a practical application as an alternative to the well established Internet bioinformatics approach that relies on access to the Internet and biological databases. This was an ambitious approach considering that the students mostly had a biological background. There were also time constraints of eight lectures in total and two accompanying practical sessions. The main challenge was that students had to be introduced to computer programming from a beginner level and in a short time provided with enough knowledge to independently solve a simple bioinformatics problem. This was accomplished with a problem directly relevant to the rest of the subject, concerned with the structure-function relationships and experimental techniques for the determination of macromolecular structure.

  11. Application of simple array method in one-way traffic synthetic asessment

    Institute of Scientific and Technical Information of China (English)

    PEI Yu-long; LIU Guang-ping

    2005-01-01

    One-Way Traffic synthetic assessing can not only determine the assessment method, but can also provide an opportunity for further study of road systems. Comparing three Road Traffic Planning methods, which are Value Analysis method, Simple Array method and Step Analysis method, this paper concludes that Simple Array method has one prominent merit, avoiding the complicated relationship of various factors and simplifying the complex problem. Therefore Simple Array method is firstly presented in this paper to be the assessing measure to assess the One-Way Traffic Planning project. Although this assessing method cannot wholly give way to man's will, through consistently testing on qualitative factors and with the decision-making results of a multiprogram, this method is still an effective method. Using an example of Harbin One-Way Traffic planning, with seven assessing indexes including economic benefit index, Simple Array method is applied to synthetically assessing the program. This fully reflects the general function of One-Way Traffic planning program and objectively evaluates the program. It also proves that, as the method of One-Way Traffic synthetic assessing, Simple Array method is rational and practical.

  12. PMN-PT single crystal for endoscopic ultrasound 2D array application

    Science.gov (United States)

    Zhu, Yuhang; Liang, Huageng; Zhu, Benpeng; Zhou, Dan; Yang, Xiaofei

    2017-03-01

    Based on lead magnesium niobate-lead titanate single crystal, a 24 × 24 row-column addressing endoscopic two-dimensional array has been successfully fabricated using novel flanged electrodes and "semi-kerf" technologies. Each row/column array element was measured to have an electromechanical coupling coefficient of 0.81, a center frequency of 5MHz, and a fractional bandwidth of approximately 88% at -6 dB. Of particular significance was that the lead magnesium niobate-lead titanate element exhibits much higher sensitivity compared with lead zirconate titanate-based 2D arrays with similar operational frequency and element area. According to the Field II simulated results, although the obtained beamwidth at -6 dB was a little inferior to that of the fully sampled 24 × 24 two-dimensional array, it is believed that the beamwidth can be improved by appropriately increasing the element number. These results demonstrated that the lead magnesium niobate-lead titanate single-crystal 2D array is a promising candidate for real-time three-dimensional endoscopic ultrasound imaging.

  13. Low concentration ratio solar array for low Earth orbit multi-100 kW application

    Science.gov (United States)

    Nalbandian, S. J.

    1982-01-01

    An ongoing preliminary design effort directed toward a low-concentration-ratio photovoltaic array system based on 1984 technology and capable of delivering multi-hundred kilowatts (300 kW to 1000 kW range) in low earth orbit is described. The array system consists of two or more array modules each capable of delivering between 80 kW to 172 kW using silicon solar cells or gallium arsenide solar cells respectively. The array module deployed area is 1320 square meters and consists of 4356 pryamidal concentrator elements. The module, when stowed in the Space Shuttle's payload bay, has a stowage volume of a cube with 3.24 meters on a side. The concentrator elements are sized for a geometric concentration ratio (GCR) of six with an aperture area of 0.5 meters x 0.5 meters. The structural analysis and design trades leading to the baseline design are discussed. The configuration, as well as optical, thermal and electrical performance analyses that support the design and overall performance estimates for the array are described.

  14. A low power 10 V programmable array based on Nb x Si1-x Josephson junctions for metrology applications

    Science.gov (United States)

    Knipper, Richard; Anders, Solveig; Schubert, Marco; Peiselt, Katja; Scheller, Thomas; Franke, Dirk; Dellith, Jan; Meyer, Hans-Georg

    2016-09-01

    Josephson junctions generate, when subjected to microwave irradiation, voltages with a very high precision and are used in metrology applications. So-called PJVS (programmable Josephson voltage-standards) are capable of generating both AC and DC voltages of up to 10 V. Our work addresses a full fabrication scenario for 10 V PJVS arrays driven at 70 GHz to be used in low microwave-power conditions as in, but not limited to GUNN diodes or cryocooler applications. Nb x Si1-x in its function as a barrier material was characterised with AFM, RBS and reflectometry in order to establish a reliable technological foundation. A 10 V PJVS array driven with microwave power below 50 mW is further presented, which was achieved by optimising the fabrication technology regarding the degree of homogeneity of the Josephson junctions composition and thickness. Control over these parameters is crucial in choosing a stable and well-suited characteristic voltage (I c R n product) and critical current density j c. With this, a low-power operation of a PJVS array is possible without the need for liquid helium cooling, which is currently limiting the availability of PJVS based metrology.

  15. Relaxing the electrostatic screening effect by patterning vertically-aligned silicon nanowire arrays into bundles for field emission application

    Energy Technology Data Exchange (ETDEWEB)

    Hung, Yung-Jr, E-mail: yungjrhung@gmail.com [Department of Electronic Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Department of Photonics, National Sun Yat-sen University, No. 70, Lienhai Rd., Kaohsiung 80424, Taiwan, ROC (China); Graduate Institute of Electro-Optical Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Lee, San-Liang [Department of Electronic Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Graduate Institute of Electro-Optical Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Beng, Looi Choon [Faculty of Engineering, Multimedia University, Jalan Multimedia, 63100 Cyberjaya, Selangor (Malaysia); Chang, Hsuan-Chen [Department of Electronic Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Graduate Institute of Electro-Optical Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Huang, Yung-Jui [Graduate Institute of Electro-Optical Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Lee, Kuei-Yi; Huang, Ying-Sheng [Department of Electronic Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Graduate Institute of Electro-Optical Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China)

    2014-04-01

    Top-down fabrication strategies are proposed and demonstrated to realize arrays of vertically-aligned silicon nanowire bundles and bundle arrays of carbon nanotube–silicon nanowire (CNT–SiNW) heterojunctions, aiming for releasing the electrostatic screening effect and improving the field emission characteristics. The trade-off between the reduction in the electrostatic screening effect and the decrease of emission sites leads to an optimal SiNW bundle arrangement which enables the lowest turn-on electric field of 1.4 V/μm and highest emission current density of 191 μA/cm{sup 2} among all testing SiNW samples. Benefiting from the superior thermal and electrical properties of CNTs and the flexible patterning technologies available for SiNWs, bundle arrays of CNT–SiNW heterojunctions show improved and highly-uniform field emission with a lower turn-on electric field of 0.9 V/μm and higher emission current density of 5.86 mA/cm{sup 2}. The application of these materials and their corresponding fabrication approaches is not limited to the field emission but can be used for a variety of emerging fields like nanoelectronics, lithium-ion batteries, and solar cells. - Highlights: • Aligned silicon nanowire (SiNW) bundle arrays are realized with top-down methods. • Growing carbon nanotubes atop SiNW bundle arrays enable uniform field emission. • A turn-on field of 0.9 V/μm and an emission current of > 5 mA/cm{sup 2} are achieved.

  16. Arrays of microscopic magnetic traps for cold atoms and their applications in atom optics

    Institute of Scientific and Technical Information of China (English)

    印建平; 高伟建; 胡建军

    2002-01-01

    A single microscopic magnetic trap for neutral atoms using planar current-carrying wires was proposed and studiedtheoretically by Weinstein et al. In this paper, we propose three structures of composite current-carrying wires to provide1D, 2D and 3D arrays of microscopic magnetic traps for cold alkali atoms. The spatial distributions of magnetic fieldsgenerated by these structures are calculated and the field gradient and curvature in each single microtrap are analysed.Our study shows that arrays of microscopic magnetic traps can be used to provide 1D, 2D or 3D atomic magneticlattices, and even to realize 1D, 2D and 3D arrays of magneto-optical traps, and so on.

  17. Complementary bipolar application specific analog semicustom array, intended to implement front-end units

    CERN Document Server

    Atkin, E; Kondratenko, S; Maslennikov, V; Meshcheriakov, V; Mishin, Yu; Volkov, Yu

    2002-01-01

    The structure of an analog semicustom array, intended to implement front-end electronics ICs on its basis, is considered. The features of this array are: implementation with an inexpensive bipolar process despite containing an equal number of NPN and PNP structures with well matched characteristics, supply voltages from 1.5 V to 15 V, transistor current gains Bst~100 and unity gain frequencies Ft > 3 GHz at collector currents of (100...300) mu A, high- and low-ohmic resistors, MOS capacitors, minimum two variable plating levels available. Specific circuit diagrams and parameters of the front-end electronics ICs, created on the basis of the considered array, are presented. The results of their tests are given. (4 refs).

  18. Development and characterization of a TES optical imaging array for astrophysics applications

    Energy Technology Data Exchange (ETDEWEB)

    Burney, J. E-mail: burney@stanford.edu; Bay, T.J.; Brink, P.L.; Cabrera, B.; Castle, J.P.; Romani, R.W.; Tomada, A.; Nam, S.W.; Miller, A.J.; Martinis, J.; Wang, E.; Kenny, T.; Young, B.A

    2004-03-11

    Our research group has successfully developed photon detectors capable of both time-stamping and energy-resolving individual photons at very high rates in a wide band from the near-IR through optical and into the near-UV. We have fabricated 32-pixel arrays of these Transition-Edge Sensor (TES) devices and have mounted them in an adiabatic demagnetization refrigerator equipped with windows for direct imaging. We have characterized single pixel behavior; we have also begun operating multiple pixels simultaneously, starting the scaling process towards use of the full array. We emphasize the development of a metalized mask for our array that blocks photons from hitting the inter-pixel areas and reflects them onto the TESs. We also present calibration data on detector resolution, electronics noise, and optical alignment.

  19. Flexible complementary metal oxide semiconductor microelectrode arrays with applications in single cell characterization

    Science.gov (United States)

    Pajouhi, H.; Jou, A. Y.; Jain, R.; Ziabari, A.; Shakouri, A.; Savran, C. A.; Mohammadi, S.

    2015-11-01

    A highly flexible microelectrode array with an embedded complementary metal oxide semiconductor (CMOS) instrumentation amplifier suitable for sensing surfaces of biological entities is developed. The array is based on ultrathin CMOS islands that are thermally isolated from each other and are interconnected by meandered nano-scale wires that can adapt to cellular surfaces with micro-scale curvatures. CMOS temperature sensors are placed in the islands and are optimally biased to have high temperature sensitivity. While no live cell thermometry is conducted, a measured temperature sensitivity of 0.15 °C in the temperature range of 35 to 40 °C is achieved by utilizing a low noise CMOS lock-in amplifier implemented in the same technology. The monolithic nature of CMOS sensors and amplifier circuits and their versatile flexible interconnecting wires overcome the sensitivity and yield limitations of microelectrode arrays fabricated in competing technologies.

  20. Fabrication, Modification, and Emerging Applications of TiO2 Nanotube Arrays by Electrochemical Synthesis: A Review

    Directory of Open Access Journals (Sweden)

    Jian-Ying Huang

    2013-01-01

    Full Text Available Titania nanotube arrays (TNAs as a hot nanomaterial have a unique highly ordered array structure and good mechanical and chemical stability, as well as excellent anticorrosion, biocompatible, and photocatalytic performance. It has been fabricated by a facile electrochemical anodization in electrolytes containing small amounts of fluoric ions. In combination with our research work, we review the recent progress of the new research achievements of TNAs on the preparation processes, forming mechanism, and modification. In addition, we will review the potential and significant applications in the photocatalytic degradation of pollutants, solar cells, water splitting, and other aspects. Finally, the existing problems and further prospects of this renascent and rapidly developing field are also briefly addressed and discussed.

  1. Comparison of simulated and experimental 3D laser images using a GmAPD array: application to long range detection

    Science.gov (United States)

    Coyac, Antoine; Riviere, Nicolas; Hespel, Laurent; Briottet, Xavier

    2016-05-01

    In this paper, we show the feasibility and the benefit to use a Geiger-mode Avalanche Photo-Diode (GmAPD) array for long range detection, up to several kilometers. A simulation of a Geiger detection sensor is described, which is a part of our end-to-end laser simulator, to generate simulated 3D laser images from synthetic scenes. Resulting 3D point clouds have been compared to experimental acquisitions, performed with our GmAPD 3D camera on similar scenarios. An operational case of long range detection is presented: a copper cable outstretched above the ground, 1 kilometer away the experimental system and with a horizontal line-of-sight (LOS). The detection of such a small object from long distance observation strongly suggests that GmAPD focal plane arrays could be easily used for real-time 3D mapping or surveillance applications from airborne platforms, with good spatial and temporal resolutions.

  2. Engineering biomolecular microenvironments for cell instructive biomaterials.

    Science.gov (United States)

    Custódio, Catarina A; Reis, Rui L; Mano, João F

    2014-06-01

    Engineered cell instructive microenvironments with the ability to stimulate specific cellular responses are a topic of high interest in the fabrication and development of biomaterials for application in tissue engineering. Cells are inherently sensitive to the in vivo microenvironment that is often designed as the cell "niche." The cell "niche" comprising the extracellular matrix and adjacent cells, influences not only cell architecture and mechanics, but also cell polarity and function. Extensive research has been performed to establish new tools to fabricate biomimetic advanced materials for tissue engineering that incorporate structural, mechanical, and biochemical signals that interact with cells in a controlled manner and to recapitulate the in vivo dynamic microenvironment. Bioactive tunable microenvironments using micro and nanofabrication have been successfully developed and proven to be extremely powerful to control intracellular signaling and cell function. This Review is focused in the assortment of biochemical signals that have been explored to fabricate bioactive cell microenvironments and the main technologies and chemical strategies to encode them in engineered biomaterials with biological information.

  3. Digitalization decoupling method and its application to the phased array in MRI

    Institute of Scientific and Technical Information of China (English)

    SONG Xiaoyu; WANG Weidong; ZHANG Bida; LEI Ming; BAO Shanglian

    2003-01-01

    A general network decoupling method for phased array radio frequency coil used in magnetic resonance imaging is developed. A more flexible digital approach further simplifies the method, which has an even higher signal-to-noise ratio. The performance of the digitalized decoupling method was confirmed by the calculated result by using a high frequency structure simulation software with the method of finite element for a tree-port phased array RF coil. The consistence was well established between the theoretical and simulated results.

  4. Application of bistable optical logic gate arrays to all-optical digital parallel processing

    Science.gov (United States)

    Walker, A. C.

    1986-05-01

    Arrays of bistable optical gates can form the basis of an all-optical digital parallel processor. Two classes of signal input geometry exist - on- and off-axis - and lead to distinctly different device characteristics. The optical implementation of multisignal fan-in to an array of intrinsically bistable optical gates using the more efficient off-axis option is discussed together with the construction of programmable read/write memories from optically bistable devices. Finally the design of a demonstration all-optical parallel processor incorporating these concepts is presented.

  5. Liquid sodium testing of in-house phased array EMAT transducer for L-wave applications

    Energy Technology Data Exchange (ETDEWEB)

    Le Bourdais, F.; Le Polles, T. [Non Destructive Testing Department at the French Atomic Energy Commission (CEA), Saclay, 91191 Gif sur Yvette CEDEX, (France); Baque, F. [Department of Sodium Technology at the French Atomic Energy Commission (CEA), Cadarache, 13108 St Paul lez Durance CEDEX, (France)

    2015-07-01

    This paper describes the development of an in-house phased array EMAT transducer for longitudinal wave inspection in liquid sodium. The work presented herein is part of an undergoing project aimed at improving in-service inspection techniques for the ASTRID reactor project. The design process of the phased array EMAT probe is briefly explained and followed by a review of experimental test results. We first present test results obtained in the laboratory while the last part of the paper describes the liquid sodium testing and the produced ultrasound images. (authors)

  6. Frequency-domain imaging algorithm for ultrasonic testing by application of matrix phased arrays

    Directory of Open Access Journals (Sweden)

    Dolmatov Dmitry

    2017-01-01

    Full Text Available Constantly increasing demand for high-performance materials and systems in aerospace industry requires advanced methods of nondestructive testing. One of the most promising methods is ultrasonic imaging by using matrix phased arrays. This technique allows to create three-dimensional ultrasonic imaging with high lateral resolution. Further progress in matrix phased array ultrasonic testing is determined by the development of fast imaging algorithms. In this article imaging algorithm based on frequency domain calculations is proposed. This approach is computationally efficient in comparison with time domain algorithms. Performance of the proposed algorithm was tested via computer simulations for planar specimen with flat bottom holes.

  7. Formation of organic crystalline nanopillar arrays and their application to organic photovoltaic cells.

    Science.gov (United States)

    Hirade, Masaya; Nakanotani, Hajime; Yahiro, Masayuki; Adachi, Chihaya

    2011-01-01

    To enhance the performance of organic photovoltaic (OPV) cells, preparation of organic nanometer-sized pillar arrays is fascinating because a significantly large area of a donor/acceptor heterointerface having continuous conduction path to both anode and cathode electrodes can be realized. In this study, we grew cupper phthalocyanine (CuPc) crystalline nanopillar arrays by conventional thermal gradient sublimation technique using a few-nanometer-sized trigger seeds composed of a CuPc and 3,4,9,10-perylene-tetracarboxylic-dianhydride (PTCDA) stacked layer. We optimized the pillar density by tuning crystal growth condition in order to apply it to OPV cells.

  8. Theoretical description of biomolecular hydration - Application to A-DNA

    Energy Technology Data Exchange (ETDEWEB)

    Garcia, A.E.; Hummer, G. [Los Alamos National Laboratory, NM (United States); Soumpasis, D.M. [Max Planck Inst. for Biophysical Chemistry, Goettingen (Germany)

    1994-12-31

    The local density of water molecules around a biomolecule is constructed from calculated two- and three-points correlation functions of polar solvents in water using a Potential-of-Mean-Force (PMF) expansion. As a simple approximation, the hydration of all polar (including charged) groups in a biomolecule is represented by the hydration of water oxygen in bulk water, and the effect of non-polar groups on hydration are neglected, except for excluded volume effects. Pair and triplet correlation functions are calculated by molecular dynamics simulations. We present calculations of the structural hydration for ideal A-DNA molecules with sequences [d(CG){sub 5}]{sub 2} and [d(C{sub 5}G{sub 5})]{sub 2}. We find that this method can accurately reproduce the hydration patterns of A-DNA observed in neutron diffraction experiments on oriented DNA fibers.

  9. Array microscopy technology and its application to digital detection of Mycobacterium tuberculosis

    Science.gov (United States)

    McCall, Brian P.

    Tuberculosis causes more deaths worldwide than any other curable infectious disease. This is the case despite tuberculosis appearing to be on the verge of eradication midway through the last century. Efforts at reversing the spread of tuberculosis have intensified since the early 1990s. Since then, microscopy has been the primary frontline diagnostic. In this dissertation, advances in clinical microscopy towards array microscopy for digital detection of Mycobacterium tuberculosis are presented. Digital array microscopy separates the tasks of microscope operation and pathogen detection and will reduce the specialization needed in order to operate the microscope. Distributing the work and reducing specialization will allow this technology to be deployed at the point of care, taking the front-line diagnostic for tuberculosis from the microscopy center to the community health center. By improving access to microscopy centers, hundreds of thousands of lives can be saved. For this dissertation, a lens was designed that can be manufactured as 4x6 array of microscopes. This lens design is diffraction limited, having less than 0.071 waves of aberration (root mean square) over the entire field of view. A total area imaged onto a full-frame digital image sensor is expected to be 3.94 mm2, which according to tuberculosis microscopy guidelines is more than sufficient for a sensitive diagnosis. The design is tolerant to single point diamond turning manufacturing errors, as found by tolerance analysis and by fabricating a prototype. Diamond micro-milling, a fabrication technique for lens array molds, was applied to plastic plano-concave and plano-convex lens arrays, and found to produce high quality optical surfaces. The micro-milling technique did not prove robust enough to produce bi-convex and meniscus lens arrays in a variety of lens shapes, however, and it required lengthy fabrication times. In order to rapidly prototype new lenses, a new diamond machining technique was

  10. Prussian Blue-coated interdigitated array electrodes for possible analytical application

    NARCIS (Netherlands)

    Hartmann, M.; Grabner, E.W.; Bergveld, P.

    1991-01-01

    Thin films of iron(III) hexacyanoferrate(II) (Prussian Blue) were electrochemically deposited on interdigitated array (IDA) electrodes, yielding systems which can be considered as chemiresistors in sensing alkali metal ion concentrations in an adjacent electrolyte. This is due to the fact that the c

  11. Array Signal Processing Under Model Errors With Application to Speech Separation

    Science.gov (United States)

    1992-10-31

    Acoust. Speech Sig. Proc., pp. 1149-1152, Alburqueque NM, 1990. [37] E. A. Patrick , Fundamentals of Pattern Recognition, Englewood Cliffs, NJ, 1972...Proc., Toronto, pp. 1365-1368, 1991. [411 S. U. Pillai , Array Signal Processing, Springer Verlag, NY, 1989. [42] B. Porat and B. Friedlander

  12. Study of the characteristics of a scintillation array and single pixels for nuclear medicine imaging applications

    Institute of Scientific and Technical Information of China (English)

    ZHU Jie; MA Hong-Guang; MA Wen-Yan; ZENG Hui; WANG Zhao-Min; XU Zi-Zong

    2009-01-01

    By using a pixelized Nal(T1) crystal array coupled to a R2486 PSPMT, the characteristics of the array and of a single pixel, such as the light output, energy resolution, peak-to-valley ratio (P/V) and imaging performance of the detector were studied. The pixel size of the NaI(TI) scintillation pixel array is 2 min×2 mm×5 mm. There are in total 484 pixels in a 22~22 matrix. In the pixel spectrum an average peak-to-valley ratio (P/V) of 16 was obtained. In the image of all the pixels, good values for the Peak-to-Valley ratios could be achieved, namely a mean of 17, a maximum of 45 and the average peak FWHM (the average value of intrinsic spatial resolution) of 2.3 mm. However, the PSPMT non-uniform response and the scintillation pixels array inhomogeneities degrade the imaging performance of the detector.

  13. Single-layer graphene-TiO{sub 2} nanotubes array heterojunction for ultraviolet photodetector application

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Deng-Yue [School of Material Sciences and Engineering, Hefei University of Technology, Hefei, Anhui 230009 (China); Ge, Cai-Wang [School of Electronic Science and Applied Physics, Hefei University of Technology, Hefei, Anhui 230009 (China); Wang, Jiu-Zhen [School of Material Sciences and Engineering, Hefei University of Technology, Hefei, Anhui 230009 (China); Zhang, Teng-Fei [School of Electronic Science and Applied Physics, Hefei University of Technology, Hefei, Anhui 230009 (China); Wu, Yu-Cheng, E-mail: ycwu@hfut.edu.cn [School of Material Sciences and Engineering, Hefei University of Technology, Hefei, Anhui 230009 (China); Liang, Feng-Xia, E-mail: fxliang@hfut.edu.cn [School of Material Sciences and Engineering, Hefei University of Technology, Hefei, Anhui 230009 (China)

    2016-11-30

    Highlights: • Heterostructures comprised of a single-layer graphene and TiO{sub 2} nanotube arrays were constructed for ultraviolet detection. • The electrical properties of the fabricated heterostructures were dependent on the annealing atmospheres. • The effect of anodic TiO{sub 2} nanotube length on the performance of the photodetector were investigated. - Abstract: In this work, we reported on the fabrication of a single-layer graphene (SLG)-TiO{sub 2} nanotube arrays (NTs) heterostructures ultraviolet photodetector (UVPD) by transferring chemical vapor deposition derived MLG on the surface of anodic TiO{sub 2}NTs array. Through varying the annealing atmosphere and anodization time in the TiO{sub 2} synthesis procedure, the electronic and optoelectronic properties of the as-fabricated Schottky junction UVPD were studied. It was revealed that the anodic TiO{sub 2}NTs annealed in air showed a better rectifying behavior and was highly sensitive to UV light irradiation. Further investigation found that the device performance of the UVPD can be readily modulated by the anodization time, and the anodic TiO{sub 2}NTs with a medium tube length of 9.6 μm exhibits the highest device performance. These results demonstrated that the present SLG-TiO{sub 2}NTs array hetero-junction UVPD will be highly promising for fabricating high-performance optoelectronic device and system in the future.

  14. Microphone matching for hybrid-order directional arrays in hearing aid applications

    Science.gov (United States)

    Warren, Daniel M.; Thompson, Steve C.

    2003-04-01

    The ability of a hearing aid user to distinguish a single speech source amidst general background noise (for example, dinner table or cocktail party conversation) may be improved by a directional array of microphones in the hearing instrument. The theoretical maximum directivity index (DI) of a first-order pairing of microphones is 6 dB, and a second-order array of three microphones is 9.5 dB, assuming all three microphones have identical frequency responses. The close spacing of microphone ports in a hearing aid body means that directivity degrades rapidly with differences in microphone sensitivities. A hybrid of first- and second-order arrays can mitigate this effect, although close microphone matching is still necessary for high directivity. This paper explores the effect of microphone mismatch on the directivity of such arrays, and describes practical criteria for selecting matched microphones out of production batches to maximize a speech intelligibility weighted directivity index. [Work supported by Knowles Electronics, LLC.

  15. Application of a maximum likelihood type estimator to the towed array shape estimation problem

    NARCIS (Netherlands)

    Been, R.

    1996-01-01

    At the TNO Physics and Electronics Laboratory (TNO-FEL), for a number of decades, the behaviour and performance of towed sonar systems has been studied extensively. Since the performance of towed sonars highly depends on the shape of the hydrophone array, the underwater acoustics group started perfo

  16. Application of HEMT for multiplexing large arrays of high impedance LTDs

    Energy Technology Data Exchange (ETDEWEB)

    Benoit, A.; Camus, Ph. E-mail: camus@grenoble.cnrs.fr; Cavanna, A.; Elhdiy, A.; Jin, Y.; Leclercq, S

    2004-03-11

    The development of large arrays of detectors requires using a proximate electronics at low temperatures for signal multiplexing and amplification. We report the use of commercial High Electronic Mobility Transistors (HEMT) for multiplexing signals from high impedance LTD arrays (typ. 10-100 M{omega}). The electronic architecture is based on HEMTs cooled at 0.1 K for the multiplexer and a JFET amplifier cooled at 100 K with <1 nV/Hz{sup 1/2} noise figure. For this time-multiplexing scheme, a capacitor is used to integrate the signal between measurements. Two main solutions are compared for the detectors polarization: the first uses a classical resistive method; the second uses a common capacitor allowing to polarize the detectors individually. The multiplexing ratio is mainly limited by the amplifier noise to about 20 detectors per amplifier with a pixel sampling rate of about 60 Hz. A specific development of HEMT arrays with Quantum Point Contacts (QPC-HEMT) with very small grid-to-channel capacitor ({approx}1 fF) allows minimizing the transient effects and realizing a close integration with the LTD arrays.

  17. A transparency model and its applications for simulation of reflector arrays and sound transmission (A)

    DEFF Research Database (Denmark)

    Christensen, Claus Lynge; Rindel, Jens Holger

    2006-01-01

    The paper describes a new method for simulating the frequency-dependent reflection and transmission of reflector arrays, and the frequency-dependent airborne sound insulation between rooms by means of a room acoustic computer model. The method makes use of a transparency method in the ray-tracing...

  18. Optimal design of low-density SNP arrays for genomic prediction: algorithm and applications

    Science.gov (United States)

    Low-density (LD) single nucleotide polymorphism (SNP) arrays provide a cost-effective solution for genomic prediction and selection, but algorithms and computational tools are needed for their optimal design. A multiple-objective, local optimization (MOLO) algorithm was developed for design of optim...

  19. Applications of Generalized Cascade Scattering Matrix on the Microwave Circuits and Antenna Arrays

    Directory of Open Access Journals (Sweden)

    Shun-Feng Cao

    2015-01-01

    Full Text Available The ideal lossless symmetrical reciprocal network (ILSRN is constructed and introduced to resolve the complex interconnections of two arbitrary microwave networks. By inserting the ILSRNs, the complex interconnections can be converted into the standard one-by-one case without changing the characteristics of the previous microwave networks. Based on the algorithm of the generalized cascade scattering matrix, a useful derivation on the excitation coefficients of antenna arrays is firstly proposed with consideration of the coupling effects. And then, the proposed techniques are applied on the microwave circuits and antenna arrays. Firstly, an improved magic-T is optimized, fabricated, and measured. Compared with the existing results, the prototype has a wider bandwidth, lower insertion loss, better return loss, isolation, and imbalances. Secondly, two typical linear waveguide slotted arrays are designed. Both the radiation patterns and scattering parameters at the input ports agree well with the desired goals. Finally, the feeding network of a two-element microstrip antenna array is optimized to decrease the mismatch at the input port, and a good impedance matching is successfully achieved.

  20. Biological applications of an LCoS-BASED PROGRAMMABLE ARRAY MICROSCOPE (PAM)

    NARCIS (Netherlands)

    Hagen, G.M.; Caarls, W.; Thomas, M.; Hill, A.; Lidke, K.A.; Rieger, B.; Fritsch, C.; Van Geest, B.; Jovin, T.M.; Arndt-Jovin, D.J.

    2007-01-01

    We report on a new generation, commercial prototype of a programmable array optical sectioning fluorescence microscope (PAM) for rapid, light efficient 3D imaging of living specimens. The stand-alone module, including light source(s) and detector(s), features an innovative optical design and a ferro

  1. Broadband High Efficiency Fractal-Like and Diverse Geometry Silicon Nanowire Arrays for Photovoltaic Applications

    Science.gov (United States)

    AL-Zoubi, Omar H.

    Solar energy has many advantages over conventional sources of energy. It is abundant, clean and sustainable. One way to convert solar energy directly into electrical energy is by using the photovoltaic solar cells (PVSC). Despite PVSC are becoming economically competitive, they still have high cost and low light to electricity conversion efficiency. Therefore, increasing the efficiency and reducing the cost are key elements for producing economically more competitive PVSC that would have significant impact on energy market and saving environment. A significant percentage of the PVSC cost is due to the materials cost. For that, thin films PVSC have been proposed which offer the benefits of the low amount of material and fabrication costs. Regrettably, thin film PVSC show poor light to electricity conversion efficiency because of many factors especially the high optical losses. To enhance conversion efficiency, numerous techniques have been proposed to reduce the optical losses and to enhance the absorption of light in thin film PVSC. One promising technique is the nanowire (NW) arrays in general and the silicon nanowire (SiNW) arrays in particular. The purpose of this research is to introduce vertically aligned SiNW arrays with enhanced and broadband absorption covering the entire solar spectrum while simultaneously reducing the amount of material used. To this end, we apply new concept for designing SiNW arrays based on employing diversity of physical dimensions, especially radial diversity within certain lattice configurations. In order to study the interaction of light with SiNW arrays and compute their optical properties, electromagnetic numerical modeling is used. A commercial numerical electromagnetic solver software package, high frequency structure simulation (HFSS), is utilized to model the SiNW arrays and to study their optical properties. We studied different geometries factors that affect the optical properties of SiNW arrays. Based on this study, we

  2. Knowledge based cluster ensemble for cancer discovery from biomolecular data.

    Science.gov (United States)

    Yu, Zhiwen; Wongb, Hau-San; You, Jane; Yang, Qinmin; Liao, Hongying

    2011-06-01

    The adoption of microarray techniques in biological and medical research provides a new way for cancer diagnosis and treatment. In order to perform successful diagnosis and treatment of cancer, discovering and classifying cancer types correctly is essential. Class discovery is one of the most important tasks in cancer classification using biomolecular data. Most of the existing works adopt single clustering algorithms to perform class discovery from biomolecular data. However, single clustering algorithms have limitations, which include a lack of robustness, stability, and accuracy. In this paper, we propose a new cluster ensemble approach called knowledge based cluster ensemble (KCE) which incorporates the prior knowledge of the data sets into the cluster ensemble framework. Specifically, KCE represents the prior knowledge of a data set in the form of pairwise constraints. Then, the spectral clustering algorithm (SC) is adopted to generate a set of clustering solutions. Next, KCE transforms pairwise constraints into confidence factors for these clustering solutions. After that, a consensus matrix is constructed by considering all the clustering solutions and their corresponding confidence factors. The final clustering result is obtained by partitioning the consensus matrix. Comparison with single clustering algorithms and conventional cluster ensemble approaches, knowledge based cluster ensemble approaches are more robust, stable and accurate. The experiments on cancer data sets show that: 1) KCE works well on these data sets; 2) KCE not only outperforms most of the state-of-the-art single clustering algorithms, but also outperforms most of the state-of-the-art cluster ensemble approaches.

  3. Photochirogenesis: Photochemical Models on the Origin of Biomolecular Homochirality

    Directory of Open Access Journals (Sweden)

    Cornelia Meinert

    2010-05-01

    Full Text Available Current research focuses on a better understanding of the origin of biomolecular asymmetry by the identification and detection of the possibly first chiral molecules that were involved in the appearance and evolution of life on Earth. We have reasons to assume that these molecules were specific chiral amino acids. Chiral amino acids have been identified in both chondritic meteorites and simulated interstellar ices. Present research reasons that circularly polarized electromagnetic radiation was identified in interstellar environments and an asymmetric interstellar photon-molecule interaction might have triggered biomolecular symmetry breaking. We review on the possible prebiotic interaction of ‘chiral photons’ in the form of circularly polarized light, with early chiral organic molecules. We will highlight recent studies on enantioselective photolysis of racemic amino acids by circularly polarized light and experiments on the asymmetric photochemical synthesis of amino acids from only one C and one N containing molecules by simulating interstellar environments. Both approaches are based on circular dichroic transitions of amino acids that will be presented as well.

  4. Programming in Biomolecular Computation: Programs, Self-Interpretation and Visualisation

    Directory of Open Access Journals (Sweden)

    J.G. Simonsen

    2011-01-01

    Full Text Available Our goal is to provide a top-down approach to biomolecular computation. In spite of widespread discussion about connections between biology and computation, one question seems notable by its absence: Where are the programs? We identify a number of common features in programming that seem conspicuously absent from the literature on biomolecular computing; to partially redress this absence, we introduce a model of computation that is evidently programmable, by programs reminiscent of low-level computer machine code; and at the same time biologically plausible: its functioning is defined by a single and relatively small set of chemical-like reaction rules. Further properties: the model is stored-program: programs are the same as data, so programs are not only executable, but are also compilable and interpretable. It is universal: all computable functions can be computed (in natural ways and without arcane encodings of data and algorithm; it is also uniform: new ``hardware'' is not needed to solve new problems; and (last but not least it is Turing complete in a strong sense: a universal algorithm exists, that is able to execute any program, and is not asymptotically inefficient.

  5. Extension of the GLYCAM06 Biomolecular Force Field to Lipids, Lipid Bilayers and Glycolipids.

    Science.gov (United States)

    Tessier, Matthew B; Demarco, Mari L; Yongye, Austin B; Woods, Robert J

    2008-01-01

    GLYCAM06 is a generalisable biomolecular force field that is extendible to diverse molecular classes in the spirit of a small-molecule force field. Here we report parameters for lipids, lipid bilayers and glycolipids for use with GLYCAM06. Only three lipid-specific atom types have been introduced, in keeping with the general philosophy of transferable parameter development. Bond stretching, angle bending, and torsional force constants were derived by fitting to quantum mechanical data for a collection of minimal molecular fragments and related small molecules. Partial atomic charges were computed by fitting to ensemble-averaged quantum-computed molecular electrostatic potentials.In addition to reproducing quantum mechanical internal rotational energies and experimental valence geometries for an array of small molecules, condensed-phase simulations employing the new parameters are shown to reproduce the bulk physical properties of a DMPC lipid bilayer. The new parameters allow for molecular dynamics simulations of complex systems containing lipids, lipid bilayers, glycolipids, and carbohydrates, using an internally consistent force field. By combining the AMBER parameters for proteins with the GLYCAM06 parameters, it is also possible to simulate protein-lipid complexes and proteins in biologically relevant membrane-like environments.

  6. Application of Pfortran and Co-Array Fortran in the Parallelization of the GROMOS96 Molecular Dynamics Module

    Directory of Open Access Journals (Sweden)

    Piotr Bała

    2001-01-01

    Full Text Available After at least a decade of parallel tool development, parallelization of scientific applications remains a significant undertaking. Typically parallelization is a specialized activity supported only partially by the programming tool set, with the programmer involved with parallel issues in addition to sequential ones. The details of concern range from algorithm design down to low-level data movement details. The aim of parallel programming tools is to automate the latter without sacrificing performance and portability, allowing the programmer to focus on algorithm specification and development. We present our use of two similar parallelization tools, Pfortran and Cray's Co-Array Fortran, in the parallelization of the GROMOS96 molecular dynamics module. Our parallelization started from the GROMOS96 distribution's shared-memory implementation of the replicated algorithm, but used little of that existing parallel structure. Consequently, our parallelization was close to starting with the sequential version. We found the intuitive extensions to Pfortran and Co-Array Fortran helpful in the rapid parallelization of the project. We present performance figures for both the Pfortran and Co-Array Fortran parallelizations showing linear speedup within the range expected by these parallelization methods.

  7. Field application of phased array ultrasonic testing for structural weld overlay on dissimilar welds of pressurizer nozzles

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Jin Hoi; Kim, Yong Sik [Korea Hydro and Nuclear Power Company Ltd., Central Research Institute, Daejeon (Korea, Republic of)

    2015-08-15

    Weld overlay was first used in power plants in the US in the early 1980s as an interim method of repairing the welds of flawed piping joints. Weld overlaid piping joints in nuclear power plants must be examined periodically using ultrasonic examination technology. Portable phased array ultrasonic technology has recently become available. Currently, the application of preemptive weld overlays as a mitigation technique and/as a method to improve the examination surface condition for more complex configurations is becoming more common. These complex geometries may require several focused conventional transducers for adequate inspection of the overlay, the original weld, and the base material. Alternatively, Phased array ultrasonic probes can be used to generate several inspection angles simultaneously at various focal depths to provide better and faster coverage than that possible by conventional methods. Thus, this technology can increase the speed of examinations, save costs, and reduce radiation exposure. In this paper, we explain the general sequence of the inspection of weld overlay and the results of signal analysis for some PAUT (phased array ultrasonic testing) signals detected in on-site inspections.

  8. Non-invasive method for selection of electrodes and stimulus parameters for FES applications with intrafascicular arrays

    Science.gov (United States)

    Dowden, B. R.; Frankel, M. A.; Normann, R. A.; Clark, G. A.

    2012-02-01

    High-channel-count intrafascicular electrode arrays provide comprehensive and selective access to the peripheral nervous system. One practical difficulty in using several electrode arrays to evoke coordinated movements in paralyzed limbs is the identification of the appropriate stimulation channels and stimulus parameters to evoke desired movements. Here we present the use of a six degree-of-freedom load cell placed under the foot of a feline to characterize the muscle activation produced by three 100-electrode Utah Slanted Electrode Arrays (USEAs) implanted into the femoral nerves, sciatic nerves, and muscular branches of the sciatic nerves of three cats. Intramuscular stimulation was used to identify the endpoint force directions produced by 15 muscles of the hind limb, and these directions were used to classify the forces produced by each intrafascicular USEA electrode as flexion or extension. For 451 USEA electrodes, stimulus intensities for threshold and saturation muscle forces were identified, and the 3D direction and linearity of the force recruitment curves were determined. Further, motor unit excitation independence for 198 electrode pairs was measured using the refractory technique. This study demonstrates the utility of 3D endpoint force monitoring as a simple and non-invasive metric for characterizing the muscle-activation properties of hundreds of implanted peripheral nerve electrodes, allowing for electrode and parameter selection for neuroprosthetic applications.

  9. Design of crossing metallic metasurface arrays based on high sensitivity of gap enhancement and transmittance shift for plasmonic sensing applications

    Science.gov (United States)

    Chou Chau, Yuan-Fong; Syu, Jhih-Yu; Chou Chao, Chung-Ting; Chiang, Hai-Pang; Lim, Chee Ming

    2017-02-01

    We have systematically investigated a general approach to optimize the optical performances of a 2D array of crossing metal nanoparticle (MNP) thin film. These functionalized metasurface MNPs are designed for use as wavelength-selection filters in high-sensitivity infrared spectroscopic plasmonic sensors. The effects of different structural parameters corresponding to the gap-enhancement and bonded transmittance modes on MNP arrays are studied. Two types of sensor configurations based on gold MNP arrays are thoroughly investigated by using the finite element method. The calculated transmittance spectra of the proposed metasurfaces demonstrate near-infrared transmittance dips with a sensitivity range of 120-700 nm RIU-1 in a dielectric constant (ɛ) ranging from 1.0-3.0. We illustrate that it is possible to increase their sensitivity in the detection of chemical and biological substances. The proposed metasurfaces supporting both core-medium sensitivity and bonded-mode resonances are desirable for label-free sensing applications.

  10. Application of Celluspots peptide arrays for the analysis of the binding specificity of epigenetic reading domains to modified histone tails

    Directory of Open Access Journals (Sweden)

    Dhayalan Arunkumar

    2011-08-01

    Full Text Available Abstract Background Epigenetic reading domains are involved in the regulation of gene expression and chromatin state by interacting with histones in a post-translational modification specific manner. A detailed knowledge of the target modifications of reading domains, including enhancing and inhibiting secondary modifications, will lead to a better understanding of the biological signaling processes mediated by reading domains. Results We describe the application of Celluspots peptide arrays which contain 384 histone peptides carrying 59 post translational modifications in different combinations as an inexpensive, reliable and fast method for initial screening for specific interactions of reading domains with modified histone peptides. To validate the method, we tested the binding specificities of seven known epigenetic reading domains on Celluspots peptide arrays, viz. the HP1ß and MPP8 Chromo domains, JMJD2A and 53BP1 Tudor domains, Dnmt3a PWWP domain, Rag2 PHD domain and BRD2 Bromo domain. In general, the binding results agreed with literature data with respect to the primary specificity of the reading domains, but in almost all cases we obtained additional new information concerning the influence of secondary modifications surrounding the target modification. Conclusions We conclude that Celluspots peptide arrays are powerful screening tools for studying the specificity of putative reading domains binding to modified histone peptides.

  11. Silicon Detector Arrays with Absolute Quantum Efficiency over 50% in the Far Ultraviolet for Single Photon Counting Applications

    CERN Document Server

    Nikzad, Shouleh; Greer, Frank; Jones, Todd; Jacquot, Blake; Monacos, Steve; Blacksberg, J; Hamden, Erika; Schiminovich, David; Martin, Chris; Morrissey, Patrick

    2011-01-01

    We have used Molecular Beam Epitaxy (MBE)-based delta doping technology to demonstrate near 100% internal quantum efficiency (QE) on silicon electron-multiplied Charge Coupled Devices (EMCCDs) for single photon counting detection applications. Furthermore, we have used precision techniques for depositing antireflection (AR) coatings by employing Atomic Layer Deposition (ALD) and demonstrated over 50% external QE in the far and near-ultraviolet in megapixel arrays. We have demonstrated that other device parameters such as dark current are unchanged after these processes. In this paper, we report on these results and briefly discuss the techniques and processes employed.

  12. Binary cobalt ferrite nanomesh arrays as the advanced binder-free electrode for applications in oxygen evolution reaction and supercapacitors

    Science.gov (United States)

    Liu, Li; Zhang, Huijuan; Mu, Yanping; Bai, Yuanjuan; Wang, Yu

    2016-09-01

    The porous CoFe2O4nanomesh arrays are successfully synthesized on nickel foam substrate through a high temperature and pressure hydrothermal method, following by the thermal post-treatment in air. The CoFe2O4 nanomesh arrays own numerous pores and large specific surface area, which is in favor of exposing more active sites. In consideration of the structural preponderances and versatility of the materials, the CoFe2O4 nanomesh arrays have been researched as the binder-free electrode materials for electrocatalysis and supercapacitors. When the CoFe2O4nanomesh arrays on nickel foam (CoFe2O4 NM-As/Ni) directly act as the free-binder catalyst toward catalyzing the oxygen evolution reaction (OER) of electrochemical water splitting, CoFe2O4 NM-As/Ni exhibits an admirable OER property with a low onset potential of 1.47 V(corresponding to the onset overpotential of 240 mV), a minimal overpotential (η10 = 253 mV), a small Tafel slope (44 mV dec-1), large anodic currents and long-term durability for 35 h in alkaline media. In addition, as an electrode of supercapacitors, CoFe2O4 NM-As/Ni obtains a desired specific capacitance (1426 F/g at the current density of 1 A/g), remarkable rate capability (1024 F/g at the current density of 20 A/g) and eminent capacitance retention (92.6% after 3000 cycles). The above results demonstrate the CoFe2O4 NM-As/Ni possesses great potential application in electrocatalysis and supercapacitors.

  13. Application of Ultrasonic Phased Array Technology to the Detection of Defect in Composite Stiffened-structures

    Science.gov (United States)

    Zhou, Yuan-Qi; Zhan, Li-Hua

    2016-05-01

    Composite stiffened-structure consists of the skin and stringer has been widely used in aircraft fuselage and wings. The main purpose of the article is to detect the composite material reinforced structure accurately and explore the relationship between defect formation and structural elements or curing process. Based on ultrasonic phased array inspection technology, the regularity of defects in the manufacture of composite materials are obtained, the correlation model between actual defects and nondestructive testing are established. The article find that the forming quality of deltoid area in T-stiffened structure is obviously improved by pre-curing, the defects of hat-stiffened structure are affected by the mandrel. The results show that the ultrasonic phased array inspection technology can be an effectively way for the detection of composite stiffened-structures, which become an important means to control the defects of composite and improve the quality of the product.

  14. Microfabrication technology for large LEKID arrays : from NIKA2 to future applications

    CERN Document Server

    Goupy, J; Benoit, A; Bourrion, O; Calvo, M; Catalano, A; Coiffard, G; Hoarau, C; Leclercq, S; Sueur, H Le; Macias-Perez, J; Monfardini, A; Peck, I; Schuster, K

    2016-01-01

    The Lumped Element Kinetic Inductance Detectors (LEKID)demonstrated full maturity in the NIKA (New IRAM KID Arrays)instrument. These results allow directly comparing LEKID performance with other competing technologies (TES, doped silicon) in the mm and sub-mm range. A continuing effort is ongoing to improve the microfabrication technologies and concepts in order to satisfy the requirements of new instruments. More precisely, future satellites dedicated to CMB (Cosmic Microwave Background) studies will require the same focal plane technology to cover, at least, the frequency range of 60 to 600 GHz. Aluminium LEKID developed for NIKA have so far demonstrated, under real telescope conditions, performance approaching photon-noise limitation in the band 120-300 GHz. By implementing superconducting bi-layers we recently demonstrated LEKID arrays working in the range 80-120 GHz and with sensitivities approaching the goals for CMB missions. NIKA itself (350 pixels) is followed by a more ambitious project requiring se...

  15. Application of neural networks to digital pulse shape analysis for an array of silicon strip detectors

    Science.gov (United States)

    Flores, J. L.; Martel, I.; Jiménez, R.; Galán, J.; Salmerón, P.

    2016-09-01

    The new generation of nuclear physics detectors that used to study nuclear reactions is considering the use of digital pulse shape analysis techniques (DPSA) to obtain the (A,Z) values of the reaction products impinging in solid state detectors. This technique can be an important tool for selecting the relevant reaction channels at the HYDE (HYbrid DEtector ball array) silicon array foreseen for the Low Energy Branch of the FAIR facility (Darmstadt, Germany). In this work we study the feasibility of using artificial neural networks (ANNs) for particle identification with silicon detectors. Multilayer Perceptron networks were trained and tested with recent experimental data, showing excellent identification capabilities with signals of several isotopes ranging from 12C up to 84Kr, yielding higher discrimination rates than any other previously reported.

  16. Plasmon enhanced broadband optical absorption in ultrathin silicon nanobowl array for photoactive devices applications

    Science.gov (United States)

    Sun, Rui-Nan; Peng, Kui-Qing; Hu, Bo; Hu, Ya; Zhang, Fu-Qiang; Lee, Shuit-Tong

    2015-07-01

    Both photonic and plasmonic nanostructures are key optical components of photoactive devices for light harvesting, enabling solar cells with significant thickness reduction, and light detectors capable of detecting photons with sub-band gap energies. In this work, we study the plasmon enhanced broadband light absorption and electrical properties of silicon nanobowl (SiNB) arrays. The SiNB-metal photonic-plasmonic nanostructure-based devices exhibited superior light-harvesting ability across a wide range of wavelengths up to the infrared regime well below the band edge of Si due to effective optical coupling between the SiNB array and incident sunlight, as well as electric field intensity enhancement around metal nanoparticles due to localized surface plasmon resonance. The photonic-plasmonic nanostructure is expected to result in infrared-light detectors and high-efficiency solar cells by extending light-harvesting to infrared frequencies.

  17. A CMB-based approach to mapping gravitational-wave backgrounds: application to pulsar timing arrays

    CERN Document Server

    Gair, Jonathan R; Taylor, Stephen; Mingarelli, Chiara M F

    2014-01-01

    We describe an alternative approach to the analysis of gravitational-wave backgrounds, based on the formalism used to characterise the polarisation of the cosmic microwave background. An arbitrary background can be decomposed into modes whose angular dependence on the sky is given by gradients and curls of spherical harmonics. We derive the pulsar timing overlap reduction function for individual modes, which are given by simple combinations of spherical harmonics evaluated at the pulsar locations. We show how these can be used to recover the components of an arbitrary background, giving explicit results for both isotropic and anisotropic uncorrelated backgrounds. We also find that the response of a pulsar timing array to curl modes is identically zero, so half of the gravitational-wave sky will never be observed using pulsar timing, no matter how many pulsars are included in the array. An isotropic uncorrelated background can be accurately represented using only three components, and so a search of this type ...

  18. Strong light absorption of self-organized 3-D nanospike arrays for photovoltaic applications.

    Science.gov (United States)

    Yu, Rui; Ching, Kwong-Lung; Lin, Qingfeng; Leung, Siu-Fung; Arcrossito, Diaz; Fan, Zhiyong

    2011-11-22

    Three-dimensional (3-D) nanostructures have been widely explored for efficient light trapping; however, many of the nanostructure fabrication processes reported have high cost and/or limited scalability. In this work, self-organized 3-D Al nanospike arrays were successfully fabricated on thin Al foils with controlled nanospike geometry such as height and pitch. Thereafter, photovoltaic materials of a-Si and CdTe thin films were conformally deposited on the nanospikes structures thus forming 3-D nanostructures with strong light absorption over a broad wavelength range and photon incident angle. Specifically, 100 nm-thick CdTe film on nanospikes showed 97% peak absorption, and up to 95% day-integrated sunlight absorption. These results indicate that self-organized 3-D Al nanospike arrays can serve as lightweight and low cost substrates for cost-effective thin film photovoltaics.

  19. Application of neural networks to digital pulse shape analysis for an array of silicon strip detectors

    Energy Technology Data Exchange (ETDEWEB)

    Flores, J.L. [Dpto de Ingeniería Eléctrica y Térmica, Universidad de Huelva (Spain); Martel, I. [Dpto de Física Aplicada, Universidad de Huelva (Spain); CERN, ISOLDE, CH 1211 Geneva, 23 (Switzerland); Jiménez, R. [Dpto de Ingeniería Electrónica, Sist. Informáticos y Automática, Universidad de Huelva (Spain); Galán, J., E-mail: jgalan@diesia.uhu.es [Dpto de Ingeniería Electrónica, Sist. Informáticos y Automática, Universidad de Huelva (Spain); Salmerón, P. [Dpto de Ingeniería Eléctrica y Térmica, Universidad de Huelva (Spain)

    2016-09-11

    The new generation of nuclear physics detectors that used to study nuclear reactions is considering the use of digital pulse shape analysis techniques (DPSA) to obtain the (A,Z) values of the reaction products impinging in solid state detectors. This technique can be an important tool for selecting the relevant reaction channels at the HYDE (HYbrid DEtector ball array) silicon array foreseen for the Low Energy Branch of the FAIR facility (Darmstadt, Germany). In this work we study the feasibility of using artificial neural networks (ANNs) for particle identification with silicon detectors. Multilayer Perceptron networks were trained and tested with recent experimental data, showing excellent identification capabilities with signals of several isotopes ranging from {sup 12}C up to {sup 84}Kr, yielding higher discrimination rates than any other previously reported.

  20. Electrochemically Created Highly Surface Roughened Ag Nanoplate Arrays for SERS Biosensing Applications

    OpenAIRE

    Yang, Shikuan; Slotcavage, Daniel; Mai, John D.; Guo, Feng; Li, Sixing; Zhao, Yanhui; Lei, Yong; Cameron, Craig E.; Huang, Tony Jun

    2014-01-01

    Highly surface-roughened Ag nanoplate arrays are fabricated using a simple electrodeposition and in situ electrocorrosion method with inorganic borate ions as capping agent. The electrocorrosion process is induced by a change in the local pH value during the electrochemical growth, which is used to intentionally carve the electrodeposited structures. The three dimensionally arranged Ag nanoplates are integrated with substantial surface-enhanced Raman scattering (SERS) hot spots and are free o...

  1. In situ fabrication of cleavable peptide arrays on polydimethylsiloxane and applications for kinase activity assays

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Huang-Han, E-mail: z10008047@email.ncku.edu.tw; Hsiao, Yu-Chieh, E-mail: s10076221@hotmail.com; Li, Jie-Ren, E-mail: jierenli@mail.ncku.edu.tw; Chen, Shu-Hui, E-mail: shchen@mail.ncku.edu.tw

    2015-03-20

    Highlights: • A novel approach for in situ fabrication of cleavable peptide arrays on polydimethylsiloxane (PDMS). • The first report of peptide synthesis on PDMS. • Use of the PDMS peptide array for developing sensitive chip-based kinase activity bioassays. • The on-chip synthesized peptides can be cleaved for MS detection. - Abstract: Polydimethylsiloxane (PDMS) is widely used for microfabrication and bioanalysis; however, its surface functionalization is limited due to the lack of active functional groups and incompatibility with many solvents. We presented a novel approach for in situ fabrication of cleavable peptide arrays on polydimethylsiloxane (PDMS) viatert-butyloxycarbonyl (t-Boc)/trifluoroacetic acid (TFA) chemistry using gold nanoparticles (AuNPs) as the anchor and a disulfide/amine terminated hetero-polyethylene glycol as the cleavable linker. The method was fine tuned to use reagents compatible with the PDMS. Using 5-mer pentapeptide, Trp{sub 5}, as a model, step-by-step covalent coupling during the reaction cycles was monitored by Attenuated total reflectance-Fourier transform infrared spectrometer (ATR-FTIR), X-ray photoelectron spectroscopy (XPS), or atomic force microscopy (AFM), and further confirmed by mass spectrometry (MS) detection of the cleaved peptides. Using such a method, heptapeptides of the PKA substrate, LRRASLG (Kemptide), and its point mutated analogs were fabricated in an array format for comparative studies of cAMP-dependent protein kinase (PKA) activity. Based on on-chip detection, Kemptide sequence exhibited the highest phosphorylation activity, which was detected to a 1.5-time lesser extent for the point mutated sequence (LRRGSLG) containing the recognition motif (RRXS), and was nearly undetectable for another point mutated sequence (LRLASLG) that lacked the recognition motif. These results indicate that the reported fabrication method is able to yield highly specific peptide sequences on PDMS, leading to a highly motif

  2. The Application of Phased Array Ultrasonic Techniques for Inspection of Railway Axles from Their End Face

    Science.gov (United States)

    Liaptsis, D.; Cooper, I.; Boyle, K.; Nicholson, P. I.

    2011-06-01

    As part of the development of a non destructive testing (NDT) system combining complementary inspection techniques, an inspection system based on phased array ultrasonic testing (PAUT) for detection of transverse cracking in solid railway axles is being developed. This paper presents the initial study, which includes the PAUT experimental setup and the initial results obtained after testing the system on railway axle blocks. The inspection of solid axles from their axle end face is investigated.

  3. Microplasma Channels and Large Arrays: Applications to Photomedicine, Microlasers, and Reactors on a Chip

    Science.gov (United States)

    2009-10-01

    npn plasma bipolar junction transistor in a simple external circuit.doping level of the base. Thus, the sheath electric field reinforces the built-in...PBJT) has been discovered. A hybrid plasma/semiconductor device in which a microplasma replaces the collector in an otherwise conventional npn ... transistor , the PBJT is capable of switching and modulating a plasma with a base-emitter voltage of < 1V. 2. Large arrays of microcavity plasma devices

  4. Frequency-domain photoacoustic phased array probe for biomedical imaging applications.

    Science.gov (United States)

    Telenkov, Sergey; Alwi, Rudolf; Mandelis, Andreas; Worthington, Arthur

    2011-12-01

    We report the development of a frequency-domain biomedical photoacoustic imaging system that utilizes a continuous-wave laser source with a custom intensity modulation pattern, ultrasonic phased array for signal detection, and processing coupled with a beam-forming algorithm for reconstruction of photoacoustic correlation images. Sensitivity to optical contrast was demonstrated using tissue-mimicking phantoms and in-vivo tissue samples.

  5. High-frequency Ultrasound Doppler System for Biomedical Applications with a 30 MHz Linear Array

    Science.gov (United States)

    Xu, Xiaochen; Sun, Lei; Cannata, Jonathan M.; Yen, Jesse T.; Shung, K. Kirk

    2008-01-01

    In this paper, we report the development of the first high-frequency (HF) pulsed-wave Doppler system using a 30 MHz linear array transducer to assess the cardiovascular functions in small animal. This array based pulsed-wave Doppler system included a 16-channel HF analog beamformer, a HF pulsed-wave Doppler module, timing circuits, HF bipolar pulsers, and analog front-ends. The beamformed echoes acquired by the 16 channel analog beamformer, were directly fed to the HF pulsed-wave Doppler module. Then the in-phase and quadrature-phase (IQ) audio Doppler signals were digitized by either a sound card or a Gage digitizer and stored in a PC. The Doppler spectrogram was displayed on a PC in real time. The two-way beam-widths were determined to be 160 μm to 320 μm when the array was electronically focused at different focal points at depths from 5–10 mm. A micro flow phantom, consisting of a polyimide tube with inner diameter of 127 μm, and the wire phantom were used to evaluate and calibrate the system. The results show that the system is capable of detecting motion velocity of the wire phantom as low as 0.1 mm/s, and detecting blood-mimicking flow velocity in the 127 μm tube lower than 7 mm/s. The system was subsequently used to measure the blood flow in vivo in two mouse abdominal superficial vessels with diameters of approximately 200 μm, and a mouse aorta close to the heart. These results demonstrated that this system may become an indispensable part of the current HF array based imaging systems for small animal studies. PMID:17993243

  6. SCUBA-2 instrument: an application of large-format superconducting bolometer arrays for submillimetre astronomy

    Science.gov (United States)

    Hollister, Matthew Ian

    2009-01-01

    This thesis concerns technical aspects related to the design and operation of the submillimetre common-user bolometer array 2 (SCUBA-2) instrument, a new wide-field camera for submillimetre astronomy currently undergoing commissioning on the James Clerk Maxwell Telescope on Mauna Kea, Hawaii. Offering unprecedented sensitivity and mapping capabilities, SCUBA-2 is expected to make a major impact in surveys of the sky at submillimetre wavelengths, a largely unexplored part of the electromagnetic spectrum, and provide better understanding of the formation and evolution of galaxies, stars and planets by providing large, unbiased samples of such objects. SCUBA-2 uses large arrays of bolometers, with superconducting transition edge sensors (TESs) as the temperature-sensitive element. TES devices are a relatively new technology, utilising the sharp resistance change between the normal and superconducting states to make a sensitive thermistor. Kilopixel arrays of such devices are multiplexed using superconducting quantum interference devices (SQUIDs). This thesis derives the key detector performance parameters, and presents analysis of engineering data to confirm the detector performance on array scales. A key issue for bolometric instruments for far infrared and submillimetre astronomy is the need to operate at extremely low temperatures in the sub-kelvin and millikelvin ranges to achieve the necessary detector sensitivity. This work describes the design, testing and performance of the liquid cryogen-free millikelvin cryostat, the first such instrument to be deployed for astronomy. Subsequent chapters detail the design and testing of a magnetic shielding scheme for the instrument, an important aspect of the operation of superconducting devices. Based on experience with the construction and testing of this instrument, a number of potential improvements for future instruments are presented and discussed.

  7. Synthesis of ZnO/Si Hierarchical Nanowire Arrays for Photocatalyst Application.

    Science.gov (United States)

    Li, Dingguo; Yan, Xiaolan; Lin, Chunhua; Huang, Shengli; Tian, Z Ryan; He, Bing; Yang, Qianqian; Yu, Binbin; He, Xu; Li, Jing; Wang, Jiayuan; Zhan, Huahan; Li, Shuping; Kang, Junyong

    2017-12-01

    ZnO/Si nanowire arrays with hierarchical architecture were synthesized by solution method with ZnO seed layer grown by atomic layer deposition and magnetron sputtering, respectively. The photocatalytic activity of the as-grown tree-like arrays was evaluated by the degradation of methylene blue under ultraviolet light at ambient temperature. The comparison of morphology, crystal structure, optical properties, and photocatalysis efficiency of the two samples in different seeding processes was conducted. It was found that the ZnO/Si nanowire arrays presented a larger surface area with better crystalline and more uniform ZnO branches on the whole sidewall of Si backbones for the seed layer by atomic layer deposition, which gained a strong light absorption as high as 98% in the ultraviolet and visible range. The samples were proven to have a potential use in photocatalyst, but suffered from photodissolution and memory effect. The mechanism of the photocatalysis was analyzed, and the stability and recycling ability were also evaluated and enhanced.

  8. Synthesis of ZnO/Si Hierarchical Nanowire Arrays for Photocatalyst Application

    Science.gov (United States)

    Li, Dingguo; Yan, Xiaolan; Lin, Chunhua; Huang, Shengli; Tian, Z. Ryan; He, Bing; Yang, Qianqian; Yu, Binbin; He, Xu; Li, Jing; Wang, Jiayuan; Zhan, Huahan; Li, Shuping; Kang, Junyong

    2017-01-01

    ZnO/Si nanowire arrays with hierarchical architecture were synthesized by solution method with ZnO seed layer grown by atomic layer deposition and magnetron sputtering, respectively. The photocatalytic activity of the as-grown tree-like arrays was evaluated by the degradation of methylene blue under ultraviolet light at ambient temperature. The comparison of morphology, crystal structure, optical properties, and photocatalysis efficiency of the two samples in different seeding processes was conducted. It was found that the ZnO/Si nanowire arrays presented a larger surface area with better crystalline and more uniform ZnO branches on the whole sidewall of Si backbones for the seed layer by atomic layer deposition, which gained a strong light absorption as high as 98% in the ultraviolet and visible range. The samples were proven to have a potential use in photocatalyst, but suffered from photodissolution and memory effect. The mechanism of the photocatalysis was analyzed, and the stability and recycling ability were also evaluated and enhanced.

  9. Photocatalytic TiO2 Nanorod Spheres and Arrays Compatible with Flexible Applications

    Directory of Open Access Journals (Sweden)

    Daniela Nunes

    2017-02-01

    Full Text Available In the present study, titanium dioxide nanostructures were synthesized through microwave irradiation. In a typical microwave synthesis, nanorod spheres in the powder form were simultaneously produced with nanorod arrays grown on polyethylene terephthalate (PET substrates. The syntheses were performed in water or ethanol with limited temperature at 80 °C and 200 °C. A simple and low-cost approach was used for the arrays growth, which involved a PET substrate with a zinc oxide seed layer deposited by spin-coating. X-ray diffraction (XRD and Raman spectroscopy revealed that synthesis in water result in a mixture of brookite and rutile phases, while using ethanol as solvent it was only observed the rutile phase. Scanning electron microscopy (SEM showed that the synthesized spheres were in the micrometer range appearing as aggregates of fine nanorods. The arrays maintained the sphere nanorod aggregate structures and the synthesis totally covered the flexible substrates. Transmission electron microscopy (TEM was used to identify the brookite structure. The optical band gaps of all materials have been determined from diffuse reflectance spectroscopy. Photocatalytic activity was assessed from rhodamine B degradation with remarkable degradability performance under ultraviolet (UV radiation. Reusability experiments were carried out for the best photocatalyst, which also revealed notable photocatalytic activity under solar radiation. The present study is an interesting and competitive alternative for the photocatalysts existing nowadays, as it simultaneously results in highly photoactive powders and flexible materials produced with low-cost synthesis routes such as microwave irradiation.

  10. Single-layer graphene-TiO2 nanotubes array heterojunction for ultraviolet photodetector application

    Science.gov (United States)

    Zhang, Deng-Yue; Ge, Cai-Wang; Wang, Jiu-Zhen; Zhang, Teng-Fei; Wu, Yu-Cheng; Liang, Feng-Xia

    2016-11-01

    In this work, we reported on the fabrication of a single-layer graphene (SLG)-TiO2 nanotube arrays (NTs) heterostructures ultraviolet photodetector (UVPD) by transferring chemical vapor deposition derived MLG on the surface of anodic TiO2NTs array. Through varying the annealing atmosphere and anodization time in the TiO2 synthesis procedure, the electronic and optoelectronic properties of the as-fabricated Schottky junction UVPD were studied. It was revealed that the anodic TiO2NTs annealed in air showed a better rectifying behavior and was highly sensitive to UV light irradiation. Further investigation found that the device performance of the UVPD can be readily modulated by the anodization time, and the anodic TiO2NTs with a medium tube length of 9.6 μm exhibits the highest device performance. These results demonstrated that the present SLG-TiO2NTs array hetero-junction UVPD will be highly promising for fabricating high-performance optoelectronic device and system in the future.

  11. Application of multi-channel photoelastic imaging technology in array type ultrasonic nondestructive testing

    Science.gov (United States)

    Fan, Zhen-zhong; Bi, Chao

    2015-08-01

    With the rapid development of modern nondestructive testing technologies, ultrasonic phased array and Ultrasonic array testing technology has been used widely, at the same time the propagation process of ultrasonic in the material becomes more and more complex. In order to make the ultrasonic propagation path become visible and researchers can observe the acoustic field directly, considering the properties of the ultrasonic as a stress wave, according to the theory of polarized light interference, a multi-channel dynamic photoelastic imaging system is developed successfully. The system can generate many kinds of focusing ultrasonic fields in optical specimen by controlling the ultrasonic transmission delay time of each equipment channel, and the system has the ability to simulate the acoustic field's focusing process of the ultrasonic phased array. The image shot by CCD camera reflects the propagation process of the acoustic field in the specimen, and the dynamic video is formed under control of the timing circuit, and the system has the ability to save the captured image in the computer.

  12. Application of Gas Sensor Arrays in Assessment of Wastewater Purification Effects

    Directory of Open Access Journals (Sweden)

    Łukasz Guz

    2014-12-01

    Full Text Available A gas sensor array consisting of eight metal oxide semiconductor (MOS type gas sensors was evaluated for its ability for assessment of the selected wastewater parameters. Municipal wastewater was collected in a wastewater treatment plant (WWTP in a primary sedimentation tank and was treated in a laboratory-scale sequential batch reactor (SBR. A comparison of the gas sensor array (electronic nose response to the standard physical-chemical parameters of treated wastewater was performed. To analyze the measurement results, artificial neural networks were used. E-nose—gas sensors array and artificial neural networks proved to be a suitable method for the monitoring of treated wastewater quality. Neural networks used for data validation showed high correlation between the electronic nose readouts and: (I chemical oxygen demand (COD (r = 0.988; (II total suspended solids (TSS (r = 0.938; (III turbidity (r = 0.940; (IV pH (r = 0.554; (V nitrogen compounds: N-NO3 (r = 0.958, N-NO2 (r = 0.869 and N-NH3 (r = 0.978; (VI and volatile organic compounds (VOC (r = 0.987. Good correlation of the abovementioned parameters are observed under stable treatment conditions in a laboratory batch reactor.

  13. Glad nanostructured arrays with enhanced carrier collection and light trapping for photoconductive and photovoltaic device applications

    Science.gov (United States)

    Cansizoglu, Hilal

    Solar energy harvesting has been of great interest for researchers over the past 50 years. Main emphasis has been on developing high quality materials with low defect density and proper band gaps. However, high cost of bulk materials and insufficient light absorption in thin films led to utilization of semiconductor nanostructures in photovoltaics and photonics. Light trapping abilities of nanostructures can provide high optical absorption whereas core/shell nanostructured arrays can allow enhanced charge carrier collection. However, most of the nanofabrication methods that can produce uniform nanostructure geometries are limited in materials, dimensions, and not compatible with industrial production systems. Therefore, it is essential to develop innovative low-cost fabrication approaches that can address these issues. The primary goal of this project is to investigate light trapping and carrier collection properties of glancing angle deposited (GLAD) nanostructured arrays for high-efficiency, low-cost photoconductive and photovoltaic devices using characterization techniques including scanning electron microscopy (SEM), transmission electron microscopy (TEM), ultraviolet-visible-near infrared (UV-vis-NIR) spectroscopy and time resolved photocurrent measurements. Indium sulfide (In2S3) has been chosen as a model material system in this study. GLAD nanostructured arrays of vertical rods, screws, springs, zigzags and tilted rods were fabricated and characterized. A strong dependence of optical absorption on the shapes of nanostructures is observed from UV-vis-NIR spectroscopy. A simulation study using finite difference time domain (FDTD) shows that introducing 3D geometry results in diffuse scattering of light and leads to high optical absorption. Monte Carlo simulations were conducted to determine a simple and scalable fabrication technique for conformal and uniform shell coatings. The results suggest that an atomic flux with angular distribution, which can be

  14. Cryogenic phased-array for high resolution magnetic resonance imaging (MRI); assessment of clinical and research applications

    Science.gov (United States)

    Ip, Flora S.

    Magnetic Resonance (MR) imaging is one of the most powerful tools in diagnostic medicine for soft tissue imaging. Image acquisition techniques and hardware receivers are very important in achieving high contrast and high resolution MR images. An aim of this dissertation is to design single and multi-element room and cryogenic temperature arrays and make assessments of their signal-to-noise ratio (SNR) and SNR gain. In this dissertation, four sets of MR receiver coils are built. They are the receiver-only cryo-coils that are not commercially available. A tuning and matching circuit is attached to each coil. The tuning and matching circuits are simple; however, each device component has to operate at a high magnetic field and cryogenic temperature environment. Remote DC bias of the varactor controls the tuning and matching outside the scanner room. Active detuning of the resonator is done by two p-i-n junction (PIN) diodes. Cooling of the receiver is done by a customized liquid nitrogen cryostat. The first application is to build a 3-Tesla 2x1 horseshoe counter-rotating current (CRC) cryogenic array to image the tibia in a human body. With significant increase in SNR, the surface coil should deliver high contrast and resolution images that can show the trabecular bone and bone marrow structure. This structural image will be used to model the mechanical strength of the bone as well as bone density and chance of fracture. The planar CRC is a unique design of this surface array. The second application is to modify the coil design to 7-Tesla to study the growth of infant rhesus monkey eyes. Fast scan MR images of the infant monkey heads are taken for monitoring shapes of their eyeballs. The monkeys are induced with shortsightedness by eye lenses, and they are scanned periodically to get images of their eyeballs. The field-of-view (FOV) of these images is about five centimeters and the area of interest is two centimeters deep from the surface. Because of these reasons

  15. Controlled synthesis of ZnO branched nanorod arrays by hierarchical solution growth and application in dye-sensitized solar cells

    Energy Technology Data Exchange (ETDEWEB)

    Fang Xiaoming, E-mail: cexmfang@scut.edu.cn; Peng Lihua; Shang Xiaoying; Zhang Zhengguo

    2011-07-29

    We demonstrate the controlled synthesis of ZnO branched nanorod arrays on fluorine-doped SnO{sub 2}-coated glass substrates by the hierarchical solution growth method. In the secondary growth, the concentration of Zn(NO{sub 3}){sub 2}/hexamethylenetetramine plays an important role in controlling the morphology of the branched nanorod arrays, besides that of diaminopropane used as a structure-directing agent to induce the growth of branches. The population density and morphology of the branched nanorod arrays depend on those of the nanorod arrays obtained from the primary growth, which can be modulated though the concentration of Zn(NO{sub 3}){sub 2}/hexamethylenetetramine in the primary growth solution. The dye-sensitized ZnO branched nanorod arrays exhibit much stronger optical absorption as compared with its corresponding primary nanorod arrays, suggesting that the addition of the branches improves light harvesting. The dye-sensitized solar cell based on the optimized ZnO branched nanorod array reaches a conversion efficiency of 1.66% under the light radiation of 1000 W/m{sup 2}. The branched nanorod arrays can also be applied in other application fields of ZnO.

  16. Triple Band Parasitic Array Antenna for C-X-Ku-Band Application Using Out-of-Phase Coupling Approach

    Directory of Open Access Journals (Sweden)

    Anubhuti Khare

    2014-01-01

    Full Text Available Triple band parasitic array antenna for C-X-Ku-band application is presented. The proposed antenna is designed using the concept of parasitic array and out-of-phase coupling approach. The objects of research are to optimize total inductance of geometry by using out-of-phase inductance approach. The out of phase inductance of geometry consists of using two U-patches novel director on the left side of geometry, appropriate dimension of ground plan, and gap coupling between parasitic and active patches. The dimension of the ground plan geometry is 0.5λ mil × 0.5154λ mil. The usable impedance bandwidth of design antenna is “5.8 GHz to 18 GHz” (102% impedance bandwidth and gain enhancement is up to 11.8 dBi. The proposed antenna can be used for X-Ku band and C-band applications. Both simulated and measured results are presented, which are in good agreement. The proposed antenna was fabricated with a thin copper layer printed on a thin lossy FR4 substrate for low-cost production.

  17. SAW synthesis with IDTs array and the inverse filter: toward a versatile SAW toolbox for microfluidics and biological applications

    CERN Document Server

    Riaud, Antoine; Thomas, Jean-Louis; Matar, Olivier Bou

    2016-01-01

    Surface acoustic waves (SAWs) are versatile tools to manipulate fluids at small scales for microfluidics and bio- logical applications. A non-exhaustive list of operations that can be performed with SAW includes sessile droplet displacement, atomization, division and merging but also the actuation of fluids embedded in microchannels or the manipulation of suspended particles. However, each of these operations requires a specific design of the wave generation system, the so-called interdigitated transducers (IDTs). Depending on the application, it might indeed be necessary to generate focused or plane, propagating or standing, aligned or shifted waves. Furthermore, the possibilities offered by more complex wave-fields such as acoustical vortices for particle tweezing and liquid twisting cannot be explored with classical IDTs. In this paper, we show that the inverse filter technique coupled with an interdigitated transducers array (IDTA) enables to synthesize all classical wave-fields used in microfluidics and ...

  18. Fabrication, characterization and applications of flexible vertical InGaN micro-light emitting diode arrays.

    Science.gov (United States)

    Tian, Pengfei; McKendry, Jonathan J D; Gu, Erdan; Chen, Zhizhong; Sun, Yongjian; Zhang, Guoyi; Dawson, Martin D; Liu, Ran

    2016-01-11

    Flexible vertical InGaN micro-light emitting diode (micro-LED) arrays have been fabricated and characterized for potential applications in flexible micro-displays and visible light communication. The LED epitaxial layers were transferred from initial sapphire substrates to flexible AuSn substrates by metal bonding and laser lift off techniques. The current versus voltage characteristics of flexible micro-LEDs degraded after bending the devices, but the electroluminescence spectra show little shift even under a very small bending radius 3 mm. The high thermal conductivity of flexible metal substrates enables high thermal saturation current density and high light output power of the flexible micro-LEDs, benefiting the potential applications in flexible high-brightness micro-displays and high-speed visible light communication. We have achieved ~40 MHz modulation bandwidth and 120 Mbit/s data transmission speed for a typical flexible micro-LED.

  19. The preparation of highly ordered TiO2 nanotube arrays by an anodization method and their applications.

    Science.gov (United States)

    Jun, Yongseok; Park, Jong Hyeok; Kang, Man Gu

    2012-07-04

    The tubular-shaped nanostructure of TiO(2) is very interesting, and highly ordered arrays of TiO(2) nanotubes (TNTs) can be easily fabricated by anodization of the Ti substrate in specific electrolytes. Here in this feature article, we review synthesis methods for various TNTs including normal, alloy, and architectural forms such as bamboos, lace, and flowers. Specific nanosize architectures such as bamboo and lace types can be regulated by alternating voltage and further anodizing. In order to extend light response of TNTs to visible solar spectra, various dopings of specific elements have been discussed. The normal and modified TNTs are suggested for applications such as dye sensitized solar cells, water splitting, photocatalytic degradation of pollutants, CO(2) reduction, sensors, energy storage devices including Li ion batteries and supercapacitors, and other applications such as flexible substrate and biomaterials.

  20. Evaluation of a SiPM array detector coupled to a LFS-3 pixellated scintillator for PET/MR applications

    Energy Technology Data Exchange (ETDEWEB)

    David, Stratos; Fysikopoulos, Eleftherios [Technological Educational Institute of Athens (Greece); Georgiou, Maria [Technological Educational Institute of Athens (Greece); Department of Medical School, University of Thessaly, Larissa (Greece); Loudos, George [Technological Educational Institute of Athens (Greece)

    2015-05-18

    SiPM arrays are insensitive to magnetic fields and thus good candidates for hybrid PET/MR imaging systems. Moreover, due to their small size and flexibility can be used in dedicated small field of view small animal imaging detectors and especially in head PET/MR studies in mice. Co-doped LFS-3 scintillator crystals have higher light yield and slightly faster response than that of LSO:Ce mainly due to the co-doped activation of emission centers with varying materials such as Ce, Gd, Sc, Y, La, Tb, or Ca distributed at the molecular scale through the lutetium silicate crystal host. The purpose of this study is to investigate the behavior of the SensL ArraySL-4 (4x4 element array of 3x3 mm{sup 2} silicon photomultipliers) optical detector coupled to a 6x6 LFS-3 scintillator array, with 2x2x5 mm{sup 3} crystal size elements, for possible applications in small field of view PET/MR imaging detectors. We have designed a symmetric resistive charge division circuit to read out the signal outputs of 4x4 pixel SiPM array reducing the 16 pixel outputs of the photodetector to 4 position signals. The 4 position signals were digitized using free running Analog to Digital Converters. The ADCs sampling rate was 50 MHz. An FPGA (Spartan 6 LX150T) was used for triggering and digital signal processing of the pulses. Experimental evaluation was carried out with {sup 22}Na radioactive source and the parameters studied where energy resolution and peak to valley ratio. The first preliminary results of the evaluation shows a clear visualization of the discrete 2x2x5 mm{sup 3} LFS-3 scintillator elements. The mean peak to valley ratio of the horizontal profiles on the raw image was measured equal to 11 while the energy resolution was calculated equal to 30% at the central pixels.

  1. Strong adhesion and friction coupling in hierarchical carbon nanotube arrays for dry adhesive applications.

    Science.gov (United States)

    Hu, Shihao; Xia, Zhenhai; Gao, Xiaosheng

    2012-04-01

    The adhesion and friction coupling of hierarchical carbon nanotube arrays was investigated with a hierarchical multiscale modeling approach. At device level, vertically aligned carbon nanotube (VA-CNT) arrays with laterally distributed segments on top were analyzed via finite element methods to determine the macroscopic adhesion and friction force coupling. At the nanoscale, molecular dynamics simulation was performed to explore the origin of the adhesion enhancement due to the existence of the laterally distributed CNTs. The results show interfacial adhesion force is drastically promoted by interfacial friction force when a single lateral CNT is being peeled from an amorphous carbon substrate. By fitting with experiments, we find that under shearing loadings the maximum interfacial adhesion force is increased by a factor of ~5, compared to that under normal loadings. Pre-existing surface asperities of the substrate have proven to be the source of generating large interfacial friction, which in turn results in an enhanced adhesion. The critical peeling angles derived from the continuum and nano- levels are comparable to those of geckos and other synthetic adhesives. Our analysis indicates that the adhesion enhancement factor of the hierarchically structured VA-CNT arrays could be further increased by uniformly orienting the laterally distributed CNTs on top. Most importantly, a significant buckling of the lateral CNT at peeling front is captured on the molecular level, which provides a basis for the fundamental understanding of local deformation, and failure mechanisms of nanofibrillar structures. This work gives an insight into the durability issues that prevent the success of artificial dry adhesives.

  2. Fabrication of polyaniline/graphene/titania nanotube arrays nanocomposite and their application in supercapacitors

    Energy Technology Data Exchange (ETDEWEB)

    Huang, Hua; Gan, Mengyu; Ma, Li, E-mail: mlsys607@126.com; Yu, Lei; Hu, Haifeng; Yang, Fangfang; Li, Yanjun; Ge, Chengqiang

    2015-05-05

    Highlights: • The PANI/graphene/TiO{sub 2} nanotube arrays were fabricated firstly. • The composite shows a high specific capacitance and superior rate capability. • A high capacity retention rate of 91% after 1000 cycles can be achieved. • The composite possesses a novel three-dimensional (3D) highly ordered nanostructure. • TiO{sub 2} NTs enhance the adhesion between PANI and substrate. - Abstract: Polyaniline/graphene/titania nanotube arrays (PGTNs) nanocomposite as a supercapacitor electrode is fabricated by in-situ polymerization for the first time. Herein, the PGTNs possesses a novel three-dimensional (3D) highly ordered hybrid nanostructure consisting of coaxial polyaniline (PANI)/TiO{sub 2} nanotube arrays and graphene coated with PANI on the surface of TiO{sub 2} in some degree. The synthesized three-dimensional PGTNs is characterized by scanning electron microscopy (SEM), Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD) and Raman spectroscopy, and its electrochemical performance is measured by cyclic voltammetry (CV), electrochemical impedance spectroscopy (EIS) and galvanostatic charge/discharge. The maximum specific capacitance of PGTNs is as high as 933 F g{sup −1} at current density of 0.75 A g{sup −1} and the specific capacitance retains 91% of the initial after constant charge–discharge 1000 cycles. The improved electrochemical performance is due to the 3D nanostructure, which effectively prevents the mechanical deformation during the fast charge/discharge process and favors the diffusion of the electrolyte ions into the inner region of active materials. The composite electrode material is very promising for the next generation of high-performance electrochemical supercapacitors.

  3. Reversible Programmable Logic Array (RPLA) using Feynman & MUX Gates for Low Power Industrial Applications

    CERN Document Server

    Singla, Pradeep

    2012-01-01

    This paper present the research work directed towards the design of reversible programmable logic array using very high speed integrated circuit hardware description language (VHDL). Reversible logic circuits have significant importance in bioinformatics, optical information processing, CMOS design etc. In this paper the authors propose the design of new RPLA using Feynman & MUX gate.VHDL based codes of reversible gates with simulating results are shown .This proposed RPLA may be further used to design any reversible logic function or Boolean function (Adder, subtractor etc.) which dissipate very low or ideally no heat.

  4. [Application of FTIR array of correlation coefficient to the identification of Salvia miltiorrhizae Bge].

    Science.gov (United States)

    Chu, De-Ren; Zhou, Qun; Yu, Lu; Sun, Su-Qin

    2007-09-01

    Based on the fingerprint infrared spectrum database, array of correlation coefficient has been first applied to identify traditional Chinese medicine slviae miltiorrhizae Bge. from different producing areas and growing environments. The result showed that the setting of high correlation coefficient in particular ranges of spectrum could differentiate the producing area of Slviae, while the setting of low correlation coefficient threshold of R5 to R7 ranges could identify wild or cultivated samples. This approach seems to be not only a simple but also an accurate method for identifying the character of different Slviae.

  5. Application of Global Dynamic Reconfiguration in Artificial Neural Network System based on Field Programmable Gate Array

    Institute of Scientific and Technical Information of China (English)

    LI Wei; WANG Wei; MA Yi-mei; WANG Jin-hai

    2008-01-01

    Presented is a global dynamic reconfiguration design of an artificial neural network based on field programmable gate array(FPGA). Discussed are the dynamic reconfiguration principles and methods. Proposed is a global dynamic reconfiguration scheme using Xilinx FPGA and platform flash. Using the revision capabilities of Xilinx XCF32P platform flash, an artificial neural network based on Xilinx XC2V30P Virtex-Ⅱ can be reconfigured dynamically from back propagation(BP) learning algorithms to BP network testing algorithms. The experimental results indicate that the scheme is feasible, and that, using dynamic reconfiguration technology, FPGA resource utilization can be reduced remarkably.

  6. Insights into cancer severity from biomolecular interaction mechanisms

    Science.gov (United States)

    Raimondi, Francesco; Singh, Gurdeep; Betts, Matthew J.; Apic, Gordana; Vukotic, Ranka; Andreone, Pietro; Stein, Lincoln; Russell, Robert B.

    2016-01-01

    To attain a deeper understanding of diseases like cancer, it is critical to couple genetics with biomolecular mechanisms. High-throughput sequencing has identified thousands of somatic mutations across dozens of cancers, and there is a pressing need to identify the few that are pathologically relevant. Here we use protein structure and interaction data to interrogate nonsynonymous somatic cancer mutations, identifying a set of 213 molecular interfaces (protein-protein, -small molecule or –nucleic acid) most often perturbed in cancer, highlighting several potentially novel cancer genes. Over half of these interfaces involve protein-small-molecule interactions highlighting their overall importance in cancer. We found distinct differences in the predominance of perturbed interfaces between cancers and histological subtypes and presence or absence of certain interfaces appears to correlate with cancer severity. PMID:27698488

  7. Structure and Interactions of Isolated Biomolecular Building Blocks.

    Science.gov (United States)

    de Vries, Mattanjah

    2006-03-01

    We investigate biomolecular building blocks and their clusters with each other and with water on a single molecular level. The motivation is the need to distinguish between intrinsic molecular properties and those that result from the biological environment. This is achieved by a combination of laser desorption and jet cooling, applied to aromatic amino acids, small peptides containing those, nucleobases and nucleosides. This approach is coupled with a number of laser spectroscopic techniques, including resonant multi-photon ionization, spectral hole burning and infra-red ion-dip spectroscopy. We will discuss examples illustrating how information can be obtained on spatial structure of individual biomolecules, including peptide conformations and details of DNA base-pairing.

  8. Orientation of biomolecular assemblies in a microfluidic jet

    Energy Technology Data Exchange (ETDEWEB)

    Priebe, M; Kalbfleisch, S; Tolkiehn, M; Salditt, T [Institut fuer Roentgenphysik, Universitaet Goettingen, Goettingen (Germany); Koester, S [Courant Research Centre Nano-Spectroscopy and X-Ray Imaging, Universitaet Goettingen, Goettingen (Germany); Abel, B [Institut fuer Physikalische Chemie, Universitaet Goettingen, Goettingen (Germany); Davies, R J, E-mail: tsalditt@gwdg.d [ID13, ESRF, Grenoble (France)

    2010-04-15

    We have investigated multilamellar lipid assemblies in a microfluidic jet, operating at high shear rates of the order of 10{sup 7} s{sup -1}. Compared to classical Couette cells or rheometers, the shear rate was increased by at least 2-3 orders of magnitude, and the sample volume was scaled down correspondingly. At the same time, the jet is characterized by high extensional stress due to elongational flow. A focused synchrotron x-ray beam was used to measure the structure and orientation of the lipid assemblies in the jet. The diffraction patterns indicate conventional multilamellar phases, aligned with the membrane normals oriented along the velocity gradient of the jet. The results indicate that the setup may be well suited for coherent diffractive imaging of oriented biomolecular assemblies and macromolecules at the future x-ray free electron laser (XFEL) sources.

  9. Biomolecular Network-Based Synergistic Drug Combination Discovery

    Directory of Open Access Journals (Sweden)

    Xiangyi Li

    2016-01-01

    Full Text Available Drug combination is a powerful and promising approach for complex disease therapy such as cancer and cardiovascular disease. However, the number of synergistic drug combinations approved by the Food and Drug Administration is very small. To bridge the gap between urgent need and low yield, researchers have constructed various models to identify synergistic drug combinations. Among these models, biomolecular network-based model is outstanding because of its ability to reflect and illustrate the relationships among drugs, disease-related genes, therapeutic targets, and disease-specific signaling pathways as a system. In this review, we analyzed and classified models for synergistic drug combination prediction in recent decade according to their respective algorithms. Besides, we collected useful resources including databases and analysis tools for synergistic drug combination prediction. It should provide a quick resource for computational biologists who work with network medicine or synergistic drug combination designing.

  10. Biomolecular decision-making process for self assembly.

    Energy Technology Data Exchange (ETDEWEB)

    Osbourn, Gordon Cecil

    2005-01-01

    The brain is often identified with decision-making processes in the biological world. In fact, single cells, single macromolecules (proteins) and populations of molecules also make simple decisions. These decision processes are essential to survival and to the biological self-assembly and self-repair processes that we seek to emulate. How do these tiny systems make effective decisions? How do they make decisions in concert with a cooperative network of other molecules or cells? How can we emulate the decision-making behaviors of small-scale biological systems to program and self-assemble microsystems? This LDRD supported research to answer these questions. Our work included modeling and simulation of protein populations to help us understand, mimic, and categorize molecular decision-making mechanisms that nonequilibrium systems can exhibit. This work is an early step towards mimicking such nanoscale and microscale biomolecular decision-making processes in inorganic systems.

  11. The biomolecular corona of nanoparticles in circulating biological media

    Science.gov (United States)

    Pozzi, D.; Caracciolo, G.; Digiacomo, L.; Colapicchioni, V.; Palchetti, S.; Capriotti, A. L.; Cavaliere, C.; Zenezini Chiozzi, R.; Puglisi, A.; Laganà, A.

    2015-08-01

    When nanoparticles come into contact with biological media, they are covered by a biomolecular `corona', which confers a new identity to the particles. In all the studies reported so far nanoparticles are incubated with isolated plasma or serum that are used as a model for protein adsorption. Anyway, bodily fluids are dynamic in nature so the question arises on whether the incubation protocol, i.e. dynamic vs. static incubation, could affect the composition and structure of the biomolecular corona. Here we let multicomponent liposomes interact with fetal bovine serum (FBS) both statically and dynamically, i.e. in contact with circulating FBS (~40 cm s-1). The structure and composition of the liposome-protein corona, as determined by dynamic light scattering, electrophoretic light scattering and liquid chromatography tandem mass spectrometry, were found to be dependent on the incubation protocol. Specifically, following dynamic exposure to FBS, multicomponent liposomes were less enriched in complement proteins and appreciably more enriched in apolipoproteins and acute phase proteins (e.g. alpha-1-antitrypsin and inter-alpha-trypsin inhibitor heavy chain H3) that are involved in relevant interactions between nanoparticles and living systems. Supported by our results, we speculate that efficient predictive modeling of nanoparticle behavior in vivo will require accurate knowledge of nanoparticle-specific protein fingerprints in circulating biological media.When nanoparticles come into contact with biological media, they are covered by a biomolecular `corona', which confers a new identity to the particles. In all the studies reported so far nanoparticles are incubated with isolated plasma or serum that are used as a model for protein adsorption. Anyway, bodily fluids are dynamic in nature so the question arises on whether the incubation protocol, i.e. dynamic vs. static incubation, could affect the composition and structure of the biomolecular corona. Here we let

  12. Computational and theoretical aspects of biomolecular structure and dynamics

    Energy Technology Data Exchange (ETDEWEB)

    Garcia, A.E.; Berendzen, J.; Catasti, P., Chen, X. [and others

    1996-09-01

    This is the final report for a project that sought to evaluate and develop theoretical, and computational bases for designing, performing, and analyzing experimental studies in structural biology. Simulations of large biomolecular systems in solution, hydrophobic interactions, and quantum chemical calculations for large systems have been performed. We have developed a code that implements the Fast Multipole Algorithm (FMA) that scales linearly in the number of particles simulated in a large system. New methods have been developed for the analysis of multidimensional NMR data in order to obtain high resolution atomic structures. These methods have been applied to the study of DNA sequences in the human centromere, sequences linked to genetic diseases, and the dynamics and structure of myoglobin.

  13. Quantum dynamics of bio-molecular systems in noisy environments

    CERN Document Server

    Plenio, M B

    2012-01-01

    We discuss three different aspects of the quantum dynamics of bio-molecular systems and more generally complex networks in the presence of strongly coupled environments. Firstly, we make a case for the systematic study of fundamental structural elements underlying the quantum dynamics of these systems, identify such elements and explore the resulting interplay of quantum dynamics and environmental decoherence. Secondly, we critically examine some existing approaches to the numerical description of system-environment interaction in the non-perturbative regime and present a promising new method that can overcome some limitations of existing methods. Thirdly, we present an approach towards deciding and quantifying the non-classicality of the action of the environment and the observed system-dynamics. We stress the relevance of these tools for strengthening the interplay between theoretical and experimental research in this field.

  14. Design and implementation of a biomolecular concentration tracker.

    Science.gov (United States)

    Hsiao, Victoria; de los Santos, Emmanuel L C; Whitaker, Weston R; Dueber, John E; Murray, Richard M

    2015-02-20

    As a field, synthetic biology strives to engineer increasingly complex artificial systems in living cells. Active feedback in closed loop systems offers a dynamic and adaptive way to ensure constant relative activity independent of intrinsic and extrinsic noise. In this work, we use synthetic protein scaffolds as a modular and tunable mechanism for concentration tracking through negative feedback. Input to the circuit initiates scaffold production, leading to colocalization of a two-component system and resulting in the production of an inhibitory antiscaffold protein. Using a combination of modeling and experimental work, we show that the biomolecular concentration tracker circuit achieves dynamic protein concentration tracking in Escherichia coli and that steady state outputs can be tuned.

  15. Ion irradiation and biomolecular radiation damage II. Indirect effect

    CERN Document Server

    Wang, Wei; Su, Wenhui

    2010-01-01

    It has been reported that damage of genome in a living cell by ionizing radiation is about one-third direct and two-thirds indirect. The former which has been introduced in our last paper, concerns direct energy deposition and ionizing reactions in the biomolecules; the latter results from radiation induced reactive species (mainly radicals) in the medium (mainly water) surrounding the biomolecules. In this review, a short description of ion implantation induced radical formation in water is presented. Then we summarize the aqueous radical reaction chemistry of DNA, protein and their components, followed by a brief introduction of biomolecular damage induced by secondary particles (ions and electron). Some downstream biological effects are also discussed.

  16. Fabrication and Electrochemical Characterization of Micro- and Nanoelectrode Arrays for Sensor Applications

    Energy Technology Data Exchange (ETDEWEB)

    Said, Nur Azura Mohd; Twomey, Karen; Ogurtsov, Vladimir I; Herzog, Gregoire [Tyndall National Institute, Lee Maltings, University College Cork, Cork (Ireland); Arrigan, Damien W M, E-mail: gregoire.herzog@tyndall.ie [Nanochemistry Research Institute, Department of Chemistry, Curtin University, Perth (Australia)

    2011-08-17

    This paper describes the fabrication of microelectrode arrays, with two different geometries: disc (Designs d1 and d2) and band (Designs b1, b2 and b3) using three critical dimensions (100 nm, 1 {mu}m and 10 {mu}m) leading to 5 different designs, fabricated by the combination of UV photolithographic and e-beam lithographic techniques. Three silicon nitride layer thicknesses (200, 300 and 500 nm) were chosen to determine an optimized transducer design and fabrication process. Cyclic voltammetry characterisation using a simple redox probe ion, ferreocenecarboxylic acid in phosphate buffered saline electrolyte solution, demonstrated steady-state voltammetric curves for d1, d2, b1 and b2. A good agreement between experimental and theoretical data is found for devices d1, d2, b1 and b2. The experimental current for b3, on the other hand, is much lower compared to the calculated one- perhaps due to the overlapping of the diffusion layers of neighbouring microelectrodes in the array.

  17. Microfabrication Technology for Large Lekid Arrays: From Nika2 to Future Applications

    Science.gov (United States)

    Goupy, J.; Adane, A.; Benoit, A.; Bourrion, O.; Calvo, M.; Catalano, A.; Coiffard, G.; Hoarau, C.; Leclercq, S.; Le Sueur, H.; Macias-Perez, J.; Monfardini, A.; Peck, I.; Schuster, K.

    2016-08-01

    The lumped element kinetic inductance detectors (LEKID) demonstrated full maturity in the New IRAM KID Arrays (NIKA) instrument. These results allow directly comparing LEKID performance with other competing technologies (TES, doped silicon) in the mm and sub-mm range. A continuing effort is ongoing to improve the microfabrication technologies and concepts in order to satisfy the requirements of new instruments. More precisely, future satellites dedicated to cosmic microwave background (CMB) studies will require the same focal plane technology to cover, at least, the frequency range of 60-600 GHz. Aluminium LEKID developed for NIKA have so far demonstrated, under real telescope conditions, a performance approaching photon noise limitation in the band 120-300 GHz. By implementing superconducting bi-layers, we recently demonstrated LEKID arrays working in the range 80-120 GHz and with sensitivities approaching the goals for CMB missions. NIKA itself (350 pixels) is followed by a more ambitious project requiring several thousand (3000-5000) pixels. NIKA2 has been installed in October 2015 at the IRAM 30-m telescope. We will describe in detail the technological improvements that allowed a relatively harmless tenfold up-scaling in pixels count without degrading the initial sensitivity. In particular, we will briefly describe a solution to simplify the difficult fabrication step linked to the slot-line propagation mode in coplanar waveguide.

  18. Reconfigurable Plasma Antenna Array by Using Fluorescent Tube for Wi-Fi Application

    Directory of Open Access Journals (Sweden)

    H. Ja’afar

    2016-06-01

    Full Text Available This paper presents a new design of reconfigurable plasma antenna array using commercial fluorescent tube. A round shape reconfigurable plasma antenna array is proposed to collimate beam radiated by an omnidirectional antenna (monopole antenna operates at 2.4GHz in particular direction. The antenna design is consisted of monopole antenna located at the center of circular aluminum ground. The monopole antenna is surrounded by a cylindrical shell of conducting plasma. The plasma shield consists of 12 commercial fluorescent tubes aligned in series containing a mixture of Argon gas and mercury vapor which upon electrification forms plasma columns. The plasma behaves as a conductor and acts as a reflector in radiation, in the condition where plasma frequency,ωp is higher than operating frequency. From this concepts, when all plasma elements are activated or switched to ON, the radiation signal from monopole antenna will trapped inside the plasma blanket and meanwhile when one or more plasma elements is deactivated (switched OFF, the radiation from monopole antenna will escape. This antenna has the capability to change its patterns with beam direction at 0°, 30°, 60°, 90°, 120°, 150°, 180°, 210°, 240°, 270°, 300° and 330° at frequency 2.4 GHz. The proposed antenna has been successfully fabricated and measured with conclusive results.

  19. Application of Neuro-Wavelet Algorithm in Ultrasonic-Phased Array Nondestructive Testing of Polyethylene Pipelines

    Directory of Open Access Journals (Sweden)

    Reza Bohlouli

    2012-01-01

    Full Text Available Polyethylene (PE pipelines with electrofusion (EF joining is an essential method of transportation of gas energy. EF joints are weak points for leakage and therefore, Nondestructive testing (NDT methods including ultrasonic array technology are necessary. This paper presents a practical NDT method of fusion joints of polyethylene piping using intelligent ultrasonic image processing techniques. In the proposed method, to detect the defects of electrofusion joints, the NDT is applied based on an ANN-Wavelet method as a digital image processing technique. The proposed approach includes four steps. First an ultrasonic-phased array technique is used to provide real time images of high resolution. In the second step, the images are preprocessed by digital image processing techniques for noise reduction and detection of ROI (Region of Interest. Furthermore, to make more improvement on the images, mathematical morphology techniques such as dilation and erosion are applied. In the 3rd step, a wavelet transform is used to develop a feature vector containing 3-dimensional information on various types of defects. In the final step, all the feature vectors are classified through a backpropagation-based ANN algorithm. The obtained results show that the proposed algorithms are highly reliable and also precise for NDT monitoring.

  20. Development and application of a novel genome-wide SNP array reveals domestication history in soybean.

    Science.gov (United States)

    Wang, Jiao; Chu, Shanshan; Zhang, Huairen; Zhu, Ying; Cheng, Hao; Yu, Deyue

    2016-02-09

    Domestication of soybeans occurred under the intense human-directed selections aimed at developing high-yielding lines. Tracing the domestication history and identifying the genes underlying soybean domestication require further exploration. Here, we developed a high-throughput NJAU 355 K SoySNP array and used this array to study the genetic variation patterns in 367 soybean accessions, including 105 wild soybeans and 262 cultivated soybeans. The population genetic analysis suggests that cultivated soybeans have tended to originate from northern and central China, from where they spread to other regions, accompanied with a gradual increase in seed weight. Genome-wide scanning for evidence of artificial selection revealed signs of selective sweeps involving genes controlling domestication-related agronomic traits including seed weight. To further identify genomic regions related to seed weight, a genome-wide association study (GWAS) was conducted across multiple environments in wild and cultivated soybeans. As a result, a strong linkage disequilibrium region on chromosome 20 was found to be significantly correlated with seed weight in cultivated soybeans. Collectively, these findings should provide an important basis for genomic-enabled breeding and advance the study of functional genomics in soybean.

  1. Matched field noise suppression: Principle with application to towed hydrophone line array

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Discrete noise source suppression in underwater acoustic channel has attracted great attention in recent years. The paper proposes a new principle for dealing with the problem. This new principle is called matched field noise suppression (MFNS). Based on a previous work of the authors group, a full understanding about how a discrete noise source shows effects on the performance of a towed hydrophone line array has been obtained. In light of that finding, MFNS is proposed, which explores and utilizes the characteristics of the noise transmission channel to achieve much greater suppression of the noise in comparison with existing approaches. MFNS combines the concept of matched field processing (MFP) and optimal sensor array processing (OSAP) together to suppress the discrete noise source and to maintain an optimal beam for receiving far-field wanted plane wave signals. A MFNS beam-former is deduced in constraint with signal plane-wave response being unit and noise matched field response being zero. A closed-form solution of the weight vector for the beam-former is given. Computer simulation results agree well to the theoretical analysis.

  2. Investigation of the Optical and Sensing Characteristics of Nanoparticle Arrays for High Temperature Applications

    Science.gov (United States)

    Dharmalingam, Gnanaprakash

    realized through control of the shape and geometry of the catalytically active Au nanoparticles. While this is not possible through the layer by layer sputter deposition approach, this level of control has been realized through the use of electron beam lithography to fabricate nanocomposite arrays. Sensing results towards the detection of H2 will be highlighted with specific concerns related to optimization of these nanorod arrays detailed. The proposed work will discuss the various parameters for optimization of these arrays, which would enable them to be used as reliable, sensitive and selective harsh environmental sensors.

  3. The Development of Low Threshold Laser Arrays and Their Applications in Parallel Optical Datalinks

    Science.gov (United States)

    Zhao, Hanmin

    We present the analytical and experimental study for the development of ultra-low threshold InGaAs/GaAs/AlGaAs quantum well semiconductor lasers and laser arrays grown on non planar substrates by MOCVD. This study has resulted in the demonstration of some of the lowest threshold currents and current densities yet reported as well as the demonstration of multichannel optical datalinks working at 1Gbit/sec/channel. The gain properties of the InGaAs/GaAs strained quantum wells and the lasing properties of InGaAs/GaAs lasers were theoretically analysed. Using MOCVD growth technique, the growth condition for InGaAs/GaAs quantum wells and InGaAs/GaAs broad area lasers were optimized. InGaAs/GaAs broad area laser threshold current density as low as 56 A/cm^{-2} were obtained. The growth and doping properties of InGaAs/GaAs quantum wells and AlGaAs bulk layer on non planar substrates were studied and the unique properties we learned from the above study were used to design and fabricate a new buried heterostructure InGaAs/GaAs laser for low threshold and high efficiency operation. Record low threshold current of 0.5 mA and 0.6 mA were obtained for as cleaved DQW lasers and SQW lasers respectively. HR coated SQW laser threshold currents as low as 0.15 mA were obtained which is the lowest reported threshold current in a diode laser. This new technique produces high yield and high laser uniformity because of the simple growth and processing procedures involved. Highly uniform InGaAs/GaAs SQW and DQW laser arrays with sub-milliampere threshold currents were obtained. Using the above low threshold lasers, a unique three terminal laser structure that is suitable for high speed, high efficiency, large signal, digital modulation was investigated. Three terminal laser arrays were used in a wide bandwidth parallel optical datalink system. High data transfer rate (1GBit/sec/channel) and low bit error rate (BER) ({phase margin were obtained. This parallel optical datalink system can

  4. Nanotube Arrays in Porous Anodic Alumina Membranes

    Institute of Scientific and Technical Information of China (English)

    Liang LI; Naoto KOSHIZAKI; Guanghai LI

    2008-01-01

    This review summarizes the various techniques developed for fabricating nanotube arrays in porous anodic alumina membranes (AAMs). After a brief introduction to the fabrication process of AAMs, taking carbons, metals, semiconductors, organics, biomoleculars, and heterojunctions as typical examples, attention will be focused on the recently established methods to fabricate nanotubes in AAM, including electrochemical deposition, surface sol-gel, modified chemical vapor deposition, atomic layer deposition, and layer-by-layer growth. Every method is demonstrated by one or two reported results. Finally, this review is concluded with some perspectives on the research directions and focuses on the AAM-based nanotubes fields.

  5. An electronic-nose sensor node based on a polymer-coated surface acoustic wave array for wireless sensor network applications.

    Science.gov (United States)

    Tang, Kea-Tiong; Li, Cheng-Han; Chiu, Shih-Wen

    2011-01-01

    This study developed an electronic-nose sensor node based on a polymer-coated surface acoustic wave (SAW) sensor array. The sensor node comprised an SAW sensor array, a frequency readout circuit, and an Octopus II wireless module. The sensor array was fabricated on a large K(2) 128° YX LiNbO3 sensing substrate. On the surface of this substrate, an interdigital transducer (IDT) was produced with a Cr/Au film as its metallic structure. A mixed-mode frequency readout application specific integrated circuit (ASIC) was fabricated using a TSMC 0.18 μm process. The ASIC output was connected to a wireless module to transmit sensor data to a base station for data storage and analysis. This sensor node is applicable for wireless sensor network (WSN) applications.

  6. An Electronic-Nose Sensor Node Based on a Polymer-Coated Surface Acoustic Wave Array for Wireless Sensor Network Applications

    Directory of Open Access Journals (Sweden)

    Kea-Tiong Tang

    2011-04-01

    Full Text Available This study developed an electronic-nose sensor node based on a polymer-coated surface acoustic wave (SAW sensor array. The sensor node comprised an SAW sensor array, a frequency readout circuit, and an Octopus II wireless module. The sensor array was fabricated on a large K2 128° YX LiNbO3 sensing substrate. On the surface of this substrate, an interdigital transducer (IDT was produced with a Cr/Au film as its metallic structure. A mixed-mode frequency readout application specific integrated circuit (ASIC was fabricated using a TSMC 0.18 μm process. The ASIC output was connected to a wireless module to transmit sensor data to a base station for data storage and analysis. This sensor node is applicable for wireless sensor network (WSN applications.

  7. Current Approach in Surface Plasmons for Thin Film and Wire Array Solar Cell Applications

    Directory of Open Access Journals (Sweden)

    Keya Zhou

    2015-07-01

    Full Text Available Surface plasmons, which exist along the interface of a metal and a dielectric, have been proposed as an efficient alternative method for light trapping in solar cells during the past ten years. With unique properties such as superior light scattering, optical trapping, guide mode coupling, near field concentration, and hot-electron generation, metallic nanoparticles or nanostructures can be tailored to a certain geometric design to enhance solar cell conversion efficiency and to reduce the material costs. In this article, we review current approaches on different kinds of solar cells, such as crystalline silicon (c-Si and amorphous silicon (a-Si thin film solar cells, organic solar cells, nanowire array solar cells, and single nanowire solar cells.

  8. Application of multiparameter coincidence spectrometry using a Ge detectors array to neutron activation analysis

    CERN Document Server

    Hatsukawa, Y; Hayakawa, T; Toh, Y; Shinohara, N

    2002-01-01

    The method of multiparameter coincidence spectrometry based on gamma-gamma coincidence is widely used for the nuclear structure studies, because of its high sensitivity to gamma-rays. In this study, feasibility of the method of multiparameter coincidence spectrometry for analytical chemistry was examined. Two reference igneous rock samples (JP-1, JB-1a) issued by the Geological Survey of Japan were irradiated at a research reactor, and the gamma-rays from the radioisotopes produced via neutron capture reactions were measured using an array of 12 Ge detectors with BGO Compton suppressors, GEMINI. Simultaneously 24 elements were analyzed without chemical separation. The observed smallest component was Eu contained in JP-1 with abundance of 4 ppb.

  9. High Integrated Microwave Architecture Using LTCC-SIP Technology in Active Phased Array Antenna Applications

    Science.gov (United States)

    Zhou, Jun; Shi, Wei; Dou, Wen-Bin; Shen, Ya

    2012-06-01

    A kind of three dimensional Low Temperature Co-fired Ceramic (LTCC)-System in Package (SIP) transition was proposed in this paper. The basic design of SIP with LTCC technology was done by vertical transitions which transmit the microwave signal from the bottom to the surface of the substrate. The measured insertion loss did not exceed 1.5 dB, which contains the insertion loss of the test board about 0.6 dB at 18 GHz and the return loss was better than-15 dB up to 18 GHz. Then this technology was applied to a kind of phase shifting and amplifier module with two output ports. Basing on this module, a miniature Ku-band active phase array antenna was realized. The design results in a small size(84.8 mm×84.8 mm×55 mm). The measured performance of systems radiation pattern was also given.

  10. Optical characterization of nonimaging dish concentrator for the application of dense-array concentrator photovoltaic system.

    Science.gov (United States)

    Tan, Ming-Hui; Chong, Kok-Keong; Wong, Chee-Woon

    2014-01-20

    Optimization of the design of a nonimaging dish concentrator (NIDC) for a dense-array concentrator photovoltaic system is presented. A new algorithm has been developed to determine configuration of facet mirrors in a NIDC. Analytical formulas were derived to analyze the optical performance of a NIDC and then compared with a simulated result obtained from a numerical method. Comprehensive analysis of optical performance via analytical method has been carried out based on facet dimension and focal distance of the concentrator with a total reflective area of 120 m2. The result shows that a facet dimension of 49.8 cm, focal distance of 8 m, and solar concentration ratio of 411.8 suns is the most optimized design for the lowest cost-per-output power, which is US$1.93 per watt.

  11. Development of Ultra-Low Power Metal Oxide Sensors and Arrays for Embedded Applications

    Science.gov (United States)

    Lutz, Brent; Wind, Rikard; Kostelecky, Clayton; Routkevitch, Dmitri; Deininger, Debra

    2011-09-01

    Metal oxide semiconductor sensors are widely used as individual sensors and in arrays, and a variety of designs for low power microhotplates have been demonstrated.1 Synkera Technologies has developed an embeddable chemical microsensor platform, based on a unique ceramic MEMS technology, for practical implementation in cell phones and other mobile electronic devices. Key features of this microsensor platform are (1) small size, (2) ultra-low power consumption, (3) high chemical sensitivity, (4) accurate response to a wide-range of threats, and (5) low cost. The sensor platform is enabled by a combination of advances in ceramic micromachining, and precision deposition of sensing films inside the high aspect ratio pores of anodic aluminum oxide (AAO).

  12. Enhanced extraordinary optical transmission (EOT) through arrays of bridged nanohole pairs and their sensing applications

    KAUST Repository

    Yue, Weisheng

    2014-01-01

    Extraordinary optical transmission (EOT) through arrays of gold nanoholes was studied with light across the visible to the near-infrared spectrum. The EOT effect was found to be improved by bridging pairs of nanoholes due to the concentration of the electromagnetic field in the slit between the holes. The geometrical shape and separation of the holes in these pairs of nanoholes affected the intensity of the transmission and the wavelength of resonance. Changing the geometrical shapes of these nanohole pairs from triangles to circles to squares leads to increased transmission intensity as well as red-shifting resonance wavelengths. The performance of bridged nanohole pairs as a plasmonic sensor was investigated. The bridged nanohole pairs were able to distinguish methanol, olive oil and microscope immersion oil for the different surface plasmon resonance in transmission spectra. Numerical simulation results were in agreement with experimental observations. © 2014 the Partner Organisations.

  13. Scalable stacked array piezoelectric deformable mirror for astronomy and laser processing applications.

    Science.gov (United States)

    Wlodarczyk, Krystian L; Bryce, Emma; Schwartz, Noah; Strachan, Mel; Hutson, David; Maier, Robert R J; Atkinson, David; Beard, Steven; Baillie, Tom; Parr-Burman, Phil; Kirk, Katherine; Hand, Duncan P

    2014-02-01

    A prototype of a scalable and potentially low-cost stacked array piezoelectric deformable mirror (SA-PDM) with 35 active elements is presented in this paper. This prototype is characterized by a 2 μm maximum actuator stroke, a 1.4 μm mirror sag (measured for a 14 mm × 14 mm area of the unpowered SA-PDM), and a ±200 nm hysteresis error. The initial proof of concept experiments described here show that this mirror can be successfully used for shaping a high power laser beam in order to improve laser machining performance. Various beam shapes have been obtained with the SA-PDM and examples of laser machining with the shaped beams are presented.

  14. Titania nanotube arrays surface-modified with ZnO for enhanced photocatalytic applications

    Energy Technology Data Exchange (ETDEWEB)

    Nageri, Manoj; Kalarivalappil, Vijila; Vijayan, Baiju K.; Kumar, Viswanathan, E-mail: vkumar10@yahoo.co.in

    2016-05-15

    Highlights: • Heterostructures of TNA/ZnO synthesised through potentiostatic anodisation followed by hydrothermal method. • Evaluation of morphological features of the heterostructure with hydrothermal processing time. • Correlation of photocatalytic activity of the hetrostructure with its morphology and surface texture. - Abstract: Well ordered titanium dioxide nanotube arrays (TNA) of average diameter 129 nm and wall thickness of 25 nm were fabricated through potentiostatic anodisation of titanium (Ti) metal substrates. Such TNA were subsequently surface-modified with various amounts of zinc oxide (ZnO) nanopowders using hydrothermal technique to obtain heterogeneous TNA/ZnO nanostructures. The crystalline phase and surface microstructure of the heterostructures were determined by X-ray diffraction, Raman spectroscopy and scanning electron microscopy respectively. The morphology of the heterostructures strongly depended on the hydrothermal conditions employed. The photocatalytic activity of the heterostructures have also been investigated and correlated with their surface morphology and texture.

  15. Application of high resolution SNP arrays in patients with congenital oral clefts in south China

    Indian Academy of Sciences (India)

    TING-YING LEI; HONG-TAO WANG; FAN LI; YING-QIU CUI; FANG FU; RU LI; CAN LIAO

    2016-12-01

    Chromosome microarray analysis (CMA) has proven to be a powerful tool in postnatal patients with intellectual disabilities. However, the diagnostic capability of CMA in patients with congenital oral clefts remain mysterious. Here, we present ourclinical experience in implementing whole-genome high-resolution SNP arrays to investigate 33 patients with syndromic and nonsyndromic oral clefts in whom standard karyotyping analyses showed normal karyotypes. We aim to identify the genomic aetiology and candidate genes in patients with congenital oral clefts. CMA revealed copy number variants (CNVs) in every patient, which ranged from 2 to 9 per sample. The size of detected CNVs varied from 100 to 3.2 Mb. In 33 patients, we identified six clinically significant CNVs. The incidence of clinically significant CNVs was 18.2% (6/33). Three of these six CNVs were detected in patients with nonsyndromic clefts, including one who presented with isolated cleft lip with cleft palate (CLP) and two with cleft palate only (CPO). The remaining three CNVs were detected in patients with syndromic clefts. However, no CNV was detected in patients with cleft lip only (CLO). The six clinically significant CNVs were as follows: 8p23.1 microduplication (198 kb); 10q22.2-q22.3 microdeletion (1766 kb); 18q12.3 microduplication (638 kb); 20p12.1 microdeletion (184 kb); 6q26 microdeletion (389 kb); and 22q11.21-q11.23 microdeletion (3163 kb). In addition, two novel candidate genes for oral clefts, KAT6B and MACROD2, were putatively identified. We also found a CNV of unknown clinical significance witha detection rate of 3.0% (1/33). Our results further support the notion that CNVs significantly contributed to the genetic aetiology of oral clefts and emphasize the efficacy of whole-genome high-resolution SNP arrays to detect novel candidate genes in patients with syndromic and nonsyndromic clefts.

  16. A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species.

    Science.gov (United States)

    Geraldes, A; Difazio, S P; Slavov, G T; Ranjan, P; Muchero, W; Hannemann, J; Gunter, L E; Wymore, A M; Grassa, C J; Farzaneh, N; Porth, I; McKown, A D; Skyba, O; Li, E; Fujita, M; Klápště, J; Martin, J; Schackwitz, W; Pennacchio, C; Rokhsar, D; Friedmann, M C; Wasteneys, G O; Guy, R D; El-Kassaby, Y A; Mansfield, S D; Cronk, Q C B; Ehlting, J; Douglas, C J; Tuskan, G A

    2013-03-01

    Genetic mapping of quantitative traits requires genotypic data for large numbers of markers in many individuals. For such studies, the use of large single nucleotide polymorphism (SNP) genotyping arrays still offers the most cost-effective solution. Herein we report on the design and performance of a SNP genotyping array for Populus trichocarpa (black cottonwood). This genotyping array was designed with SNPs pre-ascertained in 34 wild accessions covering most of the species latitudinal range. We adopted a candidate gene approach to the array design that resulted in the selection of 34 131 SNPs, the majority of which are located in, or within 2 kb of, 3543 candidate genes. A subset of the SNPs on the array (539) was selected based on patterns of variation among the SNP discovery accessions. We show that more than 95% of the loci produce high quality genotypes and that the genotyping error rate for these is likely below 2%. We demonstrate that even among small numbers of samples (n = 10) from local populations over 84% of loci are polymorphic. We also tested the applicability of the array to other species in the genus and found that the number of polymorphic loci decreases rapidly with genetic distance, with the largest numbers detected in other species in section Tacamahaca. Finally, we provide evidence for the utility of the array to address evolutionary questions such as intraspecific studies of genetic differentiation, species assignment and the detection of natural hybrids.

  17. State-of-the-art imaging arrays and their applications; Proceedings of the Meeting, San Diego, CA, August 21-23, 1984

    Science.gov (United States)

    Prettyjohns, K. N.

    1984-01-01

    Visible and X-ray imaging arrays are considered, taking into account the future scientific CCD, high sensitivity charge-coupled device (CCD) imagers for television, an analysis of the vertical charge transfer efficiency of a 'line transfer' color image sensor, techniques for operating CCDs in very high speed framing mode, a wide dynamic range CCD camera, recent innovations in CID (Charge Injection Device) cameras, and the design and development of a 1024x1024 visible imager. Other topics explored are related to infrared imaging arrays, techniques for array testing and characterization, new applications and instruments, and imaging arrays in astronomy. Attention is given to the advent of three-dimensional imaging array architectures, a television compatible portable IR-CCD camera system, a method for measuring the modulation transfer function of CCDs using laser speckle, an expedient approach to focal plane testing, a CCD-based parallel analog processor, integrated detector array technology for infrared astronomy, and a star mapper using a linear CCD array.

  18. Estimation and application of 2-D scattering matrices for sparse array imaging of simulated damage in composite panels

    Science.gov (United States)

    Williams, Westin B.; Michaels, Thomas E.; Michaels, Jennifer E.

    2017-02-01

    Reliable detection of damage in composites is critically important for failure prevention in the aerospace industry since these materials are more frequently being used in high stress applications. Structural health monitoring (SHM) via guided wave sensors mounted on or embedded within a composite structure can help detect and localize damage in real-time while potentially reducing overall maintenance costs. One approach to guided wave SHM is sparse array imaging via the minimum variance algorithm, and it has been shown in prior work that incorporating expected scattering from defects of interest can improve the quality of damage localization and characterization. For this study, simulated damage in the form of attached magnets was used for estimating scattering from recorded wavefield data. Data were recorded on a circle centered at the damage location from multiple incident directions before and after the magnets were attached. Baseline subtraction is used to estimate scattering patterns for each incident direction, and these patterns are combined and interpolated to form a full 2-D scattering matrix. This matrix is then incorporated into the minimum variance imaging algorithm, and the efficacy of this scattering estimation methodology is evaluated by comparing the resulting sparse array images to those generated using simpler scattering assumptions.

  19. Development of a SNP array and its application to genetic mapping and diversity assessment in pepper (Capsicum spp.)

    Science.gov (United States)

    Cheng, Jiaowen; Qin, Cheng; Tang, Xin; Zhou, Huangkai; Hu, Yafei; Zhao, Zicheng; Cui, Junjie; Li, Bo; Wu, Zhiming; Yu, Jiping; Hu, Kailin

    2016-01-01

    The development and application of single nucleotide polymorphisms (SNPs) is in its infancy for pepper. Here, a set of 15,000 SNPs were chosen from the resequencing data to develop an array for pepper with 12,720 loci being ultimately synthesized. Of these, 8,199 (~64.46%) SNPs were found to be scorable and covered ~81.18% of the whole genome. With this array, a high-density interspecific genetic map with 5,569 SNPs was constructed using 297 F2 individuals, and genetic diversity of a panel of 399 pepper elite/landrace lines was successfully characterized. Based on the genetic map, one major QTL, named Up12.1, was detected for the fruit orientation trait. A total of 65 protein-coding genes were predicted within this QTL region based on the current annotation of the Zunla-1 genome. In summary, the thousands of well-validated SNP markers, high-density genetic map and genetic diversity information will be useful for molecular genetics and innovative breeding in pepper. Furthermore, the mapping results lay foundation for isolating the genes underlying variation in fruit orientation of Capsicum. PMID:27623541

  20. Pushing back the frontiers of mercury speciation using a combination of biomolecular and isotopic signatures: challenge and perspectives.

    Science.gov (United States)

    Pedrero, Zoyne; Donard, Olivier F X; Amouroux, David

    2016-04-01

    Mercury (Hg) pollution is considered a major environmental problem due to the extreme toxicity of Hg. However, Hg metabolic pathways in biota remain elusive. An understanding of these pathways is crucial to elucidating the (eco)toxic effects of Hg and its biogeochemical cycle. The development of a new analytical methodology based on both speciation and natural isotopic fractionation represents a promising approach for metabolic studies of Hg and other metal(loid)s. Speciation provides valuable information about the reactivity and potential toxicity of metabolites, while the use of natural isotopic signature analysis adds a complementary dynamic dimension that allows the life history of the target element to be probed, the source of the target element (i.e., the source of pollution) to be identified, and reactions to be tracked. The resulting combined (bio)molecular and isotopic signature affords precious insight into the behavior of Hg in biota and Hg detoxification mechanisms. In the long term, this highly innovative methodology could be used in life and environmental science studies of metal(loid)s to push back the frontiers of our knowledge in this field. This paper summarizes the current status of the application of Hg speciation and the isotopic signature of Hg at the biomolecular level in living organisms, and discusses potential future uses of this combination of techniques.

  1. Differential geometry-based solvation and electrolyte transport models for biomolecular modeling: a review

    OpenAIRE

    Wei, Guo Wei; Baker, Nathan A.

    2014-01-01

    This chapter reviews the differential geometry-based solvation and electrolyte transport for biomolecular solvation that have been developed over the past decade. A key component of these methods is the differential geometry of surfaces theory, as applied to the solvent-solute boundary. In these approaches, the solvent-solute boundary is determined by a variational principle that determines the major physical observables of interest, for example, biomolecular surface area, enclosed volume, el...

  2. Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations.

    Science.gov (United States)

    Takada, Shoji; Kanada, Ryo; Tan, Cheng; Terakawa, Tsuyoshi; Li, Wenfei; Kenzaki, Hiroo

    2015-12-15

    Due to hierarchic nature of biomolecular systems, their computational modeling calls for multiscale approaches, in which coarse-grained (CG) simulations are used to address long-time dynamics of large systems. Here, we review recent developments and applications of CG modeling methods, focusing on our methods primarily for proteins, DNA, and their complexes. These methods have been implemented in the CG biomolecular simulator, CafeMol. Our CG model has resolution such that ∼10 non-hydrogen atoms are grouped into one CG particle on average. For proteins, each amino acid is represented by one CG particle. For DNA, one nucleotide is simplified by three CG particles, representing sugar, phosphate, and base. The protein modeling is based on the idea that proteins have a globally funnel-like energy landscape, which is encoded in the structure-based potential energy function. We first describe two representative minimal models of proteins, called the elastic network model and the classic Go̅ model. We then present a more elaborate protein model, which extends the minimal model to incorporate sequence and context dependent local flexibility and nonlocal contacts. For DNA, we describe a model developed by de Pablo's group that was tuned to well reproduce sequence-dependent structural and thermodynamic experimental data for single- and double-stranded DNAs. Protein-DNA interactions are modeled either by the structure-based term for specific cases or by electrostatic and excluded volume terms for nonspecific cases. We also discuss the time scale mapping in CG molecular dynamics simulations. While the apparent single time step of our CGMD is about 10 times larger than that in the fully atomistic molecular dynamics for small-scale dynamics, large-scale motions can be further accelerated by two-orders of magnitude with the use of CG model and a low friction constant in Langevin dynamics. Next, we present four examples of applications. First, the classic Go̅ model was used to

  3. Solar array deployment mechanism

    Science.gov (United States)

    Calassa, Mark C.; Kackley, Russell

    1995-05-01

    This paper describes a Solar Array Deployment Mechanism (SADM) used to deploy a rigid solar array panel on a commercial spacecraft. The application required a deployment mechanism design that was not only lightweight, but also could be produced and installed at the lowest possible cost. This paper covers design, test, and analysis of a mechanism that meets these requirements.

  4. Fabrication of Ni-Ti-O nanotube arrays by anodization of NiTi alloy and their potential applications

    Science.gov (United States)

    Hang, Ruiqiang; Liu, Yanlian; Zhao, Lingzhou; Gao, Ang; Bai, Long; Huang, Xiaobo; Zhang, Xiangyu; Tang, Bin; Chu, Paul K.

    2014-01-01

    Nickel-titanium-oxide (Ni-Ti-O) nanotube arrays (NTAs) prepared on nearly equiatomic NiTi alloy shall have broad application potential such as for energy storage and biomedicine, but their precise structure control is a great challenge because of the high content of alloying element of Ni, a non-valve metal that cannot form a compact electronic insulating passive layer when anodized. In the present work, we systemically investigated the influence of various anodization parameters on the formation and structure of Ni-Ti-O NTAs and their potential applications. Our results show that well controlled NTAs can be fabricated during relatively wide ranges of the anodization voltage (5–90 V), electrolyte temperature (10–50°C) and electrolyte NH4F content (0.025–0.8 wt%) but within a narrow window of the electrolyte H2O content (0.0–1.0 vol%). Through modulating these parameters, the Ni-Ti-O NTAs with different diameter (15–70 nm) and length (45–1320 nm) can be produced in a controlled manner. Regarding potential applications, the Ni-Ti-O NTAs may be used as electrodes for electrochemical energy storage and non-enzymic glucose detection, and may constitute nanoscaled biofunctional coating to improve the biological performance of NiTi based biomedical implants. PMID:25520180

  5. Fabrication of Ni-Ti-O nanotube arrays by anodization of NiTi alloy and their potential applications

    Science.gov (United States)

    Hang, Ruiqiang; Liu, Yanlian; Zhao, Lingzhou; Gao, Ang; Bai, Long; Huang, Xiaobo; Zhang, Xiangyu; Tang, Bin; Chu, Paul K.

    2014-12-01

    Nickel-titanium-oxide (Ni-Ti-O) nanotube arrays (NTAs) prepared on nearly equiatomic NiTi alloy shall have broad application potential such as for energy storage and biomedicine, but their precise structure control is a great challenge because of the high content of alloying element of Ni, a non-valve metal that cannot form a compact electronic insulating passive layer when anodized. In the present work, we systemically investigated the influence of various anodization parameters on the formation and structure of Ni-Ti-O NTAs and their potential applications. Our results show that well controlled NTAs can be fabricated during relatively wide ranges of the anodization voltage (5-90 V), electrolyte temperature (10-50°C) and electrolyte NH4F content (0.025-0.8 wt%) but within a narrow window of the electrolyte H2O content (0.0-1.0 vol%). Through modulating these parameters, the Ni-Ti-O NTAs with different diameter (15-70 nm) and length (45-1320 nm) can be produced in a controlled manner. Regarding potential applications, the Ni-Ti-O NTAs may be used as electrodes for electrochemical energy storage and non-enzymic glucose detection, and may constitute nanoscaled biofunctional coating to improve the biological performance of NiTi based biomedical implants.

  6. A Partially Magnetized Ferrite LTCC-Based SIW Phase Shifter for Phased Array Applications

    KAUST Repository

    Ghaffar, Farhan A.

    2015-06-01

    The theory and design of a half-mode substrate-integrated waveguide ferrite low-temperature cofired ceramic-based phase shifter are presented in this paper. Unlike typical ferrite-based designs, the biasing is done through embedded windings in a multi-layer substrate that not only obviates the requirement of bulky electromagnets, but also prevents loss of bias fields at the air-to-ferrite interface. The phase shifter is operated in the partially magnetized state of ferrite substrate. Through the combined effect of embedded windings, half-mode waveguide operation, and partially magnetized state, the required bias fields have been reduced by 90% as compared with conventional ferrite-based designs employing electromagnets. A complete analytical model, backed up by electromagnetic simulations and measured results from a prototype, is presented in this paper. The fabricated prototype demonstrates a phase shift of 83.2° at a center frequency of 13.1 GHz and a figure of merit of 83.2°/dB. As a proof-of-concept, the proposed phase shifter design is monolithically integrated with a two-element antenna array to demonstrate a measured beam steering of 30°. The phase shifter design is highly efficient in terms of required bias fields, and it has a small form factor and can be easily integrated with other electronic components and systems. © 1965-2012 IEEE.

  7. Strategies in the preparation of DNA oligonucleotide arrays for diagnostic applications.

    Science.gov (United States)

    Beaucage, S L

    2001-08-01

    This report emphasizes the interfacial chemistry that is required to ensure proper attachment of oligonucleotides onto the surface of microarrays. For example, strategies for the covalent attachment of pre-synthesized oligonucleotides to glass slides, gold films, polyacrylamide gel pads, polypyrrole films, and optical fibers are surveyed in an attempt to better define the parameters for optimal formation and detection of DNA hybrids. These parameters include among others, the nature and length of the linkers attaching oligonucleotides to the arrays, and the surface density of oligonucleotides required for unhindered hybridization with DNA targets. Sensitive detection methods such as the use of light-scattering techniques, molecular beacons, surface plasmon resonance, attenuated total internal reflection-FTIR, and the evanescent field excitation of fluorescence from surface-bound fluorophores have been developed to study the kinetics and specificity of hybridization events. Finally, the synthesis of oligonucleotides directly on glass surfaces and polypropylene sheets has been investigated to enable DNA sequencing by hybridization and achieve oligonucleotide densities of ca. 10(6) sequences per cm(2) on DNA chips.

  8. New Shortwave Array Spectroradiometer-Hemispheric (SAS-He): Hyperspectral Design and Initial Applications

    Energy Technology Data Exchange (ETDEWEB)

    Kassianov, Evgueni I.; Flynn, Connor J M.; Barnard, James C.; Ermold, Brian D.; Berg, Larry K.

    2016-10-31

    Aerosol optical depth (AOD) derived from hyperspectral measurements can serve as an invaluable input for simultaneous retrievals of particle size distributions and major trace gases. The required hyperspectral measurements are provided by a new ground-based radiometer, the so-called Shortwave Array Spectroradiometer-Hemispheric (SAS-He), recently developed with support from the Department of Energy (DOE) Office Atmospheric Radiation Measurement (ARM) Program. The SAS-He has wide spectral coverage (350-1700nm) and high spectral resolution: about 2.4 nm and 6 nm within 350-1000 nm and 970-1700 nm spectral ranges, respectively. To illustrate an initial performance of the SAS-He, we take advantage of integrated dataset collected during the ARM-supported Two-Column Aerosol Project (TCAP) over the US coastal region (Cape Cod, Massachusetts). This dataset includes AODs derived using data from Aerosol Robotic Network (AERONET) sunphotometer and Multi-Filter Rotating Shadowband Radiometer (MFRSR). We demonstrate that, on average, the SAS-He AODs closely match the MFRSR and AERONET AODs in the ultraviolet and visible spectral ranges for this area with highly variable AOD. Also, we discuss corrections of SAS-He total optical depth for gas absorption in the near-infrared spectral range and their operational implementation.

  9. Bilayer–metal assisted chemical etching of silicon microwire arrays for photovoltaic applications

    Directory of Open Access Journals (Sweden)

    R. W. Wu

    2016-02-01

    Full Text Available Silicon microwires with lateral dimension from 5 μm to 20 μm and depth as long as 20 μm are prepared by bilayer metal assisted chemical etching (MaCE. A bilayer metal configuration (Metal 1 / Metal 2 was applied to assist etching of Si where metal 1 acts as direct catalyst and metal 2 provides mechanical support. Different metal types were investigated to figure out the influence of metal catalyst on morphology of etched silicon. We find that silicon microwires with vertical side wall are produced when we use Ag/Au bilayer, while cone–like and porous microwires formed when Pt/Au is applied. The different micro-/nano-structures in as-etched silicon are demonstrated to be due to the discrepancy of work function of metal catalyst relative to Si. Further, we constructed a silicon microwire arrays solar cells in a radial p–n junction configurations in a screen printed aluminum paste p–doping process.

  10. Miniaturizable Ion-Selective Arrays Based on Highly Stable Polymer Membranes for Biomedical Applications

    Directory of Open Access Journals (Sweden)

    Mònica Mir

    2014-07-01

    Full Text Available Poly(vinylchloride (PVC is the most common polymer matrix used in the fabrication of ion-selective electrodes (ISEs. However, the surfaces of PVC-based sensors have been reported to show membrane instability. In an attempt to overcome this limitation, here we developed two alternative methods for the preparation of highly stable and robust ion-selective sensors. These platforms are based on the selective electropolymerization of poly(3,4-ethylenedioxythiophene (PEDOT, where the sulfur atoms contained in the polymer covalently interact with the gold electrode, also permitting controlled selective attachment on a miniaturized electrode in an array format. This platform sensor was improved with the crosslinking of the membrane compounds with poly(ethyleneglycol diglycidyl ether (PEG, thus also increasing the biocompatibility of the sensor. The resulting ISE membranes showed faster signal stabilization of the sensor response compared with that of the PVC matrix and also better reproducibility and stability, thus making these platforms highly suitable candidates for the manufacture of robust implantable sensors.

  11. Parallel Aligned Mesopore Arrays in Pyramidal-Shaped Gallium Nitride and Their Photocatalytic Applications.

    Science.gov (United States)

    Kim, Hee Jun; Park, Joonmo; Ye, Byeong Uk; Yoo, Chul Jong; Lee, Jong-Lam; Ryu, Sang-Wan; Lee, Heon; Choi, Kyoung Jin; Baik, Jeong Min

    2016-07-20

    Parallel aligned mesopore arrays in pyramidal-shaped GaN are fabricated by using an electrochemical anodic etching technique, followed by inductively coupled plasma etching assisted by SiO2 nanosphere lithography, and used as a promising photoelectrode for solar water oxidation. The parallel alignment of the pores of several tens of micrometers scale in length is achieved by the low applied voltage and prepattern guided anodization. The dry etching of single-layer SiO2 nanosphere-coated GaN produces a pyramidal shape of the GaN, making the pores open at both sides and shortening the escape path of evolved gas bubbles produced inside pores during the water oxidation. The absorption spectra show that the light absorption in the UV range is ∼93% and that there is a red shift in the absorption edge by 30 nm, compared with the flat GaN. It also shows a remarkable enhancement in the photocurrent density by 5.3 times, compared with flat GaN. Further enhancement (∼40%) by the deposition of Ni was observed due to the generation of an electric field, which increases the charge separation ratio.

  12. Parameter allocation of parallel array bistable stochastic resonance and its application in communication systems

    Science.gov (United States)

    Liu, Jian; Wang, You-Guo; Zhai, Qi-Qing; Liu, Jin

    2016-10-01

    In this paper, we propose a parameter allocation scheme in a parallel array bistable stochastic resonance-based communication system (P-BSR-CS) to improve the performance of weak binary pulse amplitude modulated (BPAM) signal transmissions. The optimal parameter allocation policy of the P-BSR-CS is provided to minimize the bit error rate (BER) and maximize the channel capacity (CC) under the adiabatic approximation condition. On this basis, we further derive the best parameter selection theorem in realistic communication scenarios via variable transformation. Specifically, the P-BSR structure design not only brings the robustness of parameter selection optimization, where the optimal parameter pair is not fixed but variable in quite a wide range, but also produces outstanding system performance. Theoretical analysis and simulation results indicate that in the P-BSR-CS the proposed parameter allocation scheme yields considerable performance improvement, particularly in very low signal-to-noise ratio (SNR) environments. Project supported by the National Natural Science Foundation of China (Grant No. 61179027), the Qinglan Project of Jiangsu Province of China (Grant No. QL06212006), and the University Postgraduate Research and Innovation Project of Jiangsu Province (Grant Nos. KYLX15_0829, KYLX15_0831).

  13. Development of high resolution arrayed waveguide grating spectrometers for astronomical applications: first results

    CERN Document Server

    Gatkine, Pradip; Hu, Yiwen; Zhu, Tiecheng; Meng, Yang; Bland-Hawthorn, Joss; Dagenais, Mario

    2016-01-01

    Astrophotonics is the next-generation approach that provides the means to miniaturize near-infrared (NIR) spectrometers for upcoming large telescopes and make them more robust and inexpensive. The target requirements for our spectrograph are: a resolving power of about 3000, wide spectral range (J and H bands), free spectral range of about 30 nm, high on-chip throughput of about 80% (-1dB) and low crosstalk (high contrast ratio) between adjacent on-chip wavelength channels of less than 1% (-20dB). A promising photonic technology to achieve these requirements is Arrayed Waveguide Gratings (AWGs). We have developed our first generation of AWG devices using a silica-on-silicon substrate with a very thin layer of silicon-nitride in the core of our waveguides. The waveguide bending losses are minimized by optimizing the geometry of the waveguides. Our first generation of AWG devices are designed for H band and have a resolving power of around 1500 and free spectral range of about 10 nm around a central wavelength ...

  14. Inferring animal social networks and leadership: applications for passive monitoring arrays.

    Science.gov (United States)

    Jacoby, David M P; Papastamatiou, Yannis P; Freeman, Robin

    2016-11-01

    Analyses of animal social networks have frequently benefited from techniques derived from other disciplines. Recently, machine learning algorithms have been adopted to infer social associations from time-series data gathered using remote, telemetry systems situated at provisioning sites. We adapt and modify existing inference methods to reveal the underlying social structure of wide-ranging marine predators moving through spatial arrays of passive acoustic receivers. From six months of tracking data for grey reef sharks (Carcharhinus amblyrhynchos) at Palmyra atoll in the Pacific Ocean, we demonstrate that some individuals emerge as leaders within the population and that this behavioural coordination is predicted by both sex and the duration of co-occurrences between conspecifics. In doing so, we provide the first evidence of long-term, spatially extensive social processes in wild sharks. To achieve these results, we interrogate simulated and real tracking data with the explicit purpose of drawing attention to the key considerations in the use and interpretation of inference methods and their impact on resultant social structure. We provide a modified translation of the GMMEvents method for R, including new analyses quantifying the directionality and duration of social events with the aim of encouraging the careful use of these methods more widely in less tractable social animal systems but where passive telemetry is already widespread.

  15. Two-Stage Chaos Optimization Search Application in Maximum Power Point Tracking of PV Array

    Directory of Open Access Journals (Sweden)

    Lihua Wang

    2014-01-01

    Full Text Available In order to deliver the maximum available power to the load under the condition of varying solar irradiation and environment temperature, maximum power point tracking (MPPT technologies have been used widely in PV systems. Among all the MPPT schemes, the chaos method is one of the hot topics in recent years. In this paper, a novel two-stage chaos optimization method is presented which can make search faster and more effective. In the process of proposed chaos search, the improved logistic mapping with the better ergodic is used as the first carrier process. After finding the current optimal solution in a certain guarantee, the power function carrier as the secondary carrier process is used to reduce the search space of optimized variables and eventually find the maximum power point. Comparing with the traditional chaos search method, the proposed method can track the change quickly and accurately and also has better optimization results. The proposed method provides a new efficient way to track the maximum power point of PV array.

  16. Miniaturizable Ion-Selective Arrays Based on Highly Stable Polymer Membranes for Biomedical Applications

    Science.gov (United States)

    Mir, Mònica; Lugo, Roberto; Tahirbegi, Islam Bogachan; Samitier, Josep

    2014-01-01

    Poly(vinylchloride) (PVC) is the most common polymer matrix used in the fabrication of ion-selective electrodes (ISEs). However, the surfaces of PVC-based sensors have been reported to show membrane instability. In an attempt to overcome this limitation, here we developed two alternative methods for the preparation of highly stable and robust ion-selective sensors. These platforms are based on the selective electropolymerization of poly(3,4-ethylenedioxythiophene) (PEDOT), where the sulfur atoms contained in the polymer covalently interact with the gold electrode, also permitting controlled selective attachment on a miniaturized electrode in an array format. This platform sensor was improved with the crosslinking of the membrane compounds with poly(ethyleneglycol) diglycidyl ether (PEG), thus also increasing the biocompatibility of the sensor. The resulting ISE membranes showed faster signal stabilization of the sensor response compared with that of the PVC matrix and also better reproducibility and stability, thus making these platforms highly suitable candidates for the manufacture of robust implantable sensors. PMID:24999717

  17. New Shortwave Array Spectroradiometer-Hemispheric (SAS-He): hyperspectral design and initial applications

    Science.gov (United States)

    Kassianov, Evgueni; Flynn, Connor; Barnard, James; Ermold, Brian; Berg, Larry

    2016-10-01

    Aerosol optical depth (AOD) derived from hyperspectral measurements can serve as an invaluable input for simultaneous retrievals of particle size distributions and major trace gases. The required hyperspectral measurements are provided by a new ground-based radiometer, the so-called Shortwave Array Spectroradiometer-Hemispheric (SAS-He), recently developed with support from the Department of Energy (DOE) Office Atmospheric Radiation Measurement (ARM) Program. The SAS-He has wide spectral coverage (350-1700nm) and high spectral resolution: about 2.4 nm and 6 nm within 350-1000 nm and 970-1700 nm spectral ranges, respectively. To illustrate an initial performance of the SAS-He, we take advantage of integrated dataset collected during the ARM-supported Two-Column Aerosol Project (TCAP) over the US coastal region (Cape Cod, Massachusetts). This dataset includes AODs derived using data from Aerosol Robotic Network (AERONET) sunphotometer and Multi-Filter Rotating Shadowband Radiometer (MFRSR). We demonstrate that, on average, the SAS-He AODs closely match the MFRSR and AERONET AODs in the ultraviolet and visible spectral ranges for this area with highly variable AOD. Also, we discuss corrections of SAS-He total optical depth for gas absorption in the near-infrared spectral range and their operational implementation

  18. Digital Radiography Using Digital Detector Arrays Fulfills Critical Applications for Offshore Pipelines

    Directory of Open Access Journals (Sweden)

    Lopes RicardoTadeu

    2010-01-01

    Full Text Available Digital radiography in the inspection of welded pipes to be installed under deep water offshore gas and oil pipelines, like a presalt in Brazil, in the paper has been investigated. The aim is to use digital radiography for nondestructive testing of welds as it is already in use in the medical, aerospace, security, automotive, and petrochemical sectors. Among the current options, the DDA (Digital Detector Array is considered as one of the best solutions to replace industrial films, as well as to increase the sensitivity to reduce the inspection cycle time. This paper shows the results of this new technique, comparing it to radiography with industrial films systems. In this paper, 20 test specimens of longitudinal welded pipe joints, specially prepared with artificial defects like cracks, lack of fusion, lack of penetration, and porosities and slag inclusions with varying dimensions and in 06 different base metal wall thicknesses, were tested and a comparison of the techniques was made. These experiments verified the purposed rules for parameter definitions and selections to control the required digital radiographic image quality as described in the draft international standard ISO/DIS 10893-7. This draft is first standard establishing the parameters for digital radiography on weld seam of welded steel pipes for pressure purposes to be used on gas and oil pipelines.

  19. Nanowire array chips for molecular typing of rare trafficking leukocytes with application to neurodegenerative pathology

    Science.gov (United States)

    Kwak, Minsuk; Kim, Dong-Joo; Lee, Mi-Ri; Wu, Yu; Han, Lin; Lee, Sang-Kwon; Fan, Rong

    2014-05-01

    Despite the presence of the blood-brain barrier (BBB) that restricts the entry of immune cells and mediators into the central nervous system (CNS), a small number of peripheral leukocytes can traverse the BBB and infiltrate into the CNS. The cerebrospinal fluid (CSF) is one of the major routes through which trafficking leukocytes migrate into the CNS. Therefore, the number of leukocytes and their phenotypic compositions in the CSF may represent important sources to investigate immune-to-brain interactions or diagnose and monitor neurodegenerative diseases. Due to the paucity of trafficking leucocytes in the CSF, a technology capable of efficient isolation, enumeration, and molecular typing of these cells in the clinical settings has not been achieved. In this study, we report on a biofunctionalized silicon nanowire array chip for highly efficient capture and multiplexed phenotyping of rare trafficking leukocytes in small quantities (50 microliters) of clinical CSF specimens collected from neurodegenerative disease patients. The antibody coated 3D nanostructured materials exhibited vastly improved rare cell capture efficiency due to high-affinity binding and enhanced cell-substrate interactions. Moreover, our platform creates multiple cell capture interfaces, each of which can selectively isolate specific leukocyte phenotypes. A comparison with the traditional immunophenotyping using flow cytometry demonstrated that our novel silicon nanowire-based rare cell analysis platform can perform rapid detection and simultaneous molecular characterization of heterogeneous immune cells. Multiplexed molecular typing of rare leukocytes in CSF samples collected from Alzheimer's disease patients revealed the elevation of white blood cell counts and significant alterations in the distribution of major leukocyte phenotypes. Our technology represents a practical tool for potentially diagnosing and monitoring the pathogenesis of neurodegenerative diseases by allowing an effective

  20. Nanoscale optofluidic sensor arrays for Dengue virus detection

    Science.gov (United States)

    Mandal, Sudeep; Akhmechet, Roman; Chen, Likun; Nugen, Sam; Baeumner, Antje; Erickson, David

    2007-09-01

    Here we present our work towards the development of Nanoscale Optofluidic Sensor Arrays (NOSA), which is an optofluidic architecture for performing label free, highly parallel, detections of biomolecular interactions. The approach is based on the use of optically resonant devices whose resonant wavelength is shifted due to a local change in refractive index caused by a positive binding event between a surface bound molecule and it solution phase target. A special two stage micro-/nanofluidics architecture is used to first functionalize the devices and then to deliver the targets. Two variants of the NOSA will be presented here. The first approach utilizes a 1D resonant cavity in a 1D silicon-on-insulator (SOI) waveguide with a unique differential size functionalization approach. This approach allows binding events at one or at a combination of the many sensing sites which causes a unique shift in the output resonator spectrum. The latter approach consists of a SOI waveguide evanescently coupled to multiple 1-D photonic crystal resonators of different sizes along the length, each of which is functionalized with a different oligonucleotide probe. These devices have an extremely low limit of detection and are compatible with aqueous environments. The primary advantage of these devices over existing technology is that it combines the sensitivity (limit of detection) of nanosensor technology with the parallelism of the microarray type format. Our initial application is in the detection of viral RNA of Dengue virus.

  1. High linearity SPAD and TDC array for TCSPC and 3D ranging applications

    Science.gov (United States)

    Villa, Federica; Lussana, Rudi; Bronzi, Danilo; Dalla Mora, Alberto; Contini, Davide; Tisa, Simone; Tosi, Alberto; Zappa, Franco

    2015-01-01

    An array of 32x32 Single-Photon Avalanche-Diodes (SPADs) and Time-to-Digital Converters (TDCs) has been fabricated in a 0.35 μm automotive-certified CMOS technology. The overall dimension of the chip is 9x9 mm2. Each pixel is able to detect photons in the 300 nm - 900 nm wavelength range with a fill-factor of 3.14% and either to count them or to time stamp their arrival time. In photon-counting mode an in-pixel 6-bit counter provides photon-numberresolved intensity movies at 100 kfps, whereas in photon-timing mode the 10-bit in-pixel TDC provides time-resolved maps (Time-Correlated Single-Photon Counting measurements) or 3D depth-resolved (through direct time-of-flight technique) images and movies, with 312 ps resolution. The photodetector is a 30 μm diameter SPAD with low Dark Count Rate (120 cps at room temperature, 3% hot-pixels) and 55% peak Photon Detection Efficiency (PDE) at 450 nm. The TDC has a 6-bit counter and a 4-bit fine interpolator, based on a Delay Locked Loop (DLL) line, which makes the TDC insensitive to process, voltage, and temperature drifts. The implemented sliding-scale technique improves linearity, giving 2% LSB DNL and 10% LSB INL. The single-shot precision is 260 ps rms, comprising SPAD, TDC and driving board jitter. Both optical and electrical crosstalk among SPADs and TDCs are negligible. 2D fast movies and 3D reconstructions with centimeter resolution are reported.

  2. The Xsense project: The application of an intelligent sensor array for high sensitivity handheld explosives detectors

    DEFF Research Database (Denmark)

    Kostesha, Natalie; Schmidt, Michael Stenbæk; Bosco, Filippo

    2011-01-01

    Multiple independent sensors are used in security and military applications in order to increase sensitivity, selectivity and data reliability. The Xsense project has been initiated at the Technical University of Denmark in collaboration with a number of partners in an effort to produce a handheld...

  3. Review of thin film solar cell technology and applications for ultra-light spacecraft solar arrays

    Science.gov (United States)

    Landis, Geoffrey A.

    1991-01-01

    Developments in thin-film amorphous and polycrystalline photovoltaic cells are reviewed and discussed with a view to potential applications in space. Two important figures of merit are discussed: efficiency (i.e., what fraction of the incident solar energy is converted to electricity), and specific power (power to weight ratio).

  4. Development and application of a 20K SNP array in potato

    NARCIS (Netherlands)

    Vos, Peter

    2016-01-01

    In this thesis the results are described of investigations of various application of genome wide SNP (single nucleotide polymorphism) markers. The set of SNP markers was identified by GBS (genotyping by sequencing) strategy. The resulting dataset of 129,156 SNPs across 83 tetraploid varieties was us

  5. Performance evaluation of annular arrays in practice: The measurement of phase and amplitude patterns of radio-frequency deep body applicators

    NARCIS (Netherlands)

    Schneider, C.J.; Kuijer, J.P.A.; Colussi, L.C.; Schepp, C.J.; Dijk, J.D.P. van

    1995-01-01

    An approach to a solution of two major problems in operating Annular Phased Arrays in deep body hyperthermia is presented: an E-field sensor capable of measuring phase and amplitude at 70 MHz and the concept of a power transmission factor to determine the effective amplitude of each applicator. In t

  6. [Biobanking and Biomolecular Resources Research Infrastructure (BBMRI). Implications for pathology].

    Science.gov (United States)

    Viertler, C; Zatloukal, K

    2008-11-01

    High quality human biological samples (e.g. blood, tissue or DNA) with associated, well documented clinical and research data are key resources for advancement of life sciences, biotechnology, clinical medicine, drug development and also molecular pathology. Millions of samples of diseased tissues have been collected in the context of routine histopathological diagnosis and are stored in the archives of hospitals and institutes of pathology. A concerted effort is necessary to overcome the current fragmentation of the European biobanking community in order to tap the full research potential of existing biobanks. A pan-European research infrastructure for biobanking and biomolecular resources (BBMRI) is currently in its planning phase. The mission is to link and provide access to local biobanks of different formats, including tissue collections, harmonize standards, establish operational procedures which properly consider ethical, legal, societal aspects, and to secure sustainable funding. Pathology plays a key role in development and administration of tissue banks and is, thus, a major partner for collaboration, expertise and construction of this pan-European research infrastructure.

  7. Biomolecular Evidence of Silk from 8,500 Years Ago.

    Science.gov (United States)

    Gong, Yuxuan; Li, Li; Gong, Decai; Yin, Hao; Zhang, Juzhong

    2016-01-01

    Pottery, bone implements, and stone tools are routinely found at Neolithic sites. However, the integrity of textiles or silk is susceptible to degradation, and it is therefore very difficult for such materials to be preserved for 8,000 years. Although previous studies have provided important evidence of the emergence of weaving skills and tools, such as figuline spinning wheels and osseous lamellas with traces of filament winding, there is a lack of direct evidence proving the existence of silk. In this paper, we explored evidence of prehistoric silk fibroin through the analysis of soil samples collected from three tombs at the Neolithic site of Jiahu. Mass spectrometry was employed and integrated with proteomics to characterize the key peptides of silk fibroin. The direct biomolecular evidence reported here showed the existence of prehistoric silk fibroin, which was found in 8,500-year-old tombs. Rough weaving tools and bone needles were also excavated, indicating the possibility that the Jiahu residents may possess the basic weaving and sewing skills in making textile. This finding may advance the study of the history of silk, and the civilization of the Neolithic Age.

  8. Stochastic Simulation of Biomolecular Networks in Dynamic Environments.

    Directory of Open Access Journals (Sweden)

    Margaritis Voliotis

    2016-06-01

    Full Text Available Simulation of biomolecular networks is now indispensable for studying biological systems, from small reaction networks to large ensembles of cells. Here we present a novel approach for stochastic simulation of networks embedded in the dynamic environment of the cell and its surroundings. We thus sample trajectories of the stochastic process described by the chemical master equation with time-varying propensities. A comparative analysis shows that existing approaches can either fail dramatically, or else can impose impractical computational burdens due to numerical integration of reaction propensities, especially when cell ensembles are studied. Here we introduce the Extrande method which, given a simulated time course of dynamic network inputs, provides a conditionally exact and several orders-of-magnitude faster simulation solution. The new approach makes it feasible to demonstrate-using decision-making by a large population of quorum sensing bacteria-that robustness to fluctuations from upstream signaling places strong constraints on the design of networks determining cell fate. Our approach has the potential to significantly advance both understanding of molecular systems biology and design of synthetic circuits.

  9. Microscale thermophoresis quantifies biomolecular interactions under previously challenging conditions.

    Science.gov (United States)

    Seidel, Susanne A I; Dijkman, Patricia M; Lea, Wendy A; van den Bogaart, Geert; Jerabek-Willemsen, Moran; Lazic, Ana; Joseph, Jeremiah S; Srinivasan, Prakash; Baaske, Philipp; Simeonov, Anton; Katritch, Ilia; Melo, Fernando A; Ladbury, John E; Schreiber, Gideon; Watts, Anthony; Braun, Dieter; Duhr, Stefan

    2013-03-01

    Microscale thermophoresis (MST) allows for quantitative analysis of protein interactions in free solution and with low sample consumption. The technique is based on thermophoresis, the directed motion of molecules in temperature gradients. Thermophoresis is highly sensitive to all types of binding-induced changes of molecular properties, be it in size, charge, hydration shell or conformation. In an all-optical approach, an infrared laser is used for local heating, and molecule mobility in the temperature gradient is analyzed via fluorescence. In standard MST one binding partner is fluorescently labeled. However, MST can also be performed label-free by exploiting intrinsic protein UV-fluorescence. Despite the high molecular weight ratio, the interaction of small molecules and peptides with proteins is readily accessible by MST. Furthermore, MST assays are highly adaptable to fit to the diverse requirements of different biomolecules, such as membrane proteins to be stabilized in solution. The type of buffer and additives can be chosen freely. Measuring is even possible in complex bioliquids like cell lysate allowing close to in vivo conditions without sample purification. Binding modes that are quantifiable via MST include dimerization, cooperativity and competition. Thus, its flexibility in assay design qualifies MST for analysis of biomolecular interactions in complex experimental settings, which we herein demonstrate by addressing typically challenging types of binding events from various fields of life science.

  10. A fast mollified impulse method for biomolecular atomistic simulations

    Science.gov (United States)

    Fath, L.; Hochbruck, M.; Singh, C. V.

    2017-03-01

    Classical integration methods for molecular dynamics are inherently limited due to resonance phenomena occurring at certain time-step sizes. The mollified impulse method can partially avoid this problem by using appropriate filters based on averaging or projection techniques. However, existing filters are computationally expensive and tedious in implementation since they require either analytical Hessians or they need to solve nonlinear systems from constraints. In this work we follow a different approach based on corotation for the construction of a new filter for (flexible) biomolecular simulations. The main advantages of the proposed filter are its excellent stability properties and ease of implementation in standard softwares without Hessians or solving constraint systems. By simulating multiple realistic examples such as peptide, protein, ice equilibrium and ice-ice friction, the new filter is shown to speed up the computations of long-range interactions by approximately 20%. The proposed filtered integrators allow step sizes as large as 10 fs while keeping the energy drift less than 1% on a 50 ps simulation.

  11. Optimizing laser beam profiles using micro-lens arrays for efficient material processing: applications to solar cells

    Science.gov (United States)

    Hauschild, Dirk; Homburg, Oliver; Mitra, Thomas; Ivanenko, Mikhail; Jarczynski, Manfred; Meinschien, Jens; Bayer, Andreas; Lissotschenko, Vitalij

    2009-02-01

    High power laser sources are used in various production tools for microelectronic products and solar cells, including the applications annealing, lithography, edge isolation as well as dicing and patterning. Besides the right choice of the laser source suitable high performance optics for generating the appropriate beam profile and intensity distribution are of high importance for the right processing speed, quality and yield. For industrial applications equally important is an adequate understanding of the physics of the light-matter interaction behind the process. In advance simulations of the tool performance can minimize technical and financial risk as well as lead times for prototyping and introduction into series production. LIMO has developed its own software founded on the Maxwell equations taking into account all important physical aspects of the laser based process: the light source, the beam shaping optical system and the light-matter interaction. Based on this knowledge together with a unique free-form micro-lens array production technology and patented micro-optics beam shaping designs a number of novel solar cell production tool sub-systems have been built. The basic functionalities, design principles and performance results are presented with a special emphasis on resilience, cost reduction and process reliability.

  12. Military Applications of Curved Focal Plane Arrays Developed by the HARDI Program

    Science.gov (United States)

    2011-01-01

    considered one of the main founders of geometrical optics, modern photography, and cinematography . Among his inventions are the Petzval portrait lens... special frequencies, (b) the variation of intensity as a function of special frequency, (c) the image variation of intensity as a result of an...parameters for the HARDI systems to be designed for various applications. To do this, we needed a toolcomputer codeto study the effects of various

  13. HIGH-CURRENT COLD CATHODE FIELD EMISSION ARRAY FOR ELECTRON LENS APPLICATION

    Energy Technology Data Exchange (ETDEWEB)

    Hirshfield, Jay L

    2012-12-28

    During Phase I, the following goals were achieved: (1) design and fabrication of a novel, nano-dimensional CNT field emitter assembly for high current density application, with high durability; (2) fabrication of a ceramic based micro channel plate (MCP) and characterization of its secondary electron emission; and (3) characterizing the CNT/MCP cathode for high field emission and durability. As a result of these achievements, a relatively high current density of ~ 1.2 A/cm2 from a CNT cathode and single channel MCP were measured. The emission current was also extremely stable with a peak-to-peak variation of only 1.8%. The emission current could be further enhanced to meet requirements for electron lens applications by increasing the number of MCP channels. A calculation for maximum possible current density with a 1200 channel/cm2 MCP, placed over a cathode with 1200 uniformly functioning CNTs, would be ~1.46 kA/cm2, neglecting space charge limitations. Clearly this level of emission is far greater than what is needed for the electron lens application, but it does offer a highly comforting margin to account for sub-standard emitters and/or to allow the lesser challenge of building a cathode with fewer channels/cm2. A satisfactory goal for the electron lens application would be a controllable emission of 2-4 mA per channel in an ensemble of 800-1200 uniformly-functioning channels/cm2, and a cathode with overall area of about 1 cm2.

  14. Solving the 0/1 Knapsack Problem by a Biomolecular DNA Computer

    Directory of Open Access Journals (Sweden)

    Hassan Taghipour

    2013-01-01

    Full Text Available Solving some mathematical problems such as NP-complete problems by conventional silicon-based computers is problematic and takes so long time. DNA computing is an alternative method of computing which uses DNA molecules for computing purposes. DNA computers have massive degrees of parallel processing capability. The massive parallel processing characteristic of DNA computers is of particular interest in solving NP-complete and hard combinatorial problems. NP-complete problems such as knapsack problem and other hard combinatorial problems can be easily solved by DNA computers in a very short period of time comparing to conventional silicon-based computers. Sticker-based DNA computing is one of the methods of DNA computing. In this paper, the sticker based DNA computing was used for solving the 0/1 knapsack problem. At first, a biomolecular solution space was constructed by using appropriate DNA memory complexes. Then, by the application of a sticker-based parallel algorithm using biological operations, knapsack problem was resolved in polynomial time.

  15. A Quick-responsive DNA Nanotechnology Device for Bio-molecular Homeostasis Regulation.

    Science.gov (United States)

    Wu, Songlin; Wang, Pei; Xiao, Chen; Li, Zheng; Yang, Bing; Fu, Jieyang; Chen, Jing; Wan, Neng; Ma, Cong; Li, Maoteng; Yang, Xiangliang; Zhan, Yi

    2016-08-10

    Physiological processes such as metabolism, cell apoptosis and immune responses, must be strictly regulated to maintain their homeostasis and achieve their normal physiological functions. The speed with which bio-molecular homeostatic regulation occurs directly determines the ability of an organism to adapt to conditional changes. To produce a quick-responsive regulatory system that can be easily utilized for various types of homeostasis, a device called nano-fingers that facilitates the regulation of physiological processes was constructed using DNA origami nanotechnology. This nano-fingers device functioned in linked open and closed phases using two types of DNA tweezers, which were covalently coupled with aptamers that captured specific molecules when the tweezer arms were sufficiently close. Via this specific interaction mechanism, certain physiological processes could be simultaneously regulated from two directions by capturing one biofactor and releasing the other to enhance the regulatory capacity of the device. To validate the universal application of this device, regulation of the homeostasis of the blood coagulant thrombin was attempted using the nano-fingers device. It was successfully demonstrated that this nano-fingers device achieved coagulation buffering upon the input of fuel DNA. This nano-device could also be utilized to regulate the homeostasis of other types of bio-molecules.

  16. Nanoscale Biomolecular Detection Limit for Gold Nanoparticles Based on Near-Infrared Response

    Directory of Open Access Journals (Sweden)

    Mario D’Acunto

    2012-01-01

    Full Text Available Gold nanoparticles have been widely used during the past few years in various technical and biomedical applications. In particular, the resonance optical properties of nanometer-sized particles have been employed to design biochips and biosensors used as analytical tools. The optical properties of nonfunctionalized gold nanoparticles and core-gold nanoshells play a crucial role for the design of biosensors where gold surface is used as a sensing component. Gold nanoparticles exhibit excellent optical tunability at visible and near-infrared frequencies leading to sharp peaks in their spectral extinction. In this paper, we study how the optical properties of gold nanoparticles and core-gold nanoshells are changed as a function of different sizes, shapes, composition, and biomolecular coating with characteristic shifts towards the near-infrared region. We show that the optical tenability can be carefully tailored for particle sizes falling in the range 100–150 nm. The results should improve the design of sensors working at the detection limit.

  17. Potential-of-mean-force description of ionic interactions and structural hydration in biomolecular systems

    Energy Technology Data Exchange (ETDEWEB)

    Hummer, G.; Garcia, A.E. [Los Alamos National Lab., NM (United States). Theoretical Biology and Biophysics Group; Soumpasis, D.M. [Max-Planck-Inst for Biophysical Chemistry, Goettingen (Germany). Biocomputation Group

    1994-10-01

    To understand the functioning of living organisms on a molecular level, it is crucial to dissect the intricate interplay of the immense number of biological molecules. Most of the biochemical processes in cells occur in a liquid environment formed mainly by water and ions. This solvent environment plays an important role in biological systems. The potential-of-mean-force (PMF) formalism attempts to describe quantitatively the interactions of the solvent with biological macromolecules on the basis of an approximate statistical-mechanical representation. At its current status of development, it deals with ionic effects on the biomolecular structure and with the structural hydration of biomolecules. The underlying idea of the PMF formalism is to identify the dominant sources of interactions and incorporate these interactions into the theoretical formalism using PMF`s (or particle correlation functions) extracted from bulk-liquid systems. In the following, the authors shall briefly outline the statistical-mechanical foundation of the PMF formalism and introduce the PMF expansion formalism, which is intimately linked to superposition approximations for higher-order particle correlation functions. The authors shall then sketch applications, which describe the effects of the ionic environment on nucleic-acid structure. Finally, the authors shall present the more recent extension of the PMF idea to describe quantitatively the structural hydration of biomolecules. Results for the interface of ice and water and for the hydration of deoxyribonucleic acid (DNA) will be discussed.

  18. Computational Recipe for Efficient Description of Large-Scale Conformational Changes in Biomolecular Systems.

    Science.gov (United States)

    Moradi, Mahmoud; Tajkhorshid, Emad

    2014-07-01

    Characterizing large-scale structural transitions in biomolecular systems poses major technical challenges to both experimental and computational approaches. On the computational side, efficient sampling of the configuration space along the transition pathway remains the most daunting challenge. Recognizing this issue, we introduce a knowledge-based computational approach toward describing large-scale conformational transitions using (i) nonequilibrium, driven simulations combined with work measurements and (ii) free energy calculations using empirically optimized biasing protocols. The first part is based on designing mechanistically relevant, system-specific reaction coordinates whose usefulness and applicability in inducing the transition of interest are examined using knowledge-based, qualitative assessments along with nonequilirbrium work measurements which provide an empirical framework for optimizing the biasing protocol. The second part employs the optimized biasing protocol resulting from the first part to initiate free energy calculations and characterize the transition quantitatively. Using a biasing protocol fine-tuned to a particular transition not only improves the accuracy of the resulting free energies but also speeds up the convergence. The efficiency of the sampling will be assessed by employing dimensionality reduction techniques to help detect possible flaws and provide potential improvements in the design of the biasing protocol. Structural transition of a membrane transporter will be used as an example to illustrate the workings of the proposed approach.

  19. The use of virtual ground to control transmembrane voltages and measure bilayer currents in serial arrays of droplet interface bilayers

    Science.gov (United States)

    Sarles, Stephen A.

    2013-09-01

    The droplet interface bilayer (DIB) is a simple technique for constructing a stable lipid bilayer at the interface of two lipid-encased water droplets submerged in oil. Networks of DIBs formed by connecting more than two droplets constitute a new form of modular biomolecular smart material, where the transduction properties of a single lipid bilayer can affect the actions performed at other interface bilayers in the network via diffusion through the aqueous environments of shared droplet connections. The passive electrical properties of a lipid bilayer and the arrangement of droplets that determine the paths for transport in the network require specific electrical control to stimulate and interrogate each bilayer. Here, we explore the use of virtual ground for electrodes inserted into specific droplets in the network and employ a multichannel patch clamp amplifier to characterize bilayer formation and ion-channel activity in a serial DIB array. Analysis of serial connections of DIBs is discussed to understand how assigning electrode connections to the measurement device can be used to measure activity across all lipid membranes within a network. Serial arrays of DIBs are assembled using the regulated attachment method within a multi-compartment flexible substrate, and wire-type electrodes inserted into each droplet compartment of the substrate enable the application of voltage and measurement of current in each droplet in the array.

  20. Self-assembled breath figure arrays of conjugated conducting polymers for photovoltaic application

    Science.gov (United States)

    Routh, Prahlad Kumar; Venkatesh, T. A.; Cotlet, Mircea

    2014-03-01

    Ordered microporous polymer structures have potential application in catalysis, surface engineering and optoelectronics. The Breath Figure Technique (BFT) is a simple method of producing such ordered microporous structures. In this study BFT was applied to a series of commercial conjugated polymer polythiophene derivatives with varying side chain length (n =6,8,10,12). An in-depth study of processing parameters has been carried with the aim of controlling the morphology of the honeycomb film over large, PV relevant areas. Structural and spectroscopic characterization of honeycomb films were performed using Scanning Electron Microscopy (SEM), X-ray scattering, Fluorescence Lifetime Imaging (FLIM) and Spectroscopy. Blends of these polymers with a fullerene derivative, PCBM, were also subjected to BFT and characterized with similar methods to assess their potential use as active layers in PV solar cells. Center for Functional Nanomaterials, Brookhaven National Laboratory.

  1. Computational methods to study the structure and dynamics of biomolecules and biomolecular processes from bioinformatics to molecular quantum mechanics

    CERN Document Server

    2014-01-01

    Since the second half of the 20th century machine computations have played a critical role in science and engineering. Computer-based techniques have become especially important in molecular biology, since they often represent the only viable way to gain insights into the behavior of a biological system as a whole. The complexity of biological systems, which usually needs to be analyzed on different time- and size-scales and with different levels of accuracy, requires the application of different approaches, ranging from comparative analysis of sequences and structural databases, to the analysis of networks of interdependence between cell components and processes, through coarse-grained modeling to atomically detailed simulations, and finally to molecular quantum mechanics. This book provides a comprehensive overview of modern computer-based techniques for computing the structure, properties and dynamics of biomolecules and biomolecular processes. The twenty-two chapters, written by scientists from all over t...

  2. Bases biomoleculares do fotoenvelhecimento Molecular basis of photoaging

    Directory of Open Access Journals (Sweden)

    Suelen Montagner

    2009-07-01

    Full Text Available Com o aumento da expectativa de vida, o estudo do processo de envelhecimento orgânico tem sido estimulado. O envelhecimento da pele, órgão que espelha os sinais do tempo, é processo de deterioração progressiva, tempo-dependente, e pode ser intensificado pela exposição solar, então designado fotoenvelhecimento. O dano das radiações sobre diversas estruturas celulares e cutâneas leva a alterações morfológicas nesses componentes, fruto de modificações biomoleculares. Muitas pesquisas são desenvolvidas com o intuito de combater ou minimizar os efeitos do fotoenvelhecimento, porém a principal estratégia nesse sentido continua sendo a prevenção, só conseguida pelo progressivo desvendar dos mecanismos fisiopatogênicos envolvidos nesse processo.As a result of the increase in life expectancy, the study of the organic process of aging has been stimulated. Skin ageing, which reflects the signs of time, is a time-dependent process of progressive deterioration that can be intensified by sun exposure, which is known as photoaging. The damage of radiation on various cell structures and on the skin results in molecular and morphological changes to these components. Many research studies are performed to try to minimize the effects of photoaging; however, the main strategy to manage it is still prevention, which will only be achieved once we learn about the mechanisms involved in the process.

  3. Bridging Nano- and Microtribology in Mechanical and Biomolecular Layers

    Science.gov (United States)

    Tomala, Agnieszka; Göçerler, Hakan; Gebeshuber, Ille C.

    The physical and chemical composition of surfaces determine various important properties of solids such as corrosion rates, adhesive properties, frictional properties, catalytic activity, wettability, contact potential and - finally and most importantly - failure mechanisms. Very thin, weak layers (of man-made and biological origin) on much harder substrates that reduce friction are the focus of the micro- and nanotribological investigations presented in this chapter.Biomolecular layers fulfil various functions in organs of the human body. Examples comprise the skin that provides a protective physical barrier between the body and the environment, preventing unwanted inward and outward passage of water and electrolytes, reducing penetration by destructive chemicals, arresting the penetration of microorganisms and external antigens and absorbing radiation from the sun, or the epithelium of the cornea that blocks the passage of foreign material, such as dust, water and bacteria, into the eye and that contributes to the lubrication layer that ensures smooth movement of the eyelids over the eyeballs.Monomolecular thin films, additive-derived reaction layers and hard coatings are widely used to tailor tribological properties of surfaces. Nanotribological investigations on these substrates can reveal novel properties regarding the orientation of chemisorbed additive layers, development of rubbing films with time and the relation of frictional properties to surface characteristics in diamond coatings.Depending on the questions to be answered with the tribological research, various micro- and nanotribological measurement methods are applied, including scanning probe microscopy (AFM, FFM), scanning electron microscopy, microtribometer investigations, angle-resolved photoelectron spectroscopy and optical microscopy. Thoughts on the feasibility of a unified approach to energy-dissipating systems and how it might be reached (touching upon new ways of scientific publishing

  4. A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species

    Energy Technology Data Exchange (ETDEWEB)

    Geraldes, Armando [University of British Columbia, Vancouver; Hannemann, Jan [University of Victoria, Canada; Grassa, Chris [University of British Columbia, Vancouver; Farzaneh, Nima [University of British Columbia, Vancouver; Porth, Ilga [University of British Columbia, Vancouver; McKown, Athena [University of British Columbia, Vancouver; Skyba, Oleksandr [University of British Columbia, Vancouver; Li, Eryang [University of British Columbia, Vancouver; Mike, Fujita [University of British Columbia, Vancouver; Friedmann, Michael [University of British Columbia, Vancouver; Wasteneys, Geoffrey [University of British Columbia, Vancouver; Guy, Robert [University of British Columbia, Vancouver; El-Kassaby, Yousry [University of British Columbia, Vancouver; Mansfield, Shawn [University of British Columbia, Vancouver; Cronk, Quentin [University of British Columbia, Vancouver; Ehlting, Juergen [University of Victoria, Canada; Douglas, Carl [University of British Columbia, Vancouver; DiFazio, Stephen P [West Virginia University, Morgantown; Slavov, Gancho [West Virginia University, Morgantown; Ranjan, Priya [ORNL; Muchero, Wellington [ORNL; Gunter, Lee E [ORNL; Wymore, Ann [ORNL; Tuskan, Gerald A [ORNL; Martin, Joel [U.S. Department of Energy, Joint Genome Institute; Schackwitz, Wendy [U.S. Department of Energy, Joint Genome Institute; Pennacchio, Christa [U.S. Department of Energy, Joint Genome Institute; Rokhsar, Daniel [U.S. Department of Energy, Joint Genome Institute

    2013-01-01

    Genetic mapping of quantitative traits requires genotypic data for large numbers of markers in many individuals. Despite the declining costs of genotyping by sequencing, for most studies, the use of large SNP genotyping arrays still offers the most cost-effective solution for large-scale targeted genotyping. Here we report on the design and performance of a SNP genotyping array for Populus trichocarpa (black cottonwood). This genotyping array was designed with SNPs pre-ascertained in 34 wild accessions covering most of the species range. Due to the rapid decay of linkage disequilibrium in P. trichocarpa we adopted a candidate gene approach to the array design that resulted in the selection of 34,131 SNPs, the majority of which are located in, or within 2 kb, of 3,543 candidate genes. A subset of the SNPs (539) was selected based on patterns of variation among the SNP discovery accessions. We show that more than 95% of the loci produce high quality genotypes and that the genotyping error rate for these is likely below 2%, indicating that high-quality data are generated with this array. We demonstrate that even among small numbers of samples (n=10) from local populations over 84% of loci are polymorphic. We also tested the applicability of the array to other species in the genus and found that due to ascertainment bias the number of polymorphic loci decreases rapidly with genetic distance, with the largest numbers detected in other species in section Tacamahaca (P. balsamifera and P. angustifolia). Finally, we provide evidence for the utility of the array for intraspecific studies of genetic differentiation and for species assignment and the detection of natural hybrids.

  5. Tactile Sensing System Based on Arrays of Graphene Woven Microfabrics: Electromechanical Behavior and Electronic Skin Application.

    Science.gov (United States)

    Yang, Tingting; Wang, Wen; Zhang, Hongze; Li, Xinming; Shi, Jidong; He, Yijia; Zheng, Quan-shui; Li, Zhihong; Zhu, Hongwei

    2015-11-24

    Nanomaterials serve as promising candidates for strain sensing due to unique electromechanical properties by appropriately assembling and tailoring their configurations. Through the crisscross interlacing of graphene microribbons in an over-and-under fashion, the obtained graphene woven fabric (GWF) indicates a good trade-off between sensitivity and stretchability compared with those in previous studies. In this work, the function of woven fabrics for highly sensitive strain sensing is investigated, although network configuration is always a strategy to retain resistance stability. The experimental and simulation results indicate that the ultrahigh mechanosensitivity with gauge factors of 500 under 2% strain is attributed to the macro-woven-fabric geometrical conformation of graphene, which induces a large interfacial resistance between the interlaced ribbons and the formation of microscale-controllable, locally oriented zigzag cracks near the crossover location, both of which have a synergistic effect on improving sensitivity. Meanwhile, the stretchability of the GWF could be tailored to as high as over 40% strain by adjusting graphene growth parameters and adopting oblique angle direction stretching simultaneously. We also demonstrate that sensors based on GWFs are applicable to human motion detection, sound signal acquisition, and spatially resolved monitoring of external stress distribution.

  6. Transparent, well-aligned TiO(2) nanotube arrays with controllable dimensions on glass substrates for photocatalytic applications.

    Science.gov (United States)

    Tan, Lee Kheng; Kumar, Manippady K; An, Wen Wen; Gao, Han

    2010-02-01

    Transparent, well-aligned TiO(2) nanotube arrays (NTAs) with controllable dimensions are grown on glass substrates via atomic layer deposition (ALD) of TiO(2) onto free-standing porous anodic alumina (PAA) templates. Photodegradation of aqueous methylene blue (MB) solution and solid stearic acid (SA) film using TiO(2) NTAs of various wall thicknesses are investigated. The Pd functionalized TiO(2) NTAs, with a wall thickness of 15 nm and height of 200 nm, has the highest photodegradation efficiency at 76% after 4 h of UV irradiation. These functionalized NTAs are able to photodegrade MB molecules completely as no obvious demethylated byproducts are observed during the process. It also demonstrates excellent photocatalytic activity for solid contaminants such as SA film. By using the ALD technique, the nanotube wall thickness can be precisely controlled so that it is sufficiently thin to be transparent while sufficiently thick for excellent photocatalytic performances. The transparent TiO(2) NTAs on glass substrates with excellent photocatalytic properties might have potential applications in self-cleaning coating, transparent electronics, and solar cells.

  7. Preparation and Application of TiO2 Nanotube Array Gas Sensor for SF6-Insulated Equipment Detection: a Review

    Science.gov (United States)

    Zhang, Xiaoxing; Gui, Yingang; Dong, Xingchen

    2016-06-01

    Since Zwilling and co-workers first introduced the electrochemical anodization method to prepare TiO2 nanotubes in 1999, it has attracted a lot of researches due to its outstanding gas response and selectivity, making it widely used in gas detection field. This review presents an introduction to the sensor applications of TiO2 nanotube arrays (TNTAs) in sulfur hexafluoride (SF6)-insulated equipment, which is used to evaluate and diagnose the insulation status of SF6-insulated equipment by detecting their typical decomposition products of SF6: sulfur dioxide (SO2), thionyl fluoride (SOF2), and sulfuryl fluoride (SO2F2). The synthesis and sensing properties of TiO2 nanotubes are discussed first. Then, it is followed by discussing the theoretical sensing to the typical SF6 decomposition products, SO2, SOF2, and SO2F2, which analyzes the sensing mechanism at the molecular level. Finally, the gas response of pure and modified TiO2 nanotubes sensor to SO2, SOF2, and SO2F2 is provided according to the change of resistance in experimental observation.

  8. Compact self-grounded Bow-Tie antenna design for an UWB phased-array hyperthermia applicator.

    Science.gov (United States)

    Takook, Pegah; Persson, Mikael; Gellermann, Johanna; Trefná, Hana Dobšíček

    2017-01-08

    Using UWB hyperthermia systems has the potential to improve the heat delivery to deep seated tumours. In this paper, we present a novel self-grounded Bow-Tie antenna design which is to serve as the basis element in a phased-array applicator. The UWB operation in the frequency range of 0.43-1 GHz is achieved by immersing the antenna in a water bolus. The radiation characteristics are improved by appropriate shaping the water bolus and by inclusion of dielectric layers on the top of the radiating arms of the antenna. In order to find the most appropriate design, we use a combination of performance indicators representing the most important attributes of the antenna. These are the UWB impedance matching, the transmission capability and the effective field size. The antenna was constructed and experimentally validated on muscle-like phantom. The measured reflection and transmission coefficients as well as radiation characteristics are in excellent agreement with the simulated results. MR image acquisitions with antenna located inside MR bore indicate a negligible distortion of the images by the antenna itself, which indicates MR compatibility.

  9. A Planar Switchable 3D-Coverage Phased Array Antenna and Its User Effects for 28 GHz Mobile Terminal Applications

    DEFF Research Database (Denmark)

    Zhang, Shuai; Chen, Xiaoming; Syrytsin, Igor A.

    2017-01-01

    effects on the switchable array are also studied in both data mode and talk mode (voice) at 28 GHz. In talk mode, good directivity and beam switching can be realized by placing the switchable array at the top of the chassis (close to the index finger). And the user shadowing can be significantly reduced...

  10. Mining, modeling, and evaluation of subnetworks from large biomolecular networks and its comparison study.

    Science.gov (United States)

    Hu, Xiaohua; Ng, Michael; Wu, Fang-Xiang; Sokhansanj, Bahrad A

    2009-03-01

    In this paper, we present a novel method to mine, model, and evaluate a regulatory system executing cellular functions that can be represented as a biomolecular network. Our method consists of two steps. First, a novel scale-free network clustering approach is applied to such a biomolecular network to obtain various subnetworks. Second, computational models are generated for the subnetworks and simulated to predict their behavior in the cellular context. We discuss and evaluate some of the advanced computational modeling approaches, in particular, state-space modeling, probabilistic Boolean network modeling, and fuzzy logic modeling. The modeling and simulation results represent hypotheses that are tested against high-throughput biological datasets (microarrays and/or genetic screens) under normal and perturbation conditions. Experimental results on time-series gene expression data for the human cell cycle indicate that our approach is promising for subnetwork mining and simulation from large biomolecular networks.

  11. Sop-GPU: accelerating biomolecular simulations in the centisecond timescale using graphics processors.

    Science.gov (United States)

    Zhmurov, A; Dima, R I; Kholodov, Y; Barsegov, V

    2010-11-01

    Theoretical exploration of fundamental biological processes involving the forced unraveling of multimeric proteins, the sliding motion in protein fibers and the mechanical deformation of biomolecular assemblies under physiological force loads is challenging even for distributed computing systems. Using a C(α)-based coarse-grained self organized polymer (SOP) model, we implemented the Langevin simulations of proteins on graphics processing units (SOP-GPU program). We assessed the computational performance of an end-to-end application of the program, where all the steps of the algorithm are running on a GPU, by profiling the simulation time and memory usage for a number of test systems. The ∼90-fold computational speedup on a GPU, compared with an optimized central processing unit program, enabled us to follow the dynamics in the centisecond timescale, and to obtain the force-extension profiles using experimental pulling speeds (v(f) = 1-10 μm/s) employed in atomic force microscopy and in optical tweezers-based dynamic force spectroscopy. We found that the mechanical molecular response critically depends on the conditions of force application and that the kinetics and pathways for unfolding change drastically even upon a modest 10-fold increase in v(f). This implies that, to resolve accurately the free energy landscape and to relate the results of single-molecule experiments in vitro and in silico, molecular simulations should be carried out under the experimentally relevant force loads. This can be accomplished in reasonable wall-clock time for biomolecules of size as large as 10(5) residues using the SOP-GPU package.

  12. Protein Functionalized Nanodiamond Arrays

    Directory of Open Access Journals (Sweden)

    Liu YL

    2010-01-01

    Full Text Available Abstract Various nanoscale elements are currently being explored for bio-applications, such as in bio-images, bio-detection, and bio-sensors. Among them, nanodiamonds possess remarkable features such as low bio-cytotoxicity, good optical property in fluorescent and Raman spectra, and good photostability for bio-applications. In this work, we devise techniques to position functionalized nanodiamonds on self-assembled monolayer (SAMs arrays adsorbed on silicon and ITO substrates surface using electron beam lithography techniques. The nanodiamond arrays were functionalized with lysozyme to target a certain biomolecule or protein specifically. The optical properties of the nanodiamond-protein complex arrays were characterized by a high throughput confocal microscope. The synthesized nanodiamond-lysozyme complex arrays were found to still retain their functionality in interacting with E. coli.

  13. iBIOMES: managing and sharing biomolecular simulation data in a distributed environment.

    Science.gov (United States)

    Thibault, Julien C; Facelli, Julio C; Cheatham, Thomas E

    2013-03-25

    Biomolecular simulations, which were once batch queue or compute limited, have now become data analysis and management limited. In this paper we introduce a new management system for large biomolecular simulation and computational chemistry data sets. The system can be easily deployed on distributed servers to create a mini-grid at the researcher's site. The system not only offers a simple data deposition mechanism but also a way to register data into the system without moving the data from their original location. Any registered data set can be searched and downloaded using a set of defined metadata for molecular dynamics and quantum mechanics and visualized through a dynamic Web interface.

  14. Hybridization characteristics of biomolecular adaptors, covalent DNA streptavidin conjugates

    NARCIS (Netherlands)

    Niemeyer, CM; Burger, W; Hoedemakers, RMJ

    1998-01-01

    Semisynthetic, covalent streptavidin-DNA adducts are versatile molecular connectors for the fabrication of both nano-and microstructured protein arrays by use of DNA hybridization. In this study, the hybridization characteristics of six adduct species, each containing a different DNA sequence of 21

  15. Output-input ratio in thermally fluctuating biomolecular machines.

    Science.gov (United States)

    Kurzynski, Michal; Torchala, Mieczyslaw; Chelminiak, Przemyslaw

    2014-01-01

    Biological molecular machines are proteins that operate under isothermal conditions and hence are referred to as free energy transducers. They can be formally considered as enzymes that simultaneously catalyze two chemical reactions: the free energy-donating (input) reaction and the free energy-accepting (output) one. Most if not all biologically active proteins display a slow stochastic dynamics of transitions between a variety of conformational substates composing their native state. This makes the description of the enzymatic reaction kinetics in terms of conventional rate constants insufficient. In the steady state, upon taking advantage of the assumption that each reaction proceeds through a single pair (the gate) of transition conformational substates of the enzyme-substrates complex, the degree of coupling between the output and the input reaction fluxes has been expressed in terms of the mean first-passage times on a conformational transition network between the distinguished substates. The theory is confronted with the results of random-walk simulations on the five-dimensional hypercube. The formal proof is given that, for single input and output gates, the output-input degree of coupling cannot exceed unity. As some experiments suggest such exceeding, looking for the conditions for increasing the degree of coupling value over unity challenges the theory. Performed simulations of random walks on several model networks involving more extended gates indicate that the case of the degree of coupling value higher than 1 is realized in a natural way on critical branching trees extended by long-range shortcuts. Such networks are scale-free and display the property of the small world. For short-range shortcuts, the networks are scale-free and fractal, representing a reasonable model for biomolecular machines displaying tight coupling, i.e., the degree of coupling equal exactly to unity. A hypothesis is stated that the protein conformational transition networks, as

  16. A Broadband High-Gain Bi-Layer Log-Periodic Dipole Array (LPDA) for Ultra High Frequency (UHF) Conformal Load Bearing Antenna Structures (CLAS) Applications

    Science.gov (United States)

    2014-08-01

    antenna ,’’ IEEE Trans. Antennas Propag., Vol. 57, pp. 3458-3466, Nov. 2009. [12] A. Calmon, G. Pacheco, M.A.B. Terada, “A novel reconfigurable UWB log...Frequency reconfigurable compact multiband quasi-log periodic dipole array (QLPDA) antenna for wireless communications,’’ 2010 IEEE Antennas and...BEARING ANTENNA STRUCTURES (CLAS) APPLICATIONS Nicholas A. Bishop and Mohammod Ali University of South Carolina Jason Miller, David L. Zeppettella

  17. Low concentration ratio solar array for low Earth orbit multi-100kW application. Volume 2: Drawings

    Science.gov (United States)

    Nalbandian, S. J.; French, E. P.

    1982-01-01

    A preliminary design effort directed toward a low concentration ratio photovoltaic array system based on 1984 technology and capable of delivering multi-hundred kilowatts (300 kW to 100 kW range) in low Earth orbit. The array system consists of two or more array modules each capable of delivering between 113 kW to 175 kW using silicon solar cells or gallium arsenide solar cells, respectively. The array module deployed area is 1320 square meters and consists of 4356 pyramidal concentrator elements. The module, when stowed in the Space Shuttle's payload bay, has a stowage volume of a cube with 3.24 meters on a side. The concentrator elements are sized for a geometric concentration ratio (GCR) of six with an aperture area of 0.5 meters x 0.5 meters. Drawings for the preliminary design configuration and for the test hardware that was fabricated for design evaluation and test are provided.

  18. Horizontally-aligned carbon nanotubes arrays and their interactions with liquid crystal molecules: Physical characteristics and display applications

    Directory of Open Access Journals (Sweden)

    Frédérick Roussel

    2012-03-01

    Full Text Available We report on the physical characteristics of horizonthally-grown Single-Walled Carbon Nanotubes (h-al-SWNT arrays and their potential use as transparent and conducting alignment layer for liquid crystals display devices. Microscopy (SEM and AFM, spectroscopic (Raman and electrical investigations demonstrate the strong anisotropy of h-al-SWNT arrays. Optical measurements show that h-al-SWNTs are efficient alignment layers for Liquid Crystal (LC molecules allowing the fabrication of optical wave plates. Interactions between h-al-SWNT arrays and LC molecules are also investigated evidencing the weak azimuthal anchoring energy at the interface, which, in turn, leads to LC devices with a high pretilt angle. The electro-optical reponses of h-al-SWNT/LC cells demonstrate that h-al-SWNT arrays are efficient nanostructured electrodes with potential use for the combined replacement of Indium Tin Oxyde and polymeric alignment layers in conventional displays.

  19. Studies on a 120 degrees segmented circular array for multi-beam multi-frequency bathymetric application

    Digital Repository Service at National Institute of Oceanography (India)

    Chakraborty, B.

    A theoretical analysis of the vertical for field patterns and input impedances, as well as excitation velocities of a 120 degrees segmented circular array of 40 groups of four elements each is performed. The narrowest beam widths at normal incidence...

  20. Design and Application of Wuhan Ionospheric Oblique Backscattering Sounding System with the Addition of an Antenna Array (WIOBSS-AA).

    Science.gov (United States)

    Cui, Xiao; Chen, Gang; Wang, Jin; Song, Huan; Gong, Wanlin

    2016-06-15

    The Wuhan Ionospheric Oblique Backscattering Sounding System with the addition of an antenna array (WIOBSS-AA) is the newest member of the WIOBSS family. It is a multi-channel radio system using phased-array antenna technology. The transmitting part of this radio system applies an array composed of five log-periodic antennas to form five beams that span an area to the northwest of the radar site. The hardware and the antenna array of the first multi-channel ionosonde in the WIOBSS family are introduced in detail in this paper. An ionospheric detection experiment was carried out in Chongyang, Hubei province, China on 16 March 2015 to examine the performance of WIOBSS-AA. The radio system demonstrated its ability to obtain ionospheric electron density information over a wide area. The observations indicate that during the experiment, the monitored large-area ionospheric F2-layer was calm and electron density increased with decreasing latitude.

  1. Low-temperature growth of well-aligned zinc oxide nanorod arrays on silicon substrate and their photocatalytic application.

    Science.gov (United States)

    Azam, Ameer; Babkair, Saeed Salem

    2014-01-01

    Well-aligned and single-crystalline zinc oxide (ZnO) nanorod arrays were grown on silicon (Si) substrate using a wet chemical route for the photodegradation of organic dyes. Structural analysis using X-ray diffraction, high-resolution transmission electron microscopy, and selected area electron diffraction confirmed the formation of ZnO nanorods grown preferentially oriented in the (001) direction and with a single phase nature with a wurtzite structure. Field emission scanning electron microscopy and transmission electron microscopy micrographs showed that the length and diameter of the well-aligned rods were about ~350-400 nm and ~80-90 nm, respectively. Raman scattering spectra of ZnO nanorod arrays revealed the characteristic E2 (high) mode that is related to the vibration of oxygen atoms in the wurtzite ZnO. The photodegradation of methylene blue (MB) using ZnO nanorod arrays was performed under ultraviolet light irradiation. The results of photodegradation showed that ZnO nanorod arrays were capable of degrading ~80% of MB within 60 minutes of irradiation, whereas ~92% of degradation was achieved in 120 minutes. Complete degradation of MB was observed after 270 minutes of irradiation time. Owing to enhanced photocatalytic degradation efficiency and low-temperature growth method, prepared ZnO nanorod arrays may open up the possibility for the successful utilization of ZnO nanorod arrays as a future photocatalyst for environmental remediation.

  2. Design and implementation of a space domain spherical microphone array with application to source localization and separation.

    Science.gov (United States)

    Bai, Mingsian R; Yao, Yueh Hua; Lai, Chang-Sheng; Lo, Yi-Yang

    2016-03-01

    In this paper, four delay-and-sum (DAS) beamformers formulated in the modal domain and the space domain for open and solid spherical apertures are examined through numerical simulations. The resulting beampatterns reveal that the mainlobe of the solid spherical DAS array is only slightly narrower than that of the open array, whereas the sidelobes of the modal domain array are more significant than those of the space domain array due to the discrete approximation of continuous spherical Fourier transformation. To verify the theory experimentally, a three-dimensionally printed spherical array on which 32 micro-electro-mechanical system microphones are mounted is utilized for localization and separation of sound sources. To overcome the basis mismatch problem in signal separation, source localization is first carried out using minimum variance distortionless response beamformer. Next, Tikhonov regularization (TIKR) and compressive sensing (CS) are employed to extract the source signal amplitudes. Simulations and experiments are conducted to validate the proposed spherical array system. Objective perceptual evaluation of speech quality test and a subjective listening test are undertaken in performance evaluation. The experimental results demonstrate better separation quality achieved by the CS approach than by the TIKR approach at the cost of computational complexity.

  3. AfricaArray International Geophysics Field School: Applications of Near Surface Geophysics to challenges encountered in mine planning

    Science.gov (United States)

    Webb, S. J.; Jones, M. Q.; Durrheim, R. J.; Nyblade, A.; Snyman, Q.

    2012-12-01

    Hard rock exploration and mining presents many opportunities for the effective use of near surface geophysics. For over 10 years the AfricaArray international geophysics field school has been hosted at a variety of mines in South Africa. While the main objective of the field school is practical training for the next generation of geophysicists, being hosted at a mine has allowed us to investigate applications of near surface geophysics in the early stages of mine planning and development as geophysics is often cheaper and faster than drilling. Several applications include: detailed delineation of dykes and stringer dykes, physical property measurements on drill core for modeling and marker horizons, determination of overburden thickness, locations of water and faults. Dolerite dykes are usually magnetic and are associated with loss of ground (i.e. where the dyke replaces the ore and thus reduces the amount of ore available) and safety/stability concerns. Thus the accurate mapping of dykes and narrow stringers that are associated with them are crucial to the safe planning of a mine. We have acquired several case studies where ground magnetic surveys have greatly improved on the resolution and detail of airborne magnetic surveys in regions of complicated dyke swarms. In many cases, thin stringer dykes of less than 5 cm have been detected. Physical property measurements of these dykes can be used to distinguish between different ages of dykes. It is important to accurately determine overburden thickness when planning an open pit mine as this directly affects the cost of development. Depending on the nature of the overburden, both refraction seismic and or DC resistivity can provide continuous profiling in the area of interest that fills in gaps between boreholes. DC resistivity is also effective for determining water associated with dykes and structures that may affect mine planning. The field school mainly addresses the training of a variety of students. The core

  4. Real-time PCR array as a universal platform for the detection of genetically modified crops and its application in identifying unapproved genetically modified crops in Japan.

    Science.gov (United States)

    Mano, Junichi; Shigemitsu, Natsuki; Futo, Satoshi; Akiyama, Hiroshi; Teshima, Reiko; Hino, Akihiro; Furui, Satoshi; Kitta, Kazumi

    2009-01-14

    We developed a novel type of real-time polymerase chain reaction (PCR) array with TaqMan chemistry as a platform for the comprehensive and semiquantitative detection of genetically modified (GM) crops. Thirty primer-probe sets for the specific detection of GM lines, recombinant DNA (r-DNA) segments, endogenous reference genes, and donor organisms were synthesized, and a 96-well PCR plate was prepared with a different primer-probe in each well as the real-time PCR array. The specificity and sensitivity of the array were evaluated. A comparative analysis with the data and publicly available information on GM crops approved in Japan allowed us to assume the possibility of unapproved GM crop contamination. Furthermore, we designed a Microsoft Excel spreadsheet application, Unapproved GMO Checker version 2.01, which helps process all the data of real-time PCR arrays for the easy assumption of unapproved GM crop contamination. The spreadsheet is available free of charge at http://cse.naro.affrc.go.jp/jmano/index.html .

  5. Controllable Synthesis of Copper Oxide/Carbon Core/Shell Nanowire Arrays and Their Application for Electrochemical Energy Storage

    Science.gov (United States)

    Zhan, Jiye; Chen, Minghua; Xia, Xinhui

    2015-01-01

    Rational design/fabrication of integrated porous metal oxide arrays is critical for the construction of advanced electrochemical devices. Herein, we report self-supported CuO/C core/shell nanowire arrays prepared by the combination of electro-deposition and chemical vapor deposition methods. CuO/C nanowires with diameters of ~400 nm grow quasi-vertically to the substrates forming three-dimensional arrays architecture. A thin carbon shell is uniformly coated on the CuO nanowire cores. As an anode of lithium ion batteries, the resultant CuO/C nanowire arrays are demonstrated to have high specific capacity (672 mAh·g−1 at 0.2 C) and good cycle stability (425 mAh·g−1 at 1 C up to 150 cycles). The core/shell arrays structure plays positive roles in the enhancement of Li ion storage due to fast ion/electron transfer path, good strain accommodation and sufficient contact between electrolyte and active materials.

  6. CdSe nanocrystal sensitized anatase TiO2 (001) tetragonal nanosheet-array films for photovoltaic application.

    Science.gov (United States)

    Feng, Shuanglong; Yang, Junyou; Liu, Ming; Liu, Yong

    2013-02-01

    CdSe nanocrystal sensitized TiO2 nanosheet array heterostructure films were fabricated by a two-step method. Firstly, a single crystalline anatase TiO2 tetragonal nanosheet-array film on a transparent conductive fluorine-doped tin oxide (FTO) substrate was successfully prepared by hydrothermal method. Then, CdSe nanocrystalline sensitizers were deposited on the TiO2 nanosheet array by CBD method. The products were characterized with XRD, SEM, TEM and UV-vis absorption spectroscopy. The effect of the CdSe nanocrystal deposition time and the length of the TiO2 sheet on the photovoltaic performance of the resulting CdSe/TiO2 nanosheet array electrodes were also investigated. In comparison with the non-sensitized TiO2 nanosheet array, the photocurrent of CdSe sensitized TiO2 nanosheet has a great enhancement, which gives some insight to the fundamental mechanism of the performance improvement.

  7. Plasmonic spectrum on 1D and 2D periodic arrays of rod-shape metal nanoparticle pairs with different core patterns for biosensor and solar cell applications

    Science.gov (United States)

    Kumara, N. T. R. N.; Chou Chau, Yuan-Fong; Huang, Jin-Wei; Huang, Hung Ji; Lin, Chun-Ting; Chiang, Hai-Pang

    2016-11-01

    Simulations of surface plasmon resonance (SPR) on the near field intensity and absorption spectra of one-dimensional (1D) and two-dimensional (2D) periodic arrays of rod-shape metal nanoparticle (MNP) pairs using the finite element method (FEM) and taking into account the different core patterns for biosensor and solar cell applications are investigated. A tunable optical spectrum corresponding to the transverse SPR modes is observed. The peak resonance wavelength (λ res) can be shifted to red as the core patterns in rod-shape MNPs have been changed. We find that the 2D periodic array of core-shell MNP pairs (case 2) exhibit a red shifted SPR that can be tuned the gap enhancement and absorption efficiency simultaneously over an extended wavelength range. The tunable optical performances give us a qualitative idea of the geometrical properties of the periodic array of rod-shape MNP pairs on SPRs that can be as a promising candidate for plasmonic biosensor and solar cell applications.

  8. Photovoltaic array performance model.

    Energy Technology Data Exchange (ETDEWEB)

    Kratochvil, Jay A.; Boyson, William Earl; King, David L.

    2004-08-01

    This document summarizes the equations and applications associated with the photovoltaic array performance model developed at Sandia National Laboratories over the last twelve years. Electrical, thermal, and optical characteristics for photovoltaic modules are included in the model, and the model is designed to use hourly solar resource and meteorological data. The versatility and accuracy of the model has been validated for flat-plate modules (all technologies) and for concentrator modules, as well as for large arrays of modules. Applications include system design and sizing, 'translation' of field performance measurements to standard reporting conditions, system performance optimization, and real-time comparison of measured versus expected system performance.

  9. Fabrication and characterization of well-aligned zinc oxide nanowire arrays and their realizations in Schottky-device applications

    Energy Technology Data Exchange (ETDEWEB)

    Wong, Kin Mun; Grote, Fabian; Sun, Hui; Lei, Yong [Institute of Materials Physics, Center for Nanotechnology, University of Muenster (Germany); Wen, Liaoyong; Fang, Yaoguo [Institute of Nanochemistry and Nanobiology, Shanghai University, Shanghai 201800 (China)

    2011-07-01

    Highly ordered arrays of vertical zinc oxide (ZnO) nanowires (NWs) or nanopores were fabricated in our group by first thermal evaporating a thin film of gold on the ultrathin alumina membrane (UTAM). The UTAM was then utilized as a substrate for the growth of the ordered arrays using a chemical vapour deposition (CVD) process. Alternatively, a modified CVD process was also used to fabricate ultra-long ZnO NWs with the length of the nanowire exceeding 100 micrometres. Subsequently, densely packed arrays of ZnO NWs Schottky diodes were synthesized by transferring the long NWs on a substrate using a dry contact printing method and the electrical contacts were made on the NWs with a photolithographic process. The interesting electrical properties of the ZnO NWs, diodes or other metal oxide NWs such as the field emission, electron transport and piezoelectric properties were characterized by current-voltage or by other appropriate measurements.

  10. Switched-beam array of dielectric rod antenna with RF-MEMS switch for millimeter-wave applications

    Science.gov (United States)

    Rousstia, M. W.; Reniers, A. C. F.; Herben, M. H. A. J.

    2015-03-01

    A conformal dielectric rod antenna array with operating frequency of 11.2 GHz is investigated, designed, and measured. This antenna array is combined with a single pole double throw radio frequency microelectromechanical systems (RF-MEMS) switch to realize switched-beam performance. Moreover, this antenna array exhibits uniform radiation performance for different scan angles with no grating lobes. The characterization and measurement of the antenna system have been performed. The measured radiation pattern of the antenna in the anechoic chamber is in good agreement with the simulated antenna pattern. The measured antenna with the RF-MEMS switch has 13.5 dBi realized gain, -15 dB sidelobe level, 22° half-power beamwidth, and 7.3% (fractional) bandwidth (or 800 MHz) at 11.2 GHz.

  11. Application of radial basis function networks for solar-array modelling and maximum power-point prediction

    Energy Technology Data Exchange (ETDEWEB)

    Al-Amoudi, A.; Zhang, L. [University of Leeds (United Kingdom). School of Electronic and Electrical Engineering

    2000-09-01

    A neural-network-based approach for solar array modelling is presented. The logic hidden unit of the proposed network consists of a set of nonlinear radial basis functions (RBFs) which are connected directly to the input vector. The links between hidden and output units are linear. The model can be trained using a random set of data collected from a real photovoltaic (PV) plant. The training procedures are fast and the accuracy of the trained models is comparable with that of the conventional model. The principle and training procedures of the RBF-network modelling when applied to emulate the I/V characteristics of PV arrays are discussed. Simulation results of the trained RBF networks for modelling a PV array and predicting the maximum power points of a real PV panel are presented. (author)

  12. Synthesis of CdS nanorod arrays and their applications in flexible piezo-driven active H2S sensors.

    Science.gov (United States)

    Wang, Penglei; Deng, Ping; Nie, Yuxin; Zhao, Yayu; Zhang, Yan; Xing, Lili; Xue, Xinyu

    2014-02-21

    A flexible piezo-driven active H2S sensor has been fabricated from CdS nanorod arrays. By coupling the piezoelectric and gas sensing properties of CdS nanorods, the piezoelectric output generated by CdS nanorod arrays acts not only as a power source, but also as a response signal to H2S. Under externally applied compressive force, the piezoelectric output of CdS nanorod arrays is very sensitive to H2S. Upon exposure to 600 ppm H2S, the piezoelectric output of the device decreased from 0.32 V (in air) to 0.12 V. Such a flexible device can be driven by the tiny mechanical energy in our living environment, such as human finger pinching. Our research can stimulate a research trend on designing new material systems and device structures for high-performance piezo-driven active gas sensors.

  13. Simple and cost-effective fabrication of microvalve arrays in PDMS using laser cut molds with application to C. elegans manipulation in microfluidics

    Science.gov (United States)

    Samuel, R.; Thacker, C. M.; Maricq, A. V.; Gale, B. K.

    2014-09-01

    We present a new fabrication protocol for fabricating pneumatically controlled microvalve arrays (consisting of 100 s of microvalves) in PDMS substrates. The protocol utilizes rapid and cost-effective fabrication of molds using laser cutting of adhesive vinyl tapes and replica molding of PDMS. Hence the protocol is fast, simple and avoids cleanroom use. The results show that effective doormat-style microvalves can be easily fabricated in arrays by manipulating the stiffness of the actuating membrane through varying the valve-chamber area/shape. Three frequently used valve-chamber shapes (circle, square and capsule) were tested and all showed advantages in different situations. Circular valve chambers were best for small valves, square valves were best for medium-sized valves, and the capsule valves were best for larger valves. An application of this protocol has been demonstrated in the fabrication of a microfluidic 32-well plate for high-throughput manipulation of C. elegans for biomedical research.

  14. Low-temperature growth of well-aligned zinc oxide nanorod arrays on silicon substrate and their photocatalytic application

    Directory of Open Access Journals (Sweden)

    Azam A

    2014-04-01

    Full Text Available Ameer Azam,1 Saeed Salem Babkair21Center of Nanotechnology, King Abdulaziz University, Jeddah, Saudi Arabia; 2Center of Nanotechnology, Department of Physics, Faculty of Science, King Abdulaziz University, Jeddah, Saudi ArabiaAbstract: Well-aligned and single-crystalline zinc oxide (ZnO nanorod arrays were grown on silicon (Si substrate using a wet chemical route for the photodegradation of organic dyes. Structural analysis using X-ray diffraction, high-resolution transmission electron microscopy, and selected area electron diffraction confirmed the formation of ZnO nanorods grown preferentially oriented in the (001 direction and with a single phase nature with a wurtzite structure. Field emission scanning electron microscopy and transmission electron microscopy micrographs showed that the length and diameter of the well-aligned rods were about ~350–400 nm and ~80–90 nm, respectively. Raman scattering spectra of ZnO nanorod arrays revealed the characteristic E2 (high mode that is related to the vibration of oxygen atoms in the wurtzite ZnO. The photodegradation of methylene blue (MB using ZnO nanorod arrays was performed under ultraviolet light irradiation. The results of photodegradation showed that ZnO nanorod arrays were capable of degrading ~80% of MB within 60 minutes of irradiation, whereas ~92% of degradation was achieved in 120 minutes. Complete degradation of MB was observed after 270 minutes of irradiation time. Owing to enhanced photocatalytic degradation efficiency and low-temperature growth method, prepared ZnO nanorod arrays may open up the possibility for the successful utilization of ZnO nanorod arrays as a future photocatalyst for environmental remediation.Keywords: ZnO, nanorods, XRD, photodegradation

  15. Parsimonious higher-order hidden Markov models for improved array-CGH analysis with applications to Arabidopsis thaliana.

    Directory of Open Access Journals (Sweden)

    Michael Seifert

    2012-01-01

    Full Text Available Array-based comparative genomic hybridization (Array-CGH is an important technology in molecular biology for the detection of DNA copy number polymorphisms between closely related genomes. Hidden Markov Models (HMMs are popular tools for the analysis of Array-CGH data, but current methods are only based on first-order HMMs having constrained abilities to model spatial dependencies between measurements of closely adjacent chromosomal regions. Here, we develop parsimonious higher-order HMMs enabling the interpolation between a mixture model ignoring spatial dependencies and a higher-order HMM exhaustively modeling spatial dependencies. We apply parsimonious higher-order HMMs to the analysis of Array-CGH data of the accessions C24 and Col-0 of the model plant Arabidopsis thaliana. We compare these models against first-order HMMs and other existing methods using a reference of known deletions and sequence deviations. We find that parsimonious higher-order HMMs clearly improve the identification of these polymorphisms. Moreover, we perform a functional analysis of identified polymorphisms revealing novel details of genomic differences between C24 and Col-0. Additional model evaluations are done on widely considered Array-CGH data of human cell lines indicating that parsimonious HMMs are also well-suited for the analysis of non-plant specific data. All these results indicate that parsimonious higher-order HMMs are useful for Array-CGH analyses. An implementation of parsimonious higher-order HMMs is available as part of the open source Java library Jstacs (www.jstacs.de/index.php/PHHMM.

  16. Parsimonious higher-order hidden Markov models for improved array-CGH analysis with applications to Arabidopsis thaliana.

    Science.gov (United States)

    Seifert, Michael; Gohr, André; Strickert, Marc; Grosse, Ivo

    2012-01-01

    Array-based comparative genomic hybridization (Array-CGH) is an important technology in molecular biology for the detection of DNA copy number polymorphisms between closely related genomes. Hidden Markov Models (HMMs) are popular tools for the analysis of Array-CGH data, but current methods are only based on first-order HMMs having constrained abilities to model spatial dependencies between measurements of closely adjacent chromosomal regions. Here, we develop parsimonious higher-order HMMs enabling the interpolation between a mixture model ignoring spatial dependencies and a higher-order HMM exhaustively modeling spatial dependencies. We apply parsimonious higher-order HMMs to the analysis of Array-CGH data of the accessions C24 and Col-0 of the model plant Arabidopsis thaliana. We compare these models against first-order HMMs and other existing methods using a reference of known deletions and sequence deviations. We find that parsimonious higher-order HMMs clearly improve the identification of these polymorphisms. Moreover, we perform a functional analysis of identified polymorphisms revealing novel details of genomic differences between C24 and Col-0. Additional model evaluations are done on widely considered Array-CGH data of human cell lines indicating that parsimonious HMMs are also well-suited for the analysis of non-plant specific data. All these results indicate that parsimonious higher-order HMMs are useful for Array-CGH analyses. An implementation of parsimonious higher-order HMMs is available as part of the open source Java library Jstacs (www.jstacs.de/index.php/PHHMM).

  17. Design and validation of a large-format transition edge sensor array magnetic shielding system for space application

    Science.gov (United States)

    Bergen, A.; van Weers, H. J.; Bruineman, C.; Dhallé, M. M. J.; Krooshoop, H. J. G.; ter Brake, H. J. M.; Ravensberg, K.; Jackson, B. D.; Wafelbakker, C. K.

    2016-10-01

    The paper describes the development and the experimental validation of a cryogenic magnetic shielding system for transition edge sensor based space detector arrays. The system consists of an outer mu-metal shield and an inner superconducting niobium shield. First, a basic comparison is made between thin-walled mu-metal and superconducting shields, giving an off-axis expression for the field inside a cup-shaped superconductor as a function of the transverse external field. Starting from these preliminary analytical considerations, the design of an adequate and realistic shielding configuration for future space flight applications (either X-IFU [D. Barret et al., e-print arXiv:1308.6784 [astro-ph.IM] (2013)] or SAFARI [B. Jackson et al., IEEE Trans. Terahertz Sci. Technol. 2, 12 (2012)]) is described in more detail. The numerical design and verification tools (static and dynamic finite element method (FEM) models) are discussed together with their required input, i.e., the magnetic-field dependent permeability data. Next, the actual manufacturing of the shields is described, including a method to create a superconducting joint between the two superconducting shield elements that avoid flux penetration through the seam. The final part of the paper presents the experimental verification of the model predictions and the validation of the shield's performance. The shields were cooled through the superconducting transition temperature of niobium in zero applied magnetic field (<10 nT) or in a DC field with magnitude ˜100 μT, applied either along the system's symmetry axis or perpendicular to it. After cool-down, DC trapped flux profiles were measured along the shield axis with a flux-gate magnetometer and the attenuation of externally applied AC fields (100 μT, 0.1 Hz, both axial and transverse) was verified along this axis with superconducting quantum interference device magnetometers. The system's measured on-axis shielding factor is greater than 106, well exceeding

  18. Left-handed compact MIMO antenna array based on wire spiral resonator for 5-GHz wireless applications

    Science.gov (United States)

    Alqadami, Abdulrahman Shueai Mohsen; Jamlos, Mohd Faizal; Soh, Ping Jack; Rahim, Sharul Kamal Abdul; Narbudowicz, Adam

    2017-01-01

    A compact coplanar waveguide-fed multiple-input multiple-output antenna array based on the left-handed wire loaded spiral resonators (SR) is presented. The proposed antenna consists of a 2 × 2 wire SR with two symmetrical microstrip feed lines, each line exciting a 1 × 2 wire SR. Left-handed metamaterial unit cells are placed on its reverse side and arranged in a 2 × 3 array. A reflection coefficient of less than -16 dB and mutual coupling of less than -28 dB are achieved at 5.15 GHz WLAN band.

  19. Microfluidic geometric metering-based multi-reagent mixture generator for robust live cell screening array.

    Science.gov (United States)

    Wang, Han; Kim, Jeongyun; Jayaraman, Arul; Han, Arum

    2014-12-01

    Microfluidic live cell arrays with integrated concentration gradient or mixture generators have been utilized in screening cellular responses to various biomolecular cues. Microfluidic network-based gradient generators that can create concentration gradients by repeatedly splitting and mixing different solutions using networks of serpentine channels are commonly used. However, in this method the generation of concentration gradients relies on the continuous flow of sample solutions at optimized flow rates, which poses challenges in maintaining the pressure and flow stability throughout the entire assay period. Here we present a microfluidic live cell screening array with an on-demand multi-reagent mixture generator where the mixing ratios, thus generated concentrations, are hard-wired into the chip itself through a geometric metering method. This platform showed significantly improved robustness and repeatability in generating concentration gradients of fluorescent dyes (average coefficient of variance C.V. = 9 %) compared to the conventional network-based gradient generators (average C.V. = 21 %). In studying the concentration dependent effects of the environmental toxicant 3-methylcholanthrene (3MC) on the activation of cytochrome P450 1A1 (Cyp 1A1) enzyme in H4IIE rat hepatoma cells, statistical variation of the Cyp 1A1 response was significantly lower (C.V. = 5 %) when using the developed mixture generator compared to that using the conventional gradient generator (C.V. = 12 %). Reduction in reagent consumption by 12-times was also achieved. This robust, accurate, and scalable multi-reagent mixture generator integrated with a cell culture array as a live cell assay platform can be readily implemented into various screening applications where repeatability, robustness, and low reagent consumptions over long periods of assay time are of importance.

  20. Self-Assembled Two-Dimensional Array of Gold Nanoparticles with Different Size for the Sensing Application

    Science.gov (United States)

    Li, Wan-Chao; Park, Sang-Eun; Kim, Jongsung; Lee, Sang-Wha

    2009-06-01

    Self-assembled two-dimensional array of gold nanoparticles (GNPs) on the glass substrate was systematically investigated in terms of glass cleaning, K2CO3 addition, GNP size, and pH of gold colloids. An ambient-air plasma treatment produced a highly-activated glass surface with the lowest air/water contact angles and K2CO3 addition is very effective to preserve the optical properties of gold nanoparticles for a long time. Small GNPs (≤40 nm) was uniformly arrayed on the amine-functionalized glass through the optimization process of electrostatic attractions between positively-charged glass and negatively-charged gold nanoparticles. For large GNPs (≥50 nm) that resulted in discrete (or loosely-packed) array on the glass substrate, pH adjustment of gold colloids (from pH 11 to 9) produced more densely-packed array of GNPs with less void areas, probably due to the reduction of electrostatic repulsion forces between large gold nanoparticles.

  1. Micro-structured electrode arrays : high-frequency discharges at atmospheric pressure—characterization and new applications

    NARCIS (Netherlands)

    Baars-Hibbe, Lutz; Schrader, Christian; Sichler, Philipp; Cordes, Thorben; Gericke, Karl-Heinz; Büttgenbach, Stephanus; Draeger, Siegfried

    2004-01-01

    Micro-structured electrode (MSE) arrays allow to generate large-area uniform glow discharges over a wide pressure range up to atmospheric pressure. The electrode dimensions in the µm-range realized by means of modern micro-machining and galvanic techniques are small enough to generate sufficiently h

  2. Application of affymetrix array and massively parallel signature sequencing for identification of genes involved in prostate cancer progression

    Directory of Open Access Journals (Sweden)

    Eichner Lillian J

    2005-07-01

    Full Text Available Abstract Background Affymetrix GeneChip Array and Massively Parallel Signature Sequencing (MPSS are two high throughput methodologies used to profile transcriptomes. Each method has certain strengths and weaknesses; however, no comparison has been made between the data derived from Affymetrix arrays and MPSS. In this study, two lineage-related prostate cancer cell lines, LNCaP and C4-2, were used for transcriptome analysis with the aim of identifying genes associated with prostate cancer progression. Methods Affymetrix GeneChip array and MPSS analyses were performed. Data was analyzed with GeneSpring 6.2 and in-house perl scripts. Expression array results were verified with RT-PCR. Results Comparison of the data revealed that both technologies detected genes the other did not. In LNCaP, 3,180 genes were only detected by Affymetrix and 1,169 genes were only detected by MPSS. Similarly, in C4-2, 4,121 genes were only detected by Affymetrix and 1,014 genes were only detected by MPSS. Analysis of the combined transcriptomes identified 66 genes unique to LNCaP cells and 33 genes unique to C4-2 cells. Expression analysis of these genes in prostate cancer specimens showed CA1 to be highly expressed in bone metastasis but not expressed in primary tumor and EPHA7 to be expressed in normal prostate and primary tumor but not bone metastasis. Conclusion Our data indicates that transcriptome profiling with a single methodology will not fully assess the expression of all genes in a cell line. A combination of transcription profiling technologies such as DNA array and MPSS provides a more robust means to assess the expression profile of an RNA sample. Finally, genes that were differentially expressed in cell lines were also differentially expressed in primary prostate cancer and its metastases.

  3. 频控阵雷达:概念、原理与应用%Frequency Diverse Array Radar:Concept, Principle and Application

    Institute of Scientific and Technical Information of China (English)

    王文钦; 邵怀宗; 陈慧

    2016-01-01

    频控阵雷达是近年来提出的一种新体制阵列雷达技术,它能够形成具有距离依赖性的发射波束,克服了传统相控阵雷达不能有效控制发射波束的距离指向问题,并具有很多独特的应用优势。该文系统地介绍频控阵雷达的概念、原理和应用特点,全面梳理国内外关于频控阵雷达技术的研究文献,系统性地总结归纳频控阵概念、基本原理及其雷达应用特点等几个方面的研究现状,并分析频控阵雷达未来的应用前景和亟待解决的关键技术问题。%Frequency Diverse Array (FDA) radar is a new radar technique proposed in recent years. FDA uses a small frequency increments across its array elements to provide a range-dependent transmit beampattern, which overcomes the disadvantages of a phased-array providing range-independent beampattern, and offers many promising advantages for radar applications. This paper introduces the concepts, principles and application characteristics of FDA radar, makes an overview of recent FDA radar literature, and discusses FDA radar promising applications, along with existing technical challenges.

  4. 相控阵超声检测技术应用%The Principle and Its Application of Phased Array Ultrasonic Inspection Technology

    Institute of Scientific and Technical Information of China (English)

    田安定

    2011-01-01

    Phased Array ultrasonic technology was applied widely in NDT. This technology was based on electronic delay control, and on the superposition and interference principle of ultrasonic wave, forming dynamic scanning beam, eventually forming a scanning image. It was better than conventional method on probability of detection. This paper focused on principles of phased array technology, equipment usage and calibration, introducing several classic applications of some fields using phased array technology.%相控阵超声技术在无损检测行业中已经得到广泛的应用,该技术根据电子延时控制,利用波的叠加和干涉原理,形成动态扫查声束,最终合成扫查图像,比传统超声波探伤具有时更高的缺陷检出率.围绕相控阵技术原理、设备的使用和校准,介绍了相控阵技术在一些领域的经典应用.

  5. Controllable hydrothermal synthesis of rutile TiO{sub 2} hollow nanorod arrays on TiCl{sub 4} pretreated Ti foil for DSSC application

    Energy Technology Data Exchange (ETDEWEB)

    Xi, Min [Key Laboratory of Renewable Energy, Guangzhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640 (China); Zhang, Yulan; Long, Lizhen [Key Laboratory of Renewable Energy, Guangzhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640 (China); University of Chinese Academy of Sciences, Beijing 100049 (China); Li, Xinjun, E-mail: lixj@ms.giec.ac.cn [Key Laboratory of Renewable Energy, Guangzhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640 (China)

    2014-11-15

    Rutile TiO{sub 2} nanorod arrays (TNRs) were achieved by hydrothermal process on TiCl{sub 4} pretreated Ti foil. Subsequently, TNRs were hydrothermally etched in HCl solution to form hollow TiO{sub 2} nanorod arrays (H-TNRs). The TiCl{sub 4} pretreatment plays key roles in enhancement of Ti foil corrosion resistance ability and crystal nucleation introduction for TNRs growth. TNRs with desired morphology can be obtained by controlling TiCl{sub 4} concentration and the amount of tetrabutyl titanate (TTB) accordingly. TNRs with the length of ∼1.5 μm and diameter of ∼200 nm, obtained on 0.15 M TiCl{sub 4} pretreated Ti foil with 0.6 mL TTB, exhibits relatively higher photocurrent. The increased pore volume of the H-TNRs has contributed to the increased surface area which is benefit for Dye-Sensitized Solar Cells (DSSC) application. And the 180 °C-H-TNRs photoanode obtained from the 0.15-TiCl{sub 4}-TNRs sample demonstrated 128.9% enhancement of photoelectric efficiency of DSSC compared to that of the original TNR photoanode. - Graphical abstract: Rutile hollow TiO{sub 2} nanorod array photoanode obtained from original TiO{sub 2} nanorod array photoanode by hydrothermal etching demonstrates enhanced photoelectric efficiency of DSSC. - Highlights: • TiO{sub 2} nanorods are prepared via hydrothermal process on TiCl{sub 4}-pretreated Ti foil. • Hollow TiO{sub 2} nanorods are obtained by hydrothermal etching of TiO{sub 2} nanorods. • TiCl{sub 4} pretreatment plays a key role in protecting Ti foil from chemical corrosion. • Hollow TiO{sub 2} nanorods photoanode shows enhanced photoelectric efficiency for DSSC.

  6. Multi-functional CuO nanowire/TiO2 nanotube arrays photoelectrode synthesis, characterization, photocatalysis and SERS applications.

    Science.gov (United States)

    Sheng, Pengtao; Li, Weili; Du, Pengwei; Cao, Kesheng; Cai, Qingyun

    2016-11-01

    Vertically aligned single crystalline CuO nanowire arrays (NWs) grown directly on TiO2 nanotube arrays (NTAs) supporting by Ti foil have been successfully fabricated using facile thermal oxidation of Cu nanocrystals in static air. CuO NWs growth behavior dependent on parent Cu nanocrystals sizes has been well investigated. Mass transport channel of Cu ions in horizontal and vertical for supporting CuO NWs diameter and length changes has been confirmed through a novel step-by-step surface diffusion process. CuO NWs, nano-mushrooms and nanosheets can be easily obtained by varying growth conditions. After photocatalytic synthesis of snow-like Ag nanocrystals upon CuO NWs/TiO2 NTAs, the hybrid photoelectrode exhibits superior catalytic property and detection sensitivity, which can clean themselves by photocatalytic degradation of RhB molecules adsorbed to the substrate under irradiation using surface enhanced Raman scattering (SERS) detection, a recycling can been achieved.

  7. Novel CCII-based Field Programmable Analog Array and its Application to a Sixth-Order Butterworth LPF

    OpenAIRE

    S. A. Mahmoud; Soliman, E. A.

    2013-01-01

    In this paper, a field programmable analog array (FPAA) is proposed. The proposed FPAA consists of seven configurable analog blocks (CABs) arranged in a hexagonal lattice such that the CABs are directly connected to each other. This structure improves the overall frequency response of the chip by decreasing the parasitic capacitances in the signal path. The CABS of the FPAA is based on a novel fully differential digitally programmable current conveyor (DPCCII). The programmability of the DPCC...

  8. Characterization and applications of VLF/LF source locations from lightning using the Huntsville Alabama Marx Meter Array

    Science.gov (United States)

    Bitzer, Phillip M.; Christian, Hugh J.; Stewart, Mike; Burchfield, Jeff; Podgorny, Scott; Corredor, David; Hall, John; Kuznetsov, Evgeny; Franklin, Veronica

    2013-04-01

    Arrays that detect and locate the four-dimensional spacetime positions of radiation sources from lightning have largely utilized sensors sensitive to the very high frequency (VHF) regime with ˜ 15 km baselines or very low frequency/low frequency (VLF/LF) regime with ˜ 100 km baselines. This paper details initial results from the newly developed Huntsville Alabama Marx Meter Array (HAMMA), consisting of Marx meters (electric field change meters) sensitive to a frequency band ˜ 1 Hz to 400 kHz. The arrival time of HAMMA waveforms due to radiation sources from lightning are used to determine the spacetime position of these sources. The locations are compared with two well-documented and operational arrays, the National Lightning Detection Network (NLDN) and the North Alabama Lightning Mapping Array (NALMA). The standard deviation of the difference between HAMMA and NLDN locations of return strokes is 305 and 266 m in x and y, respectively, while the standard deviation of the difference between HAMMA and NALMA sources is 237, 226, and 688 m in x, y and z, respectively. We further show that NLDN intracloud locations differ in horizontal distance from the corresponding HAMMA locations by a median value of 479 m. In addition, we use HAMMA source locations to map several lightning flashes in the VLF/LF and show HAMMA sources largely map out the same electrical extent as VHF sources and provide unique insights to the properties of the discharges occurring. Finally, we show that VLF/LF sources can determine the leader polarity in several example flashes but not necessarily whether a flash comes to ground. Copyright 2013 American Geophysical Union. All rights reserved.

  9. Hierarchical-Multiplex DNA Patterns Mediated by Polymer Brush Nanocone Arrays That Possess Potential Application for Specific DNA Sensing.

    Science.gov (United States)

    Liu, Wendong; Liu, Xueyao; Ge, Peng; Fang, Liping; Xiang, Siyuan; Zhao, Xiaohuan; Shen, Huaizhong; Yang, Bai

    2015-11-11

    This paper provides a facile and cost-efficient method to prepare single-strand DNA (ssDNA) nanocone arrays and hierarchical DNA patterns that were mediated by poly(2-hydroxyethyl methacrylate) (PHEMA) brush. The PHEMA brush nanocone arrays with different morphology and period were fabricated via colloidal lithography. The hierarchical structure was prepared through the combination of colloidal lithography and traditional photolithography. The DNA patterns were easily achieved via grafting the amino group modified ssDNA onto the side chain of polymer brush, and the anchored DNA maintained their reactivity. The as-prepared ssDNA nanocone arrays can be applied for target DNA sensing with the detection limit reaching 1.65 nM. Besides, with the help of introducing microfluidic ideology, the hierarchical-multiplex DNA patterns on the same substrate could be easily achieved with each kind of pattern possessing one kind of ssDNA, which are promising surfaces for the preparation of rapid, visible, and multiplex DNA sensors.

  10. Analysis of O-glycans as 9-fluorenylmethyl derivatives and its application to the studies on glycan array.

    Science.gov (United States)

    Yamada, Keita; Hirabayashi, Jun; Kakehi, Kazuaki

    2013-03-19

    A method is proposed for the analysis of O-glycans as 9-fluorenylmethyl (Fmoc) derivatives. After releasing the O-glycans from the protein backbone in the presence of ammonia-based media, the glycosylamines thus formed are conveniently labeled with Fmoc-Cl and analyzed by HPLC and MALDI-TOF MS after easy purification. Fmoc labeled O-glycans showed 3.5 times higher sensitivities than those labeled with 2-aminobenzoic acid in fluorescent detection. Various types of O-glycans having sialic acids, fucose, and/or sulfate residues were successfully labeled with Fmoc and analyzed by HPLC and MALDI-TOF MS. The method was applied to the comprehensive analysis of O-glycans expressed on MKN45 cells (human gastric adenocarcinoma). In addition, Fmoc-derivatized O-glycans were easily converted to free hemiacetal or glycosylamine-form glycans that are available for fabrication of glycan array and neoglycoproteins. To demonstrate the availability of our methods, we fabricate the glycan array with Fmoc labeled glycans derived from mucin samples and cancer cells. The model studies using the glycan array showed clear interactions between immobilized glycans and some lectins.

  11. PREFACE: India-Japan Workshop on Biomolecular Electronics & Organic Nanotechnology for Environment Preservation

    Science.gov (United States)

    Onoda, Mitsuyoshi; Malhotra, Bansi D.

    2012-04-01

    The 'India-Japan Workshop on Biomolecular Electronics & Organic Nanotechnology for Environment Preservation' (IJWBME 2011) will be held on 7-10 December 2011 at EGRET Himeji, Himeji, Hyogo, Japan. This workshop was held for the first time on 17-19 December 2009 at NPL, New Delhi. Keeping in mind the importance of organic nanotechnology and biomolecular electronics for environmental preservation and their anticipated impact on the economics of both the developing and the developed world, IJWBME 2009 was jointly organized by the Department of Biological Functions, Graduate School of Life Sciences and Systems Engineering, the Kyushu Institute of Technology (KIT), Kitakyushu, Japan, and the Department of Science & Technology Centre on Biomolecular Electronics (DSTCBE), National Physical Laboratory (NPL). Much progress in the field of biomolecular electronics and organic nanotechnology for environmental preservation is expected for the 21st Century. Organic optoelectronic devices, such as organic electroluminescent devices, organic thin-film transistors, organic sensors, biological systems and so on have especially attracted much attention. The main purpose of this workshop is to provide an opportunity for researchers interested in biomolecular electronics and organic nanotechnology for environmental preservation, to come together in an informal and friendly atmosphere and exchange technical knowledge and experience. We are sure that this workshop will be very useful and fruitful for all participants in summarizing the recent progress in biomolecular electronics and organic nanotechnology for environmental preservation and preparing new ground for the next generation. Many papers have been submitted from India and Japan and more than 30 papers have been accepted for presentation. The main topics of interest are as follows: Bioelectronics Biomolecular Electronics Fabrication Techniques Self-assembled Monolayers Nano-sensors Environmental Monitoring Organic Devices

  12. Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks

    DEFF Research Database (Denmark)

    Soberano de Oliveira, Ana Paula; Patil, Kiran Raosaheb; Nielsen, Jens

    2008-01-01

    Background: Uncovering the operating principles underlying cellular processes by using 'omics' data is often a difficult task due to the high-dimensionality of the solution space that spans all interactions among the bio-molecules under consideration. A rational way to overcome this problem...... is to use the topology of bio-molecular interaction networks in order to constrain the solution space. Such approaches systematically integrate the existing biological knowledge with the 'omics' data. Results: Here we introduce a hypothesis-driven method that integrates bio-molecular network topology...... with transcriptome data, thereby allowing the identification of key biological features (Reporter Features) around which transcriptional changes are significantly concentrated. We have combined transcriptome data with different biological networks in order to identify Reporter Gene Ontologies, Reporter Transcription...

  13. Biochemical filter with sigmoidal response: increasing the complexity of biomolecular logic.

    Science.gov (United States)

    Privman, Vladimir; Halámek, Jan; Arugula, Mary A; Melnikov, Dmitriy; Bocharova, Vera; Katz, Evgeny

    2010-11-11

    The first realization of a designed, rather than natural, biochemical filter process is reported and analyzed as a promising network component for increasing the complexity of biomolecular logic systems. Key challenge in biochemical logic research has been achieving scalability for complex network designs. Various logic gates have been realized, but a "toolbox" of analog elements for interconnectivity and signal processing has remained elusive. Filters are important as network elements that allow control of noise in signal transmission and conversion. We report a versatile biochemical filtering mechanism designed to have sigmoidal response in combination with signal-conversion process. Horseradish peroxidase-catalyzed oxidation of chromogenic electron donor by H(2)O(2) was altered by adding ascorbate, allowing to selectively suppress the output signal, modifying the response from convex to sigmoidal. A kinetic model was developed for evaluation of the quality of filtering. The results offer improved capabilities for design of scalable biomolecular information processing systems.

  14. Constructing Bio-molecular Databases on a DNA-based Computer

    CERN Document Server

    Chang, Weng-Long; Ho,; Guo, Minyi

    2007-01-01

    Codd [Codd 1970] wrote the first paper in which the model of a relational database was proposed. Adleman [Adleman 1994] wrote the first paper in which DNA strands in a test tube were used to solve an instance of the Hamiltonian path problem. From [Adleman 1994], it is obviously indicated that for storing information in molecules of DNA allows for an information density of approximately 1 bit per cubic nm (nanometer) and a dramatic improvement over existing storage media such as video tape which store information at a density of approximately 1 bit per 1012 cubic nanometers. This paper demonstrates that biological operations can be applied to construct bio-molecular databases where data records in relational tables are encoded as DNA strands. In order to achieve the goal, DNA algorithms are proposed to perform eight operations of relational algebra (calculus) on bio-molecular relational databases, which include Cartesian product, union, set difference, selection, projection, intersection, join and division. Fu...

  15. Out-of-equilibrium biomolecular interactions monitored by picosecond fluorescence in microfluidic droplets.

    Science.gov (United States)

    Maillot, Sacha; Carvalho, Alain; Vola, Jean-Pierre; Boudier, Christian; Mély, Yves; Haacke, Stefan; Léonard, Jérémie

    2014-05-21

    We developed a new experimental approach combining Time-Resolved Fluorescence (TRF) spectroscopy and Droplet Microfluidics (DμF) to investigate the relaxation dynamics of structurally heterogeneous biomolecular systems. Here DμF was used to produce with minimal material consumption an out-of-equilibrium, fluorescently labeled biomolecular complex by rapid mixing within the droplets. TRF detection was implemented with a streak camera to monitor the time evolution of the structural heterogeneity of the complex along its relaxation towards equilibrium while it propagates inside the microfluidic channel. The approach was validated by investigating the fluorescence decay kinetics of a model interacting system of bovine serum albumin and Patent Blue V. Fluorescence decay kinetics are acquired with very good signal-to-noise ratio and allow for global, multicomponent fluorescence decay analysis, evidencing heterogeneous structural relaxation over several 100 ms.

  16. Charge transport through biomolecular wires in a solvent: bridging molecular dynamics and model Hamiltonian approaches.

    Science.gov (United States)

    Gutiérrez, R; Caetano, R A; Woiczikowski, B P; Kubar, T; Elstner, M; Cuniberti, G

    2009-05-22

    We present a hybrid method based on a combination of classical molecular dynamics simulations, quantum-chemical calculations, and a model Hamiltonian approach to describe charge transport through biomolecular wires with variable lengths in presence of a solvent. The core of our approach consists in a mapping of the biomolecular electronic structure, as obtained from density-functional based tight-binding calculations of molecular structures along molecular dynamics trajectories, onto a low-dimensional model Hamiltonian including the coupling to a dissipative bosonic environment. The latter encodes fluctuation effects arising from the solvent and from the molecular conformational dynamics. We apply this approach to the case of pG-pC and pA-pT DNA oligomers as paradigmatic cases and show that the DNA conformational fluctuations are essential in determining and supporting charge transport.

  17. Conformation of bovine submaxillary mucin layers on hydrophobic surface as studied by biomolecular probes

    DEFF Research Database (Denmark)

    Pakkanen, Kirsi I.; Madsen, Jan Busk; Lee, Seunghwan

    2015-01-01

    In the present study, the conformational changes of bovine submaxillary mucin (BSM) adsorbed on a hydrophobic surface (polystyrene (PS)) as a function of concentration in bulk solution (up to 2mg/mL) have been investigated with biomolecular probe-based approaches, including bicinchoninic acid (BCA...... solution. Adsorbed masses of BSM onto hydrophobic surface, as probe by BCA, showed a continuously increasing trend up to 2mg/mL. But, the signals from EIA and ELLA, which probe the concentration of available unglycosylatedC-terminals and the central glycosylated regions, respectively, showed complicated...... non-linear responses with increasing surface concentration. The results from this study support the conventional amphiphilic, triblock model of BSM in the adsorption onto hydrophobic surface from aqueous solution.The biomolecular probe-based approaches employed in this study, however, provided further...

  18. Parity Violation in Chiral Molecules: From Theory towards Spectroscopic Experiment and the Evolution of Biomolecular Homochirality

    CERN Document Server

    CERN. Geneva

    2016-01-01

    The observation of biomolecular homochirality can be considered as a quasi-fossil of the evolution of life [1], the interpretation of which has been an open question for more than a century, with numerous related hypotheses, but no definitive answers. We shall briefly discuss the current status and the relation to the other two questions. The discovery of parity violation led to important developm...

  19. Accelerated search for biomolecular network models to interpret high-throughput experimental data

    Directory of Open Access Journals (Sweden)

    Sokhansanj Bahrad A

    2007-07-01

    Full Text Available Abstract Background The functions of human cells are carried out by biomolecular networks, which include proteins, genes, and regulatory sites within DNA that encode and control protein expression. Models of biomolecular network structure and dynamics can be inferred from high-throughput measurements of gene and protein expression. We build on our previously developed fuzzy logic method for bridging quantitative and qualitative biological data to address the challenges of noisy, low resolution high-throughput measurements, i.e., from gene expression microarrays. We employ an evolutionary search algorithm to accelerate the search for hypothetical fuzzy biomolecular network models consistent with a biological data set. We also develop a method to estimate the probability of a potential network model fitting a set of data by chance. The resulting metric provides an estimate of both model quality and dataset quality, identifying data that are too noisy to identify meaningful correlations between the measured variables. Results Optimal parameters for the evolutionary search were identified based on artificial data, and the algorithm showed scalable and consistent performance for as many as 150 variables. The method was tested on previously published human cell cycle gene expression microarray data sets. The evolutionary search method was found to converge to the results of exhaustive search. The randomized evolutionary search was able to converge on a set of similar best-fitting network models on different training data sets after 30 generations running 30 models per generation. Consistent results were found regardless of which of the published data sets were used to train or verify the quantitative predictions of the best-fitting models for cell cycle gene dynamics. Conclusion Our results demonstrate the capability of scalable evolutionary search for fuzzy network models to address the problem of inferring models based on complex, noisy biomolecular

  20. Colloid-in-Liquid Crystal Gels that Respond to Biomolecular Interactions

    OpenAIRE

    Agarwal, Ankit; Sidiq, Sumyra; Setia, Shilpa; Bukusoglu, Emre; de Pablo, Juan J.; Pal, Santanu Kumar; Abbott, Nicholas L.

    2013-01-01

    This paper advances the design of stimuli-responsive materials based on colloidal particles dispersed in liquid crystals (LCs). Specifically, we report that thin films of colloid-in-liquid crystal (CLC) gels can undergo easily visualized ordering transitions in response to reversible and irreversible (enzymatic) biomolecular interactions occurring at aqueous interfaces of the gels. In particular, we demonstrate that LC ordering transitions can propagate across the entire thickness of the gels...