WorldWideScience

Sample records for biomedical optical imaging

  1. Biomedical optical imaging

    CERN Document Server

    Fujimoto, James G

    2009-01-01

    Biomedical optical imaging is a rapidly emerging research area with widespread fundamental research and clinical applications. This book gives an overview of biomedical optical imaging with contributions from leading international research groups who have pioneered many of these techniques and applications. A unique research field spanning the microscopic to the macroscopic, biomedical optical imaging allows both structural and functional imaging. Techniques such as confocal and multiphoton microscopy provide cellular level resolution imaging in biological systems. The integration of this tech

  2. Computational optical biomedical spectroscopy and imaging

    CERN Document Server

    Musa, Sarhan M

    2015-01-01

    Applications of Vibrational Spectroscopic Imaging in Personal Care Studies; Guojin Zhang, Roger L. McMullen, Richard Mendelsohn, and Osama M. MusaFluorescence Bioimaging with Applications to Chemistry; Ufana Riaz and S.M. AshrafNew Trends in Immunohistochemical, Genome, and Metabolomics Imaging; G. Livanos, Aditi Deshpande, C. Narayan, Ying Na, T. Quang, T. Farrahi, R. Koglin, Suman Shrestha, M. Zervakis, and George C. GiakosDeveloping a Comprehensive Taxonomy for Human Cell Types; Richard Conroy and Vinay PaiFunctional Near-Infrared S

  3. Proceedings of the international society for optical engineering biomedical image processing 2

    Energy Technology Data Exchange (ETDEWEB)

    Bovik, A.G.; Howard, V.

    1991-01-01

    This book contains the proceedings of biomedical image processing. Topics covered include: Filtering and reconstruction of biomedical images; analysis, classification and recognition of biomedical images; and 3-D microscopy.

  4. Optical Polarizationin Biomedical Applications

    CERN Document Server

    Tuchin, Valery V; Zimnyakov, Dmitry A

    2006-01-01

    Optical Polarization in Biomedical Applications introduces key developments in optical polarization methods for quantitative studies of tissues, while presenting the theory of polarization transfer in a random medium as a basis for the quantitative description of polarized light interaction with tissues. This theory uses the modified transfer equation for Stokes parameters and predicts the polarization structure of multiple scattered optical fields. The backscattering polarization matrices (Jones matrix and Mueller matrix) important for noninvasive medical diagnostic are introduced. The text also describes a number of diagnostic techniques such as CW polarization imaging and spectroscopy, polarization microscopy and cytometry. As a new tool for medical diagnosis, optical coherent polarization tomography is analyzed. The monograph also covers a range of biomedical applications, among them cataract and glaucoma diagnostics, glucose sensing, and the detection of bacteria.

  5. Handbook of biomedical optics

    CERN Document Server

    Boas, David A

    2011-01-01

    Biomedical optics holds tremendous promise to deliver effective, safe, non- or minimally invasive diagnostics and targeted, customizable therapeutics. Handbook of Biomedical Optics provides an in-depth treatment of the field, including coverage of applications for biomedical research, diagnosis, and therapy. It introduces the theory and fundamentals of each subject, ensuring accessibility to a wide multidisciplinary readership. It also offers a view of the state of the art and discusses advantages and disadvantages of various techniques.Organized into six sections, this handbook: Contains intr

  6. Biomedical signals, imaging, and informatics

    CERN Document Server

    Bronzino, Joseph D

    2014-01-01

    Known as the bible of biomedical engineering, The Biomedical Engineering Handbook, Fourth Edition, sets the standard against which all other references of this nature are measured. As such, it has served as a major resource for both skilled professionals and novices to biomedical engineering.Biomedical Signals, Imaging, and Informatics, the third volume of the handbook, presents material from respected scientists with diverse backgrounds in biosignal processing, medical imaging, infrared imaging, and medical informatics.More than three dozen specific topics are examined, including biomedical s

  7. Molecular Biomedical Imaging Laboratory (MBIL)

    Data.gov (United States)

    Federal Laboratory Consortium — The Molecular Biomedical Imaging Laboratory (MBIL) is adjacent-a nd has access-to the Department of Radiology and Imaging Sciences clinical imaging facilities. MBIL...

  8. Computational intelligence in biomedical imaging

    CERN Document Server

    2014-01-01

    This book provides a comprehensive overview of the state-of-the-art computational intelligence research and technologies in biomedical images with emphasis on biomedical decision making. Biomedical imaging offers useful information on patients’ medical conditions and clues to causes of their symptoms and diseases. Biomedical images, however, provide a large number of images which physicians must interpret. Therefore, computer aids are demanded and become indispensable in physicians’ decision making. This book discusses major technical advancements and research findings in the field of computational intelligence in biomedical imaging, for example, computational intelligence in computer-aided diagnosis for breast cancer, prostate cancer, and brain disease, in lung function analysis, and in radiation therapy. The book examines technologies and studies that have reached the practical level, and those technologies that are becoming available in clinical practices in hospitals rapidly such as computational inte...

  9. Examination of the variation of the optical diffusion properties in nanophosphor materials for use in biomedical imaging and instrumentation

    Science.gov (United States)

    Liaparinos, P.; Kandarakis, I.

    2015-06-01

    Granular phosphors are commonly used in several applications in biomedical imaging and instrumentation. The structural and optical properties of phosphor materials affect the optical signal transferred out and play a critical role in the quality of the final signal or image. In recent years, following developments in materials science and technology, several new methods have been successfully implemented for the preparation of nanosized phosphors. It is of interest to investigate whether nanophosphors could replace existing micro phosphors for next generation high-performance displays and imaging devices. The purpose of the present study was to investigate the variation of the optical parameters (e.g. light extinction coefficient mext, probability of light absorption p, light anisotropy factor g) in the sub-micron and nano scale under the variability of light wavelength (400-700 nm) and refractive index (e.g., two limiting values were used 1.4 and 2.0). For the case of low refractive index (1.4), by increasing the grain diameter: (a) the light extinction increases, (b) the light absorption probability decreases and (c) the anisotropy factor increases in the whole range or gran sizes (2-1000 nm). However, for the high value of the refractive index (2.0), the light extinction coefficient was found to increase up to a maximum for grain diameter: (a) 200 nm (at 400 nm light wavelength) and (b) 600 nm (at 700 nm light wavelength). Finally, at 400 nm grain diameter, the probability of light absorption was found to decrease down to a minimum while the anisotropy factor was found to increase up to maximum for all light wavelengths considered.

  10. Advanced biomedical image analysis

    CERN Document Server

    Haidekker, Mark A

    2010-01-01

    "This book covers the four major areas of image processing: Image enhancement and restoration, image segmentation, image quantification and classification, and image visualization. Image registration, storage, and compression are also covered. The text focuses on recently developed image processing and analysis operators and covers topical research"--Provided by publisher.

  11. Biomedical Imaging Principles and Applications

    CERN Document Server

    Salzer, Reiner

    2012-01-01

    This book presents and describes imaging technologies that can be used to study chemical processes and structural interactions in dynamic systems, principally in biomedical systems. The imaging technologies, largely biomedical imaging technologies such as MRT, Fluorescence mapping, raman mapping, nanoESCA, and CARS microscopy, have been selected according to their application range and to the chemical information content of their data. These technologies allow for the analysis and evaluation of delicate biological samples, which must not be disturbed during the profess. Ultimately, this may me

  12. Mathematical modeling in biomedical imaging

    CERN Document Server

    2012-01-01

    This volume reports on recent mathematical and computational advances in optical, ultrasound, and opto-acoustic tomographies. It outlines the state-of-the-art and future directions in these fields and provides readers with the most recently developed mathematical and computational tools.  It is particularly suitable for researchers and graduate students in applied mathematics and biomedical engineering.

  13. Interferometric microstructured polymer optical fiber ultrasound sensor for optoacoustic endoscopic imaging in biomedical applications

    DEFF Research Database (Denmark)

    Gallego, Daniel; Sáez-Rodríguez, David; Webb, David;

    2014-01-01

    to conventional piezoelectric transducers. These kind of sensors, made of biocompatible polymers, are good candidates for the sensing element in an optoacoustic endoscope because of its high sensitivity, its shape and its non-brittle and non-electric nature. The acoustic sensitivity of the intrinsic fiber optic...

  14. Biomedical Imaging and Sensing using Flatbed Scanners

    OpenAIRE

    Göröcs, Zoltán; Ozcan, Aydogan

    2014-01-01

    In this Review, we provide an overview of flatbed scanner based biomedical imaging and sensing techniques. The extremely large imaging field-of-view (e.g., ~600–700 cm2) of these devices coupled with their cost-effectiveness provide unique opportunities for digital imaging of samples that are too large for regular optical microscopes, and for collection of large amounts of statistical data in various automated imaging or sensing tasks. Here we give a short introduction to the basic features o...

  15. Mathematical modeling in biomedical imaging

    CERN Document Server

    2009-01-01

    This volume gives an introduction to a fascinating research area to applied mathematicians. It is devoted to providing the exposition of promising analytical and numerical techniques for solving challenging biomedical imaging problems, which trigger the investigation of interesting issues in various branches of mathematics.

  16. Biomedical Image Processing

    CERN Document Server

    Deserno, Thomas Martin

    2011-01-01

    In modern medicine, imaging is the most effective tool for diagnostics, treatment planning and therapy. Almost all modalities have went to directly digital acquisition techniques and processing of this image data have become an important option for health care in future. This book is written by a team of internationally recognized experts from all over the world. It provides a brief but complete overview on medical image processing and analysis highlighting recent advances that have been made in academics. Color figures are used extensively to illustrate the methods and help the reader to understand the complex topics.

  17. Biomedical signal and image processing

    CERN Document Server

    Najarian, Kayvan

    2012-01-01

    INTRODUCTION TO DIGITAL SIGNAL AND IMAGE PROCESSINGSignals and Biomedical Signal ProcessingIntroduction and OverviewWhat is a ""Signal""?Analog, Discrete, and Digital SignalsProcessing and Transformation of SignalsSignal Processing for Feature ExtractionSome Characteristics of Digital ImagesSummaryProblemsFourier TransformIntroduction and OverviewOne-Dimensional Continuous Fourier TransformSampling and NYQUIST RateOne-Dimensional Discrete Fourier TransformTwo-Dimensional Discrete Fourier TransformFilter DesignSummaryProblemsImage Filtering, Enhancement, and RestorationIntroduction and Overview

  18. Full-Field and Single-Shot Full-Field Optical Coherence Tomography: A Novel Technique for Biomedical Imaging Applications

    OpenAIRE

    Hrebesh Molly Subhash

    2012-01-01

    Since its introduction, optical coherence tomography (OCT) technology has advanced dramatically in various field of both clinical and fundamental research. Full-field and Single-shot full-field OCT (FF-OCT and SS-FF-OCT) are alternative OCT concepts, which aims to improve the image acquisition speed and to simplify the optical setup of conventional point-scan OCT by realizing direct line field or full-field sample imaging onto an array or line detector such as CCD or CMOS camera. FF-OCT and ...

  19. Optical nanoparticles: synthesis and biomedical application

    Science.gov (United States)

    Nhung Tran, Hong; Nghiem, Thi Ha Lien; Thuy Duong Vu, Thi; Chu, Viet Ha; Huan Le, Quang; Nhung Hoang, Thi My; Thanh Nguyen, Lai; Pham, Duc Minh; Thuan Tong, Kim; Hoa Do, Quang; Vu, Duong; Nghia Nguyen, Trong; Tan Pham, Minh; Nguyen Duong, Cao; Thuy Tran, Thanh; Son Vu, Van; Thuy Nguyen, Thi; Nguyen, Thi Bich Ngoc; Tran, Anh Duc; Thuong Trinh, Thi; Nguyen, Thi Thai An

    2015-01-01

    This paper presents a summary of our results on studies of synthesis and biomedical application of optical nanoparticles. Gold, dye-doped silica based and core-shell multifunctional multilayer (SiO2/Au, Fe3O4/SiO2, Fe3O4/SiO2/Au) water-monodispersed nanoparticles were synthesized by chemical route and surface modified with proteins and biocompatible chemical reagents. The particles were conjugated with antibody or aptamer for specific detecting and imaging bacteria and cancer cells. The photothermal effects of gold nanoshells (SiO2/Au and Fe3O4/SiO2/Au) on cells and tissues were investigated. The nano silver substrates were developed for surface enhanced Raman scattering (SERS) spectroscopy to detect melamine.

  20. Biomedical image understanding methods and applications

    CERN Document Server

    Lim, Joo-Hwee; Xiong, Wei

    2015-01-01

    A comprehensive guide to understanding and interpreting digital images in medical and functional applications Biomedical Image Understanding focuses on image understanding and semantic interpretation, with clear introductions to related concepts, in-depth theoretical analysis, and detailed descriptions of important biomedical applications. It covers image processing, image filtering, enhancement, de-noising, restoration, and reconstruction; image segmentation and feature extraction; registration; clustering, pattern classification, and data fusion. With contributions from ex

  1. Magnetic Resonance Imaging in Biomedical Engineering

    Science.gov (United States)

    Kaśpar, Jan; Hána, Karel; Smrčka, Pavel; Brada, Jiří; Beneš, Jiří; Šunka, Pavel

    2007-11-01

    The basic principles of magnetic resonance imaging covering physical principles and basic imaging techniques will be presented as a strong tool in biomedical engineering. Several applications of MRI in biomedical research practiced at the MRI laboratory of the FBMI CTU including other laboratory instruments and activities are introduced.

  2. Computer vision for biomedical image applications. Proceedings

    International Nuclear Information System (INIS)

    This book constitutes the refereed proceedings of the First International Workshop on Computer Vision for Biomedical Image Applications: Current Techniques and Future Trends, CVBIA 2005, held in Beijing, China, in October 2005 within the scope of ICCV 20. (orig.)

  3. Metrological reliability of optical coherence tomography in biomedical applications

    International Nuclear Information System (INIS)

    Optical coherence tomography (OCT) has been proving to be an efficient diagnostics technique for imaging in vivo tissues, an optical biopsy with important perspectives as a diagnostic tool for quantitative characterization of tissue structures. Despite its established clinical use, there is no international standard to address the specific requirements for basic safety and essential performance of OCT devices for biomedical imaging. The present work studies the parameters necessary for conformity assessment of optoelectronics equipment used in biomedical applications like Laser, Intense Pulsed Light (IPL), and OCT, targeting to identify the potential requirements to be considered in the case of a future development of a particular standard for OCT equipment. In addition to some of the particular requirements standards for laser and IPL, also applicable for metrological reliability analysis of OCT equipment, specific parameters for OCT's evaluation have been identified, considering its biomedical application. For each parameter identified, its information on the accompanying documents and/or its measurement has been recommended. Among the parameters for which the measurement requirement was recommended, including the uncertainty evaluation, the following are highlighted: optical radiation output, axial and transverse resolution, pulse duration and interval, and beam divergence

  4. Coherent fiber supercontinuum laser for nonlinear biomedical imaging

    DEFF Research Database (Denmark)

    Tu, Haohua; Liu, Yuan; Liu, Xiaomin;

    2012-01-01

    Nonlinear biomedical imaging has not benefited from the well-known techniques of fiber supercontinuum generation for reasons such as poor coherence (or high noise), insufficient controllability, low spectral power intensity, and inadequate portability. Fortunately, a few techniques involving...... nonlinear fiber optics and femtosecond fiber laser development have emerged to overcome these critical limitations. These techniques pave the way for conducting point-of-care nonlinear biomedical imaging by a low-maintenance cost-effective coherent fiber supercontinuum laser, which covers a broad emission...... wavelength of 350-1700 nm. A prototype of this laser has been demonstrated in label-free multimodal nonlinear imaging of cell and tissue samples.© (2012) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only....

  5. University of Vermont Center for Biomedical Imaging

    Energy Technology Data Exchange (ETDEWEB)

    Bernstein, Dr. Ira [University of Vermont and State Agricultural College

    2013-08-02

    This grant was awarded in support of Phase 2 of the University of Vermont Center for Biomedical Imaging. Phase 2 outlined several specific aims including: The development of expertise in MRI and fMRI imaging and their applications The acquisition of peer reviewed extramural funding in support of the Center The development of a Core Imaging Advisory Board, fee structure and protocol review and approval process.

  6. Optical Waveguide Sensing and Imaging

    CERN Document Server

    Bock, Wojtek J; Tanev, Stoyan

    2008-01-01

    The book explores various aspects of existing and emerging fiber and waveguide optics sensing and imaging technologies including recent advances in nanobiophotonics. The focus is both on fundamental and applied research as well as on applications in civil engineering, biomedical sciences, environment, security and defence. The main goal of the multi-disciplinarry team of Editors was to provide an useful reference of state-of-the-art overviews covering a variety of complementary topics on the interface of engineering and biomedical sciences.

  7. Envisioning the Future (Biomedical Imaging)

    Science.gov (United States)

    ... the beginning, I have sought to bring to biology rigorous quantitative techniques at all levels of imaging, whether trying to diagnose disease in ... today is to understand that the complexity of biology is much greater than we ... at the local level. That is why imaging has become so important. ...

  8. Biomedical Applications of Terahertz Spectroscopy and Imaging.

    Science.gov (United States)

    Yang, Xiang; Zhao, Xiang; Yang, Ke; Liu, Yueping; Liu, Yu; Fu, Weiling; Luo, Yang

    2016-10-01

    Terahertz (THz=10(12)Hz) radiation has attracted wide attention for its unprecedented sensing ability and its noninvasive and nonionizing properties. Tremendous strides in THz instrumentation have prompted impressive breakthroughs in THz biomedical research. Here, we review the current state of THz spectroscopy and imaging in various biomedical applications ranging from biomolecules, including DNA/RNA, amino acids/peptides, proteins, and carbohydrates, to cells and tissues. We also address the potential biological effects of THz radiation during its biological applications and propose future prospects for this cutting-edge technology.

  9. Analyser-based x-ray imaging for biomedical research

    International Nuclear Information System (INIS)

    Analyser-based imaging (ABI) is one of the several phase-contrast x-ray imaging techniques being pursued at synchrotron radiation facilities. With advancements in compact source technology, there is a possibility that ABI will become a clinical imaging modality. This paper presents the history of ABI as it has developed from its laboratory source to synchrotron imaging. The fundamental physics of phase-contrast imaging is presented both in a general sense and specifically for ABI. The technology is dependent on the use of perfect crystal monochromator optics. The theory of the x-ray optics is developed and presented in a way that will allow optimization of the imaging for specific biomedical systems. The advancement of analytical algorithms to produce separate images of the sample absorption, refraction angle map and small-angle x-ray scattering is detailed. Several detailed applications to biomedical imaging are presented to illustrate the broad range of systems and body sites studied preclinically to date: breast, cartilage and bone, soft tissue and organs. Ultimately, the application of ABI in clinical imaging will depend partly on the availability of compact sources with sufficient x-ray intensity comparable with that of the current synchrotron environment. (paper)

  10. Illumination Correction on Biomedical Images

    OpenAIRE

    Edoardo Ardizzone; Roberto Pirrone; Orazio Gambino; Salvatore Vitabile

    2014-01-01

    RF-Inhomogeneity Correction (aka bias) artifact is an important research field in Magnetic Resonance Imaging (MRI). Bias corrupts MR images altering their illumination even though they are acquired with the most recent scanners. Homomorphic Unsharp Masking (HUM) is a filtering technique aimed at correcting illumination inhomogeneity, but it produces a halo around the edges as a side effect. In this paper a novel correction scheme based on HUM is proposed to correct the artifact mentioned abov...

  11. Optical coherence tomography: technology and applications (biological and medical physics, biomedical engineering)

    CERN Document Server

    2013-01-01

    Optical coherence tomography (OCT) is the optical analog of ultrasound imaging and is emerging as a powerful imaging technique that enables non-invasive, in vivo, high resolution, cross-sectional imaging in biological tissue. This book introduces OCT technology and applications not only from an optical and technological viewpoint, but also from biomedical and clinical perspectives. The chapters are written by leading research groups, in a style comprehensible to a broad audience.

  12. BIG: a Grid Portal for Biomedical Data and Images

    Directory of Open Access Journals (Sweden)

    Giovanni Aloisio

    2004-06-01

    Full Text Available Modern management of biomedical systems involves the use of many distributed resources, such as high performance computational resources to analyze biomedical data, mass storage systems to store them, medical instruments (microscopes, tomographs, etc., advanced visualization and rendering tools. Grids offer the computational power, security and availability needed by such novel applications. This paper presents BIG (Biomedical Imaging Grid, a Web-based Grid portal for management of biomedical information (data and images in a distributed environment. BIG is an interactive environment that deals with complex user's requests, regarding the acquisition of biomedical data, the "processing" and "delivering" of biomedical images, using the power and security of Computational Grids.

  13. Modern technologies for retinal scanning and imaging: an introduction for the biomedical engineer.

    Science.gov (United States)

    Gramatikov, Boris I

    2014-01-01

    This review article is meant to help biomedical engineers and nonphysical scientists better understand the principles of, and the main trends in modern scanning and imaging modalities used in ophthalmology. It is intended to ease the communication between physicists, medical doctors and engineers, and hopefully encourage "classical" biomedical engineers to generate new ideas and to initiate projects in an area which has traditionally been dominated by optical physics. Most of the methods involved are applicable to other areas of biomedical optics and optoelectronics, such as microscopic imaging, spectroscopy, spectral imaging, opto-acoustic tomography, fluorescence imaging etc., all of which are with potential biomedical application. Although all described methods are novel and important, the emphasis of this review has been placed on three technologies introduced in the 1990's and still undergoing vigorous development: Confocal Scanning Laser Ophthalmoscopy, Optical Coherence Tomography, and polarization-sensitive retinal scanning.

  14. Introduction: Feature Issue on Optical Imaging and Spectroscopy

    OpenAIRE

    Hielscher, Andreas H.; Mycek, Mary-Ann; Perelman, Lev T.

    2010-01-01

    The editors introduce the Biomedical Optics Express feature issue, “Optical Imaging and Spectroscopy,” which was a technical area at the 2010 Optical Society of America (OSA), Biomedical Optics (BIOMED) Topical Meeting held on 11–14 April in Miami, Florida. The feature issue includes 23 contributions from conference attendees.

  15. Introduction: Advances in Optical Coherence Tomography, Photoacoustic Imaging, and Microscopy

    OpenAIRE

    Li, X; Beard, P.C.; Georgakoudi, I.

    2010-01-01

    The editors introduce the Biomedical Optics Express feature issue, “Advances in Optical Coherence Tomography, Photoacoustic Imaging, and Microscopy,” which combines three technical areas from the 2010 Optical Society of America (OSA), Biomedical Optics (BIOMED) Topical Meeting held on 11–14 April in Miami, Florida, and includes contributions from conference attendees.

  16. Photoacoustic lifetime imaging and its biomedical applications

    Science.gov (United States)

    Shao, Qi

    Even though oxygen plays a crucial role in body function and cancer biology, methods of measuring oxygen level in tissue are all limited. The current gold standard relies on an invasive electrode for only single-point reading at a time. The photoacoustic lifetime imaging (PALI) approach overcomes these major limitations by applying photoacoustic probing to oxygen-sensitive optical transient absorption. The capability of assessing oxygen distribution is demonstrated by imaging tumor hypoxia in a small animal model, and monitoring changes of tissue oxygen induced by external modulations. Proposed applications of this imaging technique includes imaging-guided photodynamic therapy (PDT) and activatable probes for molecular imaging.

  17. BIG: a Grid Portal for Biomedical Data and Images

    OpenAIRE

    Giovanni Aloisio; Maria Cristina Barba; Euro Blasi; Massimo Cafaro; Sandro Fiore; Maria Mirto

    2004-01-01

    Modern management of biomedical systems involves the use of many distributed resources, such as high performance computational resources to analyze biomedical data, mass storage systems to store them, medical instruments (microscopes, tomographs, etc.), advanced visualization and rendering tools. Grids offer the computational power, security and availability needed by such novel applications. This paper presents BIG (Biomedical Imaging Grid), a Web-based Grid portal for management of biomedic...

  18. The OPFOS microscopy family: High-resolution optical-sectioning of biomedical specimens

    CERN Document Server

    Buytaert, Jan A N; Adriaens, Dominique; Dirckx, Joris J J

    2011-01-01

    We report on the recently emerging (Laser) Light Sheet based Fluorescence Microscopy field (LSFM). The techniques used in this field allow to study and visualize biomedical objects non-destructively in high-resolution through virtual optical sectioning with sheets of laser light. Fluorescence originating in the cross section of the sheet and sample is recorded orthogonally with a camera. In this paper, the first implementation of LSFM to image biomedical tissue in three dimensions - Orthogonal-Plane Fluorescence Optical Sectioning microscopy (OPFOS) - is discussed. Since then many similar and derived methods have surfaced (SPIM, Ultramicroscopy, HR-OPFOS, mSPIM, DSLM, TSLIM...) which we all briefly discuss. All these optical sectioning methods create images showing histological detail. We illustrate the applicability of LSFM on several specimen types with application in biomedical and life sciences.

  19. Mining biomedical images towards valuable information retrieval in biomedical and life sciences.

    Science.gov (United States)

    Ahmed, Zeeshan; Zeeshan, Saman; Dandekar, Thomas

    2016-01-01

    Biomedical images are helpful sources for the scientists and practitioners in drawing significant hypotheses, exemplifying approaches and describing experimental results in published biomedical literature. In last decades, there has been an enormous increase in the amount of heterogeneous biomedical image production and publication, which results in a need for bioimaging platforms for feature extraction and analysis of text and content in biomedical images to take advantage in implementing effective information retrieval systems. In this review, we summarize technologies related to data mining of figures. We describe and compare the potential of different approaches in terms of their developmental aspects, used methodologies, produced results, achieved accuracies and limitations. Our comparative conclusions include current challenges for bioimaging software with selective image mining, embedded text extraction and processing of complex natural language queries. PMID:27538578

  20. Mining biomedical images towards valuable information retrieval in biomedical and life sciences.

    Science.gov (United States)

    Ahmed, Zeeshan; Zeeshan, Saman; Dandekar, Thomas

    2016-01-01

    Biomedical images are helpful sources for the scientists and practitioners in drawing significant hypotheses, exemplifying approaches and describing experimental results in published biomedical literature. In last decades, there has been an enormous increase in the amount of heterogeneous biomedical image production and publication, which results in a need for bioimaging platforms for feature extraction and analysis of text and content in biomedical images to take advantage in implementing effective information retrieval systems. In this review, we summarize technologies related to data mining of figures. We describe and compare the potential of different approaches in terms of their developmental aspects, used methodologies, produced results, achieved accuracies and limitations. Our comparative conclusions include current challenges for bioimaging software with selective image mining, embedded text extraction and processing of complex natural language queries.

  1. Mining biomedical images towards valuable information retrieval in biomedical and life sciences

    Science.gov (United States)

    Ahmed, Zeeshan; Zeeshan, Saman; Dandekar, Thomas

    2016-01-01

    Biomedical images are helpful sources for the scientists and practitioners in drawing significant hypotheses, exemplifying approaches and describing experimental results in published biomedical literature. In last decades, there has been an enormous increase in the amount of heterogeneous biomedical image production and publication, which results in a need for bioimaging platforms for feature extraction and analysis of text and content in biomedical images to take advantage in implementing effective information retrieval systems. In this review, we summarize technologies related to data mining of figures. We describe and compare the potential of different approaches in terms of their developmental aspects, used methodologies, produced results, achieved accuracies and limitations. Our comparative conclusions include current challenges for bioimaging software with selective image mining, embedded text extraction and processing of complex natural language queries. PMID:27538578

  2. 76 FR 53690 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-08-29

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Review Officer, National Institute of Biomedical Imaging and Bioengineering, National Institutes...

  3. 78 FR 76632 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-12-18

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Review Officer, National Institute of Biomedical Imaging and Bioengineering, 6707 Democracy...

  4. 77 FR 50516 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-08-21

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...., Scientific Review Officer, National Institute of Biomedical Imaging, And Bioengineering, National...

  5. 76 FR 572 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-01-05

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special..., PhD, Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering,...

  6. 78 FR 66373 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-11-05

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Grossman, DDS, Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering,...

  7. 77 FR 71605 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2012-12-03

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Biomedical Imaging and Bioengineering Special Emphasis Panel; MSM Program Review. Date: February 26,...

  8. 78 FR 3903 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2013-01-17

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Biomedical Imaging and, Bioengineering, National Institutes of Health, 6707 Democracy Boulevard, Room...

  9. 77 FR 13347 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2012-03-06

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Committee: National Institute of Biomedical Imaging and Bioengineering Special Emphasis Panel;...

  10. 77 FR 2987 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-01-20

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special..., National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, 6707...

  11. 78 FR 9066 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-02-07

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... of Biomedical Imaging and Bioengineering, National Institutes of Health, 6707 Democracy...

  12. 78 FR 3009 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-01-15

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Biomedical Imaging and Bioengineering, National Institutes of Health, 6707 Democracy Boulevard, Suite...

  13. 78 FR 37557 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2013-06-21

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...: Ruth Grossman, DDS, Scientific Review Officer, National Institute of Biomedical Imaging...

  14. 78 FR 31953 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2013-05-28

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...., Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering, National...

  15. 77 FR 17080 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-03-23

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Officer, National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health,...

  16. 75 FR 61769 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-10-06

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, 6707 Democracy...

  17. 76 FR 370 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-01-04

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Person: Manana Sukhareva, Ph.D., Scientific Review Officer, National Institute of Biomedical Imaging...

  18. 78 FR 46995 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-08-02

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Biomedical Imaging, and Bioengineering, 6707 Democracy Boulevard, Suite 959, Bethesda, MD 20892,...

  19. 77 FR 58146 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-09-19

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...: John K. Hayes, Ph.D., Scientific Review Officer, National Institute of Biomedical Imaging...

  20. 77 FR 74675 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2012-12-17

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Officer, National Institute of Biomedical Imaging and Bioengineering, 6707 Democracy Boulevard, Room...

  1. 76 FR 58023 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2011-09-19

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Officer, National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health,...

  2. 78 FR 25752 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2013-05-02

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Officer, National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health,...

  3. 78 FR 67373 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-11-12

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Grossman, DDS, Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering,...

  4. 78 FR 11660 - National Institute of Biomedical Imaging And Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-02-19

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging And Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special.... Hayes, Ph.D., Scientific Review Officer, National Institute of Biomedical Imaging and...

  5. 76 FR 76744 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-12-08

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Biomedical Imaging and Bioengineering, National Institutes of Health, 6707 Democracy Boulevard, Suite...

  6. 77 FR 25487 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-04-30

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Review Officer, National Institute of Biomedical Imaging and Bioengineering, National Institutes...

  7. 78 FR 67375 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-11-12

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Grossman, DDS, Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering,...

  8. 77 FR 51544 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-08-24

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Institute of Biomedical Imaging, and Bioengineering, National Institutes of Health, 6707 Democracy...

  9. 77 FR 54584 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-09-05

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Review Officer, National Institute of Biomedical Imaging and Bioengineering, National Institutes...

  10. 78 FR 52938 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-08-27

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special....D., Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering,...

  11. 78 FR 54259 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-09-03

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special..., Ph.D., Scientific Review Officer, National Institute of Biomedical Imaging, and Bioengineering,...

  12. 76 FR 23326 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-04-26

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special..., Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering, National...

  13. 77 FR 24972 - National Institute of Biomedical Imaging and Bioengineering Notice of Closed Meeting

    Science.gov (United States)

    2012-04-26

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Institute of Biomedical Imaging and Bioengineering. The meeting will be closed to the public as indicated... National Institute of Biomedical Imaging and Bioengineering, including consideration of...

  14. 78 FR 10185 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-02-13

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Biomedical Imaging and Bioengineering, National Institutes of Health, 6707 Democracy Boulevard, Room...

  15. 75 FR 25273 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-05-07

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Officer, National Institute of Biomedical Imaging & Bioeng, National Institutes of Health, 6707...

  16. 78 FR 35041 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-06-11

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Officer, National Institute of Biomedical Imaging and Bioengineering, 6707 Democracy Boulevard, Room...

  17. 77 FR 54581 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-09-05

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... of Biomedical Imaging and Bioengineering, National Institutes of Health, 6707 Democracy...

  18. 77 FR 27784 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-05-11

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Biomedical Imaging and Bioengineering, 6707 Democracy Boulevard, Room 960, Bethesda, MD 20892,...

  19. 78 FR 45254 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-07-26

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...., Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering, 6707...

  20. 78 FR 24763 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-04-26

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Institute of Biomedical Imaging and Bioengineering. The meeting will be closed to the public as indicated... National Institute of Biomedical Imaging and Bioengineering, including consideration of...

  1. Modern technologies for retinal scanning and imaging: an introduction for the biomedical engineer

    OpenAIRE

    Gramatikov, Boris I

    2014-01-01

    This review article is meant to help biomedical engineers and nonphysical scientists better understand the principles of, and the main trends in modern scanning and imaging modalities used in ophthalmology. It is intended to ease the communication between physicists, medical doctors and engineers, and hopefully encourage “classical” biomedical engineers to generate new ideas and to initiate projects in an area which has traditionally been dominated by optical physics. Most of the methods invo...

  2. Terahertz Imaging for Biomedical Applications Pattern Recognition and Tomographic Reconstruction

    CERN Document Server

    Yin, Xiaoxia; Abbott, Derek

    2012-01-01

    Terahertz Imaging for Biomedical Applications: Pattern Recognition and Tomographic Reconstruction presents the necessary algorithms needed to assist screening, diagnosis, and treatment, and these algorithms will play a critical role in the accurate detection of abnormalities present in biomedical imaging. Terahertz biomedical imaging has become an area of interest due to its ability to simultaneously acquire both image and spectral information. Terahertz imaging systems are being commercialized with an increasing number of trials performed in a biomedical setting. Terahertz tomographic imaging and detection technology contributes to the ability to identify opaque objects with clear boundaries,and would be useful to both in vivo and ex vivo environments. This book also: Introduces terahertz radiation techniques and provides a number of topical examples of signal and image processing, as well as machine learning Presents the most recent developments in an emerging field, terahertz radiation Utilizes new methods...

  3. An unsupervised strategy for biomedical image segmentation

    Directory of Open Access Journals (Sweden)

    Roberto Rodríguez

    2010-09-01

    Full Text Available Roberto Rodríguez1, Rubén Hernández21Digital Signal Processing Group, Institute of Cybernetics, Mathematics, and Physics, Havana, Cuba; 2Interdisciplinary Professional Unit of Engineering and Advanced Technology, IPN, MexicoAbstract: Many segmentation techniques have been published, and some of them have been widely used in different application problems. Most of these segmentation techniques have been motivated by specific application purposes. Unsupervised methods, which do not assume any prior scene knowledge can be learned to help the segmentation process, and are obviously more challenging than the supervised ones. In this paper, we present an unsupervised strategy for biomedical image segmentation using an algorithm based on recursively applying mean shift filtering, where entropy is used as a stopping criterion. This strategy is proven with many real images, and a comparison is carried out with manual segmentation. With the proposed strategy, errors less than 20% for false positives and 0% for false negatives are obtained.Keywords: segmentation, mean shift, unsupervised segmentation, entropy

  4. Nonlinear Polarimetric Microscopy for Biomedical Imaging

    Science.gov (United States)

    Samim, Masood

    A framework for the nonlinear optical polarimetry and polarimetric microscopy is developed. Mathematical equations are derived in terms of linear and nonlinear Stokes Mueller formalism, which comprehensively characterize the polarization properties of the incoming and outgoing radiations, and provide structural information about the organization of the investigated materials. The algebraic formalism developed in this thesis simplifies many predictions for a nonlinear polarimetry study and provides an intuitive understanding of various polarization properties for radiations and the intervening medium. For polarimetric microscopy experiments, a custom fast-scanning differential polarization microscope is developed, which is also capable of real-time three-dimensional imaging. The setup is equipped with a pair of high-speed resonant and galvanometric scanning mirrors, and supplemented by advanced adaptive optics and data acquisition modules. The scanning mirrors when combined with the adaptive optics deformable mirror enable fast 3D imaging. Deformable membrane mirrors and genetic algorithm optimization routines are employed to improve the imaging conditions including correcting the optical aberrations, maximizing signal intensities, and minimizing point-spread-functions of the focal volume. A field-programmable-gate array (FPGA) chip is exploited to rapidly acquire and process the multidimensional data. Using the nonlinear optical polarimetry framework and the home-built polarization microscope, a few biologically important tissues are measured and analyzed to gain insight as to their structure and dynamics. The structure and distribution of muscle sarcomere myosins, connective tissue collagen, carbohydrate-rich starch, and fruit fly eye retinal molecules are characterized with revealing polarization studies. In each case, using the theoretical framework, polarization sensitive data are analyzed to decipher the molecular orientations and nonlinear optical

  5. 75 FR 35820 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-06-23

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special..., ARRA Related Biomedical Research and Research Support Awards, National Institutes of Health, HHS)...

  6. 75 FR 39547 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-07-09

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special.... Contact Person: Ruth Grossman, DDS, Scientific Review Officer, National Institute of Biomedical...

  7. 76 FR 40922 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-07-12

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special.... Contact Person: Ruth Grossman, DDS, Scientific Review Officer, National Institute of Biomedical...

  8. 76 FR 69748 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-11-09

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Officer, National Institute of Biomedical Imagin and Bioengineering, National Institutes of...

  9. 75 FR 15715 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-03-30

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special.... Contact Person: Ruth Grossman, DDS, Scientific Review Officer, National Institute of Biomedical...

  10. Optical image encryption topology.

    Science.gov (United States)

    Yong-Liang, Xiao; Xin, Zhou; Qiong-Hua, Wang; Sheng, Yuan; Yao-Yao, Chen

    2009-10-15

    Optical image encryption topology is proposed based on the principle of random-phase encoding. Various encryption topological units, involving peer-to-peer, ring, star, and tree topologies, can be realized by an optical 6f system. These topological units can be interconnected to constitute an optical image encryption network. The encryption and decryption can be performed in both digital and optical methods.

  11. Interactive Processing and Visualization of Image Data forBiomedical and Life Science Applications

    Energy Technology Data Exchange (ETDEWEB)

    Staadt, Oliver G.; Natarjan, Vijay; Weber, Gunther H.; Wiley,David F.; Hamann, Bernd

    2007-02-01

    Background: Applications in biomedical science and life science produce large data sets using increasingly powerful imaging devices and computer simulations. It is becoming increasingly difficult for scientists to explore and analyze these data using traditional tools. Interactive data processing and visualization tools can support scientists to overcome these limitations. Results: We show that new data processing tools and visualization systems can be used successfully in biomedical and life science applications. We present an adaptive high-resolution display system suitable for biomedical image data, algorithms for analyzing and visualization protein surfaces and retinal optical coherence tomography data, and visualization tools for 3D gene expression data. Conclusion: We demonstrated that interactive processing and visualization methods and systems can support scientists in a variety of biomedical and life science application areas concerned with massive data analysis.

  12. Optical imaging and spectroscopy

    CERN Document Server

    Brady, David J

    2009-01-01

    An essential reference for optical sensor system design This is the first text to present an integrated view of the optical and mathematical analysis tools necessary to understand computational optical system design. It presents the foundations of computational optical sensor design with a focus entirely on digital imaging and spectroscopy. It systematically covers: Coded aperture and tomographic imaging Sampling and transformations in optical systems, including wavelets and generalized sampling techniques essential to digital system analysis Geometric, wave, and statis

  13. Collaborative Initiative in Biomedical Imaging to Study Complex Diseases

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Weili [The University of North Carolina at Chapel Hill; Fiddy, Michael A. [The University of North Carolina at Charlotte

    2012-03-31

    The work reported addressed these topics: Fluorescence imaging; Optical coherence tomography; X-ray interferometer/phase imaging system; Quantitative imaging from scattered fields, Terahertz imaging and spectroscopy; and Multiphoton and Raman microscopy.

  14. Integration Platform for Biomedical Image Analysis

    OpenAIRE

    Rantanen, Ville

    2015-01-01

    Images provide invaluable information to Biomedicine. Especially, microscopy as an information source has been providing knowledge for research and clinical diagnostics. We have moved away from simply looking at the images to quantifiable computerized image analysis. Over the last decades, image analysis developers have prepared algorithms and software to address various scientific enquiries using images. These software are often created for a single purpose. Naturally, not even the most gene...

  15. Biomedical probe using a fiber-optic coupled scintillator.

    Science.gov (United States)

    Swinth, K L; Ewins, J H

    1976-01-01

    A high-sensitivity biomedical radiation probe which employs a fiber-optic coupled NaI(Tl) scintillator as a detector is described. It was developed for in vivo counting of low-energy 239Pu photons from material located in the tracheobronchial lymph nodes.-This probe is 20 times as sensitive as a solid-state probe (avalanche diode) previously developed for this application. Tests with 99mTc show a sensitivity more than 90 times greater than biomedical probes using DcTe of GaAs; however, the improved sensitivity is largely due to an increased sensitive volume. Probes were evaluated in animals and phantoms for detection of 239Pu and for location of lung tumors labeled with 111In. PMID:1264039

  16. Optical breast imaging

    NARCIS (Netherlands)

    van de Ven, S.M.W.Y.

    2011-01-01

    Optical breast imaging uses near-infrared light to assess the optical properties of breast tissue. It can be performed relying on intrinsic breast tissue contrast alone or with the use of exogenous imaging agents that accumulate at the tumor site. Different tissue components have unique scattering a

  17. Continuous-terahertz-wave molecular imaging system for biomedical applications

    Science.gov (United States)

    Zhang, Rui; Zhang, Liangliang; Wu, Tong; Wang, Ruixue; Zuo, Shasha; Wu, Dong; Zhang, Cunlin; Zhang, Jue; Fang, Jing

    2016-07-01

    Molecular imaging techniques are becoming increasingly important in biomedical research and potentially in clinical practice. We present a continuous-terahertz (THz)-wave molecular imaging system for biomedical applications, in which an infrared (IR) laser is integrated into a 0.2-THz reflection-mode continuous-THz-wave imaging system to induce surface plasmon polaritons on the nanoparticles and further improve the intensity of the reflected signal from the water around the nanoparticles. A strong and rapid increment of the reflected THz signal in the nanoparticle solution upon the IR laser irradiation is demonstrated, using either gold or silver nanoparticles. This low-cost, simple, and stable continuous-THz-wave molecular imaging system is suitable for miniaturization and practical imaging applications; in particular, it shows great promise for cancer diagnosis and nanoparticle drug-delivery monitoring.

  18. Ultrasmall lanthanide oxide nanoparticles for biomedical imaging and therapy

    CERN Document Server

    Lee, Gang Ho

    2014-01-01

    Most books discuss general and broad topics regarding molecular imagings. However, Ultrasmall Lanthanide Oxide Nanoparticles for Biomedical Imaging and Therapy, will mainly focus on lanthanide oxide nanoparticles for molecular imaging and therapeutics. Multi-modal imaging capabilities will discussed, along with up-converting FI by using lanthanide oxide nanoparticles. The synthesis will cover polyol synthesis of lanthanide oxide nanoparticles, Surface coatings with biocompatible and hydrophilic ligands will be discussed and TEM images and dynamic light scattering (DLS) patterns will be

  19. Bessel filters applied in biomedical image processing

    Science.gov (United States)

    Mesa Lopez, Juan Pablo; Castañeda Saldarriaga, Diego Leon

    2014-06-01

    A magnetic resonance is an image obtained by means of an imaging test that uses magnets and radio waves to create body images, however, in some images it's difficult to recognize organs or foreign agents present in the body. With these Bessel filters the objective is to significantly increase the resolution of magnetic resonance images taken to make them much clearer in order to detect anomalies and diagnose the illness. As it's known, Bessel filters appear to solve the Schrödinger equation for a particle enclosed in a cylinder and affect the image distorting the colors and contours of it, therein lies the effectiveness of these filters, since the clear outline shows more defined and easy to recognize abnormalities inside the body.

  20. Biomedical Imaging and Computational Modeling in Biomechanics

    CERN Document Server

    Iacoviello, Daniela

    2013-01-01

    This book collects the state-of-art and new trends in image analysis and biomechanics. It covers a wide field of scientific and cultural topics, ranging from remodeling of bone tissue under the mechanical stimulus up to optimizing the performance of sports equipment, through the patient-specific modeling in orthopedics, microtomography and its application in oral and implant research, computational modeling in the field of hip prostheses, image based model development and analysis of the human knee joint, kinematics of the hip joint, micro-scale analysis of compositional and mechanical properties of dentin, automated techniques for cervical cell image analysis, and iomedical imaging and computational modeling in cardiovascular disease.   The book will be of interest to researchers, Ph.D students, and graduate students with multidisciplinary interests related to image analysis and understanding, medical imaging, biomechanics, simulation and modeling, experimental analysis.

  1. The Hidden Beauty in Biomedical Imaging.

    Science.gov (United States)

    Barker, Norman; Iacobuzio-Donahue, Christine

    2015-01-01

    Caretakers, researchers and photographers working in a busy academic settings, every day are faced with images that are awe-inspiring for their beauty and for the terror they may represent to patients suffering from disease. Beauty in this context is a relative term. It may be seen as the delicate lacework of cells within the normal human brain reminiscent of a Jackson Pollack masterpiece, or the multitude of colors and textures formed by fungal organisms in a microbiology lab. Herein lies the juxtaposition image makers seek to represent. When contemplated in isolation, each represents a visually interesting image. However, when viewed with an awareness of the context in which the image was obtained, each image takes on the ability to evoke an alternative human emotion.

  2. Extended-Cavity Semiconductor Wavelength-Swept Laser for Biomedical Imaging

    OpenAIRE

    Yun, S. H.; Boudoux, C.; Pierce, M. C.; de Boer, J F; Tearney, G. J.; Bouma, B. E.

    2004-01-01

    We demonstrate a compact high-power rapidly swept wavelength tunable laser source based on a semiconductor optical amplifier and an extended-cavity grating filter. The laser produces excellent output characteristics for biomedical imaging, exhibiting >4-mW average output power, 80-dB noise extinction with its center wavelength swept over 100 nm at 1310 nm at variable repetition rates up to 500 Hz.

  3. 77 FR 37684 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-06-22

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  4. 78 FR 42970 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-07-18

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  5. 78 FR 6126 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting.

    Science.gov (United States)

    2013-01-29

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  6. 75 FR 57969 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-09-23

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  7. 75 FR 6039 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-02-05

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  8. 76 FR 77546 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-12-13

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  9. 76 FR 5593 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-02-01

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  10. 77 FR 2737 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-01-19

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  11. 77 FR 3480 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-01-24

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  12. 78 FR 63998 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-10-25

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  13. 77 FR 38845 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-06-29

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  14. 76 FR 62814 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-10-11

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  15. 75 FR 54641 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-09-08

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  16. 77 FR 31624 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-05-29

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  17. 78 FR 55268 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-09-10

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  18. 78 FR 58547 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-09-24

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  19. 76 FR 28795 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-05-18

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  20. 78 FR 71627 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-11-29

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  1. 76 FR 28055 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-05-13

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  2. 76 FR 10910 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-02-28

    ... From the Federal Register Online via the Government Publishing Office ] DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering...

  3. Sodium Magnetic Resonance Imaging: Biomedical Applications

    CERN Document Server

    Madelin, Guillaume

    2012-01-01

    In this article, we present an up-to-date overview of the potential biomedical applications of sodium MRI in vivo. Sodium MRI is a subject of increasing interest in translational research as it can give some direct and quantitative biochemical information on the tissue viability, cell integrity and function, and therefore not only help the diagnosis but also the prognosis of diseases and treatment outcomes. It has already been applied in vivo in most of human tissues, such as brain for stroke or tumor detection and therapeutic response, in breast cancer, in articular cartilage, in muscle and in kidney, and it was shown in some studies that it could provide very useful new information not available through standard proton MRI. However, this technique is still very challenging due to the low detectable sodium signal in biological tissue with MRI and hardware/software limitations of the clinical scanners. The article is divided in three parts: (1) the role of sodium in biological tissues, (2) a short review on s...

  4. Biomedical signals and sensors II linking acoustic and optic biosignals and biomedical sensors

    CERN Document Server

    Kaniusas, Eugenijus

    2015-01-01

    The book set develops a bridge between physiologic mechanisms and diagnostic human engineering. While the first volume is focused on the interface between physiologic mechanisms and the resultant biosignals, this second volume is devoted to the interface between biosignals and biomedical sensors. That is, in the first volume, the physiologic mechanisms determining biosignals are described from the basic cellular level up to their advanced mutual coordination level. This second volume, considers the genesis of acoustic and optic biosignals and the associated sensing technology from a strategic point of view. As a novelty, this book discusses heterogeneous biosignals within a common frame. This frame comprises both the biosignal formation path from the biosignal source at the physiological level to biosignal propagation in the body, and the biosignal sensing path from the biosignal transmission in the sensor applied on the body up to its conversion to a, usually electric, signal. Some biosignals arise in the co...

  5. 78 FR 107 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-01-02

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Person: John K. Hayes, Ph.D., Scientific Review Officer, National Institute of Biomedical Imaging...

  6. 76 FR 15988 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

    Science.gov (United States)

    2011-03-22

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering.... App.), notice is hereby given of a meeting of the National Advisory Council for Biomedical Imaging and... personal privacy. Name of Committee: National Advisory Council for Biomedical Imaging and...

  7. 78 FR 76634 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

    Science.gov (United States)

    2013-12-18

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering.... App.), notice is hereby given of a meeting of the National Advisory Council for Biomedical Imaging and... of Committee: National Advisory Council for Biomedical Imaging and Bioengineering. Date: January...

  8. Optical imaging and metrology

    CERN Document Server

    Osten, Wolfgang

    2012-01-01

    A comprehensive review of the state of the art and advances in the field, while also outlining the future potential and development trends of optical imaging and optical metrology, an area of fast growth with numerous applications in nanotechnology and nanophysics. Written by the world's leading experts in the field, it fills the gap in the current literature by bridging the fields of optical imaging and metrology, and is the only up-to-date resource in terms of fundamental knowledge, basic concepts, methodologies, applications, and development trends.

  9. High sensitivity and high selectivity terahertz biomedical imaging

    Institute of Scientific and Technical Information of China (English)

    Seongsin M. Kim; William Baughman; David S. Wilbert; Lee Butler; Michael Bolus; Soner Balci; Patrick Kung

    2011-01-01

    We demonstrate two distinct emerging terahertz (THz) biomedical imaging techniques. One is based on the use of a new single frequency THz quantum cascade laser and the other is based on broadband THz time domain spectrocopy. The first method is employed to derive a metastasis lung tissue imaging at 3.7 THz with clear contrast between cancerous and healthy areas. The second approach is used to study an osseous tissue under several imaging modalities and achieve full THz spectroscopic imaging based on the frequency domain or on a fixed THz propagation time-delay. Sufficient contrast is achieved which facilitated the identification of regions with different cellular types and density compositions.%Terahertz (THz) imaging is a non-destructive,nonionizing imaging technology with potential applications in medicine,dentistry,pharmaceuticals,and homeland security[1-5].In these applications,THz biomedical imaging has become a particularly important and active field of research because of the potential for safer early screening of a disease.This will benefit the medical community tremendously and create considerable sociological impact.

  10. 78 FR 77474 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-12-23

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...). Contact Person: John K. Hayes, Ph.D., Scientific Review Officer, National Institute of Biomedical...

  11. 77 FR 49821 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-08-17

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special.... Contact Person: John K. Hayes, Ph.D., Scientific Review Officer, National Institute of Biomedical...

  12. 78 FR 24223 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-04-24

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...). Contact Person: John K. Hayes, Ph.D., Scientific Review Officer, National Institute of Biomedical...

  13. Optical imaging of biological tissues

    Science.gov (United States)

    Bouza Dominguez, Jorge

    , crosstalk effects and small artifacts appeared in all the cases (more intense in the DE images). Comparatively, the reconstructed images show a lesser influence of these undesirable 'effects than other approaches found in the literature. The results suggest that the DOT algorithm based on the TD-pSPN model is an accurate alternative to the DE for imaging optical properties of biological media. These results directly benefict the fields of therapeutics and time-domain optical imaging of biological tissues. Particularly, the presented work is a decisive step in the elaboration of an optical scanner for small animal imaging at our lab. Thus, a positive impact in the areas of clinical diagnosis and biomedical research are expected. Keywords: Light propagation in biological tissues; spectroscopy, fluorescence; time-domain diffuse optical tomography; simplified spherical harmonics equations; constrained optimization methods.

  14. New optical tomographic & topographic techniques for biomedical applications

    Science.gov (United States)

    Buytaert, Jan

    The mammalian middle ear contains the eardrum and the three auditory ossicles, and forms an impedance match between sound in air and pressure waves in the fluid of the inner ear. Without this intermediate system, with its unsurpassed efficiency and dynamic range, we would be practically deaf. Physics-based modeling of this extremely complex mechanical system is necessary to help our basic understanding of the functioning of hearing. Highly realistic models will make it possible to predict the outcome of surgical interventions and to optimize design of ossicle prostheses and active middle ear implants. To obtain such models and with realistic output, basic input data is still missing. In this dissertation I developed and used two new optical techniques to obtain two essential sets of data: accurate three-dimensional morphology of the middle ear structures, and elasticity parameters of the eardrum. The first technique is a new method for optical tomography of macroscopic biomedical objects, which makes it possible to measure the three-dimensional geometry of the middle ear ossicles and soft tissues which are connecting and suspending them. I made a new and high-resolution version of this orthogonal-plane fluorescence optical sectioning method, to obtain micrometer resolution in macroscopic specimens. The result is thus a complete 3-D model of the middle (and inner) ear of gerbil in unprecedented quality. On top of high-resolution morphological models of the middle ear structures, I applied the technique in other fields of research as well. The second device works according to a new optical profilometry technique which allows to measure shape and deformations of the eardrum and other membranes or objects. The approach is called projection moire profilometry, and creates moire interference fringes which contain the height information. I developed a setup which uses liquid crystal panels for grid projection and optical demodulation. Hence no moving parts are present and

  15. Development of biosensor based on imaging ellipsometry and biomedical applications

    Energy Technology Data Exchange (ETDEWEB)

    Jin, G., E-mail: gajin@imech.ac.c [NML, Institute of Mechanics, Chinese Academy of Sciences, 15 Bei-si-huan west Rd., Beijing 100190 (China); Meng, Y.H.; Liu, L.; Niu, Y.; Chen, S. [NML, Institute of Mechanics, Chinese Academy of Sciences, 15 Bei-si-huan west Rd., Beijing 100190 (China); Cai, Q.; Jiang, T.J. [Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101 (China)

    2011-02-28

    So far, combined with a microfluidic reactor array system, an engineering system of biosensor based on imaging ellipsometry is installed for biomedical applications, such as antibody screen, hepatitis B markers detection, cancer markers spectrum and virus recognition, etc. Furthermore, the biosensor in total internal reflection (TIR) mode has be improved by a spectroscopic light, optimization settings of polarization and low noise CCD which brings an obvious improvement of 10 time increase in the sensitivity and SNR, and 50 times lower concentration in the detection limit with a throughput of 48 independent channels and the time resolution of 0.04 S.

  16. Acousto-optic laser optical feedback imaging

    CERN Document Server

    Jacquin, Olivier; Lacot, Eric; Hugon, Olivier; De Chatellus, Hugues Guillet; François, Ramaz

    2012-01-01

    We present a photon noise and diffraction limited imaging method combining the imaging laser and ultrasonic waves. The laser optical feedback imaging (LOFI) technique is an ultrasensitive imaging method for imaging objects through or embedded within a scattering medium. However, LOFI performances are dramatically limited by parasitic optical feedback occurring in the experimental setup. In this work, we have tagged the ballistic photons by an acousto-optic effect in order to filter the parasitic feedback effect and to reach the theoretical and ultimate sensitivity of the LOFI technique. We present the principle and the experimental setup of the acousto-optic laser optical feedback imaging (AO-LOFI) technique, and we demonstrate the suppression of the parasitic feedback.

  17. Contributions on biomedical imaging, with a side-look at molecular imaging

    International Nuclear Information System (INIS)

    This report is intended as a brief introduction to the emerging scientific field of biomedical imaging. The breadth of the subject is shown and future fields of research are indicated, which hopefully will serve as a guide to the identification of starting points for the research in 'Biomedical and/or Molecular Imaging' at the GSF-National Research Center for Environment and Health. The report starts with a brief sketch of the history. Then a - necessarily incomplete - list of research topics is presented. It is organized in two parts: the first one addresses medical imaging, and the second one is concerned with biological point aspects of the matter. (orig.)

  18. High-energy proton imaging for biomedical applications

    Science.gov (United States)

    Prall, M.; Durante, M.; Berger, T.; Przybyla, B.; Graeff, C.; Lang, P. M.; LaTessa, C.; Shestov, L.; Simoniello, P.; Danly, C.; Mariam, F.; Merrill, F.; Nedrow, P.; Wilde, C.; Varentsov, D.

    2016-01-01

    The charged particle community is looking for techniques exploiting proton interactions instead of X-ray absorption for creating images of human tissue. Due to multiple Coulomb scattering inside the measured object it has shown to be highly non-trivial to achieve sufficient spatial resolution. We present imaging of biological tissue with a proton microscope. This device relies on magnetic optics, distinguishing it from most published proton imaging methods. For these methods reducing the data acquisition time to a clinically acceptable level has turned out to be challenging. In a proton microscope, data acquisition and processing are much simpler. This device even allows imaging in real time. The primary medical application will be image guidance in proton radiosurgery. Proton images demonstrating the potential for this application are presented. Tomographic reconstructions are included to raise awareness of the possibility of high-resolution proton tomography using magneto-optics. PMID:27282667

  19. High-energy proton imaging for biomedical applications

    Science.gov (United States)

    Prall, M.; Durante, M.; Berger, T.; Przybyla, B.; Graeff, C.; Lang, P. M.; Latessa, C.; Shestov, L.; Simoniello, P.; Danly, C.; Mariam, F.; Merrill, F.; Nedrow, P.; Wilde, C.; Varentsov, D.

    2016-06-01

    The charged particle community is looking for techniques exploiting proton interactions instead of X-ray absorption for creating images of human tissue. Due to multiple Coulomb scattering inside the measured object it has shown to be highly non-trivial to achieve sufficient spatial resolution. We present imaging of biological tissue with a proton microscope. This device relies on magnetic optics, distinguishing it from most published proton imaging methods. For these methods reducing the data acquisition time to a clinically acceptable level has turned out to be challenging. In a proton microscope, data acquisition and processing are much simpler. This device even allows imaging in real time. The primary medical application will be image guidance in proton radiosurgery. Proton images demonstrating the potential for this application are presented. Tomographic reconstructions are included to raise awareness of the possibility of high-resolution proton tomography using magneto-optics.

  20. Acquisition and manipulation of computed tomography images of the maxillofacial region for biomedical prototyping

    Energy Technology Data Exchange (ETDEWEB)

    Meurer, Maria Ines [Universidade Federal de Santa Catarina (UFSC), Florianopolis, SC (Brazil). Dept. of Pathology]. E-mail: emaninha@gmail.com; Meurer, Eduardo [Universidade do Sul de Santa Catarina (UNISUL), Tubarao, SC (Brazil); Silva, Jorge Vicente Lopes da; Santa Barbara, Ailton [Centro de Pesquisa Renato Archer (CenPRA), Campinas, SP (Brazil); Nobre, Luiz Felipe [Universidade Federal de Santa Catarina (UFSC), Florianopolis, SC (Brazil). Dept. of Clinical Practice; Oliveira, Marilia Gerhardt de [Pontificia Universidade Catolica do Rio Grande do Sul (PUCRS), Porto Alegre, RS (Brazil). Dept. of Surgery; Silva, Daniela Nascimento [Pontificia Universidade Catolica do Rio Grande do Sul (PUCRS), Porto Alegre, RS (Brazil). Faculdade de Odontologia. Dept. of Surgery

    2008-01-15

    Biomedical prototyping has resulted from a merger of rapid prototyping and imaging diagnosis technologies. However, this process is complex, considering the necessity of interaction between biomedical sciences and engineering. Good results are highly dependent on the acquisition of computed tomography images and their subsequent manipulation by means of specific software. The present study describes the experience of a multidisciplinary group of researchers in the acquisition and manipulation of computed tomography images of the maxillofacial region aiming at biomedical prototyping for surgical purposes. (author)

  1. Optical physics enables advances in multiphoton imaging

    International Nuclear Information System (INIS)

    Since the initial images were taken using a multiphoton imaging technique the method has rapidly established itself as the preferred method for imaging deeply into biological samples with micron resolution in three dimensions. Multiphoton imaging has thus enabled researchers in the life sciences to undertake studies that had previously been believed to be impossible without significantly perturbing the sample. Many of these experiments have only been realized due to close cooperation between optical physicists, from a range of disciplines, and the biomedical researchers. This paper will provide a general review of the current state of the field demonstrating how the various aspects of the physics development have brought the multiphoton technique to its current position at the forefront of biological microscopy. (topical review)

  2. 3D printing of tissue-simulating phantoms as a traceable standard for biomedical optical measurement

    Science.gov (United States)

    Dong, Erbao; Wang, Minjie; Shen, Shuwei; Han, Yilin; Wu, Qiang; Xu, Ronald

    2016-01-01

    Optical phantoms are commonly used to validate and calibrate biomedical optical devices in order to ensure accurate measurement of optical properties in biological tissue. However, commonly used optical phantoms are based on homogenous materials that reflect neither optical properties nor multi-layer heterogeneities of biological tissue. Using these phantoms for optical calibration may result in significant bias in biological measurement. We propose to characterize and fabricate tissue simulating phantoms that simulate not only the multi-layer heterogeneities but also optical properties of biological tissue. The tissue characterization module detects tissue structural and functional properties in vivo. The phantom printing module generates 3D tissue structures at different scales by layer-by-layer deposition of phantom materials with different optical properties. The ultimate goal is to fabricate multi-layer tissue simulating phantoms as a traceable standard for optimal calibration of biomedical optical spectral devices.

  3. Multidimensional biomedical image representation using a linear hypertree

    Science.gov (United States)

    Ibaroudene, Djaffer; Acharya, Raj S.

    1990-07-01

    Biomedical structures such as the beating heart are inherently multi-dimensional in nature. In addition to the three spatial directions which represent the object location and orientation, higher order dimensions can be assigned to represent various object parameters such as time and tissue density. In this paper, we propose a hierarchical data structure which can be mapped into a computer architecture that will efficiently store, manipulate, and display time varying images of multi-dimensional biomedical structures. This n-D object representation scheme which is called a linear hypertree is a generalization of the linear quadtree and octree from their respective 2-D and 3-D spaces to n-D environment. It is a hierarchical data structure which represents multi-dimensional volumetric information in a 2'-way branching tree. The basic properties of a linear hypertree are briefly presented along with the procedure for encoding the node rectangular coordinates into a hierarchical locational code. Two decoding techniques that transform the node locational code into its rectangular coordinate format are introduced. Some adjacency concepts in a multi-dimensional environment are defined. A neighbor finding algorithm which identifies the locational code of the adjacent hypertree node in a given direction is also presented. This algorithm does not convert the locational code to its rectangular coordinate form; instead, it operates directly on the node locational code in order to determine the neighbor's identification. Finally, Procedures for computing the locational codes of larger and smaller size neighbors are also included.

  4. Changing image of correlation optics: introduction

    DEFF Research Database (Denmark)

    Angelsky, Oleg V.; Desyatnikov, Anton S.; Gbur, Gregory J.;

    2016-01-01

    This feature issue of Applied Optics contains a series of selected papers reflecting recent progress of correlation optics and illustrating current trends in vector singular optics, internal energy flows at light fields, optical science of materials, and new biomedical applications of lasers. (C......) 2016 Optical Society of America...

  5. 76 FR 5184 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

    Science.gov (United States)

    2011-01-28

    ... published in the Federal Register on January 5, 2011, 76 FR 572. This Federal Register Notice has been... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Biomedical Imaging and Bioengineering Special Emphasis Panel, March 14, 2011, 6 p.m. to March 16, 2011, 12...

  6. 77 FR 25488 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

    Science.gov (United States)

    2012-04-30

    ... April 2, 2012, 77 FR 19675. The meeting location has been changed to The Bolger Center, 9600 Newbridge... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... for Biomedical Imaging and Bioengineering, May 21, 2012, 9:00 a.m. to 3:00 p.m., Bethesda...

  7. 78 FR 78982 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

    Science.gov (United States)

    2013-12-27

    ... published in the Federal Register on August 29, 2013, 78 FR 64506. The meeting notice is amended to change... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Biomedical Imaging and Bioengineering Special Emphasis Panel, December 11, 2013, 08:30 a.m.,...

  8. 78 FR 64506 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

    Science.gov (United States)

    2013-10-29

    ..., which was published in the Federal Register on July 26, 2013, 78 FR 45254. The meeting notice is amended... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Biomedical Imaging and Bioengineering Special Emphasis Panel, October 11, 2013, 10:00 a.m. to 5:00...

  9. 78 FR 64966 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

    Science.gov (United States)

    2013-10-30

    ..., which was published in the Federal Register on July 18, 2013, 78 FR 42970. The meeting notice is amended... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Biomedical Imaging and Bioengineering Special Emphasis Panel, October 10-11, 2013, 03:00 p.m.-06:00...

  10. 78 FR 64519 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

    Science.gov (United States)

    2013-10-29

    ..., which was published in the Federal Register on June 21, 2013, 78 FR 37557. The meeting notice is amended... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Biomedical Imaging and Bioengineering Special Emphasis Panel, October 3, 2013, 8:30 a.m. to 5:00...

  11. 78 FR 66755 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

    Science.gov (United States)

    2013-11-06

    ..., which was published in the Federal Register on August 2, 2013, 78 FR 46995. The meeting notice is... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Biomedical Imaging and Bioengineering Special Emphasis Panel, October 10-11, 2013, 09:00 a.m.-08:00...

  12. 78 FR 55268 - National Institute of Biomedical Imaging and Bioengineering Amended; Notice of Meeting

    Science.gov (United States)

    2013-09-10

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Biomedical Imaging and Bioengineering Special Emphasis Panel, November 6, 2013, 8:00 a.m. to 5:00...

  13. Chemometric Methods for Biomedical Raman Spectroscopy and Imaging

    Science.gov (United States)

    Reddy, Rohith K.; Bhargava, Rohit

    The vibrational spectrum is a quantitative measure of a sample's molecular composition. Hence, classical chemometric methods, especially regression-based, have focused on exact mapping between identity and sample composition. While this approach works well for molecular identifications and scientific investigations, problems of biomedical interest often involve complex mixtures of stochastically varying compositions and complex spatial distributions of molecules contributing to the recorded signals. Hence, the challenge often is not to predict the identity of materials but to determine chemical markers that help rapidly detect species (e.g. impurities, conformations, strains of bacteria) in large areas or indicate changes in function in complex tissue (e.g. cancer or tissue engineering). Hence, the rate of data analysis has to be rapid, has to be robust with respect to stochastic variance and the provided information is usually related to biomedical context and not to molecular compositions. The emergence of imaging techniques and clinical applications are spurring growth in this area. In this chapter, we discuss chemometric methods that are useful in this milieu. We first review methods for data pre-processing with a focus on the key challenges facing a spectroscopist. Next, we survey some of the well known, widely used pattern classification techniques under the framework of supervised and unsupervised classification. We discuss the applicability, advantages and drawbacks of each of these techniques and help the reader not only gain useful insights into the techniques themselves but also acquire an understating of the underlying ideas and principles. We conclude by providing examples of the coupled use of chemometric and statistical tools to develop robust classification protocols for prostate and breast tissue pathology. We specifically focus on the critical factors and pitfalls at each step in converting spectral data sets into hi-fidelity images useful for

  14. Mathematical Morphology Techniques For Image Processing Applications In Biomedical Imaging

    Science.gov (United States)

    Bartoo, Grace T.; Kim, Yongmin; Haralick, Robert M.; Nochlin, David; Sumi, Shuzo M.

    1988-06-01

    Mathematical morphology operations allow object identification based on shape and are useful for grouping a cluster of small objects into one object. Because of these capabilities, we have implemented and evaluated this technique for our study of Alzheimer's disease. The microscopic hallmark of Alzheimer's disease is the presence of brain lesions known as neurofibrillary tangles and senile plaques. These lesions have distinct shapes compared to normal brain tissue. Neurofibrillary tangles appear as flame-shaped structures, whereas senile plaques appear as circular clusters of small objects. In order to quantitatively analyze the distribution of these lesions, we have developed and applied the tools of mathematical morphology on the Pixar Image Computer. As a preliminary test of the accuracy of the automatic detection algorithm, a study comparing computer and human detection of senile plaques was performed by evaluating 50 images from 5 different patients. The results of this comparison demonstrates that the computer counts correlate very well with the human counts (correlation coefficient = .81). Now that the basic algorithm has been shown to work, optimization of the software will be performed to improve its speed. Also future improvements such as local adaptive thresholding will be made to the image analysis routine to further improve the systems accuracy.

  15. Modality prediction of biomedical literature images using multimodal feature representation

    Directory of Open Access Journals (Sweden)

    Pelka, Obioma

    2016-08-01

    Full Text Available This paper presents the modelling approaches performed to automatically predict the modality of images found in biomedical literature. Various state-of-the-art visual features such as Bag-of-Keypoints computed with dense SIFT descriptors, texture features and Joint Composite Descriptors were used for visual image representation. Text representation was obtained by vector quantisation on a Bag-of-Words dictionary generated using attribute importance derived from a χ-test. Computing the principal components separately on each feature, dimension reduction as well as computational load reduction was achieved. Various multiple feature fusions were adopted to supplement visual image information with corresponding text information. The improvement obtained when using multimodal features vs. visual or text features was detected, analysed and evaluated. Random Forest models with 100 to 500 deep trees grown by resampling, a multi class linear kernel SVM with C=0.05 and a late fusion of the two classifiers were used for modality prediction. A Random Forest classifier achieved a higher accuracy and computed Bag-of-Keypoints with dense SIFT descriptors proved to be a better approach than with Lowe SIFT.

  16. Optical image encryption based on diffractive imaging.

    Science.gov (United States)

    Chen, Wen; Chen, Xudong; Sheppard, Colin J R

    2010-11-15

    In this Letter, we propose a method for optical image encryption based on diffractive imaging. An optical multiple random phase mask encoding system is applied, and one of the phase-only masks is selected and laterally translated along a preset direction during the encryption process. For image decryption, a phase retrieval algorithm is proposed to extract a high-quality plaintext. The feasibility and effectiveness of the proposed method are demonstrated by numerical results. The proposed method can provide a new strategy instead of conventional interference methods, and it may open up a new research perspective for optical image encryption.

  17. Changing image of correlation optics: introduction.

    Science.gov (United States)

    Angelsky, Oleg V; Desyatnikov, Anton S; Gbur, Gregory J; Hanson, Steen G; Lee, Tim; Miyamoto, Yoko; Schneckenburger, Herbert; Wyant, James C

    2016-04-20

    This feature issue of Applied Optics contains a series of selected papers reflecting recent progress of correlation optics and illustrating current trends in vector singular optics, internal energy flows at light fields, optical science of materials, and new biomedical applications of lasers.

  18. Rational design of nanoparticles for biomedical imaging and photovoltaic applications

    Energy Technology Data Exchange (ETDEWEB)

    Qin, Haiyan

    2011-07-01

    This thesis aims to rationally design nanoparticles and promote their applications in biomedical imaging and photovoltaic cells. Quantum dots (QDs) are promising fluorescent probes for biomedical imaging. We have fabricated two types of MSA capped QDs: CdTe/ZnSe core/shell QDs synthesized via an aqueous method and CdTe QDs via a hydrothermal method. They present high quantum yields (QYs), narrow emission band widths, high photo- and pH-stability, and low cytotoxicity. QD-IgG probes were produced and applied for labeling breast cancer marker HER2 proteins on MCF-7 cells. For the purpose of single molecule tracking using QDs as fluorescent probes, we use small affibodies instead of antibodies to produce QD-affibody probes. Smaller QD-target protein complexes are obtained using a direct immunofluorescence approach. These QD-affibody probes are developed to study the dynamic motion of single HER2 proteins on A431 cell membranes. Fluorescence blinking in single QDs is harmful for dynamic tracking due to information loss. We have experimentally studied the blinking phenomenon and the mechanism behind. We have discovered an emission bunching effect that two nearby QDs tend to emit light synchronously. The long-range Coulomb potential induced by the negative charge on the QD surface is found to be the major cause for the single QD blinking and the emission bunching in QD pairs. We have studied the in vitro cytotoxicity of CdTe QDs to human umbilical vein endothelial cells (HUVECs). The QDs treatment increases the intracellular reactive oxygen species (ROS) level and disrupts the mitochondrial membrane potential. The protein expression levels indicate that the mitochondria apoptosis is the main cause of HUVCEs apoptosis induced by CdTe QDs. Gold nanorods (GNRs) are scattering probes due to their tunable surface plasmon resonance (SPR) enhanced scattering spectrum. In order to control the yield and morphology of GNRs, we have systematically studied the effects of composition

  19. Signal and image analysis for biomedical and life sciences

    CERN Document Server

    Sun, Changming; Pham, Tuan D; Vallotton, Pascal; Wang, Dadong

    2014-01-01

    With an emphasis on applications of computational models for solving modern challenging problems in biomedical and life sciences, this book aims to bring collections of articles from biologists, medical/biomedical and health science researchers together with computational scientists to focus on problems at the frontier of biomedical and life sciences. The goals of this book are to build interactions of scientists across several disciplines and to help industrial users apply advanced computational techniques for solving practical biomedical and life science problems. This book is for users in t

  20. Optical coherence tomography-based micro-particle image velocimetry.

    Science.gov (United States)

    Mujat, Mircea; Ferguson, R Daniel; Iftimia, Nicusor; Hammer, Daniel X; Nedyalkov, Ivaylo; Wosnik, Martin; Legner, Hartmut

    2013-11-15

    We present a new application of optical coherence tomography (OCT), widely used in biomedical imaging, to flow analysis in near-wall hydrodynamics for marine research. This unique capability, called OCT micro-particle image velocimetry, provides a high-resolution view of microscopic flow phenomena and measurement of flow statistics within the first millimeter of a boundary layer. The technique is demonstrated in a small flow cuvette and in a water tunnel.

  1. Current Developments on Optical Feedback Interferometry as an All-Optical Sensor for Biomedical Applications

    Directory of Open Access Journals (Sweden)

    Julien Perchoux

    2016-05-01

    Full Text Available Optical feedback interferometry (OFI sensors are experiencing a consistent increase in their applications to biosensing due to their contactless nature, low cost and compactness, features that fit very well with current biophotonics research and market trends. The present paper is a review of the work in progress at UPC-CD6 and LAAS-CNRS related to the application of OFI to different aspects of biosensing, both in vivo and ex vivo. This work is intended to present the variety of opportunities and potential applications related to OFI that are available in the field. The activities presented are divided into two main sensing strategies: The measurement of optical path changes and the monitoring of flows, which correspond to sensing strategies linked to the reconstruction of changes of amplitude from the interferometric signal, and to classical Doppler frequency measurements, respectively. For optical path change measurements, measurements of transient pulses, usual in biosensing, together with the measurement of large displacements applied to designing palliative care instrumentation for Parkinson disease are discussed. Regarding the Doppler-based approach, progress in flow-related signal processing and applications in real-time monitoring of non-steady flows, human blood flow monitoring and OFI pressure myograph sensing will be presented. In all cases, experimental setups are discussed and results presented, showing the versatility of the technique. The described applications show the wide capabilities in biosensing of the OFI sensor, showing it as an enabler of low-cost, all-optical, high accuracy biomedical applications.

  2. Optical coherence tomography-current technology and applications in clinical and biomedical research

    DEFF Research Database (Denmark)

    Marschall, Sebastian; Sander, Birgit; Mogensen, Mette;

    2011-01-01

    Optical coherence tomography (OCT) is a noninvasive imaging technique that provides real-time two- and three-dimensional images of scattering samples with micrometer resolution. By mapping the local reflectivity, OCT visualizes the morphology of the sample. In addition, functional properties such...... biology. The number of companies involved in manufacturing OCT systems has increased substantially during the last few years (especially due to its success in opthalmology), and this technology can be expected to continue to spread into various fields of application....... such as birefringence, motion, or the distributions of certain substances can be detected with high spatial resolution. Its main field of application is biomedical imaging and diagnostics. In ophthalmology, OCT is accepted as a clinical standard for diagnosing and monitoring the treatment of a number of retinal...... diseases, and OCT is becoming an important instrument for clinical cardiology. New applications are emerging in various medical fields, such as early-stage cancer detection, surgical guidance, and the early diagnosis of musculoskeletal diseases. OCT has also proven its value as a tool for developmental...

  3. Imaging investigations of optic gliomas

    International Nuclear Information System (INIS)

    Objective: To evaluate CT and MR imaging findings of optic gliomas and their clinical significance. Methods: CT and MR imaging findings of 20 patients with pathologically confirmed optic gliomas were analyzed retrospectively. The age of the patients ranged from 8 months to 69 years. Ten patients were female and ten were male. CT scanning was performed in 10 patients with contrast scanning in 2, and MR imaging was performed in 19 patients with contrast scanning in 14. Results: Of the 20 cases with optic gliomas, a fusiform thickening of the optic nerve was found on CT and/or MR imaging in 12, a tubular enlarging and kinking of the optic nerve in 5, a dumb-bell mass of the optic nerve in 2, and an ovoid mass in 1. Enlargement of intraorbital and intracanalicular segments of the optic nerve was seen in all 20 cases, simultaneous enlargement of intracranial segment in 15, a simultaneous mass of intraocular segment in 4, a simultaneous mass of optic chiasm in 6, and simultaneous enlargement of optic tract in 2. CT scanning performed in 10 patients showed iso-density mass. Enhancement of enlarged optic nerve was observed on postcontrast CT in two. MR imaging performed in 19 patients displayed a long T1 and long T2 signal intensity mass in 12, a long T1 and identical T2 signal intensity mass in 5, and an isointense mass on T1- and T2- weighted images in 2. After contrast administration in 14 cases, marked enhancement of the mass was seen in 12 cases, and moderate enhancement was demonstrated in 2. Of the 7 patients associated with neurofibromatosis I, four optic gliomas appeared as a specific sign-isointense in the center on both T1- and T2-weighted images , hypointense on T1- and T2-weighted images in the intermediate portion, and long T1 and long T2 signal intensity in peripheral portion. After statistical analysis, MR imaging was superior to CT in demonstrating the tumor involvement of the intracanalicular and intracranial segments of the optic nerve (P<0

  4. Biomedical Image Edge Detection using an Ant Colony Optimization Based on Artificial Neural Networks

    Directory of Open Access Journals (Sweden)

    Javad Rahebi

    2011-12-01

    Full Text Available Ant colony optimization (ACO is the algorithm that has inspired from natural behavior of ants life, which the ants leaved pheromone to search food on the ground. In this paper, ACO is introduced for resolving the edge detection in the biomedical image. Edge detection method based on ACO is able to create a matrix pheromone that shows information of available edge in each location of edge pixel which is created based on the movements of a number of ants on the biomedical image. Moreover, the movements of these ants are created by local fluctuation of biomedical image intensity values. The detected edge biomedical images have low quality rather than detected edge biomedical image resulted of a classic mask and won’t result application of these masks to edge detection biomedical image obtained of ACO. In proposed method, we use artificial neuralnetwork with supervised learning along with momentum to improve edge detection based on ACO. The experimental results shows that make use neural network are very effective in edge detection based on ACO.

  5. Introduction to fiber optics: Sensors for biomedical applications

    OpenAIRE

    Shah, R. Y.; Y. K. Agrawal

    2011-01-01

    The paper focuses on the introduction of fiber optics, a fusion of science and engineering and describes the materials generally used for its construction along with the procedure used to design the fibers. It gives an idea of the materials used for the construction along with the pros and cons associated with them and various factors governing the emission of ultraviolet, infrared or visible radiations. The central core revolves around the applications of optical fibers in the medical and bi...

  6. Performance of a novel wafer scale CMOS active pixel sensor for bio-medical imaging.

    Science.gov (United States)

    Esposito, M; Anaxagoras, T; Konstantinidis, A C; Zheng, Y; Speller, R D; Evans, P M; Allinson, N M; Wells, K

    2014-07-01

    Recently CMOS active pixels sensors (APSs) have become a valuable alternative to amorphous silicon and selenium flat panel imagers (FPIs) in bio-medical imaging applications. CMOS APSs can now be scaled up to the standard 20 cm diameter wafer size by means of a reticle stitching block process. However, despite wafer scale CMOS APS being monolithic, sources of non-uniformity of response and regional variations can persist representing a significant challenge for wafer scale sensor response. Non-uniformity of stitched sensors can arise from a number of factors related to the manufacturing process, including variation of amplification, variation between readout components, wafer defects and process variations across the wafer due to manufacturing processes. This paper reports on an investigation into the spatial non-uniformity and regional variations of a wafer scale stitched CMOS APS. For the first time a per-pixel analysis of the electro-optical performance of a wafer CMOS APS is presented, to address inhomogeneity issues arising from the stitching techniques used to manufacture wafer scale sensors. A complete model of the signal generation in the pixel array has been provided and proved capable of accounting for noise and gain variations across the pixel array. This novel analysis leads to readout noise and conversion gain being evaluated at pixel level, stitching block level and in regions of interest, resulting in a coefficient of variation ⩽1.9%. The uniformity of the image quality performance has been further investigated in a typical x-ray application, i.e. mammography, showing a uniformity in terms of CNR among the highest when compared with mammography detectors commonly used in clinical practice. Finally, in order to compare the detection capability of this novel APS with the technology currently used (i.e. FPIs), theoretical evaluation of the detection quantum efficiency (DQE) at zero-frequency has been performed, resulting in a higher DQE for this

  7. Optical and digital image processing

    CERN Document Server

    Cristobal, Gabriel; Thienpont, Hugo

    2011-01-01

    In recent years, Moore's law has fostered the steady growth of the field of digital image processing, though the computational complexity remains a problem for most of the digital image processing applications. In parallel, the research domain of optical image processing has matured, potentially bypassing the problems digital approaches were suffering and bringing new applications. The advancement of technology calls for applications and knowledge at the intersection of both areas but there is a clear knowledge gap between the digital signal processing and the optical processing communities. T

  8. Micro-optics for imaging.

    Energy Technology Data Exchange (ETDEWEB)

    Boye, Robert R.

    2010-09-01

    This project investigates the fundamental imaging capability of an optic with a physical thickness substantially less than 1 mm. The analysis assumes that post-processing can overcome certain restrictions such as detector pixel size and image degradation due to aberrations. A first order optical analysis quickly reveals the limitations of even an ideal thin lens to provide sufficient image resolution and provides the justification for pursuing an annular design. Some straightforward examples clearly show the potential of this approach. The tradeoffs associated with annular designs, specifically field of view limitations and reduced mid-level spatial frequencies, are discussed and their impact on the imaging performance evaluated using several imaging examples. Additionally, issues such as detector acceptance angle and the need to balance aberrations with resolution are included in the analysis. With these restrictions, the final results present an excellent approximation of the expected performance of the lens designs presented.

  9. Introduction: Feature Issue on Phantoms for the Performance Evaluation and Validation of Optical Medical Imaging Devices

    OpenAIRE

    Hwang, Jeeseong; Ramella-Roman, Jessica C.; Nordstrom, Robert

    2012-01-01

    The editors introduce the Biomedical Optics Express feature issue on “Phantoms for the Performance Evaluation and Validation of Optical Medical Imaging Devices.” This topic was the focus of a technical workshop that was held on November 7–8, 2011, in Washington, D.C. The feature issue includes 13 contributions from workshop attendees.

  10. Interactive processing and visualization of image data for biomedical and life science applications

    OpenAIRE

    Staadt, Oliver G.; Natarajan, Vijay; Weber, Gunther H.; Wiley, David F; Hamann, Bernd

    2007-01-01

    Background Applications in biomedical science and life science produce large data sets using increasingly powerful imaging devices and computer simulations. It is becoming increasingly difficult for scientists to explore and analyze these data using traditional tools. Interactive data processing and visualization tools can support scientists to overcome these limitations. Results We show that new data processing tools and visualization systems can be used successfully in biomedical and life s...

  11. Interactive processing and visualization of image data for biomedical and life science applications

    OpenAIRE

    Staadt, Oliver G; Natarajan, Vijay; Weber, Gunther H.; Wiley, David F.; Hamann, Bernd

    2007-01-01

    Background: Applications in biomedical science and life science produce large data sets using increasingly powerful imaging devices and computer simulations. It is becoming increasingly difficult for scientists to explore and analyze these data using traditional tools. Interactive data processing and visualization tools can support scientists to overcome these limitations. Results: We show that new data processing tools and visualization systems can be used successfully in biomedical and l...

  12. Interactive Processing and Visualization of Image Data for Biomedical and Life Science Applications

    OpenAIRE

    Staadt, Oliver G; Natarjan, Vijay; Weber, Gunther H.; Wiley, David F.; Hamann, Bernd

    2007-01-01

    Background Applications in biomedical science and life science produce large data sets using increasingly powerful imaging devices and computer simulations. It is becoming increasingly difficult for scientists to explore and analyze these data using traditional tools. Interactive data processing and visualization tools can support scientists to overcome these limitations. Results We show that new data processing tools and visualization systems can be used successfully in biomedical and life s...

  13. Beamlines of the biomedical imaging and therapy facility at the Canadian light source – part 3

    Energy Technology Data Exchange (ETDEWEB)

    Wysokinski, Tomasz W., E-mail: bmit@lightsource.ca [Canadian Light Source, Saskatoon, SK (Canada); Chapman, Dean [Anatomy and Cell Biology, University of Saskatchewan, Saskatoon, SK (Canada); Adams, Gregg [Western College of Veterinary Medicine, Saskatoon, SK (Canada); Renier, Michel [European Synchrotron Radiation Facility, Grenoble (France); Suortti, Pekka [Department of Physics, University of Helsinki (Finland); Thomlinson, William [Department of Physics, University of Saskatchewan, Saskatoon, SK (Canada)

    2015-03-01

    The BioMedical Imaging and Therapy (BMIT) facility provides synchrotron-specific imaging and radiation therapy capabilities [1–4]. We describe here the Insertion Device (ID) beamline 05ID-2 with the beam terminated in the SOE-1 (Secondary Optical Enclosure) experimental hutch. This endstation is designed for imaging and therapy research primarily in animals ranging in size from mice to humans to horses, as well as tissue specimens including plants. Core research programs include human and animal reproduction, cancer imaging and therapy, spinal cord injury and repair, cardiovascular and lung imaging and disease, bone and cartilage growth and deterioration, mammography, developmental biology, gene expression research as well as the introduction of new imaging methods. The source for the ID beamline is a multi-pole superconducting 4.3 T wiggler [5]. The high field gives a critical energy over 20 keV. The high critical energy presents shielding challenges and great care must be taken to assess shielding requirements [6–9]. The optics in the POE-1 and POE-3 hutches [4,10] prepare a monochromatic beam that is 22 cm wide in the last experimental hutch SOE-1. The double crystal bent-Laue or Bragg monochromator, or the single-crystal K-edge subtraction (KES) monochromator provide an energy range appropriate for imaging studies in animals (20–100+ keV). SOE-1 (excluding the basement structure 4 m below the experimental floor) is 6 m wide, 5 m tall and 10 m long with a removable back wall to accommodate installation and removal of the Large Animal Positioning System (LAPS) capable of positioning and manipulating animals as large as a horse [11]. This end-station also includes a unique detector positioner with a vertical travel range of 4.9 m which is required for the KES imaging angle range of +12.3° to –7.3°. The detector positioner also includes moveable shielding integrated with the safety shutters. An update on the status of the other two end-stations at BMIT

  14. Beamlines of the biomedical imaging and therapy facility at the Canadian light source – part 3

    International Nuclear Information System (INIS)

    The BioMedical Imaging and Therapy (BMIT) facility provides synchrotron-specific imaging and radiation therapy capabilities [1–4]. We describe here the Insertion Device (ID) beamline 05ID-2 with the beam terminated in the SOE-1 (Secondary Optical Enclosure) experimental hutch. This endstation is designed for imaging and therapy research primarily in animals ranging in size from mice to humans to horses, as well as tissue specimens including plants. Core research programs include human and animal reproduction, cancer imaging and therapy, spinal cord injury and repair, cardiovascular and lung imaging and disease, bone and cartilage growth and deterioration, mammography, developmental biology, gene expression research as well as the introduction of new imaging methods. The source for the ID beamline is a multi-pole superconducting 4.3 T wiggler [5]. The high field gives a critical energy over 20 keV. The high critical energy presents shielding challenges and great care must be taken to assess shielding requirements [6–9]. The optics in the POE-1 and POE-3 hutches [4,10] prepare a monochromatic beam that is 22 cm wide in the last experimental hutch SOE-1. The double crystal bent-Laue or Bragg monochromator, or the single-crystal K-edge subtraction (KES) monochromator provide an energy range appropriate for imaging studies in animals (20–100+ keV). SOE-1 (excluding the basement structure 4 m below the experimental floor) is 6 m wide, 5 m tall and 10 m long with a removable back wall to accommodate installation and removal of the Large Animal Positioning System (LAPS) capable of positioning and manipulating animals as large as a horse [11]. This end-station also includes a unique detector positioner with a vertical travel range of 4.9 m which is required for the KES imaging angle range of +12.3° to –7.3°. The detector positioner also includes moveable shielding integrated with the safety shutters. An update on the status of the other two end-stations at BMIT

  15. Biomedical Image Processing Using FCM Algorithm Based on the Wavelet Transform

    Institute of Scientific and Technical Information of China (English)

    YAN Yu-hua; WANG Hui-min; LI Shi-pu

    2004-01-01

    An effective processing method for biomedical images and the Fuzzy C-mean (FCM) algorithm based on the wavelet transform are investigated.By using hierarchical wavelet decomposition, an original image could be decomposed into one lower image and several detail images. The segmentation started at the lowest resolution with the FCM clustering algorithm and the texture feature extracted from various sub-bands. With the improvement of the FCM algorithm, FCM alternation frequency was decreased and the accuracy of segmentation was advanced.

  16. A novel lossless robust watermarking method for copyright protection of biomedical image.

    Science.gov (United States)

    Chen, Zhigang; Deng, Xiaohong; Zeng, Feng; Liu, Huiwen; Chen, Liang

    2013-03-01

    Nanoscience and Nanotechnology promotes the development of biomedical imaging devices, more and more valuable biomedical images are transmitted through the open network, and their copyright suffers a major challenge. This paper proposes a new lossless robust watermarking method to realize biomedical image's copyright protection. For high-resolution biomedical images, the redundant theory and histogram shifting method based on image block's difference are utilized to repeatedly embed copyright watermark into different color channels. In the extracting procedure, each layer's watermark information can be extracted from watermarked image respectively, and the final watermark is judged by the voting theory. The redundant scheme and voting theory guarantees the watermark can resist against random noise's attack well. Besides, in order to reduce the watermark overhead in embedding procedure, the histogram narrowing down technique is used to tackle with those image blocks would overflows and underflows. Experimental results showed that the proposed method outperformed the existing semi-fragile reversible watermarking scheme and provided a great robustness against moderate JPEG compression and salt-pepper and Gaussian noise.

  17. A Self-Referenced Optical Intensity Sensor Network Using POFBGs for Biomedical Applications

    Directory of Open Access Journals (Sweden)

    Alberto Tapetado Moraleda

    2014-12-01

    Full Text Available This work bridges the gap between the remote interrogation of multiple optical sensors and the advantages of using inherently biocompatible low-cost polymer optical fiber (POF-based photonic sensing. A novel hybrid sensor network combining both silica fiber Bragg gratings (FBG and polymer FBGs (POFBG is analyzed. The topology is compatible with WDM networks so multiple remote sensors can be addressed providing high scalability. A central monitoring unit with virtual data processing is implemented, which could be remotely located up to units of km away. The feasibility of the proposed solution for potential medical environments and biomedical applications is shown.

  18. Bio-medical X-ray imaging with spectroscopic pixel detectors

    CERN Document Server

    Butler, A P H; Tipples, R; Cook, N; Watts, R; Meyer, J; Bell, A J; Melzer, T R; Butler, P H

    2008-01-01

    The aim of this study is to review the clinical potential of spectroscopic X-ray detectors and to undertake a feasibility study using a novel detector in a clinical hospital setting. Detectors currently in development, such as Medipix-3, will have multiple energy thresholds allowing for routine use of spectroscopic bio-medical imaging. We have coined the term MARS (Medipix All Resolution System) for bio-medical images that provide spatial, temporal, and energy information. The full clinical significance of spectroscopic X-ray imaging is difficult to predict but insights can be gained by examining both image reconstruction artifacts and the current uses of dual-energy techniques. This paper reviews the known uses of energy information in vascular imaging and mammography, clinically important fields. It then presents initial results from using Medipix-2, to image human tissues within a clinical radiology department. Detectors currently in development, such as Medipix-3, will have multiple energy thresholds allo...

  19. Biomedical image analysis recipes in Matlab for life scientists and engineers

    CERN Document Server

    Reyes-Aldasoro, Constantino Carlos

    2015-01-01

    As its title suggests, this innovative book has been written for life scientists needing to analyse their data sets, and programmers, wanting a better understanding of the types of experimental images life scientists investigate on a regular basis. Each chapter presents one self-contained biomedical experiment to be analysed. Part I of the book presents its two basic ingredients: essential concepts of image analysis and Matlab. In Part II, algorithms and techniques are shown as series of 'recipes' or solved examples that show how specific techniques are applied to a biomedical experiments like

  20. Coherent anti-Stokes Raman scattering for label-free biomedical imaging

    International Nuclear Information System (INIS)

    Coherent anti-Stokes Raman scattering (CARS) has established itself as an imaging technique capable of providing video-rate imaging of biological specimens through vibrational coherence of endogenous molecules. Current techniques predominantly involve the application of costly, invasive and potentially non-specific dyes or labels for imaging biomolecules. CARS microscopy can however provide a high-resolution and non-invasive alternative for imaging biomolecules of interest without the need for exogenous labels. Here we provide an overview of CARS including the technique and common instrumentation as well as its applications in biomedical imaging. We discuss the major biomedical areas where CARS has been applied such as in evaluating liver disease, progression of atherosclerosis, tumour classification and tracking drug delivery, whilst also assessing the future challenges for clinical translation. (special issue article)

  1. National Institute of Standards and Technology measurement service of the optical properties of biomedical phantoms: current status

    Science.gov (United States)

    Lemaillet, Paul; Cooksey, Catherine C.; Levine, Zachary H.; Pintar, Adam L.; Hwang, Jeeseong; Allen, David W.

    2016-03-01

    The National Institute of Standards and Technology (NIST) has maintained scales for reflectance and transmittance over several decades. The scales are primarily intended for regular transmittance, mirrors, and solid surface scattering diffusers. The rapidly growing area of optical medical imaging needs a scale for volume scattering of diffuse materials that are used to mimic the optical properties of tissue. Such materials are used as phantoms to evaluate and validate instruments under development intended for clinical use. To address this need, a double-integrating sphere based instrument has been installed to measure the optical properties of tissue-mimicking phantoms. The basic system and methods have been described in previous papers. An important attribute in establishing a viable calibration service is the estimation of measurement uncertainties. The use of custom models and comparisons with other established scales enabled uncertainty measurements. Here, we describe the continuation of those efforts to advance the understanding of the uncertainties through two independent measurements: the bidirectional reflectance distribution function and the bidirectional transmittance distribution function of a commercially available solid biomedical phantom. A Monte Carlo-based model is used and the resulting optical properties are compared to the values provided by the phantom manufacturer.

  2. Basic research and clinical application of optical molecular imaging in breast cancer

    International Nuclear Information System (INIS)

    As a rapidly developing biomedical imaging technology,in vivo optical molecular imaging has been widely applied in various research fields owing to its unique real-time, quantitative and noninvasive characteristics. The applications of in vivo optical imaging technology in the basic and clinical research of breast cancer were reviewed, including detection of distant metastasis,tumor apoptosis, cell cycle, hypoxia and angiogenesis, ER-mediated molecular pathway, breast cancer stem cells, early diagnosis, sentinel node biopsy, evaluation of drug efficacy and detection of human epidermal growth factor receptor-2 (HER-2) expression. They all seem to have a promising potential in in vivo optical molecular imaging. (authors)

  3. Random laser illumination: an ideal source for biomedical polarization imaging?

    Science.gov (United States)

    Carvalho, Mariana T.; Lotay, Amrit S.; Kenny, Fiona M.; Girkin, John M.; Gomes, Anderson S. L.

    2016-03-01

    Imaging applications increasingly require light sources with high spectral density (power over spectral bandwidth. This has led in many cases to the replacement of conventional thermal light sources with bright light-emitting diodes (LEDs), lasers and superluminescent diodes. Although lasers and superluminescent diodes appear to be ideal light sources due to their narrow bandwidth and power, however, in the case of full-field imaging, their spatial coherence leads to coherent artefacts, such as speckle, that corrupt the image. LEDs, in contrast, have lower spatial coherence and thus seem the natural choice, but they have low spectral density. Random Lasers are an unconventional type of laser that can be engineered to provide low spatial coherence with high spectral density. These characteristics makes them potential sources for biological imaging applications where specific absorption and reflection are the characteristics required for state of the art imaging. In this work, a Random Laser (RL) is used to demonstrate speckle-free full-field imaging for polarization-dependent imaging in an epi-illumination configuration. We compare LED and RL illumination analysing the resulting images demonstrating that the RL illumination produces an imaging system with higher performance (image quality and spectral density) than that provided by LEDs.

  4. Endovascular Device Testing with Particle Image Velocimetry Enhances Undergraduate Biomedical Engineering Education

    Science.gov (United States)

    Nair, Priya; Ankeny, Casey J.; Ryan, Justin; Okcay, Murat; Frakes, David H.

    2016-01-01

    We investigated the use of a new system, HemoFlow™, which utilizes state of the art technologies such as particle image velocimetry to test endovascular devices as part of an undergraduate biomedical engineering curriculum. Students deployed an endovascular stent into an anatomical model of a cerebral aneurysm and measured intra-aneurysmal flow…

  5. iMole, a web based image retrieval system from biomedical literature.

    Science.gov (United States)

    Giordano, Manuela; Natale, Massimo; Cornaz, Moreno; Ruffino, Andrea; Bonino, Dario; Bucci, Enrico M

    2013-07-01

    iMole is a platform that automatically extracts images and captions from biomedical literature. Images are tagged with terms contained in figure captions by means of a sophisticate text-mining tool. Moreover, iMole allows the user to upload directly their own images within the database and manually tag images by curated dictionary. Using iMole the researchers can develop a proper biomedical image database, storing the images extracted from paper of interest, image found on the web repositories, and their own experimental images. In order to show the functioning of the platform, we used iMole to build a 2DE database. Briefly, tagged 2DE gel images were collected and stored in a searchable 2DE gel database, available to users through an interactive web interface. Images were obtained by automatically parsing 16,608 proteomic publications, which yielded more than 16,500 images. The database can be further expanded by users with images of interest trough a manual uploading process. iMole is available with a preloaded set of 2DE gel data at http://imole.biodigitalvalley.com.

  6. Coded Aperture Imaging for Fluorescent X-rays-Biomedical Applications

    Energy Technology Data Exchange (ETDEWEB)

    Haboub, Abdel; MacDowell, Alastair; Marchesini, Stefano; Parkinson, Dilworth

    2013-06-01

    Employing a coded aperture pattern in front of a charge couple device pixilated detector (CCD) allows for imaging of fluorescent x-rays (6-25KeV) being emitted from samples irradiated with x-rays. Coded apertures encode the angular direction of x-rays and allow for a large Numerical Aperture x- ray imaging system. The algorithm to develop the self-supported coded aperture pattern of the Non Two Holes Touching (NTHT) pattern was developed. The algorithms to reconstruct the x-ray image from the encoded pattern recorded were developed by means of modeling and confirmed by experiments. Samples were irradiated by monochromatic synchrotron x-ray radiation, and fluorescent x-rays from several different test metal samples were imaged through the newly developed coded aperture imaging system. By choice of the exciting energy the different metals were speciated.

  7. Directional binary wavelet patterns for biomedical image indexing and retrieval.

    Science.gov (United States)

    Murala, Subrahmanyam; Maheshwari, R P; Balasubramanian, R

    2012-10-01

    A new algorithm for medical image retrieval is presented in the paper. An 8-bit grayscale image is divided into eight binary bit-planes, and then binary wavelet transform (BWT) which is similar to the lifting scheme in real wavelet transform (RWT) is performed on each bitplane to extract the multi-resolution binary images. The local binary pattern (LBP) features are extracted from the resultant BWT sub-bands. Three experiments have been carried out for proving the effectiveness of the proposed algorithm. Out of which two are meant for medical image retrieval and one for face retrieval. It is further mentioned that the database considered for three experiments are OASIS magnetic resonance imaging (MRI) database, NEMA computer tomography (CT) database and PolyU-NIRFD face database. The results after investigation shows a significant improvement in terms of their evaluation measures as compared to LBP and LBP with Gabor transform.

  8. Performance of a novel wafer scale CMOS active pixel sensor for bio-medical imaging

    OpenAIRE

    Esposito, M.; Anaxagoras, T; Konstantinidis, AC; Zheng, Y.; Speller, RD; Evans, PM; Allinson, NM; Wells, K

    2014-01-01

    Recently CMOS Active Pixels Sensors (APSs) have become a valuable alternative to amorphous Silicon and Selenium Flat Panel Imagers (FPIs) in bio-medical imaging applications. CMOS APSs can now be scaled up to the standard 20 cm diameter wafer size by means of a reticle stitching block process. However despite wafer scale CMOS APS being monolithic, sources of non-uniformity of response and regional variations can persist representing a significant challenge for wafer scale sensor response. Non...

  9. Optically detected magnetic resonance imaging

    International Nuclear Information System (INIS)

    Optically detected magnetic resonance provides ultrasensitive means to detect and image a small number of electron and nuclear spins, down to the single spin level with nanoscale resolution. Despite the significant recent progress in this field, it has never been combined with the power of pulsed magnetic resonance imaging techniques. Here, we demonstrate how these two methodologies can be integrated using short pulsed magnetic field gradients to spatially encode the sample. This result in what we denote as an 'optically detected magnetic resonance imaging' technique. It offers the advantage that the image is acquired in parallel from all parts of the sample, with well-defined three-dimensional point-spread function, and without any loss of spectroscopic information. In addition, this approach may be used in the future for parallel but yet spatially selective efficient addressing and manipulation of the spins in the sample. Such capabilities are of fundamental importance in the field of quantum spin-based devices and sensors

  10. Interactive histology of large-scale biomedical image stacks.

    Science.gov (United States)

    Jeong, Won-Ki; Schneider, Jens; Turney, Stephen G; Faulkner-Jones, Beverly E; Meyer, Dominik; Westermann, Rüdiger; Reid, R Clay; Lichtman, Jeff; Pfister, Hanspeter

    2010-01-01

    Histology is the study of the structure of biological tissue using microscopy techniques. As digital imaging technology advances, high resolution microscopy of large tissue volumes is becoming feasible; however, new interactive tools are needed to explore and analyze the enormous datasets. In this paper we present a visualization framework that specifically targets interactive examination of arbitrarily large image stacks. Our framework is built upon two core techniques: display-aware processing and GPU-accelerated texture compression. With display-aware processing, only the currently visible image tiles are fetched and aligned on-the-fly, reducing memory bandwidth and minimizing the need for time-consuming global pre-processing. Our novel texture compression scheme for GPUs is tailored for quick browsing of image stacks. We evaluate the usability of our viewer for two histology applications: digital pathology and visualization of neural structure at nanoscale-resolution in serial electron micrographs.

  11. New Windows based Color Morphological Operators for Biomedical Image Processing

    Science.gov (United States)

    Pastore, Juan; Bouchet, Agustina; Brun, Marcel; Ballarin, Virginia

    2016-04-01

    Morphological image processing is well known as an efficient methodology for image processing and computer vision. With the wide use of color in many areas, the interest on the color perception and processing has been growing rapidly. Many models have been proposed to extend morphological operators to the field of color images, dealing with some new problems not present previously in the binary and gray level contexts. These solutions usually deal with the lattice structure of the color space, or provide it with total orders, to be able to define basic operators with required properties. In this work we propose a new locally defined ordering, in the context of window based morphological operators, for the definition of erosions-like and dilation-like operators, which provides the same desired properties expected from color morphology, avoiding some of the drawbacks of the prior approaches. Experimental results show that the proposed color operators can be efficiently used for color image processing.

  12. Image-based Informatics for Preclinical Biomedical Research

    Energy Technology Data Exchange (ETDEWEB)

    Tobin Jr, Kenneth William [ORNL; Aykac, Deniz [ORNL; Muthusamy Govindasamy, Vijaya Priya [ORNL; Karnowski, Thomas Paul [ORNL; Price, Jeffery R [ORNL; Wall, Jonathan [ORNL; Gregor, Jens [ORNL; Gleason, Shaun Scott [ORNL

    2006-01-01

    In 2006, the New England Journal of Medicine selected medical imaging as one of the eleven most important innovations of the past 1,000 years, primarily due to its ability to allow physicians and researchers to visualize the very nature of disease. As a result of the broad-based adoption of micro imaging technologies, preclinical researchers today are generating terabytes of image data from both anatomic and functional imaging modes. In this paper we describe our early research to apply content-based image retrieval to index and manage large image libraries generated in the study of amyloid disease in mice. Amyloidosis is associated with diseases such as Alzheimer's, type 2 diabetes, chronic inflammation and myeloma. In particular, we will focus on results to date in the area of small animal organ segmentation and description for CT, SPECT, and PET modes and present a small set of preliminary retrieval results for a specific disease state in kidney CT crosssections.

  13. Progress of MEMS Scanning Micromirrors for Optical Bio-Imaging

    Directory of Open Access Journals (Sweden)

    Lih Y. Lin

    2015-11-01

    Full Text Available Microelectromechanical systems (MEMS have an unmatched ability to incorporate numerous functionalities into ultra-compact devices, and due to their versatility and miniaturization, MEMS have become an important cornerstone in biomedical and endoscopic imaging research. To incorporate MEMS into such applications, it is critical to understand underlying architectures involving choices in actuation mechanism, including the more common electrothermal, electrostatic, electromagnetic, and piezoelectric approaches, reviewed in this paper. Each has benefits and tradeoffs and is better suited for particular applications or imaging schemes due to achievable scan ranges, power requirements, speed, and size. Many of these characteristics are fabrication-process dependent, and this paper discusses various fabrication flows developed to integrate additional optical functionality beyond simple lateral scanning, enabling dynamic control of the focus or mirror surface. Out of this provided MEMS flexibility arises some challenges when obtaining high resolution images: due to scanning non-linearities, calibration of MEMS scanners may become critical, and inherent image artifacts or distortions during scanning can degrade image quality. Several reviewed methods and algorithms have been proposed to address these complications from MEMS scanning. Given their impact and promise, great effort and progress have been made toward integrating MEMS and biomedical imaging.

  14. Fundamental and applied studies in nanoparticle biomedical imaging, stabilization, and processing

    Science.gov (United States)

    Pansare, Vikram J.

    Nanoparticle carrier systems are gaining importance in the rapidly expanding field of biomedical whole animal imaging where they provide long circulating, real time imaging capability. This thesis presents a new paradigm in imaging whereby long wavelength fluorescent or photoacoustically active contrast agents are embedded in the hydrophobic core of nanocarriers formed by Flash NanoPrecipitation. The long wavelength allows for improved optical penetration depth. Compared to traditional contrast agents where fluorophores are placed on the surface, this allows for improved signal, increased stability, and molecular targeting capabilities. Several types of long wavelength hydrophobic dyes based on acene, cyanine, and bacteriochlorin scaffolds are utilized and animal results obtained for nanocarrier systems used in both fluorescent and photoacoustic imaging modes. Photoacoustic imaging is particularly promising due to its high resolution, excellent penetration depth, and ability to provide real-time functional information. Fundamental studies in nanoparticle stabilization are also presented for two systems: model alumina nanoparticles and charge stabilized polystyrene nanoparticles. Motivated by the need for stable suspensions of alumina-based nanocrystals for security printing applications, results are presented for the adsorption of various small molecule charged hydrophobes onto the surface of alumina nanoparticles. Results are also presented for the production of charge stabilized polystyrene nanoparticles via Flash NanoPrecipitation, allowing for the independent control of polymer molecular weight and nanoparticle size, which is not possible by traditional emulsion polymerization routes. Lastly, methods for processing nanoparticle systems are explored. The increasing use of nanoparticle therapeutics in the pharmaceutical industry has necessitated the development of scalable, industrially relevant processing methods. Ultrafiltration is particularly well suited for

  15. PEGylated gold nanorods as optical trackers for biomedical applications: an in vivo and in vitro comparative study

    Science.gov (United States)

    Abdelrasoul, Gaser N.; Magrassi, Raffaella; Dante, Silvia; d’Amora, Marta; Scotto d’Abbusco, Marco; Pellegrino, Teresa; Diaspro, Alberto

    2016-06-01

    Gold nanorods (AuNRs) are eligible for a variety of biological applications including cell imaging, sensing, and photothermal therapy thanks to their optical properties. The aim of this work is to show how AuNRs could be employed as non-photobleachable optical contrast agents for biomedical applications. In order to demonstrate the feasibility of their use as optical trackers, we employed two-photon emission confocal microscopy on cells incubated with PEGylated AuNRs. Remarkably, AuNRs were localized mostly in the perinuclear zone and microscopy characterization showed the presence of a considerable number of rods inside cell nuclei. Furthermore, we estimated the toxicity and the efficiency of cellular uptake of the PEGylated AuNRs as a function of administered dose on HeLa/3T3 cell lines and on zebrafish during development, employed as an in vivo model. Eventually, we observed good agreement between in vivo and in vitro experiments. The employed AuNRs were prepared through a photochemical protocol here improved by tuning the amount of the cationic surfactant cetyltrimethylammonium bromide for the achievement of AuNRs at two different aspect ratios. Furthermore we also investigated if the AuNR aspect ratio influenced the toxicity and the efficiency of cellular uptake of the PEGylated AuNRs in HeLa/3T3 cell lines and in zebrafish embryos.

  16. PEGylated gold nanorods as optical trackers for biomedical applications: an in vivo and in vitro comparative study.

    Science.gov (United States)

    Abdelrasoul, Gaser N; Magrassi, Raffaella; Dante, Silvia; d'Amora, Marta; d'Abbusco, Marco Scotto; Pellegrino, Teresa; Diaspro, Alberto

    2016-06-24

    Gold nanorods (AuNRs) are eligible for a variety of biological applications including cell imaging, sensing, and photothermal therapy thanks to their optical properties. The aim of this work is to show how AuNRs could be employed as non-photobleachable optical contrast agents for biomedical applications. In order to demonstrate the feasibility of their use as optical trackers, we employed two-photon emission confocal microscopy on cells incubated with PEGylated AuNRs. Remarkably, AuNRs were localized mostly in the perinuclear zone and microscopy characterization showed the presence of a considerable number of rods inside cell nuclei. Furthermore, we estimated the toxicity and the efficiency of cellular uptake of the PEGylated AuNRs as a function of administered dose on HeLa/3T3 cell lines and on zebrafish during development, employed as an in vivo model. Eventually, we observed good agreement between in vivo and in vitro experiments. The employed AuNRs were prepared through a photochemical protocol here improved by tuning the amount of the cationic surfactant cetyltrimethylammonium bromide for the achievement of AuNRs at two different aspect ratios. Furthermore we also investigated if the AuNR aspect ratio influenced the toxicity and the efficiency of cellular uptake of the PEGylated AuNRs in HeLa/3T3 cell lines and in zebrafish embryos. PMID:27176116

  17. Nanoscale metal-organic frameworks for biomedical imaging and drug delivery.

    Science.gov (United States)

    Della Rocca, Joseph; Liu, Demin; Lin, Wenbin

    2011-10-18

    Metal-organic frameworks (MOFs), a class of hybrid materials formed by the self-assembly of polydentate bridging ligands and metal-connecting points, have been studied for a variety of applications. Recently, these materials have been scaled down to nanometer sizes, and this Account details the development of nanoscale metal-organic frameworks (NMOFs) for biomedical applications. NMOFs possess several potential advantages over conventional nanomedicines such as their structural and chemical diversity, their high loading capacity, and their intrinsic biodegradability. Under relatively mild conditions, NMOFs can be obtained as either crystalline or amorphous materials. The particle composition, size, and morphology can be easily tuned to optimize the final particle properties. Researchers have employed two general strategies to deliver active agents using NMOFs: by incorporating active agents into the frameworks or by loading active agents into the pores and channels of the NMOFs. The modification of NMOF surfaces with either silica coatings or organic polymers improves NMOF stability, fine-tunes their properties, and imparts additional functionality. Preliminary biomedical applications of NMOFs have focused on their use as delivery vehicles for imaging contrast agents and molecular therapeutics. Because NMOFs can carry large amounts of paramagnetic metal ions, they have been extensively explored as magnetic resonance imaging (MRI) contrast agents. Both Gd(3+)- and Mn(2+)-containing NMOFs have shown excellent efficacy as T(1)-weighted contrast agents with large per metal- and per particle-based MR relaxivities. Fe(3+)-containing NMOFs have demonstrated excellent T(2)-weighted contrast enhancement. Upon intravenous injection of iron carboxylate NMOFs in Wistar rats, researchers observed negative signal enhancement in the liver and spleen, which dissipated over time, indicating the degradation and clearance of the NMOF. Through the incorporation of luminescent or high

  18. A THz heterodyne instrument for biomedical imaging applications

    Science.gov (United States)

    Siegel, Peter H.

    2004-01-01

    An ultra-wide-dynamic-range heterodyne imaging system operating at 2.5 THz is described. The instrument employs room temperature Schottky barrier diode mixers and far infrared gas laser sources developed for NASA space applications. A dynamic range of over 100dB at fixed intermediate frequencies has been realized. Amplitude/phase tracking circuitry results in stability of 0.02 dB and +-2 degrees of phase. The system is being employed to characterize biological (human and animal derived tissues) and a variety of materials of interest to NASA. This talk will describe the instrument and some of the early imaging experiments on everything from mouse tail to aerogel.

  19. Biomedical Image Processing with Morphology and Segmentation Methods for Medical Image Analysis

    Directory of Open Access Journals (Sweden)

    Joyjit Patra

    2013-07-01

    of morphological filters eliminate the bias of the standard filters, while the value-and-criterion filters allow a American Journal of Engineering Research (AJER 2013w w w . a j e r . o r g Page 228variety of linear and nonlinear operations to be used in the geometric structure of morphology. One important value-and-criterion filter is the Mean of Least Variance (MLV filter, which sharpens edges and provides noise smoothing equivalent to linear filtering. To help understand the behavior of the new filters, the deterministic and statistical properties of the filters are derived and compared to the properties of the standard morphological filters. In addition, new analysis techniques for nonlinear filters are introduced that describe the behavior of filters in the presence of rapidly fluctuating signals, impulsive noise, and corners. The corner response analysis is especially informative because it quantifies the degree to which a filter preserves corners of all angles.Examples of the new nonlinear filtering techniques are given for a variety of medical images, including thermographic, magnetic resonance, and ultrasound images. The results of the filter analyses are important in deciding which filter to use for a particular application. For thermography, accurate gray level estimation is required, so linear combinations of morphological operators are appropriate. In magnetic resonance imaging (MRI, noise reduction and contrast enhancement are desired. The MLV filter performs these tasks well on MR images. The new filters perform as well or better than previously established techniques for biomedical image enhancement in these applications.

  20. [The modern body image as ethical device for biomedical enhancement].

    Science.gov (United States)

    Breitsameter, C

    2013-01-01

    Ovid's "De medicamine faciei feminae" contains the astonishing sentence "Culta placent - all that is artificial is beautiful". In his "Éloge du maquillage" Baudelaire, buidling on Ovid's argument, states that first culture as picture and construction of beauty brings forth the truth of Nature and claims that cosmetics that allow errors of beauty to disappear artificially produce the true fulfillment of human nature. The present article looks into the historical roots of the body images that have emerged in modern times and attempts to derive structural devices for an ethical assessment of the potential we have to enhance human nature.

  1. Section on High Resolution Optical Imaging (HROI)

    Data.gov (United States)

    Federal Laboratory Consortium — The Section on High Resolution Optical Imaging (HROI) develops novel technologies for studying biological processes at unprecedented speed and resolution. Research...

  2. Local mesh patterns versus local binary patterns: biomedical image indexing and retrieval.

    Science.gov (United States)

    Murala, Subrahmanyam; Wu, Q M Jonathan

    2014-05-01

    In this paper, a new image indexing and retrieval algorithm using local mesh patterns are proposed for biomedical image retrieval application. The standard local binary pattern encodes the relationship between the referenced pixel and its surrounding neighbors, whereas the proposed method encodes the relationship among the surrounding neighbors for a given referenced pixel in an image. The possible relationships among the surrounding neighbors are depending on the number of neighbors, P. In addition, the effectiveness of our algorithm is confirmed by combining it with the Gabor transform. To prove the effectiveness of our algorithm, three experiments have been carried out on three different biomedical image databases. Out of which two are meant for computer tomography (CT) and one for magnetic resonance (MR) image retrieval. It is further mentioned that the database considered for three experiments are OASIS-MRI database, NEMA-CT database, and VIA/I-ELCAP database which includes region of interest CT images. The results after being investigated show a significant improvement in terms of their evaluation measures as compared to LBP, LBP with Gabor transform, and other spatial and transform domain methods.

  3. Effect of surface coating of KYb2F7:Tm3+ on optical properties and biomedical applications

    Science.gov (United States)

    Pedraza, Francisco J.; Avalos, Julio C.; Yust, Brian G.; Tsin, Andrew; Sardar, Dhiraj K.

    2016-09-01

    This project aims to provide an insight on the effects of biocompatible polymers on the optical properties and the nanoparticle-cell interaction of KYb2F7:Tm3+ nanocrystals that exhibit strong near infrared (NIR) fluorescence. KYb2F7:Tm3+ nanocrystals were synthesized with a diameter of 20-30 nm and surface modified with poly(ethylene glycol), Pluronic® F-127, and poly(N-vinylpyrrolidone), due to the associated advantages. Some of these include biocompatibility and biodistribution in the instance of agglomeration and hydrophobicity as well as the addition of a targeting agent and drug loading by further functionalization. Despite the decrease in fluorescence intensity induced by the surface modification, thulium’s emission fingerprint was easily detected. Moreover, surface modified KYb2F7:Tm3+ nanocrystals failed to induce a toxic response on endothelial cells following a 24 h uptake period up to concentrations of 100 μg ml-1. In vitro toxicity and confocal imaging have demonstrated the versatility of these NIR fluorescence nanocrystals in biomedical imaging, drug delivery, and photodynamic therapy.

  4. Effect of surface coating of KYb2F7:Tm(3+) on optical properties and biomedical applications.

    Science.gov (United States)

    Pedraza, Francisco J; Avalos, Julio C; Yust, Brian G; Tsin, Andrew; Sardar, Dhiraj K

    2016-09-23

    This project aims to provide an insight on the effects of biocompatible polymers on the optical properties and the nanoparticle-cell interaction of KYb2F7:Tm(3+) nanocrystals that exhibit strong near infrared (NIR) fluorescence. KYb2F7:Tm(3+) nanocrystals were synthesized with a diameter of 20-30 nm and surface modified with poly(ethylene glycol), Pluronic(®) F-127, and poly(N-vinylpyrrolidone), due to the associated advantages. Some of these include biocompatibility and biodistribution in the instance of agglomeration and hydrophobicity as well as the addition of a targeting agent and drug loading by further functionalization. Despite the decrease in fluorescence intensity induced by the surface modification, thulium's emission fingerprint was easily detected. Moreover, surface modified KYb2F7:Tm(3+) nanocrystals failed to induce a toxic response on endothelial cells following a 24 h uptake period up to concentrations of 100 μg ml(-1). In vitro toxicity and confocal imaging have demonstrated the versatility of these NIR fluorescence nanocrystals in biomedical imaging, drug delivery, and photodynamic therapy. PMID:27518385

  5. Phase-preserving beam expander for biomedical X-ray imaging

    International Nuclear Information System (INIS)

    Building on previous work, a phase-preserving bent Laue beam-expanding monochromator was developed with the capability of performing live animal phase contrast dynamic imaging at the Biomedical Imaging and Therapy beamline at the Canadian Light Source. The BioMedical Imaging and Therapy beamlines at the Canadian Light Source are used by many researchers to capture phase-based imaging data. These experiments have so far been limited by the small vertical beam size, requiring vertical scanning of biological samples in order to image their full vertical extent. Previous work has been carried out to develop a bent Laue beam-expanding monochromator for use at these beamlines. However, the first attempts exhibited significant distortion in the diffraction plane, increasing the beam divergence and eliminating the usefulness of the monochromator for phase-related imaging techniques. Recent work has been carried out to more carefully match the polychromatic and geometric focal lengths in a so-called ‘magic condition’ that preserves the divergence of the beam and enables full-field phase-based imaging techniques. The new experimental parameters, namely asymmetry and Bragg angles, were evaluated by analysing knife-edge and in-line phase images to determine the effect on beam divergence in both vertical and horizontal directions, using the flat Bragg double-crystal monochromator at the beamline as a baseline. The results show that by using the magic condition, the difference between the two monochromator types is less than 10% in the diffraction plane. Phase fringes visible in test images of a biological sample demonstrate that this difference is small enough to enable in-line phase imaging, despite operating at a sub-optimal energy for the wafer and asymmetry angle that was used

  6. Phase-preserving beam expander for biomedical X-ray imaging

    Energy Technology Data Exchange (ETDEWEB)

    Martinson, Mercedes, E-mail: mercedes.m@usask.ca [University of Saskatchewan, 116 Science Place, Rm 163, Saskatoon, Saskatchewan (Canada); Samadi, Nazanin [University of Saskatchewan, 107 Wiggins Road, Saskatoon, Saskatchewan (Canada); Bassey, Bassey [University of Saskatchewan, 116 Science Place, Rm 163, Saskatoon, Saskatchewan (Canada); Gomez, Ariel [Canadian Light Source, 44 Innovation Boulevard, Saskatoon, Saskatchewan (Canada); Chapman, Dean [University of Saskatchewan, 107 Wiggins Road, Saskatoon, Saskatchewan (Canada); University of Saskatchewan, 116 Science Place, Rm 163, Saskatoon, Saskatchewan (Canada)

    2015-04-15

    Building on previous work, a phase-preserving bent Laue beam-expanding monochromator was developed with the capability of performing live animal phase contrast dynamic imaging at the Biomedical Imaging and Therapy beamline at the Canadian Light Source. The BioMedical Imaging and Therapy beamlines at the Canadian Light Source are used by many researchers to capture phase-based imaging data. These experiments have so far been limited by the small vertical beam size, requiring vertical scanning of biological samples in order to image their full vertical extent. Previous work has been carried out to develop a bent Laue beam-expanding monochromator for use at these beamlines. However, the first attempts exhibited significant distortion in the diffraction plane, increasing the beam divergence and eliminating the usefulness of the monochromator for phase-related imaging techniques. Recent work has been carried out to more carefully match the polychromatic and geometric focal lengths in a so-called ‘magic condition’ that preserves the divergence of the beam and enables full-field phase-based imaging techniques. The new experimental parameters, namely asymmetry and Bragg angles, were evaluated by analysing knife-edge and in-line phase images to determine the effect on beam divergence in both vertical and horizontal directions, using the flat Bragg double-crystal monochromator at the beamline as a baseline. The results show that by using the magic condition, the difference between the two monochromator types is less than 10% in the diffraction plane. Phase fringes visible in test images of a biological sample demonstrate that this difference is small enough to enable in-line phase imaging, despite operating at a sub-optimal energy for the wafer and asymmetry angle that was used.

  7. Wavelet-domain de-noising of optical coherent tomography data for biomedical applications

    International Nuclear Information System (INIS)

    Optical coherent tomography (OCT) is a rapidly developing method of fundamental and applied research. Detection and processing of OCT images is a very important problem of applied physics and optical signal processing. In the present paper we are demonstrating the ability for effective wavelet-domain de-noising of OCT images. We are realizing an algorithm for wavelet-domain de-noising of OCT data and implementing it for the purpose of studying test samples and for in vivo nail tomography. High de-noising efficiency with no significant losses of information about the internal sample structure is observed

  8. Imaging granulomatous lesions with optical coherence tomography

    DEFF Research Database (Denmark)

    Banzhaf, Christina; Jemec, Gregor B E

    2012-01-01

    To investigate and compare the presentation of granulomatous lesions in optical coherence tomography (OCT) images and compare this to previous studies of nonmelanoma skin tumors.......To investigate and compare the presentation of granulomatous lesions in optical coherence tomography (OCT) images and compare this to previous studies of nonmelanoma skin tumors....

  9. Optical coherence tomography—current technology and applications in clinical and biomedical research

    DEFF Research Database (Denmark)

    Marschall, Sebastian; Sander, Birgit; Mogensen, Mette;

    2011-01-01

    Optical coherence tomography (OCT) is a noninvasive imaging technique that provides real-time two- and three-dimensional images of scattering samples with micrometer resolution. By mapping the local reflectivity, OCT visualizes the morphology of the sample. In addition, functional properties such...... biology. The number of companies involved in manufacturing OCT systems has increased substantially during the last few years (especially due to its success in opthalmology), and this technology can be expected to continue to spread into various fields of application....

  10. Optical scatter imaging using digital Fourier microscopy

    CERN Document Server

    Seet, K Y T; Meredith, P; Zvyagin, A V

    2007-01-01

    An approach reported recently by Alexandrov et al. on optical scatter imaging, termed digital Fourier microscopy (DFM), represents an adaptation of digital Fourier holography to selective imaging of biological matter. Holographic mode of recording of the sample optical scatter enables reconstruction of the sample image. Form-factor of the sample constituents provides a basis for discrimination of these constituents implemented via flexible digital Fourier filtering at the post processing stage. Like in the dark-field microscopy, the DFM image contrast appears to improve due to the suppressed optical scatter from extended sample structures. In this paper, we present theoretical and experimental study of DFM using biological phantom that contains polymorphic scatterers.

  11. Hot topics in biomedical ultrasound: ultrasound therapy and its integration with ultrasonic imaging

    Science.gov (United States)

    Everbach, E. Carr

    2005-09-01

    Since the development of biomedical ultrasound imaging from sonar after WWII, there has been a clear divide between ultrasonic imaging and ultrasound therapy. While imaging techniques are designed to cause as little change as possible in the tissues through which ultrasound propagates, ultrasound therapy typically relies upon heating or acoustic cavitation to produce a desirable therapeutic effect. Concerns over the increasingly high acoustic outputs of diagnostic ultrasound scanners prompted the adoption of the Mechanical Index (MI) and Thermal Index (TI) in the early 1990s. Therapeutic applications of ultrasound, meanwhile, have evolved from deep tissue heating in sports medicine to include targeted drug delivery, tumor and plaque ablation, cauterization via high intensity focused ultrasound (HIFU), and accelerated dissolution of blood clots. The integration of ultrasonic imaging and therapy in one device is just beginning, but the promise of improved patient outcomes is balanced by regulatory and practical impediments.

  12. Minimizing the semantic gap in biomedical content-based image retrieval

    Science.gov (United States)

    Guan, Haiying; Antani, Sameer; Long, L. Rodney; Thoma, George R.

    2010-03-01

    A major challenge in biomedical Content-Based Image Retrieval (CBIR) is to achieve meaningful mappings that minimize the semantic gap between the high-level biomedical semantic concepts and the low-level visual features in images. This paper presents a comprehensive learning-based scheme toward meeting this challenge and improving retrieval quality. The article presents two algorithms: a learning-based feature selection and fusion algorithm and the Ranking Support Vector Machine (Ranking SVM) algorithm. The feature selection algorithm aims to select 'good' features and fuse them using different similarity measurements to provide a better representation of the high-level concepts with the low-level image features. Ranking SVM is applied to learn the retrieval rank function and associate the selected low-level features with query concepts, given the ground-truth ranking of the training samples. The proposed scheme addresses four major issues in CBIR to improve the retrieval accuracy: image feature extraction, selection and fusion, similarity measurements, the association of the low-level features with high-level concepts, and the generation of the rank function to support high-level semantic image retrieval. It models the relationship between semantic concepts and image features, and enables retrieval at the semantic level. We apply it to the problem of vertebra shape retrieval from a digitized spine x-ray image set collected by the second National Health and Nutrition Examination Survey (NHANES II). The experimental results show an improvement of up to 41.92% in the mean average precision (MAP) over conventional image similarity computation methods.

  13. Development of highly luminescent and water-dispersible lanthanide-based nanomaterials for potential bio-medical imaging

    Science.gov (United States)

    Attanayake, Gayanthi Kumari

    Lanthanide metal ions exhibit fascinating optical and magnetic properties. Lanthanide-based nanomaterials have potential applications in optical devices, telecommunication, electroluminescent devices, bio-analytical sensors, and bio-medical imaging technology. Despite the recent developments, low luminescence characteristics, poor water solubility, and poor cell selectivity of lanthanide-based materials limit their use in bio-medical applications. This project is designed to mainly improve the luminescence properties of Eu(III)-based nanomaterials for their potential use in biomedical applications. In addition, we explore synthetic methods to enhance the water dispersibility and melanoma cell selectivity of the nanoparticles. Current research is designed to address the above mentioned drawbacks of lanthanide-based nanomaterials. Two different nanoparticle systems were developed in this project. i. europium (Eu)-based down-converting nanoparticles, ii. ytterbium (Yb)- erbium (Er)-based upconverting nanoparticles. Many down-converting nanoparticle systems suffer from low-luminescence efficiencies due to their poor light absorption by direct excitation of the lanthanide ions. In order to improve the luminescence characteristics, we have designed a novel nanomaterial by surface-coating it with organic chromophores having strong light absorption properties. LaEuF3.AEP (La=lanthanum, AEP = aminoethyl phosphate) nanoparticles were successfully synthesized using a low temperature heating method and Eu-based NaYF4 nanoparticles were synthesized using a high temperature heating method. A ligand exchange procedure was developed to functionalize the surface of the nanoparticles with an organic chromophore, TTA (thenoyltrifluoroacetone). The TTA functionalized Eu(III)-based nanoparticles exhibit impressive luminescence enhancements utilizing the sensitization effect. Poor water solubility is the main drawback of the upconverting nanoparticles for bio-medical applications. We

  14. Testing of electro-optical imaging systems

    Science.gov (United States)

    Chrzanowski, Krzysztof; Barela, Jaroslaw; Firmanty, Krzysztof

    2004-08-01

    Humans cannot objectively judge electro-optical imaging systems looking on an image of typical scenery. Quality of the image can be bad for some people but good for others and therefore objective test methods and advanced equipment are needed to evaluate these imaging systems. Test methods and measuring systems that enable reliable testing and evaluation of modern thermal cameras, color and monochrome TV cameras, LLLTV cameras and image intensifier systems are presented in this paper.

  15. Handbook of coherent domain optical methods biomedical diagnostics, environmental and material science

    CERN Document Server

    2004-01-01

    For the first time in one set of books, coherent-domain optical methods are discussed in the framework of various applications, which are characterized by a strong light scattering. A few chapters describe basic research containing the updated results on coherent and polarized light non-destructive interactions with a scattering medium, in particular, diffraction, interference, and speckle formation at multiple scattering. These chapters allow for understanding coherent-domain diagnostic techniques presented in later chapters. A large portion of Volume I is dedicated to analysis of various aspects of optical coherence tomography (OCT) - a very new and growing field of coherent optics. Two chapters on laser scanning confocal microscopy give insight to recent extraordinary results on in vivo imaging and compare the possibilities and achievements of confocol, excitation multiphoton, and OCT microscopy. This two volume reference contains descriptions of holography, interferometry and optical heterodyning techniqu...

  16. Optical design for LED dental lighting with imaging optic technique

    Science.gov (United States)

    Kwon, Young-Hoon; Bae, Seung-Chul; Lim, Hae-Ryong; Jang, Ja-Soon

    2011-10-01

    We did a research as follows. First of all, selected optimum LEDs and mixed it for higher CRI, target CCT and illuminance. The following step is optical module design. Light directional characteristics of dental lighting must be concentrated to illuminate a part. Because This part is oral cavity, The feature of illumination pattern is rectangular. For uniformity of illuminance and clearer pattern boundary at reference distance, we designed it as direct type (no use reflector) by imaging optic technique. First, Image is rectangular feature, so object must be the same feature with magnification in general imaging optics. But the emitting surface feature of LED (1W grade) is square or circular generally. For that reason, made object as rectangular source with rectangular lightguide. This optical component was designed for higher efficiency by illumination optic technique. Next, we designed optical lenses based on imaging optic technique for image object feature using Code V. set to high NA for light efficiency in this design. Fundamentally, Finally, This product is luminaire so illumination simulation and result analysis were executed by LightTools as illumination design software.

  17. Image correction in magneto-optical microscopy

    DEFF Research Database (Denmark)

    Paturi, P.; Larsen, B.H.; Jacobsen, B.A.;

    2003-01-01

    An image-processing procedure that assures correct determination of the magnetic field distribution of magneto-optical images is presented. The method remedies image faults resulting from sources that are proportional to the incident light intensity, such as different types of defects in the indi...

  18. Optics for Advanced Neutron Imaging and Scattering

    Energy Technology Data Exchange (ETDEWEB)

    Moncton, David E. [Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States); Khaykovich, Boris [Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States)

    2016-03-30

    During the report period, we continued the work as outlined in the original proposal. We have analyzed potential optical designs of Wolter mirrors for the neutron-imaging instrument VENUS, which is under construction at SNS. In parallel, we have conducted the initial polarized imaging experiment at Helmholtz Zentrum, Berlin, one of very few of currently available polarized-imaging facilities worldwide.

  19. An inventory of biomedical imaging physics elements-of-competence for diagnostic radiography education in Europe

    International Nuclear Information System (INIS)

    Purpose: To develop an inventory of biomedical physics elements-of-competence for diagnostic radiography education in Europe. Method: Research articles in the English literature and UK documentation pertinent to radiography education, competences and role development were subjected to a rigorous analysis of content from a functional and competence analysis perspective. Translations of radiography curricula from across Europe and relevant EU legislation were likewise analysed to ensure a pan-European perspective. Broad Subject Specific Competences for diagnostic radiography that included major biomedical physics components were singled out. These competences were in turn carefully deconstructed into specific elements-of-competence and those elements falling within the biomedical physics learning domain inventorised. A pilot version of the inventory was evaluated by participants during a meeting of the Higher Education Network for Radiography in Europe (HENRE), held in Marsascala, Malta, in November 2004. The inventory was further refined taking into consideration suggestions by HENRE members and scientific, professional and educational developments. Findings: The evaluation of the pilot inventory was very positive and indicated that the overall structure of the inventory was sensible, easily understood and acceptable - hence a good foundation for further development. Conclusions: Use of the inventory by radiography programme leaders and biomedical physics educators would guarantee that all necessary physics elements-of-competence underpinning the safe, effective and economical use of imaging devices are included within radiography curricula. It will also ensure the relevancy of physics content within radiography education. The inventory is designed to be a pragmatic tool for curriculum development across the entire range of radiography education up to doctorate level and irrespective of whether curriculum delivery is discipline-based or integrated, presentation

  20. Biomedical image and signal de-noising using dual tree complex wavelet transform

    Science.gov (United States)

    Rizi, F. Yousefi; Noubari, H. Ahmadi; Setarehdan, S. K.

    2011-10-01

    Dual tree complex wavelet transform(DTCWT) is a form of discrete wavelet transform, which generates complex coefficients by using a dual tree of wavelet filters to obtain their real and imaginary parts. The purposes of de-noising are reducing noise level and improving signal to noise ratio (SNR) without distorting the signal or image. This paper proposes a method for removing white Gaussian noise from ECG signals and biomedical images. The discrete wavelet transform (DWT) is very valuable in a large scope of de-noising problems. However, it has limitations such as oscillations of the coefficients at a singularity, lack of directional selectivity in higher dimensions, aliasing and consequent shift variance. The complex wavelet transform CWT strategy that we focus on in this paper is Kingsbury's and Selesnick's dual tree CWT (DTCWT) which outperforms the critically decimated DWT in a range of applications, such as de-noising. Each complex wavelet is oriented along one of six possible directions, and the magnitude of each complex wavelet has a smooth bell-shape. In the final part of this paper, we present biomedical image and signal de-noising by the means of thresholding magnitude of the wavelet coefficients.

  1. Phase-preserving beam expander for biomedical X-ray imaging.

    Science.gov (United States)

    Martinson, Mercedes; Samadi, Nazanin; Bassey, Bassey; Gomez, Ariel; Chapman, Dean

    2015-05-01

    The BioMedical Imaging and Therapy beamlines at the Canadian Light Source are used by many researchers to capture phase-based imaging data. These experiments have so far been limited by the small vertical beam size, requiring vertical scanning of biological samples in order to image their full vertical extent. Previous work has been carried out to develop a bent Laue beam-expanding monochromator for use at these beamlines. However, the first attempts exhibited significant distortion in the diffraction plane, increasing the beam divergence and eliminating the usefulness of the monochromator for phase-related imaging techniques. Recent work has been carried out to more carefully match the polychromatic and geometric focal lengths in a so-called `magic condition' that preserves the divergence of the beam and enables full-field phase-based imaging techniques. The new experimental parameters, namely asymmetry and Bragg angles, were evaluated by analysing knife-edge and in-line phase images to determine the effect on beam divergence in both vertical and horizontal directions, using the flat Bragg double-crystal monochromator at the beamline as a baseline. The results show that by using the magic condition, the difference between the two monochromator types is less than 10% in the diffraction plane. Phase fringes visible in test images of a biological sample demonstrate that this difference is small enough to enable in-line phase imaging, despite operating at a sub-optimal energy for the wafer and asymmetry angle that was used. PMID:25931100

  2. A bidimensional xenon-filled MWPC X-ray imaging detector for biomedical applications

    International Nuclear Information System (INIS)

    The X-ray imaging system developed at the Rutherford Laboratory for biomedical applications is described. It consists of a bidimensional, xenon-filled MWPC operating at NTP, and capable of detecting x-rays of energies up to approximately 50 keV. The chamber data is processed in a PDP-11 computer which is capable of storing and processing the x-ray images so as to provide good pictures of biological structures with a spatial resolution of approximately 2mm. Special attention has been paid to an application in the field of x-ray absorptiometry using monochromatic x-rays of approximately 42 keV and promising results are being obtained. Other potential applications are discussed. Particular attention is drawn to the usefulness of pulse height selection in improving the spatial resolution and imaging capability of an atmospheric pressure MWPC x-ray detector. (author)

  3. NAOMI: nanoparticle-assisted optical molecular imaging

    Science.gov (United States)

    Faber, Dirk J.; de Bruin, Martijn; Aalders, Maurice C. G.; Verbraak, Frank D.; van Leeuwen, Ton G.

    2007-02-01

    We present our first steps towards nanoparticle assisted, optical molecular imaging (NAOMI) using biodegradable nanoparticles. Our focus is on using optical coherence tomography(OCT) as the imaging modality. We propose to use nanoparticles based on biodegradable polymers, loaded with carefully selected dyes as contrast agent, and outline a method for establishing their desired optical properties prior to synthesis. Moreover, we perform a qualitative pilot study using these biodegradable nanoparticles, measuring their optical properties which are found to be in line with theoretical predictions.

  4. Radio-Optical Imaging of ATLBS Survey

    Indian Academy of Sciences (India)

    Kshitij Thorat

    2011-12-01

    We present the radio-optical imaging of ATLBS, a sensitive radio survey (Subrahmanyan et al. 2010). The primary aim of the ATLBS survey is to image low-power radio sources which form the bulk of the radio source population to moderately high red-shifts ( ∼ 1.0). The accompanying multiband optical and near infra-red observations provide information about the hosts and environments of the radio sources. We give here details of the imaging of the radio data and optical data for the ATLBS survey.

  5. Strain effects on the optical parameters of quantum dots nanocrystals employed in biomedical applications

    International Nuclear Information System (INIS)

    The purpose of this study was to perform the influence of the strain (lattice and radius) effects on the optical parameters of nanocrystals for use in medical imaging instrumentation technology. The present manuscript involved (a) quantum dots (QD) based nanophosphors with particle size 3–5 nm in diameter, (b) dielectric constants (core) of nanophosphors in the range 2–4, and (c) the whole portion of the electromagnetic spectrum visible to the human eye, 400–700 nm. Lattice strain effects on the optical properties were evaluated by the modification of the bulk dielectric function using a Drude–Sommerfeld model for the free or conduction electrons, and a core term representing the bound electrons. The Mie scattering theory, was used to predict the shifted optical parameters. Results showed that (i) lattice stain reduces the real part (n) of refractive index, (ii) the reduction of n becomes higher with the increase of εcore(ω) and (iii) no significant variations on n were observed under the variability of incident light wavelength (400–700 nm). Light wavelength was found to affect significantly the imaginary part (k) of the complex refractive index. In addition, the radius strain (i) decreases the light extinction coefficient, mext, (ii) increases the anisotropy factor, g and (iii) increases the light absorption probability, p. However, in cases of εcore(ω)=2, radius strain of 5% seems to present slightly higher p values than the cases of radius strain 10%. The present investigation found that the modification on the optical parameters enhances the utilization of quantom-dots luminescent nanomaterial in optical diffusion studies with requirements of high sensitivity (such as nuclear medical imaging modalities) rather than of high light spatial resolution (such as X-ray projection medical imaging systems). -- Highlights: • The strain effects on the optical parameters of quantum dots were examined. • Light wavelength affects significantly the

  6. State-of-the-art in retinal optical coherence tomography image analysis

    OpenAIRE

    Baghaie, Ahmadreza; Yu, Zeyun; D’Souza, Roshan M.

    2015-01-01

    Optical coherence tomography (OCT) is an emerging imaging modality that has been widely used in the field of biomedical imaging. In the recent past, it has found uses as a diagnostic tool in dermatology, cardiology, and ophthalmology. In this paper we focus on its applications in the field of ophthalmology and retinal imaging. OCT is able to non-invasively produce cross-sectional volumetric images of the tissues which can be used for analysis of tissue structure and properties. Due to the und...

  7. Adaptive optics optical coherence tomography for retina imaging

    Institute of Scientific and Technical Information of China (English)

    Guohua Shi; Yun Dai; Ling Wang; Zhihua Ding; Xuejun Rao; Yudong Zhang

    2008-01-01

    When optical coherence tomography (OCT) is used for human retina imaging, its transverse resolution is limited by the aberrations of human eyes. To overcome this disadvantage, a high resolution imaging system for living human retina, which consists of a time domain OCT system and a 37-elements adaptive optics (AO) system, has been developed. The AO closed loop rate is 20 frames per second, and the OCT has a 6.7-μm axial resolution. In this paper, this system is introduced and the high resolution imaging results for retina are presented.

  8. Single-shot optical imaging through scattering medium using digital in-line holography

    CERN Document Server

    R., Vinu; Somkuwar, Atul S; Park, YongKeun; Singh, Rakesh Kumar

    2016-01-01

    Non-invasive and single-shot holographic imaging through complex media is technically challenging due to random light scattering which significantly scrambles optical information. Recently, several methods have been presented to address this issue. However, they require complicated measurements of optical transmission matrices, or existing techniques do only retrieve intensity information. Here we propose and experimentally demonstrate a holographic approach for single-shot imaging through a scattering layer based on digital in-line holography in combination with the autocorrelation of the speckle intensity. Using a simple optical configuration and experimental procedure, the proposed method enables to retrieve the complex amplitude image of an object located at arbitrary planes behind scattering media. The technique has potential applications in biomedical imaging, deep tissue microscopy, and 3D imaging through turbid media.

  9. Nanohybrids Near-Field Optical Microscopy: From Image Shift to Biosensor Application

    Directory of Open Access Journals (Sweden)

    Nayla El-Kork

    2016-01-01

    Full Text Available Near-Field Optical Microscopy is a valuable tool for the optical and topographic study of objects at a nanometric scale. Nanoparticles constitute important candidates for such type of investigations, as they bear an important weight for medical, biomedical, and biosensing applications. One, however, has to be careful as artifacts can be easily reproduced. In this study, we examined hybrid nanoparticles (or nanohybrids in the near-field, while in solution and attached to gold nanoplots. We found out that they can be used for wavelength modulable near-field biosensors within conditions of artifact free imaging. In detail, we refer to the use of topographic/optical image shift and the imaging of Local Surface Plasmon hot spots to validate the genuineness of the obtained images. In summary, this study demonstrates a new way of using simple easily achievable comparative methods to prove the authenticity of near-field images and presents nanohybrid biosensors as an application.

  10. Molecular imaging by optically-detected electron spin resonance of nitrogen-vacancies in nanodiamond

    CERN Document Server

    Hegyi, Alex

    2012-01-01

    Molecular imaging refers to a class of noninvasive biomedical imaging techniques with the sensitivity and specificity to image biochemical variations in-vivo. An ideal molecular imaging technique visualizes a biochemical target according to a range of criteria, including high spatial and temporal resolution, high contrast relative to non-targeted tissues, depth-independent penetration into tissue, lack of harm to the organism under study, and low cost. Because no existing molecular imaging modality is ideal for all purposes, new imaging approaches are needed. Here we demonstrate a novel molecular imaging approach, called nanodiamond imaging, that uses nanodiamonds containing nitrogen-vacancy (NV) color centers as an imaging agent, and image nanodiamond targets in pieces of chicken breast. Nanodiamonds can be tagged with biologically active molecules so they bind to specific receptors; their distribution can then be quantified in-vivo via optically-detected magnetic resonance of the NVs. In effect, we are demo...

  11. Space-based optical image encryption.

    Science.gov (United States)

    Chen, Wen; Chen, Xudong

    2010-12-20

    In this paper, we propose a new method based on a three-dimensional (3D) space-based strategy for the optical image encryption. The two-dimensional (2D) processing of a plaintext in the conventional optical encryption methods is extended to a 3D space-based processing. Each pixel of the plaintext is considered as one particle in the proposed space-based optical image encryption, and the diffraction of all particles forms an object wave in the phase-shifting digital holography. The effectiveness and advantages of the proposed method are demonstrated by numerical results. The proposed method can provide a new optical encryption strategy instead of the conventional 2D processing, and may open up a new research perspective for the optical image encryption.

  12. Magnetic resonance imaging of optic nerve

    Directory of Open Access Journals (Sweden)

    Foram Gala

    2015-01-01

    Full Text Available Optic nerves are the second pair of cranial nerves and are unique as they represent an extension of the central nervous system. Apart from clinical and ophthalmoscopic evaluation, imaging, especially magnetic resonance imaging (MRI, plays an important role in the complete evaluation of optic nerve and the entire visual pathway. In this pictorial essay, the authors describe segmental anatomy of the optic nerve and review the imaging findings of various conditions affecting the optic nerves. MRI allows excellent depiction of the intricate anatomy of optic nerves due to its excellent soft tissue contrast without exposure to ionizing radiation, better delineation of the entire visual pathway, and accurate evaluation of associated intracranial pathologies.

  13. Classification of visual signs in abdominal CT image figures in biomedical literature

    Science.gov (United States)

    Xue, Zhiyun; You, Daekeun; Antani, Sameer; Long, L. Rodney; Demner-Fushman, Dina; Thoma, George R.

    2014-03-01

    "Imaging signs" are a critical part of radiology's language. They not only are important for conveying diagnosis, but may also aid in indexing radiology literature and retrieving relevant cases and images. Here we report our work towards representing and categorizing imaging signs of abdominal abnormalities in figures in the radiology literature. Given a region-of-interest (ROI) from a figure, our goal was to assign a correct imaging sign label to that ROI from the following seven: accordion, comb, ring, sandwich, small bowel feces, target, or whirl. As training and test data, we created our own "gold standard" dataset of regions containing imaging signs. We computed 2997 feature attributes to represent imaging sign characteristics for each ROI in training and test sets. Following feature selection they were reduced to 70 attributes and were input to a Support Vector Machine classifier. We applied image-enhancement methods to compensate for variable quality of the images in radiology articles. In particular we developed a method for automatic detection and removal of pointers/markers (arrows, arrowheads, and asterisk symbols) on the images. These pointers/markers are valuable for approximately locating ROIs; however, they degrade the classification because they are often (partially) included in the training ROIs. On a test set of 283 ROIs, our method achieved an overall accuracy of 70% in labeling the seven signs, which we believe is a promising result for using imaging signs to search/retrieve radiology literature. This work is also potentially valuable for the creation of a visual ontology of biomedical imaging entities.

  14. Optical tecnology developments in biomedicine: history, current and future.

    Science.gov (United States)

    Nioka, Shoko; Chen, Yu

    2011-09-01

    Biomedical optics is a rapidly emerging field for medical imaging and diagnostics. This paper reviews several biomedical optical technologies that have been developed and translated for either clinical or pre-clinical applications. Specifically, we focus on the following technologies: 1) near-infrared spectroscopy and tomography, 2) optical coherence tomography, 3) fluorescence spectroscopy and imaging, and 4) optical molecular imaging. There representative biomedical applications are also discussed here. PMID:23905030

  15. Adaptive optics imaging of the retina.

    Science.gov (United States)

    Battu, Rajani; Dabir, Supriya; Khanna, Anjani; Kumar, Anupama Kiran; Roy, Abhijit Sinha

    2014-01-01

    Adaptive optics is a relatively new tool that is available to ophthalmologists for study of cellular level details. In addition to the axial resolution provided by the spectral-domain optical coherence tomography, adaptive optics provides an excellent lateral resolution, enabling visualization of the photoreceptors, blood vessels and details of the optic nerve head. We attempt a mini review of the current role of adaptive optics in retinal imaging. PubMed search was performed with key words Adaptive optics OR Retina OR Retinal imaging. Conference abstracts were searched from the Association for Research in Vision and Ophthalmology (ARVO) and American Academy of Ophthalmology (AAO) meetings. In total, 261 relevant publications and 389 conference abstracts were identified.

  16. Optical image encryption using multilevel Arnold transform and noninterferometric imaging

    Science.gov (United States)

    Chen, Wen; Chen, Xudong

    2011-11-01

    Information security has attracted much current attention due to the rapid development of modern technologies, such as computer and internet. We propose a novel method for optical image encryption using multilevel Arnold transform and rotatable-phase-mask noninterferometric imaging. An optical image encryption scheme is developed in the gyrator transform domain, and one phase-only mask (i.e., phase grating) is rotated and updated during image encryption. For the decryption, an iterative retrieval algorithm is proposed to extract high-quality plaintexts. Conventional encoding methods (such as digital holography) have been proven vulnerably to the attacks, and the proposed optical encoding scheme can effectively eliminate security deficiency and significantly enhance cryptosystem security. The proposed strategy based on the rotatable phase-only mask can provide a new alternative for data/image encryption in the noninterferometric imaging.

  17. Extracting optical scattering properties on the basis of phase contrast images for diagnosing stomach cancer

    International Nuclear Information System (INIS)

    We combine morphological granulometry with Mie theory in order to analyze phase contrast images of biomedical tissue for cancer diagnosis. This method correlates microscopic phase distributions of the tissue image and macroscopic optical scattering properties of the tissue. Our results show that the particle size density distribution can be used to quantitatively identify morphological changes of cancerous stomach tissues. Our method can distinguish normal tissue from cancerous tissues, using the significant differences in scattering coefficient, reduced scattering coefficient and phase function. Therefore, this method can provide not only quantitative information for the diagnosis of cancer, but also accurate optical scattering parameters for photothermal therapy for cancer. (paper)

  18. Speckle noise reduction in ultrasound biomedical B-scan images using discrete topological derivative.

    Science.gov (United States)

    Damodaran, Nedumaran; Ramamurthy, Sivakumar; Velusamy, Sekar; Manickam, Gayathri Kanakaraj

    2012-02-01

    Over three decades, several despeckling techniques have been developed by researchers to reduce the speckle noise inherently present in ultrasound B-scan images without losing the diagnostic information. The topological derivative (TD) is the recently adopted technique in the area of biomedical image processing. In this work, we computed the topological derivative for an appropriate function associated to the ultrasound B-scan image gradient by assigning a diffusion factor k, which indicates the cost endowed to that particular image. In this article, a novel image denoising approach, called discrete topological derivative (DTD) has been implemented. The algorithm has been developed in MATLAB7.1 and tested over 200 ultrasound B-scan images of several organs such as the liver, kidney, gall bladder and pancreas. Further, the performance of the DTD algorithm has been estimated by calculating important performance metrics. A comparative study was carried out between the DTD and the traditional despeckling techniques. The calculated peak signal-to-noise ratio (PSNR) (the ratio between the maximum possible power of a signal and the power of corrupting noise that affects the fidelity of its representation) value of the DTD despeckled liver image is found to be 28 which is comparable with the outperformed speckle reducing anisotropic diffusion (SRAD) filter. SRAD filter is an edge-sensitive diffusion method for speckled images of ultrasonic and radar imaging applications. Canny edge detection and visual inspection of DTD filtered images by the trained radiologist found that the DTD algorithm preserves the hypoechoic and hyperechoic regions resulting in improved diagnosis as well as tissue characterization. PMID:22230135

  19. A beam optics study of the biomedical beam line at a proton therapy facility

    Energy Technology Data Exchange (ETDEWEB)

    Yun, Chong Cheoul [National Center for Inter-University Research Facilities, Seoul National University, Sillim-dong, Gwanak, Seoul (Korea, Republic of); Kim, Jong-Won [Research Institute and Hospital, National Cancer Center, 809 Madu-dong, Ilsan-gu, Koyang, Kyonggi 410 769 (Korea, Republic of)], E-mail: jwkim@ncc.re.kr

    2007-10-15

    A biomedical beam line has been designed for the experimental area of a proton therapy facility to deliver mm to sub-mm size beams in the energy range of 20-50 MeV using the TRANSPORT/TURTLE beam optics codes and a newly-written program. The proton therapy facility is equipped with a 230 MeV fixed-energy cyclotron and an energy selection system based on a degrader and slits, so that beam currents available for therapy decrease at lower energies in the therapeutic beam energy range of 70-230 MeV. The new beam line system is composed of an energy-degrader, two slits, and three quadrupole magnets. The minimum beam sizes achievable at the focal point are estimated for the two energies of 50 and 20 MeV. The focused FWHM beam size is approximately 0.3 mm with an expected beam current of 20 pA when the beam energy is reduced to 50 MeV from 100 MeV, and roughly 0.8 mm with a current of 10 pA for a 20 MeV beam.

  20. Peer-to-peer Monte Carlo simulation of photon migration in topical applications of biomedical optics

    Science.gov (United States)

    Doronin, Alexander; Meglinski, Igor

    2012-09-01

    In the framework of further development of the unified approach of photon migration in complex turbid media, such as biological tissues we present a peer-to-peer (P2P) Monte Carlo (MC) code. The object-oriented programming is used for generalization of MC model for multipurpose use in various applications of biomedical optics. The online user interface providing multiuser access is developed using modern web technologies, such as Microsoft Silverlight, ASP.NET. The emerging P2P network utilizing computers with different types of compute unified device architecture-capable graphics processing units (GPUs) is applied for acceleration and to overcome the limitations, imposed by multiuser access in the online MC computational tool. The developed P2P MC was validated by comparing the results of simulation of diffuse reflectance and fluence rate distribution for semi-infinite scattering medium with known analytical results, results of adding-doubling method, and with other GPU-based MC techniques developed in the past. The best speedup of processing multiuser requests in a range of 4 to 35 s was achieved using single-precision computing, and the double-precision computing for floating-point arithmetic operations provides higher accuracy.

  1. Advanced Imaging Optics Utilizing Wavefront Coding.

    Energy Technology Data Exchange (ETDEWEB)

    Scrymgeour, David [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Boye, Robert [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Adelsberger, Kathleen [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2015-06-01

    Image processing offers a potential to simplify an optical system by shifting some of the imaging burden from lenses to the more cost effective electronics. Wavefront coding using a cubic phase plate combined with image processing can extend the system's depth of focus, reducing many of the focus-related aberrations as well as material related chromatic aberrations. However, the optimal design process and physical limitations of wavefront coding systems with respect to first-order optical parameters and noise are not well documented. We examined image quality of simulated and experimental wavefront coded images before and after reconstruction in the presence of noise. Challenges in the implementation of cubic phase in an optical system are discussed. In particular, we found that limitations must be placed on system noise, aperture, field of view and bandwidth to develop a robust wavefront coded system.

  2. Introduction: feature issue on In Vivo Microcirculation Imaging

    OpenAIRE

    Dunn, Andrew K.; Leitgeb, Rainer; Wang, Ruikang K.; Zhang, Hao F.

    2011-01-01

    The editors introduce the Biomedical Optics Express feature issue, “In Vivo Microcirculation Imaging,” which includes 14 contributions from the biomedical optics community, covering such imaging techniques as optical coherence tomography, photoacoustic microscopy, laser Doppler /speckle imaging, and near infrared spectroscopy and fluorescence imaging.

  3. Comparative Analysis of Various Image Fusion Techniques For Biomedical Images: A Review

    Directory of Open Access Journals (Sweden)

    Nayera Nahvi,

    2014-05-01

    Full Text Available Image Fusion is a process of combining the relevant information from a set of images, into a single image, wherein the resultant fused image will be more informative and complete than any of the input images. This paper discusses implementation of DWT technique on different images to make a fused image having more information content. As DWT is the latest technique for image fusion as compared to simple image fusion and pyramid based image fusion, so we are going to implement DWT as the image fusion technique in our paper. Other methods such as Principal Component Analysis (PCA based fusion, Intensity hue Saturation (IHS Transform based fusion and high pass filtering methods are also discussed. A new algorithm is proposed using Discrete Wavelet transform and different fusion techniques including pixel averaging, min-max and max-min methods for medical image fusion. KEYWORDS:

  4. Biomedical engineering and nanotechnology

    International Nuclear Information System (INIS)

    This book is predominantly a compilation of papers presented in the conference which is focused on the development in biomedical materials, biomedical devises and instrumentation, biomedical effects of electromagnetic radiation, electrotherapy, radiotherapy, biosensors, biotechnology, bioengineering, tissue engineering, clinical engineering and surgical planning, medical imaging, hospital system management, biomedical education, biomedical industry and society, bioinformatics, structured nanomaterial for biomedical application, nano-composites, nano-medicine, synthesis of nanomaterial, nano science and technology development. The papers presented herein contain the scientific substance to suffice the academic directivity of the researchers from the field of biomedicine, biomedical engineering, material science and nanotechnology. Papers relevant to INIS are indexed separately

  5. Functional imaging and assessment of the glucose diffusion rate in epithelial tissues in optical coherence tomography

    International Nuclear Information System (INIS)

    Functional imaging, monitoring and quantitative description of glucose diffusion in epithelial and underlying stromal tissues in vivo and controlling of the optical properties of tissues are extremely important for many biomedical applications including the development of noninvasive or minimally invasive glucose sensors as well as for therapy and diagnostics of various diseases, such as cancer, diabetic retinopathy, and glaucoma. Recent progress in the development of a noninvasive molecular diffusion biosensor based on optical coherence tomography (OCT) is described. The diffusion of glucose was studied in several epithelial tissues both in vitro and in vivo. Because OCT provides depth-resolved imaging of tissues with high in-depth resolution, the glucose diffusion is described not only as a function of time but also as a function of depth. (special issue devoted to application of laser technologies in biophotonics and biomedical studies)

  6. Optical encryption with selective computational ghost imaging

    Science.gov (United States)

    Zafari, Mohammad; kheradmand, Reza; Ahmadi-Kandjani, Sohrab

    2014-10-01

    Selective computational ghost imaging (SCGI) is a technique which enables the reconstruction of an N-pixel image from N measurements or less. In this paper we propose an optical encryption method based on SCGI and experimentally demonstrate that this method has much higher security under eavesdropping and unauthorized accesses compared with previous reported methods.

  7. Biomedical Applications of the Information-efficient Spectral Imaging Sensor (ISIS)

    Energy Technology Data Exchange (ETDEWEB)

    Gentry, S.M.; Levenson, R.

    1999-01-21

    The Information-efficient Spectral Imaging Sensor (ISIS) approach to spectral imaging seeks to bridge the gap between tuned multispectral and fixed hyperspectral imaging sensors. By allowing the definition of completely general spectral filter functions, truly optimal measurements can be made for a given task. These optimal measurements significantly improve signal-to-noise ratio (SNR) and speed, minimize data volume and data rate, while preserving classification accuracy. The following paper investigates the application of the ISIS sensing approach in two sample biomedical applications: prostate and colon cancer screening. It is shown that in these applications, two to three optimal measurements are sufficient to capture the majority of classification information for critical sample constituents. In the prostate cancer example, the optimal measurements allow 8% relative improvement in classification accuracy of critical cell constituents over a red, green, blue (RGB) sensor. In the colon cancer example, use of optimal measurements boost the classification accuracy of critical cell constituents by 28% relative to the RGB sensor. In both cases, optimal measurements match the performance achieved by the entire hyperspectral data set. The paper concludes that an ISIS style spectral imager can acquire these optimal spectral images directly, allowing improved classification accuracy over an RGB sensor. Compared to a hyperspectral sensor, the ISIS approach can achieve similar classification accuracy using a significantly lower number of spectral samples, thus minimizing overall sample classification time and cost.

  8. Impacts of optical turbulence on underwater imaging

    Science.gov (United States)

    Hou, Weilin; Woods, S.; Goode, W.; Jarosz, E.; Weidemann, A.

    2011-06-01

    Optical signal transmission underwater is of vital interests to both civilian and military applications. The range and signal to noise during the transmission, as a function of system and water optical properties determines the effectiveness of EO technology. These applications include diver visibility, search and rescue, mine detection and identification, and optical communications. The impact of optical turbulence on underwater imaging has been postulated and observed by many researchers. However, no quantative studies have been done until recently, in terms of both the environmental conditions, and impacts on image quality as a function of range and spatial frequencies. Image data collected from field measurements during SOTEX (Skaneateles Optical Turbulence Exercise, July 22-31, 2010) using the Image Measurement Assembly for Subsurface Turbulence (IMAST) are presented. Optical properties of the water column in the field were measured using WETLab's ac-9 and Laser In Situ Scattering and Transmissometer (LISST, Sequoia Scientific), in coordination with physical properties including CTD (Seabird), dissipation rate of kinetic energy and heat, using both the Vector velocimeter and CT combo (Nortek and PME), and shear probe based Vertical Microstructure Profiler (VMP, Rockland). The strong stratification structure in the water column provides great opportunity to observe various dissipation strengths throughout the water column, which corresponds directly with image quality as shown. Initial results demonstrate general agreement between data collected and model prediction, while discrepancies between measurements and model suggest higher spatial and temporal observations are needed in the future.

  9. NAOMI: nanoparticle assisted optical molecular imaging

    Science.gov (United States)

    Faber, Dirk J.; van Velthoven, Mirjam E. J.; de Bruin, Martijn; Aalders, Maurice C. G.; Verbraak, Frank D.; Graf, Christina; van Leeuwen, Ton G.

    2006-02-01

    Our first steps towards nanoparticle assisted, optical molecular imaging (NAOMI) using OCT as the imaging modality are presented. We derive an expression to estimate the sensitivity of this technique. We propose to use nanoparticles based on biodegradable polymers, loaded with suitable dyes as contrast agent, and outline a method for establishing their desired optical properties prior to synthesis. This report presents preliminary results of our investigation on the use of nanoshells to serve as contrast agents We injected nanoshells with specific contrast features in the 800 nm wavelength region in excised porcine eyes. The nanoshells showed up as bright reflecting structures in the OCT images, which confirm their potential as contrast agents.

  10. Positron emission tomography and optical tissue imaging

    Science.gov (United States)

    Falen, Steven W.; Hoefer, Richard A.; Majewski, Stanislaw; McKisson, John; Kross, Brian; Proffitt, James; Stolin, Alexander; Weisenberger, Andrew G.

    2012-05-22

    A mobile compact imaging system that combines both PET imaging and optical imaging into a single system which can be located in the operating room (OR) and provides faster feedback to determine if a tumor has been fully resected and if there are adequate surgical margins. While final confirmation is obtained from the pathology lab, such a device can reduce the total time necessary for the procedure and the number of iterations required to achieve satisfactory resection of a tumor with good margins.

  11. Cloned images and the optical unconscious

    DEFF Research Database (Denmark)

    Romic, Bojana

    In this presentation I would discuss the term optical unconscious as defined in the writings of Walter Benjamin and Rosalind Krauss, and propose a broadened definition of this term, taking into account the new media spreadability (Jenkins et al., 2013) and 'image cloning' (W.J.T. Mitchell, 2008)....... of Images 2001-04. in: Costello, D. and Willsdon, D. (eds) (2008) The Life and Death of Images: Ethics and Aesthetics. London: Tate Publishing....

  12. Optical encryption for large-sized images

    Science.gov (United States)

    Sanpei, Takuho; Shimobaba, Tomoyoshi; Kakue, Takashi; Endo, Yutaka; Hirayama, Ryuji; Hiyama, Daisuke; Hasegawa, Satoki; Nagahama, Yuki; Sano, Marie; Oikawa, Minoru; Sugie, Takashige; Ito, Tomoyoshi

    2016-02-01

    We propose an optical encryption framework that can encrypt and decrypt large-sized images beyond the size of the encrypted image using our two methods: random phase-free method and scaled diffraction. In order to record the entire image information on the encrypted image, the large-sized images require the random phase to widely diffuse the object light over the encrypted image; however, the random phase gives rise to the speckle noise on the decrypted images, and it may be difficult to recognize the decrypted images. In order to reduce the speckle noise, we apply our random phase-free method to the framework. In addition, we employ scaled diffraction that calculates light propagation between planes with different sizes by changing the sampling rates.

  13. Multimodal optical imaging for detecting breast cancer

    Science.gov (United States)

    Patel, Rakesh; Khan, Ashraf; Wirth, Dennis; Kamionek, Michal; Kandil, Dina; Quinlan, Robert; Yaroslavsky, Anna N.

    2012-06-01

    The goal of the study was to evaluate wide-field and high-resolution multimodal optical imaging, including polarization, reflectance, and fluorescence for the intraoperative detection of breast cancer. Lumpectomy specimens were stained with 0.05 mg/ml aqueous solution of methylene blue (MB) and imaged. Wide-field reflectance images were acquired between 390 and 750 nm. Wide-field fluorescence images were excited at 640 nm and registered between 660 and 750 nm. High resolution confocal reflectance and fluorescence images were excited at 642 nm. Confocal fluorescence images were acquired between 670 nm and 710 nm. After imaging, the specimens were processed for hematoxylin and eosin (H&E) histopathology. Histological slides were compared with wide-field and high-resolution optical images to evaluate correlation of tumor boundaries and cellular morphology, respectively. Fluorescence polarization imaging identified the location, size, and shape of the tumor in all the cases investigated. Averaged fluorescence polarization values of tumor were higher as compared to normal tissue. Statistical analysis confirmed the significance of these differences. Fluorescence confocal imaging enabled cellular-level resolution. Evaluation and statistical analysis of MB fluorescence polarization values registered from single tumor and normal cells demonstrated higher fluorescence polarization from cancer. Wide-field high-resolution fluorescence and fluorescence polarization imaging shows promise for intraoperative delineation of breast cancers.

  14. Full-angle optical imaging of near-infrared fluorescent probes implanted in small animals

    Institute of Scientific and Technical Information of China (English)

    Gang Hu; Junjie Yao; Jing Bai

    2008-01-01

    To provide a valuable experimental platform for in vivo biomedical research of small animal model with fluorescence mediated approach, we developed a whole-body near-infrared fluorescence molecular imaging system as described in this paper. This system is based on a sensitive CCD camera and has the ability to achieve 360° full-angle source illuminations and projections capture of the targets to obtain the dense sampling by performing rotational scan. The measurement accuracy is validated from cylinder phantom experiments by the comparison between the experimental data and theoretical predictions. Finally, we also present typical in vivo images of fluorescent tube implanted into the mouse body. The results are promising and have proved the system imaging performance for macroscopic optical biomedical research.

  15. PREFACE: 2nd International Conference and Young Scientist School ''Magnetic resonance imaging in biomedical research''

    Science.gov (United States)

    Naumova, A. V.; Khodanovich, M. Y.; Yarnykh, V. L.

    2016-02-01

    The Second International Conference and Young Scientist School ''Magnetic resonance imaging in biomedical research'' was held on the campus of the National Research Tomsk State University (Tomsk, Russia) on September 7-9, 2015. The conference was focused on magnetic resonance imaging (MRI) applications for biomedical research. The main goal was to bring together basic scientists, clinical researchers and developers of new MRI techniques to bridge the gap between clinical/research needs and advanced technological solutions. The conference fostered research and development in basic and clinical MR science and its application to health care. It also had an educational purpose to promote understanding of cutting-edge MR developments. The conference provided an opportunity for researchers and clinicians to present their recent theoretical developments, practical applications, and to discuss unsolved problems. The program of the conference was divided into three main topics. First day of the conference was devoted to educational lectures on the fundamentals of MRI physics and image acquisition/reconstruction techniques, including recent developments in quantitative MRI. The second day was focused on developments and applications of new contrast agents. Multinuclear and spectroscopic acquisitions as well as functional MRI were presented during the third day of the conference. We would like to highlight the main developments presented at the conference and introduce the prominent speakers. The keynote speaker of the conference Dr. Vasily Yarnykh (University of Washington, Seattle, USA) presented a recently developed MRI method, macromolecular proton fraction (MPF) mapping, as a unique tool for modifying image contrast and a unique tool for quantification of the myelin content in neural tissues. Professor Yury Pirogov (Lomonosov Moscow State University) described development of new fluorocarbon compounds and applications for biomedicine. Drs. Julia Velikina and Alexey

  16. Intensity interferometry: Optical imaging with kilometer baselines

    CERN Document Server

    Dravins, Dainis

    2016-01-01

    Optical imaging with microarcsecond resolution will reveal details across and outside stellar surfaces but requires kilometer-scale interferometers, challenging to realize either on the ground or in space. Intensity interferometry, electronically connecting independent telescopes, has a noise budget that relates to the electronic time resolution, circumventing issues of atmospheric turbulence. Extents up to a few km are becoming realistic with arrays of optical air Cherenkov telescopes (primarily erected for gamma-ray studies), enabling an optical equivalent of radio interferometer arrays. Pioneered by Hanbury Brown and Twiss, digital versions of the technique have now been demonstrated, reconstructing diffraction-limited images from laboratory measurements over hundreds of optical baselines. This review outlines the method from its beginnings, describes current experiments, and sketches prospects for future observations.

  17. LDA optical setup using holographic imaging configuration

    Science.gov (United States)

    Ghosh, Abhijit; Nirala, A. K.

    2015-11-01

    This paper describes one of the possible ways for improving fringe quality at LDA measuring volume using a holographic imaging configuration consisting of a single hololens. For its comparative study with a conventional imaging configuration, a complete characterization of fringes formed at the measurement volume by both the configuration is presented. Results indicate the qualitative as well as quantitative improvement of the fringes formed at measurement volume by the holographic imaging configuration. Hence it is concluded that use of holographic imaging configuration for making LDA optical setup is a better choice than the conventional one.

  18. Nonlinear Optical Image Processing with Bacteriorhodopsin Films

    Science.gov (United States)

    Downie, John D.; Deiss, Ron (Technical Monitor)

    1994-01-01

    The transmission properties of some bacteriorhodopsin film spatial light modulators are uniquely suited to allow nonlinear optical image processing operations to be applied to images with multiplicative noise characteristics. A logarithmic amplitude transmission feature of the film permits the conversion of multiplicative noise to additive noise, which may then be linearly filtered out in the Fourier plane of the transformed image. The bacteriorhodopsin film displays the logarithmic amplitude response for write beam intensities spanning a dynamic range greater than 2.0 orders of magnitude. We present experimental results demonstrating the principle and capability for several different image and noise situations, including deterministic noise and speckle. Using the bacteriorhodopsin film, we successfully filter out image noise from the transformed image that cannot be removed from the original image.

  19. Sound and Image Processing with Optical Biocomputers

    OpenAIRE

    Jones, Cameron L

    2003-01-01

    This paper introduces a new method to perform signal processing using cells or atoms to synthesize variation in digital data stored in optical format. Interfacing small-scale biological or chemical systems with information stored on CD, DVD and related disc media has been termed molecular media. This is defined as micron or nanoscale interference and/or augmentation of optical data translation with a specific focus on sound and image processing. The principle of this approach uses cells with ...

  20. Optics of astigmatism and retinal image quality

    OpenAIRE

    Vilaseca, M.; Díaz-Doutón, F.; Luque, S. O.; Aldaba, M.; Arjona, M.; Pujol, J.

    2012-01-01

    In the first part of this chapter, the optical condition of astigmatism is defined. The main causes and available classifications of ocular astigmatism are briefly described. The most relevant optical properties of image formation in an astigmatic eye are analysed and compared to that of an emmetropic eye and an eye with spherical ametropia. The spectacle prescription and axis notation for astigmatism are introduced, and the correction of astigmatism by means of lenses is briefly described. ...

  1. Hessian-based norm regularization for image restoration with biomedical applications.

    Science.gov (United States)

    Lefkimmiatis, Stamatios; Bourquard, Aurélien; Unser, Michael

    2012-03-01

    We present nonquadratic Hessian-based regularization methods that can be effectively used for image restoration problems in a variational framework. Motivated by the great success of the total-variation (TV) functional, we extend it to also include second-order differential operators. Specifically, we derive second-order regularizers that involve matrix norms of the Hessian operator. The definition of these functionals is based on an alternative interpretation of TV that relies on mixed norms of directional derivatives. We show that the resulting regularizers retain some of the most favorable properties of TV, i.e., convexity, homogeneity, rotation, and translation invariance, while dealing effectively with the staircase effect. We further develop an efficient minimization scheme for the corresponding objective functions. The proposed algorithm is of the iteratively reweighted least-square type and results from a majorization-minimization approach. It relies on a problem-specific preconditioned conjugate gradient method, which makes the overall minimization scheme very attractive since it can be applied effectively to large images in a reasonable computational time. We validate the overall proposed regularization framework through deblurring experiments under additive Gaussian noise on standard and biomedical images.

  2. MR imaging of optic chiasmatic glioma

    International Nuclear Information System (INIS)

    To evaluate the MR findings of optic chiasmatic glioma (OCG). MR images were reviewed in 14 patients with histologically proven OCGs and one with neurofibromatosis type 1 (male: female=8:7, mean age=8.5 years.) Tumors were evaluated retrospectively with respect to their size, involvement of the optic pathway, transverse/vertical diameter ratio based on the coronal plane, signal intensities, enhancement pattern, and the presence of a cyst or calcification. Tumors was measured 1.7-5.5 (mean, 3.3) cm in maximum diameter. In ten patients, the optic tracts were involved, and in three, the optic nerves. In 12 patients, tumors had a transverse/vertical diameter ratio of over one, and showed iso (n=5) or low signal intensity (n=10) compared with gray matter at T1-weighted imaging and high signal intensity (n=15) at T2-weighted imaging. Cyst formations were ween in eight patients, and tumors were enhanced strongly and homogeneously in nine and peripherally in four. In seven three was associated hydrocephalus, and in one, calcification. OCG is a suprasellar tumor which can extend into the optic pathway, has a transverse/vertical diameter ratio of more than one, and shows strong and homogeneous enhancement. These MR imaging findings are useful for the differentiation of OCG from other suprasellar tumors

  3. MR imaging of optic chiasmatic glioma

    Energy Technology Data Exchange (ETDEWEB)

    Hong, Seong Sook; Lee, Ho Kyu; Kim, Hyun Jin; Ryu, Meung Sun; Goo, Hyun Woo; Yoon, Chong Hyun; Choi, Choong Gon; Suh, Dae Chul; Ra, Young Shin; Khang, Shin Kwang [University of Ulsan College of Medicine, Seoul (Korea, Republic of)

    2002-08-01

    To evaluate the MR findings of optic chiasmatic glioma (OCG). MR images were reviewed in 14 patients with histologically proven OCGs and one with neurofibromatosis type 1 (male: female=8:7, mean age=8.5 years.) Tumors were evaluated retrospectively with respect to their size, involvement of the optic pathway, transverse/vertical diameter ratio based on the coronal plane, signal intensities, enhancement pattern, and the presence of a cyst or calcification. Tumors was measured 1.7-5.5 (mean, 3.3) cm in maximum diameter. In ten patients, the optic tracts were involved, and in three, the optic nerves. In 12 patients, tumors had a transverse/vertical diameter ratio of over one, and showed iso (n=5) or low signal intensity (n=10) compared with gray matter at T1-weighted imaging and high signal intensity (n=15) at T2-weighted imaging. Cyst formations were ween in eight patients, and tumors were enhanced strongly and homogeneously in nine and peripherally in four. In seven three was associated hydrocephalus, and in one, calcification. OCG is a suprasellar tumor which can extend into the optic pathway, has a transverse/vertical diameter ratio of more than one, and shows strong and homogeneous enhancement. These MR imaging findings are useful for the differentiation of OCG from other suprasellar tumors.

  4. Silver and Gold Nanostructures: Engineering their Optical Properties for Biomedical Applications.

    Science.gov (United States)

    Xia, Younan

    2006-03-01

    We have focused on shape-controlled synthesis of silver and gold nanostructures. While the synthetic methodology mainly involves solution-phase redox chemistry, we have been working diligently to understand the complex physics behind the simple chemistry -- that is, the nucleation and growth mechanisms leading to the formation of nanostructures with a specific shape. Polyol synthesis of silver nanostructures provides a good example to illustrate this concept. We discovered that the shape of silver nanostructures were dictated by both the crystallinity and shape of nanocrystallite seeds, which were, in turn, controlled by factors such as reduction rate, oxidative etching, and surface capping. We also exploited the galvanic replacement reaction between silver and chloroauric acid to transform silver nanocubes into gold nanocages with controlled void size, wall thickness, and wall porosity. We were able to engineer the optical properties of resulting gold nanocages with optical resonance peaks ranging from the blue (400 nm) to the near infrared (1200 nm) simply by controlling the molar ratio of silver to chloroauric acid. Thanks to their exceptionally large scattering and absorption coefficients in the transparent window for soft tissues, this novel class of gold nanostructures has great potential emerging as both a contrast agent for optical imaging in early-stage tumor detection, and a therapeutic agent for photothermal cancer treatment.

  5. The in vivo activation of persistent nanophosphors for optical imaging of vascularization, tumours and grafted cells

    Science.gov (United States)

    Maldiney, Thomas; Bessière, Aurélie; Seguin, Johanne; Teston, Eliott; Sharma, Suchinder K.; Viana, Bruno; Bos, Adrie J. J.; Dorenbos, Pieter; Bessodes, Michel; Gourier, Didier; Scherman, Daniel; Richard, Cyrille

    2014-04-01

    Optical imaging for biological applications requires more sensitive tools. Near-infrared persistent luminescence nanoparticles enable highly sensitive in vivo optical detection and complete avoidance of tissue autofluorescence. However, the actual generation of persistent luminescence nanoparticles necessitates ex vivo activation before systemic administration, which prevents long-term imaging in living animals. Here, we introduce a new generation of optical nanoprobes, based on chromium-doped zinc gallate, whose persistent luminescence can be activated in vivo through living tissues using highly penetrating low-energy red photons. Surface functionalization of this photonic probe can be adjusted to favour multiple biomedical applications such as tumour targeting. Notably, we show that cells can endocytose these nanoparticles in vitro and that, after intravenous injection, we can track labelled cells in vivo and follow their biodistribution by a simple whole animal optical detection, opening new perspectives for cell therapy research and for a variety of diagnosis applications.

  6. Non-destructive imaging of optical nanofibres

    CERN Document Server

    Madsen, Lars S; Rubinsztein-Dunlop, Halina; Bowen, Warwick P

    2016-01-01

    Single-mode optical nanofibres are a central component of a broad range of applications and emerging technologies. Their fabrication has been extensively studied over the past decade, but imaging of the final sub-micrometre products has been restricted to destructive or low-precision techniques. Here we demonstrate an optical scattering-based scanning method that uses a probe nanofibre to locally scatter the evanescent field of a sample nanofibre. The method does not damage the sample nanofibre and is easily implemented only using the same equipment as in a standard fibre puller setup. We demonstrate sub-nanometre radial resolution at video rates (0.7 nm in 10 ms) on single mode nanofibres, allowing for a complete high-precision profile to be obtained within minutes of fabrication. The method thus enables non-destructive, fast and precise characterisation of optical nanofibers, with applications ranging from optical sensors and cold atom traps to non-linear optics.

  7. Optical-thermal light-tissue interactions during photoacoustic imaging

    Science.gov (United States)

    Gould, Taylor; Wang, Quanzeng; Pfefer, T. Joshua

    2014-03-01

    Photoacoustic imaging (PAI) has grown rapidly as a biomedical imaging technique in recent years, with key applications in cancer diagnosis and oximetry. In spite of these advances, the literature provides little insight into thermal tissue interactions involved in PAI. To elucidate these basic phenomena, we have developed, validated, and implemented a three-dimensional numerical model of tissue photothermal (PT) response to repetitive laser pulses. The model calculates energy deposition, fluence distributions, transient temperature and damage profiles in breast tissue with blood vessels and generalized perfusion. A parametric evaluation of these outputs vs. vessel diameter and depth, optical beam diameter, wavelength, and irradiance, was performed. For a constant radiant exposure level, increasing beam diameter led to a significant increase in subsurface heat generation rate. Increasing vessel diameter resulted in two competing effects - reduced mean energy deposition in the vessel due to light attenuation and greater thermal superpositioning due to reduced thermal relaxation. Maximum temperatures occurred either at the surface or in subsurface regions of the dermis, depending on vessel geometry and position. Results are discussed in terms of established exposure limits and levels used in prior studies. While additional experimental and numerical study is needed, numerical modeling represents a powerful tool for elucidating the effect of PA imaging devices on biological tissue.

  8. Multiplane 3D superresolution optical fluctuation imaging

    CERN Document Server

    Geissbuehler, Stefan; Godinat, Aurélien; Bocchio, Noelia L; Dubikovskaya, Elena A; Lasser, Theo; Leutenegger, Marcel

    2013-01-01

    By switching fluorophores on and off in either a deterministic or a stochastic manner, superresolution microscopy has enabled the imaging of biological structures at resolutions well beyond the diffraction limit. Superresolution optical fluctuation imaging (SOFI) provides an elegant way of overcoming the diffraction limit in all three spatial dimensions by computing higher-order cumulants of image sequences of blinking fluorophores acquired with a conventional widefield microscope. So far, three-dimensional (3D) SOFI has only been demonstrated by sequential imaging of multiple depth positions. Here we introduce a versatile imaging scheme which allows for the simultaneous acquisition of multiple focal planes. Using 3D cross-cumulants, we show that the depth sampling can be increased. Consequently, the simultaneous acquisition of multiple focal planes reduces the acquisition time and hence the photo-bleaching of fluorescent markers. We demonstrate multiplane 3D SOFI by imaging the mitochondria network in fixed ...

  9. Diffuse Optical Tomography for Brain Imaging: Theory

    Science.gov (United States)

    Yuan, Zhen; Jiang, Huabei

    Diffuse optical tomography (DOT) is a noninvasive, nonionizing, and inexpensive imaging technique that uses near-infrared light to probe tissue optical properties. Regional variations in oxy- and deoxy-hemoglobin concentrations as well as blood flow and oxygen consumption can be imaged by monitoring spatiotemporal variations in the absorption spectra. For brain imaging, this provides DOT unique abilities to directly measure the hemodynamic, metabolic, and neuronal responses to cells (neurons), and tissue and organ activations with high temporal resolution and good tissue penetration. DOT can be used as a stand-alone modality or can be integrated with other imaging modalities such as fMRI/MRI, PET/CT, and EEG/MEG in studying neurophysiology and pathology. This book chapter serves as an introduction to the basic theory and principles of DOT for neuroimaging. It covers the major aspects of advances in neural optical imaging including mathematics, physics, chemistry, reconstruction algorithm, instrumentation, image-guided spectroscopy, neurovascular and neurometabolic coupling, and clinical applications.

  10. LIF and fast imaging plasma jet characterization relevant for NTP biomedical applications

    International Nuclear Information System (INIS)

    In the field of biomedical application, many publications report on non-thermal plasma jet potentialities for cell behaviour modifications in cancer treatment, wound healing or sterilization. However most previous plasma jet characterizations were performed when jets expend freely in air. Only recently has the influence of the targeted surface been properly considered. In this work, modifications induced by various types of targets, mimicking the biological samples, in the plasma propagation and production of hydroxyl radicals are evidenced through time-resolved intensified charge-coupled device imaging and laser-induced fluorescence (LIF) measurements. A LIF model, also specifically dedicated to estimate air and water penetration inside the jet, is used and proves to be well adapted to characterize the plasma jet under biomedical application conditions. It is shown that the plasma produced by the plasma gun counter-propagates after impinging the surface which, for the same operating parameters, leads to an increase of almost one order of magnitude in the maximum OH density (from ∼2 × 1013 cm−3 for open-air propagation to ∼1 × 1014 cm−3 for a grounded metal target). The nature of the target, especially its electrical conductivity, as well as gas flow rate and voltage amplitude are playing a key role in the production of hydroxyl radicals. The strong interplay between gas flow dynamics and plasma propagation is here confirmed by air and water distribution measurements. The need for a multi-diagnostic approach, as well as great care in setting up the in situ characterization of plasma jets, is here emphasized. Special attention must not only be paid to voltage amplitude and gas flow rate but also to the nature, humidity and conductivity of the target. (paper)

  11. LIF and fast imaging plasma jet characterization relevant for NTP biomedical applications

    Science.gov (United States)

    Riès, D.; Dilecce, G.; Robert, E.; Ambrico, P. F.; Dozias, S.; Pouvesle, J.-M.

    2014-07-01

    In the field of biomedical application, many publications report on non-thermal plasma jet potentialities for cell behaviour modifications in cancer treatment, wound healing or sterilization. However most previous plasma jet characterizations were performed when jets expend freely in air. Only recently has the influence of the targeted surface been properly considered. In this work, modifications induced by various types of targets, mimicking the biological samples, in the plasma propagation and production of hydroxyl radicals are evidenced through time-resolved intensified charge-coupled device imaging and laser-induced fluorescence (LIF) measurements. A LIF model, also specifically dedicated to estimate air and water penetration inside the jet, is used and proves to be well adapted to characterize the plasma jet under biomedical application conditions. It is shown that the plasma produced by the plasma gun counter-propagates after impinging the surface which, for the same operating parameters, leads to an increase of almost one order of magnitude in the maximum OH density (from ˜2 × 1013 cm-3 for open-air propagation to ˜1 × 1014 cm-3 for a grounded metal target). The nature of the target, especially its electrical conductivity, as well as gas flow rate and voltage amplitude are playing a key role in the production of hydroxyl radicals. The strong interplay between gas flow dynamics and plasma propagation is here confirmed by air and water distribution measurements. The need for a multi-diagnostic approach, as well as great care in setting up the in situ characterization of plasma jets, is here emphasized. Special attention must not only be paid to voltage amplitude and gas flow rate but also to the nature, humidity and conductivity of the target.

  12. Optical imaging of cancer and cell death

    NARCIS (Netherlands)

    Xie, Bangwen

    2013-01-01

    The aim of the work included in this PhD thesis was to explore the diverse application possibility of using NIR fluorescent probes with specific properties to visualize and characterize cancer and cell death. In this thesis, we mainly focus on optical imaging and its application, both at microscopic

  13. Exploiting data redundancy in computational optical imaging.

    Science.gov (United States)

    Munro, Peter R T

    2015-11-30

    We present an algorithm which exploits data redundancy to make computational, coherent, optical imaging more computationally efficient. This algorithm specifically addresses the computation of how light scattered by a sample is collected and coherently detected. It is of greatest benefit in the simulation of broadband optical systems employing coherent detection, such as optical coherence tomography. Although also amenable to time-harmonic data, the algorithm is designed to be embedded within time-domain electromagnetic scattering simulators such as the psuedo-spectral and finite-difference time domain methods. We derive the algorithm in detail as well as criteria which ensure accurate execution of the algorithm. We present simulations that verify the developed algorithm and demonstrate its utility. We expect this algorithm to be important to future developments in computational imaging.

  14. Handbook of Coherent-Domain Optical Methods Biomedical Diagnostics, Environmental Monitoring, and Materials Science

    CERN Document Server

    2013-01-01

    This Handbook provides comprehensive coverage of laser and coherent-domain methods as applied to biomedicine, environmental monitoring, and materials science. Worldwide leaders in these fields describe the fundamentals of light interaction with random media and present an overview of basic research. The latest results on coherent and polarization properties of light scattered by random media, including tissues and blood, speckles formation in multiple scattering media, and other non-destructive interactions of coherent light with rough surfaces and tissues, allow the reader to understand the principles and applications of coherent diagnostic techniques. The expanded second edition has been thoroughly updated with particular emphasis on novel coherent-domain techniques and their applications in medicine and environmental science. Volume 1 describes state-of-the-art methods of coherent and polarization optical imaging, tomography and spectroscopy; diffusion wave spectroscopy; elastic, quasi-elastic and inelasti...

  15. Fast optical imaging of human brain function

    Directory of Open Access Journals (Sweden)

    Gabriele Gratton

    2010-06-01

    Full Text Available Great advancements in brain imaging during the last few decades have opened a large number of new possibilities for neuroscientists. The most dominant methodologies (electrophysiological and magnetic resonance-based methods emphasize temporal and spatial information, respectively. However, theorizing about brain function has recently emphasized the importance of rapid (within 100 ms or so interactions between different elements of complex neuronal networks. Fast optical imaging, and in particular the event-related optical signal (EROS, a technology that has emerged over the last 15 years may provide descriptions of localized (to sub-cm level brain activity with a temporal resolution of less than 100 ms. The main limitations of EROS are its limited penetration, which allows us to image cortical structures not deeper than 3 cm from the surface of the head, and its low signal-to-noise ratio. Advantages include the fact that EROS is compatible with most other imaging methods, including electrophysiological, magnetic resonance, and trans-cranial magnetic stimulation techniques, with which can be recorded concurrently. In this paper we present a summary of the research that has been conducted so far on fast optical imaging, including evidence for the possibility of recording neuronal signals with this method, the properties of the signals, and various examples of applications to the study of human cognitive neuroscience. Extant issues, controversies, and possible future developments are also discussed.

  16. BIOLUMINESCENCE TOMOGRAPHY: BIOMEDICAL BACKGROUND, MATHEMATICAL THEORY, AND NUMERICAL APPROXIMATION

    Institute of Scientific and Technical Information of China (English)

    Weimin Han; Ce Wang

    2008-01-01

    Over the last couple of years molecular imaging has been rapidly developed to study physiological and pathological processes in vivo at the cellular and molecular levels. Among molecular imaging modalities, optical imaging stands out for its unique advantages, especially performance and cost-effectiveness. Bioluminescence tomography (BLT) is an emerging optical imaging mode with promising biomedical advantages. In this survey paper, we explain the biomedical significance of BLT, summarize theoretical results on the analysis and numerical solution of a diffusion based BLT model, and comment on a few extensions for the study of BLT.

  17. Automated segmentation of synchrotron radiation micro-computed tomography biomedical images using Graph Cuts and neural networks

    Science.gov (United States)

    Alvarenga de Moura Meneses, Anderson; Giusti, Alessandro; de Almeida, André Pereira; Parreira Nogueira, Liebert; Braz, Delson; Cely Barroso, Regina; deAlmeida, Carlos Eduardo

    2011-12-01

    Synchrotron Radiation (SR) X-ray micro-Computed Tomography (μCT) enables magnified images to be used as a non-invasive and non-destructive technique with a high space resolution for the qualitative and quantitative analyses of biomedical samples. The research on applications of segmentation algorithms to SR-μCT is an open problem, due to the interesting and well-known characteristics of SR images for visualization, such as the high resolution and the phase contrast effect. In this article, we describe and assess the application of the Energy Minimization via Graph Cuts (EMvGC) algorithm for the segmentation of SR-μCT biomedical images acquired at the Synchrotron Radiation for MEdical Physics (SYRMEP) beam line at the Elettra Laboratory (Trieste, Italy). We also propose a method using EMvGC with Artificial Neural Networks (EMANNs) for correcting misclassifications due to intensity variation of phase contrast, which are important effects and sometimes indispensable in certain biomedical applications, although they impair the segmentation provided by conventional techniques. Results demonstrate considerable success in the segmentation of SR-μCT biomedical images, with average Dice Similarity Coefficient 99.88% for bony tissue in Wistar Rats rib samples (EMvGC), as well as 98.95% and 98.02% for scans of Rhodnius prolixus insect samples (Chagas's disease vector) with EMANNs, in relation to manual segmentation. The techniques EMvGC and EMANNs cope with the task of performing segmentation in images with the intensity variation due to phase contrast effects, presenting a superior performance in comparison to conventional segmentation techniques based on thresholding and linear/nonlinear image filtering, which is also discussed in the present article.

  18. Automated segmentation of synchrotron radiation micro-computed tomography biomedical images using Graph Cuts and neural networks

    Energy Technology Data Exchange (ETDEWEB)

    Alvarenga de Moura Meneses, Anderson, E-mail: ameneses@ieee.org [Radiological Sciences Laboratory, Rio de Janeiro State University, Rua Sao Francisco Xavier 524, CEP 20550-900, RJ (Brazil); Giusti, Alessandro [IDSIA (Dalle Molle Institute for Artificial Intelligence), University of Lugano (Switzerland); Pereira de Almeida, Andre; Parreira Nogueira, Liebert; Braz, Delson [Nuclear Engineering Program, Federal University of Rio de Janeiro, RJ (Brazil); Cely Barroso, Regina [Laboratory of Applied Physics on Biomedical Sciences, Physics Department, Rio de Janeiro State University, RJ (Brazil); Almeida, Carlos Eduardo de [Radiological Sciences Laboratory, Rio de Janeiro State University, Rua Sao Francisco Xavier 524, CEP 20550-900, RJ (Brazil)

    2011-12-21

    Synchrotron Radiation (SR) X-ray micro-Computed Tomography ({mu}CT) enables magnified images to be used as a non-invasive and non-destructive technique with a high space resolution for the qualitative and quantitative analyses of biomedical samples. The research on applications of segmentation algorithms to SR-{mu}CT is an open problem, due to the interesting and well-known characteristics of SR images for visualization, such as the high resolution and the phase contrast effect. In this article, we describe and assess the application of the Energy Minimization via Graph Cuts (EMvGC) algorithm for the segmentation of SR-{mu}CT biomedical images acquired at the Synchrotron Radiation for MEdical Physics (SYRMEP) beam line at the Elettra Laboratory (Trieste, Italy). We also propose a method using EMvGC with Artificial Neural Networks (EMANNs) for correcting misclassifications due to intensity variation of phase contrast, which are important effects and sometimes indispensable in certain biomedical applications, although they impair the segmentation provided by conventional techniques. Results demonstrate considerable success in the segmentation of SR-{mu}CT biomedical images, with average Dice Similarity Coefficient 99.88% for bony tissue in Wistar Rats rib samples (EMvGC), as well as 98.95% and 98.02% for scans of Rhodnius prolixus insect samples (Chagas's disease vector) with EMANNs, in relation to manual segmentation. The techniques EMvGC and EMANNs cope with the task of performing segmentation in images with the intensity variation due to phase contrast effects, presenting a superior performance in comparison to conventional segmentation techniques based on thresholding and linear/nonlinear image filtering, which is also discussed in the present article.

  19. Analysis of optical amplifier noise in coherent optical communication systems with optical image rejection receivers

    DEFF Research Database (Denmark)

    Jørgensen, Bo Foged; Mikkelsen, Benny; Mahon, Cathal J.

    1992-01-01

    performance. Two types of optical image rejection receivers are investigated: a novel, all-optical configuration and the conventional, microwave-based configuration. The analysis shows that local oscillator-spontaneous emission beat noise (LO-SP), signal-spontaneous emission beat noise (S-SP), and spontaneous......-spontaneous beat noise (SP-SP) can all be reduced by 3 dB, thereby doubling the dynamic range of the optical amplifier. A 2.5-dB improvement in dynamic range has been demonstrated experimentally with the all-optical image rejection configuration. The implications of the increased dynamic range thus obtained...

  20. Contributions on biomedical imaging, with a side-look at molecular imaging; Beitraege zur biomedizinischen Bildgebung mit einem Seitenblick auf Molecular Imaging

    Energy Technology Data Exchange (ETDEWEB)

    Winkler, G. (ed.)

    2004-05-01

    This report is intended as a brief introduction to the emerging scientific field of biomedical imaging. The breadth of the subject is shown and future fields of research are indicated, which hopefully will serve as a guide to the identification of starting points for the research in 'Biomedical and/or Molecular Imaging' at the GSF-National Research Center for Environment and Health. The report starts with a brief sketch of the history. Then a - necessarily incomplete - list of research topics is presented. It is organized in two parts: the first one addresses medical imaging, and the second one is concerned with biological point aspects of the matter. (orig.) [German] In diesem Bericht sind einige Beitraege zum Gebiet 'Bildgebende Verfahren in Biologie und Medizin' zusammengestellt. Sie stammen saemtlich aus dem Institut fuer Biomathematik und Biometrie, IBB, am Forschungszentrum fuer Umwelt und Gesundheit, GSF, in Muenchen/Neuherberg, und seinem engeren Umfeld. Ziel war es, zu sichten, was in und um diesen Themenkreis herum an Wissen und sonstiger Kompetenz hier vorhanden ist. Einige am IBB etablierte Gebiete wie Roentgen-Mammographie oder funktionelle Magnetresonanztherapie wurden ausgeblendet. Der Grund ist die Fokussierung auf ein nicht exakt definierbares, neues Gebiet der Bildgebung, das unter dem Namen 'Molecular Imaging' kursiert und derzeit Furore macht macht. (orig.)

  1. Horizontal Shear Wave Imaging of Large Optics

    Energy Technology Data Exchange (ETDEWEB)

    Quarry, M J

    2007-09-05

    When complete the National Ignition Facility (NIF) will be the world's largest and most energetic laser and will be capable of achieving for the first time fusion ignition in the laboratory. Detecting optics features within the laser beamlines and sizing them at diameters of 0.1 mm to 10 mm allows timely decisions concerning refurbishment and will help with the routine operation of the system. Horizontally polarized shear waves at 10 MHz were shown to accurately detect, locate, and size features created by laser operations from 0.5 mm to 8 mm by placing sensors at the edge of the optic. The shear wave technique utilizes highly directed beams. The outer edge of an optic can be covered with shear wave transducers on four sides. Each transducer sends a pulse into the optic and any damage reflects the pulse back to the transmitter. The transducers are multiplexed, and the collected time waveforms are enveloped and replicated across the width of the element. Multiplying the data sets from four directions produces a map of reflected amplitude to the fourth power, which images the surface of the optic. Surface area can be measured directly from the image, and maximum depth was shown to be correlated to maximum amplitude of the reflected waveform.

  2. RNA aptamer probes as optical imaging agents for the detection of amyloid plaques.

    Directory of Open Access Journals (Sweden)

    Christian T Farrar

    Full Text Available Optical imaging using multiphoton microscopy and whole body near infrared imaging has become a routine part of biomedical research. However, optical imaging methods rely on the availability of either small molecule reporters or genetically encoded fluorescent proteins, which are challenging and time consuming to develop. While directly labeled antibodies can also be used as imaging agents, antibodies are species specific, can typically not be tagged with multiple fluorescent reporters without interfering with target binding, and are bioactive, almost always eliciting a biological response and thereby influencing the process that is being studied. We examined the possibility of developing highly specific and sensitive optical imaging agents using aptamer technology. We developed a fluorescently tagged anti-Aβ RNA aptamer, β55, which binds amyloid plaques in both ex vivo human Alzheimer's disease brain tissue and in vivo APP/PS1 transgenic mice. Diffuse β55 positive halos, attributed to oligomeric Aβ, were observed surrounding the methoxy-XO4 positive plaque cores. Dot blots of synthetic Aβ aggregates provide further evidence that β55 binds both fibrillar and non-fibrillar Aβ. The high binding affinity, the ease of probe development, and the ability to incorporate multiple and multimodal imaging reporters suggest that RNA aptamers may have complementary and perhaps advantageous properties compared to conventional optical imaging probes and reporters.

  3. Progress toward automatic classification of human brown adipose tissue using biomedical imaging

    Science.gov (United States)

    Gifford, Aliya; Towse, Theodore F.; Walker, Ronald C.; Avison, Malcom J.; Welch, E. B.

    2015-03-01

    Brown adipose tissue (BAT) is a small but significant tissue, which may play an important role in obesity and the pathogenesis of metabolic syndrome. Interest in studying BAT in adult humans is increasing, but in order to quantify BAT volume in a single measurement or to detect changes in BAT over the time course of a longitudinal experiment, BAT needs to first be reliably differentiated from surrounding tissue. Although the uptake of the radiotracer 18F-Fluorodeoxyglucose (18F-FDG) in adipose tissue on positron emission tomography (PET) scans following cold exposure is accepted as an indication of BAT, it is not a definitive indicator, and to date there exists no standardized method for segmenting BAT. Consequently, there is a strong need for robust automatic classification of BAT based on properties measured with biomedical imaging. In this study we begin the process of developing an automated segmentation method based on properties obtained from fat-water MRI and PET-CT scans acquired on ten healthy adult subjects.

  4. Image Distortion of Optical Coherence Tomography

    Institute of Scientific and Technical Information of China (English)

    安源; 姚建铨

    2004-01-01

    A kind of image distortion in Optical Coherence Tomography (OCT) resulted from average refractive index changes between structures of bio-tissue is discussed for the first time.Analysis is given on following situations:1) Exact refraction index changes between microstructures;2)The gradient of average refractive index change between different tissue layers is parallel to the probe beam;3) The gradient of average refractive index change is vertical to the probe beam.The results show that the image distortion of situation 1) is usually negligible;in situation 2) there is a spread or shrink effect without relative location error; however,in situation 3) there is a significant image error inducing relative location displacement between different structures.Preliminary design to eliminate the distortion is presented,the method of which mainly based on the image classification and pixel array re-arrangement.

  5. Studies on thermo-optic property of chitosan–alizarin yellow GG complex: a direction for devices for biomedical applications

    Indian Academy of Sciences (India)

    Nidhi Nigam; Santosh Kumar; Pradip Kumar Dutta; Tamal Ghosh

    2015-10-01

    The optical parameters including the refractive index () and thermo-optic coefficient, TOC (d/d), the dielectric constant () and its variation with temperature, and the thermal volume expansion coefficient () and its variation with temperature of chitosan–alizarin yellow GG (CS–AY GG) complex were examined. The dn/dT and - values for the polymer derivative were in the range −2.5 × 10−4 to 1.2 × 10−4° C−1 and 2.2 to 2.3, respectively. The dn/dT values were larger than that of inorganic glasses such as zinc silicate glass (5.5 × 10−6° C−1) and borosilicate glass (4.1 × 10−6° C−1) and were larger than that of organic polymers such as polystyrene (−1.23 × 10−4 ° C−1) and PMMA (−1.20 × 10−4 ° C−1). The -values are lower than optically estimated -values of conventional polymer (3.00), aliphatic polyimide (2.5) and semi-aromatic polyamide (2.83). The obtained results of chitosan derivative are expected to be useful for optical switching and optical waveguide areas for devices of biomedical applications.

  6. Final Report for The University of Texas at Arlington Optical Medical Imaging Section of Advanced Imaging Research Center

    Energy Technology Data Exchange (ETDEWEB)

    Khosrow Behbehani

    2013-02-26

    The goal of this project was to create state-of-the-art optical medical imaging laboratories for the Biomedical Engineering faculty and student researchers of the University of Texas at Arlington (UTA) on the campus of the University of Texas Southwestern Medical Center (UTSW). This has been successfully achieved. These laboratories provide an unprecedented opportunity for the bioengineers (from UTA) to bring about new breakthroughs in medical imaging using optics. Specifically, three major laboratories have been successfully established and state-of-the-art scientific instruments have been placed in the labs. As a result of this grant, numerous journal and conference publications have been generated, patents for new inventions have been filed and received, and many additional grants for the continuation of the research has been received.

  7. Electro-optic imaging Fourier transform spectrometer

    Science.gov (United States)

    Chao, Tien-Hsin (Inventor); Znod, Hanying (Inventor)

    2009-01-01

    An Electro-Optic Imaging Fourier Transform Spectrometer (EOIFTS) for Hyperspectral Imaging is described. The EOIFTS includes an input polarizer, an output polarizer, and a plurality of birefringent phase elements. The relative orientations of the polarizers and birefringent phase elements can be changed mechanically or via a controller, using ferroelectric liquid crystals, to substantially measure the spectral Fourier components of light propagating through the EIOFTS. When achromatic switches are used as an integral part of the birefringent phase elements, the EIOFTS becomes suitable for broadband applications, with over 1 micron infrared bandwidth.

  8. Novel optical system for neonatal brain imaging

    Science.gov (United States)

    Chen, Yu; Zhou, Shuoming; Nioka, Shoko; Chance, Britton; Anday, Endla; Ravishankar, Sudha; Delivoria-Papadopoulos, Maria

    1999-03-01

    A highly portable, fast, safe and affordable imaging system that provides interpretable images of brain function in full- and pre-term neonates within a few seconds has been applied to neonates with normal and pathological states. We have used a uniquely sensitive optical tomography system, termed phased array, which has revealed significant functional responses, particularly to parietal stimulation in neonate brain. This system can indicate the blood concentration and oxygenation change during the parietal brain activation in full- and pre-term neonates. The preliminary clinical results, especially a longitudinal study of a cardiac arrest neonate, suggest a variety of future applications.

  9. Optical Imaging and Microscopy Techniques and Advanced Systems

    CERN Document Server

    Török, Peter

    2007-01-01

    This text on contemporary optical systems is intended for optical researchers and engineers, graduate students and optical microscopists in the biological and biomedical sciences. This second edition contains two completely new chapters. In addition most of the chapters from the first edition have been revised and updated. The book consists of three parts: The first discusses high-aperture optical systems, which form the backbone of optical microscopes. An example is a chapter new in the second edition on the emerging field of high numerical aperture diffractive lenses which seems to have particular promise in improving the correction of lenses. In this part particular attention is paid to optical data storage. The second part is on the use of non-linear optical techniques, including nonlinear optical excitation (total internal reflection fluorescence, second and third harmonic generation and two photon microscopy) and non-linear spectroscopy (CARS). The final part of the book presents miscellaneous technique...

  10. 7th International Workshop on Advanced Optical Imaging and Metrology

    CERN Document Server

    2014-01-01

    In continuation of the FRINGE Workshop Series this Proceeding contains all contributions presented at the 7. International Workshop on Advanced Optical Imaging and Metrology. The FRINGE Workshop Series is dedicated to the presentation, discussion and dissemination of recent results in Optical Imaging and Metrology. Topics of particular interest for the 7. Workshop are: - New methods and tools for the generation, acquisition, processing, and evaluation of data in Optical Imaging and Metrology (digital wavefront engineering, computational imaging, model-based reconstruction, compressed sensing, inverse problems solution) - Application-driven technologies in Optical Imaging and Metrology (high-resolution, adaptive, active, robust, reliable, flexible, in-line, real-time) - High-dynamic range solutions in Optical Imaging and Metrology (from macro to nano) - Hybrid technologies in Optical Imaging and Metrology (hybrid optics, sensor and data fusion, model-based solutions, multimodality) - New optical sensors, imagi...

  11. Scintillating Optical Fiber Imagers for biology

    International Nuclear Information System (INIS)

    S.O.F.I (Scintillating Optical Fiber Imager) is a detector developed to replace the autoradiographic films used in molecular biology for the location of radiolabelled (32P) DNA molecules in blotting experiments. It analyses samples on a 25 x 25 cm2 square area still 25 times faster than autoradiographic films, with a 1.75 and 3 mm resolution for two orthogonal directions. This device performs numerised images with a dynamic upper than 100 which allows the direct quantitation of the analysed samples. First, this thesis describes the S.O.F.I. development (Scintillating Optical Fibers, coding of these fibers and specific electronic for the treatment of the Multi-Anode Photo-Multiplier signals) and experiments made in collaboration with molecular biology laboratories. In a second place, we prove the feasibility of an automatic DNA sequencer issued from S.O.F.I

  12. IOT Overview: Optical Spectro-Imagers

    Science.gov (United States)

    Patat, F.

    Taking the FORS instruments as a representative case, I review the Calibration Plan for optical spectro-imagers currently offered at ESO, discussing various aspects related both to the scientific outcome and the instrument/site monitoring. I also describe ongoing and future calibration projects planned by the Instrument Operations Teams, trying to give an objective view on the limitations of the Calibration Plans currently implemented at ESO for this class of instruments.

  13. Biomedical image representation approach using visualness and spatial information in a concept feature space for interactive region-of-interest-based retrieval.

    Science.gov (United States)

    Rahman, Md Mahmudur; Antani, Sameer K; Demner-Fushman, Dina; Thoma, George R

    2015-10-01

    This article presents an approach to biomedical image retrieval by mapping image regions to local concepts where images are represented in a weighted entropy-based concept feature space. The term "concept" refers to perceptually distinguishable visual patches that are identified locally in image regions and can be mapped to a glossary of imaging terms. Further, the visual significance (e.g., visualness) of concepts is measured as the Shannon entropy of pixel values in image patches and is used to refine the feature vector. Moreover, the system can assist the user in interactively selecting a region-of-interest (ROI) and searching for similar image ROIs. Further, a spatial verification step is used as a postprocessing step to improve retrieval results based on location information. The hypothesis that such approaches would improve biomedical image retrieval is validated through experiments on two different data sets, which are collected from open access biomedical literature.

  14. Mono- and multimodal registration of optical breast images

    Science.gov (United States)

    Pearlman, Paul C.; Adams, Arthur; Elias, Sjoerd G.; Mali, Willem P. Th. M.; Viergever, Max A.; Pluim, Josien P. W.

    2012-08-01

    Optical breast imaging offers the possibility of noninvasive, low cost, and high sensitivity imaging of breast cancers. Poor spatial resolution and a lack of anatomical landmarks in optical images of the breast make interpretation difficult and motivate registration and fusion of these data with subsequent optical images and other breast imaging modalities. Methods used for registration and fusion of optical breast images are reviewed. Imaging concerns relevant to the registration problem are first highlighted, followed by a focus on both monomodal and multimodal registration of optical breast imaging. Where relevant, methods pertaining to other imaging modalities or imaged anatomies are presented. The multimodal registration discussion concerns digital x-ray mammography, ultrasound, magnetic resonance imaging, and positron emission tomography.

  15. Automated hexahedral mesh generation from biomedical image data: applications in limb prosthetics.

    Science.gov (United States)

    Zachariah, S G; Sanders, J E; Turkiyyah, G M

    1996-06-01

    A general method to generate hexahedral meshes for finite element analysis of residual limbs and similar biomedical geometries is presented. The method utilizes skeleton-based subdivision of cross-sectional domains to produce simple subdomains in which structured meshes are easily generated. Application to a below-knee residual limb and external prosthetic socket is described. The residual limb was modeled as consisting of bones, soft tissue, and skin. The prosthetic socket model comprised a socket wall with an inner liner. The geometries of these structures were defined using axial cross-sectional contour data from X-ray computed tomography, optical scanning, and mechanical surface digitization. A tubular surface representation, using B-splines to define the directrix and generator, is shown to be convenient for definition of the structure geometries. Conversion of cross-sectional data to the compact tubular surface representation is direct, and the analytical representation simplifies geometric querying and numerical optimization within the mesh generation algorithms. The element meshes remain geometrically accurate since boundary nodes are constrained to lie on the tubular surfaces. Several element meshes of increasing mesh density were generated for two residual limbs and prosthetic sockets. Convergence testing demonstrated that approximately 19 elements are required along a circumference of the residual limb surface for a simple linear elastic model. A model with the fibula absent compared with the same geometry with the fibula present showed differences suggesting higher distal stresses in the absence of the fibula. Automated hexahedral mesh generation algorithms for sliced data represent an advancement in prosthetic stress analysis since they allow rapid modeling of any given residual limb and optimization of mesh parameters.

  16. Diode laser based light sources for biomedical applications

    DEFF Research Database (Denmark)

    Müller, André; Marschall, Sebastian; Jensen, Ole Bjarlin;

    2013-01-01

    Diode lasers are by far the most efficient lasers currently available. With the ever-continuing improvement in diode laser technology, this type of laser has become increasingly attractive for a wide range of biomedical applications. Compared to the characteristics of competing laser systems, diode...... lasers simultaneously offer tunability, high-power emission and compact size at fairly low cost. Therefore, diode lasers are increasingly preferred in important applications, such as photocoagulation, optical coherence tomography, diffuse optical imaging, fluorescence lifetime imaging, and terahertz...... imaging. This review provides an overview of the latest development of diode laser technology and systems and their use within selected biomedical applications....

  17. Imaging Granulomatous Lesions with Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Christina Banzhaf

    2012-01-01

    Full Text Available Aim: To investigate and compare the presentation of granulomatous lesions in optical coherence tomography (OCT images and compare this to previous studies of nonmelanoma skin tumors. Methods: Two patients with granulomas, tophi and granuloma annulare (GA, respectively, were photographed digitally, OCT-scanned and biopsied in the said order. Normal skin was OCT-scanned for comparison, but not biopsied. The OCT images from each lesion were compared with their histologic images as well as with OCT images with similar characteristics obtained from nonmelanoma skin tumors. Results: The OCT images of the tophi showed hyperreflective, rounded cloud-like structures in dermis, their upper part sharply delineated by a hyporeflective fringe. The deeper areas appeared blurred. The crystalline structures were delineated by a hyporeflective fringe. OCT images of GA showed two different structures in dermis: a hyporeflective rounded one, and one that was lobulated and wing-like. Conclusion: Granulomatous tissue surrounding urate deposits appeared as a clear hyporeflective fringe surrounding a light, hyperreflective area. The urate crystals appeared as hyperreflective areas, shielding the deeper part of dermis, meaning OCT could only visualize the upper part of the lesions. The lobulated, wing-like structure in GA may resemble diffuse GA or a dense lymphocytic infiltrate as seen on histology. The rounded structure in GA may represent an actual granuloma or either diffuse GA or a dense lymphocytic infiltrate as described above. This case suggests that OCT images granulomatous tissue as absorbent, hyporeflective areas, and urate crystals appear as reflective areas, obscuring the underlying tissue. In GA a new image shape looking like a wing has been found. The frequency, specificity and sensitivity of this new pattern in OCT imaging will require further studies.

  18. Luminescent probes for optical in vivo imaging

    Science.gov (United States)

    Texier, Isabelle; Josserand, Veronique; Garanger, Elisabeth; Razkin, Jesus; Jin, Zhaohui; Dumy, Pascal; Favrot, Marie; Boturyn, Didier; Coll, Jean-Luc

    2005-04-01

    Going along with instrumental development for small animal fluorescence in vivo imaging, we are developing molecular fluorescent probes, especially for tumor targeting. Several criteria have to be taken into account for the optimization of the luminescent label. It should be adapted to the in vivo imaging optical conditions : red-shifted absorption and emission, limited overlap between absorption and emission for a good signal filtering, optimized luminescence quantum yield, limited photo-bleaching. Moreover, the whole probe should fulfill the biological requirements for in vivo labeling : adapted blood-time circulation, biological conditions compatibility, low toxicity. We here demonstrate the ability of the imaging fluorescence set-up developed in LETI to image the bio-distribution of molecular probes on short times after injection. Targeting with Cy5 labeled holo-transferrin of subcutaneous TS/Apc (angiogenic murine breast carcinoma model) or IGROV1 (human ovarian cancer) tumors was achieved. Differences in the kinetics of the protein uptake by the tumors were evidenced. IGROV1 internal metastatic nodes implanted in the peritoneal cavity could be detected in nude mice. However, targeted metastatic nodes in lung cancer could only be imaged after dissection of the mouse. These results validate our fluorescence imaging set-up and the use of Cy5 as a luminescent label. New fluorescent probes based on this dye and a molecular delivery template (the RAFT molecule) can thus be envisioned.

  19. ESO Imaging survey: Optical Deep Public Survey

    CERN Document Server

    Mignano, A; Costa, L; Olsen, L F; Prandoni, I; Arnouts, S; Benoist, C; Dietrich, J P; Madejsky, R; Slijkhuis, R; Zaggia, S

    2006-01-01

    This paper presents new five passbands (UBVRI) optical wide-field imaging data accumulated as part of the DEEP Public Survey (DPS) carried out as a public survey by the ESO Imaging Survey (EIS) project. Out of the 3 square degrees originally proposed, the survey covers 2.75 square degrees, in at least one band (normally R), and 1.00 square degrees in five passbands. The median seeing, as measured in the final stacked images, is 0.97", ranging from 0.75" to 2.0". The median limiting magnitudes (AB system, 2" aperture, 5 sigma detection limit) are U_(AB)=25.65, B_(AB)=25.54, V_(AB)=25.18, R_(AB) = 24.8 and I_(AB)=24.12 mag, consistent with those proposed in the original survey design. The paper describes the observations and data reduction using the EIS Data Reduction System and its associated EIS/MVM library. The quality of the individual images were inspected, bad images discarded and the remaining used to produce final image stacks in each passband, from which sources have been extracted. Finally, the scient...

  20. RADIANCE AND PHOTON NOISE: Imaging in geometrical optics, physical optics, quantum optics and radiology

    Science.gov (United States)

    Barrett, Harrison H.; Myers, Kyle J.; Caucci, Luca

    2016-01-01

    A fundamental way of describing a photon-limited imaging system is in terms of a Poisson random process in spatial, angular and wavelength variables. The mean of this random process is the spectral radiance. The principle of conservation of radiance then allows a full characterization of the noise in the image (conditional on viewing a specified object). To elucidate these connections, we first review the definitions and basic properties of radiance as defined in terms of geometrical optics, radiology, physical optics and quantum optics. The propagation and conservation laws for radiance in each of these domains are reviewed. Then we distinguish four categories of imaging detectors that all respond in some way to the incident radiance, including the new category of photon-processing detectors. The relation between the radiance and the statistical properties of the detector output is discussed and related to task-based measures of image quality and the information content of a single detected photon.

  1. Photo-magnetic Imaging: Resolving Optical Contrast at MRI resolution

    OpenAIRE

    Lin, Yuting; Gao, Hao; Thayer, David; Luk, Alex L.; Gulsen, Gultekin

    2013-01-01

    In this paper, we establish the mathematical framework of a novel imaging technique, namely Photo-magnetic Imaging (PMI). PMI uses laser to illuminate biological tissues and measure the induced temperature variations using magnetic resonance imaging (MRI). PMI overcomes the limitation of conventional optical imaging and allows imaging of optical contrast at MRI spatial resolution. The image reconstruction for PMI, using a finite element-based algorithm with iterative approach, is presented in...

  2. Image Deblurring Using Derivative Compressed Sensing for Optical Imaging Application

    CERN Document Server

    Rostami, Mohammad; Wang, Zhou

    2011-01-01

    Reconstruction of multidimensional signals from the samples of their partial derivatives is known to be a standard problem in inverse theory. Such and similar problems routinely arise in numerous areas of applied sciences, including optical imaging, laser interferometry, computer vision, remote sensing and control. Though being ill-posed in nature, the above problem can be solved in a unique and stable manner, provided proper regularization and relevant boundary conditions. In this paper, however, a more challenging setup is addressed, in which one has to recover an image of interest from its noisy and blurry version, while the only information available about the imaging system at hand is the amplitude of the generalized pupil function (GPF) along with partial observations of the gradient of GPF's phase. In this case, the phase-related information is collected using a simplified version of the Shack-Hartmann interferometer, followed by recovering the entire phase by means of derivative compressed sensing. Su...

  3. Poly(ethylene oxide)-silica hybrids entrapping sensitive dyes for biomedical optical pH sensors: Molecular dynamics and optical response

    Science.gov (United States)

    Fabbri, Paola; Pilati, Francesco; Rovati, Luigi; McKenzie, Ruel; Mijovic, Jovan

    2011-06-01

    Polymer-silica hybrid nanocomposites prepared by sol-gel process based on triethoxisilane-terminated poly(ethylene oxide) chains and tetraethoxysilane as silica precursor, doped with organic pH sensitive dyes, have been prepared and their suitability for use as sensors coupled with plastic optic fibers has been evaluated. Sensors were prepared by immobilizing a drop of the hybrid materials onto the tip of a multi-mode poly(methyl methacrylate) optical fiber. The performance of the optical sensor in terms of sensitivity and response time was tested in different experimental conditions, and was found to be markedly higher than analogous sensors present on the market. The very fast kinetic of the hybrid's optical response was supported by studies performed at the molecular level by broadband dielectric relaxation spectroscopy (DRS), investigated over a wide range of frequency and temperature, showing that poly(ethylene oxide) chains maintain their dynamics even when covalently bonded to silica domains, which decrease the self-association interactions and promote motions of polymer chain segments. Due to the fast response kinetic observed, these pH optical sensors result suitable for the fast-detection of biomedical parameters, i.e. fast esophageous pH-metry.

  4. A photonic crystal cavity-optical fiber tip nanoparticle sensor for biomedical applications

    OpenAIRE

    Shambat, Gary; Kothapalli, Sri Rajasekhar; Khurana, Aman; Provine, J; Sarmiento, Tomas; Cheng, Kai; Cheng, Zhen; HARRIS, JAMES; Daldrup-Link, Heike; Gambhir, Sanjiv Sam; Vuckovic, Jelena

    2012-01-01

    We present a sensor capable of detecting solution-based nanoparticles using an optical fiber tip functionalized with a photonic crystal cavity. When sensor tips are retracted from a nanoparticle solution after being submerged, we find that a combination of convective fluid forces and optically-induced trapping cause an aggregation of nanoparticles to form directly on cavity surfaces. A simple readout of quantum dot photoluminescence coupled to the optical fiber shows that nanoparticle presenc...

  5. Surface chemistry manipulation of gold nanorods preserves optical properties for bio-imaging applications

    International Nuclear Information System (INIS)

    Due to their anisotropic shape, gold nanorods (GNRs) possess a number of advantages for biosystem use including, enhanced surface area and tunable optical properties within the near-infrared (NIR) region. However, cetyl trimethylammonium bromide-related cytotoxicity, overall poor cellular uptake following surface chemistry modifications, and loss of NIR optical properties due to material intracellular aggregation in combination remain as obstacles for nanobased biomedical GNR applications. In this article, we report that tannic acid-coated 11-mercaptoundecyl trimethylammonium bromide (MTAB) GNRs (MTAB-TA) show no significant decrease in either in vitro cell viability or stress activation after exposures to A549 human alveolar epithelial cells. In addition, MTAB-TA GNRs demonstrate a substantial level of cellular uptake while displaying a unique intracellular clustering pattern. This clustering pattern significantly reduces intracellular aggregation, preserving the GNRs NIR optical properties, vital for biomedical imaging applications. These results demonstrate how surface chemistry modifications enhance biocompatibility, allow for higher rate of internalization with low intracellular aggregation of MTAB-TA GNRs, and identify them as prime candidates for use in nanobased bio-imaging applications.Graphical Abstract

  6. Surface chemistry manipulation of gold nanorods preserves optical properties for bio-imaging applications

    Energy Technology Data Exchange (ETDEWEB)

    Polito, Anthony B.; Maurer-Gardner, Elizabeth I.; Hussain, Saber M., E-mail: saber.hussain@us.af.mil [Air Force Research Laboratory, Molecular Bioeffects Branch, Bioeffects Division, Human Effectiveness Directorate (United States)

    2015-12-15

    Due to their anisotropic shape, gold nanorods (GNRs) possess a number of advantages for biosystem use including, enhanced surface area and tunable optical properties within the near-infrared (NIR) region. However, cetyl trimethylammonium bromide-related cytotoxicity, overall poor cellular uptake following surface chemistry modifications, and loss of NIR optical properties due to material intracellular aggregation in combination remain as obstacles for nanobased biomedical GNR applications. In this article, we report that tannic acid-coated 11-mercaptoundecyl trimethylammonium bromide (MTAB) GNRs (MTAB-TA) show no significant decrease in either in vitro cell viability or stress activation after exposures to A549 human alveolar epithelial cells. In addition, MTAB-TA GNRs demonstrate a substantial level of cellular uptake while displaying a unique intracellular clustering pattern. This clustering pattern significantly reduces intracellular aggregation, preserving the GNRs NIR optical properties, vital for biomedical imaging applications. These results demonstrate how surface chemistry modifications enhance biocompatibility, allow for higher rate of internalization with low intracellular aggregation of MTAB-TA GNRs, and identify them as prime candidates for use in nanobased bio-imaging applications.Graphical Abstract.

  7. Optical Methods and Instrumentation in Brain Imaging and Therapy

    CERN Document Server

    2013-01-01

    This book provides a comprehensive up-to-date review of optical approaches used in brain imaging and therapy. It covers a variety of imaging techniques including diffuse optical imaging, laser speckle imaging, photoacoustic imaging and optical coherence tomography. A number of laser-based therapeutic approaches are reviewed, including photodynamic therapy, fluorescence guided resection and photothermal therapy. Fundamental principles and instrumentation are discussed for each imaging and therapeutic technique. Represents the first publication dedicated solely to optical diagnostics and therapeutics in the brain Provides a comprehensive review of the principles of each imaging/therapeutic modality Reviews the latest advances in instrumentation for optical diagnostics in the brain Discusses new optical-based therapeutic approaches for brain diseases

  8. Nonlinear optical imaging: toward chemical imaging during neurosurgery

    Science.gov (United States)

    Meyer, Tobias; Dietzek, Benjamin; Krafft, Christoph; Romeike, Bernd F. M.; Reichart, Rupert; Kalff, Rolf; Popp, Jürgen

    2011-03-01

    Tumor recognition and precise tumor margin detection presents a central challenge during neurosurgery. In this contribution we present our recent all-optical approach to tackle this problem. We introduce various nonlinear optical techniques, such as coherent anti-Stokes Raman scattering (CARS), second-harmonic generation (SHG) and two-photon fluorescence (TPEF), to study the morphology and chemical composition of (ex vivo) brain tissue. As the experimental techniques presented are contact-free all-optical techniques, which do not rely on the administration of external (fluorescence) labels, we anticipate that their implementation into surgical microscopes will provide significant advantages of intraoperative tumor diagnosis. In this contribution an introduction to the different optical spectroscopic methods will be presented and their implementation into a multimodal microscopic setup will be discussed. Furthermore, we will exemplify their application to brain tissue, i.e. both pig brain as a model for healthy brain tissue and human brain samples taken from surgical procedures. The data to be discussed show the capability of a joint CARS/SHG/TPEF multimodal imaging approach in highlighting various aspects of tissue morphochemistry. The consequences of this microspectroscopic potential, when combined with the existing technology of surgical microscopes, will be discussed.

  9. Signal and Image Processing of Optical Coherence Tomography at 1310 nm Wavelength for Non Biological Samples

    Directory of Open Access Journals (Sweden)

    Yogesh Rao

    2015-04-01

    Full Text Available OCT is a recently developed optical interferometric technique for non-invasive diagnostic medical imaging in vivo; the most sensitive optical imaging modality.OCT finds its application in ophthalmology, blood flow estimation and cancer diagnosis along with many non biomedical applications. The main advantage of OCT is its high resolution which is in µm range and depth of penetration in mm range. Unlike other techniques like X rays and CT scan, OCT does not comprise any x ray source and therefore no radiations are involved. This research work discusses the basics of spectral domain OCT (SD-OCT, experimental setup, data acquisition and signal processing involved in OCT systems. Simulation of OCT involving modelling and signal processing, carried out on Lab VIEW platform has been discussed. Using the experimental setup, some of the non biomedical samples have been scanned. The signal processing and image processing of the scanned data was carried out in MATLAB and Lab VIEW, some of the results thus obtained have been discussed in the end.

  10. Optical metabolic imaging for monitoring tracheal health

    Science.gov (United States)

    Sharick, Joe T.; Gil, Daniel A.; Choma, Michael A.; Skala, Melissa C.

    2016-04-01

    The health of the tracheal mucosa and submucosa is a vital yet poorly understood component of critical care medicine, and a minimally-invasive method is needed to monitor tracheal health in patients. Of particular interest are the ciliated cells of the tracheal epithelium that move mucus away from the lungs and prevent respiratory infection. Optical metabolic imaging (OMI) allows cellular-level measurement of metabolism, and is a compelling method for assessing tracheal health because ciliary motor proteins require ATP to function. In this pilot study, we apply multiphoton imaging of the fluorescence intensities and lifetimes of metabolic co-enzymes NAD(P)H and FAD to the mucosa and submucosa of ex vivo mouse trachea. We demonstrate the feasibility and potential diagnostic utility of these measurements for assessing tracheal health and pathophysiology at the single-cell level.

  11. Imaging of murine embryonic cardiovascular development using optical coherence tomography (Conference Presentation)

    Science.gov (United States)

    Huang, Yongyang; Degenhardt, Karl R.; Astrof, Sophie; Zhou, Chao

    2016-03-01

    We have demonstrated the capability of spectral domain optical coherence tomography (SDOCT) system to image full development of mouse embryonic cardiovascular system. Monitoring morphological changes of mouse embryonic heart occurred in different embryonic stages helps identify structural or functional cardiac anomalies and understand how these anomalies lead to congenital heart diseases (CHD) present at birth. In this study, mouse embryo hearts ranging from E9.5 to E15.5 were prepared and imaged in vitro. A customized spectral domain OCT system was used for imaging, with a central wavelength of 1310nm, spectral bandwidth of ~100nm and imaging speed of 47kHz A-scans/s. Axial resolution of this system was 8.3µm in air, and transverse resolution was 6.2 µm with 5X objective. Key features of mouse embryonic cardiovascular development such as vasculature remodeling into circulatory system, separation of atria and ventricles and emergence of valves could be clearly seen in three-dimensional OCT images. Optical clearing was applied to overcome the penetration limit of OCT system. With high resolution, fast imaging speed, 3D imaging capability, OCT proves to be a promising biomedical imaging modality for developmental biology studies, rivaling histology and micro-CT.

  12. A content-based image retrieval method for optical colonoscopy images based on image recognition techniques

    Science.gov (United States)

    Nosato, Hirokazu; Sakanashi, Hidenori; Takahashi, Eiichi; Murakawa, Masahiro

    2015-03-01

    This paper proposes a content-based image retrieval method for optical colonoscopy images that can find images similar to ones being diagnosed. Optical colonoscopy is a method of direct observation for colons and rectums to diagnose bowel diseases. It is the most common procedure for screening, surveillance and treatment. However, diagnostic accuracy for intractable inflammatory bowel diseases, such as ulcerative colitis (UC), is highly dependent on the experience and knowledge of the medical doctor, because there is considerable variety in the appearances of colonic mucosa within inflammations with UC. In order to solve this issue, this paper proposes a content-based image retrieval method based on image recognition techniques. The proposed retrieval method can find similar images from a database of images diagnosed as UC, and can potentially furnish the medical records associated with the retrieved images to assist the UC diagnosis. Within the proposed method, color histogram features and higher order local auto-correlation (HLAC) features are adopted to represent the color information and geometrical information of optical colonoscopy images, respectively. Moreover, considering various characteristics of UC colonoscopy images, such as vascular patterns and the roughness of the colonic mucosa, we also propose an image enhancement method to highlight the appearances of colonic mucosa in UC. In an experiment using 161 UC images from 32 patients, we demonstrate that our method improves the accuracy of retrieving similar UC images.

  13. State-of-the-art in retinal optical coherence tomography image analysis.

    Science.gov (United States)

    Baghaie, Ahmadreza; Yu, Zeyun; D'Souza, Roshan M

    2015-08-01

    Optical coherence tomography (OCT) is an emerging imaging modality that has been widely used in the field of biomedical imaging. In the recent past, it has found uses as a diagnostic tool in dermatology, cardiology, and ophthalmology. In this paper we focus on its applications in the field of ophthalmology and retinal imaging. OCT is able to non-invasively produce cross-sectional volumetric images of the tissues which can be used for analysis of tissue structure and properties. Due to the underlying physics, OCT images suffer from a granular pattern, called speckle noise, which restricts the process of interpretation. This requires specialized noise reduction techniques to eliminate the noise while preserving image details. Another major step in OCT image analysis involves the use of segmentation techniques for distinguishing between different structures, especially in retinal OCT volumes. The outcome of this step is usually thickness maps of different retinal layers which are very useful in study of normal/diseased subjects. Lastly, movements of the tissue under imaging as well as the progression of disease in the tissue affect the quality and the proper interpretation of the acquired images which require the use of different image registration techniques. This paper reviews various techniques that are currently used to process raw image data into a form that can be clearly interpreted by clinicians. PMID:26435924

  14. Refractive-index based tomosynthesis using dark-field imaging optics

    International Nuclear Information System (INIS)

    Tomosynthesis (TS) is a pseudo-3-dimensional image reconstruction method to recover depth-resolved information using restricted number of projections. In this research, refraction index based TS imaging using dark-field imaging (DFI) optics is proposed and biomedical soft tissues were imaged in low dose exposure. By a single exposure of an object, two projected images are obtained from a Laue-case analyzer of DFI. Calculating the both images refraction component is deduced, while two exposures are needed in DEI (diffraction enhanced imaging). Thus the measurement time and the radiation dose in DFI are half of DEI. In addition, the proposed reconstruction algorithm, derived from the quantitative relationship in measurement process, allows high contrast tomographic imaging in spite of one order smaller number of projections for CT (computed tomography). To demonstrate the proposed imaging protocol efficacy, an ex-vivo excised tissue of human lung were imaged using a system constructed at the vertical wiggler beamline at PF-BL14C at KEK. TS image is successfully delineated high quality soft tissue structures comparable to CT.

  15. Sensors for biomedical applications

    NARCIS (Netherlands)

    Bergveld, Piet

    1986-01-01

    This paper considers the impact during the last decade of modern IC technology, microelectronics, thin- and thick-film technology, fibre optic technology, etc. on the development of sensors for biomedical applications.

  16. A photonic crystal cavity-optical fiber tip nanoparticle sensor for biomedical applications

    CERN Document Server

    Shambat, Gary; Khurana, Aman; Provine, J; Sarmiento, Tomas; Cheng, Kai; Cheng, Zhen; Harris, James; Daldrup-Link, Heike; Gambhir, Sanjiv Sam; Vuckovic, Jelena

    2012-01-01

    We present a sensor capable of detecting solution-based nanoparticles using an optical fiber tip functionalized with a photonic crystal cavity. When sensor tips are retracted from a nanoparticle solution after being submerged, we find that a combination of convective fluid forces and optically-induced trapping cause an aggregation of nanoparticles to form directly on cavity surfaces. A simple readout of quantum dot photoluminescence coupled to the optical fiber shows that nanoparticle presence and concentration can be detected through modified cavity properties. Our sensor can detect both gold and iron oxide nanoparticles and can be utilized for molecular sensing applications in biomedicine.

  17. RESEARCH ON IMAGE TRANSLATION BETWEEN SAR AND OPTICAL IMAGERY

    OpenAIRE

    Fu; Zhang,

    2012-01-01

    Compare to optical sensors, Synthetic Aperture Radar (SAR) sensors can work at all time and under all weather conditions. However, SAR images are less intuitive and more difficult to understand. To complement advantages of optical and SAR sensors, a technique of image translation is put forward. Firstly, the concept named as remote sensing image translation is presented, and a set of technology thinking for multi-source remote sensing image translation is also given. Image understand...

  18. Synthesis of bifunctional Gd2O3:Eu3+nanocrystals and their applications in biomedical imaging

    Institute of Scientific and Technical Information of China (English)

    吴燕利; 徐贤柱; 李倩兰; 阳如春; 丁海新; 肖强

    2015-01-01

    Ultrafine Gd2O3:Eu3+nanocrystals were successfully prepared by a simple reverse microemulsion method and subsequent calcination. Their structural, optical and magnetic properties were investigated using scanning electron microscopy (SEM), transmis-sion electron microscopy (TEM), X-ray diffraction (XRD), Fourier transform infrared (FTIR), photoluminescence (PL), and magnetic property measurement system (MPMS). The amorphous Gd2(CO3)3:Eu3+colloidal spheres were proved as an intermediate product, and gradually transformed into crystallized Gd2O3:Eu3+with average diameter less than 100 nm. The paramagnetic property of the synthesized Gd2O3:Eu3+nanocrystals were confirmed with its linear hysteresis plot (M-H). And Gd2O3:Eu3+nanocrystals showed high contrast T1-enhancing modality due to the presence of the Gd3+ ions onto the particle surface. In addition, the application of the Gd2O3:Eu3+nanocrystals as biotag for cell labeling was reported, red fluorescence from Eu3+ions observed by fluorescence micros-copy showed that the nanocrystals could permeate the cell membrane. Cytotoxicity studies of the Gd2O3:Eu3+nanocrystals showed no adverse effect on cell viability, evidencing their high biological compatibility. Therefore, the nanoprobe formed from Gd2O3:Eu3+nanocrystals provided the dual modality of optical and magnetic resonance imaging.

  19. WebMedSA: a web-based framework for segmenting and annotating medical images using biomedical ontologies

    Science.gov (United States)

    Vega, Francisco; Pérez, Wilson; Tello, Andrés.; Saquicela, Victor; Espinoza, Mauricio; Solano-Quinde, Lizandro; Vidal, Maria-Esther; La Cruz, Alexandra

    2015-12-01

    Advances in medical imaging have fostered medical diagnosis based on digital images. Consequently, the number of studies by medical images diagnosis increases, thus, collaborative work and tele-radiology systems are required to effectively scale up to this diagnosis trend. We tackle the problem of the collaborative access of medical images, and present WebMedSA, a framework to manage large datasets of medical images. WebMedSA relies on a PACS and supports the ontological annotation, as well as segmentation and visualization of the images based on their semantic description. Ontological annotations can be performed directly on the volumetric image or at different image planes (e.g., axial, coronal, or sagittal); furthermore, annotations can be complemented after applying a segmentation technique. WebMedSA is based on three main steps: (1) RDF-ization process for extracting, anonymizing, and serializing metadata comprised in DICOM medical images into RDF/XML; (2) Integration of different biomedical ontologies (using L-MOM library), making this approach ontology independent; and (3) segmentation and visualization of annotated data which is further used to generate new annotations according to expert knowledge, and validation. Initial user evaluations suggest that WebMedSA facilitates the exchange of knowledge between radiologists, and provides the basis for collaborative work among them.

  20. Radial-firing optical fiber tip containing conical-shaped air-pocket for biomedical applications.

    Science.gov (United States)

    Lee, Seung Ho; Ryu, Yong-Tak; Son, Dong Hoon; Jeong, Seongmook; Kim, Youngwoong; Ju, Seongmin; Kim, Bok Hyeon; Han, Won-Taek

    2015-08-10

    We report a novel radial-firing optical fiber tip containing a conical-shaped air-pocket fabricated by deforming a hollow optical fiber using electric arc-discharge process. The hollow optical fiber was fusion spliced with a conventional optical fiber, simultaneously deforming into the intagliated conical-shaped region along the longitudinal fiber-axis of the fiber due to the gradual collapse of the cavity of the hollow optical fiber. Then the distal-end of the hollow optical fiber was sealed by the additional arc-discharge in order to obstruct the inflow of an external bio-substance or liquid to the inner air surface during the surgical operations, resulting in the formation of encased air-pocket in the silica glass fiber. Due to the total internal reflection of the laser beam at the conical-shaped air surface, the laser beam (λ = 632.8 nm) was deflected to the circumferential direction up to 87 degree with respect to the fiber-axis. PMID:26367974

  1. Listening to light scattering in turbid media: quantitative optical scattering imaging using photoacoustic measurements with one-wavelength illumination

    International Nuclear Information System (INIS)

    Biomedical photoacoustic tomography (PAT), as a potential imaging modality, can visualize tissue structure and function with high spatial resolution and excellent optical contrast. It is widely recognized that the ability of quantitatively imaging optical absorption and scattering coefficients from photoacoustic measurements is essential before PAT can become a powerful imaging modality. Existing quantitative PAT (qPAT), while successful, has been focused on recovering absorption coefficient only by assuming scattering coefficient a constant. An effective method for photoacoustically recovering optical scattering coefficient is presently not available. Here we propose and experimentally validate such a method for quantitative scattering coefficient imaging using photoacoustic data from one-wavelength illumination. The reconstruction method developed combines conventional PAT with the photon diffusion equation in a novel way to realize the recovery of scattering coefficient. We demonstrate the method using various objects having scattering contrast only or both absorption and scattering contrasts embedded in turbid media. The listening-to-light-scattering method described will be able to provide high resolution scattering imaging for various biomedical applications ranging from breast to brain imaging. (papers)

  2. Nanodiamonds as novel nanomaterials for biomedical applications: drug delivery and imaging systems

    Directory of Open Access Journals (Sweden)

    Kaur R

    2013-01-01

    Full Text Available Randeep Kaur, Ildiko BadeaDrug Design and Discovery Research Group, College of Pharmacy and Nutrition, University of Saskatchewan, Saskatoon, Saskatchewan, CanadaAbstract: Detonation nanodiamonds (NDs are emerging as delivery vehicles for small chemical drugs and macromolecular biotechnology products due to their primary particle size of 4 to 5 nm, stable inert core, reactive surface, and ability to form hydrogels. Nanoprobe technology capitalizes on the intrinsic fluorescence, high refractive index, and unique Raman signal of the NDs, rendering them attractive for in vitro and in vivo imaging applications. This review provides a brief introduction of the various types of NDs and describes the development of procedures that have led to stable single-digit-sized ND dispersions, a crucial feature for drug delivery systems and nanoprobes. Various approaches used for functionalizing the surface of NDs are highlighted, along with a discussion of their biocompatibility status. The utilization of NDs to provide sustained release and improve the dispersion of hydrophobic molecules, of which chemotherapeutic drugs are the most investigated, is described. The prospects of improving the intracellular delivery of nucleic acids by using NDs as a platform are exemplified. The photoluminescent and optical scattering properties of NDs, together with their applications in cellular labeling, are also reviewed. Considering the progress that has been made in understanding the properties of NDs, they can be envisioned as highly efficient drug delivery and imaging biomaterials for use in animals and humans.Keywords: dispersion, surface functionalization, toxicity, carriers, fluorescence, light scattering

  3. Applications of non-imaging micro-optic systems

    OpenAIRE

    Baker, Katherine Anne

    2012-01-01

    While imaging optics necessarily transmit a clear image of an object, non-imaging optics manipulate light in many different ways. Two important applications are illumination and concentration. In this thesis, I cover an application in each of these areas involving small-scale optics. Extremely low birth weight infants typically require intubation, but existing laryngoscopes for viewing the airway are not suited to this population. Small commercial cameras can fit within the required geometry,...

  4. Impact of non-stationary optical illumination on image reconstruction in optoacoustic tomography

    CERN Document Server

    Lou, Yang; Oraevsky, Alexander A; Anastasio, Mark A

    2016-01-01

    Optoacoustic tomography (OAT), also known as photoacoustic tomography, is a rapidly emerging hybrid imaging technique that possesses great potential for a wide range of biomedical imaging applications. In OAT, a laser is employed to illuminate the tissue of interest and acoustic signals are produced via the photoacoustic effect. From these data, an estimate of the distribution of the absorbed optical energy density within the tissue is reconstructed, referred to as the object function. This quantity is defined, in part, by the distribution of light fluence within the tissue that is established by the laser source. When performing three-dimensional imaging of large objects, such as a female human breast, it can be difficult to achieve a relatively uniform coverage of light fluence within the volume of interest when the position of the laser source is fixed. To circumvent this, researchers have proposed illumination schemes in which the relative position of the laser source and ultrasound probe is fixed, and bo...

  5. Deep and optically resolved imaging through scattering media by space-reversed propagation

    CERN Document Server

    Glastre, Wilfried; Hugon, Olivier; De Chatellus, Hugues Guillet; Lacot, Eric

    2012-01-01

    We propose a novel technique of microscopy to overcome the effects of both scattering and limitation of the accessible depth due to the objective working distance. By combining Laser Optical Feedback Imaging (LOFI) with Acoustic Photon Taging (APT) and Synthetic Aperture (SA) refocusing we demonstrate an ultimate shot noise sensitivity at low power (required to preserve the tissues) and a high resolution beyond the microscope working distance. More precisely, with a laser power of 10mW, we obtain images with a micrometric resolution over ~8 transport mean free paths, corresponding to 1.3 times the microscope working distance. Various applications such as biomedical diagnosis, research and development of new drugs and therapies can benefit from our imaging setup.

  6. Self-referenced, microdegree, optical rotation polarimeter for biomedical applications: an analysis

    Science.gov (United States)

    Weissman, Zeev; Goldberg, Doron

    2016-07-01

    We comprehensively analyze the performance of a type of optical rotation (OR) polarimeter, which has been designed from the outset to fit the special requirements of two major applications: general chiral detection during the separation of optical isomers by high-pressure liquid chromatography systems in the pharmaceutical industry, and monitoring of glucose in the interstitial fluid of diabetics by a fully implanted long-term optical sensor. Both very demanding applications call for an OR polarimeter that can be miniaturized while maintaining high resolution and accuracy in the microdegree range in the face of considerable noise from various sources. These two characteristics-miniature size and immunity to noise-set this polarimeter apart from the traditional OR polarimeters currently in use, which are both bulky and very susceptible to noise. The following detailed analysis demonstrates the advantages of this polarimeter and its potential as an analytic and diagnostic tool.

  7. Anterior Eye Imaging with Optical Coherence Tomography

    Science.gov (United States)

    Huang, David; Li, Yan; Tang, Maolong

    The development of corneal and anterior segment optical coherence tomography (OCT) technology has advanced rapidly in recently years. The scan geometry and imaging wavelength are both important choices to make in designing anterior segment OCT systems. Rectangular scan geometry offers the least image distortion and is now used in most anterior OCT systems. The wavelength of OCT light source affects resolution and penetration. An optimal choice of the OCT imaging wavelength (840, 1,050, or 1,310 nm) depends on the application of interest. Newer generation Fourier-domain OCT technology can provide scan speed 100-1000 times faster than the time-domain technology. Various commercial anterior OCT systems are available on the market. A wide spectrum of diagnostic and surgical applications using anterior segment OCT had been investigated, including mapping of corneal and epithelial thicknesses, keratoconus screening, measuring corneal refractive power, corneal surgery planning and evaluation in LASIK, intracorneal ring implantation, assessment of angle closure glaucoma, anterior chamber biometry and intraocular lens implants, intraocular lens power calculation, and eye bank donor cornea screening.

  8. Image restoration of the open-loop adaptive optics retinal imaging system based on optical transfer function analysis

    Science.gov (United States)

    Yu, Lei; Qi, Yue; Li, Dayu; Xia, Mingliang; Xuan, Li

    2013-07-01

    The residual aberrations of the adaptive optics retinal imaging system will decrease the quality of the retinal images. To overcome this obstacle, we found that the optical transfer function (OTF) of the adaptive optics retinal imaging system can be described as the Levy stable distribution. Then a new method is introduced to estimate the OTF of the open-loop adaptive optics system, based on analyzing the residual aberrations of the open-loop adaptive optics system in the residual aberrations measuring mode. At last, the estimated OTF is applied to restore the retinal images of the open-loop adaptive optics retinal imaging system. The contrast and resolution of the restored image is significantly improved with the Laplacian sum (LS) from 0.0785 to 0.1480 and gray mean grads (GMG) from 0.0165 to 0.0306.

  9. Design and Optimization of Dual Optical Fiber MEMS Pressure Sensor For Biomedical Applications

    Energy Technology Data Exchange (ETDEWEB)

    Dagang, Guo [Mechanical Engineering, National University Of Singapore, Singapore (Singapore); Po, Samuel Ng Choon [Mechanical Engineering, National University Of Singapore, Singapore (Singapore); Hock, Francis Tay Eng [Mechanical Engineering, National University Of Singapore, Singapore (Singapore); Rongming, Lin [School of Mechanical and Aerospace Engineering, Nanyang Technological University (Singapore)

    2006-04-01

    A novel Single Deeply Corrugated Diaphragm (SDCD) based dual optical fiber Fabry-Perot pressure sensor for blood pressure measurement is proposed. Both mechanical and optical simulations are performed to demonstrate the feasibility and superior performance of the proposed sensor. Result shows that less than 2% nonlinearity can be achieved for the proposed sensor using optimal Fabry-Perot microcavity. Also, the fabrication process of the proposed sensor is given, instead of complicated fusion bonding process, only bulk and surface micromachining techniques are required which facilitate the mass production of such biocompatible and disposable pressure sensors.

  10. Reconstruction of Optical Thickness from Hoffman Modulation Contrast Images

    DEFF Research Database (Denmark)

    Olsen, Niels Holm; Sporring, Jon; Nielsen, Mads;

    2003-01-01

    Hoffman microscopy imaging systems are part of numerous fertility clinics world-wide. We discuss the physics of the Hoffman imaging system from optical thickness to image intensity, implement a simple, yet fast, reconstruction algorithm using Fast Fourier Transformation and discuss the usability...... of the method on a number of cells from a human embryo. Novelty is identifying the non-linearity of a typical Hoffman imaging system, and the application of Fourier Transformation to reconstruct the optical thickness....

  11. Numerical modelling and image reconstruction in diffuse optical tomography

    OpenAIRE

    Dehghani, Hamid; Srinivasan, Subhadra; Pogue, Brian W.; Gibson, Adam

    2009-01-01

    The development of diffuse optical tomography as a functional imaging modality has relied largely on the use of model-based image reconstruction. The recovery of optical parameters from boundary measurements of light propagation within tissue is inherently a difficult one, because the problem is nonlinear, ill-posed and ill-conditioned. Additionally, although the measured near-infrared signals of light transmission through tissue provide high imaging contrast, the reconstructed images suffer ...

  12. Can preoperative MR imaging predict optic nerve invasion of retinoblastoma?

    Energy Technology Data Exchange (ETDEWEB)

    Song, Kyoung Doo, E-mail: kdsong0308@gmail.com [Department of Radiology and Center for Imaging Science, Samsung Medical Center, Sungkyunkwan University School of Medicine, 50, Ilwon-Dong, Kangnam-Ku, Seoul 135-710 (Korea, Republic of); Eo, Hong, E-mail: rtombow@gmail.com [Department of Radiology and Center for Imaging Science, Samsung Medical Center, Sungkyunkwan University School of Medicine, 50, Ilwon-Dong, Kangnam-Ku, Seoul 135-710 (Korea, Republic of); Kim, Ji Hye, E-mail: jhkate.kim@samsung.com [Department of Radiology and Center for Imaging Science, Samsung Medical Center, Sungkyunkwan University School of Medicine, 50, Ilwon-Dong, Kangnam-Ku, Seoul 135-710 (Korea, Republic of); Yoo, So-Young, E-mail: sy1131.yoo@samsung.com [Department of Radiology and Center for Imaging Science, Samsung Medical Center, Sungkyunkwan University School of Medicine, 50, Ilwon-Dong, Kangnam-Ku, Seoul 135-710 (Korea, Republic of); Jeon, Tae Yeon, E-mail: hathor97.jeon@samsung.com [Department of Radiology and Center for Imaging Science, Samsung Medical Center, Sungkyunkwan University School of Medicine, 50, Ilwon-Dong, Kangnam-Ku, Seoul 135-710 (Korea, Republic of)

    2012-12-15

    Purpose: To evaluate the accuracy of pre-operative MRI for the detection of optic nerve invasion in retinoblastoma. Materials and methods: Institutional review board approval and informed consent were waived for this retrospective study. A total of 41 patients were included. Inclusion criteria were histologically proven retinoblastoma, availability of diagnostic-quality preoperative MR images acquired during the 4 weeks before surgery, unilateral retinoblastoma, and normal-sized optic nerve. Two radiologists retrospectively reviewed the MR images independently. Five imaging findings (diffuse mild optic nerve enhancement, focal strong optic nerve enhancement, optic sheath enhancement, tumor location, and tumor size) were evaluated against optic nerve invasion of retinoblastoma. The predictive performance of all MR imaging findings for optic nerve invasion was also evaluated by the receiver operating characteristic curve analysis. Results: Optic nerve invasion was histopathologically confirmed in 24% of study population (10/41). The differences in diffuse mild enhancement, focal strong enhancement, optic sheath enhancement, and tumor location between patients with optic nerve invasion and patients without optic nerve invasion were not significant. Tumor sizes were 16.1 mm (SD: 2.2 mm) and 14.9 mm (SD: 3.6 mm) in patients with and without optic nerve involvement, respectively (P = 0.444). P-Values from binary logistic regression indicated that all five imaging findings were not significant predictors of tumor invasion of optic nerve. The AUC values of all MR imaging findings for the prediction of optic nerve invasion were 0.689 (95% confidence interval: 0.499–0.879) and 0.653 (95% confidence interval: 0.445–0.861) for observer 1 and observer 2, respectively. Conclusion: Findings of MRI in patients with normal-sized optic nerves have limited usefulness in preoperatively predicting the presence of optic nerve invasion in retinoblastoma.

  13. Advances in the Simultaneous Multiple Surface optical design method for imaging and non-imaging applications

    OpenAIRE

    Wang, Lin

    2012-01-01

    Classical imaging optics has been developed over centuries in many areas, such as its paraxial imaging theory and practical design methods like multi-parametric optimization techniques. Although these imaging optical design methods can provide elegant solutions to many traditional optical problems, there are more and more new design problems, like solar concentrator, illumination system, ultra-compact camera, etc., that require maximum energy transfer efficiency, or ultra-compact optical stru...

  14. Phase-retrieved optical projection tomography for 3D imaging through scattering layers

    Science.gov (United States)

    Ancora, Daniele; Di Battista, Diego; Giasafaki, Georgia; Psycharakis, Stylianos; Liapis, Evangelos; Zacharopoulos, Athanasios; Zacharakis, Giannis

    2016-03-01

    Recently great progress has been made in biological and biomedical imaging by combining non-invasive optical methods, novel adaptive light manipulation and computational techniques for intensity-based phase recovery and three dimensional image reconstruction. In particular and in relation to the work presented here, Optical Projection Tomography (OPT) is a well-established technique for imaging mostly transparent absorbing biological models such as C. Elegans and Danio Rerio. On the contrary, scattering layers like the cocoon surrounding the Drosophila during the pupae stage constitutes a challenge for three dimensional imaging through such a complex structure. However, recent studies enabled image reconstruction through scattering curtains up to few transport mean free paths via phase retrieval iterative algorithms allowing to uncover objects hidden behind complex layers. By combining these two techniques we explore the possibility to perform a three dimensional image reconstruction of fluorescent objects embedded between scattering layers without compromising its structural integrity. Dynamical cross correlation registration was implemented for the registration process due to translational and flipping ambiguity of the phase retrieval problem, in order to provide the correct aligned set of data to perform the back-projection reconstruction. We have thus managed to reconstruct a hidden complex object between static scattering curtains and compared with the effective reconstruction to fully understand the process before the in-vivo biological implementation.

  15. Novel spirometry based on optical surface imaging

    Energy Technology Data Exchange (ETDEWEB)

    Li, Guang, E-mail: lig2@mskcc.org; Huang, Hailiang; Li, Diana G.; Chen, Qing; Gaebler, Carl P.; Mechalakos, James [Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, New York 10065 (United States); Wei, Jie [Department of Computer Science, City College of New York, New York, New York 10031 (United States); Sullivan, James [Pulmonary Laboratories, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York 10065 (United States); Zatcky, Joan; Rimner, Andreas [Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, New York 10065 (United States)

    2015-04-15

    Purpose: To evaluate the feasibility of using optical surface imaging (OSI) to measure the dynamic tidal volume (TV) of the human torso during free breathing. Methods: We performed experiments to measure volume or volume change in geometric and deformable phantoms as well as human subjects using OSI. To assess the accuracy of OSI in volume determination, we performed experiments using five geometric phantoms and two deformable body phantoms and compared the values with those derived from geometric calculations and computed tomography (CT) measurements, respectively. To apply this technique to human subjects, an institutional review board protocol was established and three healthy volunteers were studied. In the human experiment, a high-speed image capture mode of OSI was applied to acquire torso images at 4–5 frames per second, which was synchronized with conventional spirometric measurements at 5 Hz. An in-house MATLAB program was developed to interactively define the volume of interest (VOI), separate the thorax and abdomen, and automatically calculate the thoracic and abdominal volumes within the VOIs. The torso volume change (TV C = ΔV{sub torso} = ΔV{sub thorax} + ΔV{sub abdomen}) was automatically calculated using full-exhalation phase as the reference. The volumetric breathing pattern (BP{sub v} = ΔV{sub thorax}/ΔV{sub torso}) quantifying thoracic and abdominal volume variations was also calculated. Under quiet breathing, TVC should equal the tidal volume measured concurrently by a spirometer with a conversion factor (1.08) accounting for internal and external differences of temperature and moisture. Another MATLAB program was implemented to control the conventional spirometer that was used as the standard. Results: The volumes measured from the OSI imaging of geometric phantoms agreed with the calculated volumes with a discrepancy of 0.0% ± 1.6% (range −1.9% to 2.5%). In measurements from the deformable torso/thorax phantoms, the volume

  16. Novel spirometry based on optical surface imaging

    International Nuclear Information System (INIS)

    Purpose: To evaluate the feasibility of using optical surface imaging (OSI) to measure the dynamic tidal volume (TV) of the human torso during free breathing. Methods: We performed experiments to measure volume or volume change in geometric and deformable phantoms as well as human subjects using OSI. To assess the accuracy of OSI in volume determination, we performed experiments using five geometric phantoms and two deformable body phantoms and compared the values with those derived from geometric calculations and computed tomography (CT) measurements, respectively. To apply this technique to human subjects, an institutional review board protocol was established and three healthy volunteers were studied. In the human experiment, a high-speed image capture mode of OSI was applied to acquire torso images at 4–5 frames per second, which was synchronized with conventional spirometric measurements at 5 Hz. An in-house MATLAB program was developed to interactively define the volume of interest (VOI), separate the thorax and abdomen, and automatically calculate the thoracic and abdominal volumes within the VOIs. The torso volume change (TV C = ΔVtorso = ΔVthorax + ΔVabdomen) was automatically calculated using full-exhalation phase as the reference. The volumetric breathing pattern (BPv = ΔVthorax/ΔVtorso) quantifying thoracic and abdominal volume variations was also calculated. Under quiet breathing, TVC should equal the tidal volume measured concurrently by a spirometer with a conversion factor (1.08) accounting for internal and external differences of temperature and moisture. Another MATLAB program was implemented to control the conventional spirometer that was used as the standard. Results: The volumes measured from the OSI imaging of geometric phantoms agreed with the calculated volumes with a discrepancy of 0.0% ± 1.6% (range −1.9% to 2.5%). In measurements from the deformable torso/thorax phantoms, the volume differences measured using OSI imaging and CT

  17. Nanodiamond-Based Composite Structures for Biomedical Imaging and Drug Delivery.

    Science.gov (United States)

    Rosenholm, Jessica M; Vlasov, Igor I; Burikov, Sergey A; Dolenko, Tatiana A; Shenderova, Olga A

    2015-02-01

    Nanodiamond particles are widely recognized candidates for biomedical applications due to their excellent biocompatibility, bright photoluminescence based on color centers and outstanding photostability. Recently, more complex architectures with a nanodiamond core and an external shell or nanostructure which provides synergistic benefits have been developed, and their feasibility for biomedical applications has been demonstrated. This review is aimed at summarizing recent achievements in the fabrication and functional demonstrations of nanodiamond-based composite structures, along with critical considerations that should be taken into account in the design of such structures from a biomedical point of view. A particular focus of the review is core/shell structures of nanodiamond surrounded by porous silica shells, which demonstrate a remarkable increase in drug loading efficiency; as well as nanodiamonds decorated with carbon dots, which have excellent potential as bioimaging probes. Other combinations are also considered, relying on the discussed inherent properties of the inorganic materials being integrated in a way to advance inorganic nanomedicine in the quest for better health-related nanotechnology. PMID:26353602

  18. Physiochemical, Optical and Biological Activity of Chitosan-Chromone Derivative for Biomedical Applications

    OpenAIRE

    Joonseok Koh; Santosh Kumar

    2012-01-01

    This paper describes the physiochemical, optical and biological activity of chitosan-chromone derivative. The chitosan-chromone derivative gels were prepared by reacting chitosan with chromone-3-carbaldehyde, followed by solvent exchange, filtration and drying by evaporation. The identity of Schiff base was confirmed by UV-Vis absorption spectroscopy and Fourier-transform infrared (FTIR) spectroscopy. The chitosan-chromone derivative was evaluated by X-ray diffraction (XRD), thermogravimetric...

  19. Skin and cutaneous melanocytic lesion simulation in biomedical optics with multilayered phantoms.

    Science.gov (United States)

    Urso, P; Lualdi, M; Colombo, A; Carrara, M; Tomatis, S; Marchesini, R

    2007-05-21

    The complex inner layered structure of skin influences the photon diffusion inside the cutaneous tissues and determines the reflectance spectra formation. Phantoms are very useful tools to understand the biophysical meaning of parameters involved in light propagation through the skin. To simulate the skin reflectance spectrum, we realized a multilayered skin-like phantom and a multilayered skin phantom with a melanoma-like phantom embedded inside. Materials used were Al(2)O(3) particles, melanin of sepia officinalis and a calibrator for haematology systems dispersed in transparent silicon. Components were optically characterized with indirect techniques. Reflectance phantom spectra were compared with average values of in vivo spectra acquired on a sample of 573 voluntary subjects and 132 pigmented lesions. The phantoms' reflectance spectra agreed with those measured in vivo, mimicking the optical behaviour of the human skin. Further, the phantoms were optically stable and easily manageable, and represented a valid resource in spectra formation comprehension, in diagnostic laser applications and simulation model implementation, such as the Monte Carlo code for non-homogeneous media. PMID:17473339

  20. Skin and cutaneous melanocytic lesion simulation in biomedical optics with multilayered phantoms

    Energy Technology Data Exchange (ETDEWEB)

    Urso, P [Department of Occupational and Environmental Health, Hospital L. Sacco Unit, University of Milan, Via G B Grassi, 74-20157 Milan (Italy); Lualdi, M [Medical Physics Unit, Istituto Nazionale per lo Studio e la Cura dei Tumori, Via Venezian 1-20133 Milan (Italy); Colombo, A [Medical Physics Unit, Istituto Nazionale per lo Studio e la Cura dei Tumori, Via Venezian 1-20133 Milan (Italy); Carrara, M [Medical Physics Unit, Istituto Nazionale per lo Studio e la Cura dei Tumori, Via Venezian 1-20133 Milan (Italy); Tomatis, S [Medical Physics Unit, Istituto Nazionale per lo Studio e la Cura dei Tumori, Via Venezian 1-20133 Milan (Italy); Marchesini, R [Medical Physics Unit, Istituto Nazionale per lo Studio e la Cura dei Tumori, Via Venezian 1-20133 Milan (Italy)

    2007-05-21

    The complex inner layered structure of skin influences the photon diffusion inside the cutaneous tissues and determines the reflectance spectra formation. Phantoms are very useful tools to understand the biophysical meaning of parameters involved in light propagation through the skin. To simulate the skin reflectance spectrum, we realized a multilayered skin-like phantom and a multilayered skin phantom with a melanoma-like phantom embedded inside. Materials used were Al{sub 2}O{sub 3} particles, melanin of sepia officinalis and a calibrator for haematology systems dispersed in transparent silicon. Components were optically characterized with indirect techniques. Reflectance phantom spectra were compared with average values of in vivo spectra acquired on a sample of 573 voluntary subjects and 132 pigmented lesions. The phantoms' reflectance spectra agreed with those measured in vivo, mimicking the optical behaviour of the human skin. Further, the phantoms were optically stable and easily manageable, and represented a valid resource in spectra formation comprehension, in diagnostic laser applications and simulation model implementation, such as the Monte Carlo code for non-homogeneous media. (note)

  1. Multi-scale volumetric cell and tissue imaging based on optical projection tomography (Conference Presentation)

    Science.gov (United States)

    Ban, Sungbea; Cho, Nam Hyun; Ryu, Yongjae; Jung, Sunwoo; Vavilin, Andrey; Min, Eunjung; Jung, Woonggyu

    2016-04-01

    Optical projection tomography is a new optical imaging method for visualizing small biological specimens in three dimension. The most important advantage of OPT is to fill the gap between MRI and confocal microscope for the specimen having the range of 1-10 mm. Thus, it has been mainly used for whole-mount small animals and developmental study since this imaging modality was developed. The ability of OPT delivering anatomical and functional information of relatively large tissue in 3D has made it a promising platform in biomedical research. Recently, the potential of OPT spans its coverage to cellular scale. Even though there are increasing demand to obtain better understanding of cellular dynamics, only few studies to visualize cellular structure, shape, size and functional morphology over tissue has been investigated in existing OPT system due to its limited field of view. In this study, we develop a novel optical imaging system for 3D cellular imaging with OPT integrated with dynamic focusing technique. Our tomographic setup has great potential to be used for identifying cell characteristic in tissue because it can provide selective contrast on dynamic focal plane allowing for fluorescence as well as absorption. While the dominant contrast of optical imaging technique is to use the fluorescence for detecting certain target only, the newly developed OPT system will offer considerable advantages over currently available method when imaging cellar molecular dynamics by permitting contrast variation. By achieving multi-contrast, it is expected for this new imaging system to play an important role in delivering better cytological information to pathologist.

  2. Wavefront sensorless adaptive optics optical coherence tomography for in vivo retinal imaging in mice

    OpenAIRE

    Jian, Yifan; Xu, Jing; Gradowski, Martin A.; Bonora, Stefano; Zawadzki, Robert J.; Sarunic, Marinko V.

    2014-01-01

    We present wavefront sensorless adaptive optics (WSAO) Fourier domain optical coherence tomography (FD-OCT) for in vivo small animal retinal imaging. WSAO is attractive especially for mouse retinal imaging because it simplifies optical design and eliminates the need for wavefront sensing, which is difficult in the small animal eye. GPU accelerated processing of the OCT data permitted real-time extraction of image quality metrics (intensity) for arbitrarily selected retinal layers to be optimi...

  3. Scintillating optical fibers in detection of X synchrotron radiation images

    International Nuclear Information System (INIS)

    It is pointed out how the use of optical fiber matrices (or alluminated optical guides) of scintillating glass can constitute systems of X image detection with energy higher than 2 KeV, with high efficiency, high spatial resolution and an acquisition capability dependent on the X flux, in the formation of the single images

  4. Analytical model and optical design of distributed aperture optical system for millimeter-wave imaging

    Science.gov (United States)

    Chen, Caihua; Schuetz, Christopher A.; Martin, Richard D.; Samluk, Jesse; Stein, E. Lee, Jr.; MacKrides, Daniel G.; Mirotznik, Mark; Prather, Dennis W.

    2008-10-01

    Millimeter-wave imaging is very interesting due to its unique transmission properties through a broad range of atmospheric obscurants such as cloud, dust, fog, sandstorms, and smoke, which thereby enables all-weather passive imaging. Unfortunately, the usefulness of millimeter-wave imagers is often limited by the large aperture sizes required to obtain images of sufficient resolution, as governed by the diffraction limit. To this end, we previously proposed a distributed aperture system for direct non-scan millimeter-wave imaging using an optical upconversion technique. In this proposed approach, an antenna array is employed to sample image signals in the millimeter-wave domain. The sampled millimeter-wave signals are then upconverted to the optical domain using electro-optic modulation techniques. These optical signals are mapped into a similar array on the entrance pupil of the following optical system for direct imaging. Although distributed aperture imaging is not new in both radio astronomy and conventional optical inteferometric imaging, the proposed approach is different in that it physically samples image in the millimeter-wave domain and directly forms the image in the optical domain. Therefore, specific analysis and evaluation techniques are required for the design and optimization of the proposed system. In this paper, we will address these issues, develop techniques to evaluate and enhance the system imaging performance and present methods to optimize the geometric configuration.

  5. Novel optical scanning cryptography using Fresnel telescope imaging.

    Science.gov (United States)

    Yan, Aimin; Sun, Jianfeng; Hu, Zhijuan; Zhang, Jingtao; Liu, Liren

    2015-07-13

    We propose a new method called modified optical scanning cryptography using Fresnel telescope imaging technique for encryption and decryption of remote objects. An image or object can be optically encrypted on the fly by Fresnel telescope scanning system together with an encryption key. For image decryption, the encrypted signals are received and processed with an optical coherent heterodyne detection system. The proposed method has strong performance through use of secure Fresnel telescope scanning with orthogonal polarized beams and efficient all-optical information processing. The validity of the proposed method is demonstrated by numerical simulations and experimental results.

  6. Optical authentication via photon-synthesized ghost imaging using optical nonlinear correlation

    Science.gov (United States)

    Chen, Wen; Chen, Xudong

    2015-10-01

    We present a method for optical authentication via photon-synthesized ghost imaging using optical nonlinear correlation. In ghost imaging, multiple series of photons recorded at the object beam arm can be arbitrarily controlled for the generation of synthesized objects. Ghost imaging with sparse reference intensity patterns provides a channel to effectively modulate the noise-like synthesized objects during the recovery, and the reconstructed (noise-like) objects, i.e., added or subtracted information, can be further authenticated by optical nonlinear correlation algorithm. It is expected that the proposed method can provide an effective and promising alternative for ghost-imaging-based optical processing.

  7. Document Indexing for Image-Based Optical Information Systems.

    Science.gov (United States)

    Thiel, Thomas J.; And Others

    1991-01-01

    Discussion of image-based information retrieval systems focuses on indexing. Highlights include computerized information retrieval; multimedia optical systems; optical mass storage and personal computers; and a case study that describes an optical disk system which was developed to preserve, access, and disseminate military documents. (19…

  8. Understanding the optics to aid microscopy image segmentation.

    Science.gov (United States)

    Yin, Zhaozheng; Li, Kang; Kanade, Takeo; Chen, Mei

    2010-01-01

    Image segmentation is essential for many automated microscopy image analysis systems. Rather than treating microscopy images as general natural images and rushing into the image processing warehouse for solutions, we propose to study a microscope's optical properties to model its image formation process first using phase contrast microscopy as an exemplar. It turns out that the phase contrast imaging system can be relatively well explained by a linear imaging model. Using this model, we formulate a quadratic optimization function with sparseness and smoothness regularizations to restore the "authentic" phase contrast images that directly correspond to specimen's optical path length without phase contrast artifacts such as halo and shade-off. With artifacts removed, high quality segmentation can be achieved by simply thresholding the restored images. The imaging model and restoration method are quantitatively evaluated on two sequences with thousands of cells captured over several days. PMID:20879233

  9. Development of A Biomedical Imaging Informatics System for Diagnosis and Treatment Planning

    OpenAIRE

    Wang, Geoffrey; Wang, May D.

    2003-01-01

    The medical imaging technologies have been used for detecting tumors through the years. Tumors that can be viewed in imaging are usually big enough to contain billion tumor cells. Some patients may be cured if detected earlier and the surgery is performed well. Those lead to molecular imaging and image-guided surgery research activities, which post new challenges on large scale imaging data management and 3-D visualization. The goal of this project is to develop 3-D imaging informatics system...

  10. Hybrid Deconvolution of Adaptive Optics Retinal Images from Wavefront Sensing

    Institute of Scientific and Technical Information of China (English)

    TIAN Yu; RAO Chang-Hui; RAO Xue-Jun; WANG Cheng; YU Xiang; LIU Qian; XUE Li-Xia; LING Ning; JIANG Wen-Han

    2008-01-01

    Adaptive optics can be used to compensate for the wave aberration of the human eyes to achieve high-resolution imaging in real time.However the correction is partial due to the limitation of hardware.We propose a kind of hybrid image post-processing method.which uses the blind deconvolution combined with the residual data in wavefront sensor to restore the partially adaptive optics corrected retinal image.This method is applied in the image restoration of the vivid human retinal images.The results show that it is effective to improve the retinal image quality.

  11. Hybrid Deconvolution of Adaptive Optics Retinal Images from Wavefront Sensing

    International Nuclear Information System (INIS)

    Adaptive optics can be used to compensate for the wave aberration of the human eyes to achieve high-resolution imaging in real time. However the correction is partial due to the limitation of hardware. We propose a kind of hybrid image post-processing method, which uses the blind deconvolution combined with the residual data in wavefront sensor to restore the partially adaptive optics corrected retinal image. This method is applied in the image restoration of the vivid human retinal images. The results show that it is effective to improve the retinal image quality

  12. Handbook of 3D machine vision optical metrology and imaging

    CERN Document Server

    Zhang, Song

    2013-01-01

    With the ongoing release of 3D movies and the emergence of 3D TVs, 3D imaging technologies have penetrated our daily lives. Yet choosing from the numerous 3D vision methods available can be frustrating for scientists and engineers, especially without a comprehensive resource to consult. Filling this gap, Handbook of 3D Machine Vision: Optical Metrology and Imaging gives an extensive, in-depth look at the most popular 3D imaging techniques. It focuses on noninvasive, noncontact optical methods (optical metrology and imaging). The handbook begins with the well-studied method of stereo vision and

  13. Retrieving biomedical images through content-based learning from examples using fine granularity

    Science.gov (United States)

    Jiang, Hao; Xu, Songhua; Lau, Francis C. M.

    2012-02-01

    Traditional content-based image retrieval methods based on learning from examples analyze and attempt to understand high-level semantics of an image as a whole. They typically apply certain case-based reasoning technique to interpret and retrieve images through measuring the semantic similarity or relatedness between example images and search candidate images. The drawback of such a traditional content-based image retrieval paradigm is that the summation of imagery contents in an image tends to lead to tremendous variation from image to image. Hence, semantically related images may only exhibit a small pocket of common elements, if at all. Such variability in image visual composition poses great challenges to content-based image retrieval methods that operate at the granularity of entire images. In this study, we explore a new content-based image retrieval algorithm that mines visual patterns of finer granularities inside a whole image to identify visual instances which can more reliably and generically represent a given search concept. We performed preliminary experiments to validate our new idea for content-based image retrieval and obtained very encouraging results.

  14. Modern Trends in Imaging XI: Impedance Measurements in the Biomedical Sciences

    Directory of Open Access Journals (Sweden)

    Frederick D. Coffman

    2012-01-01

    Full Text Available Biological organisms and their component organs, tissues and cells have unique electrical impedance properties. Impedance properties often change with changes in structure, composition, and metabolism, and can be indicative of the onset and progression of disease states. Over the past 100 years, instruments and analytical methods have been developed to measure the impedance properties of biological specimens and to utilize these measurements in both clinical and basic science settings. This chapter will review the applications of impedance measurements in the biomedical sciences, from whole body analysis to impedance measurements of single cells and cell monolayers, and how cellular impedance measuring instruments can now be used in high throughput screening applications.

  15. Limitations to adaptive optics image quality in rodent eyes

    OpenAIRE

    Zhou, Xiaolin; Bedggood, Phillip; Metha, Andrew

    2012-01-01

    Adaptive optics (AO) retinal image quality of rodent eyes is inferior to that of human eyes, despite the promise of greater numerical aperture. This paradox challenges several assumptions commonly made in AO imaging, assumptions which may be invalidated by the very high power and dioptric thickness of the rodent retina. We used optical modeling to compare the performance of rat and human eyes under conditions that tested the validity of these assumptions. Results showed that AO image quality ...

  16. Advances in Optical Spectroscopy and Imaging of Breast Lesions

    Energy Technology Data Exchange (ETDEWEB)

    Demos, S; Vogel, A J; Gandjbakhche, A H

    2006-01-03

    A review is presented of recent advances in optical imaging and spectroscopy and the use of light for addressing breast cancer issues. Spectroscopic techniques offer the means to characterize tissue components and obtain functional information in real time. Three-dimensional optical imaging of the breast using various illumination and signal collection schemes in combination with image reconstruction algorithms may provide a new tool for cancer detection and monitoring of treatment.

  17. A game-based platform for crowd-sourcing biomedical image diagnosis and standardized remote training and education of diagnosticians

    Science.gov (United States)

    Feng, Steve; Woo, Minjae; Chandramouli, Krithika; Ozcan, Aydogan

    2015-03-01

    Over the past decade, crowd-sourcing complex image analysis tasks to a human crowd has emerged as an alternative to energy-inefficient and difficult-to-implement computational approaches. Following this trend, we have developed a mathematical framework for statistically combining human crowd-sourcing of biomedical image analysis and diagnosis through games. Using a web-based smart game (BioGames), we demonstrated this platform's effectiveness for telediagnosis of malaria from microscopic images of individual red blood cells (RBCs). After public release in early 2012 (http://biogames.ee.ucla.edu), more than 3000 gamers (experts and non-experts) used this BioGames platform to diagnose over 2800 distinct RBC images, marking them as positive (infected) or negative (non-infected). Furthermore, we asked expert diagnosticians to tag the same set of cells with labels of positive, negative, or questionable (insufficient information for a reliable diagnosis) and statistically combined their decisions to generate a gold standard malaria image library. Our framework utilized minimally trained gamers' diagnoses to generate a set of statistical labels with an accuracy that is within 98% of our gold standard image library, demonstrating the "wisdom of the crowd". Using the same image library, we have recently launched a web-based malaria training and educational game allowing diagnosticians to compare their performance with their peers. After diagnosing a set of ~500 cells per game, diagnosticians can compare their quantified scores against a leaderboard and view their misdiagnosed cells. Using this platform, we aim to expand our gold standard library with new RBC images and provide a quantified digital tool for measuring and improving diagnostician training globally.

  18. SPECIAL ASPECTS OF INITIAL OPTICAL SCHEME SELECTION FOR DESIGN OF NON-IMAGING OPTICAL SYSTEMS

    Directory of Open Access Journals (Sweden)

    R. V. Anitropov

    2016-01-01

    Full Text Available Subject of Research. The research results, structural composition analysis and the parametric synthesis of the projected imaging and non-imaging optical systems were presented. We made an attempt to use the gained experience about imaging systems while designing non-imaging systems, by adapting the composition theory for the calculations of non-imaging systems. Several patterns were revealed, which provide a deeper understanding of the design process of non-imaging optical systems; measures of its optimization were proposed. Method. We investigated the applicability of the theory of composition and synthesis of non-imaging optical systems. The main provisions of the theory of composition are based on the division of all available optical elements in four types depending on their functionality, which corresponds to a modular design. Similar items were identified in non-imaging optical systems and adaptation of composition theory to their design became possible. Main Results. General design patterns of imaging and non-imaging optical systems were studied. Classification of systems, components, as well as technical and generic characteristics of imaging and non-imaging optical systems was determined. Search mechanism of the initial optical system by means of structural and parametric synthesis of non-imaging optical system was formalized. The basic elements were determined included in non-imaging systems and their classification by functionality was done. They were subdivided into basic, corrective, wide angle and high aperture ones. The rules for formation of these elements and their composition were determined: surface reflecting, refracting, spherical and nonspherical elements with total internal reflection. The foundations of composition theory for non-imaging optical systems were laid. The approbation of this method was carried out on the example of the illumination system calculation for surgical room. A 3D model of an illumination optical

  19. Radiance and photon noise: imaging in geometrical optics, physical optics, quantum optics and radiology

    Science.gov (United States)

    Caucci, Luca; Myers, Kyle J.; Barrett, Harrison H.

    2016-01-01

    The statistics of detector outputs produced by an imaging system are derived from basic radiometric concepts and definitions. We show that a fundamental way of describing a photon-limited imaging system is in terms of a Poisson random process in spatial, angular, and wavelength variables. We begin the paper by recalling the concept of radiance in geometrical optics, radiology, physical optics, and quantum optics. The propagation and conservation laws for radiance in each of these domains are reviewed. Building upon these concepts, we distinguish four categories of imaging detectors that all respond in some way to the incident radiance, including the new category of photon-processing detectors (capable of measuring radiance on a photon-by-photon basis). This allows us to rigorously show how the concept of radiance is related to the statistical properties of detector outputs and to the information content of a single detected photon. A Monte-Carlo technique, which is derived from the Boltzmann transport equation, is presented as a way to estimate probability density functions to be used in reconstruction from photon-processing data.

  20. NeuroTerrain – a client-server system for browsing 3D biomedical image data sets

    Directory of Open Access Journals (Sweden)

    Nissanov Jonathan

    2007-02-01

    Full Text Available Abstract Background Three dimensional biomedical image sets are becoming ubiquitous, along with the canonical atlases providing the necessary spatial context for analysis. To make full use of these 3D image sets, one must be able to present views for 2D display, either surface renderings or 2D cross-sections through the data. Typical display software is limited to presentations along one of the three orthogonal anatomical axes (coronal, horizontal, or sagittal. However, data sets precisely oriented along the major axes are rare. To make fullest use of these datasets, one must reasonably match the atlas' orientation; this involves resampling the atlas in planes matched to the data set. Traditionally, this requires the atlas and browser reside on the user's desktop; unfortunately, in addition to being monolithic programs, these tools often require substantial local resources. In this article, we describe a network-capable, client-server framework to slice and visualize 3D atlases at off-axis angles, along with an open client architecture and development kit to support integration into complex data analysis environments. Results Here we describe the basic architecture of a client-server 3D visualization system, consisting of a thin Java client built on a development kit, and a computationally robust, high-performance server written in ANSI C++. The Java client components (NetOStat support arbitrary-angle viewing and run on readily available desktop computers running Mac OS X, Windows XP, or Linux as a downloadable Java Application. Using the NeuroTerrain Software Development Kit (NT-SDK, sophisticated atlas browsing can be added to any Java-compatible application requiring as little as 50 lines of Java glue code, thus making it eminently re-useable and much more accessible to programmers building more complex, biomedical data analysis tools. The NT-SDK separates the interactive GUI components from the server control and monitoring, so as to support

  1. Optical Processing of Speckle Images with Bacteriorhodopsin for Pattern Recognition

    Science.gov (United States)

    Downie, John D.; Tucker, Deanne (Technical Monitor)

    1994-01-01

    Logarithmic processing of images with multiplicative noise characteristics can be utilized to transform the image into one with an additive noise distribution. This simplifies subsequent image processing steps for applications such as image restoration or correlation for pattern recognition. One particularly common form of multiplicative noise is speckle, for which the logarithmic operation not only produces additive noise, but also makes it of constant variance (signal-independent). We examine the optical transmission properties of some bacteriorhodopsin films here and find them well suited to implement such a pointwise logarithmic transformation optically in a parallel fashion. We present experimental results of the optical conversion of speckle images into transformed images with additive, signal-independent noise statistics using the real-time photochromic properties of bacteriorhodopsin. We provide an example of improved correlation performance in terms of correlation peak signal-to-noise for such a transformed speckle image.

  2. Encoded diffractive optics for full-spectrum computational imaging.

    Science.gov (United States)

    Heide, Felix; Fu, Qiang; Peng, Yifan; Heidrich, Wolfgang

    2016-01-01

    Diffractive optical elements can be realized as ultra-thin plates that offer significantly reduced footprint and weight compared to refractive elements. However, such elements introduce severe chromatic aberrations and are not variable, unless used in combination with other elements in a larger, reconfigurable optical system. We introduce numerically optimized encoded phase masks in which different optical parameters such as focus or zoom can be accessed through changes in the mechanical alignment of a ultra-thin stack of two or more masks. Our encoded diffractive designs are combined with a new computational approach for self-calibrating imaging (blind deconvolution) that can restore high-quality images several orders of magnitude faster than the state of the art without pre-calibration of the optical system. This co-design of optics and computation enables tunable, full-spectrum imaging using thin diffractive optics. PMID:27633055

  3. Optical microscopic imaging based on VRML language

    Science.gov (United States)

    Zhang, Xuedian; Zhang, Zhenyi; Sun, Jun

    2009-11-01

    As so-called VRML (Virtual Reality Modeling Language), is a kind of language used to establish a model of the real world or a colorful world made by people. As in international standard, VRML is the main kind of program language based on the "www" net building, which is defined by ISO, the kind of MIME is x-world or x-VRML. The most important is that it has no relationship with the operating system. Otherwise, because of the birth of VRML 2.0, its ability of describing the dynamic condition gets better, and the interaction of the internet evolved too. The use of VRML will bring a revolutionary change of confocal microscope. For example, we could send different kinds of swatch in virtual 3D style to the net. On the other hand, scientists in different countries could use the same microscope in the same time to watch the same samples by the internet. The mode of sending original data in the model of text has many advantages, such as: the faster transporting, the fewer data, the more convenient updating and fewer errors. In the following words we shall discuss the basic elements of using VRML in the field of Optical Microscopic imaging.

  4. A simple multipurpose double-beam optical image analyzer

    CERN Document Server

    Popowicz, Adam

    2016-01-01

    In the paper we present a low cost optical device which splits the light in the focal plane into two separate optical paths and collimates it back into a single image plane, and where a selective information processing ca be carried out. The optical system is straightforward and easy implementable as it consists of only three lens and two mirrors. The system is dedicated for imaging in low-light-level conditions in which widely used optical devices, based on beam-splitters or dichroic mirrors, suffer from light loss. We expose examples of applications of our device, using a prototype model. The proposed optical system may be employed for: monitoring the objects located in different distances from observer (1), creating regions of different magnification within a single image plane (2), high dynamic range photometry (3), or imaging in two wavelength bands simultaneously (4).

  5. Computational imaging using lightweight diffractive-refractive optics

    KAUST Repository

    Peng, Yifan

    2015-11-23

    Diffractive optical elements (DOE) show great promise for imaging optics that are thinner and more lightweight than conventional refractive lenses while preserving their light efficiency. Unfortunately, severe spectral dispersion currently limits the use of DOEs in consumer-level lens design. In this article, we jointly design lightweight diffractive-refractive optics and post-processing algorithms to enable imaging under white light illumination. Using the Fresnel lens as a general platform, we show three phase-plate designs, including a super-thin stacked plate design, a diffractive-refractive-hybrid lens, and a phase coded-aperture lens. Combined with cross-channel deconvolution algorithm, both spherical and chromatic aberrations are corrected. Experimental results indicate that using our computational imaging approach, diffractive-refractive optics is an alternative candidate to build light efficient and thin optics for white light imaging.

  6. Computational imaging using lightweight diffractive-refractive optics.

    Science.gov (United States)

    Peng, Yifan; Fu, Qiang; Amata, Hadi; Su, Shuochen; Heide, Felix; Heidrich, Wolfgang

    2015-11-30

    Diffractive optical elements (DOE) show great promise for imaging optics that are thinner and more lightweight than conventional refractive lenses while preserving their light efficiency. Unfortunately, severe spectral dispersion currently limits the use of DOEs in consumer-level lens design. In this article, we jointly design lightweight diffractive-refractive optics and post-processing algorithms to enable imaging under white light illumination. Using the Fresnel lens as a general platform, we show three phase-plate designs, including a super-thin stacked plate design, a diffractive-refractive-hybrid lens, and a phase coded-aperture lens. Combined with cross-channel deconvolution algorithm, both spherical and chromatic aberrations are corrected. Experimental results indicate that using our computational imaging approach, diffractive-refractive optics is an alternative candidate to build light efficient and thin optics for white light imaging.

  7. A simple multipurpose double-beam optical image analyzer

    Science.gov (United States)

    Popowicz, A.; Blachowicz, T.

    2016-07-01

    In the paper we present a low cost optical device which splits the light in the focal plane into two separate optical paths and collimates it back into a single image plane, and where a selective information processing can be carried out. The optical system is straightforward and easily implementable as it consists of only three lenses and two mirrors. The system is dedicated for imaging in low-light-level conditions in which widely used optical devices, based on beam splitters or dichroic mirrors, suffer from light loss. We expose examples of applications of our device, using a prototype model. The proposed optical system may be employed for: monitoring the objects located at different distances from observer (1), creating regions of different magnification within a single image plane (2), high dynamic range photometry (3), or imaging in two wavelength bands simultaneously (4).

  8. Subdiffraction incoherent optical imaging via spatial-mode demultiplexing

    CERN Document Server

    Tsang, Mankei

    2016-01-01

    I propose a spatial-mode demultiplexing (SPADE) scheme for the far-field imaging of arbitrary incoherent optical sources. For an object too small to be resolved by direct imaging under the diffraction limit, I show that SPADE can estimate the moments of the source distribution much more precisely than direct imaging can fundamentally do under the effect of photon shot noise.

  9. Advances in Biomedical Imaging, Bioengineering, and Related Technologies for the Development of Biomarkers of Pancreatic Disease: Summary of a National Institute of Diabetes and Digestive and Kidney Diseases and National Institute of Biomedical Imaging and Bioengineering Workshop.

    Science.gov (United States)

    Kelly, Kimberly A; Hollingsworth, Michael A; Brand, Randall E; Liu, Christina H; Singh, Vikesh K; Srivastava, Sudhir; Wasan, Ajay D; Yadav, Dhiraj; Andersen, Dana K

    2015-11-01

    A workshop sponsored by the National Institute of Diabetes and Digestive and Kidney Diseases and the National Institute of Biomedical Imaging and Bioengineering focused on research gaps and opportunities in the development of new biomarkers of pancreatic disease. The session was held on July 22, 2015, and structured into 6 sessions: 1) Introduction and Overview; 2) Keynote Address; 3) New Approaches to the Diagnosis of Chronic Pancreatitis; 4) Biomarkers of Pain and Inflammation; 5) New Approaches to the Detection of Pancreatic Cancer; and 6) Shed Exosomes, Shed Cells, and Shed Proteins. Recent advances in the fields of pancreatic imaging, functional markers of pancreatic disease, proteomics, molecular and cellular imaging, and detection of circulating cancer cells and exosomes were reviewed. Knowledge gaps and research needs were highlighted. The development of new methods for the noninvasive determination of pancreatic pathology; the use of cellular markers of pancreatic function, inflammation, pain, and malignancy; and the refinement of methods to identify cells and cellular constituents of pancreatic cancer were discussed. The further refinement of sophisticated technical methods and the need for clinical studies to validate these new approaches in large-scale studies of patients at risk for the development of pancreatic disease were repeatedly emphasized. PMID:26465948

  10. Optical-digital hybrid image search system in cloud environment

    Science.gov (United States)

    Ikeda, Kanami; Kodate, Kashiko; Watanabe, Eriko

    2016-09-01

    To improve the versatility and usability of optical correlators, we developed an optical-digital hybrid image search system consisting of digital servers and an optical correlator that can be used to perform image searches in the cloud environment via a web browser. This hybrid system employs a simple method to obtain correlation signals and has a distributed network design. The correlation signals are acquired by using an encoder timing signal generated by a rotating disk, and the distributed network design facilitates the replacement and combination of the digital correlation server and the optical correlator.

  11. Dynamic differential imaging of intrinsic optical responses in the retina

    Science.gov (United States)

    Yao, Xin-Cheng; Li, Yang-Guo; Liu, Lei; Amthor, Frank

    2010-02-01

    High resolution monitoring of stimulus-evoked retinal neural activities is important for understanding retinal neural mechanisms, and for diagnosis of retinal disease and evaluation of treatment. Fast intrinsic optical signals (IOSs), which have the time courses comparable to retinal electrophysiological responses, hold the promise for high resolution imaging of retinal neural activities. However, application of fast IOS imaging has been hindered by contamination of slow, high magnitude, optical responses associated with transient hemodynamic and metabolic changes. We recently demonstrated the feasibility of separating fast IOSs from slow optical responses by combined dynamic differential imaging and high frequency flicker stimulation.

  12. Reconstruction of color biomedical images by means of quaternion generic Jacobi-Fourier moments in the framework of polar pixels.

    Science.gov (United States)

    Camacho-Bello, César; Padilla-Vivanco, Alfonso; Toxqui-Quitl, Carina; Báez-Rojas, José Javier

    2016-01-01

    A detailed analysis of the quaternion generic Jacobi-Fourier moments (QGJFMs) for color image description is presented. In order to reach numerical stability, a recursive approach is used during the computation of the generic Jacobi radial polynomials. Moreover, a search criterion is performed to establish the best values for the parameters [Formula: see text] and [Formula: see text] of the radial Jacobi polynomial families. Additionally, a polar pixel approach is taken into account to increase the numerical accuracy in the calculation of the QGJFMs. To prove the mathematical theory, some color images from optical microscopy and human retina are used. Experiments and results about color image reconstruction are presented. PMID:27014716

  13. Digital adaptive optics line-scanning confocal imaging system

    Science.gov (United States)

    Liu, Changgeng; Kim, Myung K.

    2015-11-01

    A digital adaptive optics line-scanning confocal imaging (DAOLCI) system is proposed by applying digital holographic adaptive optics to a digital form of line-scanning confocal imaging system. In DAOLCI, each line scan is recorded by a digital hologram, which allows access to the complex optical field from one slice of the sample through digital holography. This complex optical field contains both the information of one slice of the sample and the optical aberration of the system, thus allowing us to compensate for the effect of the optical aberration, which can be sensed by a complex guide star hologram. After numerical aberration compensation, the corrected optical fields of a sequence of line scans are stitched into the final corrected confocal image. In DAOLCI, a numerical slit is applied to realize the confocality at the sensor end. The width of this slit can be adjusted to control the image contrast and speckle noise for scattering samples. DAOLCI dispenses with the hardware pieces, such as Shack-Hartmann wavefront sensor and deformable mirror, and the closed-loop feedbacks adopted in the conventional adaptive optics confocal imaging system, thus reducing the optomechanical complexity and cost. Numerical simulations and proof-of-principle experiments are presented that demonstrate the feasibility of this idea.

  14. Optical color-image encryption and synthesis using coherent diffractive imaging in the Fresnel domain.

    Science.gov (United States)

    Chen, Wen; Chen, Xudong; Sheppard, Colin J R

    2012-02-13

    We propose a new method using coherent diffractive imaging for optical color-image encryption and synthesis in the Fresnel domain. An optical multiple-random-phase-mask encryption system is applied, and a strategy based on lateral translations of a phase-only mask is employed during image encryption. For the decryption, an iterative phase retrieval algorithm is applied to extract high-quality decrypted color images from diffraction intensity maps (i.e., ciphertexts). In addition, optical color-image synthesis is also investigated based on coherent diffractive imaging. Numerical results are presented to demonstrate feasibility and effectiveness of the proposed method. Compared with conventional interference methods, coherent diffractive imaging approach may open up a new research perspective or can provide an effective alternative for optical color-image encryption and synthesis.

  15. Optical molecular imaging for detection of Barrett's-associated neoplasia

    Institute of Scientific and Technical Information of China (English)

    Nadhi Thekkek; Sharmila Anandasabapathy; Rebecca Richards-Kortum

    2011-01-01

    Recent advancements in the endoscopic imaging of Barrett's esophagus can be used to probe a wide range of optical properties that are altered with neoplastic progression.This review summarizes relevant changes in optical properties as well as imaging approaches that measures those changes.Wide-field imaging approaches include narrow-band imaging that measures changes in light scattering and absorption,and autofluorescence imaging that measure changes in endogenous fluorophores.High-resolution imaging approaches include optical coherence tomography,endocytoscopy,confocal microendoscopy,and high-resolution microendoscopy.These technologies,some coupled with an appropriate contrast agent,can measure differences in glandular morphology,nuclear morphology,or vascular alterations associated with neoplasia.Advances in targeted contrast agents are further discussed.Studies that have explored these technologies are highlighted;as are the advantages and limitations of each.

  16. Image science and image-quality research in the Optical Sciences Center

    Science.gov (United States)

    Barrett, Harrison H.; Myers, Kyle J.

    2014-09-01

    This paper reviews the history of research into imaging and image quality at the Optical Sciences Center (OSC), with emphasis on the period 1970-1990. The work of various students in the areas of psychophysical studies of human observers of images; mathematical model observers; image simulation and analysis, and the application of these methods to radiology and nuclear medicine is summarized. The rapid progress in computational power, at OSC and elsewhere, which enabled the steady advances in imaging and the emergence of a science of imaging, is also traced. The implications of these advances to ongoing research and the current Image Science curriculum at the College of Optical Sciences are discussed.

  17. An adaptive optics imaging system designed for clinical use.

    Science.gov (United States)

    Zhang, Jie; Yang, Qiang; Saito, Kenichi; Nozato, Koji; Williams, David R; Rossi, Ethan A

    2015-06-01

    Here we demonstrate a new imaging system that addresses several major problems limiting the clinical utility of conventional adaptive optics scanning light ophthalmoscopy (AOSLO), including its small field of view (FOV), reliance on patient fixation for targeting imaging, and substantial post-processing time. We previously showed an efficient image based eye tracking method for real-time optical stabilization and image registration in AOSLO. However, in patients with poor fixation, eye motion causes the FOV to drift substantially, causing this approach to fail. We solve that problem here by tracking eye motion at multiple spatial scales simultaneously by optically and electronically integrating a wide FOV SLO (WFSLO) with an AOSLO. This multi-scale approach, implemented with fast tip/tilt mirrors, has a large stabilization range of ± 5.6°. Our method consists of three stages implemented in parallel: 1) coarse optical stabilization driven by a WFSLO image, 2) fine optical stabilization driven by an AOSLO image, and 3) sub-pixel digital registration of the AOSLO image. We evaluated system performance in normal eyes and diseased eyes with poor fixation. Residual image motion with incremental compensation after each stage was: 1) ~2-3 arc minutes, (arcmin) 2) ~0.5-0.8 arcmin and, 3) ~0.05-0.07 arcmin, for normal eyes. Performance in eyes with poor fixation was: 1) ~3-5 arcmin, 2) ~0.7-1.1 arcmin and 3) ~0.07-0.14 arcmin. We demonstrate that this system is capable of reducing image motion by a factor of ~400, on average. This new optical design provides additional benefits for clinical imaging, including a steering subsystem for AOSLO that can be guided by the WFSLO to target specific regions of interest such as retinal pathology and real-time averaging of registered images to eliminate image post-processing.

  18. A laboratory-based X-ray phase contrast imaging scanner with applications in biomedical and non-medical disciplines

    International Nuclear Information System (INIS)

    X-ray phase contrast imaging (XPCi) provides a much higher visibility of low-absorbing details than conventional, attenuation-based radiography. This is due to the fact that image contrast is determined by the unit decrement of the real part of the complex refractive index of an object rather than by its imaginary part (the absorption coefficient), which can be up to 1000 times larger for energies in the X-ray regime. This finds applications in many areas, including medicine, biology, material testing, and homeland security. Until lately, XPCi has been restricted to synchrotron facilities due to its demanding coherence requirements on the radiation source. However, edge illumination XPCi, first developed by one of the authors at the ELETTRA Synchrotron in Italy, substantially relaxes these requirements and therefore provides options to overcome this problem. Our group has built a prototype scanner that adapts the edge-illumination concept to standard laboratory conditions and extends it to large fields of view. This is based on X-ray sources and detectors available off the shelf, and its use has led to impressive results in mammography, cartilage imaging, testing of composite materials and security inspection. This article presents the method and the scanner prototype, and reviews its applications in selected biomedical and non-medical disciplines. (author)

  19. Quality assessment for spectral domain optical coherence tomography (OCT) images

    OpenAIRE

    LIU, SHUANG; Paranjape, Amit S.; Elmaanaoui, Badr; Dewelle, Jordan; Rylander, H. Grady; Markey, Mia K.; Milner, Thomas E.

    2009-01-01

    Retinal nerve fiber layer (RNFL) thickness, a measure of glaucoma progression, can be measured in images acquired by spectral domain optical coherence tomography (OCT). The accuracy of RNFL thickness estimation, however, is affected by the quality of the OCT images. In this paper, a new parameter, signal deviation (SD), which is based on the standard deviation of the intensities in OCT images, is introduced for objective assessment of OCT image quality. Two other objective assessment paramete...

  20. Sub-diffraction-Limit Imaging in Optical Hyperlens

    Institute of Scientific and Technical Information of China (English)

    HU Ji-Gang; WANG Pei; LU Yong-Hua; MING Hai; CHEN Chun-Chong; CHEN Jun-Xue

    2008-01-01

    @@ Sub-diffraction-limit imaging in the optical hyperlens based on cylindrical metamaterials is studied. Some param-eters of hyperlens, such as the dispersive relation and the divergence angle of imaging, are numerically analysed with the ray trajectory method and effective medium theory. The dependence of imaging properties on dielectric constant is discussed. As a result, a 0° divergence angle is obtained for the best imaging effect. This work will be helpful for the design, structure fabrication and resolution improvement of the optical hyperlens.

  1. Electro-Optic Imaging Fourier Transform Spectral Polarimeter Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Boulder Nonlinear Systems, Inc. (BNS) proposes to develop an Electro-Optic Imaging Fourier Transform Spectral Polarimeter (E-O IFTSP). The polarimetric system is...

  2. Single Molecule Imaging in Living Cell with Optical Method

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Significance, difficult, international developing actuality and our completed works for single molecules imaging in living cell with optical method are described respectively. Additionally we give out some suggestions for the technology development further.

  3. A General System for Automatic Biomedical Image Segmentation Using Intensity Neighborhoods

    Directory of Open Access Journals (Sweden)

    Cheng Chen

    2011-01-01

    Full Text Available Image segmentation is important with applications to several problems in biology and medicine. While extensively researched, generally, current segmentation methods perform adequately in the applications for which they were designed, but often require extensive modifications or calibrations before being used in a different application. We describe an approach that, with few modifications, can be used in a variety of image segmentation problems. The approach is based on a supervised learning strategy that utilizes intensity neighborhoods to assign each pixel in a test image its correct class based on training data. We describe methods for modeling rotations and variations in scales as well as a subset selection for training the classifiers. We show that the performance of our approach in tissue segmentation tasks in magnetic resonance and histopathology microscopy images, as well as nuclei segmentation from fluorescence microscopy images, is similar to or better than several algorithms specifically designed for each of these applications.

  4. Biomedical Imaging Modality Classification Using Combined Visual Features and Textual Terms

    Directory of Open Access Journals (Sweden)

    Xian-Hua Han

    2011-01-01

    extraction from medical images and fuses the different extracted visual features and textual feature for modality classification. To extract visual features from the images, we used histogram descriptor of edge, gray, or color intensity and block-based variation as global features and SIFT histogram as local feature. For textual feature of image representation, the binary histogram of some predefined vocabulary words from image captions is used. Then, we combine the different features using normalized kernel functions for SVM classification. Furthermore, for some easy misclassified modality pairs such as CT and MR or PET and NM modalities, a local classifier is used for distinguishing samples in the pair modality to improve performance. The proposed strategy is evaluated with the provided modality dataset by ImageCLEF 2010.

  5. Plenoptic microscope based on laser optical feedback imaging (LOFI)

    CERN Document Server

    Glastre, W; Jacquin, O; de Chatellus, H Guillet; Lacot, E

    2015-01-01

    We present an overview of the performances of a plenoptic microscope which combines the high sensitivity of a laser optical feedback imaging setup , the high resolution of optical synthetic aperture and a shot noise limited signal to noise ratio by using acoustic photon tagging. By using an adapted phase filtering, this microscope allows phase drift correction and numerical aberration compensation (defocusing, coma, astigmatism ...). This new kind of microscope seems to be well adapted to make deep imaging through scattering and heterogeneous media.

  6. Contrast-based sensorless adaptive optics for retinal imaging

    OpenAIRE

    Zhou, Xiaolin; Bedggood, Phillip; Bui, Bang; Nguyen, Christine T. O.; He, Zheng; Metha, Andrew

    2015-01-01

    Conventional adaptive optics ophthalmoscopes use wavefront sensing methods to characterize ocular aberrations for real-time correction. However, there are important situations in which the wavefront sensing step is susceptible to difficulties that affect the accuracy of the correction. To circumvent these, wavefront sensorless adaptive optics (or non-wavefront sensing AO; NS-AO) imaging has recently been developed and has been applied to point-scanning based retinal imaging modalities. In thi...

  7. Nonlinear optical imaging and Raman microspectrometry of the cell nucleus throughout the cell cycle.

    Science.gov (United States)

    Pliss, Artem; Kuzmin, Andrey N; Kachynski, Aliaksandr V; Prasad, Paras N

    2010-11-17

    Fundamental understanding of cellular processes at molecular level is of considerable importance in cell biology as well as in biomedical disciplines for early diagnosis of infection and cancer diseases, and for developing new molecular medicine-based therapies. Modern biophotonics offers exclusive capabilities to obtain information on molecular composition, organization, and dynamics in a cell by utilizing a combination of optical spectroscopy and optical imaging. We introduce here a combination of Raman microspectrometry, together with coherent anti-Stokes Raman scattering (CARS) and two-photon excited fluorescence (TPEF) nonlinear optical microscopy, to study macromolecular organization of the nucleus throughout the cell cycle. Site-specific concentrations of proteins, DNA, RNA, and lipids were determined in nucleoli, nucleoplasmic transcription sites, nuclear speckles, constitutive heterochromatin domains, mitotic chromosomes, and extrachromosomal regions of mitotic cells by quantitative confocal Raman microspectrometry. A surprising finding, obtained in our study, is that the local concentration of proteins does not increase during DNA compaction. We also demonstrate that postmitotic DNA decondensation is a gradual process, continuing for several hours. The quantitative Raman spectroscopic analysis was corroborated with CARS/TPEF multimodal imaging to visualize the distribution of protein, DNA, RNA, and lipid macromolecules throughout the cell cycle.

  8. Peptide-Based Optical uPAR Imaging for Surgery

    DEFF Research Database (Denmark)

    Juhl, Karina; Christensen, Anders; Persson, Morten;

    2016-01-01

    Near infrared intra-operative optical imaging is an emerging technique with clear implications for improved cancer surgery by enabling a more distinct delineation of the tumor margins during resection. This modality has the potential to increase the number of patients having a curative radical......-operative optical guidance in cancer surgery to ensure complete removal of tumors while preserving adjacent, healthy tissue....

  9. Simulation of Optical and Synthetic Imaging using Microwave Reflectometry

    International Nuclear Information System (INIS)

    Two-dimensional full-wave time-dependent simulations in full plasma geometry are presented which show that conventional reflectometry (without a lens) can be used to synthetically image density fluctuations in fusion plasmas under conditions where the parallel correlation length greatly exceeds the poloidal correlation length of the turbulence. The advantage of synthetic imaging is that the image can be produced without the need for a large lens of high optical quality, and each frequency that is launched can be independently imaged. A particularly simple arrangement, consisting of a single receiver located at the midpoint of a microwave beam propagating along the plasma midplane is shown to suffice for imaging purposes. However, as the ratio of the parallel to poloidal correlation length decreases, a poloidal array of receivers needs to be used to synthesize the image with high accuracy. Simulations using DIII-D relevant parameters show the similarity of synthetic and optical imaging in present-day experiments

  10. Computer Aided Interpretation Approach for Optical Tomographic Images

    CERN Document Server

    Klose, Christian D; Netz, Uwe; Beuthan, Juergen; Hielscher, Andreas H

    2010-01-01

    A computer-aided interpretation approach is proposed to detect rheumatic arthritis (RA) of human finger joints in optical tomographic images. The image interpretation method employs a multi-variate signal detection analysis aided by a machine learning classification algorithm, called Self-Organizing Mapping (SOM). Unlike in previous studies, this allows for combining multiple physical image parameters, such as minimum and maximum values of the absorption coefficient for identifying affected and not affected joints. Classification performances obtained by the proposed method were evaluated in terms of sensitivity, specificity, Youden index, and mutual information. Different methods (i.e., clinical diagnostics, ultrasound imaging, magnet resonance imaging and inspection of optical tomographic images), were used as "ground truth"-benchmarks to determine the performance of image interpretations. Using data from 100 finger joints, findings suggest that some parameter combinations lead to higher sensitivities while...

  11. Simulation of Optical and Synthetic Imaging using Microwave Reflectometry

    Energy Technology Data Exchange (ETDEWEB)

    G.J. Kramer; R. Nazikian; E. Valeo

    2004-01-16

    Two-dimensional full-wave time-dependent simulations in full plasma geometry are presented which show that conventional reflectometry (without a lens) can be used to synthetically image density fluctuations in fusion plasmas under conditions where the parallel correlation length greatly exceeds the poloidal correlation length of the turbulence. The advantage of synthetic imaging is that the image can be produced without the need for a large lens of high optical quality, and each frequency that is launched can be independently imaged. A particularly simple arrangement, consisting of a single receiver located at the midpoint of a microwave beam propagating along the plasma midplane is shown to suffice for imaging purposes. However, as the ratio of the parallel to poloidal correlation length decreases, a poloidal array of receivers needs to be used to synthesize the image with high accuracy. Simulations using DIII-D relevant parameters show the similarity of synthetic and optical imaging in present-day experiments.

  12. Hemodynamic responses to functional activation accessed by optical imaging

    Science.gov (United States)

    Ni, Songlin; Li, Pengcheng; Yang, Yuanyuan; Lv, Xiaohua; Luo, Qingming

    2006-01-01

    A multi-wavelength light-emitting diode (LED) and laser diode (LD) based optical imaging system was developed to visualize the changes in cerebral blood flow, oxygenation following functional activation simultaneously in rodent cortex. The 2-D blood flow image was accessed by laser speckle contrast imaging, and the spectroscopic imaging of intrinsic signal was used for the calculation of oxyhemoglobin (HbO), deoxyhemoglobin (Hb) and total hemoglobin (HbT) concentration. The combination of spectroscopic imaging and laser speckle contrast imaging provides the capability to simultaneously investigate the spatial and temporal blood flow and hemoglobin concentration changes with high resolution, which may lead to a better understanding of the coupling between neuronal activation and vascular responses. The optical imaging system been built is compact and convenient to investigators. And it is reliable to acquire raw data. In present study, the hemodynamic responses to cortical spreading depression (CSD) in parietal cortex of ~-chloralose/urethan anesthetized rats were demonstrated.

  13. Design of photoelectronic optical image sensors

    Science.gov (United States)

    Johnson, C. B.

    1973-01-01

    The main performance goals for the image sensors are given and the design criteria for accomplishing these goals are discussed. Each functional element of the image sensors is described along with the various tradeoffs considered.

  14. A method to estimate optical distortion using planetary images

    Science.gov (United States)

    Kouyama, Toru; Yamazaki, Atsushi; Yamada, Manabu; Imamura, Takeshi

    2013-09-01

    We developed a method to calibrate optical distortion parameters for axisymmetrical optical systems using images of a spherical target taken at a variety of distances. The method utilizes the fact that the influence of distortion on the apparent radius in the image changes with the disk size of the projected body. Because several planets can be used as the spherical target, this method enables us to obtain distortion parameters in space and by using a large number of planetary images, desired accuracy of parameters can be achieved statistically. The applicability of the method was tested by applying it to simulated planetary images and real Venus images taken by Venus Monitoring Camera onboard the ESA's Venus Express, and optical distortion was successfully retrieved with the pixel position error of less than 1 pixel. Venus is the planet most suitable for the proposed method because of its smooth, nearly spherical surface of the haze layer covering the planet.

  15. Optical analysis of miniature lenses with curved imaging surfaces.

    Science.gov (United States)

    Reshidko, Dmitry; Sasian, Jose

    2015-10-01

    Miniature cameras for consumer electronics and mobile phones have been, and continue to be, in fast development. The system level requirements, such as manufacturing cost, packaging, and sensor characteristics, impose unique challenges for optical designers. In this paper, we discuss the potential optical benefits of having a curved image surface rather than a flat one. We show that curved sensor technology allows for optically faster lens solutions. We discuss trade-offs of several relevant characteristics, such as packaging, chief ray angle, image quality, and tolerance sensitivity. A comparison of a benchmark flat field lens, and an evaluation design imaging on a curved surface and working at f/1.6, provides useful specific insights. For a given image quality, departing from a flat imaging surface does not allow significantly reducing the total length of a lens. PMID:26479656

  16. Optical Synchrotron Radiation Beam Imaging with a Digital Mask

    Energy Technology Data Exchange (ETDEWEB)

    Fiorito, R. B. [University of Maryland, College Park, MD (United States); Zhang, H. D. [University of Maryland, College Park, MD (United States); Corbett, W. J. [SLAC, Menlo Park, CA (United States); Fisher, A. S. [SLAC, Menlo Park, CA (United States); Mok, W. Y. [SLAC, Menlo Park, CA (United States); Tian, K. [SLAC, Menlo Park, CA (United States); Douglas, D. [Thomas Jefferson National Accelerator Facility, Newport News, VA (United States); Wilson, F. G. [Thomas Jefferson National Accelerator Facility, Newport News, VA (United States); Zhang, S. [Thomas Jefferson National Accelerator Facility, Newport News, VA (United States); Mitsuhashi, T. M. [KEK, Tsukuba (Japan); Shkvarunets, A. G. [University of Maryland, College Park, MD (United States)

    2012-11-01

    We have applied a new imaging/optical masking technique, which employs a digital micro-mirror device (DMD) and optical synchrotron radiation (OSR), to perform high dynamic range (DR) beam imaging at the JLAB Energy Recovery Linac and the SLAC/SPEAR3 Synchrotron Light Source. The OSR from the beam is first focused onto the DMD to produce a primary image; selected areas of this image are spatially filtered by controlling the state of individual micro-mirrors; and finally, the filtered image is refocused onto a CCD camera. At JLAB this technique has been used successfully to view the beam halo with a DR ~ 105. At SPEAR3 the DMD was used to filter out the bright core of the stored beam to study the turn-by-turn dynamics of the 10-3 weaker injected beam. We describe the optical performance, present limitations and our plans to improve the DR of both experimental systems.

  17. Combined X-ray CT and mass spectrometry for biomedical imaging applications

    International Nuclear Information System (INIS)

    Imaging technologies play a key role in many branches of science, especially in biology and medicine. They provide an invaluable insight into both internal structure and processes within a broad range of samples. There are many techniques that allow one to obtain images of an object. Different techniques are based on the analysis of a particular sample property by means of a dedicated imaging system, and as such, each imaging modality provides the researcher with different information. The use of multimodal imaging (imaging with several different techniques) can provide additional and complementary information that is not possible when employing a single imaging technique alone. In this study, we present for the first time a multi-modal imaging technique where X-ray computerized tomography (CT) is combined with mass spectrometry imaging (MSI). While X-ray CT provides 3-dimensional information regarding the internal structure of the sample based on X-ray absorption coefficients, MSI of thin sections acquired from the same sample allows the spatial distribution of many elements/molecules, each distinguished by its unique mass-to-charge ratio (m/z), to be determined within a single measurement and with a spatial resolution as low as 1 μm or even less. The aim of the work is to demonstrate how molecular information from MSI can be spatially correlated with 3D structural information acquired from X-ray CT. In these experiments, frozen samples are imaged in an X-ray CT setup using Medipix based detectors equipped with a CO2 cooled sample holder. Single projections are pre-processed before tomographic reconstruction using a signal-to-thickness calibration. In the second step, the object is sliced into thin sections (circa 20 μm) that are then imaged using both matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) and secondary ion (SIMS) mass spectrometry, where the spatial distribution of specific molecules within the sample is determined. The

  18. Accuracy requirements of optical linear algebra processors in adaptive optics imaging systems.

    Science.gov (United States)

    Downie, J D; Goodman, J W

    1989-10-15

    A ground-based adaptive optics imaging telescope system attempts to improve image quality by measuring and correcting for atmospherically induced wavefront aberrations. The necessary control computations during each cycle will take a finite amount of time, which adds to the residual error variance since the atmosphere continues to change during that time. Thus an optical processor may be well-suited for this task. This paper investigates this possibility by studying the accuracy requirements in a general optical processor that will make it competitive with, or superior to, a conventional digital computer for adaptive optics use.

  19. New variational image decomposition model for simultaneously denoising and segmenting optical coherence tomography images

    Science.gov (United States)

    Duan, Jinming; Tench, Christopher; Gottlob, Irene; Proudlock, Frank; Bai, Li

    2015-11-01

    Optical coherence tomography (OCT) imaging plays an important role in clinical diagnosis and monitoring of diseases of the human retina. Automated analysis of optical coherence tomography images is a challenging task as the images are inherently noisy. In this paper, a novel variational image decomposition model is proposed to decompose an OCT image into three components: the first component is the original image but with the noise completely removed; the second contains the set of edges representing the retinal layer boundaries present in the image; and the third is an image of noise, or in image decomposition terms, the texture, or oscillatory patterns of the original image. In addition, a fast Fourier transform based split Bregman algorithm is developed to improve computational efficiency of solving the proposed model. Extensive experiments are conducted on both synthesised and real OCT images to demonstrate that the proposed model outperforms the state-of-the-art speckle noise reduction methods and leads to accurate retinal layer segmentation.

  20. A Novel Light Source Design for Spectral Tuning in Biomedical Imaging

    CERN Document Server

    Basu, Chandrajit; Meinhardt-Wollweber, Merve; Roth, Bernhard

    2014-01-01

    We propose a novel architecture with a remote phosphor based modular and compact light source in a non-contact dermoscope prototype for skin cancer screening. The spectrum and color temperature of the output light can easily and significantly be changed depending on spectral absorption characteristics of the tissues being imaged. The new system has several advantages compared to state-of-the-art phosphor converted ultra-bright white LEDs, used in a wide range of medical imaging devices, which have a fixed spectrum and color temperature at a given operating point. In particular, the system can more easily be adapted to the requirements originating from different tissues in the human body which have wavelength dependent absorption and reflectivity. This leads to improved contrast for different kinds of imaged tissue components. The concept of such a lighting architecture can be vastly utilized in many other medical imaging devices including endoscopic systems.

  1. Advances in biomedical imaging using THz technology with applications to burn-wound assessment

    Science.gov (United States)

    Tewari, Priyamvada; Kealey, Colin; Sung, Jun; Maccabi, Ashkan; Bajwa, Neha; Singh, Rahul; Culjat, Martin; Stojadinovic, Alexander; Grundfest, Warren; Taylor, Zachary D.

    2012-02-01

    Terahertz (THz) hydration sensing and image has been a topic of increased interest recently due largely to improvements in source and detector technology and the identification of applications where current hydration sensing techniques are insufficient. THz medical imaging is an expanding field of research and tissue hydration plays a key role in the contrast observed in THz tissue reflectance and absorbance maps. This paper outlines the most recent results in burn and corneal imaging where hydration maps were used to assess tissue status. A 3 day study was carried out in rat models where a THz imaging system was used to assess the severity and extent of burn throughout the first day of injury and at the 24, 48, and 72 hour time points. Marked difference in tissue reflectance were observed between the partial and full thickness burns and image features were identified that may be used as diagnostic markers for burn severity. Companion histological analysis performed on tissue excised on Day 3 confirms hypothesized burn severity. The results of these preliminary animal trials suggest that THz imaging may be useful in burn wound assessment where current clinical modalities have resolution and/or sensitivity insufficient for accurate diagnostics.

  2. A game-based crowdsourcing platform for rapidly training middle and high school students to perform biomedical image analysis

    Science.gov (United States)

    Feng, Steve; Woo, Min-jae; Kim, Hannah; Kim, Eunso; Ki, Sojung; Shao, Lei; Ozcan, Aydogan

    2016-03-01

    We developed an easy-to-use and widely accessible crowd-sourcing tool for rapidly training humans to perform biomedical image diagnostic tasks and demonstrated this platform's ability on middle and high school students in South Korea to diagnose malaria infected red-blood-cells (RBCs) using Giemsa-stained thin blood smears imaged under light microscopes. We previously used the same platform (i.e., BioGames) to crowd-source diagnostics of individual RBC images, marking them as malaria positive (infected), negative (uninfected), or questionable (insufficient information for a reliable diagnosis). Using a custom-developed statistical framework, we combined the diagnoses from both expert diagnosticians and the minimally trained human crowd to generate a gold standard library of malaria-infection labels for RBCs. Using this library of labels, we developed a web-based training and educational toolset that provides a quantified score for diagnosticians/users to compare their performance against their peers and view misdiagnosed cells. We have since demonstrated the ability of this platform to quickly train humans without prior training to reach high diagnostic accuracy as compared to expert diagnosticians. Our initial trial group of 55 middle and high school students has collectively played more than 170 hours, each demonstrating significant improvements after only 3 hours of training games, with diagnostic scores that match expert diagnosticians'. Next, through a national-scale educational outreach program in South Korea we recruited >1660 students who demonstrated a similar performance level after 5 hours of training. We plan to further demonstrate this tool's effectiveness for other diagnostic tasks involving image labeling and aim to provide an easily-accessible and quickly adaptable framework for online training of new diagnosticians.

  3. Magneto-optical system for high speed real time imaging

    Science.gov (United States)

    Baziljevich, M.; Barness, D.; Sinvani, M.; Perel, E.; Shaulov, A.; Yeshurun, Y.

    2012-08-01

    A new magneto-optical system has been developed to expand the range of high speed real time magneto-optical imaging. A special source for the external magnetic field has also been designed, using a pump solenoid to rapidly excite the field coil. Together with careful modifications of the cryostat, to reduce eddy currents, ramping rates reaching 3000 T/s have been achieved. Using a powerful laser as the light source, a custom designed optical assembly, and a high speed digital camera, real time imaging rates up to 30 000 frames per seconds have been demonstrated.

  4. Ghost imaging for three-dimensional optical security

    International Nuclear Information System (INIS)

    Ghost imaging has become increasingly popular in quantum and optical application fields. Here, we report three-dimensional (3D) optical security using ghost imaging. The series of random phase-only masks are sparsified, which are further converted into particle-like distributions placed in 3D space. We show that either an optical or digital approach can be employed for the encoding. The results illustrate that a larger key space can be generated due to the application of 3D space compared with previous works

  5. Review on Matching Infrared Face Images to Optical Face Images using LBP

    Directory of Open Access Journals (Sweden)

    Kamakhaya Argulewar

    2014-12-01

    Full Text Available In biometric research and many security areas, it is very difficult task to match the images which is captured by different devices. Large gap exist between them because they relates with different classes. Matching optical face images to infrared face images is one of the difficult task in face biometric. Large difference exists between infrared and optical face images because they belong to multiple classes. Converting the samples of multimodality into common feature space is the main objective of this project. Different class of images is relating by coordinating separate feature for classes .It is mainly used in heterogeneous face recognition. The new method has been developing for identification of heterogeneous face identification. Training set contains the images from different modalities. Initially the infrared image is preprocessed by applying Gaussian filter, difference of Gaussian and CSDN filters are apply on infrared face image. After preprocessing next step to extracting the feature by using LBP(local binary pattern feature extraction then relevance machine classifier is used to identify the best matching optical image from the corresponding infrared images from the optical images dataset. By processing this technique our system efficiently match the infrared and optical face images.

  6. A General Epipolar-Line Model between Optical and SAR Images and Used in Image Matching

    Directory of Open Access Journals (Sweden)

    Shuai Xing

    2014-02-01

    Full Text Available The search space and strategy are important for optical and SAR image matching. In this paper a general epipolar-line model has been proposed between linear array push-broom optical and SAR images. Then a dynamic approximate epipolar-line constraint model (DAELCM has been constructed and used to construct a new image matching algorithm with Harris operator and CRA. Experimental results have shown that the general epipolar-line model is valid and successfully used in optical and SAR image matching, and effectively limits the search space and decreased computation.

  7. The image registration of multi-band images by geometrical optics

    Science.gov (United States)

    Yan, Yung-Jhe; Chiang, Hou-Chi; Tsai, Yu-Hsiang; Huang, Ting-Wei; Mang, Ou-Yang

    2015-09-01

    The image fusion is combination of two or more images into one image. The fusion of multi-band spectral images has been in many applications, such as thermal system, remote sensing, medical treatment, etc. Images are taken with the different imaging sensors. If the sensors take images through the different optical paths in the same time, it will be in the different positions. The task of the image registration will be more difficult. Because the images are in the different field of views (F.O.V.), the different resolutions and the different view angles. It is important to build the relationship of the viewpoints in one image to the other image. In this paper, we focus on the problem of image registration for two non-pinhole sensors. The affine transformation between the 2-D image and the 3-D real world can be derived from the geometrical optics of the sensors. In the other word, the geometrical affine transformation function of two images are derived from the intrinsic and extrinsic parameters of two sensors. According to the affine transformation function, the overlap of the F.O.V. in two images can be calculated and resample two images in the same resolution. Finally, we construct the image registration model by the mapping function. It merges images for different imaging sensors. And, imaging sensors absorb different wavebands of electromagnetic spectrum at the different position in the same time.

  8. Optical image encryption based on multifractional Fourier transforms.

    Science.gov (United States)

    Zhu, B; Liu, S; Ran, Q

    2000-08-15

    We propose a new image encryption algorithm based on a generalized fractional Fourier transform, to which we refer as a multifractional Fourier transform. We encrypt the input image simply by performing the multifractional Fourier transform with two keys. Numerical simulation results are given to verify the algorithm, and an optical implementation setup is also suggested. PMID:18066153

  9. MICADO : The E-ELT adaptive optics imaging camera

    NARCIS (Netherlands)

    Davies, Richard; Ageorges, N.; Barl, L.; Bedin, L. R.; Bender, R.; Bernardi, P.; Chapron, F.; Clenet, Y.; Deep, A.; Deul, E.; Drost, M.; Eisenhauer, F.; Falomo, R.; Fiorentino, G.; Förster Schreiber, N. M.; Gendron, E.; Genzel, R.; Gratadour, D.; Greggio, L.; Grupp, F.; Held, E.; Herbst, T.; Hess, H.-J.; Hubert, Z.; Jahnke, K.; Kuijken, K.; Lutz, D.; Magrin, D.; Muschielok, B.; Navarro, R.; Noyola, E.; Paumard, T.; Piotto, G.; Ragazzoni, R.; Renzini, A.; Rousset, G.; Rix, H.-W.; Saglia, R.; Tacconi, L.; Thiel, M.; Tolstoy, E.; Trippe, S.; Tromp, N.; Valentijn, E. A.; Verdoes Kleijn, G.; Wegner, M.; McLean, I.S.; Ramsay, S.K.; Takami, H.

    2010-01-01

    MICADO is the adaptive optics imaging camera for the E-ELT. It has been designed and optimised to be mounted to the LGS-MCAO system MAORY, and will provide diffraction limited imaging over a wide (~1 arcmin) field of view. For initial operations, it can also be used with its own simpler AO module th

  10. Compensating focusing for space hyper spectral imager's fore optical system

    Institute of Scientific and Technical Information of China (English)

    Yicha Zhang; Wei Liu

    2011-01-01

    @@ The performance of space hyper spectral imager is severely affected by turbulent orbit temperature. Turbulence results in a defocus in the fore optical system of the imager. To address this problem, a focusing system is added. A number of simulation methods are applied on the fore optical system to study the relationship between temperature and focusing. In addition, this process is conducted to obtain a practical reference for focusing while the imager is flying on orbit. The obtained correlation between focusing and temperature is proven effective based on ground imaging and simulation testing.%The performance of space hyper spectral imager is severely affected by turbulent orbit temperature. Turbulence results in a defocus in the fore optical system of the imager. To address this problem, a focusing system is added. A number of simulation methods are applied on the fore optical system to study the relationship between temperature and focusing. In addition, this process is conducted to obtain a practical reference for focusing while the imager is flying on orbit. The obtained correlation between focusing and temperature is proven effective based on ground imaging and simulation testing.

  11. Compact low-cost detection electronics for optical coherence imaging

    OpenAIRE

    Akcay, A. C.; Lee, K. S.; Furenlid, L.R.; Costa, M A; Rolland, J.P.

    2006-01-01

    A compact and low-cost detection electronics scheme for optical coherence imaging is demonstrated. The performance of the designed electronics is analyzed in comparison to a commercial lock-in amplifier of equal bandwidth. Images of a fresh-onion sample are presented for each detection configuration.

  12. Fast optical measurements and imaging of flow mixing

    DEFF Research Database (Denmark)

    Clausen, Sønnik; Fateev, Alexander; Nielsen, Karsten Lindorff;

    in combustion enhancement can be also obtained. The infrared camera was also used together with special endoscope optics for fast thermal imaging of a coal-straw flame in an industrial boiler. Obtained time-resolved infrared images provided useful information for the diagnostics of the flame and fuel...

  13. Nonlinear Interferometric Vibrational Imaging (NIVI) with Novel Optical Sources

    Science.gov (United States)

    Boppart, Stephen A.; King, Matthew D.; Liu, Yuan; Tu, Haohua; Gruebele, Martin

    Optical imaging is essential in medicine and in fundamental studies of biological systems. Although many existing imaging modalities can supply valuable information, not all are capable of label-free imaging with high-contrast and molecular specificity. The application of molecular or nanoparticle contrast agents may adversely influence the biological system under investigation. These substances also present ongoing concerns over toxicity or particle clearance, which must be properly addressed before their approval for in vivo human imaging. Hence there is an increasing appreciation for label-free imaging techniques. It is of primary importance to develop imaging techniques that can indiscriminately identify and quantify biochemical compositions to high degrees of sensitivity and specificity through only the intrinsic optical response of endogenous molecular species. The development and use of nonlinear interferometric vibrational imaging, which is based on the interferometric detection of optical signals from coherent anti-Stokes Raman scattering (CARS), along with novel optical sources, offers the potential for label-free molecular imaging.

  14. Comparison of no-prior and soft-prior regularization in biomedical microwave imaging

    Directory of Open Access Journals (Sweden)

    Amir H Golnabi

    2011-01-01

    Full Text Available Microwave imaging for medical applications is attractive because the range of dielectric properties of different soft tissues can be substantial. Breast cancer detection and monitoring of treatment response are areas where this technology could be important because of the contrast between normal and malignant tissue. Unfortunately, the technique is unable to achieve the high spatial resolution at depth in tissue which is available from other conventional modalities such as x-ray computed tomography (CT or magnetic resonance imaging (MRI. We have incorporated a soft-prior regularization strategy within our microwave reconstruction algorithm and compared it with the images obtained with traditional no-prior (Levenberg-Marquardt regularization. Initial simulation and phantom results show a significant improvement of the recovered electrical properties. Specifically, errors in the microwave property estimates were improved by as much as 95%. The effects of a false-inclusion region were also evaluated and the results show that a small residual property bias of 6% in permittivity and 15% in conductivity can occur that does not otherwise degrade the property recovery accuracy of inclusions that actually exist. The work sets the stage for integrating microwave imaging with MR for improved resolution and functional imaging of the breast in the future.

  15. Ultrasound-modulated optical tomography for thick tissue imaging

    Science.gov (United States)

    Wang, Lihong V.; Zhao, Xuemei; Jacques, Steven L.

    1995-12-01

    Continuous-wave ultrasonic modulation of scattered laser light has been used to image objects in tissue-simulating turbid media for the first time. We hypothesize that the ultrasound wave focused into the turbid media modulates the laser light passing through the ultrasonic focal spot. The modulated laser light collected by a photomultiplier tube reflects the local mechanical and optical properties in the focal zone. Buried objects in 5-cm thick tissue phantoms are located with millimeter resolution by scanning and detecting alterations of the ultrasound-modulated optical signal. Ultrasound-modulated optical tomography separates the conflict between signal and resolution in purely optical imaging of tissue and does not rely on ballistic or quasi-ballistic photons but on the abundant diffuse photons. The imaging resolution is determined by the focused ultrasonic wave. This technique has the potential to provide a noninvasive, nonionizing, inexpensive diagnostic tool for diseases such as breast cancer.

  16. Coherence-Gated Sensorless Adaptive Optics Multiphoton Retinal Imaging.

    Science.gov (United States)

    Cua, Michelle; Wahl, Daniel J; Zhao, Yuan; Lee, Sujin; Bonora, Stefano; Zawadzki, Robert J; Jian, Yifan; Sarunic, Marinko V

    2016-09-07

    Multiphoton microscopy enables imaging deep into scattering tissues. The efficient generation of non-linear optical effects is related to both the pulse duration (typically on the order of femtoseconds) and the size of the focused spot. Aberrations introduced by refractive index inhomogeneity in the sample distort the wavefront and enlarge the focal spot, which reduces the multiphoton signal. Traditional approaches to adaptive optics wavefront correction are not effective in thick or multi-layered scattering media. In this report, we present sensorless adaptive optics (SAO) using low-coherence interferometric detection of the excitation light for depth-resolved aberration correction of two-photon excited fluorescence (TPEF) in biological tissue. We demonstrate coherence-gated SAO TPEF using a transmissive multi-actuator adaptive lens for in vivo imaging in a mouse retina. This configuration has significant potential for reducing the laser power required for adaptive optics multiphoton imaging, and for facilitating integration with existing systems.

  17. Coherence-Gated Sensorless Adaptive Optics Multiphoton Retinal Imaging

    Science.gov (United States)

    Cua, Michelle; Wahl, Daniel J.; Zhao, Yuan; Lee, Sujin; Bonora, Stefano; Zawadzki, Robert J.; Jian, Yifan; Sarunic, Marinko V.

    2016-01-01

    Multiphoton microscopy enables imaging deep into scattering tissues. The efficient generation of non-linear optical effects is related to both the pulse duration (typically on the order of femtoseconds) and the size of the focused spot. Aberrations introduced by refractive index inhomogeneity in the sample distort the wavefront and enlarge the focal spot, which reduces the multiphoton signal. Traditional approaches to adaptive optics wavefront correction are not effective in thick or multi-layered scattering media. In this report, we present sensorless adaptive optics (SAO) using low-coherence interferometric detection of the excitation light for depth-resolved aberration correction of two-photon excited fluorescence (TPEF) in biological tissue. We demonstrate coherence-gated SAO TPEF using a transmissive multi-actuator adaptive lens for in vivo imaging in a mouse retina. This configuration has significant potential for reducing the laser power required for adaptive optics multiphoton imaging, and for facilitating integration with existing systems. PMID:27599635

  18. Coherence-Gated Sensorless Adaptive Optics Multiphoton Retinal Imaging.

    Science.gov (United States)

    Cua, Michelle; Wahl, Daniel J; Zhao, Yuan; Lee, Sujin; Bonora, Stefano; Zawadzki, Robert J; Jian, Yifan; Sarunic, Marinko V

    2016-01-01

    Multiphoton microscopy enables imaging deep into scattering tissues. The efficient generation of non-linear optical effects is related to both the pulse duration (typically on the order of femtoseconds) and the size of the focused spot. Aberrations introduced by refractive index inhomogeneity in the sample distort the wavefront and enlarge the focal spot, which reduces the multiphoton signal. Traditional approaches to adaptive optics wavefront correction are not effective in thick or multi-layered scattering media. In this report, we present sensorless adaptive optics (SAO) using low-coherence interferometric detection of the excitation light for depth-resolved aberration correction of two-photon excited fluorescence (TPEF) in biological tissue. We demonstrate coherence-gated SAO TPEF using a transmissive multi-actuator adaptive lens for in vivo imaging in a mouse retina. This configuration has significant potential for reducing the laser power required for adaptive optics multiphoton imaging, and for facilitating integration with existing systems. PMID:27599635

  19. Integration of optical imaging with a small animal irradiator

    International Nuclear Information System (INIS)

    Purpose: The authors describe the integration of optical imaging with a targeted small animal irradiator device, focusing on design, instrumentation, 2D to 3D image registration, 2D targeting, and the accuracy of recovering and mapping the optical signal to a 3D surface generated from the cone-beam computed tomography (CBCT) imaging. The integration of optical imaging will improve targeting of the radiation treatment and offer longitudinal tracking of tumor response of small animal models treated using the system. Methods: The existing image-guided small animal irradiator consists of a variable kilovolt (peak) x-ray tube mounted opposite an aSi flat panel detector, both mounted on a c-arm gantry. The tube is used for both CBCT imaging and targeted irradiation. The optical component employs a CCD camera perpendicular to the x-ray treatment/imaging axis with a computer controlled filter for spectral decomposition. Multiple optical images can be acquired at any angle as the gantry rotates. The optical to CBCT registration, which uses a standard pinhole camera model, was modeled and tested using phantoms with markers visible in both optical and CBCT images. Optically guided 2D targeting in the anterior/posterior direction was tested on an anthropomorphic mouse phantom with embedded light sources. The accuracy of the mapping of optical signal to the CBCT surface was tested using the same mouse phantom. A surface mesh of the phantom was generated based on the CBCT image and optical intensities projected onto the surface. The measured surface intensity was compared to calculated surface for a point source at the actual source position. The point-source position was also optimized to provide the closest match between measured and calculated intensities, and the distance between the optimized and actual source positions was then calculated. This process was repeated for multiple wavelengths and sources. Results: The optical to CBCT registration error was 0.8 mm. Two

  20. Integration of optical imaging with a small animal irradiator

    Energy Technology Data Exchange (ETDEWEB)

    Weersink, Robert A., E-mail: robert.weersink@rmp.uhn.on.ca [Radiation Medicine Program, Princess Margaret Hospital, 610 University Avenue, Toronto, Ontario M5G 2M9, Canada and Techna Institute, University Health Network, 124-100 College Street, Toronto, Ontario M5G 1P5 (Canada); Ansell, Steve; Wang, An; Wilson, Graham [Radiation Medicine Program, Princess Margaret Hospital, 610 University Avenue, Toronto, Ontario M5G 2M9 (Canada); Shah, Duoaud [Techna Institute, University Health Network, 124-100 College Street, Toronto, Ontario M5G 1P5 (Canada); Lindsay, Patricia E. [Radiation Medicine Program, Princess Margaret Hospital, 610 University Avenue, Toronto, Ontario M5G 2M9, Canada and Department of Radiation Oncology, University of Toronto, Toronto, Ontario M5S 1A1 (Canada); Jaffray, David A. [Radiation Medicine Program, Princess Margaret Hospital, 610 University Avenue, Toronto, Ontario M5G 2M9 (Canada); Techna Institute, University Health Network, 124-100 College Street, Toronto, Ontario M5G 1P5 (Canada); Department of Radiation Oncology, University of Toronto, Toronto, Ontario M5S 1A1 (Canada); Ontario Cancer Institute, Princess Margaret Hospital, 610 University Avenue, Toronto, Ontario M5G 2M9 (Canada); Department of Medical Biophysics, University of Toronto, Toronto, Ontario M5S 1A1 (Canada)

    2014-10-15

    Purpose: The authors describe the integration of optical imaging with a targeted small animal irradiator device, focusing on design, instrumentation, 2D to 3D image registration, 2D targeting, and the accuracy of recovering and mapping the optical signal to a 3D surface generated from the cone-beam computed tomography (CBCT) imaging. The integration of optical imaging will improve targeting of the radiation treatment and offer longitudinal tracking of tumor response of small animal models treated using the system. Methods: The existing image-guided small animal irradiator consists of a variable kilovolt (peak) x-ray tube mounted opposite an aSi flat panel detector, both mounted on a c-arm gantry. The tube is used for both CBCT imaging and targeted irradiation. The optical component employs a CCD camera perpendicular to the x-ray treatment/imaging axis with a computer controlled filter for spectral decomposition. Multiple optical images can be acquired at any angle as the gantry rotates. The optical to CBCT registration, which uses a standard pinhole camera model, was modeled and tested using phantoms with markers visible in both optical and CBCT images. Optically guided 2D targeting in the anterior/posterior direction was tested on an anthropomorphic mouse phantom with embedded light sources. The accuracy of the mapping of optical signal to the CBCT surface was tested using the same mouse phantom. A surface mesh of the phantom was generated based on the CBCT image and optical intensities projected onto the surface. The measured surface intensity was compared to calculated surface for a point source at the actual source position. The point-source position was also optimized to provide the closest match between measured and calculated intensities, and the distance between the optimized and actual source positions was then calculated. This process was repeated for multiple wavelengths and sources. Results: The optical to CBCT registration error was 0.8 mm. Two

  1. Digital image compression for a 2f multiplexing optical setup

    Science.gov (United States)

    Vargas, J.; Amaya, D.; Rueda, E.

    2016-07-01

    In this work a virtual 2f multiplexing system was implemented in combination with digital image compression techniques and redundant information elimination. Depending on the image type to be multiplexed, a memory-usage saving of as much as 99% was obtained. The feasibility of the system was tested using three types of images, binary characters, QR codes, and grey level images. A multiplexing step was implemented digitally, while a demultiplexing step was implemented in a virtual 2f optical setup following real experimental parameters. To avoid cross-talk noise, each image was codified with a specially designed phase diffraction carrier that would allow the separation and relocation of the multiplexed images on the observation plane by simple light propagation. A description of the system is presented together with simulations that corroborate the method. The present work may allow future experimental implementations that will make use of all the parallel processing capabilities of optical systems.

  2. Optical emission spectroscopic diagnostics of a non-thermal atmospheric pressure helium-oxygen plasma jet for biomedical applications

    Energy Technology Data Exchange (ETDEWEB)

    Thiyagarajan, Magesh; Sarani, Abdollah; Nicula, Cosmina [Plasma Engineering Research Laboratory (PERL), College of Science and Engineering, Texas A and M University-Corpus Christi, Texas 78412 (United States)

    2013-06-21

    In this work, we have applied optical emission spectroscopy diagnostics to investigate the characteristics of a non-thermal atmospheric pressure helium plasma jet. The discharge characteristics in the active and afterglow region of the plasma jet, that are critical for biomedical applications, have been investigated. The voltage-current characteristics of the plasma discharge were analyzed and the average plasma power was measured to be around 18 W. The effect of addition of small fractions of oxygen at 0.1%-0.5% on the plasma jet characteristics was studied. The addition of oxygen resulted in a decrease in plasma plume length due to the electronegativity property of oxygen. Atomic and molecular lines of selected reactive plasma species that are considered to be useful to induce biochemical reactions such as OH transitions A{sup 2}{Sigma}{sup +}({nu}=0,1){yields}X{sup 2}{Pi}({Delta}{nu}=0) at 308 nm and A{sup 2}{Sigma}{sup +}({nu}=0,1){yields}X{sup 2}{Pi}({Delta}{nu}=1) at 287 nm, O I transitions 3p{sup 5}P{yields}3s{sup 5}S{sup 0} at 777.41 nm, and 3p{sup 3}P{yields}3s{sup 3}S{sup 0} at 844.6 nm, N{sub 2}(C-B) second positive system with electronic transition C{sup 3}{Pi}{sub u}{sup {yields}}B{sup 3}{Pi}{sub g}'' in the range of 300-450 nm and N{sub 2}{sup +}(B-X) first negative system with electronic transition B{sup 2}{Sigma}{sub u}{sup +}{yields}X{sup 2}{Sigma}{sub g}{sup +}({Delta}{nu}=0) at 391.4 nm have been studied. The atomic emission lines of helium were identified, including the He I transitions 3p{sup 3}P{sup 0}{yields}2s{sup 3}S at 388.8 nm, 3p{sup 1}P{sup 0}{yields} 2s{sup 1}S at 501.6 nm, 3d{sup 3}D{yields}2p{sup 3}P{sup 0} at 587.6 nm, 3d{sup 1}D{yields}2p{sup 1}P{sup 0} at 667.8 nm, 3s{sup 3}S{sup 1}{yields}2p{sup 3}P{sup 0} at 706.5 nm, 3s{sup 1}S{sup 0}{yields}2p{sup 1}P{sup 0} at 728.1 nm, and H{sub {alpha}} transition 2p-3d at 656.3 nm. Using a spectral fitting method, the OH radicals at 306-312 nm, the rotational and vibrational

  3. Sensitivity of synthetic aperture laser optical feedback imaging

    CERN Document Server

    Glastre, Wilfried; Jacquin, Olivier; Hugon, Olivier; De Chatellus, Hugues Guillet

    2012-01-01

    In this paper we compare the sensitivity of two imaging configurations both based on Laser Optical Feedback Imaging (LOFI). The first one is direct imaging, which uses conventional optical focalisation on target and the second one is made by Synthetic Aperture (SA) Laser, which uses numerical focalisation. We show that SA configuration allows to obtain good resolutions with high working distance and that the drawback of SA imagery is that it has a worse photometric balance in comparison to conventional microscope. This drawback is partially compensated by the important sensitivity of LOFI. Another interest of SA relies on the capacity of getting a 3D information in a single x-y scan.

  4. Specifying and controlling the optical image on the human retina.

    OpenAIRE

    Westheimer, Gerald

    2006-01-01

    A review covering the trends that led to the current state of knowledge in the areas of: (a) schematic models of the eye, and the definition of the retinal image in terms of first-order optics; (b) the description of the actual image on the retina and methods for accessing and characterizing it; (c) available procedures for controlling the quality of the retinal image in defined situations; and (d) intra-receptoral optical effects that cause differences between the light distribution on the r...

  5. Time-gated optical imaging through turbid media using stimulated Raman scattering: Studies on image contrast

    Indian Academy of Sciences (India)

    K Divakar Rao; H S Patel; B Jain; P K Gupta

    2005-02-01

    In this paper, we report the development of experimental set-up for timegated optical imaging through turbid media using stimulated Raman scattering. Our studies on the contrast of time-gated images show that for a given optical thickness, the image contrast is better for sample with lower scattering coefficient and higher physical thickness, and that the contrast improves with decreasing value of anisotropy parameters of the scatterers. These results are consistent with time-resolved Monte Carlo simulations.

  6. Noncontact optical imaging in mice with full angular coverage and automatic surface extraction

    Science.gov (United States)

    Meyer, Heiko; Garofalakis, Anikitos; Zacharakis, Giannis; Psycharakis, Stylianos; Mamalaki, Clio; Kioussis, Dimitris; Economou, Eleftherios N.; Ntziachristos, Vasilis; Ripoll, Jorge

    2007-06-01

    During the past decade, optical imaging combined with tomographic approaches has proved its potential in offering quantitative three-dimensional spatial maps of chromophore or fluorophore concentration in vivo. Due to its direct application in biology and biomedicine, diffuse optical tomography (DOT) and its fluorescence counterpart, fluorescence molecular tomography (FMT), have benefited from an increase in devoted research and new experimental and theoretical developments, giving rise to a new imaging modality. The most recent advances in FMT and DOT are based on the capability of collecting large data sets by using CCDs as detectors, and on the ability to include multiple projections through recently developed noncontact approaches. For these to be implemented, we have developed an imaging setup that enables three-dimensional imaging of arbitrary shapes in fluorescence or absorption mode that is appropriate for small animal imaging. This is achieved by implementing a noncontact approach both for sources and detectors and coregistering surface geometry measurements using the same CCD camera. A thresholded shadowgrammetry approach is applied to the geometry measurements to retrieve the surface mesh. We present the evaluation of the system and method in recovering three-dimensional surfaces from phantom data and live mice. The approach is used to map the measured in vivo fluorescence data onto the tissue surface by making use of the free-space propagation equations, as well as to reconstruct fluorescence concentrations inside highly scattering tissuelike phantom samples. Finally, the potential use of this setup for in vivo small animal imaging and its impact on biomedical research is discussed.

  7. Optical image hiding based on computational ghost imaging

    Science.gov (United States)

    Wang, Le; Zhao, Shengmei; Cheng, Weiwen; Gong, Longyan; Chen, Hanwu

    2016-05-01

    Imaging hiding schemes play important roles in now big data times. They provide copyright protections of digital images. In the paper, we propose a novel image hiding scheme based on computational ghost imaging to have strong robustness and high security. The watermark is encrypted with the configuration of a computational ghost imaging system, and the random speckle patterns compose a secret key. Least significant bit algorithm is adopted to embed the watermark and both the second-order correlation algorithm and the compressed sensing (CS) algorithm are used to extract the watermark. The experimental and simulation results show that the authorized users can get the watermark with the secret key. The watermark image could not be retrieved when the eavesdropping ratio is less than 45% with the second-order correlation algorithm, whereas it is less than 20% with the TVAL3 CS reconstructed algorithm. In addition, the proposed scheme is robust against the 'salt and pepper' noise and image cropping degradations.

  8. Application of optical coherence tomography based microangiography for cerebral imaging

    Science.gov (United States)

    Baran, Utku; Wang, Ruikang K.

    2016-03-01

    Requirements of in vivo rodent brain imaging are hard to satisfy using traditional technologies such as magnetic resonance imaging and two-photon microscopy. Optical coherence tomography (OCT) is an emerging tool that can easily reach at high speeds and provide high resolution volumetric images with a relatively large field of view for rodent brain imaging. Here, we provide the overview of recent developments of functional OCT based imaging techniques for neuroscience applications on rodents. Moreover, a summary of OCT-based microangiography (OMAG) studies for stroke and traumatic brain injury cases on rodents are provided.

  9. Scalable multiplexing for parallel imaging with interleaved optical coherence tomography

    OpenAIRE

    Lee, Hee Yoon; Marvdashti, Tahereh; Duan, Lian; Khan, Saara A.; Ellerbee, Audrey K.

    2014-01-01

    We demonstrate highly parallel imaging with interleaved optical coherence tomography (iOCT) using an in-house-fabricated, air-spaced virtually-imaged phased array (VIPA). The air-spaced VIPA performs spectral encoding of the interferograms from multiple lateral points within a single sweep of the source and allows us to tune and balance several imaging parameters: number of multiplexed points, ranging depth, and sensitivity. In addition to a thorough discussion of the parameters and operating...

  10. Endoscopic Optical Coherence Tomography (OCT: Advances in Gastrointestinal Imaging

    Directory of Open Access Journals (Sweden)

    Tejas S. Kirtane

    2014-01-01

    Full Text Available In the rapidly evolving field of endoscopic gastrointestinal imaging, Optical Coherence Tomography (OCT has found many diverse applications. We present the current status of OCT and its practical applications in imaging normal and abnormal mucosa in the esophagus, stomach, small and large intestines, and biliary and pancreatic ducts. We highlight technical aspects and principles of imaging, assess published data, and suggest future directions for OCT-guided evaluation and therapy.

  11. Large Scale 3D Image Reconstruction in Optical Interferometry

    CERN Document Server

    Schutz, Antony; Mary, David; Thiébaut, Eric; Soulez, Ferréol

    2015-01-01

    Astronomical optical interferometers (OI) sample the Fourier transform of the intensity distribution of a source at the observation wavelength. Because of rapid atmospheric perturbations, the phases of the complex Fourier samples (visibilities) cannot be directly exploited , and instead linear relationships between the phases are used (phase closures and differential phases). Consequently, specific image reconstruction methods have been devised in the last few decades. Modern polychromatic OI instruments are now paving the way to multiwavelength imaging. This paper presents the derivation of a spatio-spectral ("3D") image reconstruction algorithm called PAINTER (Polychromatic opticAl INTErferometric Reconstruction software). The algorithm is able to solve large scale problems. It relies on an iterative process, which alternates estimation of polychromatic images and of complex visibilities. The complex visibilities are not only estimated from squared moduli and closure phases, but also from differential phase...

  12. Stochastic Optics: A Scattering Mitigation Framework for Radio Interferometric Imaging

    CERN Document Server

    Johnson, Michael D

    2016-01-01

    Just as turbulence in the Earth's atmosphere can severely limit the angular resolution of optical telescopes, turbulence in the ionized interstellar medium fundamentally limits the resolution of radio telescopes. We present a scattering mitigation framework for radio imaging with very long baseline interferometry (VLBI) that partially overcomes this limitation. Our framework, "stochastic optics," derives from a simplification of strong interstellar scattering to separate small-scale ("diffractive") effects from large-scale ("refractive") effects, thereby separating deterministic and random contributions to the scattering. Stochastic optics extends traditional synthesis imaging by simultaneously reconstructing an unscattered image and its refractive perturbations. Its advantages over direct imaging come from utilizing the many deterministic properties of the scattering -- such as the time-averaged "blurring," polarization independence, and the deterministic evolution in frequency and time -- while still accoun...

  13. Diffusion MR Imaging of Postoperative Bilateral Acute Ischemic Optic Neuropathy

    Energy Technology Data Exchange (ETDEWEB)

    Kannan, Anusha; Srinivasan, Sivasubramanian [Khoo Teck Puat Hospital, Singapore (Singapore)

    2012-09-15

    We read with great interest, the case report on ischemic optic neuropathy (1). We would like to add a few points concerning the blood supply of the optic nerve and the correlation with the development of post-operative ischemic neuropathy. Actually, the perioperative or post-operative vision loss (postoperative ischemic neuropathy) is most likely due to ischemic optic neuropathy. Ischemic optic neuropathy (2) is classified as an anterior ischemic optic neuropathy (AION) and posterior ischemic optic neuropathy (PION). This classification is based on the fact that blood supply (2) to the anterior segment of the optic nerve (part of the optic nerve in the scleral canal and the optic disc) is supplied by short posterior ciliary vessels or anastamotic ring branches around the optic nerve. The posterior part of the optic canal is relatively less perfused, and is supplied by ophthalmic artery and central fibres are perfused by a central retinal artery. So, in the post-operative period, the posterior part of the optic nerve is more vulnerable for ischemia, especially, after major surgeries (3), one of the theories being hypotension or anaemia (2) and resultant decreased perfusion. The onset of PION is slower than the anterior ischemic optic neuropathy. AION on the other hand, is usually spontaneous (idiopathic) or due to arteritis, and is usually sudden in its onset. The reported case is most likely a case of PION. The role of imaging, especially the diffusion weighted magnetic resonance imaging, is very important because the ophthalmoscopic findings in early stages of PION is normal, and it may delay the diagnosis. On the other hand, edema of the disc is usually seen in the early stages of AION.

  14. Predictive spectroscopy and chemical imaging based on novel optical systems

    Science.gov (United States)

    Nelson, Matthew Paul

    1998-10-01

    This thesis describes two futuristic optical systems designed to surpass contemporary spectroscopic methods for predictive spectroscopy and chemical imaging. These systems are advantageous to current techniques in a number of ways including lower cost, enhanced portability, shorter analysis time, and improved S/N. First, a novel optical approach to predicting chemical and physical properties based on principal component analysis (PCA) is proposed and evaluated. A regression vector produced by PCA is designed into the structure of a set of paired optical filters. Light passing through the paired filters produces an analog detector signal directly proportional to the chemical/physical property for which the regression vector was designed. Second, a novel optical system is described which takes a single-shot approach to chemical imaging with high spectroscopic resolution using a dimension-reduction fiber-optic array. Images are focused onto a two- dimensional matrix of optical fibers which are drawn into a linear distal array with specific ordering. The distal end is imaged with a spectrograph equipped with an ICCD camera for spectral analysis. Software is used to extract the spatial/spectral information contained in the ICCD images and deconvolute them into wave length-specific reconstructed images or position-specific spectra which span a multi-wavelength space. This thesis includes a description of the fabrication of two dimension-reduction arrays as well as an evaluation of the system for spatial and spectral resolution, throughput, image brightness, resolving power, depth of focus, and channel cross-talk. PCA is performed on the images by treating rows of the ICCD images as spectra and plotting the scores of each PC as a function of reconstruction position. In addition, iterative target transformation factor analysis (ITTFA) is performed on the spectroscopic images to generate ``true'' chemical maps of samples. Univariate zero-order images, univariate first

  15. Ultrathin Optics for Low-Profile Innocuous Imager

    Energy Technology Data Exchange (ETDEWEB)

    Boye, Robert R. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Photonic Microsystems Technologies; Brady, Gregory Robert [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Photonic Microsystems Technologies; Nelson, Cynthia Lee [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Systems Engineering I; Briggs, Ronald D. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Integrated Microdevice Systems; Jared, Bradley Howell [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Advanced Prototyping S& T; Warren, Mial E. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Microsystems Partnerships

    2009-09-01

    This project demonstrates the feasibility of a novel imager with a thickness measured in microns rather than inches. Traditional imaging systems, i.e. cameras, cannot provide both the necessary resolution and innocuous form factor required in many data acquisition applications. Designing an imaging system with an extremely thin form factor (less than 1 mm) immediately presents several technical challenges. For instance, the thickness of the optical lens must be reduced drastically from currently available lenses. Additionally, the image circle is reduced by a factor equal to the reduction in focal length. This translates to fewer detector pixels across the image. To reduce the optical total track requires the use of specialized micro-optics and the required resolution necessitates the use of a new imaging modality. While a single thin imager will not produce the desired output, several thin imagers can be multiplexed and their low resolution (LR) outputs used together in post-processing to produce a high resolution (HR) image. The utility of an Iterative Back Projection (IBP) algorithm has been successfully demonstrated for performing the required post-processing. Advanced fabrication of a thin lens was also demonstrated and experimental results using this lens as well as commercially available lenses are presented.

  16. Do Physicians Make Their Articles Readable for Their Blind or Low-Vision Patients? An Analysis of Current Image Processing Practices in Biomedical Journals from the Point of View of Accessibility

    OpenAIRE

    Splendiani, Bruno; Ribera, Mireia; Garcia, Roberto; Termens, Miquel

    2014-01-01

    Visual content in biomedical academic papers is a growing source of critical information, but it is not always fully readable for people with visual impairments. We aimed to assess current image processing practices, accessibility policies, and submission policies in a sample of 12 highly cited biomedical journals. We manually checked the application of text-based alternative image descriptions for every image in 12 articles (one for each journal). We determined whether the journals claimed t...

  17. Gated frequency-resolved optical imaging with an optical parametric amplifier for medical applications

    Energy Technology Data Exchange (ETDEWEB)

    Cameron, S.M.; Bliss, D.E.

    1997-02-01

    Implementation of optical imagery in a diffuse inhomogeneous medium such as biological tissue requires an understanding of photon migration and multiple scattering processes which act to randomize pathlength and degrade image quality. The nature of transmitted light from soft tissue ranges from the quasi-coherent properties of the minimally scattered component to the random incoherent light of the diffuse component. Recent experimental approaches have emphasized dynamic path-sensitive imaging measurements with either ultrashort laser pulses (ballistic photons) or amplitude modulated laser light launched into tissue (photon density waves) to increase image resolution and transmissive penetration depth. Ballistic imaging seeks to compensate for these {open_quotes}fog-like{close_quotes} effects by temporally isolating the weak early-arriving image-bearing component from the diffusely scattered background using a subpicosecond optical gate superimposed on the transmitted photon time-of-flight distribution. The authors have developed a broadly wavelength tunable (470 nm -2.4 {mu}m), ultrashort amplifying optical gate for transillumination spectral imaging based on optical parametric amplification in a nonlinear crystal. The time-gated image amplification process exhibits low noise and high sensitivity, with gains greater than 104 achievable for low light levels. We report preliminary benchmark experiments in which this system was used to reconstruct, spectrally upcovert, and enhance near-infrared two-dimensional images with feature sizes of 65 {mu}m/mm{sup 2} in background optical attenuations exceeding 10{sup 12}. Phase images of test objects exhibiting both absorptive contrast and diffuse scatter were acquired using a self-referencing Shack-Hartmann wavefront sensor in combination with short-pulse quasi-ballistic gating. The sensor employed a lenslet array based on binary optics technology and was sensitive to optical path distortions approaching {lambda}/100.

  18. Ex vivo imaging of human thyroid pathology using integrated optical coherence tomography and optical coherence microscopy

    Science.gov (United States)

    Zhou, Chao; Wang, Yihong; Aguirre, Aaron D.; Tsai, Tsung-Han; Cohen, David W.; Connolly, James L.; Fujimoto, James G.

    2010-01-01

    We evaluate the feasibility of optical coherence tomography (OCT) and optical coherence microscopy (OCM) for imaging of benign and malignant thyroid lesions ex vivo using intrinsic optical contrast. 34 thyroid gland specimens are imaged from 17 patients, covering a spectrum of pathology ranging from normal thyroid to benign disease/neoplasms (multinodular colloid goiter, Hashimoto's thyroiditis, and follicular adenoma) and malignant thyroid tumors (papillary carcinoma and medullary carcinoma). Imaging is performed using an integrated OCT and OCM system, with papillary architecture, microfollicules, psammomatous calcifications, or replacement of normal follicular architecture with sheets/nests of tumor cells, can be identified from OCT and OCM images and are clearly differentiable from normal or benign thyroid tissues. With further development of needle-based imaging probes, OCT and OCM could be promising techniques to use for the screening of thyroid nodules and to improve the diagnostic specificity of fine needle aspiration evaluation.

  19. Diffractive optical element for creating visual 3D images.

    Science.gov (United States)

    Goncharsky, Alexander; Goncharsky, Anton; Durlevich, Svyatoslav

    2016-05-01

    A method is proposed to compute and synthesize the microrelief of a diffractive optical element to produce a new visual security feature - the vertical 3D/3D switch effect. The security feature consists in the alternation of two 3D color images when the diffractive element is tilted up/down. Optical security elements that produce the new security feature are synthesized using electron-beam technology. Sample optical security elements are manufactured that produce 3D to 3D visual switch effect when illuminated by white light. Photos and video records of the vertical 3D/3D switch effect of real optical elements are presented. The optical elements developed can be replicated using standard equipment employed for manufacturing security holograms. The new optical security feature is easy to control visually, safely protected against counterfeit, and designed to protect banknotes, documents, ID cards, etc. PMID:27137530

  20. Molecular image in biomedical research. Molecular imaging unit of the National Cancer Research Center; Imagen molecular an investigation biomedica. La Unidad de Imagen Molecular del Centro Nacional de Investigaciones Oncologicas

    Energy Technology Data Exchange (ETDEWEB)

    Perez Bruzon, J.; Mulero Anhiorte, F.

    2010-07-01

    This article has two basic objectives. firstly, it will review briefly the most important imaging techniques used in biomedical research indicting the most significant aspects related to their application in the preclinical stage. Secondly, it will present a practical application of these techniques in a pure biomedical research centre (not associated to a clinical facility). Practical aspects such as organisation, equipment, work norms, shielding of the Spanish National Cancer Research Centre (CNIO) Imaging Unit will be shown. This is a pioneering facility in the application of these techniques in research centres without any dependence or any direct relationship with other hospital Nuclear Medicine services. (Author) 7 refs.

  1. Reticle defect sizing of optical proximity correction defects using SEM imaging and image analysis techniques

    Science.gov (United States)

    Zurbrick, Larry S.; Wang, Lantian; Konicek, Paul; Laird, Ellen R.

    2000-07-01

    Sizing of programmed defects on optical proximity correction (OPC) feature sis addressed using high resolution scanning electron microscope (SEM) images and image analysis techniques. A comparison and analysis of different sizing methods is made. This paper addresses the issues of OPC defect definition and discusses the experimental measurement results obtained by SEM in combination with image analysis techniques.

  2. Optical design and characterization of an advanced computational imaging system

    Science.gov (United States)

    Shepard, R. Hamilton; Fernandez-Cull, Christy; Raskar, Ramesh; Shi, Boxin; Barsi, Christopher; Zhao, Hang

    2014-09-01

    We describe an advanced computational imaging system with an optical architecture that enables simultaneous and dynamic pupil-plane and image-plane coding accommodating several task-specific applications. We assess the optical requirement trades associated with custom and commercial-off-the-shelf (COTS) optics and converge on the development of two low-cost and robust COTS testbeds. The first is a coded-aperture programmable pixel imager employing a digital micromirror device (DMD) for image plane per-pixel oversampling and spatial super-resolution experiments. The second is a simultaneous pupil-encoded and time-encoded imager employing a DMD for pupil apodization or a deformable mirror for wavefront coding experiments. These two testbeds are built to leverage two MIT Lincoln Laboratory focal plane arrays - an orthogonal transfer CCD with non-uniform pixel sampling and on-chip dithering and a digital readout integrated circuit (DROIC) with advanced on-chip per-pixel processing capabilities. This paper discusses the derivation of optical component requirements, optical design metrics, and performance analyses for the two testbeds built.

  3. Biomedical photonics handbook

    CERN Document Server

    Vo-Dinh, Tuan

    2003-01-01

    1.Biomedical Photonics: A Revolution at the Interface of Science and Technology, T. Vo-DinhPHOTONICS AND TISSUE OPTICS2.Optical Properties of Tissues, J. Mobley and T. Vo-Dinh3.Light-Tissue Interactions, V.V. Tuchin 4.Theoretical Models and Algorithms in Optical Diffusion Tomography, S.J. Norton and T. Vo-DinhPHOTONIC DEVICES5.Laser Light in Biomedicine and the Life Sciences: From the Present to the Future, V.S. Letokhov6.Basic Instrumentation in Photonics, T. Vo-Dinh7.Optical Fibers and Waveguides for Medical Applications, I. Gannot and

  4. Contrast-based sensorless adaptive optics for retinal imaging.

    Science.gov (United States)

    Zhou, Xiaolin; Bedggood, Phillip; Bui, Bang; Nguyen, Christine T O; He, Zheng; Metha, Andrew

    2015-09-01

    Conventional adaptive optics ophthalmoscopes use wavefront sensing methods to characterize ocular aberrations for real-time correction. However, there are important situations in which the wavefront sensing step is susceptible to difficulties that affect the accuracy of the correction. To circumvent these, wavefront sensorless adaptive optics (or non-wavefront sensing AO; NS-AO) imaging has recently been developed and has been applied to point-scanning based retinal imaging modalities. In this study we show, for the first time, contrast-based NS-AO ophthalmoscopy for full-frame in vivo imaging of human and animal eyes. We suggest a robust image quality metric that could be used for any imaging modality, and test its performance against other metrics using (physical) model eyes. PMID:26417525

  5. Optical and Digital Microscopic Imaging Techniques and Applications in Pathology

    Directory of Open Access Journals (Sweden)

    Xiaodong Chen

    2011-01-01

    Full Text Available The conventional optical microscope has been the primary tool in assisting pathological examinations. The modern digital pathology combines the power of microscopy, electronic detection, and computerized analysis. It enables cellular-, molecular-, and genetic-imaging at high efficiency and accuracy to facilitate clinical screening and diagnosis. This paper first reviews the fundamental concepts of microscopic imaging and introduces the technical features and associated clinical applications of optical microscopes, electron microscopes, scanning tunnel microscopes, and fluorescence microscopes. The interface of microscopy with digital image acquisition methods is discussed. The recent developments and future perspectives of contemporary microscopic imaging techniques such as three-dimensional and in vivo imaging are analyzed for their clinical potentials.

  6. CT guided diffuse optical tomography for breast cancer imaging

    Science.gov (United States)

    Baikejiang, Reheman; Zhang, Wei; Zhu, Dianwen; Li, Changqing

    2016-03-01

    Diffuse optical tomography (DOT) has attracted attentions in the last two decades due to its intrinsic sensitivity in imaging chromophores of tissues such as blood, water, and lipid. However, DOT has not been clinically accepted yet due to its low spatial resolution caused by strong optical scattering in tissues. Structural guidance provided by an anatomical imaging modality enhances the DOT imaging substantially. Here, we propose a computed tomography (CT) guided multispectral DOT imaging system for breast cancer detection. To validate its feasibility, we have built a prototype DOT imaging system which consists of a laser at wavelengths of 650 and an electron multiplying charge coupled device (EMCCD) camera. We have validated the CT guided DOT reconstruction algorithms with numerical simulations and phantom experiments, in which different imaging setup parameters, such as projection number of measurements, the width of measurement patch, have been investigated. Our results indicate that an EMCCD camera with air cooling is good enough for the transmission mode DOT imaging. We have also found that measurements at six projections are sufficient for DOT to reconstruct the optical targets with 4 times absorption contrast when the CT guidance is applied. Finally, we report our effort and progress on the integration of the multispectral DOT imaging system into a breast CT scanner.

  7. Sodium-22-radiolabeled silica nanoparticles as new radiotracer for biomedical applications: in vivo positron emission tomography imaging, biodistribution, and biocompatibility

    Directory of Open Access Journals (Sweden)

    Al Faraj A

    2015-10-01

    Full Text Available Achraf Al Faraj,1 Basem Alotaibi,2 Abjal Pasha Shaik,3 Khaled Z Shamma,1 Ibrahim Al Jammaz,2 Jürgen Gerl4 1Molecular and Cellular Imaging Lab, Department of Radiological Sciences, College of Applied Medical Sciences, King Saud University, 2Cyclotron and Radiopharmaceutical Department, King Faisal Specialist Hospital and Research Centre, 3Department of Clinical Lab Sciences, College of Applied Medical Sciences, King Saud University, Riyadh, Saudi Arabia; 4GSI Helmholtzzentrum für Schwerionenforschung GmbH, Darmstadt, Germany Abstract: Despite their advantageous chemical properties for nuclear imaging, radioactive sodium-22 (22Na tracers have been excluded for biomedical applications because of their extremely long lifetime. In the current study, we proposed, for the first time, the use of 22Na radiotracers for pre-clinical applications by efficiently loading with silica nanoparticles (SiNPs and thus offering a new life for this radiotracer. Crown-ether-conjugated SiNPs (300 nm; -0.18±0.1 mV were successfully loaded with 22Na with a loading efficacy of 98.1%±1.4%. Noninvasive positron emission tomography imaging revealed a transient accumulation of 22Na-loaded SiNPs in the liver and to a lower extent in the spleen, kidneys, and lung. However, the signal gradually decreased in a time-dependent manner to become not detectable starting from 2 weeks postinjection. These observations were confirmed ex vivo by quantifying 22Na radioactivity using γ-counter and silicon content using inductively coupled plasma-mass spectrometry in the blood and the different organs of interest. Quantification of Si content in the urine and feces revealed that SiNPs accumulated in the organs were cleared from the body within a period of 2 weeks and completely in 1 month. Biocompatibility evaluations performed during the 1-month follow-up study to assess the possibility of synthesized nanocarriers to induce oxidative stress or DNA damage confirmed their safety for

  8. High-resolution retinal imaging using adaptive optics and Fourier-domain optical coherence tomography

    Science.gov (United States)

    Olivier, Scot S.; Werner, John S.; Zawadzki, Robert J.; Laut, Sophie P.; Jones, Steven M.

    2010-09-07

    This invention permits retinal images to be acquired at high speed and with unprecedented resolution in three dimensions (4.times.4.times.6 .mu.m). The instrument achieves high lateral resolution by using adaptive optics to correct optical aberrations of the human eye in real time. High axial resolution and high speed are made possible by the use of Fourier-domain optical coherence tomography. Using this system, we have demonstrated the ability to image microscopic blood vessels and the cone photoreceptor mosaic.

  9. Integrated structural and functional optical imaging combining spectral-domain optical coherence and multiphoton microscopy

    CERN Document Server

    Vinegoni, C; Luo, W; Marks, D L; Ralston, T; Tan, W

    2005-01-01

    An integrated microscope that combines different optical techniques for simultaneous imaging is demonstrated. The microscope enables spectral-domain optical coherence microscopy based on optical backscatter, and multi-photon microscopy for the detection of two-photon fluorescence and second harmonic generation signals. The unique configuration of this integrated microscope allows for the simultaneous acquisition of both anatomical (structural) and functional imaging information with particular emphasis for applications in the fields of tissue engineering and cell biology. In addition, the contemporary analysis of the spectroscopic features can enhance contrast by differentiating among different tissue components.

  10. Biomedical imaging and therapy with physically and physiologically tailored magnetic nanoparticles

    Science.gov (United States)

    Khandhar, Amit Praful

    Magnetic particle imaging (MPI) and magnetic fluid hyperthermia (MFH) are emerging imaging and therapy approaches that have the potential to improve diagnostic safety and disease management of heart disease and cancer - the number 1 and 2 leading causes of deaths in the United States. MPI promises real-time, tomographic and quantitative imaging of superparamagnetic iron oxide nanoparticle (SPION) tracers distributed in vivo, and is targeted to offer a safer angiography alternative for its first clinical application. MFH uses ac-fields to dissipate heat from SPIONs that can be delivered locally to promote hyperthermia therapy (~42°C) in cancer cells. Both technologies use safe radiofrequency magnetic fields to exploit the fundamental magnetic relaxation properties of superparamagnetic iron oxide nanoparticles (SPIONs), which must be tailored for optimal imaging in the case of MPI, and maximum hyperthermia potency in the case of MFH. Furthermore, the magnetic core and shell of SPIONs are both central to the optimization process; the shell, in particular, bridges the translational gap between the optimized core and its safe and effective use in the physiological environment. Unfortunately, existing SPIONs that were originally designed as MRI contrast agents lack the basic physical properties that enable the clinical translation of MPI and MFH. In this work, the core and shell of monodisperse SPIONs were optimized in concert to accomplish two equally important objectives: (1) biocompatibility, and (2) MPI and MFH efficacy of SPIONs in physiological environments. Critically, it was found that the physical and physiological responses of SPIONs are coupled, and impacting one can have consequences on the other. It was shown that the poly(ethylene glycol) (PEG)-based shell when properly optimized reduced protein adsorption to SPION surface and phagocytic uptake in macrophages - both prerequisites for designing long-circulating SPIONs. In MPI, tailoring the surface coating

  11. Optical double-image cryptography based on diffractive imaging with a laterally-translated phase grating.

    Science.gov (United States)

    Chen, Wen; Chen, Xudong; Sheppard, Colin J R

    2011-10-10

    In this paper, we propose a method using structured-illumination-based diffractive imaging with a laterally-translated phase grating for optical double-image cryptography. An optical cryptosystem is designed, and multiple random phase-only masks are placed in the optical path. When a phase grating is laterally translated just before the plaintexts, several diffraction intensity patterns (i.e., ciphertexts) can be correspondingly obtained. During image decryption, an iterative retrieval algorithm is developed to extract plaintexts from the ciphertexts. In addition, security and advantages of the proposed method are analyzed. Feasibility and effectiveness of the proposed method are demonstrated by numerical simulation results.

  12. Elucidation of the mechanisms of optical clearing in collagen tissue with multiphoton imaging.

    Science.gov (United States)

    Hovhannisyan, Vladimir; Hu, Po-Sheng; Chen, Shean-Jen; Kim, Chang-Seok; Dong, Chen-Yuan

    2013-04-01

    Optical clearing (OC) is a promising method to overcome limitations in biomedical depth-resolved optical studies. Mechanisms of OC in purified bovine Achilles tendon, chicken skin, and chicken tendon were studied using time-lapsed, three-dimensional second harmonic generation (SHG) and two-photon fluorescence microscopic imaging. Quantified nonlinear optical measurements allowed temporal separation of two processes in collagen OC with glycerol. The first one is a fast process of tissue dehydration accompanied with collagen shrinkage and the second relatively slow process is glycerol penetration into the interfibrillar space of collagen alongside with CF swelling. The use of 50% glycerol induced less-expressed OC via partial substitution of water molecules with glycerol molecules. We also found that phosphate-buffered saline- and glycerol-treatments were reversible, and fiber morphology and SHG signal intensity were recovered after the removal of immersion agents. It was shown that tissue OC was a dynamic process and elucidation of its physical mechanisms may help choose optimal diagnostic, treatment, and modification regimes for collagen-based as well as other types of biomaterials.

  13. Elucidation of the mechanisms of optical clearing in collagen tissue with multiphoton imaging.

    Science.gov (United States)

    Hovhannisyan, Vladimir; Hu, Po-Sheng; Chen, Shean-Jen; Kim, Chang-Seok; Dong, Chen-Yuan

    2013-04-01

    Optical clearing (OC) is a promising method to overcome limitations in biomedical depth-resolved optical studies. Mechanisms of OC in purified bovine Achilles tendon, chicken skin, and chicken tendon were studied using time-lapsed, three-dimensional second harmonic generation (SHG) and two-photon fluorescence microscopic imaging. Quantified nonlinear optical measurements allowed temporal separation of two processes in collagen OC with glycerol. The first one is a fast process of tissue dehydration accompanied with collagen shrinkage and the second relatively slow process is glycerol penetration into the interfibrillar space of collagen alongside with CF swelling. The use of 50% glycerol induced less-expressed OC via partial substitution of water molecules with glycerol molecules. We also found that phosphate-buffered saline- and glycerol-treatments were reversible, and fiber morphology and SHG signal intensity were recovered after the removal of immersion agents. It was shown that tissue OC was a dynamic process and elucidation of its physical mechanisms may help choose optimal diagnostic, treatment, and modification regimes for collagen-based as well as other types of biomaterials. PMID:23552636

  14. Optical asymmetric image encryption using gyrator wavelet transform

    Science.gov (United States)

    Mehra, Isha; Nishchal, Naveen K.

    2015-11-01

    In this paper, we propose a new optical information processing tool termed as gyrator wavelet transform to secure a fully phase image, based on amplitude- and phase-truncation approach. The gyrator wavelet transform constitutes four basic parameters; gyrator transform order, type and level of mother wavelet, and position of different frequency bands. These parameters are used as encryption keys in addition to the random phase codes to the optical cryptosystem. This tool has also been applied for simultaneous compression and encryption of an image. The system's performance and its sensitivity to the encryption parameters, such as, gyrator transform order, and robustness has also been analyzed. It is expected that this tool will not only update current optical security systems, but may also shed some light on future developments. The computer simulation results demonstrate the abilities of the gyrator wavelet transform as an effective tool, which can be used in various optical information processing applications, including image encryption, and image compression. Also this tool can be applied for securing the color image, multispectral, and three-dimensional images.

  15. Small Animal Radionuclide Imaging With Focusing Gamma-Ray Optics

    Energy Technology Data Exchange (ETDEWEB)

    Hill, R; Decker, T; Epstein, M; Ziock, K; Pivovaroff, M J; Craig, W W; Jernigan, J G; Barber, W B; Christensen, F E; Funk, T; Hailey, C J; Hasegawa, B H; Taylor, C

    2004-02-27

    Significant effort currently is being devoted to the development of noninvasive imaging systems that allow in vivo assessment of biological and biomolecular interactions in mice and other small animals. While physiological function in small animals can be localized and imaged using conventional radionuclide imaging techniques such as single-photon emission tomography (SPECT) and positron emission tomography (PET), these techniques inherently are limited to spatial resolutions of 1-2 mm. For this reason, we are developing a small animal radionuclide imaging system (SARIS) using grazing incidence optics to focus gamma-rays emitted by {sup 125}I and other radiopharmaceuticals. We have developed a prototype optic with sufficient accuracy and precision to focus the 27.5 keV photons from {sup 125}I onto a high-resolution imaging detector. Experimental measurements from the prototype have demonstrated that the optic can focus X-rays from a microfocus X-ray tube to a spot having physical dimensions (approximately 1500 microns half-power diameter) consistent with those predicted by theory. Our theoretical and numerical analysis also indicate that an optic can be designed and build that ultimately can achieve 100 {micro}m spatial resolution with sufficient efficiency to perform in vivo single photon emission imaging studies in small animal.

  16. Camera, handlens, and microscope optical system for imaging and coupled optical spectroscopy

    Science.gov (United States)

    Mungas, Greg S. (Inventor); Boynton, John (Inventor); Sepulveda, Cesar A. (Inventor); Nunes de Sepulveda, legal representative, Alicia (Inventor); Gursel, Yekta (Inventor)

    2012-01-01

    An optical system comprising two lens cells, each lens cell comprising multiple lens elements, to provide imaging over a very wide image distance and within a wide range of magnification by changing the distance between the two lens cells. An embodiment also provides scannable laser spectroscopic measurements within the field-of-view of the instrument.

  17. Evaluation of Fingerprint Images Captured by Optical Fingerprint Scanner

    Science.gov (United States)

    Takeuchi, Hideyo; Matsumoto, Noriyuki; Kuwayama, Kiyoaki; Umezaki, Taizo

    In this paper, we propose the way to evaluate fingerprint image-quality and how to discriminate remnants from captured images. First, we investigate evaluating fingerprint image-quality. Fingerprint image-quality can be digitized using the "measure" we proposed. We simulate using the dataset consists of 1425 fingerprint images captured from 57 people in Feb, which contains a lot of faded images. In the simulation using all our database, recognition rate is 95.6% while type II error is 0.01%. Recognition rate is improved to 98.1%, with rejecting 3.7% faded images evaluated by our measure from the database. Recognition rate is improved to 99.6%, rejecting 14.2% faded images. And we investigate the way to apply the measure of image-quality to fingerprint verification device with customer’s satisfaction in real world. Next we propose the way to discriminate between remnants and fingerprint images captured from optical scanner by using frequency analysis. We can perfectly prevent the fingerprint verification device from malfunctioning caused by remnant, when strong flashlight or direct sunlight slant in optical scanner in real world.

  18. Optical Imaging Sensors and Systems for Homeland Security Applications

    CERN Document Server

    Javidi, Bahram

    2006-01-01

    Optical and photonic systems and devices have significant potential for homeland security. Optical Imaging Sensors and Systems for Homeland Security Applications presents original and significant technical contributions from leaders of industry, government, and academia in the field of optical and photonic sensors, systems and devices for detection, identification, prevention, sensing, security, verification and anti-counterfeiting. The chapters have recent and technically significant results, ample illustrations, figures, and key references. This book is intended for engineers and scientists in the relevant fields, graduate students, industry managers, university professors, government managers, and policy makers. Advanced Sciences and Technologies for Security Applications focuses on research monographs in the areas of -Recognition and identification (including optical imaging, biometrics, authentication, verification, and smart surveillance systems) -Biological and chemical threat detection (including bios...

  19. Ultrafast transient grating radiation to optical image converter

    Science.gov (United States)

    Stewart, Richard E; Vernon, Stephen P; Steel, Paul T; Lowry, Mark E

    2014-11-04

    A high sensitivity transient grating ultrafast radiation to optical image converter is based on a fixed transmission grating adjacent to a semiconductor substrate. X-rays or optical radiation passing through the fixed transmission grating is thereby modulated and produces a small periodic variation of refractive index or transient grating in the semiconductor through carrier induced refractive index shifts. An optical or infrared probe beam tuned just below the semiconductor band gap is reflected off a high reflectivity mirror on the semiconductor so that it double passes therethrough and interacts with the radiation induced phase grating therein. A small portion of the optical beam is diffracted out of the probe beam by the radiation induced transient grating to become the converted signal that is imaged onto a detector.

  20. X-ray refraction-contrast computed tomography images using dark-field imaging optics

    International Nuclear Information System (INIS)

    If an x-ray beam containing internal information derived from sample soft tissue is incident upon a Laue-case analyzer, the beam will subsequently split into a forwardly diffracted beam and a separate diffracted beam. Using these beams acquired simultaneously, a refraction-contrast computed tomography (CT) imaging system for biomedical use with lower radiation dose can be easily realized, and has a high depicting capability on the soft tissues compared with conventional x-ray CT based on absorption contrast principles. In this paper, we propose an imaging system using dark-field imaging for CT measurement based on a tandem system of Bragg- and Laue-case crystals with two two-dimensional detectors, along with a data-processing method to extract information on refraction from the measured entangled intensities by use of rocking curve fitting with polynomial functions. Reconstructed images of soft tissues are presented and described.

  1. FIRST IMAGES FROM THE FOCUSING OPTICS X-RAY SOLAR IMAGER

    Energy Technology Data Exchange (ETDEWEB)

    Krucker, Säm; Glesener, Lindsay; Turin, Paul; McBride, Stephen; Glaser, David; Fermin, Jose; Lin, Robert [Space Sciences Laboratory, University of California at Berkeley, Berkeley, CA (United States); Christe, Steven [NASA Goddard Space Flight Center, Greenbelt, MD (United States); Ishikawa, Shin-nosuke [National Astronomical Observatory, Mitaka (Japan); Ramsey, Brian; Gubarev, Mikhail; Kilaru, Kiranmayee [NASA Marshall Space Flight Center, Huntsville, AL (United States); Takahashi, Tadayuki; Watanabe, Shin; Saito, Shinya [Institute of Space and Astronautical Science (ISAS)/JAXA, Sagamihara (Japan); Tajima, Hiroyasu [Solar-Terrestial Environment Laboratory, Nagoya University, Nagoya (Japan); Tanaka, Takaaki [Department of Physics, Kyoto University, Kyoto (Japan); White, Stephen [Air Force Research Laboratory, Albuquerque, NM (United States)

    2014-10-01

    The Focusing Optics X-ray Solar Imager (FOXSI) sounding rocket payload flew for the first time on 2012 November 2, producing the first focused images of the Sun above 5 keV. To enable hard X-ray (HXR) imaging spectroscopy via direct focusing, FOXSI makes use of grazing-incidence replicated optics combined with fine-pitch solid-state detectors. On its first flight, FOXSI observed several targets that included active regions, the quiet Sun, and a GOES-class B2.7 microflare. This Letter provides an introduction to the FOXSI instrument and presents its first solar image. These data demonstrate the superiority in sensitivity and dynamic range that is achievable with a direct HXR imager with respect to previous, indirect imaging methods, and illustrate the technological readiness for a spaceborne mission to observe HXRs from solar flares via direct focusing optics.

  2. Synthesis of Disparate Optical Imaging Data for Space Domain Awareness

    CERN Document Server

    Schneider, Michael D

    2016-01-01

    We present a Bayesian algorithm to combine optical imaging of unresolved objects from distinct epochs and observation platforms for orbit determination and tracking. By propagating the non-Gaussian uncertainties we are able to optimally combine imaging of arbitrary signal-to-noise ratios, allowing the integration of data from low-cost sensors. Our Bayesian approach to image characterization also allows large compression of imaging data without loss of statistical information. With a computationally efficient algorithm to combine multiple observation epochs and multiple telescopes, we show statistically optimal orbit inferences.

  3. Optical imaging of absorption and distribution of RITC-SiO2 nanoparticles after oral administration

    Directory of Open Access Journals (Sweden)

    Lee CM

    2014-12-01

    Full Text Available Chang-Moon Lee,1 Tai Kyoung Lee,2–5 Dae-Ik Kim,1,6 Yu-Ri Kim,7 Meyoung-Kon Kim,7 Hwan-Jeong Jeong,2–5 Myung-Hee Sohn,2–5 Seok Tae Lim2–5 1Department of Biomedical Engineering, Chonnam National University, Yeosu, Jeollanam-Do, Republic of Korea; 2Department of Nuclear Medicine, Chonbuk National University Medical School and Hospital, Jeonju, Jeollabuk-Do, Republic of Korea; 3Cyclotron Research Center, Chonbuk National University Medical School and Hospital, Jeonju, Jeollabuk-Do, Republic of Korea; 4Biomedical Research Institute, Chonbuk National University Medical School and Hospital, Jeonju, Jeollabuk-Do, Republic of Korea; 5Molecular Imaging and Therapeutic Medicine Research Center, Chonbuk National University Medical School and Hospital, Jeonju, Jeollabuk-Do, Republic of Korea; 6School of Electrical, Electronic Communication, and Computer Engineering, Chonnam National University, Yeosu, Jeollanam-Do, Republic of Korea; 7Department of Biochemistry and Molecular Biology, Korea University Medical School and College, Seounbuk-Gu, Seoul, Republic of Korea Purpose: In this study, we investigated the absorption and distribution of rhodamine B isothiocyanate (RITC-incorporated silica oxide nanoparticles(SiNPs (RITC-SiNPs after oral exposure, by conducting optical imaging, with a focus on tracking the movement of RITC-SiNPs of different particle size and surface charge. Methods: RITC-SiNPs (20 or 100 nm; positively or negatively charged were used to avoid the dissociation of a fluorescent dye from nanoparticles via spontaneous or enzyme-catalyzed reactions in vivo. The changes in the nanoparticle sizes and shapes were investigated in an HCl solution for 6 hours. RITC-SiNPs were orally administered to healthy nude mice at a dose of 100 mg/kg. Optical imaging studies were performed at 2, 4, and 6 hours after oral administration. The mice were sacrificed at 2, 4, 6, and 10 hours post-administration, and ex vivo imaging studies were performed

  4. Magnetic resonance imaging in Malawi: contributions to clinical care, medical education and biomedical research.

    Science.gov (United States)

    Potchen, M J; Kampondeni, S; Birbeck, G L; Hammond, C A; Gonani, A; Phiri, K S; Seydel, K B; Taylors, T E

    2011-06-01

    Advanced medical imaging technologies are generally unavailable in low income, tropical settings despite the reality that neurologic disorders are disproportionately common in such environments. Through a series of donations as well as extramural research funding support, an MRI facility opened in Blantyre, Malawi in July 2008. Resulting opportunities for studying common tropical disorders, such as malaria and schistosomiasis, in vivo are promising. The subsequent improvements in local patient care were expected and exceptional and include major revisions in basic care protocols that may eventually impact care protocols at facilities in the region that do not have recourse to MRI. In addition, advanced neuroimaging technology has energized the medical education system, possibly slowing the brain drain. Advanced technologies, though potentially associated with significant fiscal opportunity costs, may bring unexpected and extensive benefits to the healthcare and medical education systems involved.

  5. A purification system for 64Cu produced by a biomedical cyclotron for antibody PET imaging

    International Nuclear Information System (INIS)

    Ion exchange is a simple and efficient method for separating no-carrier-added 64Cu from an irradiated Ni target. We developed a semi-automated two-round 64Cu separation system equipped with a strong-base anion exchange resin column. We first verified the efficiency of the system using a non-radioactive substitute consisting of 25 mg of Ni and 127 ng of Cu, and confirmed that Cu was completely eluted at the second round of the separation step. After the bombardment, separation of 64Cu from the Ni target was achieved with high radiochemical purity. 64Cu produced and separated in this study had an extremely low level of Ni impurity. It could be used for labeling monoclonal antibodies for antibody positron emission tomography imaging and synthesizing radiopharmaceuticals. (author)

  6. Optical image acquisition system for colony analysis

    Science.gov (United States)

    Wang, Weixing; Jin, Wenbiao

    2006-02-01

    For counting of both colonies and plaques, there is a large number of applications including food, dairy, beverages, hygiene, environmental monitoring, water, toxicology, sterility testing, AMES testing, pharmaceuticals, paints, sterile fluids and fungal contamination. Recently, many researchers and developers have made efforts for this kind of systems. By investigation, some existing systems have some problems since they belong to a new technology product. One of the main problems is image acquisition. In order to acquire colony images with good quality, an illumination box was constructed as: the box includes front lightning and back lightning, which can be selected by users based on properties of colony dishes. With the illumination box, lightning can be uniform; colony dish can be put in the same place every time, which make image processing easy. A digital camera in the top of the box connected to a PC computer with a USB cable, all the camera functions are controlled by the computer.

  7. Surface engineering of graphene-based nanomaterials for biomedical applications.

    Science.gov (United States)

    Shi, Sixiang; Chen, Feng; Ehlerding, Emily B; Cai, Weibo

    2014-09-17

    Graphene-based nanomaterials have attracted tremendous interest over the past decade due to their unique electronic, optical, mechanical, and chemical properties. However, the biomedical applications of these intriguing nanomaterials are still limited due to their suboptimal solubility/biocompatibility, potential toxicity, and difficulties in achieving active tumor targeting, just to name a few. In this Topical Review, we will discuss in detail the important role of surface engineering (i.e., bioconjugation) in improving the in vitro/in vivo stability and enriching the functionality of graphene-based nanomaterials, which can enable single/multimodality imaging (e.g., optical imaging, positron emission tomography, magnetic resonance imaging) and therapy (e.g., photothermal therapy, photodynamic therapy, and drug/gene delivery) of cancer. Current challenges and future research directions are also discussed and we believe that graphene-based nanomaterials are attractive nanoplatforms for a broad array of future biomedical applications.

  8. Neutron imaging for inertial confinement fusion and molecular optic imaging

    International Nuclear Information System (INIS)

    Scientific domains that require imaging of micrometric/nano-metric objects are dramatically increasing (Plasma Physics, Astrophysics, Biotechnology, Earth Sciences...). Difficulties encountered in imaging smaller and smaller objects make this research area more and more challenging and in constant evolution. The two scientific domains, through which this study has been led, are the neutron imaging in the context of the inertial confinement fusion and the fluorescence molecular imaging. Work presented in this thesis has two main objectives. The first one is to describe the instrumentation characteristics that require such imagery and, relatively to the scientific domains considered, identify parameters likely to optimize the imaging system accuracy. The second one is to present the developed data analysis and reconstruction methods able to provide spatial resolution adapted to the size of the observed object. Similarities of numerical algorithms used in these two scientific domains, which goals are quiet different, show how micrometric/nano-metric object imaging is a research area at the border of a large number of scientific disciplines. (author)

  9. A True Multi-modality Approach for High Resolution Optical Imaging: Photo-Magnetic Imaging

    OpenAIRE

    Luk, Alex T.; Ha, Seunghoon; Nouizi, Farouk; Thayer, David; Lin, Yuting; Gulsen, Gultekin

    2014-01-01

    Multi-modality imaging leverages the competitive advantage of different imaging systems to improve the overall resolution and quantitative accuracy. Our new technique, Photo-Magnetic Imaging (PMI) is one of these true multi-modality imaging approaches, which can provide quantitative optical absorption map at MRI spatial resolution. PMI uses laser light to illuminate tissue and elevate its temperature while utilizing MR thermometry to measure the laser-induced temperature variation with high s...

  10. Virtual Averaging Making Nonframe-Averaged Optical Coherence Tomography Images Comparable to Frame-Averaged Images

    OpenAIRE

    Chen, Chieh-Li; Ishikawa, Hiroshi; Wollstein, Gadi; Bilonick, Richard A.; Kagemann, Larry; Schuman, Joel S.

    2016-01-01

    Purpose Developing a novel image enhancement method so that nonframe-averaged optical coherence tomography (OCT) images become comparable to active eye-tracking frame-averaged OCT images. Methods Twenty-one eyes of 21 healthy volunteers were scanned with noneye-tracking nonframe-averaged OCT device and active eye-tracking frame-averaged OCT device. Virtual averaging was applied to nonframe-averaged images with voxel resampling and adding amplitude deviation with 15-time repetitions. Signal-to...

  11. Alignment of microcircuit chips using optically smeared images.

    Science.gov (United States)

    Lewis, R W

    1979-02-01

    An optical method for determining the position of microcircuit chips for wirebonding or electrical testing stations was evaluated. Optically smearing the chip image in one direction with a cylindrical lens produces a convenient means for determining both chip angular orientation and position. Digitized images from a linear photodiode array camera were analyzed. The results show that a class of microcircuit chips with medium scale integration can be aligned in angle and position to a higher accuracy than required for wirebonding and electrical testing stations. PMID:20208714

  12. Transfection and imaging of diamond nanocrystals as scattering optical labels

    International Nuclear Information System (INIS)

    We report on the first demonstration of nanodiamond (ND) as a scattering optical label in a biological environment. NDs were efficiently transfected into cells using cationic liposomes, and imaged using differential interference and Hoffman modulation 'space' contrast microscopy techniques. We have shown that 55 nm NDs are biologically inert and produce a bright signal compared to the cell background. ND as a scattering label presents the possibility for extended biological imaging with relatively little thermal or biochemical perturbations due to the optical transparency and biologically inert nature of diamond

  13. Image segmentation by nonlinear filtering of optical Hough transform.

    Science.gov (United States)

    Fernández, Ariel; Flores, Jorge L; Alonso, Julia R; Ferrari, José A

    2016-05-01

    The identification and extraction (i.e., segmentation) of geometrical features is crucial in many tasks requiring image analysis. We present a method for the optical segmentation of features of interest from an edge enhanced image. The proposed method is based on the nonlinear filtering (implemented by the use of a spatial light modulator) of the generalized optical Hough transform and is capable of discriminating features by shape and by size. The robustness of the method against noise in the input, low contrast, or overlapping of geometrical features is assessed, and experimental validation of the working principle is presented. PMID:27140381

  14. Deep optical images of malin 1 reveal new features

    OpenAIRE

    Galaz, Gaspar; Milovic, Carlos; Suc, Vincent; Busta, Luis; Lizana, Guadalupe; Infante, Leopoldo; Royo Royo, Santiago

    2015-01-01

    We present Megacam deep optical images (g and r) of Malin 1 obtained with the 6.5m Magellan/Clay telescope, detecting structures down to ~ 28 B mag arcsec-2. In order to enhance galaxy features buried in the noise, we use a noise reduction filter based on the total generalized variation regularizator. This method allows us to detect and resolve very faint morphological features, including spiral arms, with a high visual contrast. For the first time, we can appreciate an optical image of Malin...

  15. Change detection in very high resolution multisensor optical images

    Science.gov (United States)

    Solano Correa, Yady T.; Bovolo, Francesca; Bruzzone, Lorenzo

    2014-10-01

    This work aims at developing an approach to the detection of changes in multisensor multitemporal VHR optical images. The main steps of the proposed method are: i) multisensor data homogenization; and ii) change detection in multisensor multitemporal VHR optical images. The proposed approach takes advantage of: the conversion to physical quantities suggested by Pacifici et. al.1 , the framework for the design of systems for change detection in VHR images presented by Bruzzone and Bovolo2 and the framework for unsupervised change detection presented by Bovolo and Bruzzone3. Multisensor data homogenization is achieved during pre-processing by taking into account differences in both radiometric and geometric dimensions. Whereas change detection was approached by extracting proper features from multisensor images such that they result to be comparable (at a given level of abstraction) even if extracted from images acquired by different sensors. In order to illustrate the results, a data set made up of a QuickBird and a WorldView-2 images - acquired in 2006 and 2010 respectively - over an area located in the Trentino region of Italy were used. However, the proposed approach is thought to be exportable to multitemporal images coming from passive sensors other than the two mentioned above. The experimental results obtained on the QuickBird and WorlView-2 image pair are accurate. Thus opening to further experiments on multitemporal images acquired by other sensors.

  16. Optical fiber based imaging of bioengineered tissue construct

    Science.gov (United States)

    Sapoznik, Etai; Niu, Guoguang; Lu, Peng; Zhou, Yu; Xu, Yong; Soker, Shay

    2016-04-01

    Imaging cells and tissues through opaque and turbid media is challenging and presents a major barrier for monitoring maturation and remodeling of bioengineered tissues. The fiber optics based imaging system described here offers a new approach for fluorescent cell imaging. A micro imaging channel is embedded in a Polycaprolactone (PCL) electrospun scaffold designed for cell seeding, which allows us to use an optical fiber to locally deliver excitation laser close to the fluorescent cells. The emission is detected by an Electron Multiplying Charge Coupled Device (EMCCD) detector and image reconstruction of multiple excitation points is achieved with a working distance of several centimeters. The objective of this study is to assess the effects of system parameters on image reconstruction outcomes. Initial studies using fluorescent beads indicated that scaffold thickness had a small effect on image quality, whereas scaffold composition (collagen content), fluorophore spectra, and the reconstruction window size had a large effect. The results also suggest that a far-red fluorescent emission is preferential when using collagenous scaffolds with a thickness of up to 500 μm. Using these optimized parameters, we were able to image fluorescently labeled cells on a scaffold with a resolution of 15-20 μm, and have also measured muscle progenitor cell differentiation and scaffold surface coverage with endothelial cells. In the future, this imaging platform can be applied to other bioengineered tissues for non-invasive monitoring both in vitro and in vivo.

  17. The diffractive achromat full spectrum computational imaging with diffractive optics

    KAUST Repository

    Peng, Yifan

    2016-07-11

    Diffractive optical elements (DOEs) have recently drawn great attention in computational imaging because they can drastically reduce the size and weight of imaging devices compared to their refractive counterparts. However, the inherent strong dispersion is a tremendous obstacle that limits the use of DOEs in full spectrum imaging, causing unacceptable loss of color fidelity in the images. In particular, metamerism introduces a data dependency in the image blur, which has been neglected in computational imaging methods so far. We introduce both a diffractive achromat based on computational optimization, as well as a corresponding algorithm for correction of residual aberrations. Using this approach, we demonstrate high fidelity color diffractive-only imaging over the full visible spectrum. In the optical design, the height profile of a diffractive lens is optimized to balance the focusing contributions of different wavelengths for a specific focal length. The spectral point spread functions (PSFs) become nearly identical to each other, creating approximately spectrally invariant blur kernels. This property guarantees good color preservation in the captured image and facilitates the correction of residual aberrations in our fast two-step deconvolution without additional color priors. We demonstrate our design of diffractive achromat on a 0.5mm ultrathin substrate by photolithography techniques. Experimental results show that our achromatic diffractive lens produces high color fidelity and better image quality in the full visible spectrum. © 2016 ACM.

  18. Breast imaging technology: Probing physiology and molecular function using optical imaging - applications to breast cancer

    International Nuclear Information System (INIS)

    The present review addresses the capacity of optical imaging to resolve functional and molecular characteristics of breast cancer. We focus on recent developments in optical imaging that allow three-dimensional reconstruction of optical signatures in the human breast using diffuse optical tomography (DOT). These technologic advances allow the noninvasive, in vivo imaging and quantification of oxygenated and deoxygenated hemoglobin and of contrast agents that target the physiologic and molecular functions of tumors. Hence, malignancy differentiation can be based on a novel set of functional features that are complementary to current radiologic imaging methods. These features could enhance diagnostic accuracy, lower the current state-of-the-art detection limits, and play a vital role in therapeutic strategy and monitoring

  19. The Subaru Deep Field: The Optical Imaging Data

    CERN Document Server

    Kashikawa, N; Yasuda, N; Ajiki, M; Akiyama, M; Ando, H; Aoki, K; Doi, M; Fujita, S S; Furusawa, H; Hayashino, T; Iwamuro, F; Iye, M; Karoji, H; Kobayashi, N; Kodaira, K; Kodama, T; Komiyama, Yu; Matsuda, Y; Miyazaki, S; Mizumoto, Y; Morokuma, T; Motohara, K; Murayama, T; Nagao, T; Nariai, K; Ohta, K; Okamura, S; Ouchi, M; Sasaki, T; Sato, Y; Sekiguchi, K; Shioya, Y; Tamura, H; Taniguchi, Y; Umemura, M; Yamada, T; Yoshida, M

    2004-01-01

    The Subaru Deep Field (SDF) project is a program of Subaru Observatory to carry out a deep galaxy survey over a blank field as large as 34'x27'. The program consists of very deep multi-band optical imaging, near infrared imaging for smaller portions of the field and follow-up optical spectroscopy. Major scientific goals of the project are to construct large samples of Lyman-break galaxies at z~4-5 and Lyman alpha emitters at z~5.7 and 6.6, and to make detailed studies these very high-redshift galaxy populations. In this paper, we describe the optical imaging observations and data reduction, presenting mosaicked images and object catalogs in seven bandpasses.The optical imaging was made through five broad-band filters, B, V, R, i', z', and two narrow-band filters, NB816 (lambda_c=8150A) and NB921 (lambda_c=9196A) with almost 10 hours long integrations for each band. The limiting magnitudes measured at 3-sigma on a 2" aperture are B=28.45, V=27.74, R=27.80, i'=27.43, z'=26.62, NB816=26.63, and NB921=26.54 in th...

  20. Automated Localization of Optic Disc in Retinal Images

    Directory of Open Access Journals (Sweden)

    Deepali A.Godse

    2013-03-01

    Full Text Available An efficient detection of optic disc (OD in colour retinal images is a significant task in an automated retinal image analysis system. Most of the algorithms developed for OD detection are especially applicable to normal and healthy retinal images. It is a challenging task to detect OD in all types of retinal images, that is, normal, healthy images as well as abnormal, that is, images affected due to disease. This paper presents an automated system to locate an OD and its centre in all types of retinal images. The ensemble of steps based on different criteria produces more accurate results. The proposed algorithm gives excellent results and avoids false OD detection. The technique is developed and tested on standard databases provided for researchers on internet, Diaretdb0 (130 images, Diaretdb1 (89 images, Drive (40 images and local database (194 images. The local database images are collected from ophthalmic clinics. It is able to locate OD and its centre in 98.45% of all tested cases. The results achieved by different algorithms can be compared when algorithms are applied on same standard databases. This comparison is also discussed in this paper which shows that the proposed algorithm is more efficient.

  1. Closed-loop optical stabilization and digital image registration in adaptive optics scanning light ophthalmoscopy.

    Science.gov (United States)

    Yang, Qiang; Zhang, Jie; Nozato, Koji; Saito, Kenichi; Williams, David R; Roorda, Austin; Rossi, Ethan A

    2014-09-01

    Eye motion is a major impediment to the efficient acquisition of high resolution retinal images with the adaptive optics (AO) scanning light ophthalmoscope (AOSLO). Here we demonstrate a solution to this problem by implementing both optical stabilization and digital image registration in an AOSLO. We replaced the slow scanning mirror with a two-axis tip/tilt mirror for the dual functions of slow scanning and optical stabilization. Closed-loop optical stabilization reduced the amplitude of eye-movement related-image motion by a factor of 10-15. The residual RMS error after optical stabilization alone was on the order of the size of foveal cones: ~1.66-2.56 μm or ~0.34-0.53 arcmin with typical fixational eye motion for normal observers. The full implementation, with real-time digital image registration, corrected the residual eye motion after optical stabilization with an accuracy of ~0.20-0.25 μm or ~0.04-0.05 arcmin RMS, which to our knowledge is more accurate than any method previously reported.

  2. A Survey on Object Detection in Optical Remote Sensing Images

    OpenAIRE

    Cheng, Gong; Han, Junwei

    2016-01-01

    Object detection in optical remote sensing images, being a fundamental but challenging problem in the field of aerial and satellite image analysis, plays an important role for a wide range of applications and is receiving significant attention in recent years. While enormous methods exist, a deep review of the literature concerning generic object detection is still lacking. This paper aims to provide a review of the recent progress in this field. Different from several previously published su...

  3. Speckle reduction in optical coherence tomography imaging by affine-motion image registration

    Science.gov (United States)

    Alonso-Caneiro, David; Read, Scott A.; Collins, Michael J.

    2011-11-01

    Signal-degrading speckle is one factor that can reduce the quality of optical coherence tomography images. We demonstrate the use of a hierarchical model-based motion estimation processing scheme based on an affine-motion model to reduce speckle in optical coherence tomography imaging, by image registration and the averaging of multiple B-scans. The proposed technique is evaluated against other methods available in the literature. The results from a set of retinal images show the benefit of the proposed technique, which provides an improvement in signal-to-noise ratio of the square root of the number of averaged images, leading to clearer visual information in the averaged image. The benefits of the proposed technique are also explored in the case of ocular anterior segment imaging.

  4. Synergizing superresolution optical fluctuation imaging with single molecule localization microscopy

    CERN Document Server

    Schidorsky, Shachar; Razvag, Yair; Golan, Yonatan; Weiss, Shimon; Sherman, Eilon

    2016-01-01

    Single molecule localization microscopy (SMLM) techniques enable imaging biological samples well beyond the diffraction limit of light, but they vary significantly in their spatial and temporal resolutions. High-order statistical analysis of temporal fluctuations as in superresolution optical fluctuation imaging (SOFI) also enable imaging beyond diffraction limit, but usually at a lower resolution as compared to SMLM. Since the same data format is acquired for both methods, their algorithms can be applied to the same data set, and thus may be combined synergistically to improve overall imaging performance. Here, we find that SOFI converges much faster than SMLM, provides additive information to SMLM, and can efficiently reject background. We then show how SOFI-assisted SMLM imaging can improve SMLM image reconstruction by rejecting common sources of background, especially under low signal-to-background conditions. The performance of our approach was evaluated using a realistic simulation of fluorescence imagi...

  5. Spaceborne astronomy with electro-optical image sensors

    Science.gov (United States)

    Bradley, W. C.

    1977-01-01

    The Space Telescope, planned for orbiting in the early 1980s, is described, with emphasis on its electro-optical image sensing capability. Relative advantages of image tubes and solid state arrays as image detectors are summarized; image tube technology is well characterized, but preference may be given to a more versatile tandem solid state array consisting of one module with high silicon response covering most of the spectrum, and a second intensified array with ultraviolet sensitivity and low noise readout. The classical 'photoelectron noise limit' calculation is reviewed, and a detailed calculation of sensitivity limits adaptable to analysis of image tube or solid state array detectors is also given. In particular, characteristics of a filter to optimize the signal to noise ratio is determined. Typical sensitivity calculations for an image tube detector show that with an exposure of one orbital night (approximately 2000 seconds), 10% photometry may be done to a low limit of visual magnitude.

  6. Imaging Coronary Atherosclerosis and Vulnerable Plaques with Optical Coherence Tomography

    Science.gov (United States)

    Tearney, Guillermo J.; Jang, Ik-Kyung; Kashiwagi, Manubu; Bouma, Brett E.

    Intracoronary optical coherence tomography (OCT) is an invasive microscopic imaging technology that has been developed for the identification of vulnerable plaque. OCT acquires cross-sectional images of tissue reflectance and, since it may be implemented through an optical fiber probe, it is readily adaptable to coronary catheters for insertion into coronary arteries and circumferential imaging of arterial pathology. The first investigation of vascular optical coherence tomography ex vivo demonstrated the potential of this technique to identify arterial microstructure. Subsequent development of OCT technology enabled image acquisition at rates sufficient for intracoronary imaging in human patients. In this chapter, we review studies conducted with this technology at the Massachusetts General Hospital (MGH). Results from these studies show that a wide variety of microscopic features, including those associated with TCFAs, can be identified by OCT imaging both ex vivo and in living human patients. These findings suggest that this technology will play an important role in improving our understanding of coronary artery disease, guiding local therapy, and decreasing themortality of AMI.

  7. Functional Doppler optical coherence tomography for cortical blood flow imaging

    Science.gov (United States)

    Yu, Lingfeng; Liu, Gangjun; Nguyen, Elaine; Choi, Bernard; Chen, Zhongping

    2010-02-01

    Optical methods have been widely used in basic neuroscience research to study the cerebral blood flow dynamics in order to overcome the low spatial resolution associated with magnetic resonance imaging and positron emission tomography. Although laser Doppler imaging and laser speckle imaging can map out en face cortical hemodynamics and columns, depth resolution is not available. Two-photon microscopy has been used for mapping cortical activity. However, flow measurement requires fluorescent dye injection, which can be problematic. The noninvasive and high resolution tomographic capabilities of optical coherence tomography make it a promising technique for mapping depth resolved cortical blood flow. Here, we present a functional Doppler optical coherence tomography (OCT) imaging modality for quantitative evaluation of cortical blood flow in a mouse model. Fast, repeated, Doppler OCT scans across a vessel of interest were performed to record flow dynamic information with a high temporal resolution of the cardiac cycles. Spectral Doppler analysis of continuous Doppler images demonstrates how the velocity components and longitudinally projected flow-volume-rate change over time, thereby providing complementary temporal flow information to the spatially distributed flow information of Doppler OCT. The proposed functional Doppler OCT imaging modality can be used to diagnose vessel stenosis/blockage or monitor blood flow changes due to pharmacological agents/neuronal activities. Non-invasive in-vivo mice experiments were performed to verify the capabilities of function Doppler OCT.

  8. Three-dimensional force microscope: A nanometric optical tracking and magnetic manipulation system for the biomedical sciences

    Science.gov (United States)

    Fisher, J. K.; Cummings, J. R.; Desai, K. V.; Vicci, L.; Wilde, B.; Keller, K.; Weigle, C.; Bishop, G.; Taylor, R. M.; Davis, C. W.; Boucher, R. C.; O'Brien, E. Timothy; Superfine, R.

    2005-05-01

    We report here the development of a three-dimensional (3D) magnetic force microscope for applying forces to and measuring responses of biological systems and materials. This instrument combines a conventional optical microscope with a free-floating or specifically bound magnetic bead used as a mechanical probe. Forces can be applied by the bead to microscopic structures of interest (specimens), while the reaction displacement of the bead is measured. This enables 3D mechanical manipulations and measurements to be performed on specimens in fluids. Force is generated by the magnetically permeable bead in reaction to fields produced by external electromagnets. The displacement is measured by interferometry using forward light scattered by the bead from a focused laser beam. The far-field interference pattern is imaged on a quadrant photodetector from which the 3D displacement can be computed over a limited range about the focal point. The bead and specimen are mounted on a 3D translation stage and feedback techniques are used to keep the bead within this limited range. We demonstrate the system with application to beads attached to cilia in human lung cell cultures.

  9. Glaucoma severity affects diffusion tensor imaging (DTI) parameters of the optic nerve and optic radiation

    International Nuclear Information System (INIS)

    Objectives: To evaluate whether MR diffusion tensor imaging (DTI) of the optic nerve and optic radiation in glaucoma patients provides parameters to discriminate between mild and severe glaucoma and to determine whether DTI derived indices correlate with retinal nerve fibre layer (RNFL) thickness. Methods: 3-Tesla DTI was performed on 90 subjects (30 normal, 30 mild glaucoma and 30 severe glaucoma subjects) and the FA and MD of the optic nerve and optic radiation were measured. The categorisation into mild and severe glaucoma was done using the Hodapp–Parrish–Anderson (HPA) classification. RNFL thickness was also assessed on all subjects using OCT. Receiver operating characteristic (ROC) analysis and Spearman's correlation coefficient was carried out. Results: FA and MD values in the optic nerve and optic radiation decreased and increased respectively as the disease progressed. FA at the optic nerve had the highest sensitivity (87%) and specificity (80%). FA values displayed the strongest correlation with RNFL thickness in the optic nerve (r = 0.684, p ≤ 0.001) while MD at the optic radiation showed the weakest correlation with RNFL thickness (r = −0.360, p ≤ 0.001). Conclusions: The high sensitivity and specificity of DTI-derived FA values in the optic nerve and the strong correlation between DTI-FA and RNFL thickness suggest that these parameters could serve as indicators of disease severity

  10. Glaucoma severity affects diffusion tensor imaging (DTI) parameters of the optic nerve and optic radiation

    Energy Technology Data Exchange (ETDEWEB)

    Sidek, S. [Department of Biomedical Imaging, University Malaya, Research Imaging Centre, Faculty of Medicine, University Malaya (Malaysia); Medical Imaging Unit, Faculty of Medicine, Universiti Teknologi MARA, Selangor (Malaysia); Ramli, N. [Department of Biomedical Imaging, University Malaya, Research Imaging Centre, Faculty of Medicine, University Malaya (Malaysia); Rahmat, K., E-mail: katt_xr2000@yahoo.com [Department of Biomedical Imaging, University Malaya, Research Imaging Centre, Faculty of Medicine, University Malaya (Malaysia); Ramli, N.M.; Abdulrahman, F. [Department of Ophthalmology, Faculty of Medicine, University Malaya, Kuala Lumpur (Malaysia); Tan, L.K. [Department of Biomedical Imaging, University Malaya, Research Imaging Centre, Faculty of Medicine, University Malaya (Malaysia)

    2014-08-15

    Objectives: To evaluate whether MR diffusion tensor imaging (DTI) of the optic nerve and optic radiation in glaucoma patients provides parameters to discriminate between mild and severe glaucoma and to determine whether DTI derived indices correlate with retinal nerve fibre layer (RNFL) thickness. Methods: 3-Tesla DTI was performed on 90 subjects (30 normal, 30 mild glaucoma and 30 severe glaucoma subjects) and the FA and MD of the optic nerve and optic radiation were measured. The categorisation into mild and severe glaucoma was done using the Hodapp–Parrish–Anderson (HPA) classification. RNFL thickness was also assessed on all subjects using OCT. Receiver operating characteristic (ROC) analysis and Spearman's correlation coefficient was carried out. Results: FA and MD values in the optic nerve and optic radiation decreased and increased respectively as the disease progressed. FA at the optic nerve had the highest sensitivity (87%) and specificity (80%). FA values displayed the strongest correlation with RNFL thickness in the optic nerve (r = 0.684, p ≤ 0.001) while MD at the optic radiation showed the weakest correlation with RNFL thickness (r = −0.360, p ≤ 0.001). Conclusions: The high sensitivity and specificity of DTI-derived FA values in the optic nerve and the strong correlation between DTI-FA and RNFL thickness suggest that these parameters could serve as indicators of disease severity.

  11. Flexibly combined optical microangiography and dual-wavelength laser speckle system for comprehensive imaging of hemodynamic and metabolic responses

    Science.gov (United States)

    Shi, Lei; Qin, Jia; An, Lin; Wang, Ruikang K.

    2014-03-01

    We have proposed and developed a multi-modal non-invasive biomedical optical imager. It was combined from the subsystems of optical microangiography and dual-wavelength laser speckle contrast imaging. The system was designed to maintain the performances of both subsystems. It was capable of simultaneously imaging the hemodynamic and metabolic responses in tissue environment in vivo. To achieve such requirements, we utilized unique optical setup, such as paired dichroic mirrors to compensate dispersion, additional relay lens to increase working distance and translational sample probe to freely select imaging area and focal plane. The multi-functionality of the system was demonstrated in an investigation of hemodynamic and metabolic responses on an acute wound healing model in mouse pinna in vivo. The microvasculature, blood flow and hemoglobin concentration from millimeter down to capillary level were comprehensively visualized. The captured instantaneous responses to wound onset differed greatly between localized areas; after that blood flow had a rebalance tendency, and hemoglobin concentration dynamically recovered to baseline situation.

  12. Optical system design of the snapshot imaging spectrometerusing image replication based on Wollaston prism

    Science.gov (United States)

    Pei, Lin-lin; Min, Huang; Lv, Qun-bo; Wang, Jian-wei; Li, Wei-yan

    2015-01-01

    Imaging spectral is a novel detection approach which simultaneously acquires two-dimensional visual picture and one-dimensional spectral information.The imaging spectrometer not only provides abundant data for aeronautics and astronautics remote sensing, but also offers promising applications on biomedical imaging, conservation and identification of art works,surveillance of food safety,prevention and control of plant diseases and elimination of pests,and so forth. In this paper, the snapshot imaging spectrometer using image replication based on Wollaston prisms is designed. This system includes the telescope objective, the collimator lens, the wave plates, Wollaston prisms, and the imaging lens.The imaging spectrometer system based on multi-configuration can obtain a high diffraction efficiency. Every configuration provide a kind of wave. The 16 configurations are in one mechanical structure. The system's MTF at 56 line pairs is better than 0.75. The RMS of the spots are all in one pixel.The imaging spectrometer can obtain perfect data.

  13. Ex vivo imaging of human thyroid pathology using integrated optical coherence tomography and optical coherence microscopy

    Science.gov (United States)

    Zhou, Chao; Wang, Yihong; Aguirre, Aaron D.; Tsai, Tsung-Han; Cohen, David W.; Connolly, James L.; Fujimoto, James G.

    2010-01-01

    We evaluate the feasibility of optical coherence tomography (OCT) and optical coherence microscopy (OCM) for imaging of benign and malignant thyroid lesions ex vivo using intrinsic optical contrast. 34 thyroid gland specimens are imaged from 17 patients, covering a spectrum of pathology ranging from normal thyroid to benign disease/neoplasms (multinodular colloid goiter, Hashimoto's thyroiditis, and follicular adenoma) and malignant thyroid tumors (papillary carcinoma and medullary carcinoma). Imaging is performed using an integrated OCT and OCM system, with <4 μm axial resolution (OCT and OCM), and 14 μm (OCT) and <2 μm (OCM) transverse resolution. The system allows seamless switching between low and high magnifications in a way similar to traditional microscopy. Good correspondence is observed between optical images and histological sections. Characteristic features that suggest malignant lesions, such as complex papillary architecture, microfollicules, psammomatous calcifications, or replacement of normal follicular architecture with sheets/nests of tumor cells, can be identified from OCT and OCM images and are clearly differentiable from normal or benign thyroid tissues. With further development of needle-based imaging probes, OCT and OCM could be promising techniques to use for the screening of thyroid nodules and to improve the diagnostic specificity of fine needle aspiration evaluation.

  14. Endocular ophthalmoscope: miniaturization and optical imaging quality

    Science.gov (United States)

    Rol, Pascal O.; Beck, Dominik; Niederer, Peter F.

    1991-06-01

    Endoscopy is a novel method of observation in ocular surgery. It allows a direct viewing of certain internal structures of the eye which can not be seen through conventional slit lamp/microscope arrangements like the back side of the iris, the posterior chamber or the fixation area of an IOL. In addition such an instrument is useful in exploratory orbital surgery because it allows for examination of the scleral wall, the 6 motor muscles and the optic nerve sheet with minimal trauma to the eye. An endoscopic system can therefore be helpful to check regions which can not be reached easily during surgery, such as the ciliary body or the pars plana. When a transparent structure of the eye becomes turbid, e.g., a hazy cornea, observation is impaired and endoscopy could also provide a solution though it is an invasive method.

  15. Anatomy for Biomedical Engineers

    Science.gov (United States)

    Carmichael, Stephen W.; Robb, Richard A.

    2008-01-01

    There is a perceived need for anatomy instruction for graduate students enrolled in a biomedical engineering program. This appeared especially important for students interested in and using medical images. These students typically did not have a strong background in biology. The authors arranged for students to dissect regions of the body that…

  16. Magnetic resonance imaging in optic nerve lesions with multiple sclerosis

    International Nuclear Information System (INIS)

    Magnetic resonance imaging (MRI) of the optic nerve was performed in 10 patients with multiple sclerosis (MS) using short inversion time inversion recovery (STIR) pulse sequences, and the results were compared with the visual evoked potentials (VEP). The 10 patients had optic neuritis in the chronic or remitting phase together with additional symptoms or signs allowing a diagnosis of clinically definite or probable MS. Sixteen optic nerves were clinically affected and 4 were unaffected. MRI was performed using a 0.5 tesla supeconducting unit, and multiple continuous 5 mm coronal and axial STIR images were obtained. A lesion was judged to be present if a focal or diffuse area of increased signal intensity was detectd in the optic nerve. In VEP, a delay in peak latency or no P 100 component was judged to be abnormal. With regard to the clinically affected optic nerves, MRI revealed a region of increased signal intensity in 14/16 (88%) and the VEP was abnormal in 16/16 (100%). In the clinically unaffected optic nerves, MRI revealed an increased signal intensity in 2/4 (50%). One of these nerves had an abnormal VEP and the other had a VEP latency at the upper limit of normal. The VEP was abnormal in 1/4 (25%). In the clinically affected optic nerves, the degree of loss of visual acuity was not associated with the longitudinal extent of the lesions shown by MRI. The mean length was 17.5 mm in optic nerves with a slight disturbance of visual acuity and 15.0 mm in nerves with severe visual loss. MRI using STIR pulse sequences was found to be almost as sensitive as VEP in detecting both clinically affected and unaffected optic nerve lesions in patients with MS, and was useful in visualizing the location or size of the lesions. (author)

  17. Visible-Light Tomography Using an Optical Imaging-System

    NARCIS (Netherlands)

    Ingesson, L. C.; Koning, J. J.; Donne, A. J. H.; D.C. Schram,

    1992-01-01

    A system for tomography in the wavelength range 200-1 100 nm has been designed for the Rijnhuizen Tokamak Project (RTP). The plasma is viewed from five directions in one poloidal plane with a total of 80 detectors. An optical imaging system consisting of two spherical mirrors for each viewing direct

  18. Gamma-Ray Focusing Optics for Small Animal Imaging

    Science.gov (United States)

    Pivovaroff, M. J.; Barber, W. C.; Craig, W. W.; Hasegawa, B. H.; Ramsey, B. D.; Taylor, C.

    2004-01-01

    There is a well-established need for high-resolution radionuclide imaging techniques that provide non-invasive measurement of physiological function in small animals. We, therefore, have begun developing a small animal radionuclide imaging system using grazing incidence mirrors to focus low-energy gamma-rays emitted by I-125, and other radionuclides. Our initial prototype optic, fabricated from thermally-formed glass, demonstrated a resolution of 1500 microns, consistent with the performance predicted by detailed simulations. More recently, we have begun constructing mirrors using a replication technique that reduces low spatial frequency errors in the mirror surface, greatly improving the resolution. Each technique offers particular advantages: e.g., multilayer coatings are easily deposited on glass, while superior resolution is possible with replicated optics. Scaling the results from our prototype optics, which only have a few nested shells, to system where the lens has a full complement of several tens of nested shells, a sensitivity of approx. 1 cps/micro Ci is possible, with the exact number dependent on system magnification and radionuclide species. (Higher levels of efficiency can be obtained with multi-optic imaging systems.) The gamma-ray lens will achieve a resolution as good as 100 microns, independent of the final sensitivity. The combination of high spatial resolution and modest sensitivity will enable in vivo single photon emission imaging studies in small animals.

  19. Flow Velocity Measurement by Image Processing of Optically Activated Tracers

    OpenAIRE

    Gharib, M.; Hernan, M. A.; Yavrouian, A. H.; Sarohia, V.

    1985-01-01

    A computerized flow visualization technique capable of quantifying the flow field automatically has been developed. This technique uses afterglowing effect of optically activated phosphorescent particles to retrieve vectorial information on each trace. By using this information, in conjunction with computer image processing, the flow field of a free surface transient vortex was investigated.

  20. The Phoenix Deep Survey: Optical and near infrared imaging catalogs

    CERN Document Server

    Sullivan, M; Afonso, J; Georgakakis, A; Chan, B; Cram, L; Mobasher, B; Almeida, C; Sullivan, Mark; Hopkins, Andrew; Afonso, Jose; Georgakakis, Antonis; Chan, Ben; Cram, Lawrence; Mobasher, Bahram; Almeida, Cesario

    2004-01-01

    The Phoenix Deep Survey is a multi-wavelength galaxy survey based on deep 1.4 GHz radio imaging (Hopkins et al., 2003). The primary goal of this survey is to investigate the properties of star formation in galaxies and to trace the evolution in those properties to a redshift z=1, covering a significant fraction of the age of the Universe. By compiling a sample of star-forming galaxies based on selection at radio wavelengths we eliminate possible biases due to dust obscuration, a significant issue when selecting objects at optical and ultraviolet wavelengths. In this paper, we present the catalogs and results of deep optical (UBVRI) and near-infrared (Ks) imaging of the deepest region of the existing decimetric radio imaging. The observations and data-processing are summarised and the construction of the optical source catalogs described, together with the details of the identification of candidate optical counterparts to the radio catalogs. Based on our UBVRIKs imaging, photometric redshift estimates for the ...