WorldWideScience

Sample records for biomedical image archive

  1. Archives: Journal of Medical and Biomedical Sciences

    African Journals Online (AJOL)

    Items 1 - 20 of 20 ... Archives: Journal of Medical and Biomedical Sciences. Journal Home > Archives: Journal of Medical and Biomedical Sciences. Log in or Register to get access to full text downloads.

  2. Archives: Journal of Medicine and Biomedical Research

    African Journals Online (AJOL)

    Items 1 - 19 of 19 ... Archives: Journal of Medicine and Biomedical Research. Journal Home > Archives: Journal of Medicine and Biomedical Research. Log in or Register to get access to full text downloads.

  3. A novel method for efficient archiving and retrieval of biomedical images using MPEG-7

    Science.gov (United States)

    Meyer, Joerg; Pahwa, Ash

    2004-10-01

    Digital archiving and efficient retrieval of radiological scans have become critical steps in contemporary medical diagnostics. Since more and more images and image sequences (single scans or video) from various modalities (CT/MRI/PET/digital X-ray) are now available in digital formats (e.g., DICOM-3), hospitals and radiology clinics need to implement efficient protocols capable of managing the enormous amounts of data generated daily in a typical clinical routine. We present a method that appears to be a viable way to eliminate the tedious step of manually annotating image and video material for database indexing. MPEG-7 is a new framework that standardizes the way images are characterized in terms of color, shape, and other abstract, content-related criteria. A set of standardized descriptors that are automatically generated from an image is used to compare an image to other images in a database, and to compute the distance between two images for a given application domain. Text-based database queries can be replaced with image-based queries using MPEG-7. Consequently, image queries can be conducted without any prior knowledge of the keys that were used as indices in the database. Since the decoding and matching steps are not part of the MPEG-7 standard, this method also enables searches that were not planned by the time the keys were generated.

  4. Archives of Medical and Biomedical Research

    African Journals Online (AJOL)

    Archives of Medical and Biomedical Research is the official journal of the International Association of Medical and Biomedical Researchers (IAMBR) and the Society for Free Radical Research Africa (SFRR-Africa). It is an internationally peer reviewed, open access and multidisciplinary journal aimed at publishing original ...

  5. Archives: International Journal of Medicine and Biomedical Research

    African Journals Online (AJOL)

    Items 1 - 15 of 15 ... Archives: International Journal of Medicine and Biomedical Research. Journal Home > Archives: International Journal of Medicine and Biomedical Research. Log in or Register to get access to full text downloads.

  6. Biomedical signals, imaging, and informatics

    CERN Document Server

    Bronzino, Joseph D

    2014-01-01

    Known as the bible of biomedical engineering, The Biomedical Engineering Handbook, Fourth Edition, sets the standard against which all other references of this nature are measured. As such, it has served as a major resource for both skilled professionals and novices to biomedical engineering.Biomedical Signals, Imaging, and Informatics, the third volume of the handbook, presents material from respected scientists with diverse backgrounds in biosignal processing, medical imaging, infrared imaging, and medical informatics.More than three dozen specific topics are examined, including biomedical s

  7. Mariner 10 Image Archive

    Data.gov (United States)

    National Aeronautics and Space Administration — The Mariner 10 Image Archive includes tools to view shaded relief maps of the surface of Mercury, a 3D globe, and all images acquired by NASA's Mariner 10 mission.

  8. Molecular Biomedical Imaging Laboratory (MBIL)

    Data.gov (United States)

    Federal Laboratory Consortium — The Molecular Biomedical Imaging Laboratory (MBIL) is adjacent-a nd has access-to the Department of Radiology and Imaging Sciences clinical imaging facilities. MBIL...

  9. Computational intelligence in biomedical imaging

    CERN Document Server

    2014-01-01

    This book provides a comprehensive overview of the state-of-the-art computational intelligence research and technologies in biomedical images with emphasis on biomedical decision making. Biomedical imaging offers useful information on patients’ medical conditions and clues to causes of their symptoms and diseases. Biomedical images, however, provide a large number of images which physicians must interpret. Therefore, computer aids are demanded and become indispensable in physicians’ decision making. This book discusses major technical advancements and research findings in the field of computational intelligence in biomedical imaging, for example, computational intelligence in computer-aided diagnosis for breast cancer, prostate cancer, and brain disease, in lung function analysis, and in radiation therapy. The book examines technologies and studies that have reached the practical level, and those technologies that are becoming available in clinical practices in hospitals rapidly such as computational inte...

  10. IEEE International Symposium on Biomedical Imaging.

    Science.gov (United States)

    2017-01-01

    The IEEE International Symposium on Biomedical Imaging (ISBI) is a scientific conference dedicated to mathematical, algorithmic, and computational aspects of biological and biomedical imaging, across all scales of observation. It fosters knowledge transfer among different imaging communities and contributes to an integrative approach to biomedical imaging. ISBI is a joint initiative from the IEEE Signal Processing Society (SPS) and the IEEE Engineering in Medicine and Biology Society (EMBS). The 2018 meeting will include tutorials, and a scientific program composed of plenary talks, invited special sessions, challenges, as well as oral and poster presentations of peer-reviewed papers. High-quality papers are requested containing original contributions to the topics of interest including image formation and reconstruction, computational and statistical image processing and analysis, dynamic imaging, visualization, image quality assessment, and physical, biological, and statistical modeling. Accepted 4-page regular papers will be published in the symposium proceedings published by IEEE and included in IEEE Xplore. To encourage attendance by a broader audience of imaging scientists and offer additional presentation opportunities, ISBI 2018 will continue to have a second track featuring posters selected from 1-page abstract submissions without subsequent archival publication.

  11. Advanced biomedical image analysis

    CERN Document Server

    Haidekker, Mark A

    2010-01-01

    "This book covers the four major areas of image processing: Image enhancement and restoration, image segmentation, image quantification and classification, and image visualization. Image registration, storage, and compression are also covered. The text focuses on recently developed image processing and analysis operators and covers topical research"--Provided by publisher.

  12. Biomedical Imaging Principles and Applications

    CERN Document Server

    Salzer, Reiner

    2012-01-01

    This book presents and describes imaging technologies that can be used to study chemical processes and structural interactions in dynamic systems, principally in biomedical systems. The imaging technologies, largely biomedical imaging technologies such as MRT, Fluorescence mapping, raman mapping, nanoESCA, and CARS microscopy, have been selected according to their application range and to the chemical information content of their data. These technologies allow for the analysis and evaluation of delicate biological samples, which must not be disturbed during the profess. Ultimately, this may me

  13. Advancing biomedical imaging.

    Science.gov (United States)

    Weissleder, Ralph; Nahrendorf, Matthias

    2015-11-24

    Imaging reveals complex structures and dynamic interactive processes, located deep inside the body, that are otherwise difficult to decipher. Numerous imaging modalities harness every last inch of the energy spectrum. Clinical modalities include magnetic resonance imaging (MRI), X-ray computed tomography (CT), ultrasound, and light-based methods [endoscopy and optical coherence tomography (OCT)]. Research modalities include various light microscopy techniques (confocal, multiphoton, total internal reflection, superresolution fluorescence microscopy), electron microscopy, mass spectrometry imaging, fluorescence tomography, bioluminescence, variations of OCT, and optoacoustic imaging, among a few others. Although clinical imaging and research microscopy are often isolated from one another, we argue that their combination and integration is not only informative but also essential to discovering new biology and interpreting clinical datasets in which signals invariably originate from hundreds to thousands of cells per voxel.

  14. Mathematical modeling in biomedical imaging

    CERN Document Server

    2009-01-01

    This volume gives an introduction to a fascinating research area to applied mathematicians. It is devoted to providing the exposition of promising analytical and numerical techniques for solving challenging biomedical imaging problems, which trigger the investigation of interesting issues in various branches of mathematics.

  15. Biomedical Image Processing

    CERN Document Server

    Deserno, Thomas Martin

    2011-01-01

    In modern medicine, imaging is the most effective tool for diagnostics, treatment planning and therapy. Almost all modalities have went to directly digital acquisition techniques and processing of this image data have become an important option for health care in future. This book is written by a team of internationally recognized experts from all over the world. It provides a brief but complete overview on medical image processing and analysis highlighting recent advances that have been made in academics. Color figures are used extensively to illustrate the methods and help the reader to understand the complex topics.

  16. Biomedical signal and image processing

    CERN Document Server

    Najarian, Kayvan

    2012-01-01

    INTRODUCTION TO DIGITAL SIGNAL AND IMAGE PROCESSINGSignals and Biomedical Signal ProcessingIntroduction and OverviewWhat is a ""Signal""?Analog, Discrete, and Digital SignalsProcessing and Transformation of SignalsSignal Processing for Feature ExtractionSome Characteristics of Digital ImagesSummaryProblemsFourier TransformIntroduction and OverviewOne-Dimensional Continuous Fourier TransformSampling and NYQUIST RateOne-Dimensional Discrete Fourier TransformTwo-Dimensional Discrete Fourier TransformFilter DesignSummaryProblemsImage Filtering, Enhancement, and RestorationIntroduction and Overview

  17. Biomedical Optical Imaging Technologies Design and Applications

    CERN Document Server

    2013-01-01

    This book provides an introduction to design of biomedical optical imaging technologies and their applications. The main topics include: fluorescence imaging, confocal imaging, micro-endoscope, polarization imaging, hyperspectral imaging, OCT imaging, multimodal imaging and spectroscopic systems. Each chapter is written by the world leaders of the respective fields, and will cover: principles and limitations of optical imaging technology, system design and practical implementation for one or two specific applications, including design guidelines, system configuration, optical design, component requirements and selection, system optimization and design examples, recent advances and applications in biomedical researches and clinical imaging. This book serves as a reference for students and researchers in optics and biomedical engineering.

  18. Biomedical signal and image processing.

    Science.gov (United States)

    Cerutti, Sergio; Baselli, Giuseppe; Bianchi, Anna; Caiani, Enrico; Contini, Davide; Cubeddu, Rinaldo; Dercole, Fabio; Rienzo, Luca; Liberati, Diego; Mainardi, Luca; Ravazzani, Paolo; Rinaldi, Sergio; Signorini, Maria; Torricelli, Alessandro

    2011-01-01

    Generally, physiological modeling and biomedical signal processing constitute two important paradigms of biomedical engineering (BME): their fundamental concepts are taught starting from undergraduate studies and are more completely dealt with in the last years of graduate curricula, as well as in Ph.D. courses. Traditionally, these two cultural aspects were separated, with the first one more oriented to physiological issues and how to model them and the second one more dedicated to the development of processing tools or algorithms to enhance useful information from clinical data. A practical consequence was that those who did models did not do signal processing and vice versa. However, in recent years,the need for closer integration between signal processing and modeling of the relevant biological systems emerged very clearly [1], [2]. This is not only true for training purposes(i.e., to properly prepare the new professional members of BME) but also for the development of newly conceived research projects in which the integration between biomedical signal and image processing (BSIP) and modeling plays a crucial role. Just to give simple examples, topics such as brain–computer machine or interfaces,neuroengineering, nonlinear dynamical analysis of the cardiovascular (CV) system,integration of sensory-motor characteristics aimed at the building of advanced prostheses and rehabilitation tools, and wearable devices for vital sign monitoring and others do require an intelligent fusion of modeling and signal processing competences that are certainly peculiar of our discipline of BME.

  19. [Self-archiving of biomedical papers in open access repositories].

    Science.gov (United States)

    Abad-García, M Francisca; Melero, Remedios; Abadal, Ernest; González-Teruel, Aurora

    2010-04-01

    Open-access literature is digital, online, free of charge, and free of most copyright and licensing restrictions. Self-archiving or deposit of scholarly outputs in institutional repositories (open-access green route) is increasingly present in the activities of the scientific community. Besides the benefits of open access for visibility and dissemination of science, it is increasingly more often required by funding agencies to deposit papers and any other type of documents in repositories. In the biomedical environment this is even more relevant by the impact scientific literature can have on public health. However, to make self-archiving feasible, authors should be aware of its meaning and the terms in which they are allowed to archive their works. In that sense, there are some tools like Sherpa/RoMEO or DULCINEA (both directories of copyright licences of scientific journals at different levels) to find out what rights are retained by authors when they publish a paper and if they allow to implement self-archiving. PubMed Central and its British and Canadian counterparts are the main thematic repositories for biomedical fields. In our country there is none of similar nature, but most of the universities and CSIC, have already created their own institutional repositories. The increase in visibility of research results and their impact on a greater and earlier citation is one of the most frequently advance of open access, but removal of economic barriers to access to information is also a benefit to break borders between groups.

  20. Review of Biomedical Image Processing

    Directory of Open Access Journals (Sweden)

    Ciaccio Edward J

    2011-11-01

    Full Text Available Abstract This article is a review of the book: 'Biomedical Image Processing', by Thomas M. Deserno, which is published by Springer-Verlag. Salient information that will be useful to decide whether the book is relevant to topics of interest to the reader, and whether it might be suitable as a course textbook, are presented in the review. This includes information about the book details, a summary, the suitability of the text in course and research work, the framework of the book, its specific content, and conclusions.

  1. Images - RPSD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ta file File name: rpsd_images.zip File URL: ftp://ftp.biosciencedbc.jp/archive/rpsd/LATEST/rpsd_images.zip ... History of This Database Site Policy | Contact Us Images - RPSD | LSDB Archive ...

  2. Mathematics and physics of emerging biomedical imaging

    National Research Council Canada - National Science Library

    National Research Council Staff; Commission on Physical Sciences, Mathematics, and Applications; Division on Engineering and Physical Sciences; National Research Council; National Academy of Sciences

    .... Incorporating input from dozens of biomedical researchers who described what they perceived as key open problems of imaging that are amenable to attack by mathematical scientists and physicists...

  3. Biomedical image understanding methods and applications

    CERN Document Server

    Lim, Joo-Hwee; Xiong, Wei

    2015-01-01

    A comprehensive guide to understanding and interpreting digital images in medical and functional applications Biomedical Image Understanding focuses on image understanding and semantic interpretation, with clear introductions to related concepts, in-depth theoretical analysis, and detailed descriptions of important biomedical applications. It covers image processing, image filtering, enhancement, de-noising, restoration, and reconstruction; image segmentation and feature extraction; registration; clustering, pattern classification, and data fusion. With contributions from ex

  4. Image files - RPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ftp://ftp.biosciencedbc.jp/archive/rpd/LATEST/rpd_gel_image.zip File size: 38.5 MB Simple search URL - Data ... License Update History of This Database Site Policy | Contact Us Image files - RPD | LSDB Archive ...

  5. Visualization and classification in biomedical terahertz pulsed imaging

    International Nuclear Information System (INIS)

    Loeffler, Torsten; Siebert, Karsten; Czasch, Stephanie; Bauer, Tobias; Roskos, Hartmut G

    2002-01-01

    'Visualization' in imaging is the process of extracting useful information from raw data in such a way that meaningful physical contrasts are developed. 'Classification' is the subsequent process of defining parameter ranges which allow us to identify elements of images such as different tissues or different objects. In this paper, we explore techniques for visualization and classification in terahertz pulsed imaging (TPI) for biomedical applications. For archived (formalin-fixed, alcohol-dehydrated and paraffin-mounted) test samples, we investigate both time- and frequency-domain methods based on bright- and dark-field TPI. Successful tissue classification is demonstrated

  6. Double-compression method for biomedical images

    Science.gov (United States)

    Antonenko, Yevhenii A.; Mustetsov, Timofey N.; Hamdi, Rami R.; Małecka-Massalska, Teresa; Orshubekov, Nurbek; DzierŻak, RóŻa; Uvaysova, Svetlana

    2017-08-01

    This paper describes a double compression method (DCM) of biomedical images. A comparison of image compression factors in size JPEG, PNG and developed DCM was carried out. The main purpose of the DCM - compression of medical images while maintaining the key points that carry diagnostic information. To estimate the minimum compression factor an analysis of the coding of random noise image is presented.

  7. Optomechatronics for Biomedical Optical Imaging: An Overview

    Directory of Open Access Journals (Sweden)

    Cho Hyungsuck

    2015-01-01

    Full Text Available The use of optomechatronic technology, particularly in biomedical optical imaging, is becoming pronounced and ever increasing due to its synergistic effect of the integration of optics and mechatronics. The background of this trend is that the biomedical optical imaging for example in-vivo imaging related to retraction of tissues, diagnosis, and surgical operations have a variety of challenges due to complexity in internal structure and properties of biological body and the resulting optical phenomena. This paper addresses the technical issues related to tissue imaging, visualization of interior surfaces of organs, laparoscopic and endoscopic imaging and imaging of neuronal activities and structures. Within such problem domains the paper overviews the states of the art technology focused on how optical components are fused together with those of mechatronics to create the functionalities required for the imaging systems. Future perspective of the optical imaging in biomedical field is presented in short.

  8. Genre-based Search through Biomedical Images

    NARCIS (Netherlands)

    Geusebroek, J.M.; Hoang, M.A.; van Gemert, J.; Worring, M.

    2002-01-01

    We exploit the retrieval of visual information from biomedical scientific publication databses. Therefore, we consider the use of domain specific genres to automatically subdivide large image databases into smaller, consistent parts. Combination with Latent Semantic Indexing on the picture captions

  9. Biomedical image retrieval using microscopic configuration with ...

    Indian Academy of Sciences (India)

    G DEEP

    2018-03-10

    Mar 10, 2018 ... feature database. The selection of feature descriptors affects the image retrieval performance. In early years, Manjunath et al [7] used features based on intensity histogram for biomedical image retrieval. However, their retrieval performance is usually limited especially on large databases due to lack of ...

  10. University of Vermont Center for Biomedical Imaging

    Energy Technology Data Exchange (ETDEWEB)

    Bernstein, Dr. Ira [University of Vermont and State Agricultural College

    2013-08-02

    This grant was awarded in support of Phase 2 of the University of Vermont Center for Biomedical Imaging. Phase 2 outlined several specific aims including: The development of expertise in MRI and fMRI imaging and their applications The acquisition of peer reviewed extramural funding in support of the Center The development of a Core Imaging Advisory Board, fee structure and protocol review and approval process.

  11. Mathematics and physics of emerging biomedical imaging

    National Research Council Canada - National Science Library

    National Research Council Staff; Commission on Physical Sciences, Mathematics, and Applications; Division on Engineering and Physical Sciences; National Research Council; National Academy of Sciences

    ... of Emerging Dynamic Biomedical Imaging Board on Mathematical Sciences Board on Physics and Astronomy Commission on Physical Sciences, Mathematics, and Applications National Research Council and Board on Biobehavioral Sciences and Mental Disorders Institute of Medicine National Academy Press Washington, D.C. 1996 i Copyrightthe true use are Please ...

  12. Archiver ailleurs, archiver autrement ? Archiving Elsewhere, Archiving Differently? : The Arab Image Foundation

    Directory of Open Access Journals (Sweden)

    Stefanie Baumann

    2012-05-01

    Full Text Available La « Fondation arabe pour l’image » est un projet archivistique dont le siège est à Beyrouth, et qui est dédié à la collection de photographies du Moyen-Orient prises par des photographes arabes entre 1860 et 1960. Elle a été lancée par un groupe d’artistes en vue d’instaurer une sorte d’histoire alternative de la photographie — qui contrerait les manuels d’histoire de la photographie européens ou américains dans lesquels les représentations photographiques du monde arabe sont souvent construites à partir d’un point de vue orientaliste. La structure et le fonctionnement de ce centre d’archives suivent des logiques hétérogènes remettant en question non seulement le concept d’archive et ses pratiques institutionnelles, mais aussi l’image photographique dans différents contextes, et selon ses différentes propriétés et connotations.The “Arab Image Foundation” is an archival project based in Beirut, dedicated to collecting photographs of the Middle East taken by Arab photographers between 1860 and 1960. It was founded by a group of artists who wanted to establish a kind of alternative history of photography—which would counter European and American textbooks on the history of photography, in which photographic representations of the Arab world are often constructed from an orientalist point of view. The structure and operation of this archive centre follow heterogeneous rationales, calling into question not only the concept of archives and their institutional practices, but also that of the photographic image in different contexts, and according to its different properties and connotations.

  13. BIG: a Grid Portal for Biomedical Data and Images

    Directory of Open Access Journals (Sweden)

    Giovanni Aloisio

    2004-06-01

    Full Text Available Modern management of biomedical systems involves the use of many distributed resources, such as high performance computational resources to analyze biomedical data, mass storage systems to store them, medical instruments (microscopes, tomographs, etc., advanced visualization and rendering tools. Grids offer the computational power, security and availability needed by such novel applications. This paper presents BIG (Biomedical Imaging Grid, a Web-based Grid portal for management of biomedical information (data and images in a distributed environment. BIG is an interactive environment that deals with complex user's requests, regarding the acquisition of biomedical data, the "processing" and "delivering" of biomedical images, using the power and security of Computational Grids.

  14. Development of image mappers for hyperspectral biomedical imaging applications.

    Science.gov (United States)

    Kester, Robert T; Gao, Liang; Tkaczyk, Tomasz S

    2010-04-01

    A new design and fabrication method is presented for creating large-format (>100 mirror facets) image mappers for a snapshot hyperspectral biomedical imaging system called an image mapping spectrometer (IMS). To verify this approach a 250 facet image mapper with 25 multiple-tilt angles is designed for a compact IMS that groups the 25 subpupils in a 5 x 5 matrix residing within a single collecting objective's pupil. The image mapper is fabricated by precision diamond raster fly cutting using surface-shaped tools. The individual mirror facets have minimal edge eating, tilt errors of <1 mrad, and an average roughness of 5.4 nm.

  15. Ultrawideband radar imaging system for biomedical applications

    International Nuclear Information System (INIS)

    Jafari, H.M.; Liu, W.; Hranilovic, S.; Deen, M.J.

    2006-01-01

    Ultrawideband (UWB) (3-10 GHz) radar imaging systems offer much promise for biomedical applications such as cancer detection because of their good penetration and resolution characteristics. The underlying principle of UWB cancer detection is a significant contrast in dielectric properties, which is estimated to be greater than 2:1 between normal and cancerous tissue, compared to a few-percent contrast in radiographic density exploited by x rays. This article presents a feasibility study of the UWB imaging of liver cancer tumors, based on the frequency-dependent finite difference time domain method. The reflection, radiation, and scattering properties of UWB pulses as they propagate through the human body are studied. The reflected and back-scattered electromagnetic energies from cancer tumors inside the liver are also investigated. An optimized, ultrawideband antenna was designed for near field operation, allowing for the reduction of the air-skin interface. It will be placed on the fat-liver tissue phantom with a malignant tumor stimulant. By performing an incremental scan over the phantom and removing early time artifacts, including reflection from the antenna ends, images based on the back-scattered signal from the tumor can be constructed. This research is part of our effort to develop a UWB cancer detection system with good detection and localization properties

  16. Proceedings of the international society for optical engineering biomedical image processing 2

    International Nuclear Information System (INIS)

    Bovik, A.G.; Howard, V.

    1991-01-01

    This book contains the proceedings of biomedical image processing. Topics covered include: Filtering and reconstruction of biomedical images; analysis, classification and recognition of biomedical images; and 3-D microscopy

  17. 78 FR 3009 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-01-15

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Biomedical Imaging and Bioengineering, National Institutes of Health, 6707 Democracy Boulevard, Suite 959...

  18. 78 FR 66373 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-11-05

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Grossman, DDS, Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering, 6707...

  19. 75 FR 74068 - National Institute Of Biomedical Imaging And Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-11-30

    ... HUMAN SERVICES National Institutes of Health National Institute Of Biomedical Imaging And Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, 6707 Democracy Boulevard...

  20. 78 FR 9066 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-02-07

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... of Biomedical Imaging and Bioengineering, National Institutes of Health, 6707 Democracy Boulevard...

  1. 78 FR 52938 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-08-27

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special....D., Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering, 6707...

  2. 78 FR 67375 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-11-12

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Grossman, DDS, Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering, 6707...

  3. 77 FR 50516 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-08-21

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...., Scientific Review Officer, National Institute of Biomedical Imaging, And Bioengineering, National Institutes...

  4. 77 FR 2987 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-01-20

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special..., National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, 6707 Democracy...

  5. 78 FR 76632 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-12-18

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Review Officer, National Institute of Biomedical Imaging and Bioengineering, 6707 Democracy Boulevard...

  6. 78 FR 24763 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-04-26

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Institute of Biomedical Imaging and Bioengineering. The meeting will be closed to the public as indicated... National Institute of Biomedical Imaging and Bioengineering, including consideration of personal...

  7. 78 FR 25752 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2013-05-02

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Officer, National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, 6707...

  8. 77 FR 24972 - National Institute of Biomedical Imaging and Bioengineering Notice of Closed Meeting

    Science.gov (United States)

    2012-04-26

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Institute of Biomedical Imaging and Bioengineering. The meeting will be closed to the public as indicated... National Institute of Biomedical Imaging and Bioengineering, including consideration of personal...

  9. 76 FR 23326 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-04-26

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special..., Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering, National Institutes...

  10. 78 FR 45254 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-07-26

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...., Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering, 6707 Democracy...

  11. 76 FR 572 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-01-05

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special..., PhD, Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering, National...

  12. 75 FR 61769 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-10-06

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, 6707 Democracy Boulevard...

  13. 77 FR 25487 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-04-30

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Review Officer, National Institute of Biomedical Imaging and Bioengineering, National Institutes of...

  14. 78 FR 67373 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-11-12

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Grossman, DDS, Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering, 6707...

  15. 77 FR 71605 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2012-12-03

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Biomedical Imaging and Bioengineering Special Emphasis Panel; MSM Program Review. Date: February 26, 2013...

  16. 78 FR 54259 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-09-03

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special..., Ph.D., Scientific Review Officer, National Institute of Biomedical Imaging, and Bioengineering, 6707...

  17. 77 FR 74675 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2012-12-17

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  18. 78 FR 3903 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2013-01-17

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  19. 76 FR 53690 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

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    2011-08-29

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  20. 78 FR 31953 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

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    2013-05-28

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  1. 77 FR 51544 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-08-24

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  2. 76 FR 58023 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

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    2011-09-19

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  3. 78 FR 10185 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-02-13

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  4. 78 FR 35041 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-06-11

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Officer, National Institute of Biomedical Imaging and Bioengineering, 6707 Democracy Boulevard, Room 960...

  5. Terahertz Imaging for Biomedical Applications Pattern Recognition and Tomographic Reconstruction

    CERN Document Server

    Yin, Xiaoxia; Abbott, Derek

    2012-01-01

    Terahertz Imaging for Biomedical Applications: Pattern Recognition and Tomographic Reconstruction presents the necessary algorithms needed to assist screening, diagnosis, and treatment, and these algorithms will play a critical role in the accurate detection of abnormalities present in biomedical imaging. Terahertz biomedical imaging has become an area of interest due to its ability to simultaneously acquire both image and spectral information. Terahertz imaging systems are being commercialized with an increasing number of trials performed in a biomedical setting. Terahertz tomographic imaging and detection technology contributes to the ability to identify opaque objects with clear boundaries,and would be useful to both in vivo and ex vivo environments. This book also: Introduces terahertz radiation techniques and provides a number of topical examples of signal and image processing, as well as machine learning Presents the most recent developments in an emerging field, terahertz radiation Utilizes new methods...

  6. 76 FR 69748 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-11-09

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Officer, National Institute of Biomedical Imagin and Bioengineering, National Institutes of Health,6707...

  7. Microlenses and microcameras for biomedical imaging

    Science.gov (United States)

    Kanhere, Aditi

    Liquid lens technology is a rapidly progressing field driven by the promise of low cost fabrication, faster response, fewer mechanical elements, versatility and ease of customization for different applications. Here we present the use of liquid lenses for biomedical optics and medical imaging. I will specifically focus on our approaches towards the development of two liquid-lens optical systems -- laparoscopic cameras and 3D microscopy. The first part of this work is based on the development of a multi-camera laparoscopic imaging system with tunable focusing capability. The work attempts to find a solution to overcome many of the fundamental challenges faced by current laparoscopic imaging systems. The system is developed upon the key idea that widely spread multiple, tunable microcameras can cover a large range of vantage points and field of view (FoV) for intra-abdominal visualization. Our design features multiple tunable-focus microcameras integrated with a surgical port to provide panoramic intra-abdominal visualization with enhanced depth perception. Our system can be optically tuned to focus in on objects within a range of 5 mm to infinity, with a FoV adjustable between 36 degrees and 130 degrees. This unique approach also eliminates the requirement of an exclusive imaging port and need for navigation of cameras between ports during surgery. The second part of this report focuses on the application of tunable lenses in microscopy. Conventional wide-field microscopy is one of the most widely used optical microscopy technique. This technique typically captures a two dimensional image of a specimen. For a volumetric visualization of the sample or to enable depth scanning along the axial direction, it is necessary to move the sample relative to the fixed focal plane of the microscope objective. For this purpose, a mechanical z-scanning stage is typically employed. The stage enables the focal plane to move through the sample. Typical approaches used to achieve

  8. An Archive of Digital Images.

    Science.gov (United States)

    Fantini, M.; And Others

    1990-01-01

    Describes the architecture of the prototype of an image management system that has been used to develop an application concerning images of frescoes in the Sistina Chapel in the Vatican. Hardware and software design are described, the use of local area networks (LANs) is discussed, and data organization is explained. (15 references) (LRW)

  9. Image collection - Togo Picture Gallery | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Togo Picture Gallery Image collection Data detail Data name Image collection DOI - Descripti...nload License Update History of This Database Site Policy | Contact Us Image collection - Togo Picture Gallery | LSDB Archive ...

  10. Image of Arabidopsis phenotype - Arabidopsis Phenome Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Arab...idopsis Phenome Database Image of Arabidopsis phenotype Data detail Data name Image of Arab...idopsis phenotype DOI 10.18908/lsdba.nbdc01509-002 Description of data contents Mutant images in Observation of Arab...idopsis phenotype Data file File name: piam_image.tar.gz File URL: ftp://ftp.biosciencedbc.jp/archive/arab...tory of This Database Site Policy | Contact Us Image of Arabidopsis phenotype - Arabidopsis Phenome Database | LSDB Archive ...

  11. Medical image archive node simulation and architecture

    Science.gov (United States)

    Chiang, Ted T.; Tang, Yau-Kuo

    1996-05-01

    It is a well known fact that managed care and new treatment technologies are revolutionizing the health care provider world. Community Health Information Network and Computer-based Patient Record projects are underway throughout the United States. More and more hospitals are installing digital, `filmless' radiology (and other imagery) systems. They generate a staggering amount of information around the clock. For example, a typical 500-bed hospital might accumulate more than 5 terabytes of image data in a period of 30 years for conventional x-ray images and digital images such as Magnetic Resonance Imaging and Computer Tomography images. With several hospitals contributing to the archive, the storage required will be in the hundreds of terabytes. Systems for reliable, secure, and inexpensive storage and retrieval of digital medical information do not exist today. In this paper, we present a Medical Image Archive and Distribution Service (MIADS) concept. MIADS is a system shared by individual and community hospitals, laboratories, and doctors' offices that need to store and retrieve medical images. Due to the large volume and complexity of the data, as well as the diversified user access requirement, implementation of the MIADS will be a complex procedure. One of the key challenges to implementing a MIADS is to select a cost-effective, scalable system architecture to meet the ingest/retrieval performance requirements. We have performed an in-depth system engineering study, and developed a sophisticated simulation model to address this key challenge. This paper describes the overall system architecture based on our system engineering study and simulation results. In particular, we will emphasize system scalability and upgradability issues. Furthermore, we will discuss our simulation results in detail. The simulations study the ingest/retrieval performance requirements based on different system configurations and architectures for variables such as workload, tape

  12. Laser speckle contrast imaging in biomedical optics.

    Science.gov (United States)

    Boas, David A; Dunn, Andrew K

    2010-01-01

    First introduced in the 1980s, laser speckle contrast imaging is a powerful tool for full-field imaging of blood flow. Recently laser speckle contrast imaging has gained increased attention, in part due to its rapid adoption for blood flow studies in the brain. We review the underlying physics of speckle contrast imaging and discuss recent developments to improve the quantitative accuracy of blood flow measures. We also review applications of laser speckle contrast imaging in neuroscience, dermatology and ophthalmology.

  13. A robust pointer segmentation in biomedical images toward building a visual ontology for biomedical article retrieval

    Science.gov (United States)

    You, Daekeun; Simpson, Matthew; Antani, Sameer; Demner-Fushman, Dina; Thoma, George R.

    2013-01-01

    Pointers (arrows and symbols) are frequently used in biomedical images to highlight specific image regions of interest (ROIs) that are mentioned in figure captions and/or text discussion. Detection of pointers is the first step toward extracting relevant visual features from ROIs and combining them with textual descriptions for a multimodal (text and image) biomedical article retrieval system. Recently we developed a pointer recognition algorithm based on an edge-based pointer segmentation method, and subsequently reported improvements made on our initial approach involving the use of Active Shape Models (ASM) for pointer recognition and region growing-based method for pointer segmentation. These methods contributed to improving the recall of pointer recognition but not much to the precision. The method discussed in this article is our recent effort to improve the precision rate. Evaluation performed on two datasets and compared with other pointer segmentation methods show significantly improved precision and the highest F1 score.

  14. Digital image archiving: challenges and choices.

    Science.gov (United States)

    Dumery, Barbara

    2002-01-01

    In the last five years, imaging exam volume has grown rapidly. In addition to increased image acquisition, there is more patient information per study. RIS-PACS integration and information-rich DICOM headers now provide us with more patient information relative to each study. The volume of archived digital images is increasing and will continue to rise at a steeper incline than film-based storage of the past. Many filmless facilities have been caught off guard by this increase, which has been stimulated by many factors. The most significant factor is investment in new digital and DICOM-compliant modalities. A huge volume driver is the increase in images per study from multi-slice technology. Storage requirements also are affected by disaster recovery initiatives and state retention mandates. This burgeoning rate of imaging data volume presents many challenges: cost of ownership, data accessibility, storage media obsolescence, database considerations, physical limitations, reliability and redundancy. There are two basic approaches to archiving--single tier and multi-tier. Each has benefits. With a single-tier approach, all the data is stored on a single media that can be accessed very quickly. A redundant copy of the data is then stored onto another less expensive media. This is usually a removable media. In this approach, the on-line storage is increased incrementally as volume grows. In a multi-tier approach, storage levels are set up based on access speed and cost. In other words, all images are stored at the deepest archiving level, which is also the least expensive. Images are stored on or moved back to the intermediate and on-line levels if they will need to be accessed more quickly. It can be difficult to decide what the best approach is for your organization. The options include RAIDs (redundant array of independent disks), direct attached RAID storage (DAS), network storage using RAIDs (NAS and SAN), removable media such as different types of tape, compact

  15. Picture archiving and fundus imaging in a glaucoma clinic.

    Science.gov (United States)

    Lamminen, Heikki

    2003-01-01

    Ophthalmological image archiving and distribution can be automated using a picture archiving and communication system (PACS). A fundus PACS has been in clinical use since February 2000 at the ophthalmology clinic of Tampere University Hospital. It consists of a digital fundus camera, an imaging workstation, from which new patients can be added to the archive, 10 viewing stations and an image archive server. In glaucoma imaging, the fundus images taken from a patient are transferred from the imaging workstation to the image archive server and are then immediately available from the physician's viewing workstation; the transfer time of an average image, of 350 kbit, is 0.0035 s, even though the archive is located 5 km away. After 18 months of operation there were over 16,000 images archived; these took 5.3 GByte of a total storage capacity of 41.9 GByte. The network and archive server achieved 99% reliability in use. Digital imaging makes it possible to shift ophthalmology clinics towards more patient-oriented treatment procedures.

  16. Biomedical Imaging and Computational Modeling in Biomechanics

    CERN Document Server

    Iacoviello, Daniela

    2013-01-01

    This book collects the state-of-art and new trends in image analysis and biomechanics. It covers a wide field of scientific and cultural topics, ranging from remodeling of bone tissue under the mechanical stimulus up to optimizing the performance of sports equipment, through the patient-specific modeling in orthopedics, microtomography and its application in oral and implant research, computational modeling in the field of hip prostheses, image based model development and analysis of the human knee joint, kinematics of the hip joint, micro-scale analysis of compositional and mechanical properties of dentin, automated techniques for cervical cell image analysis, and iomedical imaging and computational modeling in cardiovascular disease.   The book will be of interest to researchers, Ph.D students, and graduate students with multidisciplinary interests related to image analysis and understanding, medical imaging, biomechanics, simulation and modeling, experimental analysis.

  17. Ultrasmall lanthanide oxide nanoparticles for biomedical imaging and therapy

    CERN Document Server

    Lee, Gang Ho

    2014-01-01

    Most books discuss general and broad topics regarding molecular imagings. However, Ultrasmall Lanthanide Oxide Nanoparticles for Biomedical Imaging and Therapy, will mainly focus on lanthanide oxide nanoparticles for molecular imaging and therapeutics. Multi-modal imaging capabilities will discussed, along with up-converting FI by using lanthanide oxide nanoparticles. The synthesis will cover polyol synthesis of lanthanide oxide nanoparticles, Surface coatings with biocompatible and hydrophilic ligands will be discussed and TEM images and dynamic light scattering (DLS) patterns will be

  18. Applications of Micro-Raman Imaging in Biomedical Research

    NARCIS (Netherlands)

    Otto, Cornelis; de Grauw, C.J.; de Grauw, C.J.; Duindam, J.J.; Duindam, J.J.; Sijtsema, N.M.; Greve, Jan

    1997-01-01

    Recent results are presented of the application of imaging micro-Raman spectrometers in cellular biophysics and biomedical research. Various micro-Raman spectrometers have been developed that are now routinely applied in these fields. Results are presented that were obtained with a linescan Raman

  19. 76 FR 40922 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-07-12

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... and Bioengineering, National Institutes of Health, 6707 Democracy Boulevard, Room 960, Bethesda, MD...

  20. 75 FR 57969 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-09-23

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  1. 75 FR 54641 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-09-08

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  2. 75 FR 6039 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-02-05

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  3. 75 FR 18217 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-04-09

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  4. 78 FR 42970 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-07-18

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  5. 77 FR 31624 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-05-29

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  6. 78 FR 24223 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-04-24

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... and Bioengineering, National Institutes of Health, 6707 Democracy Boulevard, Room 959, Bethesda, MD...

  7. 75 FR 18216 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-04-09

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  8. 78 FR 63998 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-10-25

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  9. 78 FR 71627 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-11-29

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  10. 77 FR 37684 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-06-22

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  11. 75 FR 25273 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-05-07

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  12. 76 FR 28795 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-05-18

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  13. 76 FR 28055 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-05-13

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  14. 76 FR 62814 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-10-11

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  15. 77 FR 38845 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-06-29

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  16. 75 FR 35820 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-06-23

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  17. 76 FR 10910 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-02-28

    ... From the Federal Register Online via the Government Publishing Office ] DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  18. 76 FR 5593 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-02-01

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  19. 78 FR 55268 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-09-10

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  20. 76 FR 77546 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-12-13

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  1. 78 FR 6126 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting.

    Science.gov (United States)

    2013-01-29

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  2. 77 FR 3480 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-01-24

    ... Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting Pursuant to section 10(d) of... Institute of Biomedical Imaging and Bioengineering Special Emphasis Panel, R13 (2012/05). Date: February 15...

  3. 77 FR 2737 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-01-19

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  4. 77 FR 49821 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-08-17

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... and Bioengineering, National Institutes of Health, 6707 Democracy Boulevard, Room 959, Bethesda, MD...

  5. 78 FR 58547 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-09-24

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special...

  6. Biomedical image retrieval using microscopic configuration with ...

    Indian Academy of Sciences (India)

    G DEEP

    2018-03-10

    Mar 10, 2018 ... uniform if they contain the main part of the noise of the images. A region with no transitions is considered as a background or a flat region of the image. The LBP feature vector is extracted from each cell ..... on a core2 Quad computer with 2.66 GHz, 4 GB of memory and all methods are implemented on the ...

  7. Fluorescent quantum dots: synthesis, biomedical optical imaging, and biosafety assessment.

    Science.gov (United States)

    Ji, Xiaoyuan; Peng, Fei; Zhong, Yiling; Su, Yuanyuan; He, Yao

    2014-12-01

    The marriage of nanomaterials with biology has significantly promoted advancement of biological techniques, profoundly facilitating basic research and practical applications in biological and biomedical fields. Taking advantages of unique optical properties (e.g., strong fluorescence, robust photostability, size-tunable emission wavelengths, etc.), fluorescent quantum dots (QDs), appearing as high-performance biological fluorescent nanoprobes, have been extensively explored for a variety of biomedical optical imaging applications. In this review, we present representative synthetic strategies for preparation of QDs and their applications in biomedical optical imaging, as well as risk assessments in vitro and in vivo. Briefly, we first summarize recent progress in fabrication of QDs via two rudimentary approaches, i.e., organometallic route and aqueous synthesis. Next we present representative achievement in QDs-based in vitro and in vivo biomedical optical imaging applications. We further discuss the toxicity assessment of QDs, ranging from cell studies to animal models. In the final section, we discuss challenges and perspectives for the QDs-relative bioapplications in the future. Copyright © 2014 Elsevier B.V. All rights reserved.

  8. Computational optical biomedical spectroscopy and imaging

    CERN Document Server

    Musa, Sarhan M

    2015-01-01

    Applications of Vibrational Spectroscopic Imaging in Personal Care Studies; Guojin Zhang, Roger L. McMullen, Richard Mendelsohn, and Osama M. MusaFluorescence Bioimaging with Applications to Chemistry; Ufana Riaz and S.M. AshrafNew Trends in Immunohistochemical, Genome, and Metabolomics Imaging; G. Livanos, Aditi Deshpande, C. Narayan, Ying Na, T. Quang, T. Farrahi, R. Koglin, Suman Shrestha, M. Zervakis, and George C. GiakosDeveloping a Comprehensive Taxonomy for Human Cell Types; Richard Conroy and Vinay PaiFunctional Near-Infrared S

  9. Coherent fiber supercontinuum laser for nonlinear biomedical imaging

    DEFF Research Database (Denmark)

    Tu, Haohua; Liu, Yuan; Liu, Xiaomin

    2012-01-01

    Nonlinear biomedical imaging has not benefited from the well-known techniques of fiber supercontinuum generation for reasons such as poor coherence (or high noise), insufficient controllability, low spectral power intensity, and inadequate portability. Fortunately, a few techniques involving...... nonlinear fiber optics and femtosecond fiber laser development have emerged to overcome these critical limitations. These techniques pave the way for conducting point-of-care nonlinear biomedical imaging by a low-maintenance cost-effective coherent fiber supercontinuum laser, which covers a broad emission...... wavelength of 350-1700 nm. A prototype of this laser has been demonstrated in label-free multimodal nonlinear imaging of cell and tissue samples.© (2012) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only....

  10. 77 FR 13347 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2012-03-06

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Committee: National Institute of Biomedical Imaging and Bioengineering Special Emphasis Panel; Point-of-Care...

  11. 76 FR 76744 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2011-12-08

    ... Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting Pursuant to section 10(d) of... Institute of Biomedical Imaging and Bioengineering Special Emphasis Panel. Date: January 30-31, 2012. Time... Sukhareva, PhD, Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering...

  12. 77 FR 27784 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-05-11

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  13. 78 FR 46995 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-08-02

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  14. 75 FR 4091 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-01-26

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Biomedical Imaging and Bioengineering, 6707 Democracy Boulevard, Suite 959, Bethesda, MD 20892, 301-451-3397...

  15. 77 FR 54581 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-09-05

    ... National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting Pursuant to section... Institute of Biomedical Imaging and Bioengineering Special Emphasis Panel, BTRC P41 Review. Date: October 10... Sukhareva, Ph.D., Scientific Review Officer, National Institute of Biomedical Imaging and Bioengineering...

  16. Nonlinear Polarimetric Microscopy for Biomedical Imaging

    Science.gov (United States)

    Samim, Masood

    A framework for the nonlinear optical polarimetry and polarimetric microscopy is developed. Mathematical equations are derived in terms of linear and nonlinear Stokes Mueller formalism, which comprehensively characterize the polarization properties of the incoming and outgoing radiations, and provide structural information about the organization of the investigated materials. The algebraic formalism developed in this thesis simplifies many predictions for a nonlinear polarimetry study and provides an intuitive understanding of various polarization properties for radiations and the intervening medium. For polarimetric microscopy experiments, a custom fast-scanning differential polarization microscope is developed, which is also capable of real-time three-dimensional imaging. The setup is equipped with a pair of high-speed resonant and galvanometric scanning mirrors, and supplemented by advanced adaptive optics and data acquisition modules. The scanning mirrors when combined with the adaptive optics deformable mirror enable fast 3D imaging. Deformable membrane mirrors and genetic algorithm optimization routines are employed to improve the imaging conditions including correcting the optical aberrations, maximizing signal intensities, and minimizing point-spread-functions of the focal volume. A field-programmable-gate array (FPGA) chip is exploited to rapidly acquire and process the multidimensional data. Using the nonlinear optical polarimetry framework and the home-built polarization microscope, a few biologically important tissues are measured and analyzed to gain insight as to their structure and dynamics. The structure and distribution of muscle sarcomere myosins, connective tissue collagen, carbohydrate-rich starch, and fruit fly eye retinal molecules are characterized with revealing polarization studies. In each case, using the theoretical framework, polarization sensitive data are analyzed to decipher the molecular orientations and nonlinear optical

  17. Biomedical imaging ontologies: A survey and proposal for future work

    Directory of Open Access Journals (Sweden)

    Barry Smith

    2015-01-01

    Full Text Available Background: Ontology is one strategy for promoting interoperability of heterogeneous data through consistent tagging. An ontology is a controlled structured vocabulary consisting of general terms (such as "cell" or "image" or "tissue" or "microscope" that form the basis for such tagging. These terms are designed to represent the types of entities in the domain of reality that the ontology has been devised to capture; the terms are provided with logical defi nitions thereby also supporting reasoning over the tagged data. Aim: This paper provides a survey of the biomedical imaging ontologies that have been developed thus far. It outlines the challenges, particularly faced by ontologies in the fields of histopathological imaging and image analysis, and suggests a strategy for addressing these challenges in the example domain of quantitative histopathology imaging. Results and Conclusions: The ultimate goal is to support the multiscale understanding of disease that comes from using interoperable ontologies to integrate imaging data with clinical and genomics data.

  18. Review of spectral imaging technology in biomedical engineering: achievements and challenges.

    Science.gov (United States)

    Li, Qingli; He, Xiaofu; Wang, Yiting; Liu, Hongying; Xu, Dongrong; Guo, Fangmin

    2013-10-01

    Spectral imaging is a technology that integrates conventional imaging and spectroscopy to get both spatial and spectral information from an object. Although this technology was originally developed for remote sensing, it has been extended to the biomedical engineering field as a powerful analytical tool for biological and biomedical research. This review introduces the basics of spectral imaging, imaging methods, current equipment, and recent advances in biomedical applications. The performance and analytical capabilities of spectral imaging systems for biological and biomedical imaging are discussed. In particular, the current achievements and limitations of this technology in biomedical engineering are presented. The benefits and development trends of biomedical spectral imaging are highlighted to provide the reader with an insight into the current technological advances and its potential for biomedical research.

  19. Photoacoustics, thermoacoustics, and acousto-optics for biomedical imaging.

    Science.gov (United States)

    Tang, M-X; Elson, D S; Li, R; Dunsby, C; Eckersley, R J

    2010-01-01

    Recently there have been significant advances in developing hybrid techniques combining electromagnetic waves with ultrasound for biomedical imaging, namely photoacoustic, thermoacoustic, and acousto-optic (or ultrasound modulated optical) tomography. All three techniques take advantage of tissue contrast offered by electromagnetic (EM) waves, while achieving good spatial resolution in deeper tissue facilitated by ultrasound. In this review the principles of the three techniques are introduced. A description of existing experimental and image reconstruction techniques is provided. Some recent key developments are highlighted and current issues in each of the areas are discussed.

  20. All-optoelectronic continuous wave THz imaging for biomedical applications

    International Nuclear Information System (INIS)

    Siebert, Karsten J; Loeffler, Torsten; Quast, Holger; Thomson, Mark; Bauer, Tobias; Leonhardt, Rainer; Czasch, Stephanie; Roskos, Hartmut G

    2002-01-01

    We present an all-optoelectronic THz imaging system for ex vivo biomedical applications based on photomixing of two continuous-wave laser beams using photoconductive antennas. The application of hyperboloidal lenses is discussed. They allow for f-numbers less than 1/2 permitting better focusing and higher spatial resolution compared to off-axis paraboloidal mirrors whose f-numbers for practical reasons must be larger than 1/2. For a specific histological sample, an analysis of image noise is discussed

  1. Multi-Atlas Segmentation of Biomedical Images: A Survey

    Science.gov (United States)

    Iglesias, Juan Eugenio; Sabuncu, Mert R.

    2015-01-01

    Multi-atlas segmentation (MAS), first introduced and popularized by the pioneering work of Rohlfing, Brandt, Menzel and Maurer Jr (2004), Klein, Mensh, Ghosh, Tourville and Hirsch (2005), and Heckemann, Hajnal, Aljabar, Rueckert and Hammers (2006), is becoming one of the most widely-used and successful image segmentation techniques in biomedical applications. By manipulating and utilizing the entire dataset of “atlases” (training images that have been previously labeled, e.g., manually by an expert), rather than some model-based average representation, MAS has the flexibility to better capture anatomical variation, thus offering superior segmentation accuracy. This benefit, however, typically comes at a high computational cost. Recent advancements in computer hardware and image processing software have been instrumental in addressing this challenge and facilitated the wide adoption of MAS. Today, MAS has come a long way and the approach includes a wide array of sophisticated algorithms that employ ideas from machine learning, probabilistic modeling, optimization, and computer vision, among other fields. This paper presents a survey of published MAS algorithms and studies that have applied these methods to various biomedical problems. In writing this survey, we have three distinct aims. Our primary goal is to document how MAS was originally conceived, later evolved, and now relates to alternative methods. Second, this paper is intended to be a detailed reference of past research activity in MAS, which now spans over a decade (2003 – 2014) and entails novel methodological developments and application-specific solutions. Finally, our goal is to also present a perspective on the future of MAS, which, we believe, will be one of the dominant approaches in biomedical image segmentation. PMID:26201875

  2. RNA secondary structure image - fRNAdb | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us fRNA...db RNA secondary structure image Data detail Data name RNA secondary structure image DOI... 10.18908/lsdba.nbdc00452-005 Description of data contents RNA secondary structure images - png.zip: RNA sec...ondary structure images (PNG) - pdf.zip: RNA secondary structure images (PDF) - thumbnail.zip: Thumbnails of RNA... secondary structure images Data file File name: RNA_secondary_structure_imag

  3. A UNIX-based prototype biomedical virtual image processor

    International Nuclear Information System (INIS)

    Fahy, J.B.; Kim, Y.

    1987-01-01

    The authors have developed a multiprocess virtual image processor for the IBM PC/AT, in order to maximize image processing software portability for biomedical applications. An interprocess communication scheme, based on two-way metacode exchange, has been developed and verified for this purpose. Application programs call a device-independent image processing library, which transfers commands over a shared data bridge to one or more Autonomous Virtual Image Processors (AVIP). Each AVIP runs as a separate process in the UNIX operating system, and implements the device-independent functions on the image processor to which it corresponds. Application programs can control multiple image processors at a time, change the image processor configuration used at any time, and are completely portable among image processors for which an AVIP has been implemented. Run-time speeds have been found to be acceptable for higher level functions, although rather slow for lower level functions, owing to the overhead associated with sending commands and data over the shared data bridge

  4. Uyghur Text Matching in Graphic Images for Biomedical Semantic Analysis.

    Science.gov (United States)

    Fang, Shancheng; Xie, Hongtao; Chen, Zhineng; Liu, Yizhi; Li, Yan

    2018-01-19

    How to read Uyghur text from biomedical graphic images is a challenge problem due to the complex layout and cursive writing of Uyghur. In this paper, we propose a system that extracts text from Uyghur biomedical images, and matches the text in a specific lexicon for semantic analysis. The proposed system possesses following distinctive properties: first, it is an integrated system which firstly detects and crops the Uyghur text lines using a single fully convolutional neural network, and then keywords in the lexicon are matched by a well-designed matching network. Second, to train the matching network effectively an online sampling method is applied, which generates synthetic data continually. Finally, we propose a GPU acceleration scheme for matching network to match a complete Uyghur text line directly rather than a single window. Experimental results on benchmark dataset show our method achieves a good performance of F-measure 74.5%. Besides, our system keeps high efficiency with 0.5s running time for each image due to the GPU acceleration scheme.

  5. Selection of Quantum Dot Wavelengths for Biomedical Assays and Imaging

    Directory of Open Access Journals (Sweden)

    Yong Taik Lim

    2003-01-01

    Full Text Available Fluorescent semiconductor nanocrystals (quantum dots [QDs] are hypothesized to be excellent contrast agents for biomedical assays and imaging. A unique property of QDs is that their absorbance increases with increasing separation between excitation and emission wavelengths. Much of the enthusiasm for using QDs in vivo stems from this property, since photon yield should be proportional to the integral of the broadband absorption. In this study, we demonstrate that tissue scatter and absorbance can sometimes offset increasing QD absorption at bluer wavelengths, and counteract this potential advantage. By using a previously validated mathematical model, we explored the effects of tissue absorbance, tissue scatter, wavelength dependence of the scatter, water-to- hemoglobin ratio, and tissue thickness on QD performance. We conclude that when embedded in biological fluids and tissues, QD excitation wavelengths will often be quite constrained, and that excitation and emission wavelengths should be selected carefully based on the particular application. Based on our results, we produced near-infrared QDs optimized for imaging surface vasculature with white light excitation and a silicon CCD camera, and used them to image the coronary vasculature in vivo. Taken together, our data should prove useful in designing fluorescent QD contrast agents optimized for specific biomedical applications.

  6. Contributions on biomedical imaging, with a side-look at molecular imaging

    International Nuclear Information System (INIS)

    Winkler, G.

    2004-05-01

    This report is intended as a brief introduction to the emerging scientific field of biomedical imaging. The breadth of the subject is shown and future fields of research are indicated, which hopefully will serve as a guide to the identification of starting points for the research in 'Biomedical and/or Molecular Imaging' at the GSF-National Research Center for Environment and Health. The report starts with a brief sketch of the history. Then a - necessarily incomplete - list of research topics is presented. It is organized in two parts: the first one addresses medical imaging, and the second one is concerned with biological point aspects of the matter. (orig.) [de

  7. Acquisition and manipulation of computed tomography images of the maxillofacial region for biomedical prototyping

    International Nuclear Information System (INIS)

    Meurer, Maria Ines; Silva, Jorge Vicente Lopes da; Santa Barbara, Ailton; Nobre, Luiz Felipe; Oliveira, Marilia Gerhardt de; Silva, Daniela Nascimento

    2008-01-01

    Biomedical prototyping has resulted from a merger of rapid prototyping and imaging diagnosis technologies. However, this process is complex, considering the necessity of interaction between biomedical sciences and engineering. Good results are highly dependent on the acquisition of computed tomography images and their subsequent manipulation by means of specific software. The present study describes the experience of a multidisciplinary group of researchers in the acquisition and manipulation of computed tomography images of the maxillofacial region aiming at biomedical prototyping for surgical purposes. (author)

  8. A novel biomedical image indexing and retrieval system via deep preference learning.

    Science.gov (United States)

    Pang, Shuchao; Orgun, Mehmet A; Yu, Zhezhou

    2018-05-01

    The traditional biomedical image retrieval methods as well as content-based image retrieval (CBIR) methods originally designed for non-biomedical images either only consider using pixel and low-level features to describe an image or use deep features to describe images but still leave a lot of room for improving both accuracy and efficiency. In this work, we propose a new approach, which exploits deep learning technology to extract the high-level and compact features from biomedical images. The deep feature extraction process leverages multiple hidden layers to capture substantial feature structures of high-resolution images and represent them at different levels of abstraction, leading to an improved performance for indexing and retrieval of biomedical images. We exploit the current popular and multi-layered deep neural networks, namely, stacked denoising autoencoders (SDAE) and convolutional neural networks (CNN) to represent the discriminative features of biomedical images by transferring the feature representations and parameters of pre-trained deep neural networks from another domain. Moreover, in order to index all the images for finding the similarly referenced images, we also introduce preference learning technology to train and learn a kind of a preference model for the query image, which can output the similarity ranking list of images from a biomedical image database. To the best of our knowledge, this paper introduces preference learning technology for the first time into biomedical image retrieval. We evaluate the performance of two powerful algorithms based on our proposed system and compare them with those of popular biomedical image indexing approaches and existing regular image retrieval methods with detailed experiments over several well-known public biomedical image databases. Based on different criteria for the evaluation of retrieval performance, experimental results demonstrate that our proposed algorithms outperform the state

  9. Trends in PACS image storage and archive.

    Science.gov (United States)

    Liu, B J; Cao, F; Zhou, M Z; Mogel, G; Documet, L

    2003-01-01

    PACS is widely used in hospitals and is considered a mission critical system for around-the-clock daily clinical operation. Scheduled or unscheduled downtime of the main PACS archive storage or server could potentially cripple the entire PACS operation. This is especially the case in a filmless hospital environment. Therefore, in a downtime event, it is most desirable for users to have only a minimal performance impact without interruption of clinical data flow or loss of data and to have available historical PACS studies. This paper summarizes some of the developments in the design and implementation of a reliable PACS that insures maximum uptime for end users while preserving the integrity of the PACS data and making it available during downtime events. It also details strategy for developing proper clinical workflow contingency procedures when a scheduled downtime event to the main archive storage and server occurs. Specifically, the design and implementation of a fault-tolerant (FT) main archive server, the development of a FT back-up archive using an application service provider (ASP) model, and the clinical experiences while upgrading a main archive server and migrating the stored PACS data to new storage media will be discussed. Copyright 2002 Elsevier Science Ltd.

  10. 77 FR 54584 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-09-05

    ... Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting Pursuant to section 10(d) of... Institute of Biomedical Imaging and Bioengineering Special Emphasis Panel, ZEB1 OSR-D(J2) P Tissue... Imaging and Bioengineering, National Institutes of Health, 6707 Democracy Boulevard, Room 959, Bethesda...

  11. Feasibility of telemammography as biomedical application for breast imaging

    Science.gov (United States)

    Beckerman, Barbara G.; Batsell, Stephen G.; MacIntyre, Lawrence P.; Sarraf, Hamed S.; Gleason, Shaun S.; Schnall, Mitchell D.

    1999-07-01

    Mammographic screening is an important tool in the early detection of breast cancer. The migration of mammography from the current mode of x-ray mammography using a film screen image detector and display to a digital technology provides an opportunity to improve access and performance of breast cancer screening. The sheer size and volume of the typical screening exam, the need to have previous screening data readily available, and the need to view other breast imaging data together to provide a common consensus and to plan treatment, make telemammography an ideal application for breast imaging. For telemammography to be a viable option, it must overcome the technical challenges related to transmission, archiving, management, processing and retrieval of large data sets. Researchers from the University of Pennsylvania, the University of Chicago and Lockheed Martin Energy Systems/Oak Ridge National Laboratory have developed a framework for transmission of large-scale medical images over high-speed networks, leveraged existing high-speed networks between research and medical facilities; tested the feasibility of point-to-point transmission of mammographic images in a near-real time environment; evaluated network performance and transmission scenarios; and investigated the impact of image preprocessing on an experimental computer-aided diagnosis system. Results of the initial study are reported here.

  12. Nanoparticles for biomedical imaging, therapy, and quantitative diagnostics

    Science.gov (United States)

    Yust, Brian G.

    Nanoparticles and nanomaterials are known to exhibit extraordinary characteristics and have a wide range of application which utilizes their unique properties. In particular, nanoparticles have shown great promise towards advancing the state of biological and biomedical techniques such as in vivo and in vitro imaging modalities, biosensing, and disease detection and therapy. Nanocrystalline hosts: NaYF4, KYF4, KGdF4, NaMF3, and KMF3 (M=Mg, Ba, Mn, Fe, Co, Ni, Cr) doped with rare earth ions have been synthesized by thermolysis, solvothermal, and hydrothermal methods. The morphology and spectroscopic properties have been thoroughly characterized. These nanoparticles (NP) are particularly useful for biomedical purposes since both the exciting and emitting wavelengths are in the near-infrared, where most tissues do not strongly absorb or scatter light. In vivo and in vitro imaging was performed with a 980 nm excitation source. Finally, NPs were conjugated with zinc phthalocyanine, a photosensitizer with a large absorption coefficient in the red and NIR regions, to illustrate the efficacy of these NPs as a platform for dual-mode infrared-activated imaging and photodynamic platforms. In addition, nonlinear optical nanomaterials, such as BaTiO3 and Ag@BaTiO3, were also synthesized and characterized. The nonlinear optical properties were investigated, and it is demonstrated that these nanoparticles can produce phase conjugate waves when used in a counterpropagating four wave mixing setup. The third order susceptibility is quantified using the z-scan technique, and the toxicity of these nanoparticles is also explored.

  13. Southern images - RGP gmap98 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP gmap98 Southern images Data detail Data name Southern images DOI 10.18908/lsdba.nbdc0031...8-02-006 Description of data contents Parental Southern hybridization image files. Data file File name: rgp_gmap98_southe...rn_image.zip File URL: ftp://ftp.biosciencedbc.jp/archive/rgp-gmap98/LATEST/rgp_gmap98_southern..._image.zip File size: 69.2 MB Simple search URL - Data acquisition method Souther...n hybridization Data analysis method For genotype segregation in F2 plants, Southern hybridization was perfo

  14. Biomedical nanotechnology for molecular imaging, diagnostics, and targeted therapy.

    Science.gov (United States)

    Nie, Shuming

    2009-01-01

    Biomedical nanotechnology is a cross-disciplinary area of research in science, engineering and medicine with broad applications for molecular imaging, molecular diagnosis, and targeted therapy. The basic rationale is that nanometer-sized particles such as semiconductor quantum dots and iron oxide nanocrystals have optical, magnetic or structural properties that are not available from either molecules or bulk solids. When linked with biotargeting ligands such as monoclonal antibodies, peptides or small molecules, these nanoparticles can be used to target diseased cells and organs (such as malignant tumors and cardiovascular plaques) with high affinity and specificity. In the "mesoscopic" size range of 5-100 nm diameter, nanoparticles also have large surface areas and functional groups for conjugating to multiple diagnostic (e.g., optical, radioisotopic, or magnetic) and therapeutic (e.g., anticancer) agents.

  15. 75 FR 39547 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-07-09

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... and Bioengineering, 6707 Democracy Boulevard, Room 960, Bethesda, MD 20892, 301-496-8775, grossmanrs...

  16. 77 FR 72365 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

    Science.gov (United States)

    2012-12-05

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Bioengineering. The meeting will be open to the public as indicated below. This will be a virtual meeting. Please... of Committee: National Advisory Council for Biomedical Imaging and Bioengineering NACBIB, January 25...

  17. 77 FR 25488 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

    Science.gov (United States)

    2012-04-30

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... for Biomedical Imaging and Bioengineering, May 21, 2012, 9:00 a.m. to 3:00 p.m., Bethesda Marriott...

  18. 78 FR 78982 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

    Science.gov (United States)

    2013-12-27

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Biomedical Imaging and Bioengineering Special Emphasis Panel, December 11, 2013, 08:30 a.m., National...

  19. 78 FR 64519 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

    Science.gov (United States)

    2013-10-29

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Biomedical Imaging and Bioengineering Special Emphasis Panel, October 3, 2013, 8:30 a.m. to 5:00 p.m...

  20. 78 FR 37557 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

    Science.gov (United States)

    2013-06-21

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Bioengineering, 6707 Democracy Boulevard, Room 960, Bethesda, MD 20892, 301-496-8775, [email protected

  1. 75 FR 15715 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-03-30

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... and Bioengineering, 6707 Democracy Boulevard, Room 960, Bethesda, MD 20892, 301-496-8775, grossmanrs...

  2. 78 FR 76634 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

    Science.gov (United States)

    2013-12-18

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Bioengineering. The meeting will be open to the public as indicated below. This will be a virtual meeting. Please... of Committee: National Advisory Council for Biomedical Imaging and Bioengineering. Date: January 22...

  3. 75 FR 76019 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

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    2010-12-07

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Bioengineering. The meeting will be open to the public as indicated below, with attendance limited to space... personal privacy. Name of Committee: National Advisory Council for Biomedical Imaging and Bioengineering...

  4. 78 FR 77474 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

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    2013-12-23

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  5. 78 FR 107 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-01-02

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Bioengineering, National Institutes of Health, 6707 Democracy Boulevard, Room 959, Bethesda, MD 20892, 301-451...

  6. 77 FR 19675 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

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    2012-04-02

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Bioengineering. The meeting will be open to the public as indicated below, with attendance limited to space... personal privacy. Name of Committee: National Advisory Council for Biomedical Imaging and Bioengineering...

  7. 76 FR 370 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

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    2011-01-04

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Bioengineering, National Institutes of Health, 6707 Democracy Boulevard, Suite 959, Bethesda, MD 20892, 301-451...

  8. 75 FR 81630 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2010-12-28

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... personal privacy. Name of Committee: National Institute of Biomedical Imaging and Bioengineering Special... Bioengineering, National Institutes of Health, 6707 Democracy Boulevard, Room 960, Bethesda, MD 20892, 301-496...

  9. 76 FR 75888 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

    Science.gov (United States)

    2011-12-05

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Bioengineering. The meeting will be open to the public as indicated below, with attendance limited to space... personal privacy. Name of Committee: National Advisory Council for Biomedical Imaging and Bioengineering...

  10. 78 FR 17937 - National Institute of Biomedical Imaging and Bioengineering; Meeting

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    2013-03-25

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  11. 78 FR 64506 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

    Science.gov (United States)

    2013-10-29

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Biomedical Imaging and Bioengineering Special Emphasis Panel, October 11, 2013, 10:00 a.m. to 5:00 p.m...

  12. 75 FR 14175 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

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    2010-03-24

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  13. 78 FR 66755 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

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    2013-11-06

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Biomedical Imaging and Bioengineering Special Emphasis Panel, October 10-11, 2013, 09:00 a.m.-08:00 p.m...

  14. 78 FR 39740 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

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    2013-07-02

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  15. 76 FR 15988 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

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    2011-03-22

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  16. 75 FR 43993 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

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    2010-07-27

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  17. 77 FR 58146 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

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    2012-09-19

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  18. 78 FR 64966 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

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    2013-10-30

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  19. 78 FR 55268 - National Institute of Biomedical Imaging and Bioengineering Amended; Notice of Meeting

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    2013-09-10

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Biomedical Imaging and Bioengineering Special Emphasis Panel, November 6, 2013, 8:00 a.m. to 5:00 p.m...

  20. 76 FR 40923 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

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    2011-07-12

    ... HUMAN SERVICES National Institutes of Health National Institute of Biomedical Imaging and Bioengineering... Bioengineering. The meeting will be open to the public as indicated below, with attendance limited to space... personal privacy. Name of Committee: National Advisory Council for Biomedical Imaging and Bioengineering...

  1. Modality prediction of biomedical literature images using multimodal feature representation

    Directory of Open Access Journals (Sweden)

    Pelka, Obioma

    2016-08-01

    Full Text Available This paper presents the modelling approaches performed to automatically predict the modality of images found in biomedical literature. Various state-of-the-art visual features such as Bag-of-Keypoints computed with dense SIFT descriptors, texture features and Joint Composite Descriptors were used for visual image representation. Text representation was obtained by vector quantisation on a Bag-of-Words dictionary generated using attribute importance derived from a χ-test. Computing the principal components separately on each feature, dimension reduction as well as computational load reduction was achieved. Various multiple feature fusions were adopted to supplement visual image information with corresponding text information. The improvement obtained when using multimodal features vs. visual or text features was detected, analysed and evaluated. Random Forest models with 100 to 500 deep trees grown by resampling, a multi class linear kernel SVM with C=0.05 and a late fusion of the two classifiers were used for modality prediction. A Random Forest classifier achieved a higher accuracy and computed Bag-of-Keypoints with dense SIFT descriptors proved to be a better approach than with Lowe SIFT.

  2. A radiographic image archive system on digital optical disks

    International Nuclear Information System (INIS)

    Mankovich, N.J.; Taira, R.K.; Cho, P.S.; Wong, W.K.; Stewart, B.K.; Huang, H.K.

    1986-01-01

    The recent introduction of projection computed radiography (CR) systems allows radiology departments to consider digital operation in over 90% of performed procedures. Ideally, current patient procedures from CT, CT, and MR along with laser-digitized historical films should be centrally stored at their full digital resolution. Magnetic disks, because of their limited storage capacity and expense, can only retain these data on a limited basis. The author devised an optical disk archive system which automatically stores images directly onto 2.6-gigabyte optical cartridges without recourse to film. This system is in full clinical operation in the UCLA Pediatric Radiology Section of the authors' department. From this experience they present (a) an analysis of the digital archiving requirements of the Pediatric Radiology Section based on CR, CT, MR, and laser digitized films; (b) the archive and retrieval methods along with performance statistics; and (c) the procedure for assuring digital image integrity

  3. Minimize the Percentage of Noise in Biomedical Images Using Neural Networks

    Directory of Open Access Journals (Sweden)

    Abdul Khader Jilani Saudagar

    2014-01-01

    Full Text Available The overall goal of the research is to improve the quality of biomedical image for telemedicine with minimum percentages of noise in the retrieved image and to take less computation time. The novelty of this technique lies in the implementation of spectral coding for biomedical images using neural networks in order to accomplish the above objectives. This work is in continuity of an ongoing research project aimed at developing a system for efficient image compression approach for telemedicine in Saudi Arabia. We compare the efficiency of this technique against existing image compression techniques, namely, JPEG2000, in terms of compression ratio, peak signal to noise ratio (PSNR, and computation time. To our knowledge, the research is the primary in providing a comparative study with other techniques used in the compression of biomedical images. This work explores and tests biomedical images such as X-rays, computed tomography (CT, magnetic resonance imaging (MRI, and positron emission tomography (PET.

  4. Rational design of nanoparticles for biomedical imaging and photovoltaic applications

    Energy Technology Data Exchange (ETDEWEB)

    Qin, Haiyan

    2011-07-01

    This thesis aims to rationally design nanoparticles and promote their applications in biomedical imaging and photovoltaic cells. Quantum dots (QDs) are promising fluorescent probes for biomedical imaging. We have fabricated two types of MSA capped QDs: CdTe/ZnSe core/shell QDs synthesized via an aqueous method and CdTe QDs via a hydrothermal method. They present high quantum yields (QYs), narrow emission band widths, high photo- and pH-stability, and low cytotoxicity. QD-IgG probes were produced and applied for labeling breast cancer marker HER2 proteins on MCF-7 cells. For the purpose of single molecule tracking using QDs as fluorescent probes, we use small affibodies instead of antibodies to produce QD-affibody probes. Smaller QD-target protein complexes are obtained using a direct immunofluorescence approach. These QD-affibody probes are developed to study the dynamic motion of single HER2 proteins on A431 cell membranes. Fluorescence blinking in single QDs is harmful for dynamic tracking due to information loss. We have experimentally studied the blinking phenomenon and the mechanism behind. We have discovered an emission bunching effect that two nearby QDs tend to emit light synchronously. The long-range Coulomb potential induced by the negative charge on the QD surface is found to be the major cause for the single QD blinking and the emission bunching in QD pairs. We have studied the in vitro cytotoxicity of CdTe QDs to human umbilical vein endothelial cells (HUVECs). The QDs treatment increases the intracellular reactive oxygen species (ROS) level and disrupts the mitochondrial membrane potential. The protein expression levels indicate that the mitochondria apoptosis is the main cause of HUVCEs apoptosis induced by CdTe QDs. Gold nanorods (GNRs) are scattering probes due to their tunable surface plasmon resonance (SPR) enhanced scattering spectrum. In order to control the yield and morphology of GNRs, we have systematically studied the effects of composition

  5. Archimedes, an archive of medical images.

    Science.gov (United States)

    Tahmoush, Dave; Samet, Hanan

    2006-01-01

    We present a medical image and medical record database for the storage, research, transmission, and evaluation of medical images. Medical images from any source that supports the DICOM standard can be stored and accessed, as well as associated analysis and annotations. Retrieval is based on patient info, date, doctor's annotations, features in the images, or a spatial combination. This database supports the secure transmission of sensitive data for tele-medicine and follows all HIPPA regulations.

  6. Imaging Chronic Traumatic Encephalopathy: A Biomedical Engineering Perspective.

    Science.gov (United States)

    Polak, Paul; Tuyl, John Van; Engel, Robin

    2016-01-01

    A disease initially associated with boxers ninety years ago, chronic traumatic encephalopathy (CTE) is now recognized as a significant risk to boxers, American football players, ice hockey players, military personnel or anyone to whom recurrent head injuries are a distinct possibility. Diagnosis is currently confirmed at autopsy, although CTE's presumed sufferers have symptoms of depression, suicidal thoughts, mood and personality changes, and loss of memory. CTE sufferers also complain of losing cognitive ability, dysfunction in everyday activities, inability to keep regular employment, violent tendencies and marital strife. Dementia may develop over the long term. Unfortunately, there is no clear consensus in regards to pathology, with both number and severity of head injuries being linked to disease progression. Despite the slow advancement of this disease, there are no clinical methods to diagnose or monitor prognosis in presumed patients, limiting clinicians' efforts to symptom management. The lack of diagnostic tools fuels the need for biomedical engineers to develop techniques for in vivo detection of CTE. This review examines efforts made with various magnetic resonance and nuclear imaging techniques, with a view towards improving the sensitivity and specificity of diagnostic imaging for CTE.

  7. Model control of image processing for telerobotics and biomedical instrumentation

    Science.gov (United States)

    Nguyen, An Huu

    1993-06-01

    This thesis has model control of image processing (MCIP) as its major theme. By this it is meant that there is a top-down model approach which already knows the structure of the image to be processed. This top-down image processing under model control is used further as visual feedback to control robots and as feedforward information for biomedical instrumentation. The software engineering of the bioengineering instrumentation image processing is defined in terms of the task and the tools available. Early bottom-up image processing such as thresholding occurs only within the top-down control regions of interest (ROI's) or operating windows. Moment computation is an important bottom-up procedure as well as pyramiding to attain rapid computation, among other considerations in attaining programming efficiencies. A distinction is made between initialization procedures and stripped down run time operations. Even more detailed engineering design considerations are considered with respect to the ellipsoidal modeling of objects. Here the major axis orientation is an important additional piece of information, beyond the centroid moments. Careful analysis of various sources of errors and considerable benchmarking characterized the detailed considerations of the software engineering of the image processing procedures. Image processing for robotic control involves a great deal of 3D calibration of the robot working environment (RWE). Of special interest is the idea of adapting the machine scanpath to the current task. It was important to pay careful attention to the hardware aspects of the control of the toy robots that were used to demonstrate the general methodology. It was necessary to precalibrate the open loop gains for all motors so that after initialization the visual feedback, which depends on MCIP, would be able to supply enough information quickly enough to the control algorithms to govern the robots under a variety of control configurations and task operations

  8. Signal and image analysis for biomedical and life sciences

    CERN Document Server

    Sun, Changming; Pham, Tuan D; Vallotton, Pascal; Wang, Dadong

    2014-01-01

    With an emphasis on applications of computational models for solving modern challenging problems in biomedical and life sciences, this book aims to bring collections of articles from biologists, medical/biomedical and health science researchers together with computational scientists to focus on problems at the frontier of biomedical and life sciences. The goals of this book are to build interactions of scientists across several disciplines and to help industrial users apply advanced computational techniques for solving practical biomedical and life science problems. This book is for users in t

  9. A Complete Public Archive for the Einstein Imaging Proportional Counter

    Science.gov (United States)

    Helfand, David J.

    1996-01-01

    Consistent with our proposal to the Astrophysics Data Program in 1992, we have completed the design, construction, documentation, and distribution of a flexible and complete archive of the data collected by the Einstein Imaging Proportional Counter. Along with software and data delivered to the High Energy Astrophysics Science Archive Research Center at Goddard Space Flight Center, we have compiled and, where appropriate, published catalogs of point sources, soft sources, hard sources, extended sources, and transient flares detected in the database along with extensive analyses of the instrument's backgrounds and other anomalies. We include in this document a brief summary of the archive's functionality, a description of the scientific catalogs and other results, a bibliography of publications supported in whole or in part under this contract, and a list of personnel whose pre- and post-doctoral education consisted in part in participation in this project.

  10. Towards A Colorimetric Digital Image Archive For The Visual Arts

    Science.gov (United States)

    Martinez, Kirk; Hamber, Anthony

    1989-04-01

    The aim of this project is to produce a high-resolution, colorimetric and permanent digital archive of images taken directly from works of art. The proposed system is designed for use in education, research, galleries and museums. Tentative user requirements are examined with particular reference to resolution, image access and colorimetry. Existing technology and projects are considered. Some 3000x3000 pel images of paintings are used to illustrate the interrelationship between dimensions of the original, its inherent detail, scan resolution and display.

  11. Using a patient image archive to diagnose retinopathy

    Energy Technology Data Exchange (ETDEWEB)

    Tobin Jr, Kenneth William [ORNL; Abramoff, M.D. [University of Iowa; Chaum, Edward [University of Tennessee, Knoxville (UTK); Giancardo, Luca [ORNL; Govindaswamy, Priya [Oak Ridge National Laboratory (ORNL); Karnowski, Thomas Paul [ORNL; Tennant, M [University of Alberta; Swainson, Stephen [University of Alberta

    2008-01-01

    Diabetes has become an epidemic that is expected to impact 365 million people worldwide by 2025. Consequently, diabetic retinopathy is the leading cause of blindness in the industrialized world today. If detected early, treatments can preserve vision and significantly reduce debilitating blindness. Through this research we are developing and testing a method for automating the diagnosis of retinopathy in a screening environment using a patient archive and digital fundus imagery. We present an overview of our content-based image retrieval (CBIR) approach and provide performance results for a dataset of 98 images from a study in Canada when compared to an archive of 1,355 patients from a study in the Netherlands. An aggregate performance of 89% correct diagnosis is achieved, demonstrating the potential of automated, web-based diagnosis for a broad range of imagery collected under different conditions and with different cameras.

  12. Archiving of line-drawing images

    Science.gov (United States)

    Tue, S. J.; Chiang, John Y.

    1995-11-01

    Lines and junctions are principal features for a line image. The spatial relationships established among them are usually employed in applications such as OCR and architectural blueprint vectorization. The conventional thinning techniques often suffered the pitfall of spurious junction points that are crucial features to derive. The liability of the shape of the skeleton resulting from multiple fork points connected through several short branches will impeded the further recognition stage. In this paper, a new approach which differentiates from the conventional thinning algorithm in vectorizing a raster line image is presented. This vectorization algorithm takes the ensemble of pixels within the line segments collectively as legitimate candidates in deciding the vectorized representation. This method can not only segment the lines and junctions but also construct their spatial relationships. A maximal inscribing circle (MIC) concept is introduced to derive the directions of line segments. An iterative procedure is developed to identify each line segment and the corresponding junctions. Experimental studies comparing the performance of a conventional thinning method with that of our MIC algorithm are performed using the flow diagram and logical diagram as test images. The results demonstrate that our approach is computation efficient, robust and may render optimal multi-pixel-width vectorized line representation at user's discretion.

  13. Image registration and fusion via picture archiving and communication system

    International Nuclear Information System (INIS)

    Gu Zhaoxiang; Jiang Maosong

    2002-01-01

    Objective: The preliminary studies of the multimodality image registration and fusion were performed using picture archiving and communication system (PACS) and image fusion software to explore the methodology. Methods: The original image volume data were acquired with Siemens Somatom Plus S CT scanner, Magneton Vision 1.5 T MR and E. CAM + dual-head coincidence SPECT, respectively. The data sets from all imaging devices were acquired, retrieved, transferred and accessed via DICOM PACS. The image fusion was performed at SPECT ICON work-station, where the medical image merge (MIM) fusion software was installed. The images were created by re-slicing original volume on the fly. The image volumes were aligned by translation and rotation of these view ports with respect to the original volume orientation. The transparency factor and contrast were adjusted in order that both volumes can be visualized in the merged images. Results: The image volume data of CT, MR and nuclear medicine were transferred, accessed and loaded via PACS successfully. The perfectly fused images of brain MR/SPECT and chest CT/ 18 F-FDG were obtained. Conclusions: The results showed that the image fusion technique using PACS was feasible and practical. Further experimentation and larger validation studies are needed to explore the full potential of the clinical use

  14. DICOM-compliant PACS with CD-based image archival

    Science.gov (United States)

    Cox, Robert D.; Henri, Christopher J.; Rubin, Richard K.; Bret, Patrice M.

    1998-07-01

    This paper describes the design and implementation of a low- cost PACS conforming to the DICOM 3.0 standard. The goal was to provide an efficient image archival and management solution on a heterogeneous hospital network as a basis for filmless radiology. The system follows a distributed, client/server model and was implemented at a fraction of the cost of a commercial PACS. It provides reliable archiving on recordable CD and allows access to digital images throughout the hospital and on the Internet. Dedicated servers have been designed for short-term storage, CD-based archival, data retrieval and remote data access or teleradiology. The short-term storage devices provide DICOM storage and query/retrieve services to scanners and workstations and approximately twelve weeks of 'on-line' image data. The CD-based archival and data retrieval processes are fully automated with the exception of CD loading and unloading. The system employs lossless compression on both short- and long-term storage devices. All servers communicate via the DICOM protocol in conjunction with both local and 'master' SQL-patient databases. Records are transferred from the local to the master database independently, ensuring that storage devices will still function if the master database server cannot be reached. The system features rules-based work-flow management and WWW servers to provide multi-platform remote data access. The WWW server system is distributed on the storage, retrieval and teleradiology servers allowing viewing of locally stored image data directly in a WWW browser without the need for data transfer to a central WWW server. An independent system monitors disk usage, processes, network and CPU load on each server and reports errors to the image management team via email. The PACS was implemented using a combination of off-the-shelf hardware, freely available software and applications developed in-house. The system has enabled filmless operation in CT, MR and ultrasound within

  15. Interactive Processing and Visualization of Image Data forBiomedical and Life Science Applications

    Energy Technology Data Exchange (ETDEWEB)

    Staadt, Oliver G.; Natarjan, Vijay; Weber, Gunther H.; Wiley,David F.; Hamann, Bernd

    2007-02-01

    Background: Applications in biomedical science and life science produce large data sets using increasingly powerful imaging devices and computer simulations. It is becoming increasingly difficult for scientists to explore and analyze these data using traditional tools. Interactive data processing and visualization tools can support scientists to overcome these limitations. Results: We show that new data processing tools and visualization systems can be used successfully in biomedical and life science applications. We present an adaptive high-resolution display system suitable for biomedical image data, algorithms for analyzing and visualization protein surfaces and retinal optical coherence tomography data, and visualization tools for 3D gene expression data. Conclusion: We demonstrated that interactive processing and visualization methods and systems can support scientists in a variety of biomedical and life science application areas concerned with massive data analysis.

  16. Collaborative Initiative in Biomedical Imaging to Study Complex Diseases

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Weili [The University of North Carolina at Chapel Hill; Fiddy, Michael A. [The University of North Carolina at Charlotte

    2012-03-31

    The work reported addressed these topics: Fluorescence imaging; Optical coherence tomography; X-ray interferometer/phase imaging system; Quantitative imaging from scattered fields, Terahertz imaging and spectroscopy; and Multiphoton and Raman microscopy.

  17. A review of microwave-induced thermoacoustic imaging: Excitation source, data acquisition system and biomedical applications

    Directory of Open Access Journals (Sweden)

    Yongsheng Cui

    2017-07-01

    Full Text Available Microwave-induced thermoacoustic imaging (TAI is a noninvasive modality based on the differences in microwave absorption of various biological tissues. TAI has been extensively researched in recent years, and several studies have revealed that TAI possesses advantages such as high resolution, high contrast, high imaging depth and fast imaging speed. In this paper, we reviewed the development of the TAI technique, its excitation source, data acquisition system and biomedical applications. It is believed that TAI has great potential applications in biomedical research and clinical study.

  18. Expert Images for All Audiences: The AstroPix Archive

    Science.gov (United States)

    Hurt, Robert; Llamas, Jacob; Wyatt, Ryan Jason; Christensen, Lars

    2018-01-01

    The AstroPix project provides one-stop-shopping for an extensive collection of the finest astronomical imagery, sourced from some of the world’s most prominent observatories. The archive is made possible by a grassroots effort to tag publicly-released imagery using the Astronomical Visualization Metadata (AVM) standard, which captures rich contextual information for each image. While the site has been in development for many years, it is now supported under NASA’s Universe of Learning collaboration, and AstroPix has been updated and deployed to cloud services. The AVM tags provide many unique features including spectral color assignments, sky context (using AAS WorldWide Telescope APIs), and direct links to the original source material on the web. The 7,000+ assets currently include imagery provided by Chandra, ESO, GALEX, Herschel, Hubble, NuSTAR, Spitzer, and WISE. The assets are also provided for use in the planetarium community by supporting the Data2Dome (D2D) initiative. AstroPix imagery is designed to be used in a variety of unique ways that benefit formal and informal education as well as astronomers and the general public. Observatories can add their own image archives to AstroPix by tagging their assets and providing a simple XML feed, increasing the value of their data to the community at large.

  19. New software developments for quality mesh generation and optimization from biomedical imaging data.

    Science.gov (United States)

    Yu, Zeyun; Wang, Jun; Gao, Zhanheng; Xu, Ming; Hoshijima, Masahiko

    2014-01-01

    In this paper we present a new software toolkit for generating and optimizing surface and volumetric meshes from three-dimensional (3D) biomedical imaging data, targeted at image-based finite element analysis of some biomedical activities in a single material domain. Our toolkit includes a series of geometric processing algorithms including surface re-meshing and quality-guaranteed tetrahedral mesh generation and optimization. All methods described have been encapsulated into a user-friendly graphical interface for easy manipulation and informative visualization of biomedical images and mesh models. Numerous examples are presented to demonstrate the effectiveness and efficiency of the described methods and toolkit. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

  20. Bio-medical X-ray imaging with spectroscopic pixel detectors

    CERN Document Server

    Butler, A P H; Tipples, R; Cook, N; Watts, R; Meyer, J; Bell, A J; Melzer, T R; Butler, P H

    2008-01-01

    The aim of this study is to review the clinical potential of spectroscopic X-ray detectors and to undertake a feasibility study using a novel detector in a clinical hospital setting. Detectors currently in development, such as Medipix-3, will have multiple energy thresholds allowing for routine use of spectroscopic bio-medical imaging. We have coined the term MARS (Medipix All Resolution System) for bio-medical images that provide spatial, temporal, and energy information. The full clinical significance of spectroscopic X-ray imaging is difficult to predict but insights can be gained by examining both image reconstruction artifacts and the current uses of dual-energy techniques. This paper reviews the known uses of energy information in vascular imaging and mammography, clinically important fields. It then presents initial results from using Medipix-2, to image human tissues within a clinical radiology department. Detectors currently in development, such as Medipix-3, will have multiple energy thresholds allo...

  1. Advances in biomedical signal and image processing – A systematic review

    Directory of Open Access Journals (Sweden)

    J. Rajeswari

    Full Text Available Biomedical signal and image processing establish a dynamic area of specialization in both academic as well as research aspects of biomedical engineering. The concepts of signal and image processing have been widely used for extracting the physiological information in implementing many clinical procedures for sophisticated medical practices and applications. In this paper, the relationship between electrophysiological signals, i.e., electrocardiogram (ECG, electromyogram (EMG, electroencephalogram (EEG and functional image processing and their derived interactions have been discussed. Examples have been investigated in various case studies such as neurosciences, functional imaging, and cardiovascular system, by using different algorithms and methods. The interaction between the extracted information obtained from multiple signals and modalities seems to be very promising. The advanced algorithms and methods in the area of information retrieval based on time-frequency representation have been investigated. Finally, some examples of algorithms have been discussed in which the electrophysiological signals and functional images have been properly extracted and have a significant impact on various biomedical applications. Keywords: Biomedical signals and images, Processing, Analysis

  2. Biomedical image analysis recipes in Matlab for life scientists and engineers

    CERN Document Server

    Reyes-Aldasoro, Constantino Carlos

    2015-01-01

    As its title suggests, this innovative book has been written for life scientists needing to analyse their data sets, and programmers, wanting a better understanding of the types of experimental images life scientists investigate on a regular basis. Each chapter presents one self-contained biomedical experiment to be analysed. Part I of the book presents its two basic ingredients: essential concepts of image analysis and Matlab. In Part II, algorithms and techniques are shown as series of 'recipes' or solved examples that show how specific techniques are applied to a biomedical experiments like

  3. Filled carbon nanotubes in biomedical imaging and drug delivery.

    Science.gov (United States)

    Martincic, Markus; Tobias, Gerard

    2015-04-01

    Carbon nanotubes have been advocated as promising candidates in the biomedical field in the areas of diagnosis and therapy. In terms of drug delivery, the use of carbon nanotubes can overcome some limitations of 'free' drugs by improving the formulation of poorly water-soluble drugs, allowing targeted delivery and even enabling the co-delivery of two or more drugs for combination therapy. Two different approaches are currently being explored for the delivery of diagnostic and therapeutic agents by carbon nanotubes, namely attachment of the payload to the external sidewalls or encapsulation into the inner cavities. Although less explored, the latter confers additional stability to the chosen diagnostic or therapeutic agents, and leaves the backbone structure of the nanotubes available for its functionalization with dispersing and targeting moieties. Several drug delivery systems and diagnostic agents have been developed in the last years employing the inner tubular cavities of carbon nanotubes. The research discussed in this review focuses on the use of carbon nanotubes that contain in their interior drug molecules and diagnosis-related compounds. The approaches employed for the development of such nanoscale vehicles along with targeting and releasing strategies are discussed. The encapsulation of both biomedical contrast agents and drugs inside carbon nanotubes is further expanding the possibilities to allow an early diagnosis and treatment of diseases.

  4. Image files of PCR data plotted on the FACS profiles - Plabrain DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Plabrain DB Image files of PCR data plotted on the FACS profiles Data detail Data name Image files of PCR data plotte...s FACS-based single-cell PCR data was plotted on the FACS profile, in which cells are sorted by DNA content ...d License Update History of This Database Site Policy | Contact Us Image files of PCR data plotted on the FACS profiles - Plabrain DB | LSDB Archive ...

  5. Upconversion nanoparticles and their composite nanostructures for biomedical imaging and cancer therapy

    Science.gov (United States)

    Cheng, Liang; Wang, Chao; Liu, Zhuang

    2012-12-01

    Upconversion nanoparticles (UCNPs), particularly lanthanide-doped nanocrystals, which emit high energy photons under excitation by the near-infrared (NIR) light, have found potential applications in many different fields, including biomedicine. Compared with traditional down-conversion fluorescence imaging, the NIR light excited upconversion luminescence (UCL) imaging relying on UCNPs exhibits improved tissue penetration depth, higher photochemical stability, and is free of auto-fluorescence background, which promises biomedical imaging with high sensitivity. On the other hand, the unique upconversion process of UCNPs may be utilized to activate photosensitive therapeutic agents for applications in cancer treatment. Moreover, the integration of UCNPs with other functional nanostructures could result in the obtained nanocomposites having highly enriched functionalities, useful in imaging-guided cancer therapies. This review article will focus on the biomedical imaging and cancer therapy applications of UCNPs and their nanocomposites, and discuss recent advances and future prospects in this emerging field.

  6. Biomedical applications of nanodiamonds in imaging and therapy.

    Science.gov (United States)

    Perevedentseva, Elena; Lin, Yu-Chung; Jani, Mona; Cheng, Chia-Liang

    2013-12-01

    Nanodiamonds have attracted remarkable scientific attention for bioimaging and therapeutic applications owing to their low toxicity with many cell lines, convenient surface properties and stable fluorescence without photobleaching. Newer techniques are being applied to enhance fluorescence. Interest is also growing in exploring the possibilities for modifying the nanodiamond surface and functionalities by attaching various biomolecules of interest for interaction with the targets. The potential of Raman spectroscopy and fluorescence properties of nanodiamonds has been explored for bioimaging and drug delivery tracing. The interest in nanodiamonds' biological/medical application appears to be continuing with enhanced focus. In this review an attempt is made to capture the scope, spirit and recent developments in the field of nanodiamonds for biomedical applications.

  7. [Nondestructive imaging of elements distribution in biomedical samples by X-ray fluorescence computed tomography].

    Science.gov (United States)

    Yang, Qun; Deng, Biao; Lü, Wei-Wei; Du, Guo-Hao; Yan, Fu-Hua; Xiao, Ti-Qiao; Xu, Hong-Jie

    2011-10-01

    X-ray fluorescence computed tomography is a stimulated emission tomography that allows nondestructive reconstruction of the elements distribution in the sample, which is important for biomedical investigations. Owing to the high flux density and easy energy tunability of highly collimated synchrotron X-rays, it is possible to apply X-ray fluorescence CT to biomedical samples. Reported in the present paper, an X-ray fluorescence CT system was established at Shanghai Synchrotron Radiation Facility for the investigations of trace elements distribution inside biomedical samples. By optimizing the experiment setup, the spatial resolution was improved and the data acquisition process was obviously speeded up. The maximum-likelihood expectation-maximization algorithm was introduced for the image reconstruction, which remarkably improved the imaging accuracy of element distributions. The developed system was verified by the test sample and medical sample respectively. The results showed that the distribution of interested elements could be imaged correctly, and the spatial resolution of 150 m was achieved. In conclusion, the developed system could be applied to the research on large-size biomedical samples, concerning imaging accuracy, spatial resolution and data collection time.

  8. Endovascular Device Testing with Particle Image Velocimetry Enhances Undergraduate Biomedical Engineering Education

    Science.gov (United States)

    Nair, Priya; Ankeny, Casey J.; Ryan, Justin; Okcay, Murat; Frakes, David H.

    2016-01-01

    We investigated the use of a new system, HemoFlow™, which utilizes state of the art technologies such as particle image velocimetry to test endovascular devices as part of an undergraduate biomedical engineering curriculum. Students deployed an endovascular stent into an anatomical model of a cerebral aneurysm and measured intra-aneurysmal flow…

  9. Molecular mass spectrometry imaging in biomedical and life science research

    Czech Academy of Sciences Publication Activity Database

    Pól, Jaroslav; Strohalm, Martin; Havlíček, Vladimír; Volný, Michael

    2010-01-01

    Roč. 134, č. 5 (2010), s. 423-443 ISSN 0948-6143 R&D Projects: GA MŠk LC545; GA ČR GPP206/10/P018 Institutional research plan: CEZ:AV0Z50200510 Keywords : Mass spectrometry * Chemical imaging * Molecular imaging Subject RIV: EE - Microbiology, Virology Impact factor: 4.727, year: 2010

  10. Advanced Contrast Agents for Multimodal Biomedical Imaging Based on Nanotechnology.

    Science.gov (United States)

    Calle, Daniel; Ballesteros, Paloma; Cerdán, Sebastián

    2018-01-01

    Clinical imaging modalities have reached a prominent role in medical diagnosis and patient management in the last decades. Different image methodologies as Positron Emission Tomography, Single Photon Emission Tomography, X-Rays, or Magnetic Resonance Imaging are in continuous evolution to satisfy the increasing demands of current medical diagnosis. Progress in these methodologies has been favored by the parallel development of increasingly more powerful contrast agents. These are molecules that enhance the intrinsic contrast of the images in the tissues where they accumulate, revealing noninvasively the presence of characteristic molecular targets or differential physiopathological microenvironments. The contrast agent field is currently moving to improve the performance of these molecules by incorporating the advantages that modern nanotechnology offers. These include, mainly, the possibilities to combine imaging and therapeutic capabilities over the same theranostic platform or improve the targeting efficiency in vivo by molecular engineering of the nanostructures. In this review, we provide an introduction to multimodal imaging methods in biomedicine, the sub-nanometric imaging agents previously used and the development of advanced multimodal and theranostic imaging agents based in nanotechnology. We conclude providing some illustrative examples from our own laboratories, including recent progress in theranostic formulations of magnetoliposomes containing ω-3 poly-unsaturated fatty acids to treat inflammatory diseases, or the use of stealth liposomes engineered with a pH-sensitive nanovalve to release their cargo specifically in the acidic extracellular pH microenvironment of tumors.

  11. A software package for biomedical image processing and analysis

    International Nuclear Information System (INIS)

    Goncalves, J.G.M.; Mealha, O.

    1988-01-01

    The decreasing cost of computing power and the introduction of low cost imaging boards justifies the increasing number of applications of digital image processing techniques in the area of biomedicine. There is however a large software gap to be fulfilled, between the application and the equipment. The requirements to bridge this gap are twofold: good knowledge of the hardware provided and its interface to the host computer, and expertise in digital image processing and analysis techniques. A software package incorporating these two requirements was developed using the C programming language, in order to create a user friendly image processing programming environment. The software package can be considered in two different ways: as a data structure adapted to image processing and analysis, which acts as the backbone and the standard of communication for all the software; and as a set of routines implementing the basic algorithms used in image processing and analysis. Hardware dependency is restricted to a single module upon which all hardware calls are based. The data structure that was built has four main features: hierchical, open, object oriented, and object dependent dimensions. Considering the vast amount of memory needed by imaging applications and the memory available in small imaging systems, an effective image memory management scheme was implemented. This software package is being used for more than one and a half years by users with different applications. It proved to be an excellent tool for helping people to get adapted into the system, and for standardizing and exchanging software, yet preserving flexibility allowing for users' specific implementations. The philosophy of the software package is discussed and the data structure that was built is described in detail

  12. Melanin-Based Contrast Agents for Biomedical Optoacoustic Imaging and Theranostic Applications.

    Science.gov (United States)

    Longo, Dario Livio; Stefania, Rachele; Aime, Silvio; Oraevsky, Alexander

    2017-08-07

    Optoacoustic imaging emerged in early 1990s as a new biomedical imaging technology that generates images by illuminating tissues with short laser pulses and detecting resulting ultrasound waves. This technique takes advantage of the spectroscopic approach to molecular imaging, and delivers high-resolution images in the depth of tissue. Resolution of the optoacoustic imaging is scalable, so that biomedical systems from cellular organelles to large organs can be visualized and, more importantly, characterized based on their optical absorption coefficient, which is proportional to the concentration of absorbing chromophores. Optoacoustic imaging was shown to be useful in both preclinical research using small animal models and in clinical applications. Applications in the field of molecular imaging offer abundant opportunities for the development of highly specific and effective contrast agents for quantitative optoacoustic imaging. Recent efforts are being made in the direction of nontoxic biodegradable contrast agents (such as nanoparticles made of melanin) that are potentially applicable in clinical optoacoustic imaging. In order to increase the efficiency and specificity of contrast agents and probes, they need to be made smart and capable of controlled accumulation in the target cells. This review was written in recognition of the potential breakthroughs in medical optoacoustic imaging that can be enabled by efficient and nontoxic melanin-based optoacoustic contrast agents.

  13. Controlled searching in reversibly de-identified medical imaging archives.

    Science.gov (United States)

    Silva, Jorge Miguel; Pinho, Eduardo; Monteiro, Eriksson; Silva, João Figueira; Costa, Carlos

    2018-01-01

    Nowadays, digital medical imaging in healthcare has become a fundamental tool for medical diagnosis. This growth has been accompanied by the development of technologies and standards, such as the DICOM standard and PACS. This environment led to the creation of collaborative projects where there is a need to share medical data between different institutions for research and educational purposes. In this context, it is necessary to maintain patient data privacy and provide an easy and secure mechanism for authorized personnel access. This paper presents a solution that fully de-identifies standard medical imaging objects, including metadata and pixel data, providing at the same time a reversible de-identifier mechanism that retains search capabilities from the original data. The last feature is important in some scenarios, for instance, in collaborative platforms where data is anonymized when shared with the community but searchable for data custodians or authorized entities. The solution was integrated into an open source PACS archive and validated in a multidisciplinary collaborative scenario. Copyright © 2017 Elsevier Inc. All rights reserved.

  14. Biocompatible astaxanthin as novel contrast agent for biomedical imaging.

    Science.gov (United States)

    Nguyen, Van Phuc; Park, Suhyun; Oh, Junghwan; Wook Kang, Hyun

    2017-08-01

    Photoacoustic imaging (PAI) is a hybrid imaging modality with high resolution and sensitivity that can be beneficial for cancer staging. Due to insufficient endogenous photoacoustic (PA) contrast, the development of exogenous agents is critical in targeting cancerous tumors. The current study demonstrates the feasibility of marine-oriented material, astaxanthin, as a biocompatible PA contrast agent. Both silicon tubing phantoms and ex vivo bladder tissues are tested at various concentrations (up to 5 mg/ml) of astaxanthin to quantitatively explore variations in PA responses. A Q-switched Nd : YAG laser (λ = 532 nm) in conjunction with a 5 MHz ultrasound transducer is employed to generate and acquire PA signals from the samples. The phantom results presented that the PA signal amplitudes increase linearly with the astaxanthin concentrations (threshold detection = 0.31 mg/ml). The tissue injected with astaxanthin yields up to 16-fold higher PA signals, compared with that with saline. Due to distribution of the injected astaxanthin, PAI can image the margin of astaxanthin boles as well as quantify their volume in 3D reconstruction. Further investigations on selective tumor targeting are required to validate astaxanthin as a potential biocompatible contrast agent for PAI-assisted bladder cancer detection. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  15. Annotating image ROIs with text descriptions for multimodal biomedical document retrieval

    Science.gov (United States)

    You, Daekeun; Simpson, Matthew; Antani, Sameer; Demner-Fushman, Dina; Thoma, George R.

    2013-01-01

    Regions of interest (ROIs) that are pointed to by overlaid markers (arrows, asterisks, etc.) in biomedical images are expected to contain more important and relevant information than other regions for biomedical article indexing and retrieval. We have developed several algorithms that localize and extract the ROIs by recognizing markers on images. Cropped ROIs then need to be annotated with contents describing them best. In most cases accurate textual descriptions of the ROIs can be found from figure captions, and these need to be combined with image ROIs for annotation. The annotated ROIs can then be used to, for example, train classifiers that separate ROIs into known categories (medical concepts), or to build visual ontologies, for indexing and retrieval of biomedical articles. We propose an algorithm that pairs visual and textual ROIs that are extracted from images and figure captions, respectively. This algorithm based on dynamic time warping (DTW) clusters recognized pointers into groups, each of which contains pointers with identical visual properties (shape, size, color, etc.). Then a rule-based matching algorithm finds the best matching group for each textual ROI mention. Our method yields a precision and recall of 96% and 79%, respectively, when ground truth textual ROI data is used.

  16. A flexible image archiving system using a personal computer and optical disk

    International Nuclear Information System (INIS)

    Parkin, A.; Norwood, H.; Hall, A.J.

    1989-01-01

    The authors describe the application of a personal computer and optical disk as an image archiving device, which brings the advantages of large capacity, low cost and savings on storage space. (author)

  17. An efficient sampling algorithm for uncertain abnormal data detection in biomedical image processing and disease prediction.

    Science.gov (United States)

    Liu, Fei; Zhang, Xi; Jia, Yan

    2015-01-01

    In this paper, we propose a computer information processing algorithm that can be used for biomedical image processing and disease prediction. A biomedical image is considered a data object in a multi-dimensional space. Each dimension is a feature that can be used for disease diagnosis. We introduce a new concept of the top (k1,k2) outlier. It can be used to detect abnormal data objects in the multi-dimensional space. This technique focuses on uncertain space, where each data object has several possible instances with distinct probabilities. We design an efficient sampling algorithm for the top (k1,k2) outlier in uncertain space. Some improvement techniques are used for acceleration. Experiments show our methods' high accuracy and high efficiency.

  18. PACS image archive server implementation in the developing countries such as China

    Science.gov (United States)

    Zhang, Dong; Shu, Yunhong; Zhuang, Tian-ge

    2000-05-01

    While Picture Archiving and Communicating System project is underway through out the western countries, China is making a revolutionary advance in digital medical record. Hospitals in China have made their first steps toward implementation of PACS. Due to the ever-increasing amount of medical image data, a completed archive server is of great need as the base of filmless radiology, a cost effective, high performance digital archive system will remain as the most essential and challenging part of PACS. However there is an inevitable and inherent dilemma in those hospitals in the developing countries like China -- limited amount of development funds. So we are urged to design a low cost but efficient image archive system to cater to the expectation of the hospital. This paper describes a high capacity PACS image archive system model that is developed with rather low cost. To build a reliable and flexible image archive system involves a number of factors such as system capacity requirement, storage and retrieval performance and cost saving etc. We have undertaken the hierarchy image storage mechanism. Judicious image dispatch is employed to meet the goal of timely image retrieval. The whole design can be divided into two parts, one is Scheduled Image Flow Service (SIFS) whose purpose is to periodically backup, archive and pre-fetch image, the other one is Online Image Retrieval Service (OIRS) to provide quick access to the online and nearline images through the network interface. Automatic image transfer is realized between different storage tiers with high level of control. All the procedure is highly automatic except the manually depositing and undepositing off-line optical disks. System evaluations on random retrieval time are presented to show the effect of image location. The concept of image tiered storage will largely reduce the cost of storage. Real-time response to the retrieval demand can send wanted images to a radiologist in a reasonable time. We have done

  19. Design considerations for a neuroradiologic picture archival and image processing workstation

    International Nuclear Information System (INIS)

    Fishbein, D.S.

    1986-01-01

    The design and implementation of a small scale image archival and processing workstation for use in the study of digitized neuroradiologic images is described. The system is designed to be easily interfaced to existing equipment (presently PET, NMR and CT), function independent of a central file server, and provide for a versatile image processing environment. (Auth.)

  20. Morphological image processing for quantitative shape analysis of biomedical structures: effective contrast enhancement

    International Nuclear Information System (INIS)

    Kimori, Yoshitaka

    2013-01-01

    A contrast enhancement approach utilizing a new type of mathematical morphology called rotational morphological processing is introduced. The method is quantitatively evaluated and then applied to some medical images. Image processing methods significantly contribute to visualization of images captured by biomedical modalities (such as mammography, X-ray computed tomography, magnetic resonance imaging, and light and electron microscopy). Quantitative interpretation of the deluge of complicated biomedical images, however, poses many research challenges, one of which is to enhance structural features that are scarcely perceptible to the human eye. This study introduces a contrast enhancement approach based on a new type of mathematical morphology called rotational morphological processing. The proposed method is applied to medical images for the enhancement of structural features. The effectiveness of the method is evaluated quantitatively by the contrast improvement ratio (CIR). The CIR of the proposed method is 12.1, versus 4.7 and 0.1 for two conventional contrast enhancement methods, clearly indicating the high contrasting capability of the method

  1. Morphological image processing for quantitative shape analysis of biomedical structures: effective contrast enhancement

    Energy Technology Data Exchange (ETDEWEB)

    Kimori, Yoshitaka, E-mail: kimori@orion.ac.jp [National Institutes of Natural Sciences, 5-1 Higashiyama, Myodaiji, Okazaki, Aichi 444-8787 (Japan)

    2013-11-01

    A contrast enhancement approach utilizing a new type of mathematical morphology called rotational morphological processing is introduced. The method is quantitatively evaluated and then applied to some medical images. Image processing methods significantly contribute to visualization of images captured by biomedical modalities (such as mammography, X-ray computed tomography, magnetic resonance imaging, and light and electron microscopy). Quantitative interpretation of the deluge of complicated biomedical images, however, poses many research challenges, one of which is to enhance structural features that are scarcely perceptible to the human eye. This study introduces a contrast enhancement approach based on a new type of mathematical morphology called rotational morphological processing. The proposed method is applied to medical images for the enhancement of structural features. The effectiveness of the method is evaluated quantitatively by the contrast improvement ratio (CIR). The CIR of the proposed method is 12.1, versus 4.7 and 0.1 for two conventional contrast enhancement methods, clearly indicating the high contrasting capability of the method.

  2. Medical imaging education in biomedical engineering curriculum: courseware development and application through a hybrid teaching model.

    Science.gov (United States)

    Zhao, Weizhao; Li, Xiping; Chen, Hairong; Manns, Fabrice

    2012-01-01

    Medical Imaging is a key training component in Biomedical Engineering programs. Medical imaging education is interdisciplinary training, involving physics, mathematics, chemistry, electrical engineering, computer engineering, and applications in biology and medicine. Seeking an efficient teaching method for instructors and an effective learning environment for students has long been a goal for medical imaging education. By the support of NSF grants, we developed the medical imaging teaching software (MITS) and associated dynamic assessment tracking system (DATS). The MITS/DATS system has been applied to junior and senior medical imaging classes through a hybrid teaching model. The results show that student's learning gain improved, particularly in concept understanding and simulation project completion. The results also indicate disparities in subjective perception between junior and senior classes. Three institutions are collaborating to expand the courseware system and plan to apply it to different class settings.

  3. Fabrication of a small animal restraint for synchrotron biomedical imaging using a rapid prototyper

    International Nuclear Information System (INIS)

    Zhu Ying; Zhang Honglin; McCrea, Richard; Bewer, Brian; Wiebe, Sheldon; Nichol, Helen; Ryan, Christopher; Wysokinski, Tomasz; Chapman, Dean

    2007-01-01

    Biomedical research at synchrotron facilities may involve imaging live animals that must remain motionless for extended periods of time to obtain quality images. Even breathing movements reduce image quality but on the other hand excessive restraint of animals increases morbidity and mortality. We describe a humane animal restraint designed to eliminate head movements while promoting animal survival. This paper describes how an animal restraint that conforms to the shape of an animal's head was fabricated by a 3D prototyper. The method used to translate medical computed tomography (CT) data to a 3D stereolithography format is described and images of its use at the Canadian Light Source (CLS) are shown. This type of restraint holds great promise in improving image quality and repeatability while reducing stress on experimental animals

  4. 3D UWB Magnitude-Combined Tomographic Imaging for Biomedical Applications. Algorithm Validation

    Directory of Open Access Journals (Sweden)

    S. Capdevila

    2011-06-01

    Full Text Available Biomedical microwave imaging is a topic of continuous research for its potential in different areas especially in breast cancer detection. In this paper, 3D UWB Magnitude-Combined tomographic algorithm is assessed for this recurrent application, but also for a more challenging one such as brain stroke detection. With the UWB Magnitude-Combined concept, the algorithm can take advantage of both the efficiency of Fourier Diffraction Theorem-based tomographic formulation and the robustness and image quality improvement provided by a multi-frequency combination.

  5. Distributed architecture for image archival in a hospital-wide PACS

    Science.gov (United States)

    Ratib, Osman M.; Ligier, Yves; Funk, Matthieu; Vurlod, Jean-Francois; Trayser, Gerhard; Scherrer, Jean-Raoul

    1992-07-01

    A hospital-wide PACS project is currently under development at the University Hospital of Geneva. This system is based on an open architecture regrouping equipment from multiple vendors in a distributed topology. The image archival is organized in multiple locations geographically distributed in the hospital. These regional archives are logically linked together to provide a virtual access to all images generated from different imaging modalities. A standardized image storage format called PAPYRUS was designed based on ACR-NEMA definitions to unify the image storage and display functionalities. The PACS database is also fully integrated with the concurrent RIS and HIS. Images from different archive servers are hierarchically distributed to other temporary storage space on regional display servers. Clusters of workstations are regrouped around these local servers allowing a more efficient access to the images on local subnetworks. Special software tools were designed for the management of image distribution and maintenance of local storage space. In addition to pre- programmed and rule-based distribution of images to regional display servers, special requests can be posted by the users to initiate the transfer of additional image files from the archive servers to their local display server. The design and implementation of the system will be presented and methodological issues will be discussed. Results from preliminary simulations performed prior to the final implementation will be presented and compared to real measurements performed on the system in operation. The advantages and difficulties of implementing a distributed hierarchical storage of images will be reported.

  6. Automatic segmentation of subfigure image panels for multimodal biomedical document retrieval

    Science.gov (United States)

    Cheng, Beibei; Antani, Sameer; Stanley, R. Joe; Thoma, George R.

    2011-01-01

    Biomedical images are often referenced for clinical decision support (CDS), educational purposes, and research. The task of automatically finding the images in a scientific article that are most useful for the purpose of determining relevance to a clinical situation is traditionally done using text and is quite challenging. We propose to improve this by associating image features from the entire image and from relevant regions of interest with biomedical concepts described in the figure caption or discussion in the article. However, images used in scientific article figures are often composed of multiple panels where each sub-figure (panel) is referenced in the caption using alphanumeric labels, e.g. Figure 1(a), 2(c), etc. It is necessary to separate individual panels from a multi-panel figure as a first step toward automatic annotation of images. In this work we present methods that add make robust our previous efforts reported here. Specifically, we address the limitation in segmenting figures that do not exhibit explicit inter-panel boundaries, e.g. illustrations, graphs, and charts. We present a novel hybrid clustering algorithm based on particle swarm optimization (PSO) with fuzzy logic controller (FLC) to locate related figure components in such images. Results from our evaluation are very promising with 93.64% panel detection accuracy for regular (non-illustration) figure images and 92.1% accuracy for illustration images. A computational complexity analysis also shows that PSO is an optimal approach with relatively low computation time. The accuracy of separating these two type images is 98.11% and is achieved using decision tree.

  7. A theoretical-experimental methodology for assessing the sensitivity of biomedical spectral imaging platforms, assays, and analysis methods.

    Science.gov (United States)

    Leavesley, Silas J; Sweat, Brenner; Abbott, Caitlyn; Favreau, Peter; Rich, Thomas C

    2018-01-01

    Spectral imaging technologies have been used for many years by the remote sensing community. More recently, these approaches have been applied to biomedical problems, where they have shown great promise. However, biomedical spectral imaging has been complicated by the high variance of biological data and the reduced ability to construct test scenarios with fixed ground truths. Hence, it has been difficult to objectively assess and compare biomedical spectral imaging assays and technologies. Here, we present a standardized methodology that allows assessment of the performance of biomedical spectral imaging equipment, assays, and analysis algorithms. This methodology incorporates real experimental data and a theoretical sensitivity analysis, preserving the variability present in biomedical image data. We demonstrate that this approach can be applied in several ways: to compare the effectiveness of spectral analysis algorithms, to compare the response of different imaging platforms, and to assess the level of target signature required to achieve a desired performance. Results indicate that it is possible to compare even very different hardware platforms using this methodology. Future applications could include a range of optimization tasks, such as maximizing detection sensitivity or acquisition speed, providing high utility for investigators ranging from design engineers to biomedical scientists. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  8. Prototype client/server application for biomedical text/image retrieval on the Internet

    Science.gov (United States)

    Long, L. Rodney; Berman, Lewis E.; Thoma, George R.

    1996-03-01

    At the Lister Hill National Center for Biomedical Communications, a research and development division of the National Library of Medicine (NLM), a prototype image database retrieval system has been built. This medical information retrieval system (MIRS) is a client/server application which provides Internet access to biomedical databases, including both text search/retrieval and retrieval/display of medical images associated with the text records. The MIRS graphical user interface (GUI) allows a user to formulate queries by simple, intuitive interactions with screen buttons, list boxes, and edit boxes; these interactions create structured query language (SQL) queries, which are submitted to a database manager running at NLM. The result of a MIRS query is a display showing both scrollable text records and scrollable images returned for all of the 'hits' of the query. MIRS is designed as an information-delivery vehicle intended to provide access to multiple collections of medical text and image data. The database used for initial MIRS evaluation consists of national survey data collected by the National Center for Health Statistics, including 17,000 spinal x-ray images. This survey, conducted on a sample of 27,801 persons, collected demographic, socioeconomic, and medical information, including both interview results and results acquired by direct examination by physician.

  9. A framework for biomedical figure segmentation towards image-based document retrieval.

    Science.gov (United States)

    Lopez, Luis D; Yu, Jingyi; Arighi, Cecilia; Tudor, Catalina O; Torii, Manabu; Huang, Hongzhan; Vijay-Shanker, K; Wu, Cathy

    2013-01-01

    The figures included in many of the biomedical publications play an important role in understanding the biological experiments and facts described within. Recent studies have shown that it is possible to integrate the information that is extracted from figures in classical document classification and retrieval tasks in order to improve their accuracy. One important observation about the figures included in biomedical publications is that they are often composed of multiple subfigures or panels, each describing different methodologies or results. The use of these multimodal figures is a common practice in bioscience, as experimental results are graphically validated via multiple methodologies or procedures. Thus, for a better use of multimodal figures in document classification or retrieval tasks, as well as for providing the evidence source for derived assertions, it is important to automatically segment multimodal figures into subfigures and panels. This is a challenging task, however, as different panels can contain similar objects (i.e., barcharts and linecharts) with multiple layouts. Also, certain types of biomedical figures are text-heavy (e.g., DNA sequences and protein sequences images) and they differ from traditional images. As a result, classical image segmentation techniques based on low-level image features, such as edges or color, are not directly applicable to robustly partition multimodal figures into single modal panels. In this paper, we describe a robust solution for automatically identifying and segmenting unimodal panels from a multimodal figure. Our framework starts by robustly harvesting figure-caption pairs from biomedical articles. We base our approach on the observation that the document layout can be used to identify encoded figures and figure boundaries within PDF files. Taking into consideration the document layout allows us to correctly extract figures from the PDF document and associate their corresponding caption. We combine pixel

  10. Deformable Registration of Biomedical Images using 2D Hidden Markov Models.

    Science.gov (United States)

    Shenoy, Renuka; Shih, Min-Chi; Rose, Kenneth

    2016-07-18

    Robust registration of unimodal and multimodal images is a key task in biomedical image analysis, and is often utilized as an initial step on which subsequent analysis techniques critically depend. We propose a novel probabilistic framework, based on a variant of the 2D hidden Markov model, namely the turbo hidden Markov model, to capture the deformation between pairs of images. The HMM is tailored to capture spatial transformations across images via state transitions, and modalityspecific data costs via emission probabilities. The method is derived for the unimodal setting (where simpler matching metrics may be used) as well as the multimodal setting, where different modalities may provide very different representations for a given class of objects, necessitating the use of advanced similarity measures. We utilize a rich model with hundreds of model parameters to describe the deformation relationships across such modalities. We also introduce a local edge-adaptive constraint to allow for varying degrees of smoothness between object boundaries and homogeneous regions. The parameters of the described method are estimated in a principled manner from training data via maximum likelihood learning, and the deformation is subsequently estimated using an efficient dynamic programming algorithm. Experimental results demonstrate the improved performance of the proposed approach over state-ofthe- art deformable registration techniques, on both unimodal and multimodal biomedical datasets.

  11. A client/server system for Internet access to biomedical text/image databanks.

    Science.gov (United States)

    Thoma, G R; Long, L R; Berman, L E

    1996-01-01

    Internet access to mixed text/image databanks is finding application in the medical world. An example is a database of medical X-rays and associated data consisting of demographic, socioeconomic, physician's exam, medical laboratory and other information collected as part of a nationwide health survey conducted by the government. Another example is a collection of digitized cryosection images, CT and MR taken of cadavers as part of the National Library of Medicine's Visible Human Project. In both cases, the challenge is to provide access to both the image and the associated text for a wide end user community to create atlases, conduct epidemiological studies, to develop image-specific algorithms for compression, enhancement and other types of image processing, among many other applications. The databanks mentioned above are being created in prototype form. This paper describes the prototype system developed for the archiving of the data and the client software to enable a broad range of end users to access the archive, retrieve text and image data, display the data and manipulate the images. System design considerations include; data organization in a relational database management system with object-oriented extensions; a hierarchical organization of the image data by different resolution levels for different user classes; client design based on common hardware and software platforms incorporating SQL search capability, X Window, Motif and TAE (a development environment supporting rapid prototyping and management of graphic-oriented user interfaces); potential to include ultra high resolution display monitors as a user option; intuitive user interface paradigm for building complex queries; and contrast enhancement, magnification and mensuration tools for better viewing by the user.

  12. An inventory of biomedical imaging physics elements-of-competence for diagnostic radiography education in Europe

    Energy Technology Data Exchange (ETDEWEB)

    Caruana, Carmel J. [University of Malta, Institute of Health Care, St Lukes Hospital, Gwardamangia (Malta)]. E-mail: carmel.j.caruana@um.edu.mt; Plasek, Jaromir [Charles University, Faculty of Mathematics and Physics, Institute of Physics, Division of Biophysics, Prague (Czech Republic)

    2006-08-15

    Purpose: To develop an inventory of biomedical physics elements-of-competence for diagnostic radiography education in Europe. Method: Research articles in the English literature and UK documentation pertinent to radiography education, competences and role development were subjected to a rigorous analysis of content from a functional and competence analysis perspective. Translations of radiography curricula from across Europe and relevant EU legislation were likewise analysed to ensure a pan-European perspective. Broad Subject Specific Competences for diagnostic radiography that included major biomedical physics components were singled out. These competences were in turn carefully deconstructed into specific elements-of-competence and those elements falling within the biomedical physics learning domain inventorised. A pilot version of the inventory was evaluated by participants during a meeting of the Higher Education Network for Radiography in Europe (HENRE), held in Marsascala, Malta, in November 2004. The inventory was further refined taking into consideration suggestions by HENRE members and scientific, professional and educational developments. Findings: The evaluation of the pilot inventory was very positive and indicated that the overall structure of the inventory was sensible, easily understood and acceptable - hence a good foundation for further development. Conclusions: Use of the inventory by radiography programme leaders and biomedical physics educators would guarantee that all necessary physics elements-of-competence underpinning the safe, effective and economical use of imaging devices are included within radiography curricula. It will also ensure the relevancy of physics content within radiography education. The inventory is designed to be a pragmatic tool for curriculum development across the entire range of radiography education up to doctorate level and irrespective of whether curriculum delivery is discipline-based or integrated, presentation

  13. An inventory of biomedical imaging physics elements-of-competence for diagnostic radiography education in Europe

    International Nuclear Information System (INIS)

    Caruana, Carmel J.; Plasek, Jaromir

    2006-01-01

    Purpose: To develop an inventory of biomedical physics elements-of-competence for diagnostic radiography education in Europe. Method: Research articles in the English literature and UK documentation pertinent to radiography education, competences and role development were subjected to a rigorous analysis of content from a functional and competence analysis perspective. Translations of radiography curricula from across Europe and relevant EU legislation were likewise analysed to ensure a pan-European perspective. Broad Subject Specific Competences for diagnostic radiography that included major biomedical physics components were singled out. These competences were in turn carefully deconstructed into specific elements-of-competence and those elements falling within the biomedical physics learning domain inventorised. A pilot version of the inventory was evaluated by participants during a meeting of the Higher Education Network for Radiography in Europe (HENRE), held in Marsascala, Malta, in November 2004. The inventory was further refined taking into consideration suggestions by HENRE members and scientific, professional and educational developments. Findings: The evaluation of the pilot inventory was very positive and indicated that the overall structure of the inventory was sensible, easily understood and acceptable - hence a good foundation for further development. Conclusions: Use of the inventory by radiography programme leaders and biomedical physics educators would guarantee that all necessary physics elements-of-competence underpinning the safe, effective and economical use of imaging devices are included within radiography curricula. It will also ensure the relevancy of physics content within radiography education. The inventory is designed to be a pragmatic tool for curriculum development across the entire range of radiography education up to doctorate level and irrespective of whether curriculum delivery is discipline-based or integrated, presentation

  14. Investigation of biomedical inner microstructures with hard X-ray phase-contrast imaging

    Energy Technology Data Exchange (ETDEWEB)

    Shu Hang [Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, CAS, 100049 Beijing (China); Graduate University of the Chinese Academy of Sciences, 100864 Beijing (China); Zhu Peiping [Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, CAS, 100049 Beijing (China); Chen Bo [Department of Physics, University of Science and Technology of China, Hefei 230026 (China); Liu Bo; Yin Hongxia [Capital University of Medical Sciences, 100054 Beijing (China); Li Enrong [Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, CAS, 100049 Beijing (China); Graduate University of the Chinese Academy of Sciences, 100864 Beijing (China); Liu Yijin [Department of Physics, University of Science and Technology of China, Hefei 230026 (China); Wang Junyue [Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, CAS, 100049 Beijing (China); Graduate University of the Chinese Academy of Sciences, 100864 Beijing (China); Yuan Qingxi; Huang Wanxia; Fang Shouxian [Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, CAS, 100049 Beijing (China); Wu Ziyu [Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, CAS, 100049 Beijing (China); National Center for NanoScience and Technology, 100080 Beijing (China)], E-mail: wuzy@ihep.ac.cn

    2007-09-21

    Hard X-ray Phase-Contrast Imaging (HX-PCI) is a new and valuable method that may provide information of the inner parts of an opaque object. Previous reports demonstrated its applicability in soft and hard tissue imaging. Here we provide further evidence for improved image quality and the effective capability to distinguish inner microstructures in real biomedical systems such as cochlea. Experiments performed both at the 4W1A beamline of the Beijing Synchrotron Radiation Facility (BSRF) and at the Taiwan National Synchrotron Radiation Research Center (NSRRC) clearly show details of samples' inner microstructure with a resolution of a few microns. The improved spatial resolution is a relevant achievement for future improved understanding and clinical trials.

  15. The effect of graphite sources on preparation of Photoluminescent graphene nano-sheets for biomedical imaging

    Directory of Open Access Journals (Sweden)

    Soroush Moasses Ghafary

    2017-07-01

    Full Text Available Objective(s: Graphene as two-dimensional (2D materials have attracted wide attention in different fields such as biomedical imaging. Ultra-small graphene nano-sheets (UGNSs have been designated as low dimensional graphene sheets with lateral dimensions less than few nanometres (≤ 500 nm in one, two or few layers. Several studies have proven that the process of acidic exfoliation and oxidation is one of the most effective methods to synthesize low dimensional graphene sheets. The band gap of graphene can be changed through changing the reaction temperature resulting in different photoluminescent colors. The aim of our study is synthesis of multi-color photoluminescent UGNSs for biomedical imaging.Materials and Methods: Two different UGNSs were synthesized from two different graphite sources via acidic treatment with a mixture of sulfuric and nitric acids. The prepared UGNSs were characterized by UV-Vis, photoluminescent, Raman spectroscopy and scanning electron microscopy (SEM. The photoluminescence colors of the prepared UGNSs were detected under excitation wavelength of 470 nm using optical filters.Results: The results showed that the graphite primary source is a determinant factor in the synthesis of different UGNSs. While altering reaction temperature didn't significantly change the emission wavelengths; however it affected their photoluminescent emission intensity.Conclusion: Overall, nontoxic UGNSs synthesized by simple acidic treatment of graphite with different photoluminescent colors (green, yellow and red can be a promising fluorescent probe for bioimaging.

  16. The list of growth image files - The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us The... Rice Growth Monitoring for The Phenotypic Functional Analysis The list of growth image f...iles Data detail Data name The list of growth image files DOI 10.18908/lsdba.nbdc00945-002 Description of data contents The...ies 7 entries - About This Database Database Description Download License Update History of This Database Si...te Policy | Contact Us The list of growth image files - The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive ...

  17. The rice growth image files - The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us The... Rice Growth Monitoring for The Phenotypic Functional Analysis The rice growth image file...s Data detail Data name The rice growth image files DOI 10.18908/lsdba.nbdc00945-004 Description of data contents The...ite Policy | Contact Us The rice growth image files - The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive ... ...ies 14 entries - About This Database Database Description Download License Update History of This Database S

  18. MARS Spectral Imaging: From High-Energy Physics to a Biomedical Business

    CERN Multimedia

    CERN. Geneva

    2017-01-01

    Abstract MARS spectral scanners provide colour X-Ray images. Current MARS pre-clinical scanners enable researchers and clinicians to measure biochemical and physiological processes in specimens, and animal models of disease. The scanners have developed from a 10 year scientific collaboration between New Zealand and CERN. In parallel a company, MARS Bioimaging Ltd, was founded to commercialise the technology by productising the scanner and selling it to biomedical users around the world. The New Zealand team is now more than 30 people including staff and students from the fields of physics, engineering, computing, maths, radiology, cardiology, biochemistry, oncology, and orthopaedics. Current work with pre-clinical scanners has concluded that the technology will be  useful in heart disease, stroke, arthritis, joint replacements, and cancer. In late 2014, the government announced funding for NZ to build a MARS scanner capable of imaging humans. Bio Professor Anthony Butler is a radiologist wit...

  19. [Recommendations for the selection of storage media for archiving digital radiological image data based on the comparison of retrieval times at different PACS archive levels].

    Science.gov (United States)

    Wirth, S; Treitl, M; Lucke, A; Mittermaier, I; Nissen-Meyer, S; Villain, S; Pfeifer, K-J; Reiser, M

    2005-02-01

    Recommendations for archiving digital radiological image data based on the comparison of retrieval times for different PACS archive levels. For a large PACS installation (Agfa Impax, Release 4.1), image retrieval times for radiological standard examinations (chest radiographs with 2, MRI with 250, CT with 100 and 1000 images; n = 120, each) from hard disk array, magneto-optical disk (MOD), and magnetic tape archives (TAPE) were examined in high and low network traffic load. Even large CT examinations (1000 images) were available from hard disk arrays within 4.0 +/- 0.8 s, smaller studies within 1.8 +/- 0.3 s. Radiographic image retrieval from MOD (30 +/- 4.7 s) was more then 50 % faster than from TAPE. For typical cross-sectional studies, the velocity gain amounted to 19 %. For both technologies, no significant difference was found for large CT examinations (651 +/- 144 s). For high and low network traffic load scenarios, image retrieval times from hard disk, MOD, and TAPE archives increased by 87 %, 7 %, and 22 %, respectively. Hard disk arrays are specifically suited as departmental intermediate storage media because they allow fast access to current and previous examinations within a short time. Performance properties enable both MOD and TAPE systems to serve as long-term archives. However, MOD archives are less flexible in the expansion of storage capacity and at present the medium costs per memory unit are about 2 - 3 times higher than for tape archives. The use of existing MOD-archives may be adequate as intermediate archives. For new PACS installations or system expansions, however, it is recommended to combine a sufficiently large local data memory (RAID) with data storage on tape archives outside the radiological unit that can be used by other departments as well. Future development of hard disk prices will show whether archiving for the whole data retention period may be handled by RAID systems. In any case, prefetching problems and waiting periods for

  20. Biomedical Applications of the Information-efficient Spectral Imaging Sensor (ISIS)

    Energy Technology Data Exchange (ETDEWEB)

    Gentry, S.M.; Levenson, R.

    1999-01-21

    The Information-efficient Spectral Imaging Sensor (ISIS) approach to spectral imaging seeks to bridge the gap between tuned multispectral and fixed hyperspectral imaging sensors. By allowing the definition of completely general spectral filter functions, truly optimal measurements can be made for a given task. These optimal measurements significantly improve signal-to-noise ratio (SNR) and speed, minimize data volume and data rate, while preserving classification accuracy. The following paper investigates the application of the ISIS sensing approach in two sample biomedical applications: prostate and colon cancer screening. It is shown that in these applications, two to three optimal measurements are sufficient to capture the majority of classification information for critical sample constituents. In the prostate cancer example, the optimal measurements allow 8% relative improvement in classification accuracy of critical cell constituents over a red, green, blue (RGB) sensor. In the colon cancer example, use of optimal measurements boost the classification accuracy of critical cell constituents by 28% relative to the RGB sensor. In both cases, optimal measurements match the performance achieved by the entire hyperspectral data set. The paper concludes that an ISIS style spectral imager can acquire these optimal spectral images directly, allowing improved classification accuracy over an RGB sensor. Compared to a hyperspectral sensor, the ISIS approach can achieve similar classification accuracy using a significantly lower number of spectral samples, thus minimizing overall sample classification time and cost.

  1. JAtlasView: a Java atlas-viewer for browsing biomedical 3D images and atlases.

    Science.gov (United States)

    Feng, Guangjie; Burton, Nick; Hill, Bill; Davidson, Duncan; Kerwin, Janet; Scott, Mark; Lindsay, Susan; Baldock, Richard

    2005-03-09

    Many three-dimensional (3D) images are routinely collected in biomedical research and a number of digital atlases with associated anatomical and other information have been published. A number of tools are available for viewing this data ranging from commercial visualization packages to freely available, typically system architecture dependent, solutions. Here we discuss an atlas viewer implemented to run on any workstation using the architecture neutral Java programming language. We report the development of a freely available Java based viewer for 3D image data, descibe the structure and functionality of the viewer and how automated tools can be developed to manage the Java Native Interface code. The viewer allows arbitrary re-sectioning of the data and interactive browsing through the volume. With appropriately formatted data, for example as provided for the Electronic Atlas of the Developing Human Brain, a 3D surface view and anatomical browsing is available. The interface is developed in Java with Java3D providing the 3D rendering. For efficiency the image data is manipulated using the Woolz image-processing library provided as a dynamically linked module for each machine architecture. We conclude that Java provides an appropriate environment for efficient development of these tools and techniques exist to allow computationally efficient image-processing libraries to be integrated relatively easily.

  2. Biomedical engineering and nanotechnology

    International Nuclear Information System (INIS)

    Pawar, S.H.; Khyalappa, R.J.; Yakhmi, J.V.

    2009-01-01

    This book is predominantly a compilation of papers presented in the conference which is focused on the development in biomedical materials, biomedical devises and instrumentation, biomedical effects of electromagnetic radiation, electrotherapy, radiotherapy, biosensors, biotechnology, bioengineering, tissue engineering, clinical engineering and surgical planning, medical imaging, hospital system management, biomedical education, biomedical industry and society, bioinformatics, structured nanomaterial for biomedical application, nano-composites, nano-medicine, synthesis of nanomaterial, nano science and technology development. The papers presented herein contain the scientific substance to suffice the academic directivity of the researchers from the field of biomedicine, biomedical engineering, material science and nanotechnology. Papers relevant to INIS are indexed separately

  3. NeuroTerrain--a client-server system for browsing 3D biomedical image data sets.

    Science.gov (United States)

    Gustafson, Carl; Bug, William J; Nissanov, Jonathan

    2007-02-05

    Three dimensional biomedical image sets are becoming ubiquitous, along with the canonical atlases providing the necessary spatial context for analysis. To make full use of these 3D image sets, one must be able to present views for 2D display, either surface renderings or 2D cross-sections through the data. Typical display software is limited to presentations along one of the three orthogonal anatomical axes (coronal, horizontal, or sagittal). However, data sets precisely oriented along the major axes are rare. To make fullest use of these datasets, one must reasonably match the atlas' orientation; this involves resampling the atlas in planes matched to the data set. Traditionally, this requires the atlas and browser reside on the user's desktop; unfortunately, in addition to being monolithic programs, these tools often require substantial local resources. In this article, we describe a network-capable, client-server framework to slice and visualize 3D atlases at off-axis angles, along with an open client architecture and development kit to support integration into complex data analysis environments. Here we describe the basic architecture of a client-server 3D visualization system, consisting of a thin Java client built on a development kit, and a computationally robust, high-performance server written in ANSI C++. The Java client components (NetOStat) support arbitrary-angle viewing and run on readily available desktop computers running Mac OS X, Windows XP, or Linux as a downloadable Java Application. Using the NeuroTerrain Software Development Kit (NT-SDK), sophisticated atlas browsing can be added to any Java-compatible application requiring as little as 50 lines of Java glue code, thus making it eminently re-useable and much more accessible to programmers building more complex, biomedical data analysis tools. The NT-SDK separates the interactive GUI components from the server control and monitoring, so as to support development of non-interactive applications

  4. Database Description - Open TG-GATEs Pathological Image Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Open TG-GATEs Pathological Image Database Database Description General information of database Database... name Open TG-GATEs Pathological Image Database Alternative name - DOI 10.18908/lsdba.nbdc00954-0...iomedical Innovation 7-6-8, Saito-asagi, Ibaraki-city, Osaka 567-0085, Japan TEL:81-72-641-9826 Email: Database... classification Toxicogenomics Database Organism Taxonomy Name: Rattus norvegi...cus Taxonomy ID: 10116 Database description On the pathological image database, over 53,000 high-resolution

  5. Bio-degradable highly fluorescent conjugated polymer nanoparticles for bio-medical imaging applications.

    Science.gov (United States)

    Repenko, Tatjana; Rix, Anne; Ludwanowski, Simon; Go, Dennis; Kiessling, Fabian; Lederle, Wiltrud; Kuehne, Alexander J C

    2017-09-07

    Conjugated polymer nanoparticles exhibit strong fluorescence and have been applied for biological fluorescence imaging in cell culture and in small animals. However, conjugated polymer particles are hydrophobic and often chemically inert materials with diameters ranging from below 50 nm to several microns. As such, conjugated polymer nanoparticles cannot be excreted through the renal system. This drawback has prevented their application for clinical bio-medical imaging. Here, we present fully conjugated polymer nanoparticles based on imidazole units. These nanoparticles can be bio-degraded by activated macrophages. Reactive oxygen species induce scission of the conjugated polymer backbone at the imidazole unit, leading to complete decomposition of the particles into soluble low molecular weight fragments. Furthermore, the nanoparticles can be surface functionalized for directed targeting. The approach opens a wide range of opportunities for conjugated polymer particles in the fields of medical imaging, drug-delivery, and theranostics.Conjugated polymer nanoparticles have been applied for biological fluorescence imaging in cell culture and in small animals, but cannot readily be excreted through the renal system. Here the authors show fully conjugated polymer nanoparticles based on imidazole units that can be bio-degraded by activated macrophages.

  6. Conception and data transfer analysis of an open-source digital image archive designed for radiology

    International Nuclear Information System (INIS)

    Teichgraeber, U.K.M.; Lehmkuhl, L.; Harderer, A.; Emmel, D.; Ehrenstein, T.; Ricke, J.; Felix, R.

    2003-01-01

    Purpose: Implementation of a self-designed, web-based digital image archive incorporating the existing DICOM infrastructure to assure distribution of digital pictures and reports and to optimize work flow. Assessment after three years. Materials and methods: Open-source software was used to guarantee highest reliability and cost effectiveness. In view of rapidly increasing capacity and decreasing costs of hard discs (HDs), HDs were preferred over slower and expensive magneto-optical disk (MOD) or tape storage systems. The number of installed servers increased from one to 12. By installing HDs with increased capacities, the number of servers should be kept constant. Entry and access of data were analyzed over two 4-month periods (after 1.5 and 2 years of continuous operations). Results: Our digital image archive was found to be very reliable, cost effective and suitable for its designated tasks. As judged from the measured access volume, the average utilization of the system increased by 160%. In the period from January to April 2002, the users accessed 239.8 gigabyte of the stored 873.7 gigabyte image data (27%). The volume of the stored data added 20%, mainly due to an increase in cross-section imaging. Conclusion: The challenge of developing a digital image archive with limited financial resources resulted in a practicable and expandable solution. The utilization, number of active users and volume of transferred data have increased significantly. Our concept of utilizing HDs for image storage proved to be successful. (orig.) [de

  7. PREFACE: 2nd International Conference and Young Scientist School ''Magnetic resonance imaging in biomedical research''

    Science.gov (United States)

    Naumova, A. V.; Khodanovich, M. Y.; Yarnykh, V. L.

    2016-02-01

    The Second International Conference and Young Scientist School ''Magnetic resonance imaging in biomedical research'' was held on the campus of the National Research Tomsk State University (Tomsk, Russia) on September 7-9, 2015. The conference was focused on magnetic resonance imaging (MRI) applications for biomedical research. The main goal was to bring together basic scientists, clinical researchers and developers of new MRI techniques to bridge the gap between clinical/research needs and advanced technological solutions. The conference fostered research and development in basic and clinical MR science and its application to health care. It also had an educational purpose to promote understanding of cutting-edge MR developments. The conference provided an opportunity for researchers and clinicians to present their recent theoretical developments, practical applications, and to discuss unsolved problems. The program of the conference was divided into three main topics. First day of the conference was devoted to educational lectures on the fundamentals of MRI physics and image acquisition/reconstruction techniques, including recent developments in quantitative MRI. The second day was focused on developments and applications of new contrast agents. Multinuclear and spectroscopic acquisitions as well as functional MRI were presented during the third day of the conference. We would like to highlight the main developments presented at the conference and introduce the prominent speakers. The keynote speaker of the conference Dr. Vasily Yarnykh (University of Washington, Seattle, USA) presented a recently developed MRI method, macromolecular proton fraction (MPF) mapping, as a unique tool for modifying image contrast and a unique tool for quantification of the myelin content in neural tissues. Professor Yury Pirogov (Lomonosov Moscow State University) described development of new fluorocarbon compounds and applications for biomedicine. Drs. Julia Velikina and Alexey

  8. Performance of a novel wafer scale CMOS active pixel sensor for bio-medical imaging

    International Nuclear Information System (INIS)

    Esposito, M; Evans, P M; Wells, K; Anaxagoras, T; Konstantinidis, A C; Zheng, Y; Speller, R D; Allinson, N M

    2014-01-01

    Recently CMOS active pixels sensors (APSs) have become a valuable alternative to amorphous silicon and selenium flat panel imagers (FPIs) in bio-medical imaging applications. CMOS APSs can now be scaled up to the standard 20 cm diameter wafer size by means of a reticle stitching block process. However, despite wafer scale CMOS APS being monolithic, sources of non-uniformity of response and regional variations can persist representing a significant challenge for wafer scale sensor response. Non-uniformity of stitched sensors can arise from a number of factors related to the manufacturing process, including variation of amplification, variation between readout components, wafer defects and process variations across the wafer due to manufacturing processes. This paper reports on an investigation into the spatial non-uniformity and regional variations of a wafer scale stitched CMOS APS. For the first time a per-pixel analysis of the electro-optical performance of a wafer CMOS APS is presented, to address inhomogeneity issues arising from the stitching techniques used to manufacture wafer scale sensors. A complete model of the signal generation in the pixel array has been provided and proved capable of accounting for noise and gain variations across the pixel array. This novel analysis leads to readout noise and conversion gain being evaluated at pixel level, stitching block level and in regions of interest, resulting in a coefficient of variation ⩽1.9%. The uniformity of the image quality performance has been further investigated in a typical x-ray application, i.e. mammography, showing a uniformity in terms of CNR among the highest when compared with mammography detectors commonly used in clinical practice. Finally, in order to compare the detection capability of this novel APS with the technology currently used (i.e. FPIs), theoretical evaluation of the detection quantum efficiency (DQE) at zero-frequency has been performed, resulting in a higher DQE for this

  9. Performance of a novel wafer scale CMOS active pixel sensor for bio-medical imaging.

    Science.gov (United States)

    Esposito, M; Anaxagoras, T; Konstantinidis, A C; Zheng, Y; Speller, R D; Evans, P M; Allinson, N M; Wells, K

    2014-07-07

    Recently CMOS active pixels sensors (APSs) have become a valuable alternative to amorphous silicon and selenium flat panel imagers (FPIs) in bio-medical imaging applications. CMOS APSs can now be scaled up to the standard 20 cm diameter wafer size by means of a reticle stitching block process. However, despite wafer scale CMOS APS being monolithic, sources of non-uniformity of response and regional variations can persist representing a significant challenge for wafer scale sensor response. Non-uniformity of stitched sensors can arise from a number of factors related to the manufacturing process, including variation of amplification, variation between readout components, wafer defects and process variations across the wafer due to manufacturing processes. This paper reports on an investigation into the spatial non-uniformity and regional variations of a wafer scale stitched CMOS APS. For the first time a per-pixel analysis of the electro-optical performance of a wafer CMOS APS is presented, to address inhomogeneity issues arising from the stitching techniques used to manufacture wafer scale sensors. A complete model of the signal generation in the pixel array has been provided and proved capable of accounting for noise and gain variations across the pixel array. This novel analysis leads to readout noise and conversion gain being evaluated at pixel level, stitching block level and in regions of interest, resulting in a coefficient of variation ⩽1.9%. The uniformity of the image quality performance has been further investigated in a typical x-ray application, i.e. mammography, showing a uniformity in terms of CNR among the highest when compared with mammography detectors commonly used in clinical practice. Finally, in order to compare the detection capability of this novel APS with the technology currently used (i.e. FPIs), theoretical evaluation of the detection quantum efficiency (DQE) at zero-frequency has been performed, resulting in a higher DQE for this

  10. Southern images - RGP gmap | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available 01-003 Description of data contents Parents Southern hybridization image files. Data file File name: rgp_gma...p File size: 37.3 MB Simple search URL - Data acquisition method Southern hybridization... Data analysis method For genotype segregation in F2 plants, Southern hybridization was performed with

  11. Spectral unmixing algorithm for distributed endmembers with applications to biomedical imaging

    Science.gov (United States)

    Rahman, Sabbir A.

    1999-04-01

    Spectral unmixing algorithms tend to make the simplifying assumptions that each type of material in a spectral library may be represented by a single reference spectrum and that the mixing process is linear. While these assumptions are convenient in that they allow techniques of linear algebra to be used, they lack realism as each material type in a spectral image will in general emit a distribution of spectra while the mixing itself need not be linear. We describe a 'common sense' spectral unmixing algorithm for the general case where endmembers are described by arbitrary D-dimensional probability distribution and the mixing can be non-linear. As an application we outline an unsupervised procedure for deriving the fractional material content of every pixel in an image and identifying anomalies given no a priori knowledge. Accurate endmember distribution are obtained by first masking out impure pixels using locally normalized Sobel and Laplacian filters and then performing single-link hierarchical clustering on the pure pixels which remain. The most probable endmember decomposition for a given target spectrum is found by selecting an appropriate set of endmembers based on the target's immediate neighborhood, and performing a constrained maximum likelihood search over the space of fractional abundances. We also explain how the procedure may be applied to subpixel and anomaly detection. To illustrate our ideas the techniques described are applied to biomedical images throughout.

  12. Digital data archive of zircon CL-images

    OpenAIRE

    Kunz, Barbara Eva

    2017-01-01

    For the PhD thesis 'Analysis of zircon from deep basement units: Correlation across orogenic cycles in the Southern and Western Alps' by Barbara E. Kunz a large number of zircon CL-images have been obtained. These images are the basis for all textural analysis of zircon as well as selecting suitable measurement spots for LA-ICP-MS analysis.

  13. GOES-12 Solar X-ray Imager Archive

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The GOES Solar X-ray Imager is integrated into the GOES-12 satellite, whose primary mission is to provide Earth-weather monitoring. The SXI is operated by NOAA's...

  14. Beamlines of the biomedical imaging and therapy facility at the Canadian light source - part 3

    Science.gov (United States)

    Wysokinski, Tomasz W.; Chapman, Dean; Adams, Gregg; Renier, Michel; Suortti, Pekka; Thomlinson, William

    2015-03-01

    The BioMedical Imaging and Therapy (BMIT) facility provides synchrotron-specific imaging and radiation therapy capabilities [1-4]. We describe here the Insertion Device (ID) beamline 05ID-2 with the beam terminated in the SOE-1 (Secondary Optical Enclosure) experimental hutch. This endstation is designed for imaging and therapy research primarily in animals ranging in size from mice to humans to horses, as well as tissue specimens including plants. Core research programs include human and animal reproduction, cancer imaging and therapy, spinal cord injury and repair, cardiovascular and lung imaging and disease, bone and cartilage growth and deterioration, mammography, developmental biology, gene expression research as well as the introduction of new imaging methods. The source for the ID beamline is a multi-pole superconducting 4.3 T wiggler [5]. The high field gives a critical energy over 20 keV. The high critical energy presents shielding challenges and great care must be taken to assess shielding requirements [6-9]. The optics in the POE-1 and POE-3 hutches [4,10] prepare a monochromatic beam that is 22 cm wide in the last experimental hutch SOE-1. The double crystal bent-Laue or Bragg monochromator, or the single-crystal K-edge subtraction (KES) monochromator provide an energy range appropriate for imaging studies in animals (20-100+ keV). SOE-1 (excluding the basement structure 4 m below the experimental floor) is 6 m wide, 5 m tall and 10 m long with a removable back wall to accommodate installation and removal of the Large Animal Positioning System (LAPS) capable of positioning and manipulating animals as large as a horse [11]. This end-station also includes a unique detector positioner with a vertical travel range of 4.9 m which is required for the KES imaging angle range of +12.3° to -7.3°. The detector positioner also includes moveable shielding integrated with the safety shutters. An update on the status of the other two end-stations at BMIT, described

  15. Beamlines of the biomedical imaging and therapy facility at the Canadian light source – part 3

    International Nuclear Information System (INIS)

    Wysokinski, Tomasz W.; Chapman, Dean; Adams, Gregg; Renier, Michel; Suortti, Pekka; Thomlinson, William

    2015-01-01

    The BioMedical Imaging and Therapy (BMIT) facility provides synchrotron-specific imaging and radiation therapy capabilities [1–4]. We describe here the Insertion Device (ID) beamline 05ID-2 with the beam terminated in the SOE-1 (Secondary Optical Enclosure) experimental hutch. This endstation is designed for imaging and therapy research primarily in animals ranging in size from mice to humans to horses, as well as tissue specimens including plants. Core research programs include human and animal reproduction, cancer imaging and therapy, spinal cord injury and repair, cardiovascular and lung imaging and disease, bone and cartilage growth and deterioration, mammography, developmental biology, gene expression research as well as the introduction of new imaging methods. The source for the ID beamline is a multi-pole superconducting 4.3 T wiggler [5]. The high field gives a critical energy over 20 keV. The high critical energy presents shielding challenges and great care must be taken to assess shielding requirements [6–9]. The optics in the POE-1 and POE-3 hutches [4,10] prepare a monochromatic beam that is 22 cm wide in the last experimental hutch SOE-1. The double crystal bent-Laue or Bragg monochromator, or the single-crystal K-edge subtraction (KES) monochromator provide an energy range appropriate for imaging studies in animals (20–100+ keV). SOE-1 (excluding the basement structure 4 m below the experimental floor) is 6 m wide, 5 m tall and 10 m long with a removable back wall to accommodate installation and removal of the Large Animal Positioning System (LAPS) capable of positioning and manipulating animals as large as a horse [11]. This end-station also includes a unique detector positioner with a vertical travel range of 4.9 m which is required for the KES imaging angle range of +12.3° to –7.3°. The detector positioner also includes moveable shielding integrated with the safety shutters. An update on the status of the other two end-stations at BMIT

  16. Beamlines of the biomedical imaging and therapy facility at the Canadian light source – part 3

    Energy Technology Data Exchange (ETDEWEB)

    Wysokinski, Tomasz W., E-mail: bmit@lightsource.ca [Canadian Light Source, Saskatoon, SK (Canada); Chapman, Dean [Anatomy and Cell Biology, University of Saskatchewan, Saskatoon, SK (Canada); Adams, Gregg [Western College of Veterinary Medicine, Saskatoon, SK (Canada); Renier, Michel [European Synchrotron Radiation Facility, Grenoble (France); Suortti, Pekka [Department of Physics, University of Helsinki (Finland); Thomlinson, William [Department of Physics, University of Saskatchewan, Saskatoon, SK (Canada)

    2015-03-01

    The BioMedical Imaging and Therapy (BMIT) facility provides synchrotron-specific imaging and radiation therapy capabilities [1–4]. We describe here the Insertion Device (ID) beamline 05ID-2 with the beam terminated in the SOE-1 (Secondary Optical Enclosure) experimental hutch. This endstation is designed for imaging and therapy research primarily in animals ranging in size from mice to humans to horses, as well as tissue specimens including plants. Core research programs include human and animal reproduction, cancer imaging and therapy, spinal cord injury and repair, cardiovascular and lung imaging and disease, bone and cartilage growth and deterioration, mammography, developmental biology, gene expression research as well as the introduction of new imaging methods. The source for the ID beamline is a multi-pole superconducting 4.3 T wiggler [5]. The high field gives a critical energy over 20 keV. The high critical energy presents shielding challenges and great care must be taken to assess shielding requirements [6–9]. The optics in the POE-1 and POE-3 hutches [4,10] prepare a monochromatic beam that is 22 cm wide in the last experimental hutch SOE-1. The double crystal bent-Laue or Bragg monochromator, or the single-crystal K-edge subtraction (KES) monochromator provide an energy range appropriate for imaging studies in animals (20–100+ keV). SOE-1 (excluding the basement structure 4 m below the experimental floor) is 6 m wide, 5 m tall and 10 m long with a removable back wall to accommodate installation and removal of the Large Animal Positioning System (LAPS) capable of positioning and manipulating animals as large as a horse [11]. This end-station also includes a unique detector positioner with a vertical travel range of 4.9 m which is required for the KES imaging angle range of +12.3° to –7.3°. The detector positioner also includes moveable shielding integrated with the safety shutters. An update on the status of the other two end-stations at BMIT

  17. Role of the multi-modality image archival and communication system in nuclear medicine

    International Nuclear Information System (INIS)

    Bela Kari; Adam Mester; Erno Mako; Zoltan Gyorfi; Bela Mihalik; Zsolt; Hegyi

    2004-01-01

    Various non-invasive imaging systems produce increasing amount of diagnostic images day by day in digital format. The direct consequence of this tendency places electronic archives and image transfers in spotlight. Moreover, the digital image archives may support any other activities like simultaneous displaying of multi-modality images, telediagnostics, on-line consultation, construction of standard databases for dedicated organs by regional and/or country wide (e.g. myocardial scintigraphy, mammography, etc....) in order to obtain much more exact diagnosis as well as to support education and training. Our institute started similar research and developing activities few years ago, resulting the construction of our PACS systems -MEDISA LINUX Debian and eRAD ImageMedical TM LINUX Red Hat- together with the telecommunication part. Mass storage unit of PACS is based on hard drives connecting in RAID with l.2Tbyte capacity. The on-line telecommunication system consists of an ISDN Multi-Media System (MMS) and Internet based independent units. MMS was dedicated mainly for on-line teleconferencing and consultation by the simultaneously transferred morphological and functional images obtaining from the central archives by DICOM or any other allowable image formats. MMS has been created as a part and requirements of an EU research project - RETRANSPLANT -. The central archives -PACS- can be accessed by DICOM 3.0 protocol on Internet surface through well maintained and secure access rights. Displaying and post-processing of any retrieved images on individual workstations are supported by eRAD ImageMedical TM PracticeBuilder1-2-3 (Window based) image manager with its unique supports and services. The 'real engine' of PracticeBuilder is Ver.5.0 or newer Internet Explorer. The unique feature of PracticelBuilder1-2-3 is the extremely fast patient and image access from the archives even from very 'far distance' (through continents), due to the exceptional image communication

  18. Biomedical nanotechnology.

    Science.gov (United States)

    Hurst, Sarah J

    2011-01-01

    This chapter summarizes the roles of nanomaterials in biomedical applications, focusing on those highlighted in this volume. A brief history of nanoscience and technology and a general introduction to the field are presented. Then, the chemical and physical properties of nanostructures that make them ideal for use in biomedical applications are highlighted. Examples of common applications, including sensing, imaging, and therapeutics, are given. Finally, the challenges associated with translating this field from the research laboratory to the clinic setting, in terms of the larger societal implications, are discussed.

  19. Preliminary application in teaching of medical imaging with picture archiving and communication systems

    International Nuclear Information System (INIS)

    Wei Yuqing; Hu Jian; Wang Xuejian; Cao Jun; Tong Juan; Shen Guiquan; Luo Min; Luo Song

    2003-01-01

    Objective: To evaluate PACS (picture archiving and communication systems) in the teaching of medical imaging. Methods: Large screen multimedia reading room and electronic study room were built with GE PACS and Angel RIS (radiology information system) and end-term picture-word work-station. Pictures and words of PACS were unloaded directly for teaching and teaching image bank and test image bank. Results: Large screen multimedia reading room, classroom, and electronic study room were built successfully. Valuable information of nearly 5000 patients in the teaching imaging bank of PACS was accumulated. Classic medical imaging teaching mode was changed. Real-time and multi-mode teaching were realized, and teaching effect was greatly improved. The PACS-based teaching model was accepted pleasantly by students. Conclusion: PACS is very useful to improve the teaching quality of medical imaging and it is worth to popularize

  20. Automated segmentation of synchrotron radiation micro-computed tomography biomedical images using Graph Cuts and neural networks

    Energy Technology Data Exchange (ETDEWEB)

    Alvarenga de Moura Meneses, Anderson, E-mail: ameneses@ieee.org [Radiological Sciences Laboratory, Rio de Janeiro State University, Rua Sao Francisco Xavier 524, CEP 20550-900, RJ (Brazil); Giusti, Alessandro [IDSIA (Dalle Molle Institute for Artificial Intelligence), University of Lugano (Switzerland); Pereira de Almeida, Andre; Parreira Nogueira, Liebert; Braz, Delson [Nuclear Engineering Program, Federal University of Rio de Janeiro, RJ (Brazil); Cely Barroso, Regina [Laboratory of Applied Physics on Biomedical Sciences, Physics Department, Rio de Janeiro State University, RJ (Brazil); Almeida, Carlos Eduardo de [Radiological Sciences Laboratory, Rio de Janeiro State University, Rua Sao Francisco Xavier 524, CEP 20550-900, RJ (Brazil)

    2011-12-21

    Synchrotron Radiation (SR) X-ray micro-Computed Tomography ({mu}CT) enables magnified images to be used as a non-invasive and non-destructive technique with a high space resolution for the qualitative and quantitative analyses of biomedical samples. The research on applications of segmentation algorithms to SR-{mu}CT is an open problem, due to the interesting and well-known characteristics of SR images for visualization, such as the high resolution and the phase contrast effect. In this article, we describe and assess the application of the Energy Minimization via Graph Cuts (EMvGC) algorithm for the segmentation of SR-{mu}CT biomedical images acquired at the Synchrotron Radiation for MEdical Physics (SYRMEP) beam line at the Elettra Laboratory (Trieste, Italy). We also propose a method using EMvGC with Artificial Neural Networks (EMANNs) for correcting misclassifications due to intensity variation of phase contrast, which are important effects and sometimes indispensable in certain biomedical applications, although they impair the segmentation provided by conventional techniques. Results demonstrate considerable success in the segmentation of SR-{mu}CT biomedical images, with average Dice Similarity Coefficient 99.88% for bony tissue in Wistar Rats rib samples (EMvGC), as well as 98.95% and 98.02% for scans of Rhodnius prolixus insect samples (Chagas's disease vector) with EMANNs, in relation to manual segmentation. The techniques EMvGC and EMANNs cope with the task of performing segmentation in images with the intensity variation due to phase contrast effects, presenting a superior performance in comparison to conventional segmentation techniques based on thresholding and linear/nonlinear image filtering, which is also discussed in the present article.

  1. Contributions on biomedical imaging, with a side-look at molecular imaging; Beitraege zur biomedizinischen Bildgebung mit einem Seitenblick auf Molecular Imaging

    Energy Technology Data Exchange (ETDEWEB)

    Winkler, G. (ed.)

    2004-05-01

    This report is intended as a brief introduction to the emerging scientific field of biomedical imaging. The breadth of the subject is shown and future fields of research are indicated, which hopefully will serve as a guide to the identification of starting points for the research in 'Biomedical and/or Molecular Imaging' at the GSF-National Research Center for Environment and Health. The report starts with a brief sketch of the history. Then a - necessarily incomplete - list of research topics is presented. It is organized in two parts: the first one addresses medical imaging, and the second one is concerned with biological point aspects of the matter. (orig.) [German] In diesem Bericht sind einige Beitraege zum Gebiet 'Bildgebende Verfahren in Biologie und Medizin' zusammengestellt. Sie stammen saemtlich aus dem Institut fuer Biomathematik und Biometrie, IBB, am Forschungszentrum fuer Umwelt und Gesundheit, GSF, in Muenchen/Neuherberg, und seinem engeren Umfeld. Ziel war es, zu sichten, was in und um diesen Themenkreis herum an Wissen und sonstiger Kompetenz hier vorhanden ist. Einige am IBB etablierte Gebiete wie Roentgen-Mammographie oder funktionelle Magnetresonanztherapie wurden ausgeblendet. Der Grund ist die Fokussierung auf ein nicht exakt definierbares, neues Gebiet der Bildgebung, das unter dem Namen 'Molecular Imaging' kursiert und derzeit Furore macht macht. (orig.)

  2. Combining magnetic resonance imaging and ultrawideband radar: a new concept for multimodal biomedical imaging.

    Science.gov (United States)

    Thiel, F; Hein, M; Schwarz, U; Sachs, J; Seifert, F

    2009-01-01

    Due to the recent advances in ultrawideband (UWB) radar technologies, there has been widespread interest in the medical applications of this technology. We propose the multimodal combination of magnetic resonance (MR) and UWB radar for improved functional diagnosis and imaging. A demonstrator was established to prove the feasibility of the simultaneous acquisition of physiological events by magnetic resonance imaging and UWB radar. Furthermore, first in vivo experiments have been carried out, utilizing this new approach. Correlating the reconstructed UWB signals with physiological signatures acquired by simultaneous MR measurements, representing respiratory and myocardial displacements, gave encouraging results which can be improved by optimization of the MR data acquisition technique or the use of UWB antenna arrays to localize the motion in a focused area.

  3. Dawn Mission E/PO Use of NASA Archived Images

    Science.gov (United States)

    Wise, J.

    2004-12-01

    The Dawn Mission is a mission in time to the very origins of the solar system. We will orbit both Vesta and Ceres for extended periods of time, collecting data that we hope will answer fundamental questions about the formation of planet earth and the solar system in general. Because of the length of this mission, our EPO plan has a unique opportunity to involve students, teachers, parents, and the general public in the anticipation and excitement of the cruise, arrival, and exploration of these asteroids. This presentation focuses on the Clickworkers activity of the Dawn EPO because of its extensive repurposing of NASA images as EPO resources. Clickworkers was designed by Bob Kanefsky at NASA AMES. Currently, it engages the public in counting and classifying craters using NASA images of Mars. The Dawn mission is developing and extending the curricular material within the existing Clickworkers activity as well as adding images of Eros and of course eventually, Vesta and Ceres. Our plan is to use the Clickworkers activity and accompanying curricular material to inform and educate the general public in preparation for the first images from Vesta and then Ceres. For example, what can be learned from counting and classifying craters. We are also informing people of the scientific process by using images from several of NASA's missions to demonstrate the accumulation of facts and information that is the process of science. We will present and discuss our difficulties: . First of which is preparing appropriate information about cratering for people. Scientists have developed an understanding of crater counting, classification, and analysis over years of study and research. How do we scaffold enough information to make the activity meaningful and a learning experience for our clients. . Another difficulty is communicating key concepts in terms that are accessible to space science neophytes. The scaffolding may be correct, but not in terms that the general public can relate

  4. Image fusion using MIM software via picture archiving and communication system

    International Nuclear Information System (INIS)

    Gu Zhaoxiang; Jiang Maosong

    2001-01-01

    The preliminary studies of the multimodality image registration and fusion were performed using an image fusion software and a picture archiving and communication system (PACS) to explore the methodology. Original image voluminal data were acquired with a CT scanner, MR and dual-head coincidence SPECT, respectively. The data sets from all imaging devices were queried, retrieved, transferred and accessed via DICOM PACS. The image fusion was performed at the SPECT ICON work-station, where the MIM (Medical Image Merge) fusion software was installed. The images were created by re-slicing original volume on the fly. The image volumes were aligned by translation and rotation of these view ports with respect to the original volume orientation. The transparency factor and contrast were adjusted in order that both volumes can be visualized in the merged images. The image volume data of CT, MR and nuclear medicine were transferred, accessed and loaded via PACS successfully. The perfect fused images of chest CT/ 18 F-FDG and brain MR/SPECT were obtained. These results showed that image fusion technique using PACS was feasible and practical. Further experimentation and larger validation studies were needed to explore the full potential of the clinical use

  5. Three-dimensional fuse deposition modeling of tissue-simulating phantom for biomedical optical imaging

    Science.gov (United States)

    Dong, Erbao; Zhao, Zuhua; Wang, Minjie; Xie, Yanjun; Li, Shidi; Shao, Pengfei; Cheng, Liuquan; Xu, Ronald X.

    2015-12-01

    Biomedical optical devices are widely used for clinical detection of various tissue anomalies. However, optical measurements have limited accuracy and traceability, partially owing to the lack of effective calibration methods that simulate the actual tissue conditions. To facilitate standardized calibration and performance evaluation of medical optical devices, we develop a three-dimensional fuse deposition modeling (FDM) technique for freeform fabrication of tissue-simulating phantoms. The FDM system uses transparent gel wax as the base material, titanium dioxide (TiO2) powder as the scattering ingredient, and graphite powder as the absorption ingredient. The ingredients are preheated, mixed, and deposited at the designated ratios layer-by-layer to simulate tissue structural and optical heterogeneities. By printing the sections of human brain model based on magnetic resonance images, we demonstrate the capability for simulating tissue structural heterogeneities. By measuring optical properties of multilayered phantoms and comparing with numerical simulation, we demonstrate the feasibility for simulating tissue optical properties. By creating a rat head phantom with embedded vasculature, we demonstrate the potential for mimicking physiologic processes of a living system.

  6. Evaluation of illumination system uniformity for wide-field biomedical hyperspectral imaging

    Science.gov (United States)

    Sawyer, Travis W.; Siri Luthman, A.; E Bohndiek, Sarah

    2017-04-01

    Hyperspectral imaging (HSI) systems collect both spatial (morphological) and spectral (chemical) information from a sample. HSI can provide sensitive analysis for biological and medical applications, for example, simultaneously measuring reflectance and fluorescence properties of a tissue, which together with structural information could improve early cancer detection and tumour characterisation. Illumination uniformity is a critical pre-condition for quantitative data extraction from an HSI system. Non-uniformity can cause glare, specular reflection and unwanted shading, which negatively impact statistical analysis procedures used to extract abundance of different chemical species. Here, we model and evaluate several illumination systems frequently used in wide-field biomedical imaging to test their potential for HSI. We use the software LightTools and FRED. The analysed systems include: a fibre ring light; a light emitting diode (LED) ring; and a diffuse scattering dome. Each system is characterised for spectral, spatial, and angular uniformity, as well as transfer efficiency. Furthermore, an approach to measure uniformity using the Kullback-Leibler divergence (KLD) is introduced. The KLD is generalisable to arbitrary illumination shapes, making it an attractive approach for characterising illumination distributions. Although the systems are quite comparable in their spatial and spectral uniformity, the most uniform angular distribution is achieved using a diffuse scattering dome, yielding a contrast of 0.503 and average deviation of 0.303 over a ±60° field of view with a 3.9% model error in the angular domain. Our results suggest that conventional illumination sources can be applied in HSI, but in the case of low light levels, bespoke illumination sources may offer improved performance.

  7. Modelling the Cost and Quality of Preservation Imaging and Archiving

    DEFF Research Database (Denmark)

    Kejser, Ulla Bøgvad

    2009-01-01

    in the OAIS Reference Model. The cost model divides the OAIS functions in a hierarchy of cost critical activities and measurable components, which are implemented as formulas in a spreadsheet. So far the model has only been completed for activities relating to preservation planning and digital migrations......, fire and other risks. In this PhD thesis it is examined how one may evaluate the long‐term costs and benefits to cultural heritage institutions of different preservation strategies for digital copies. The investigated alternatives are preserving the copies in a digital repository, and printing...... the files out on microfilm and preserving them in a non‐digital repository. In order to obtain empirical data and to understand the decisive cost factors in preservation copying, a case study was set up in which degrading sheet‐film negatives were digitised. Requirements for image quality and metadata were...

  8. Biomedical image representation approach using visualness and spatial information in a concept feature space for interactive region-of-interest-based retrieval.

    Science.gov (United States)

    Rahman, Md Mahmudur; Antani, Sameer K; Demner-Fushman, Dina; Thoma, George R

    2015-10-01

    This article presents an approach to biomedical image retrieval by mapping image regions to local concepts where images are represented in a weighted entropy-based concept feature space. The term "concept" refers to perceptually distinguishable visual patches that are identified locally in image regions and can be mapped to a glossary of imaging terms. Further, the visual significance (e.g., visualness) of concepts is measured as the Shannon entropy of pixel values in image patches and is used to refine the feature vector. Moreover, the system can assist the user in interactively selecting a region-of-interest (ROI) and searching for similar image ROIs. Further, a spatial verification step is used as a postprocessing step to improve retrieval results based on location information. The hypothesis that such approaches would improve biomedical image retrieval is validated through experiments on two different data sets, which are collected from open access biomedical literature.

  9. Preliminary results for X-ray phase contrast micro-tomography on the biomedical imaging beamline at SSRF

    International Nuclear Information System (INIS)

    Chen Rongchang; Du Guohao; Xie Honglan; Deng Biao; Tong Yajun; Hu Wen; Xue Yanling; Chen Can; Ren Yuqi; Zhou Guangzhao; Wang Yudan; Xiao Tiqiao; Xu Hongjie; Zhu Peiping

    2009-01-01

    With X-ray phase contrast micro-tomography(CT), one is able to obtain edge-enhanced image of internal structure of the samples. This allows visualization of the fine internal features for biology tissues, which is not able to resolve by conventional absorption CT. After preliminary modulation, monochromatic X-rays (8-72.5 keV) are available for experiments on the experimental station of the biomedical imaging beamline at Shanghai Synchrotron Radiation Facility(SSRF). In this paper, we report the in line phase contrast micro-tomography(IL-XPCT) of biology sample (locust) on the beamline. The reconstruct slice images and three dimensional rendering images of the locust were obtained, with clearly visible images of locus's wing, surface texture and internal tissue distribution. (authors)

  10. Reconstruction of former glacier surface topography from archive oblique aerial images

    Science.gov (United States)

    Midgley, N. G.; Tonkin, T. N.

    2017-04-01

    Archive oblique aerial imagery offers the potential to reconstruct the former geometry of valley glaciers and other landscape surfaces. Whilst the use of Structure-from-Motion (SfM) photogrammetry with multiview stereopsis (MVS) to process small-format imagery is now well established in the geosciences, the potential of the technique for extracting topographic data from archive oblique aerial imagery is unclear. Here, SfM-MVS is used to reconstruct the former topography of two high-Arctic glaciers (Midtre and Austre Lovénbreen, Svalbard, Norway) using three archive oblique aerial images obtained by the Norwegian Polar Institute in 1936. The 1936 point cloud was produced using seven LiDAR-derived ground control points located on stable surfaces in proximity to the former piedmont glacier termini. To assess accuracy, the 1936 data set was compared to a LiDAR data set using the M3C2 algorithm to calculate cloud-to-cloud differences. For stable areas (such as nonglacial surfaces), vertical differences were detected between the two point clouds (RMS M3C2 vertical difference of 8.5 m), with the outwash zones adjacent to the assessed glacier termini showing less extensive vertical discrepancies (94% of M3C2 vertical differences between ± 5 m). This

  11. Computer-aided biomedical imaging and graphics physiological measurement and control. Proceedings of the Biological Engineering Society, 6th Nordic meeting, Aberdeen, July 1984

    International Nuclear Information System (INIS)

    Jordan, M.; Perkins, W.J.; Upton, J.; Markham, J.

    1984-01-01

    The proceedings of the Sixth Nordic Meeting of the Biological Engineering Society held in Aberdeen in July 1984 on computer-aided biomedical imaging and graphics and physiological measurement and control are presented. The summaries of the papers presented cover the use of computer imaging and graphics in ultrasonic imaging, nuclear medicine, radiology, biomedical radiography, tomography and NMR imaging. The papers on the use of computers in physiological measurement and control cover subject headings including computer-based instrumentation, transducers, monitoring and control, assessment and therapy, clinical measurement, blood flow and signal processing and analysis. (U.K.)

  12. Development of a Multi-Centre Clinical Trial Data Archiving and Analysis Platform for Functional Imaging

    Science.gov (United States)

    Driscoll, Brandon; Jaffray, David; Coolens, Catherine

    2014-03-01

    Purpose: To provide clinicians & researchers participating in multi-centre clinical trials with a central repository for large volume dynamic imaging data as well as a set of tools for providing end-to-end testing and image analysis standards of practice. Methods: There are three main pieces to the data archiving and analysis system; the PACS server, the data analysis computer(s) and the high-speed networks that connect them. Each clinical trial is anonymized using a customizable anonymizer and is stored on a PACS only accessible by AE title access control. The remote analysis station consists of a single virtual machine per trial running on a powerful PC supporting multiple simultaneous instances. Imaging data management and analysis is performed within ClearCanvas Workstation® using custom designed plug-ins for kinetic modelling (The DCE-Tool®), quality assurance (The DCE-QA Tool) and RECIST. Results: A framework has been set up currently serving seven clinical trials spanning five hospitals with three more trials to be added over the next six months. After initial rapid image transfer (+ 2 MB/s), all data analysis is done server side making it robust and rapid. This has provided the ability to perform computationally expensive operations such as voxel-wise kinetic modelling on very large data archives (+20 GB/50k images/patient) remotely with minimal end-user hardware. Conclusions: This system is currently in its proof of concept stage but has been used successfully to send and analyze data from remote hospitals. Next steps will involve scaling up the system with a more powerful PACS and multiple high powered analysis machines as well as adding real-time review capabilities.

  13. Development of a Multi-Centre Clinical Trial Data Archiving and Analysis Platform for Functional Imaging

    International Nuclear Information System (INIS)

    Driscoll, Brandon; Jaffray, David; Coolens, Catherine

    2014-01-01

    Purpose: To provide clinicians and researchers participating in multi-centre clinical trials with a central repository for large volume dynamic imaging data as well as a set of tools for providing end-to-end testing and image analysis standards of practice. Methods: There are three main pieces to the data archiving and analysis system; the PACS server, the data analysis computer(s) and the high-speed networks that connect them. Each clinical trial is anonymized using a customizable anonymizer and is stored on a PACS only accessible by AE title access control. The remote analysis station consists of a single virtual machine per trial running on a powerful PC supporting multiple simultaneous instances. Imaging data management and analysis is performed within ClearCanvas Workstation® using custom designed plug-ins for kinetic modelling (The DCE-Tool®), quality assurance (The DCE-QA Tool) and RECIST. Results: A framework has been set up currently serving seven clinical trials spanning five hospitals with three more trials to be added over the next six months. After initial rapid image transfer (+ 2 MB/s), all data analysis is done server side making it robust and rapid. This has provided the ability to perform computationally expensive operations such as voxel-wise kinetic modelling on very large data archives (+20 GB/50k images/patient) remotely with minimal end-user hardware. Conclusions: This system is currently in its proof of concept stage but has been used successfully to send and analyze data from remote hospitals. Next steps will involve scaling up the system with a more powerful PACS and multiple high powered analysis machines as well as adding real-time review capabilities.

  14. Using Object Storage Technology vs Vendor Neutral Archives for an Image Data Repository Infrastructure.

    Science.gov (United States)

    Bialecki, Brian; Park, James; Tilkin, Mike

    2016-08-01

    The intent of this project was to use object storage and its database, which has the ability to add custom extensible metadata to an imaging object being stored within the system, to harness the power of its search capabilities, and to close the technology gap that healthcare faces. This creates a non-disruptive tool that can be used natively by both legacy systems and the healthcare systems of today which leverage more advanced storage technologies. The base infrastructure can be populated alongside current workflows without any interruption to the delivery of services. In certain use cases, this technology can be seen as a true alternative to the VNA (Vendor Neutral Archive) systems implemented by healthcare today. The scalability, security, and ability to process complex objects makes this more than just storage for image data and a commodity to be consumed by PACS (Picture Archiving and Communication System) and workstations. Object storage is a smart technology that can be leveraged to create vendor independence, standards compliance, and a data repository that can be mined for truly relevant content by adding additional context to search capabilities. This functionality can lead to efficiencies in workflow and a wealth of minable data to improve outcomes into the future.

  15. Joseph F. Keithley Award For Advances in Measurement Science Lecture: Thermophotonic and Photoacoustic Radar Imaging Methods for Biomedical and Dental Imaging

    Science.gov (United States)

    Mandelis, Andreas

    2012-02-01

    In the first part of this presentation I will introduce thermophotonic radar imaging principles and techniques using chirped or binary-phase-coded modulation, methods which can break through the maximum detection depth/depth resolution limitations of conventional photothermal waves. Using matched-filter principles, a methodology enabling parabolic diffusion-wave energy fields to exhibit energy localization akin to propagating hyperbolic wave-fields has been developed. It allows for deconvolution of individual responses of superposed axially discrete sources, opening a new field: depth-resolved thermal coherence tomography. Several examples from dental enamel caries diagnostic imaging to metal subsurface defect thermographic imaging will be discussed. The second part will introduce the field of photoacoustic radar (or sonar) biomedical imaging. I will report the development of a novel biomedical imaging system that utilizes a continuous-wave laser source with a custom intensity modulation pattern, ultrasonic phased array for signal detection and processing coupled with a beamforming algorithm for reconstruction of photoacoustic correlation images. Utilization of specific chirped modulation waveforms (``waveform engineering'') achieves dramatic signal-to-noise-ratio increase and improved axial resolution over pulsed laser photoacoustics. The talk will conclude with aspects of instrumental sensitivity of the PA Radar to optical contrast using cancerous breast tissue-mimicking phantoms, super paramagnetic iron oxide nanoparticles as contrast enhancement agents and in-vivo tissue samples.

  16. Development of ultrasound/endoscopy PACS (picture archiving and communication system) and investigation of compression method for cine images

    Science.gov (United States)

    Osada, Masakazu; Tsukui, Hideki

    2002-09-01

    ABSTRACT Picture Archiving and Communication System (PACS) is a system which connects imaging modalities, image archives, and image workstations to reduce film handling cost and improve hospital workflow. Handling diagnostic ultrasound and endoscopy images is challenging, because it produces large amount of data such as motion (cine) images of 30 frames per second, 640 x 480 in resolution, with 24-bit color. Also, it requires enough image quality for clinical review. We have developed PACS which is able to manage ultrasound and endoscopy cine images with above resolution and frame rate, and investigate suitable compression method and compression rate for clinical image review. Results show that clinicians require capability for frame-by-frame forward and backward review of cine images because they carefully look through motion images to find certain color patterns which may appear in one frame. In order to satisfy this quality, we have chosen motion JPEG, installed and confirmed that we could capture this specific pattern. As for acceptable image compression rate, we have performed subjective evaluation. No subjects could tell the difference between original non-compressed images and 1:10 lossy compressed JPEG images. One subject could tell the difference between original and 1:20 lossy compressed JPEG images although it is acceptable. Thus, ratios of 1:10 to 1:20 are acceptable to reduce data amount and cost while maintaining quality for clinical review.

  17. Detection rates in pediatric diagnostic imaging: a picture archive and communication system compared with a web-based imaging system

    International Nuclear Information System (INIS)

    McDonald, L.; Cramer, B.; Barrett, B.

    2006-01-01

    This prospective study assesses whether there are differences in accuracy of interpretation of diagnostic images among users of a picture archive and communication system (PACS) diagnostic workstation, compared with a less costly Web-based imaging system on a personal computer (PC) with a high resolution monitor. One hundred consecutive pediatric chest or abdomen and skeletal X-rays were selected from hospital inpatient and outpatient studies over a 5-month interval. They were classified as normal (n = 32), obviously abnormal (n = 33), or having subtle abnormal findings (n = 35) by 2 senior radiologists who reached a consensus for each individual case. Subsequently, 5 raters with varying degrees of experience independently viewed and interpreted the cases as normal or abnormal. Raters viewed each image 1 month apart on a PACS and on the Web-based PC imaging system. There was no relation between accuracy of detection and the system used to evaluate X-ray images (P = 0.92). The total percentage of incorrect interpretations on the Web-based PC imaging system was 23.2%, compared with 23.6% on the PACS (P = 0.92). For all raters combined, the overall difference in proportion assessed incorrectly on the PACS, compared with the PC system, was not significant at 0.4% (95%CI, -3.5% to 4.3%). The high-resolution Web-based imaging system via PC is an adequate alternative to a PACS clinical workstation. Accordingly, the provision of a more extensive network of workstations throughout the hospital setting could have potentially significant cost savings. (author)

  18. Lunar archive panoramas: modern image processing and access to the historic data based on spatial context

    Science.gov (United States)

    Kozlova, Natalia; Kokhanov, Alexander; Oberst, Jürgen; Zubarev, Anatoliy; Nadezhdina, Irina; Patraty, Vyacheslav; Karachevtseva, Irina; Garov, Andrey; Matveev, Evgeniy

    The objectives of our work are to fully exploit the historic Soviet Lunokhod data and use the results for scientific and public purposes. Unfortunately, many of the relevant operational parameters of the Lunokhods missions are lost. Modern photogrammetry is a key to solving these issues, providing analysis techniques, not available at the time of the early lunar missions. For this purpose we use special developed software, GIS tools and high-resolution LRO data [1]. Results of new image processing of historic data are part of PRoViDE project (Planetary Robotics Vision Data Exploitation) which aims to assemble a major portion of the imaging data gathered from different vehicles and probes on planetary surfaces into a unique database, bringing them into a spatial context and providing access to a complete set of 3D vision products (http://www.provide-space.eu/). Our technology of archive panorama processing allows us to recover lost information of Soviet lunar missions and study lunar landing site imagery by state-of-the-art photogrammetric techniques. Our main task is to perform lunar panoramas in measurement form based on photogrammetry and geoanalyses methods, and then involve them in more detailed morphometric analyses [2] and 3D-modeling of lunar surface based on LROC NAC image processing [3]. The results of our work are various types of new products: panoramas in different projections, updated metadata with recovering parameters, and ortho-panoramas, which can be used for quantitative geomorphology assessment based on spatial tools [4]. All data products obtained as a result of the study are to be placed into Planetary data storage which is developing as Geodesy and Cartography Node [5]. Access to archive lunar data will be organized via Geo-portal (http://cartsrv.mexlab.ru/geoportal/) using authorization service, which provided data security and user control. Planetary spatial information system can integrate various types of data for planets and their

  19. Modern Trends in Imaging XI: Impedance Measurements in the Biomedical Sciences

    Directory of Open Access Journals (Sweden)

    Frederick D. Coffman

    2012-01-01

    Full Text Available Biological organisms and their component organs, tissues and cells have unique electrical impedance properties. Impedance properties often change with changes in structure, composition, and metabolism, and can be indicative of the onset and progression of disease states. Over the past 100 years, instruments and analytical methods have been developed to measure the impedance properties of biological specimens and to utilize these measurements in both clinical and basic science settings. This chapter will review the applications of impedance measurements in the biomedical sciences, from whole body analysis to impedance measurements of single cells and cell monolayers, and how cellular impedance measuring instruments can now be used in high throughput screening applications.

  20. Digitized archive of the Kodaikanal images: Representative results of solar cycle variation from sunspot area determination

    Science.gov (United States)

    Ravindra, B.; Priya, T. G.; Amareswari, K.; Priyal, M.; Nazia, A. A.; Banerjee, D.

    2013-02-01

    maximum. Conclusions: The Kodaikanal data archive is hosted at http://kso.iiap.res.in. The long time sequence of the Kodaikanal white-light images provides a consistent data set for sunspot areas and other proxies. Many studies can be performed using Kodaikanal data alone without requiring intercalibration between different data sources.

  1. NeuroTerrain – a client-server system for browsing 3D biomedical image data sets

    Science.gov (United States)

    Gustafson, Carl; Bug, William J; Nissanov, Jonathan

    2007-01-01

    Background Three dimensional biomedical image sets are becoming ubiquitous, along with the canonical atlases providing the necessary spatial context for analysis. To make full use of these 3D image sets, one must be able to present views for 2D display, either surface renderings or 2D cross-sections through the data. Typical display software is limited to presentations along one of the three orthogonal anatomical axes (coronal, horizontal, or sagittal). However, data sets precisely oriented along the major axes are rare. To make fullest use of these datasets, one must reasonably match the atlas' orientation; this involves resampling the atlas in planes matched to the data set. Traditionally, this requires the atlas and browser reside on the user's desktop; unfortunately, in addition to being monolithic programs, these tools often require substantial local resources. In this article, we describe a network-capable, client-server framework to slice and visualize 3D atlases at off-axis angles, along with an open client architecture and development kit to support integration into complex data analysis environments. Results Here we describe the basic architecture of a client-server 3D visualization system, consisting of a thin Java client built on a development kit, and a computationally robust, high-performance server written in ANSI C++. The Java client components (NetOStat) support arbitrary-angle viewing and run on readily available desktop computers running Mac OS X, Windows XP, or Linux as a downloadable Java Application. Using the NeuroTerrain Software Development Kit (NT-SDK), sophisticated atlas browsing can be added to any Java-compatible application requiring as little as 50 lines of Java glue code, thus making it eminently re-useable and much more accessible to programmers building more complex, biomedical data analysis tools. The NT-SDK separates the interactive GUI components from the server control and monitoring, so as to support development of non

  2. NeuroTerrain – a client-server system for browsing 3D biomedical image data sets

    Directory of Open Access Journals (Sweden)

    Nissanov Jonathan

    2007-02-01

    Full Text Available Abstract Background Three dimensional biomedical image sets are becoming ubiquitous, along with the canonical atlases providing the necessary spatial context for analysis. To make full use of these 3D image sets, one must be able to present views for 2D display, either surface renderings or 2D cross-sections through the data. Typical display software is limited to presentations along one of the three orthogonal anatomical axes (coronal, horizontal, or sagittal. However, data sets precisely oriented along the major axes are rare. To make fullest use of these datasets, one must reasonably match the atlas' orientation; this involves resampling the atlas in planes matched to the data set. Traditionally, this requires the atlas and browser reside on the user's desktop; unfortunately, in addition to being monolithic programs, these tools often require substantial local resources. In this article, we describe a network-capable, client-server framework to slice and visualize 3D atlases at off-axis angles, along with an open client architecture and development kit to support integration into complex data analysis environments. Results Here we describe the basic architecture of a client-server 3D visualization system, consisting of a thin Java client built on a development kit, and a computationally robust, high-performance server written in ANSI C++. The Java client components (NetOStat support arbitrary-angle viewing and run on readily available desktop computers running Mac OS X, Windows XP, or Linux as a downloadable Java Application. Using the NeuroTerrain Software Development Kit (NT-SDK, sophisticated atlas browsing can be added to any Java-compatible application requiring as little as 50 lines of Java glue code, thus making it eminently re-useable and much more accessible to programmers building more complex, biomedical data analysis tools. The NT-SDK separates the interactive GUI components from the server control and monitoring, so as to support

  3. Journal of Medical and Biomedical Sciences

    African Journals Online (AJOL)

    Journal of Medical and Biomedical Sciences. Journal Home · ABOUT · Advanced Search · Current Issue · Archives · Journal Home > Vol 3, No 3 (2014) >. Log in or Register to get access to full text downloads.

  4. International Journal of Medicine and Biomedical Research

    African Journals Online (AJOL)

    International Journal of Medicine and Biomedical Research. Journal Home · ABOUT THIS JOURNAL · Advanced Search · Current Issue · Archives · Journal Home > Vol 5, No 3 (2016) >. Log in or Register to get access to full text downloads.

  5. Journal of Medical and Biomedical Sciences

    African Journals Online (AJOL)

    Journal of Medical and Biomedical Sciences. Journal Home · ABOUT THIS JOURNAL · Advanced Search · Current Issue · Archives · Journal Home > Vol 1, No 3 (2012) >. Log in or Register to get access to full text downloads.

  6. Biomedical imaging modality classification using combined visual features and textual terms.

    Science.gov (United States)

    Han, Xian-Hua; Chen, Yen-Wei

    2011-01-01

    We describe an approach for the automatic modality classification in medical image retrieval task of the 2010 CLEF cross-language image retrieval campaign (ImageCLEF). This paper is focused on the process of feature extraction from medical images and fuses the different extracted visual features and textual feature for modality classification. To extract visual features from the images, we used histogram descriptor of edge, gray, or color intensity and block-based variation as global features and SIFT histogram as local feature. For textual feature of image representation, the binary histogram of some predefined vocabulary words from image captions is used. Then, we combine the different features using normalized kernel functions for SVM classification. Furthermore, for some easy misclassified modality pairs such as CT and MR or PET and NM modalities, a local classifier is used for distinguishing samples in the pair modality to improve performance. The proposed strategy is evaluated with the provided modality dataset by ImageCLEF 2010.

  7. Multidimensional Processing and Visual Rendering of Complex 3D Biomedical Images – Year 3

    Data.gov (United States)

    National Aeronautics and Space Administration — To develop and utilize advanced image analysis techniques to maximize the resolution and utility of medical imaging methods being used during spaceflight. We have...

  8. Three novel lossless image compression schemes for medical image archiving and telemedicine.

    Science.gov (United States)

    Wang, J; Naghdy, G

    2000-01-01

    In this article, three novel lossless image compression schemes, hybrid predictive/vector quantization lossless image coding (HPVQ), shape-adaptive differential pulse code modulation (DPCM) (SADPCM), and shape-VQ-based hybrid ADPCM/DCT (ADPCMDCT) are introduced. All are based on the lossy coder, VQ. However, VQ is used in these new schemes as a tool to improve the decorrelation efficiency of those traditional lossless predictive coders such as DPCM, adaptive DPCM (ADPCM), and multiplicative autoregressive coding (MAR). A new kind of VQ, shape-VQ, is also introduced in this article. It provides predictive coders useful information regarding the shape characters of image block. These enhance the performance of predictive coders in the context of lossless coding. Simulation results of the proposed coders applied in lossless medical image compression are presented. Some leading lossless techniques such as DPCM, hierarchical interfold (HINT), CALIC, and the standard lossless JPEG are included in the tests. Promising results show that all these three methods are good candidates for lossless medical image compression.

  9. Advances in Biomedical Imaging, Bioengineering, and Related Technologies for the Development of Biomarkers of Pancreatic Disease: Summary of a National Institute of Diabetes and Digestive and Kidney Diseases and National Institute of Biomedical Imaging and Bioengineering Workshop.

    Science.gov (United States)

    Kelly, Kimberly A; Hollingsworth, Michael A; Brand, Randall E; Liu, Christina H; Singh, Vikesh K; Srivastava, Sudhir; Wasan, Ajay D; Yadav, Dhiraj; Andersen, Dana K

    2015-11-01

    A workshop sponsored by the National Institute of Diabetes and Digestive and Kidney Diseases and the National Institute of Biomedical Imaging and Bioengineering focused on research gaps and opportunities in the development of new biomarkers of pancreatic disease. The session was held on July 22, 2015, and structured into 6 sessions: 1) Introduction and Overview; 2) Keynote Address; 3) New Approaches to the Diagnosis of Chronic Pancreatitis; 4) Biomarkers of Pain and Inflammation; 5) New Approaches to the Detection of Pancreatic Cancer; and 6) Shed Exosomes, Shed Cells, and Shed Proteins. Recent advances in the fields of pancreatic imaging, functional markers of pancreatic disease, proteomics, molecular and cellular imaging, and detection of circulating cancer cells and exosomes were reviewed. Knowledge gaps and research needs were highlighted. The development of new methods for the noninvasive determination of pancreatic pathology; the use of cellular markers of pancreatic function, inflammation, pain, and malignancy; and the refinement of methods to identify cells and cellular constituents of pancreatic cancer were discussed. The further refinement of sophisticated technical methods and the need for clinical studies to validate these new approaches in large-scale studies of patients at risk for the development of pancreatic disease were repeatedly emphasized.

  10. Combined X-ray CT and mass spectrometry for biomedical imaging applications

    NARCIS (Netherlands)

    Schioppa Jr, E.; Ellis, S.; Bruinen, A.L.; Visser, J.; Heeren, R.M.A.; Uher, J.; Koffeman, E.

    2014-01-01

    Imaging technologies play a key role in many branches of science, especially in biology and medicine. They provide an invaluable insight into both internal structure and processes within a broad range of samples. There are many techniques that allow one to obtain images of an object. Different

  11. Biomedical Imaging Modality Classification Using Combined Visual Features and Textual Terms

    Directory of Open Access Journals (Sweden)

    Xian-Hua Han

    2011-01-01

    extraction from medical images and fuses the different extracted visual features and textual feature for modality classification. To extract visual features from the images, we used histogram descriptor of edge, gray, or color intensity and block-based variation as global features and SIFT histogram as local feature. For textual feature of image representation, the binary histogram of some predefined vocabulary words from image captions is used. Then, we combine the different features using normalized kernel functions for SVM classification. Furthermore, for some easy misclassified modality pairs such as CT and MR or PET and NM modalities, a local classifier is used for distinguishing samples in the pair modality to improve performance. The proposed strategy is evaluated with the provided modality dataset by ImageCLEF 2010.

  12. A General System for Automatic Biomedical Image Segmentation Using Intensity Neighborhoods

    Directory of Open Access Journals (Sweden)

    Cheng Chen

    2011-01-01

    Full Text Available Image segmentation is important with applications to several problems in biology and medicine. While extensively researched, generally, current segmentation methods perform adequately in the applications for which they were designed, but often require extensive modifications or calibrations before being used in a different application. We describe an approach that, with few modifications, can be used in a variety of image segmentation problems. The approach is based on a supervised learning strategy that utilizes intensity neighborhoods to assign each pixel in a test image its correct class based on training data. We describe methods for modeling rotations and variations in scales as well as a subset selection for training the classifiers. We show that the performance of our approach in tissue segmentation tasks in magnetic resonance and histopathology microscopy images, as well as nuclei segmentation from fluorescence microscopy images, is similar to or better than several algorithms specifically designed for each of these applications.

  13. A versatile x-ray microtomography station for biomedical imaging and materials research.

    Science.gov (United States)

    Lussani, Fernando Cesar; Vescovi, Rafael Ferreira da Costa; de Souza, Thaís Diniz; Leite, Carlos A P; Giles, Carlos

    2015-06-01

    An x-ray microtomography station implemented at the X-ray Applied Crystallography Laboratory of the State University of Campinas is described. The station is based on a propagation based phase contrast imaging setup with a microfocus source and digital x-ray area detectors. Due to its simplicity, this setup is ideal for fast, high resolution imaging and microtomography of small biological specimens and materials research samples. It can also be coupled to gratings to use and develop new techniques as the harmonic spatial coherent imaging, which allow scattering contrast imaging. Details of the experimental setup, equipment, and software integration are described. Test microtomography for setup commissioning and characterization is shown. We conclude that phase contrast enhanced x-ray imaging and microtomography with resolution below 5 μm voxel size are possible and data sets as wide as 2000 × 2000 × 2000 voxels are obtained with this instrumentation.

  14. Parallel Processing and Bio-inspired Computing for Biomedical Image Registration

    Directory of Open Access Journals (Sweden)

    Silviu Ioan Bejinariu

    2014-07-01

    Full Text Available Image Registration (IR is an optimization problem computing optimal parameters of a geometric transform used to overlay one or more source images to a given model by maximizing a similarity measure. In this paper the use of bio-inspired optimization algorithms in image registration is analyzed. Results obtained by means of three different algorithms are compared: Bacterial Foraging Optimization Algorithm (BFOA, Genetic Algorithm (GA and Clonal Selection Algorithm (CSA. Depending on the images type, the registration may be: area based, which is slow but more precise, and features based, which is faster. In this paper a feature based approach based on the Scale Invariant Feature Transform (SIFT is proposed. Finally, results obtained using sequential and parallel implementations on multi-core systems for area based and features based image registration are compared.

  15. Central image archiving and managements system for multicenter clinical studies: Lessons from low-dose CT for appendicitis trial

    Energy Technology Data Exchange (ETDEWEB)

    Ko, You Sun; Lee, Kyong Joon; Lee, Kyoung Ho [Dept. of Radiology, Seoul National University Bundang Hospital, Seongnam (Korea, Republic of); and others

    2017-03-15

    This special report aimed to document our experiences in implementing the Central Imaging Archiving and Management System (CIAMS) for a multicenter clinical trial, Low-dose CT for Appendicitis Trial (LOCAT), supported by the Korean Society of Radiology and Radiology Imaging Network of Korea for Clinical Research. LOCAT was a randomized controlled trial to determine whether low-dose CT is non-inferior to standard-dose CT with respect to the negative appendectomy rate in patients aged from 15 to 44 years. Site investigators downloaded the CT images from the site picture archiving and communication system servers, and uploaded the anonymized images to the primary server. CIAMS administrators inspected the images routed to the secondary server by a cross-check against image submission worksheets provided by the site investigators. The secondary server was automatically synchronized to the tertiary backup server. Up to June 2016, 2715 patients from 20 sites participated in LOCAT for 30 months. A total of 2539 patients' images (93.5%, 2539/2715) were uploaded to the primary server, 2193 patients' worksheets (80.8%, 2193/2715) were submitted, and 2163 patients' data (79.7%, 2163/2715) were finally monitored. No data error occurred.

  16. WE-B-210-02: The Advent of Ultrafast Imaging in Biomedical Ultrasound

    International Nuclear Information System (INIS)

    Tanter, M.

    2015-01-01

    In the last fifteen years, the introduction of plane or diverging wave transmissions rather than line by line scanning focused beams has broken the conventional barriers of ultrasound imaging. By using such large field of view transmissions, the frame rate reaches the theoretical limit of physics dictated by the ultrasound speed and an ultrasonic map can be provided typically in tens of micro-seconds (several thousands of frames per second). Interestingly, this leap in frame rate is not only a technological breakthrough but it permits the advent of completely new ultrasound imaging modes, including shear wave elastography, electromechanical wave imaging, ultrafast doppler, ultrafast contrast imaging, and even functional ultrasound imaging of brain activity (fUltrasound) introducing Ultrasound as an emerging full-fledged neuroimaging modality. At ultrafast frame rates, it becomes possible to track in real time the transient vibrations – known as shear waves – propagating through organs. Such “human body seismology” provides quantitative maps of local tissue stiffness whose added value for diagnosis has been recently demonstrated in many fields of radiology (breast, prostate and liver cancer, cardiovascular imaging, …). Today, Supersonic Imagine company is commercializing the first clinical ultrafast ultrasound scanner, Aixplorer with real time Shear Wave Elastography. This is the first example of an ultrafast Ultrasound approach surpassing the research phase and now widely spread in the clinical medical ultrasound community with an installed base of more than 1000 Aixplorer systems in 54 countries worldwide. For blood flow imaging, ultrafast Doppler permits high-precision characterization of complex vascular and cardiac flows. It also gives ultrasound the ability to detect very subtle blood flow in very small vessels. In the brain, such ultrasensitive Doppler paves the way for fUltrasound (functional ultrasound imaging) of brain activity with unprecedented

  17. WE-B-210-02: The Advent of Ultrafast Imaging in Biomedical Ultrasound

    Energy Technology Data Exchange (ETDEWEB)

    Tanter, M. [Laboratoire Ondes et Acoustique (France)

    2015-06-15

    In the last fifteen years, the introduction of plane or diverging wave transmissions rather than line by line scanning focused beams has broken the conventional barriers of ultrasound imaging. By using such large field of view transmissions, the frame rate reaches the theoretical limit of physics dictated by the ultrasound speed and an ultrasonic map can be provided typically in tens of micro-seconds (several thousands of frames per second). Interestingly, this leap in frame rate is not only a technological breakthrough but it permits the advent of completely new ultrasound imaging modes, including shear wave elastography, electromechanical wave imaging, ultrafast doppler, ultrafast contrast imaging, and even functional ultrasound imaging of brain activity (fUltrasound) introducing Ultrasound as an emerging full-fledged neuroimaging modality. At ultrafast frame rates, it becomes possible to track in real time the transient vibrations – known as shear waves – propagating through organs. Such “human body seismology” provides quantitative maps of local tissue stiffness whose added value for diagnosis has been recently demonstrated in many fields of radiology (breast, prostate and liver cancer, cardiovascular imaging, …). Today, Supersonic Imagine company is commercializing the first clinical ultrafast ultrasound scanner, Aixplorer with real time Shear Wave Elastography. This is the first example of an ultrafast Ultrasound approach surpassing the research phase and now widely spread in the clinical medical ultrasound community with an installed base of more than 1000 Aixplorer systems in 54 countries worldwide. For blood flow imaging, ultrafast Doppler permits high-precision characterization of complex vascular and cardiac flows. It also gives ultrasound the ability to detect very subtle blood flow in very small vessels. In the brain, such ultrasensitive Doppler paves the way for fUltrasound (functional ultrasound imaging) of brain activity with unprecedented

  18. 78 FR 11660 - National Institute of Biomedical Imaging And Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2013-02-19

    ... meeting will be closed to the public in accordance with the provisions set forth in sections 552b(c)(4... Imaging and Bioengineering Special Emphasis Panel; NIH-NIBIB LRP Review Meeting (2013-08) Date: April 5...

  19. 77 FR 17080 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

    Science.gov (United States)

    2012-03-23

    ... meeting will be closed to the public in accordance with the provisions set forth in sections 552b(c)(4... Imaging and Bioengineering Special Emphasis Panel; NIBIB LRP Review (2012/08). Date: April 23, 2012. Time...

  20. Description of an acquisition, management and archiving system for digital images

    International Nuclear Information System (INIS)

    Andre, M.; Agostini, S.; Clement, J.P.; Giaccone, A.; Lefevre, C.

    1990-01-01

    A digitalizing and archiving system, for radiologic pictures is presented. This system is composed by a camera, a microcomputer (Maclntosh II) with a digitalizing card and a great capacity optical disk (WORM) for storage. Acquiring and archiving are automatically driven by a special soft. The principal qualities of this system are simplicity for the user, speed and low cost [fr

  1. An integrated and highly sensitive ultrafast acoustoelectric imaging system for biomedical applications.

    Science.gov (United States)

    Berthon, Beatrice; Dansette, Pierre-Marc; Tanter, Mickaël; Pernot, Mathieu; Provost, Jean

    2017-06-26

    Direct imaging of the electrical activation of the heart is crucial to better understand and diagnose diseases linked to arrhythmias. This work presents an ultrafast acoustoelectric imaging (UAI) system for direct and non-invasive ultrafast mapping of propagating current densities using the acoustoelectric effect. Acoustoelectric imaging is based on the acoustoelectric effect, the modulation of the medium's electrical impedance by a propagating ultrasonic wave. UAI triggers this effect with plane wave emissions to image current densities. An ultrasound research platform was fitted with electrodes connected to high common-mode rejection ratio amplifiers and sampled by up to 128 independent channels. The sequences developed allow for both real-time display of acoustoelectric maps and long ultrafast acquisition with fast off-line processing. The system was evaluated by injecting controlled currents into a saline pool via copper wire electrodes. Sensitivity to low current and low acoustic pressure were measured independently. Contrast and spatial resolution were measured for varying numbers of plane waves and compared to line per line acoustoelectric imaging with focused beams at equivalent peak pressure. Temporal resolution was assessed by measuring time-varying current densities associated with sinusoidal currents. Complex intensity distributions were also imaged in 3D. Electrical current densities were detected for injected currents as low as 0.56 mA. UAI outperformed conventional focused acoustoelectric imaging in terms of contrast and spatial resolution when using 3 and 13 plane waves or more, respectively. Neighboring sinusoidal currents with opposed phases were accurately imaged and separated. Time-varying currents were mapped and their frequency accurately measured for imaging frame rates up to 500 Hz. Finally, a 3D image of a complex intensity distribution was obtained. The results demonstrated the high sensitivity of the UAI system proposed. The plane wave

  2. An integrated and highly sensitive ultrafast acoustoelectric imaging system for biomedical applications

    Science.gov (United States)

    Berthon, Beatrice; Dansette, Pierre-Marc; Tanter, Mickaël; Pernot, Mathieu; Provost, Jean

    2017-07-01

    Direct imaging of the electrical activation of the heart is crucial to better understand and diagnose diseases linked to arrhythmias. This work presents an ultrafast acoustoelectric imaging (UAI) system for direct and non-invasive ultrafast mapping of propagating current densities using the acoustoelectric effect. Acoustoelectric imaging is based on the acoustoelectric effect, the modulation of the medium’s electrical impedance by a propagating ultrasonic wave. UAI triggers this effect with plane wave emissions to image current densities. An ultrasound research platform was fitted with electrodes connected to high common-mode rejection ratio amplifiers and sampled by up to 128 independent channels. The sequences developed allow for both real-time display of acoustoelectric maps and long ultrafast acquisition with fast off-line processing. The system was evaluated by injecting controlled currents into a saline pool via copper wire electrodes. Sensitivity to low current and low acoustic pressure were measured independently. Contrast and spatial resolution were measured for varying numbers of plane waves and compared to line per line acoustoelectric imaging with focused beams at equivalent peak pressure. Temporal resolution was assessed by measuring time-varying current densities associated with sinusoidal currents. Complex intensity distributions were also imaged in 3D. Electrical current densities were detected for injected currents as low as 0.56 mA. UAI outperformed conventional focused acoustoelectric imaging in terms of contrast and spatial resolution when using 3 and 13 plane waves or more, respectively. Neighboring sinusoidal currents with opposed phases were accurately imaged and separated. Time-varying currents were mapped and their frequency accurately measured for imaging frame rates up to 500 Hz. Finally, a 3D image of a complex intensity distribution was obtained. The results demonstrated the high sensitivity of the UAI system proposed. The plane wave

  3. Quantitative assessment of the impact of biomedical image acquisition on the results obtained from image analysis and processing.

    Science.gov (United States)

    Koprowski, Robert

    2014-07-04

    Dedicated, automatic algorithms for image analysis and processing are becoming more and more common in medical diagnosis. When creating dedicated algorithms, many factors must be taken into consideration. They are associated with selecting the appropriate algorithm parameters and taking into account the impact of data acquisition on the results obtained. An important feature of algorithms is the possibility of their use in other medical units by other operators. This problem, namely operator's (acquisition) impact on the results obtained from image analysis and processing, has been shown on a few examples. The analysed images were obtained from a variety of medical devices such as thermal imaging, tomography devices and those working in visible light. The objects of imaging were cellular elements, the anterior segment and fundus of the eye, postural defects and others. In total, almost 200'000 images coming from 8 different medical units were analysed. All image analysis algorithms were implemented in C and Matlab. For various algorithms and methods of medical imaging, the impact of image acquisition on the results obtained is different. There are different levels of algorithm sensitivity to changes in the parameters, for example: (1) for microscope settings and the brightness assessment of cellular elements there is a difference of 8%; (2) for the thyroid ultrasound images there is a difference in marking the thyroid lobe area which results in a brightness assessment difference of 2%. The method of image acquisition in image analysis and processing also affects: (3) the accuracy of determining the temperature in the characteristic areas on the patient's back for the thermal method - error of 31%; (4) the accuracy of finding characteristic points in photogrammetric images when evaluating postural defects - error of 11%; (5) the accuracy of performing ablative and non-ablative treatments in cosmetology - error of 18% for the nose, 10% for the cheeks, and 7% for the

  4. Dynamic Nuclear Polarization at low temperature and high magnetic eld for biomedical applications in Magnetic Resonance Spectroscopic Imaging

    International Nuclear Information System (INIS)

    Goutailler, Florent

    2011-01-01

    The aim of this thesis work was to design, build and optimize a large volume multi-samples DNP (Dynamic Nuclear Polarization) polarizer dedicated to Magnetic Resonance Spectroscopic Imaging applications. The experimental system is made up of a high magnetic field magnet (3,35 T) in which takes place a cryogenic system with a pumped bath of liquid helium ( 4 He) allowing temperatures lower than 1,2 K. A set of inserts is used for the different steps of DNP: irradiation of the sample by a microwave field (f=94 GHz and P=50 mW), polarization measurement by Nuclear Magnetic Resonance... With this system, up to three samples of 1 mL volume can be polarized to a rate of few per-cents. The system has a long autonomy of four hours, so it can be used for polarizing molecules with a long time constant of polarization. Finally, the possibility to get quasi-simultaneously, after dissolution, several samples with a high rate of polarization opens the way of new applications in biomedical imaging. (author) [fr

  5. Extending the XNAT archive tool for image and analysis management in ophthalmology research

    Science.gov (United States)

    Wahle, Andreas; Lee, Kyungmoo; Harding, Adam T.; Garvin, Mona K.; Niemeijer, Meindert; Sonka, Milan; Abràmoff, Michael D.

    2013-03-01

    In ophthalmology, various modalities and tests are utilized to obtain vital information on the eye's structure and function. For example, optical coherence tomography (OCT) is utilized to diagnose, screen, and aid treatment of eye diseases like macular degeneration or glaucoma. Such data are complemented by photographic retinal fundus images and functional tests on the visual field. DICOM isn't widely used yet, though, and frequently images are encoded in proprietary formats. The eXtensible Neuroimaging Archive Tool (XNAT) is an open-source NIH-funded framework for research PACS and is in use at the University of Iowa for neurological research applications. Its use for ophthalmology was hence desirable but posed new challenges due to data types thus far not considered and the lack of standardized formats. We developed custom tools for data types not natively recognized by XNAT itself using XNAT's low-level REST API. Vendor-provided tools can be included as necessary to convert proprietary data sets into valid DICOM. Clients can access the data in a standardized format while still retaining the original format if needed by specific analysis tools. With respective project-specific permissions, results like segmentations or quantitative evaluations can be stored as additional resources to previously uploaded datasets. Applications can use our abstract-level Python or C/C++ API to communicate with the XNAT instance. This paper describes concepts and details of the designed upload script templates, which can be customized to the needs of specific projects, and the novel client-side communication API which allows integration into new or existing research applications.

  6. Robust detection and segmentation of cell nuclei in biomedical images based on a computational topology framework.

    Science.gov (United States)

    Rojas-Moraleda, Rodrigo; Xiong, Wei; Halama, Niels; Breitkopf-Heinlein, Katja; Dooley, Steven; Salinas, Luis; Heermann, Dieter W; Valous, Nektarios A

    2017-05-01

    The segmentation of cell nuclei is an important step towards the automated analysis of histological images. The presence of a large number of nuclei in whole-slide images necessitates methods that are computationally tractable in addition to being effective. In this work, a method is developed for the robust segmentation of cell nuclei in histological images based on the principles of persistent homology. More specifically, an abstract simplicial homology approach for image segmentation is established. Essentially, the approach deals with the persistence of disconnected sets in the image, thus identifying salient regions that express patterns of persistence. By introducing an image representation based on topological features, the task of segmentation is less dependent on variations of color or texture. This results in a novel approach that generalizes well and provides stable performance. The method conceptualizes regions of interest (cell nuclei) pertinent to their topological features in a successful manner. The time cost of the proposed approach is lower-bounded by an almost linear behavior and upper-bounded by O(n 2 ) in a worst-case scenario. Time complexity matches a quasilinear behavior which is O(n 1+ɛ ) for ε experts) and the supervised training of a random forest classifier. The results are obtained on a per-object basis. The proposed workflow successfully detected both hepatocyte and non-parenchymal cell nuclei with an accuracy of 84.6%, and hepatocyte cell nuclei only with an accuracy of 86.2%. A public histological dataset with supplied ground-truth data is also used for evaluating the performance of the proposed approach (accuracy: 94.5%). Further validations are carried out with a publicly available dataset and ground-truth data from the Gland Segmentation in Colon Histology Images Challenge (GlaS) contest. The proposed method is useful for obtaining unsupervised robust initial segmentations that can be further integrated in image/data processing

  7. Dimensionality reduction-based fusion approaches for imaging and non-imaging biomedical data: concepts, workflow, and use-cases.

    Science.gov (United States)

    Viswanath, Satish E; Tiwari, Pallavi; Lee, George; Madabhushi, Anant

    2017-01-05

    With a wide array of multi-modal, multi-protocol, and multi-scale biomedical data being routinely acquired for disease characterization, there is a pressing need for quantitative tools to combine these varied channels of information. The goal of these integrated predictors is to combine these varied sources of information, while improving on the predictive ability of any individual modality. A number of application-specific data fusion methods have been previously proposed in the literature which have attempted to reconcile the differences in dimensionalities and length scales across different modalities. Our objective in this paper was to help identify metholodological choices that need to be made in order to build a data fusion technique, as it is not always clear which strategy is optimal for a particular problem. As a comprehensive review of all possible data fusion methods was outside the scope of this paper, we have focused on fusion approaches that employ dimensionality reduction (DR). In this work, we quantitatively evaluate 4 non-overlapping existing instantiations of DR-based data fusion, within 3 different biomedical applications comprising over 100 studies. These instantiations utilized different knowledge representation and knowledge fusion methods, allowing us to examine the interplay of these modules in the context of data fusion. The use cases considered in this work involve the integration of (a) radiomics features from T2w MRI with peak area features from MR spectroscopy for identification of prostate cancer in vivo, (b) histomorphometric features (quantitative features extracted from histopathology) with protein mass spectrometry features for predicting 5 year biochemical recurrence in prostate cancer patients, and (c) volumetric measurements on T1w MRI with protein expression features to discriminate between patients with and without Alzheimers' Disease. Our preliminary results in these specific use cases indicated that the use of kernel

  8. Combining nanotechnology with current biomedical knowledge for the vascular imaging and treatment of atherosclerosis.

    Science.gov (United States)

    Slevin, M; Badimon, L; Grau-Olivares, M; Ramis, M; Sendra, J; Morrison, M; Krupinski, J

    2010-03-01

    Activation of vasa vasorum (the microvessels supplying the major arteries) at specific sites in the adventitia initiates their proliferation or 'angiogenesis' concomitant with development of atherosclerotic plaques. Haemorrhagic, leaky blood vessels from unstable plaques proliferate abnormally, are of relatively large calibre but are immature neovessels poorly invested with smooth muscle cells and possess structural weaknesses which may contribute to instability of the plaque by facilitation of inflammatory cell infiltration and haemorrhagic complications. Weak neovascular beds in plaque intima as well as activated adventitial blood vessels are potential targets for molecular imaging and targeted drug therapy, however, the majority of tested, currently available imaging and therapeutic agents have been unsuccessful because of their limited capacity to reach and remain stably within the target tissue or cells in vivo. Nanoparticle technology together with magnetic resonance imaging has allowed the possibility of imaging of neovessels in coronary or carotid plaques, and infusion of nanoparticle suspensions using infusion catheters or implant-based drug delivery represents a novel and potentially much more efficient option for treatment. This review will describe the importance of angiogenesis in mediation of plaque growth and development of plaque instability and go on to investigate the possibility of future design of superparamagnetic/perfluorocarbon-derived nanoparticles for imaging of the vasculature in this disease or which could be directed to the adventitial vasa vasorum or indeed intimal microvessels and which can release active payloads directed against primary key external mitogens and intracellular signalling molecules in endothelial cells responsible for their activation with a view to inhibition of angiogenesis.

  9. Scalable storage architecture for the archiving of medical images and information

    Science.gov (United States)

    Huang, Lu J.; Zachariah, George; Harreld, Michael R.; Valentino, Daniel J.

    1998-07-01

    Storage and archive systems are essential components of a Picture Archiving and Communication System (PACS) and become increasingly important in medical enterprise-wide information systems. Building a large-scale, long-term medical data storage system is complex, involving accurate identification of system requirements, judicious tradeoff between flexibility and complexity and effective execution of implementation plans. The proposed object-oriented software architecture fulfills the key system requirements, while maintains a high degree of flexibility for extending and customizing the framework in various medical data archive application areas. The complexity in developing such a framework has been proven manageable with various prototypes.

  10. [Biomedical informatics].

    Science.gov (United States)

    Capurro, Daniel; Soto, Mauricio; Vivent, Macarena; Lopetegui, Marcelo; Herskovic, Jorge R

    2011-12-01

    Biomedical Informatics is a new discipline that arose from the need to incorporate information technologies to the generation, storage, distribution and analysis of information in the domain of biomedical sciences. This discipline comprises basic biomedical informatics, and public health informatics. The development of the discipline in Chile has been modest and most projects have originated from the interest of individual people or institutions, without a systematic and coordinated national development. Considering the unique features of health care system of our country, research in the area of biomedical informatics is becoming an imperative.

  11. Topology-guided deformable registration with local importance preservation for biomedical images

    Science.gov (United States)

    Zheng, Chaojie; Wang, Xiuying; Zeng, Shan; Zhou, Jianlong; Yin, Yong; Feng, Dagan; Fulham, Michael

    2018-01-01

    The demons registration (DR) model is well recognized for its deformation capability. However, it might lead to misregistration due to erroneous diffusion direction when there are no overlaps between corresponding regions. We propose a novel registration energy function, introducing topology energy, and incorporating a local energy function into the DR in a progressive registration scheme, to address these shortcomings. The topology energy that is derived from the topological information of the images serves as a direction inference to guide diffusion transformation to retain the merits of DR. The local energy constrains the deformation disparity of neighbouring pixels to maintain important local texture and density features. The energy function is minimized in a progressive scheme steered by a topology tree graph and we refer to it as topology-guided deformable registration (TDR). We validated our TDR on 20 pairs of synthetic images with Gaussian noise, 20 phantom PET images with artificial deformations and 12 pairs of clinical PET-CT studies. We compared it to three methods: (1) free-form deformation registration method, (2) energy-based DR and (3) multi-resolution DR. The experimental results show that our TDR outperformed the other three methods in regard to structural correspondence and preservation of the local important information including texture and density, while retaining global correspondence.

  12. Thermoacoustic Emission Induced by Deeply-Penetrating Radiation and its Application to Biomedical Imaging.

    Science.gov (United States)

    Liew, Soo Chin

    Thermoacoustic emissions induced by 2450 MHz microwave pulses in water, tissue-simulating phantoms and dog kidneys have been detected. The analytic signal magnitude has been employed in generating 'A-mode' images with excellent depth resolution. Thermoacoustic emissions have also been detected from the dose-gradient at the beam edges of a 4 MeV x-ray beam in water. These results establish the feasibility of employing thermoacoustic signals in generating diagnostic images, and in locating x-ray beam edges during radiation therapy. A theoretical model for thermoacoustic imaging using a directional transducer has been developed, which may be used in the design of future thermoacoustic imaging system, and in facilitating comparisons with other types of imaging systems. A method of characterizing biological tissues has been proposed, which relates the power spectrum of the detected thermoacoustic signals to the autocorrelation function of the thermoacoustic source distribution in the tissues. The temperature dependence of acoustic signals induced by microwave pulses in water has been investigated. The signal amplitudes vary with temperature as the thermal expansion of water, except near 4^circ C. The signal waveforms show a gradual phase change as the temperature changes from below 4^ circ to above 4^circ C. This anomaly is due to the presence of a nonthermal component detected near 4^circC, whose waveform is similar to the derivative of the room temperature signal. The results are compared to a model based on a nonequilibrium relaxation mechanism proposed by Pierce and Hsieh. The relaxation time was found to be (0.20 +/- 0.02) ns and (0.13 +/- 0.02) ns for 200 ns and 400 ns microwave pulse widths, respectively. A microwave-induced thermoacoustic source capable of launching large aperture, unipolar ultrasonic plane wave pulses in water has been constructed. This source consists of a thin water layer trapped between two dielectric media. Due to the large mismatch in the

  13. From Metric Image Archives to Point Cloud Reconstruction: Case Study of the Great Mosque of Aleppo in Syria

    Science.gov (United States)

    Grussenmeyer, P.; Khalil, O. Al

    2017-08-01

    The paper presents photogrammetric archives from Aleppo (Syria), collected between 1999 and 2002 by the Committee for maintenance and restoration of the Great Mosque in partnership with the Engineering Unit of the University of Aleppo. During that period, terrestrial photogrammetric data and geodetic surveys of the Great Omayyad mosque were recorded for documentation purposes and geotechnical studies. During the recent war in Syria, the Mosque has unfortunately been seriously damaged and its minaret has been completely destroyed. The paper presents a summary of the documentation available from the past projects as well as solutions of 3D reconstruction based on the processing of the photogrammetric archives with the latest 3D image-based techniques.

  14. FROM METRIC IMAGE ARCHIVES TO POINT CLOUD RECONSTRUCTION: CASE STUDY OF THE GREAT MOSQUE OF ALEPPO IN SYRIA

    Directory of Open Access Journals (Sweden)

    P. Grussenmeyer

    2017-08-01

    Full Text Available The paper presents photogrammetric archives from Aleppo (Syria, collected between 1999 and 2002 by the Committee for maintenance and restoration of the Great Mosque in partnership with the Engineering Unit of the University of Aleppo. During that period, terrestrial photogrammetric data and geodetic surveys of the Great Omayyad mosque were recorded for documentation purposes and geotechnical studies. During the recent war in Syria, the Mosque has unfortunately been seriously damaged and its minaret has been completely destroyed. The paper presents a summary of the documentation available from the past projects as well as solutions of 3D reconstruction based on the processing of the photogrammetric archives with the latest 3D image-based techniques.

  15. Developing Generic Image Search Strategies for Large Astronomical Data Sets and Archives using Convolutional Neural Networks and Transfer Learning

    Science.gov (United States)

    Peek, Joshua E. G.; Hargis, Jonathan R.; Jones, Craig R.

    2018-01-01

    Astronomical instruments produce petabytes of images every year, vastly more than can be inspected by a member of the astronomical community in search of a specific population of structures. Fortunately, the sky is mostly black and source extraction algorithms have been developed to provide searchable catalogs of unconfused sources like stars and galaxies. These tools often fail for studies of more diffuse structures like the interstellar medium and unresolved stellar structures in nearby galaxies, leaving astronomers interested in observations of photodissociation regions, stellar clusters, diffuse interstellar clouds without the crucial ability to search. In this work we present a new path forward for finding structures in large data sets similar to an input structure using convolutional neural networks, transfer learning, and machine learning clustering techniques. We show applications to archival data in the Mikulski Archive for Space Telescopes (MAST).

  16. Numerical Solution of Diffusion Models in Biomedical Imaging on Multicore Processors

    Directory of Open Access Journals (Sweden)

    Luisa D'Amore

    2011-01-01

    Full Text Available In this paper, we consider nonlinear partial differential equations (PDEs of diffusion/advection type underlying most problems in image analysis. As case study, we address the segmentation of medical structures. We perform a comparative study of numerical algorithms arising from using the semi-implicit and the fully implicit discretization schemes. Comparison criteria take into account both the accuracy and the efficiency of the algorithms. As measure of accuracy, we consider the Hausdorff distance and the residuals of numerical solvers, while as measure of efficiency we consider convergence history, execution time, speedup, and parallel efficiency. This analysis is carried out in a multicore-based parallel computing environment.

  17. Brucellar spondylitis: evaluation by NMR imaging, CT and biomedical radiography - a case report

    International Nuclear Information System (INIS)

    Campos, Juliana C. de; Marins, Jose Luiz C.; Pereira, Rubens Marcondes

    1999-01-01

    A 50-year-old white woman presented with a 4-month history of low pain with lower extremity irradiation. Image studies showed inflammatory changes of the vertebral bodies and invertebral disk at L3-L4 level. Considering she had no previous spinal surgery, negative tests for tuberculosis and a positive history of exposure to brucellosis, further studies were done, and the serologic tests were positive for brucellar antibodies. Follow-up studies within the first two months demonstrated the progressive spinal changes in brucellar spondylitis. (author)

  18. Nanodiamonds as novel nanomaterials for biomedical applications: drug delivery and imaging systems.

    Science.gov (United States)

    Kaur, Randeep; Badea, Ildiko

    2013-01-01

    Detonation nanodiamonds (NDs) are emerging as delivery vehicles for small chemical drugs and macromolecular biotechnology products due to their primary particle size of 4 to 5 nm, stable inert core, reactive surface, and ability to form hydrogels. Nanoprobe technology capitalizes on the intrinsic fluorescence, high refractive index, and unique Raman signal of the NDs, rendering them attractive for in vitro and in vivo imaging applications. This review provides a brief introduction of the various types of NDs and describes the development of procedures that have led to stable single-digit-sized ND dispersions, a crucial feature for drug delivery systems and nanoprobes. Various approaches used for functionalizing the surface of NDs are highlighted, along with a discussion of their biocompatibility status. The utilization of NDs to provide sustained release and improve the dispersion of hydrophobic molecules, of which chemotherapeutic drugs are the most investigated, is described. The prospects of improving the intracellular delivery of nucleic acids by using NDs as a platform are exemplified. The photoluminescent and optical scattering properties of NDs, together with their applications in cellular labeling, are also reviewed. Considering the progress that has been made in understanding the properties of NDs, they can be envisioned as highly efficient drug delivery and imaging biomaterials for use in animals and humans.

  19. Nanodiamonds as novel nanomaterials for biomedical applications: drug delivery and imaging systems

    Directory of Open Access Journals (Sweden)

    Kaur R

    2013-01-01

    Full Text Available Randeep Kaur, Ildiko BadeaDrug Design and Discovery Research Group, College of Pharmacy and Nutrition, University of Saskatchewan, Saskatoon, Saskatchewan, CanadaAbstract: Detonation nanodiamonds (NDs are emerging as delivery vehicles for small chemical drugs and macromolecular biotechnology products due to their primary particle size of 4 to 5 nm, stable inert core, reactive surface, and ability to form hydrogels. Nanoprobe technology capitalizes on the intrinsic fluorescence, high refractive index, and unique Raman signal of the NDs, rendering them attractive for in vitro and in vivo imaging applications. This review provides a brief introduction of the various types of NDs and describes the development of procedures that have led to stable single-digit-sized ND dispersions, a crucial feature for drug delivery systems and nanoprobes. Various approaches used for functionalizing the surface of NDs are highlighted, along with a discussion of their biocompatibility status. The utilization of NDs to provide sustained release and improve the dispersion of hydrophobic molecules, of which chemotherapeutic drugs are the most investigated, is described. The prospects of improving the intracellular delivery of nucleic acids by using NDs as a platform are exemplified. The photoluminescent and optical scattering properties of NDs, together with their applications in cellular labeling, are also reviewed. Considering the progress that has been made in understanding the properties of NDs, they can be envisioned as highly efficient drug delivery and imaging biomaterials for use in animals and humans.Keywords: dispersion, surface functionalization, toxicity, carriers, fluorescence, light scattering

  20. Advances in digital SiPMs and their application in biomedical imaging

    Energy Technology Data Exchange (ETDEWEB)

    Schaart, Dennis R., E-mail: d.r.schaart@tudelft.nl [Delft University of Technology, Faculty of Applied Sciences, Radiation Science and Technology, Mekelweg 15, 2629 JB Delft (Netherlands); Charbon, Edoardo [Delft University of Technology, Faculty of Electrical Engineering, Circuits and Systems, Mekelweg 4, 2628 CD Delft (Netherlands); Frach, Thomas [Philips Digital Photon Counting, Pauwelsstraße 17, 52074 Aachen (Germany); Schulz, Volkmar [Department for Physics of Molecular Imaging Systems, Institute for Experimental Molecular Imaging, RWTH Aachen University, Germany and Philips Research Europe, Aachen (Germany)

    2016-02-11

    Similar to analog silicon photomultipliers (SiPMs), digital SiPMs (dSiPMs) essentially consist of an array of single-photon avalanche photodiodes (SPADs). Instead of a passive quench resistor, however, an active quenching circuit is locally integrated with each SPAD, making the sensor response faster and less sensitive to the gains of the individual SPADs. Moreover, additional circuits for the fully digital acquisition, processing, and readout of optical signals are integrated within the sensor. As a result, dSiPMs offer high photo-detection efficiency, high single-photon time resolution (SPTR), and high uniformity, as well as many practical advantages, such as a very compact form factor, low voltage operation, magnetic field compatibility, high stability of operation, low gain drift, and a high degree of scalability. At the same time, dSiPMs represent a new paradigm in low-level light sensing technology. That is, their fully digital operation makes them true photon counting devices, preserving at least partly the discrete spatio-temporal structure of the information embedded in the optical signal. This means that the operation of dSiPMs can be fully understood only in statistical terms, but also opens up novel possibilities for extracting information from the measured data. So far, the main driver behind the development of dSiPMs has been the detection of scintillation pulses in detectors for time-of-flight (TOF) positron emission tomography (PET). Several types of dSiPM have been developed in recent years. Moreover, first imaging devices based on dSiPMs have been realized by various groups. This review summarizes the main dSiPM concepts and technologies currently under development, provides an overview of the results obtained recently with dSiPMs-based PET and SPECT devices, and presents a critical outlook on the challenges and chances for dSiPMs in future radiomolecular imaging systems.

  1. Imaging, scattering, and spectroscopic systems for biomedical optics: Tools for bench top and clinical applications

    Science.gov (United States)

    Cottrell, William J.

    Optical advances have had a profound impact on biology and medicine. The capabilities range from sensing biological analytes to whole animal and subcellular imaging and clinical therapies. The work presented in this thesis describes three independent and multifunctional optical systems, which explore clinical therapy at the tissue level, biological structure at the cell/organelle level, and the function of underlying fundamental cellular processes. First, we present a portable clinical instrument for delivering delta-aminolevulinic acid photodynamic therapy (ALA-PDT) while performing noninvasive spectroscopic monitoring in vivo. Using an off-surface probe, the instrument delivered the treatment beam to a user-defined field on the skin and performed reflectance and fluorescence spectroscopies at two regions within this field. The instrument was used to monitor photosensitizer fluorescence photobleaching, fluorescent photoproduct kinetics, and blood oxygen saturation during a clinical ALA-PDT trial on superficial basal cell carcinoma (sBCC). Protoporphyrin IX and photoproduct fluorescence excited by the 632.8 nm PDT treatment laser was collected between 665 and 775 nm. During a series of brief treatment interruptions at programmable time points, white-light reflectance spectra between 475 and 775 nm were acquired. Fluorescence spectra were corrected for the effects of absorption and scattering, informed by the reflectance measurements, and then decomposed into known fluorophore contributions in real time using a robust singular-value decomposition fitting routine. Reflectance spectra additionally provided information on hemoglobin oxygen saturation. We next describe the incorporation of this instrument into clinical trials at Roswell Park Cancer Institute (Buffalo, NY). In this trial we examined the effects of light irradiance on photodynamic efficiency and pain. The rate of singlet-oxygen production depends on the product of irradiance and photosensitizer and oxygen

  2. Download - FANTOM5 | LSDB Archive [Life Science Database Archive metadata

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  13. Download - RPSD | LSDB Archive [Life Science Database Archive metadata

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  14. Contrast agent based on nano-emulsion for targeted biomedical imaging

    International Nuclear Information System (INIS)

    Attia, Mohamed

    2016-01-01

    X-ray imaging agents are essential in combination with X-ray computed tomography to improve contrast enhancement aiming at providing complete visualization of blood vessels and giving structural and functional information on lesions allowing the detection of a tumor. As well as it is fundamental tool to discriminate between healthy cells and pathogens. We successfully limit the problems presented in commercial X-ray contrast agents like poor contrasting in Fenestra VC associated with short blood circulation time and to avoid rapid renal elimination from the body as found in Xenetix (Iobitriol). We developed nontoxic and blood pool iodine-containing nano-emulsion contrast agents serving in preclinical X-ray μ-CT imaging such as, a- Tocopherol (vitamin E), Cholecalciferol (vitamin D3), Castor oil, Capmul MCMC8 oil and oleic acid. Those formulated nano emulsions were prepared by low energy spontaneous emulsification technic with slight modification for each platform. They showed new specific features rendering them promising agents in in vivo experiments as improving the balance between the efficacy and the toxicity of targeted therapeutic interventions. We investigate the effect of size and the chemical composition of the nanoparticles on their biodistribution, pharmacokinetics and toxicity. They demonstrated that the chemical structures of the droplet's cores have significant role in targeting for example vitamin E was mainly accumulated in liver and castor oil formulation was passively accumulated in spleen explaining the proof-of-concept of EPR effect. On the other hand, two different platform sizes of Cholecalciferol molecule revealing that no real impact on the pharmacokinetics and biodistribution but presented remarkable effect on the toxicity. Of particular interest is studying the effect of the surface charge of nanoparticles on their biodistribution, this is why oleic acid nano-emulsion was selected to proceed this study by presence of amphiphilic

  15. A classification framework for content-based extraction of biomedical objects from hierarchically decomposed images

    Science.gov (United States)

    Thies, Christian; Schmidt Borreda, Marcel; Seidl, Thomas; Lehmann, Thomas M.

    2006-03-01

    Multiscale analysis provides a complete hierarchical partitioning of images into visually plausible regions. Each of them is formally characterized by a feature vector describing shape, texture and scale properties. Consequently, object extraction becomes a classification of the feature vectors. Classifiers are trained by relevant and irrelevant regions labeled as object and remaining partitions, respectively. A trained classifier is applicable to yet uncategorized partitionings to identify the corresponding region's classes. Such an approach enables retrieval of a-priori unknown objects within a point-and-click interface. In this work, the classification pipeline consists of a framework for data selection, feature selection, classifier training, classification of testing data, and evaluation. According to the no-free-lunch-theorem of supervised learning, the appropriate classification pipeline is determined experimentally. Therefore, each of the steps is varied by state-of-the-art methods and the respective classification quality is measured. Selection of training data from the ground truth is supported by bootstrapping, variance pooling, virtual training data, and cross validation. Feature selection for dimension reduction is performed by linear discriminant analysis, principal component analysis, and greedy selection. Competing classifiers are k-nearest-neighbor, Bayesian classifier, and the support vector machine. Quality is measured by precision and recall to reflect the retrieval task. A set of 105 hand radiographs from clinical routine serves as ground truth, where the metacarpal bones have been labeled manually. In total, 368 out of 39.017 regions are identified as relevant. In initial experiments for feature selection with the support vector machine have been obtained recall, precision and F-measure of 0.58, 0.67, and 0,62, respectively.

  16. Experiences with archived raw diffraction images data: capturing cisplatin after chemical conversion of carboplatin in high salt conditions for a protein crystal

    International Nuclear Information System (INIS)

    Tanley, Simon W. M.; Diederichs, Kay; Kroon-Batenburg, Loes M. J.; Schreurs, Antoine M. M.; Helliwell, John R.

    2013-01-01

    Archiving of raw diffraction images data has led to new structural chemistry information being obtained for previously published results, which leads to the conclusion that carboplatin has partially converted to cisplatin in the high NaCl concentration conditions used in the crystallization procedure. The archiving of raw diffraction images data is the focus of an IUCr Diffraction Data Deposition Working Group. Experience in archiving and sharing of raw diffraction images data in collaboration between Manchester and Utrecht Universities, studying the binding of the important anti-cancer agents, cisplatin and carboplatin to histidine in a protein, has recently been published. Subsequently, these studies have been expanded due to further analyses of each data set of raw diffraction images using the diffraction data processing program XDS. The raw diffraction images, measured at Manchester University, are available for download at Utrecht University and now also mirrored at the Tardis Raw Diffraction Data Archive in Australia. Thus a direct comparison of processed diffraction and derived protein model data from XDS with the published results has been made. The issue of conversion of carboplatin to cisplatin under a high chloride salt concentration has been taken up and a detailed crystallographic assessment is provided. Overall, these new structural chemistry research results are presented followed by a short summary of developing raw data archiving policy and practicalities as well as documenting the challenge of making appropriate and detailed recording of the metadata for crystallography

  17. ARCHIVE 1

    DEFF Research Database (Denmark)

    Ingemann, Bruno

    is here used as an investigative tool too makes inquiries in everyday life and in our visual memory. This means that conceptual frames and guidelines are used to construct the gaze of the concrete projects.” The image used here is mostly photographs but also drawings, painting, video, models produced...... closer to the archive and to the museum as a storehouse or archive of objects, stories and memories. Visual memories are more than the concrete and physical picture with a structure and material used to capture or express something. The image is used to construct ways of seeing and to display ways...... of seeing in narratives. One could call these processes for memories that are drawn from the remembered - and the unremembered and hidden where the visual is used in an artistic practice to transform the unremembered and hidden into visual meaning. The five themes of projects in this book is framed...

  18. Determination of Proper Motions of Circumpolar Stars by Using Images from Ukrvo Plate Archives

    Science.gov (United States)

    Protsyuk, Yu.; Andruk, V.; Mazhaev, A.; Kovylianska, O.; Protsyuk, S.; Golovnya, V.

    UkrVO plate archives contain informationobtained at different time periods and in different observatories for the same regions of the sky [3, 5, 6, 7, 8]. It allows us to carry out joint processing of plates and to receive new results for interesting objects. To obtain proper motions of stars in circumpolar areas, we selected 34 photographic plates from the RI NAO archive and 161 plates from the archive of the MAO NAS. A mean epoch difference between the plates from these archives is 55 years. Scanning of the plates and data processing were independently carried out by both observatories. A catalog of equatorial positions for 195 thousand stars up to 15m was compiled in the RI NAO (black dots in Fig. 1). A catalog of equatorial positions for 1050 thousand stars up to 16.5m was compiled in MAO (gray dots in Fig. 1). A comparison of positions for common stars contained in these catalogs was conducted. A catalog of proper motions for 30 thousand common stars up to 15m was compiled using these two input catalogs. The obtained result suggests the advisability of processing of all observations to receive proper motions of stars up to 14-15m in the declination zone of 65° to 90°.

  19. Anatomy for Biomedical Engineers

    Science.gov (United States)

    Carmichael, Stephen W.; Robb, Richard A.

    2008-01-01

    There is a perceived need for anatomy instruction for graduate students enrolled in a biomedical engineering program. This appeared especially important for students interested in and using medical images. These students typically did not have a strong background in biology. The authors arranged for students to dissect regions of the body that…

  20. Biomedical photonics handbook biomedical diagnostics

    CERN Document Server

    Vo-Dinh, Tuan

    2014-01-01

    Shaped by Quantum Theory, Technology, and the Genomics RevolutionThe integration of photonics, electronics, biomaterials, and nanotechnology holds great promise for the future of medicine. This topic has recently experienced an explosive growth due to the noninvasive or minimally invasive nature and the cost-effectiveness of photonic modalities in medical diagnostics and therapy. The second edition of the Biomedical Photonics Handbook presents fundamental developments as well as important applications of biomedical photonics of interest to scientists, engineers, manufacturers, teachers, studen

  1. FUNCTIONALITY ASSESSMENT OF ALGORITHMS FOR THE COLORING OF IMAGES IN TERMS OF INCREASING RADIOMETRIC VALUES OF AERIAL PHOTOGRAPHS ARCHIVES

    Directory of Open Access Journals (Sweden)

    Ewiak Ireneusz

    2016-12-01

    Full Text Available Available on the commercial market are a number of algorithms that enable assigning to pixels of a monochrome digital image suitable colors according to a strictly defined schedule. These algorithms have been recently used by professional film studios involved in the coloring of archival productions. This article provides an overview on the functionality of coloring algorithms in terms of their use to improve the interpretation quality of historical, black - and - white aerial photographs. The analysis covered intuitive (Recolored programs, as well as more advanced (Adobe After Effect, DaVinci Resolve programs. The use of their full functionality was limited by the too large information capacity of aerial photograph images. Black - and - white historical aerial photographs, which interpretation quality in many cases does not meet the criteria posed on photogrammetric developments, require an increase of their readability. The solution in this regard may be the process of coloring images. The authors of this article conducted studies aimed to determine to what extent the tested coloring algorithms enable an automatic detection of land cover elements on historical aerial photographs and provide color close to the natural. Used in the studies were archival black - and - white aerial photographs of the western part of Warsaw district made available by the Main Centre of Geodetic and Cartographic Documentation , the selection of which was associated with the presence in this area of various elements of land cover, such as water, forests, crops, exposed soils and also anthropogenic objects. In the analysis of different algorithms are included: format and size of the image, degree of automation of the process, degree of compliance of the result and processing time. The accuracy of the coloring process was different for each class of objects mapped on the photograph. The main limitation of the coloring process created shadows of anthropogenic objects

  2. Experiences with making diffraction image data available: what metadata do we need to archive?

    Energy Technology Data Exchange (ETDEWEB)

    Kroon-Batenburg, Loes M. J., E-mail: l.m.j.kroon-batenburg@uu.nl [Utrecht University, Padualaan 8, 3584 CH Utrecht (Netherlands); Helliwell, John R. [University of Manchester, Brunswick Street, Manchester M14 9PL (United Kingdom); Utrecht University, Padualaan 8, 3584 CH Utrecht (Netherlands)

    2014-10-01

    A local raw ‘diffraction data images’ archive was made available and some data sets were retrieved and reprocessed, which led to analysis of the anomalous difference densities of two partially occupied Cl atoms in cisplatin as well as a re-evaluation of the resolution cutoff in these diffraction data. General questions on storing raw data are discussed. It is also demonstrated that often one needs unambiguous prior knowledge to read the (binary) detector format and the setup of goniometer geometries. Recently, the IUCr (International Union of Crystallography) initiated the formation of a Diffraction Data Deposition Working Group with the aim of developing standards for the representation of raw diffraction data associated with the publication of structural papers. Archiving of raw data serves several goals: to improve the record of science, to verify the reproducibility and to allow detailed checks of scientific data, safeguarding against fraud and to allow reanalysis with future improved techniques. A means of studying this issue is to submit exemplar publications with associated raw data and metadata. In a recent study of the binding of cisplatin and carboplatin to histidine in lysozyme crystals under several conditions, the possible effects of the equipment and X-ray diffraction data-processing software on the occupancies and B factors of the bound Pt compounds were compared. Initially, 35.3 GB of data were transferred from Manchester to Utrecht to be processed with EVAL. A detailed description and discussion of the availability of metadata was published in a paper that was linked to a local raw data archive at Utrecht University and also mirrored at the TARDIS raw diffraction data archive in Australia. By making these raw diffraction data sets available with the article, it is possible for the diffraction community to make their own evaluation. This led to one of the authors of XDS (K. Diederichs) to re-integrate the data from crystals that supposedly

  3. Flat Files - JSNP | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ... Data file File name: jsnp_flat_files File URL: ftp://ftp.biosciencedbc.jp/archiv...his Database Database Description Download License Update History of This Database Site Policy | Contact Us Flat Files - JSNP | LSDB Archive ...

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    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...listed. Data file File name: kome_ops_index.zip File URL: ftp://ftp.biosciencedbc.jp/archive/kome/LATEST/kom...e History of This Database Site Policy | Contact Us OPS index - KOME | LSDB Archive ...

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    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...st.zip File URL: ftp://ftp.biosciencedbc.jp/archive/red/LATEST/red_est.zip File size: 629 KB Simple search U...ase Database Description Download License Update History of This Database Site Policy | Contact Us EST data - RED | LSDB Archive ...

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    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...e URL: ftp://ftp.biosciencedbc.jp/archive/sahg/LATEST/sahg_alignment.zip File size: 12.0 MB Simple search UR...s Database Database Description Download License Update History of This Database Site Policy | Contact Us Alignment - SAHG | LSDB Archive ...

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  17. Reference - PLACE | LSDB Archive [Life Science Database Archive metadata

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    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ... as rice. Data file File name: rpsd_main_sjis.zip File URL: ftp://ftp.biosciencedbc.jp/archive/rpsd/LATEST/r.../ftp.biosciencedbc.jp/archive/rpsd/LATEST/rpsd_main_utf8.zip File size: 120 KB Simple search URL http://togo...nse Update History of This Database Site Policy | Contact Us Main - RPSD | LSDB Archive ...

  19. Biomedical Engineering

    CERN Document Server

    Suh, Sang C; Tanik, Murat M

    2011-01-01

    Biomedical Engineering: Health Care Systems, Technology and Techniques is an edited volume with contributions from world experts. It provides readers with unique contributions related to current research and future healthcare systems. Practitioners and researchers focused on computer science, bioinformatics, engineering and medicine will find this book a valuable reference.

  20. Biomedical informatics and translational medicine

    Directory of Open Access Journals (Sweden)

    Sarkar Indra

    2010-02-01

    Full Text Available Abstract Biomedical informatics involves a core set of methodologies that can provide a foundation for crossing the "translational barriers" associated with translational medicine. To this end, the fundamental aspects of biomedical informatics (e.g., bioinformatics, imaging informatics, clinical informatics, and public health informatics may be essential in helping improve the ability to bring basic research findings to the bedside, evaluate the efficacy of interventions across communities, and enable the assessment of the eventual impact of translational medicine innovations on health policies. Here, a brief description is provided for a selection of key biomedical informatics topics (Decision Support, Natural Language Processing, Standards, Information Retrieval, and Electronic Health Records and their relevance to translational medicine. Based on contributions and advancements in each of these topic areas, the article proposes that biomedical informatics practitioners ("biomedical informaticians" can be essential members of translational medicine teams.

  1. Biomedical informatics and translational medicine.

    Science.gov (United States)

    Sarkar, Indra Neil

    2010-02-26

    Biomedical informatics involves a core set of methodologies that can provide a foundation for crossing the "translational barriers" associated with translational medicine. To this end, the fundamental aspects of biomedical informatics (e.g., bioinformatics, imaging informatics, clinical informatics, and public health informatics) may be essential in helping improve the ability to bring basic research findings to the bedside, evaluate the efficacy of interventions across communities, and enable the assessment of the eventual impact of translational medicine innovations on health policies. Here, a brief description is provided for a selection of key biomedical informatics topics (Decision Support, Natural Language Processing, Standards, Information Retrieval, and Electronic Health Records) and their relevance to translational medicine. Based on contributions and advancements in each of these topic areas, the article proposes that biomedical informatics practitioners ("biomedical informaticians") can be essential members of translational medicine teams.

  2. MOC SDP ARCHIVE

    Data.gov (United States)

    National Aeronautics and Space Administration — This data set contains portions of the MOC Standard Data Product (SDP) Archive, a collection of compressed image data from the Mars Orbiter Camera on the Mars Global...

  3. MOC DSDP ARCHIVE

    Data.gov (United States)

    National Aeronautics and Space Administration — This data set contains portions of the MOC Decompressed Standard Data Product (DSDP) Archive, a collection of decompressed images from the Mars Orbiter Camera on the...

  4. Accessing Biomedical Literature in the Current Information Landscape

    OpenAIRE

    Khare, Ritu; Leaman, Robert; Lu, Zhiyong

    2014-01-01

    Biomedical and life sciences literature is unique because of its exponentially increasing volume and interdisciplinary nature. Biomedical literature access is essential for several types of users including biomedical researchers, clinicians, database curators, and bibliometricians. In the past few decades, several online search tools and literature archives, generic as well as biomedicine-specific, have been developed. We present this chapter in the light of three consecutive steps of literat...

  5. Biomedical Applications of Graphene

    Science.gov (United States)

    Shen, He; Zhang, Liming; Liu, Min; Zhang, Zhijun

    2012-01-01

    Graphene exhibits unique 2-D structure and exceptional phyiscal and chemical properties that lead to many potential applications. Among various applications, biomedical applications of graphene have attracted ever-increasing interests over the last three years. In this review, we present an overview of current advances in applications of graphene in biomedicine with focus on drug delivery, cancer therapy and biological imaging, together with a brief discussion on the challenges and perspectives for future research in this field. PMID:22448195

  6. Archives: African Journal of Biomedical Research

    African Journals Online (AJOL)

    Items 1 - 50 of 52 ... Algeria (5); Benin (2); Botswana (3); Burkina Faso (3); Cameroon (8); Congo, Republic (1); Côte d'Ivoire (4); Egypt, Arab Rep. (14); Eritrea (1); Ethiopia (30); Ghana (27); Kenya (29); Lesotho (1); Libya (2); Madagascar (1); Malawi (4); Mauritius (3); Mozambique (1); Nigeria (221); Rwanda (3); Senegal (6) ...

  7. Archives of Medical and Biomedical Research: Submissions

    African Journals Online (AJOL)

    Do not use abbreviations for keywords. Text Headings should be appropriate to the nature of the paper. For original research papers, text should be organized as Introduction, Methodology, Results, Discussion, Conclusion and References. For case reports, the author should organize the text as Introduction, Case details, ...

  8. Art and archives: an archival perspective

    Directory of Open Access Journals (Sweden)

    Yvon Lemay

    2009-01-01

    Full Text Available Many contemporary artists have used archives in their works since the end of the 1980s. However this artistic trend has not been really discussed by the archivists until now. The intention of this article is to present the main outlines of a research project on the artistic use of archives by contemporary artists, more specifically of photographic images. In the first time, a review of the literature will show the importance of the phenomena in the artistic field. Then, a typology with the aim of showing the preoccupations of the artists and the orientations of their production is sketched out. Thirdly, we give five reasons to be interested in this new exploitation of archives from an archivist point of view. We will finish by underlining the contribution of this project to the advancement of the archival science and the contextual approach of our research.

  9. A reference dataset for deformable image registration spatial accuracy evaluation using the COPDgene study archive

    International Nuclear Information System (INIS)

    Castillo, Richard; Castillo, Edward; Wood, Abbie M; Ludwig, Michelle S; Guerrero, Thomas; Fuentes, David; Ahmad, Moiz

    2013-01-01

    Landmark point-pairs provide a strategy to assess deformable image registration (DIR) accuracy in terms of the spatial registration of the underlying anatomy depicted in medical images. In this study, we propose to augment a publicly available database (www.dir-lab.com) of medical images with large sets of manually identified anatomic feature pairs between breath-hold computed tomography (BH-CT) images for DIR spatial accuracy evaluation. Ten BH-CT image pairs were randomly selected from the COPDgene study cases. Each patient had received CT imaging of the entire thorax in the supine position at one-fourth dose normal expiration and maximum effort full dose inspiration. Using dedicated in-house software, an imaging expert manually identified large sets of anatomic feature pairs between images. Estimates of inter- and intra-observer spatial variation in feature localization were determined by repeat measurements of multiple observers over subsets of randomly selected features. 7298 anatomic landmark features were manually paired between the 10 sets of images. Quantity of feature pairs per case ranged from 447 to 1172. Average 3D Euclidean landmark displacements varied substantially among cases, ranging from 12.29 (SD: 6.39) to 30.90 (SD: 14.05) mm. Repeat registration of uniformly sampled subsets of 150 landmarks for each case yielded estimates of observer localization error, which ranged in average from 0.58 (SD: 0.87) to 1.06 (SD: 2.38) mm for each case. The additions to the online web database (www.dir-lab.com) described in this work will broaden the applicability of the reference data, providing a freely available common dataset for targeted critical evaluation of DIR spatial accuracy performance in multiple clinical settings. Estimates of observer variance in feature localization suggest consistent spatial accuracy for all observers across both four-dimensional CT and COPDgene patient cohorts. (paper)

  10. Incorporating the APS Catalog of the POSS I and Image Archive in ADS

    Science.gov (United States)

    Humphreys, Roberta M.

    1998-01-01

    The primary purpose of this contract was to develop the software to both create and access an on-line database of images from digital scans of the Palomar Sky Survey. This required modifying our DBMS (called Star Base) to create an image database from the actual raw pixel data from the scans. The digitized images are processed into a set of coordinate-reference index and pixel files that are stored in run-length files, thus achieving an efficient lossless compression. For efficiency and ease of referencing, each digitized POSS I plate is then divided into 900 subplates. Our custom DBMS maps each query into the corresponding POSS plate(s) and subplate(s). All images from the appropriate subplates are retrieved from disk with byte-offsets taken from the index files. These are assembled on-the-fly into a GIF image file for browser display, and a FITS format image file for retrieval. The FITS images have a pixel size of 0.33 arcseconds. The FITS header contains astrometric and photometric information. This method keeps the disk requirements manageable while allowing for future improvements. When complete, the APS Image Database will contain over 130 Gb of data. A set of web pages query forms are available on-line, as well as an on-line tutorial and documentation. The database is distributed to the Internet by a high-speed SGI server and a high-bandwidth disk system. URL is http://aps.umn.edu/IDB/. The image database software is written in perl and C and has been compiled on SGI computers with MIX5.3. A copy of the written documentation is included and the software is on the accompanying exabyte tape.

  11. Bioinspired Polarization Imaging Sensors: From Circuits and Optics to Signal Processing Algorithms and Biomedical Applications: Analysis at the focal plane emulates nature's method in sensors to image and diagnose with polarized light.

    Science.gov (United States)

    York, Timothy; Powell, Samuel B; Gao, Shengkui; Kahan, Lindsey; Charanya, Tauseef; Saha, Debajit; Roberts, Nicholas W; Cronin, Thomas W; Marshall, Justin; Achilefu, Samuel; Lake, Spencer P; Raman, Baranidharan; Gruev, Viktor

    2014-10-01

    In this paper, we present recent work on bioinspired polarization imaging sensors and their applications in biomedicine. In particular, we focus on three different aspects of these sensors. First, we describe the electro-optical challenges in realizing a bioinspired polarization imager, and in particular, we provide a detailed description of a recent low-power complementary metal-oxide-semiconductor (CMOS) polarization imager. Second, we focus on signal processing algorithms tailored for this new class of bioinspired polarization imaging sensors, such as calibration and interpolation. Third, the emergence of these sensors has enabled rapid progress in characterizing polarization signals and environmental parameters in nature, as well as several biomedical areas, such as label-free optical neural recording, dynamic tissue strength analysis, and early diagnosis of flat cancerous lesions in a murine colorectal tumor model. We highlight results obtained from these three areas and discuss future applications for these sensors.

  12. Retratos do Brasil: uma coleção do Rockefeller Archive Center Images of Brazil: a Rockefeller Archive Center collection

    Directory of Open Access Journals (Sweden)

    Aline Lopes de Lacerda

    2002-12-01

    Full Text Available Este artigo objetiva apresentar uma descrição comentada da coleção fotográfica sobre o Brasil pertencente aos arquivos da Fundação Rockefeller nos Estados Unidos, o Rockefeller Archive Center. Traz informações sobre a origem de tal documentação, bem como sobre as formas de sua acumulação, tendo em vista compreender o contexto de produção daqueles documentos visuais. Tais documentos dizem respeito às relações entre a Fundação Rockefeller e organismos brasileiros voltados para o combate a doenças como a febre amarela, a malária e a ancilostomíase entre os anos 1920 e 1940.This article describes and comments on the collection of photographs of Brazil that belongs to the Rockefeller Foundation archives (Rockefeller Archive Center in the United States. It also contains information about the origin of such documents and the way they were collected, as well as analyzes the context in which these visual documents were produced. They record the relationship between Rockefeller Foundation and Brazilian institutions engaged in the combat against yellow fever, malaria and ancyclostomiasis from 1920 to 1940.

  13. Archiving a feminist animation archive

    OpenAIRE

    Taylor, Rebekah

    2015-01-01

    This paper looks at the processes behind cataloguing an animation archive - Leeds Animation Workshop archive - it looks at archival processes, research opportunities, and archival description and terminology to catalogue a collection with a range of identities - including feminism, disability, and race.

  14. Chip-on-the-tip compact flexible endoscopic epifluorescence video-microscope for in-vivo imaging in medicine and biomedical research.

    Science.gov (United States)

    Matz, Gregor; Messerschmidt, Bernhard; Göbel, Werner; Filser, Severin; Betz, Christian S; Kirsch, Matthias; Uckermann, Ortrud; Kunze, Marcel; Flämig, Sven; Ehrhardt, André; Irion, Klaus-Martin; Haack, Mareike; Dorostkar, Mario M; Herms, Jochen; Gross, Herbert

    2017-07-01

    We demonstrate a 60 mg light video-endomicroscope with a cylindrical shape of the rigid tip of only 1.6 mm diameter and 6.7 mm length. A novel implementation method of the illumination unit in the endomicroscope is presented. It allows for the illumination of the biological sample with fiber-coupled LED light at 455 nm and the imaging of the red-shifted fluorescence light above 500 nm in epi-direction. A large numerical aperture of 0.7 leads to a sub-cellular resolution and yields to high-contrast images within a field of view of 160 μ m. A miniaturized chip-on-the-tip CMOS image sensor with more than 150,000 pixels captures the multicolor images at 30 fps. Considering size, plug-and-play capability, optical performance, flexibility and weight, we hence present a probe which sets a new benchmark in the field of epifluorescence endomicroscopes. Several ex-vivo and in-vivo experiments in rodents and humans suggest future application in biomedical fields, especially in the neuroscience community, as well as in medical applications targeting optical biopsies or the detection of cellular anomalies.

  15. Optical Polarizationin Biomedical Applications

    CERN Document Server

    Tuchin, Valery V; Zimnyakov, Dmitry A

    2006-01-01

    Optical Polarization in Biomedical Applications introduces key developments in optical polarization methods for quantitative studies of tissues, while presenting the theory of polarization transfer in a random medium as a basis for the quantitative description of polarized light interaction with tissues. This theory uses the modified transfer equation for Stokes parameters and predicts the polarization structure of multiple scattered optical fields. The backscattering polarization matrices (Jones matrix and Mueller matrix) important for noninvasive medical diagnostic are introduced. The text also describes a number of diagnostic techniques such as CW polarization imaging and spectroscopy, polarization microscopy and cytometry. As a new tool for medical diagnosis, optical coherent polarization tomography is analyzed. The monograph also covers a range of biomedical applications, among them cataract and glaucoma diagnostics, glucose sensing, and the detection of bacteria.

  16. Web archives

    DEFF Research Database (Denmark)

    Finnemann, Niels Ole

    2018-01-01

    This article deals with general web archives and the principles for selection of materials to be preserved. It opens with a brief overview of reasons why general web archives are needed. Section two and three present major, long termed web archive initiatives and discuss the purposes and possible...... values of web archives and asks how to meet unknown future needs, demands and concerns. Section four analyses three main principles in contemporary web archiving strategies, topic centric, domain centric and time-centric archiving strategies and section five discuss how to combine these to provide...... a broad and rich archive. Section six is concerned with inherent limitations and why web archives are always flawed. The last sections deal with the question how web archives may fit into the rapidly expanding, but fragmented landscape of digital repositories taking care of various parts...

  17. Imaging tissues for biomedical research using the high-resolution micro-tomography system nanotom® m

    Science.gov (United States)

    Deyhle, Hans; Schulz, Georg; Khimchenko, Anna; Bikis, Christos; Hieber, Simone E.; Jaquiery, Claude; Kunz, Christoph; Müller-Gerbl, Magdalena; Höchel, Sebastian; Saxer, Till; Stalder, Anja K.; Ilgenstein, Bernd; Beckmann, Felix; Thalmann, Peter; Buscema, Marzia; Rohr, Nadja; Holme, Margaret N.; Müller, Bert

    2016-10-01

    Micro computed tomography (mCT) is well established in virtually all fields of biomedical research, allowing for the non-destructive volumetric visualization of tissue morphology. A variety of specimens can be investigated, ranging from soft to hard tissue to engineered structures like scaffolds. Similarly, the size of the objects of interest ranges from a fraction of a millimeter to several tens of centimeters. While synchrotron radiation-based μCT still offers unrivaled data quality, the ever-improving technology of cathodic tube-based machines offers a valuable and more accessible alternative. The Biomaterials Science Center of the University of Basel operates a nanotomOR m (phoenix|x-ray, GE Sensing and Inspection Technologies GmbH, Wunstorf, Germany), with a 180 kV source and a minimal spot size of about 0.9 μm. Through the adjustable focus-specimen and focus-detector distances, the effective pixel size can be adjusted from below 500 nm to about 80 μm. On the high-resolution side, it is for example possible to visualize the tubular network in sub-millimeter thin dentin specimens. It is then possible to locally extract parameters such as tubule diameter, density, or alignment, giving information on cell movements during tooth formation. On the other side, with a horizontal shift of the 3,072 pixels x 2,400 pixels detector, specimens up to 35 cm in diameter can be scanned. It is possible, for example, to scan an entire human knee, albeit with inferior resolution. Lab source μCT machines are thus a powerful and flexible tool for the advancement of biomedical research, and a valuable and more accessible alternative to synchrotron radiation facilities.

  18. Update History of This Database - dbQSNP | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us dbQSNP Update History of This Database Date Update contents 2017/02/16 dbQSNP English archiv...e Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - dbQSNP | LSDB Archive ...

  19. Do physicians make their articles readable for their blind or low-vision patients? An analysis of current image processing practices in biomedical journals from the point of view of accessibility.

    Science.gov (United States)

    Splendiani, Bruno; Ribera, Mireia; Garcia, Roberto; Termens, Miquel

    2014-08-01

    Visual content in biomedical academic papers is a growing source of critical information, but it is not always fully readable for people with visual impairments. We aimed to assess current image processing practices, accessibility policies, and submission policies in a sample of 12 highly cited biomedical journals. We manually checked the application of text-based alternative image descriptions for every image in 12 articles (one for each journal). We determined whether the journals claimed to follow an accessibility policy and we reviewed their submission policy and their guidelines related to the visual content. We identified important features concerning the processing of images and the characteristics of the visual and the retrieval options of visual content offered by the publishers. The evaluation shows that the actual practices of textual image description in highly cited biomedical journals do not follow general guidelines on accessibility. The images within the articles analyzed lack alternative descriptions or have uninformative descriptions, even in the case of journals claiming to follow an accessibility policy. Consequently, the visual information of scientific articles is not accessible to people with severe visual disabilities. Instructions on image submission are heterogeneous and a declaration of accessibility guidelines was only found in two thirds of the sample of journals, with one third not explicitly following any accessibility policy, although they are required to by law.

  20. Quantitative imaging of magnetic nanoparticles by magneto-relaxometric tomography for biomedical applications; Quantitative Bildgebung magnetischer Nanopartikel mittels magnetrelaxometrischer Tomographie fuer biomedizinische Anwendungen

    Energy Technology Data Exchange (ETDEWEB)

    Liebl, Maik

    2016-11-18

    Current biomedical research focuses on the development of novel biomedical applications based on magnetic nanoparticles (MNPs), e.g. for local cancer treatment. These therapy approaches employ MNPs as remotely controlled drug carriers or local heat generators. Since location and quantity of MNPs determine drug enrichment and heat production, quantitative knowledge of the MNP distribution inside a body is essential for the development and success of these therapies. Magnetorelaxometry (MRX) is capable to provide such quantitative information based on the specific response of the MNPs after switching-off an applied magnetic field. Applying a uniform (homogeneous) magnetic field to a MNP distribution and measuring the MNP response by multiple sensors at different locations allows for spatially resolved MNP quantification. However, to reconstruct the MNP distribution from this spatially resolved MRX data, an ill posed inverse problem has to be solved. So far, the solution of this problem was stabilized incorporating a-priori knowledge in the forward model, e.g. by setting priors on the vertical position of the distribution using a 2D reconstruction grid or setting priors on the number and geometry of the MNP sources inside the body. MRX tomography represents a novel approach for quantitative 3D imaging of MNPs, where the inverse solution is stabilized by a series of MRX measurements. In MRX tomography, only parts of the MNP distribution are sequentially magnetized by the use of inhomogeneous magnetic fields. Each magnetizing is followed by detection of the response of the corresponding part of the distribution by multiple sensors. The 3D reconstruction of the MNP distribution is then accomplished by a common evaluation of the distinct MRX measurement series. In this thesis the first experimental setup for MRX tomography was developed for quantitative 3D imaging of biomedical MNP distributions. It is based on a multi-channel magnetizing unit which has been engineered to

  1. Label-Free Biomedical Imaging Using High-Speed Lock-In Pixel Sensor for Stimulated Raman Scattering.

    Science.gov (United States)

    Mars, Kamel; Lioe, De Xing; Kawahito, Shoji; Yasutomi, Keita; Kagawa, Keiichiro; Yamada, Takahiro; Hashimoto, Mamoru

    2017-11-09

    Raman imaging eliminates the need for staining procedures, providing label-free imaging to study biological samples. Recent developments in stimulated Raman scattering (SRS) have achieved fast acquisition speed and hyperspectral imaging. However, there has been a problem of lack of detectors suitable for MHz modulation rate parallel detection, detecting multiple small SRS signals while eliminating extremely strong offset due to direct laser light. In this paper, we present a complementary metal-oxide semiconductor (CMOS) image sensor using high-speed lock-in pixels for stimulated Raman scattering that is capable of obtaining the difference of Stokes-on and Stokes-off signal at modulation frequency of 20 MHz in the pixel before reading out. The generated small SRS signal is extracted and amplified in a pixel using a high-speed and large area lateral electric field charge modulator (LEFM) employing two-step ion implantation and an in-pixel pair of low-pass filter, a sample and hold circuit and a switched capacitor integrator using a fully differential amplifier. A prototype chip is fabricated using 0.11 μm CMOS image sensor technology process. SRS spectra and images of stearic acid and 3T3-L1 samples are successfully obtained. The outcomes suggest that hyperspectral and multi-focus SRS imaging at video rate is viable after slight modifications to the pixel architecture and the acquisition system.

  2. Label-Free Biomedical Imaging Using High-Speed Lock-In Pixel Sensor for Stimulated Raman Scattering

    Directory of Open Access Journals (Sweden)

    Kamel Mars

    2017-11-01

    Full Text Available Raman imaging eliminates the need for staining procedures, providing label-free imaging to study biological samples. Recent developments in stimulated Raman scattering (SRS have achieved fast acquisition speed and hyperspectral imaging. However, there has been a problem of lack of detectors suitable for MHz modulation rate parallel detection, detecting multiple small SRS signals while eliminating extremely strong offset due to direct laser light. In this paper, we present a complementary metal-oxide semiconductor (CMOS image sensor using high-speed lock-in pixels for stimulated Raman scattering that is capable of obtaining the difference of Stokes-on and Stokes-off signal at modulation frequency of 20 MHz in the pixel before reading out. The generated small SRS signal is extracted and amplified in a pixel using a high-speed and large area lateral electric field charge modulator (LEFM employing two-step ion implantation and an in-pixel pair of low-pass filter, a sample and hold circuit and a switched capacitor integrator using a fully differential amplifier. A prototype chip is fabricated using 0.11 μm CMOS image sensor technology process. SRS spectra and images of stearic acid and 3T3-L1 samples are successfully obtained. The outcomes suggest that hyperspectral and multi-focus SRS imaging at video rate is viable after slight modifications to the pixel architecture and the acquisition system.

  3. PSCID List - PSCDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...t.zip File URL: ftp://ftp.biosciencedbc.jp/archive/pscdb/LATEST/pscdb_pscid_list.zip File size: 24.4 KB Simp...nd-binding sites About This Database Database Description Download License Update History of This Database Site Policy | Contact Us PSCID List - PSCDB | LSDB Archive ...

  4. Experimental Conditions - Metabolonote | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Metabol... and Data Analysis (D) etc. Data file File name: metabolonote_experimental_conditions.zip File URL: ftp://ft...p.biosciencedbc.jp/archive/metabolonote/LATEST/metabolonote_experimental_conditio...ns.zip File size: 15 KB Simple search URL http://togodb.biosciencedbc.jp/togodb/view/metabolonote_experiment...y of This Database Site Policy | Contact Us Experimental Conditions - Metabolonote | LSDB Archive ...

  5. A list of image files of planarians analyzed by in situ hybridication and immunohistochemical staining - Plabrain DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Plabrain DB A list of image files of planarians analyzed by in situ hybridication and immuno...histochemical staining Data detail Data name A list of image files of planarians analyzed by in situ hybridication and immuno...tu hybridication and also protein distribution by immunohistochemical staining in intact planarians or plana...planarians analyzed by In situ hybridication and immunohistochemical staining . D..._image#en Data acquisition method Whole-mount in situ hybridication, immunohistoc

  6. Image files of planarians analyzed by in situ hybridication and immunohistochemical staining - Plabrain DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Plabrain DB Image files of planarians analyzed by in situ hybridication and immunohistochemi...cal staining Data detail Data name Image files of planarians analyzed by in situ hybridication and immunohis...sion patterns by whole-mount in situ hybridication and also protein distribution by immuno...Images are displayed in A list of image files of planarians analyzed by in situ hybridication and immunohist...le search URL - Data acquisition method Whole-mount in situ hybridication, immunohistochemical staining Data

  7. Archiving Legacy Images from International Tsunami Science Team (ITST) Surveys, 1946 - 2013

    Science.gov (United States)

    Synolakis, C.; Kong, L. S. L.; Elwany, H.; Arcos, N. P.; Dunbar, P. K.

    2016-12-01

    The ITIC, USC, Coastal Environments, and NOAA/NCEI have collaborated to gather legacy videos and photos from ITST surveys conducted since 1992, plus from 1946 and 1956, by the USC-TR. The images will become part of the NCEI online and searchable historical tsunami image database. The legacy videos and photos document the local conditions in the tsunami aftermath and are important resources for visualizing the tsunami and identifying patterns of impacts. The data provide invaluable insights into tsunami events, and this information will empower future generations to make informed decisions regarding the future management of ocean resources, local development, and safety protocols. Eyewitnesses are important sources for further understanding even well studied events, especially before 2000. Videos provide context - what residents were doing, what they felt, what they saw, what reactions helped them survive. Photographs document inundation extent. Together, they help to visualize the location and document human behavior and response of the built environment. For example, a flow mark inside a house that survived, versus a partially destroyed house, differentiates construction styles. While the scientific rationale behind tsunami surveys is obvious, ITST protocols strike the delicate balance between the prompt need to act to recover ephemeral scientific field evidence, and urgent priorities for search-and-rescue immediately after tsunami disasters. The data set includes over 50 videos of varying formats and over 3,000 internationally-sourced photos from 24 major tsunami events from 1946-2013: 01 April 1946 Unimak Island, Aleutians; 09 July 1956 Amorgos Island, Greece; 01 September 1992, Nicaragua; 12 December 1992, Flores; 02 June 1994, East Java; 04 October 1994, Shikotan; 14 November 1994, Mindoro, Philippines; 17 January 1994 Northridge; 09 October 1995, Manzanillo, Mexico; 17 February 1997, Biak, Indonesia; 21 February 1996 Chimbote, Peru; 17 August 1998 Aitape, PNG

  8. Hierarchical oriented predictions for resolution scalable lossless and near-lossless compression of CT and MRI biomedical images.

    Science.gov (United States)

    Taquet, Jonathan; Labit, Claude

    2012-05-01

    We propose a new hierarchical approach to resolution scalable lossless and near-lossless (NLS) compression. It combines the adaptability of DPCM schemes with new hierarchical oriented predictors to provide resolution scalability with better compression performances than the usual hierarchical interpolation predictor or the wavelet transform. Because the proposed hierarchical oriented prediction (HOP) is not really efficient on smooth images, we also introduce new predictors, which are dynamically optimized using a least-square criterion. Lossless compression results, which are obtained on a large-scale medical image database, are more than 4% better on CTs and 9% better on MRIs than resolution scalable JPEG-2000 (J2K) and close to nonscalable CALIC. The HOP algorithm is also well suited for NLS compression, providing an interesting rate-distortion tradeoff compared with JPEG-LS and equivalent or a better PSNR than J2K for a high bit rate on noisy (native) medical images.

  9. Detecting long-term changes to vegetation in northern Canada using the Landsat satellite image archive

    International Nuclear Information System (INIS)

    Fraser, R H; Olthof, I; Carrière, M; Deschamps, A; Pouliot, D

    2011-01-01

    Analysis of coarse resolution (∼1 km) satellite imagery has provided evidence of vegetation changes in arctic regions since the mid-1980s that may be attributable to climate warming. Here we investigate finer-scale changes to northern vegetation over the same period using stacks of 30 m resolution Landsat TM and ETM + satellite images. Linear trends in the normalized difference vegetation index (NDVI) and tasseled cap indices are derived for four widely spaced national parks in northern Canada. The trends are related to predicted changes in fractional shrub and other vegetation covers using regression tree classifiers trained with plot measurements and high resolution imagery. We find a consistent pattern of greening (6.1–25.5% of areas increasing) and predicted increases in vascular vegetation in all four parks that is associated with positive temperature trends. Coarse resolution (3 km) NDVI trends were not detected in two of the parks that had less intense greening. A range of independent studies and observations corroborate many of the major changes observed.

  10. Web-Based Software Integration For Dissemination Of Archival Images: The Frontiers Of Science Website

    Directory of Open Access Journals (Sweden)

    Gary Browne

    2011-07-01

    Full Text Available The Frontiers of Science illustrated comic strip of 'science fact' ran from 1961 to 1982, syndicated worldwide through over 600 newspapers. The Rare Books and Special Collections Library at the University of Sydney, in association with Sydney eScholarship, digitized all 939 strips. We aimed to create a website that could disseminate these comic strips to scholars, enthusiasts and the general public. We wanted to enable users to search and browse through the images simply and effectively, with an intuitive and novel viewing platform. Time and resource constraints dictated the use of (mostly open source code modules wherever possible and the integration and customisation of a range of web-based applications, code snippets and technologies (DSpace, eXtensible Text Framework (XTF, OmniFormat, JQuery Tools, Thickbox and Zoomify, stylistically pulled together using CSS. This approach allowed for a rapid development cycle (6 weeks to deliver the site on time as well as provide us with a framework for similar projects.

  11. Download - AT Atlas | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...f it is, access [here]. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - AT Atlas | LSDB Archive ...

  12. Download - RPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data .... If it is, access [here]. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - RPD | LSDB Archive ...

  13. Download - JSNP | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data .... If it is, access [here]. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - JSNP | LSDB Archive ...

  14. Download - Plabrain DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Plabrain...s Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - Plabrain DB | LSDB Archive ...

  15. License - RGP physicalmap | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available nse Update History of This Database Site Policy | Contact Us License - RGP physicalmap | LSDB Archive ... ...switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us RGP physi...calmap License License to Use This Database Last updated : 2015/07/07 You may use t

  16. License - Q-TARO | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...thout notice. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us License - Q-TARO | LSDB Archive ...

  17. Download - eSOL | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...Database Description Download License Update History of This Database Site Policy | Contact Us Download - eSOL | LSDB Archive ...

  18. Download - GenLibi | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...access [here]. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - GenLibi | LSDB Archive ...

  19. License - eSOL | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...iption Download License Update History of This Database Site Policy | Contact Us License - eSOL | LSDB Archive ...

  20. Download - TogoTV | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ... Download License Update History of This Database Site Policy | Contact Us Download - TogoTV | LSDB Archive ...

  1. [Open access :an opportunity for biomedical research].

    Science.gov (United States)

    Duchange, Nathalie; Autard, Delphine; Pinhas, Nicole

    2008-01-01

    Open access within the scientific community depends on the scientific context and the practices of the field. In the biomedical domain, the communication of research results is characterised by the importance of the peer reviewing process, the existence of a hierarchy among journals and the transfer of copyright to the editor. Biomedical publishing has become a lucrative market and the growth of electronic journals has not helped lower the costs. Indeed, it is difficult for today's public institutions to gain access to all the scientific literature. Open access is thus imperative, as demonstrated through the positions taken by a growing number of research funding bodies, the development of open access journals and efforts made in promoting open archives. This article describes the setting up of an Inserm portal for publication in the context of the French national protocol for open-access self-archiving and in an international context.

  2. Multiplex coherent anti-Stokes Raman scattering microspectroscopy of brain tissue with higher ranking data classification for biomedical imaging

    Science.gov (United States)

    Pohling, Christoph; Bocklitz, Thomas; Duarte, Alex S.; Emmanuello, Cinzia; Ishikawa, Mariana S.; Dietzeck, Benjamin; Buckup, Tiago; Uckermann, Ortrud; Schackert, Gabriele; Kirsch, Matthias; Schmitt, Michael; Popp, Jürgen; Motzkus, Marcus

    2017-06-01

    Multiplex coherent anti-Stokes Raman scattering (MCARS) microscopy was carried out to map a solid tumor in mouse brain tissue. The border between normal and tumor tissue was visualized using support vector machines (SVM) as a higher ranking type of data classification. Training data were collected separately in both tissue types, and the image contrast is based on class affiliation of the single spectra. Color coding in the image generated by SVM is then related to pathological information instead of single spectral intensities or spectral differences within the data set. The results show good agreement with the H&E stained reference and spontaneous Raman microscopy, proving the validity of the MCARS approach in combination with SVM.

  3. Biomedical applications of magnetic particles

    CERN Document Server

    Mefford, Thompson

    2017-01-01

    Magnetic particles are increasingly being used in a wide variety of biomedical applications. Written by a team of internationally respected experts, this book provides an up-to-date authoritative reference for scientists and engineers. The first section presents the fundamentals of the field by explaining the theory of magnetism, describing techniques to synthesize magnetic particles, and detailing methods to characterize magnetic particles. The second section describes biomedical applications, including chemical sensors and cellular actuators, and diagnostic applications such as drug delivery, hyperthermia cancer treatment, and magnetic resonance imaging contrast.

  4. Biomedical applications of magnetic particles

    CERN Document Server

    Mefford, Thompson

    2018-01-01

    Magnetic particles are increasingly being used in a wide variety of biomedical applications. Written by a team of internationally respected experts, this book provides an up-to-date authoritative reference for scientists and engineers. The first section presents the fundamentals of the field by explaining the theory of magnetism, describing techniques to synthesize magnetic particles, and detailing methods to characterize magnetic particles. The second section describes biomedical applications, including chemical sensors and cellular actuators, and diagnostic applications such as drug delivery, hyperthermia cancer treatment, and magnetic resonance imaging contrast.

  5. A portable low-cost long-term live-cell imaging platform for biomedical research and education.

    Science.gov (United States)

    Walzik, Maria P; Vollmar, Verena; Lachnit, Theresa; Dietz, Helmut; Haug, Susanne; Bachmann, Holger; Fath, Moritz; Aschenbrenner, Daniel; Abolpour Mofrad, Sepideh; Friedrich, Oliver; Gilbert, Daniel F

    2015-02-15

    Time-resolved visualization and analysis of slow dynamic processes in living cells has revolutionized many aspects of in vitro cellular studies. However, existing technology applied to time-resolved live-cell microscopy is often immobile, costly and requires a high level of skill to use and maintain. These factors limit its utility to field research and educational purposes. The recent availability of rapid prototyping technology makes it possible to quickly and easily engineer purpose-built alternatives to conventional research infrastructure which are low-cost and user-friendly. In this paper we describe the prototype of a fully automated low-cost, portable live-cell imaging system for time-resolved label-free visualization of dynamic processes in living cells. The device is light-weight (3.6 kg), small (22 × 22 × 22 cm) and extremely low-cost (imaging of recombinant HEK293 cells at varying culture conditions and validate its ability to generate time-resolved data of high quality allowing for analysis of time-dependent processes in living cells. While this work focuses on long-term imaging of mammalian cells, the presented technology could also be adapted for use with other biological specimen and provides a general example of rapidly prototyped low-cost biosensor technology for application in life sciences and education. Copyright © 2014 The Authors. Published by Elsevier B.V. All rights reserved.

  6. Advanced computational approaches to biomedical engineering

    CERN Document Server

    Saha, Punam K; Basu, Subhadip

    2014-01-01

    There has been rapid growth in biomedical engineering in recent decades, given advancements in medical imaging and physiological modelling and sensing systems, coupled with immense growth in computational and network technology, analytic approaches, visualization and virtual-reality, man-machine interaction and automation. Biomedical engineering involves applying engineering principles to the medical and biological sciences and it comprises several topics including biomedicine, medical imaging, physiological modelling and sensing, instrumentation, real-time systems, automation and control, sig

  7. Brucellar spondylitis: evaluation by NMR imaging, CT and biomedical radiography - a case report; Espondilite por brucelose - relato de um caso

    Energy Technology Data Exchange (ETDEWEB)

    Campos, Juliana C. de; Marins, Jose Luiz C.; Pereira, Rubens Marcondes [Centro Radiologico, Campinas, SP (Brazil)

    1999-03-01

    A 50-year-old white woman presented with a 4-month history of low pain with lower extremity irradiation. Image studies showed inflammatory changes of the vertebral bodies and invertebral disk at L3-L4 level. Considering she had no previous spinal surgery, negative tests for tuberculosis and a positive history of exposure to brucellosis, further studies were done, and the serologic tests were positive for brucellar antibodies. Follow-up studies within the first two months demonstrated the progressive spinal changes in brucellar spondylitis. (author)

  8. Metabolic Disorders: From Principles to Practice | Aruoma | Archives ...

    African Journals Online (AJOL)

    Archives of Medical and Biomedical Research. Journal Home · ABOUT THIS JOURNAL · Advanced Search · Current Issue · Archives · Journal Home > Vol 1, No 2 (2014) >. Log in or Register to get access to full text downloads. Username, Password, Remember me, or Register. Metabolic Disorders: From Principles to ...

  9. Book Review: Robotic Surgery by G Watanabe | Dawka | Archives of ...

    African Journals Online (AJOL)

    Archives of Medical and Biomedical Research. Journal Home · ABOUT THIS JOURNAL · Advanced Search · Current Issue · Archives · Journal Home > Vol 1, No 3 (2014) >. Log in or Register to get access to full text downloads. Username, Password, Remember me, or Register. Book Review: Robotic Surgery by G ...

  10. Use of graph algorithms in the processing and analysis of images with focus on the biomedical data.

    Science.gov (United States)

    Zdimalova, M; Roznovjak, R; Weismann, P; El Falougy, H; Kubikova, E

    2017-01-01

    Image segmentation is a known problem in the field of image processing. A great number of methods based on different approaches to this issue was created. One of these approaches utilizes the findings of the graph theory. Our work focuses on segmentation using shortest paths in a graph. Specifically, we deal with methods of "Intelligent Scissors," which use Dijkstra's algorithm to find the shortest paths. We created a new software in Microsoft Visual Studio 2013 integrated development environment Visual C++ in the language C++/CLI. We created a format application with a graphical users development environment for system Windows, with using the platform .Net (version 4.5). The program was used for handling and processing the original medical data. The major disadvantage of the method of "Intelligent Scissors" is the computational time length of Dijkstra's algorithm. However, after the implementation of a more efficient priority queue, this problem could be alleviated. The main advantage of this method we see in training that enables to adapt to a particular kind of edge, which we need to segment. The user involvement has a significant influence on the process of segmentation, which enormously aids to achieve high-quality results (Fig. 7, Ref. 13).

  11. Archival Descriptions from the National Archives Catalog

    Data.gov (United States)

    National Archives and Records Administration — Archival Descriptions from the National Archives Catalog data set provides archival descriptions of the permanent holdings of the federal government in the custody...

  12. Design and realisation of integrated circuits for the readout of pixel sensors in high-energy physics and biomedical imaging

    International Nuclear Information System (INIS)

    Peric, I.

    2004-08-01

    Radiation tolerant pixel-readout chip for the ATLAS pixel detector has been designed, implemented in a deep-submicron CMOS technology and successfully tested. The chip contains readout-channels with complex analog and digital circuits. Chip for steering of the DEPFET active-pixel matrix has been implemented in a high-voltage CMOS technology. The chip contains channels which generate fast sequences of high-voltage signals. Detector containing this chip has been successfully tested. Pixel-readout test chip for an X-ray imaging pixel sensor has been designed, implemented in a CMOS technology and tested. Pixel-readout channels are able to simultaneously count the signals generated by passage of individual photons and to sum the total charge generated during exposure time. (orig.)

  13. Statistics in biomedical research

    Directory of Open Access Journals (Sweden)

    González-Manteiga, Wenceslao

    2007-06-01

    Full Text Available The discipline of biostatistics is nowadays a fundamental scientific component of biomedical, public health and health services research. Traditional and emerging areas of application include clinical trials research, observational studies, physiology, imaging, and genomics. The present article reviews the current situation of biostatistics, considering the statistical methods traditionally used in biomedical research, as well as the ongoing development of new methods in response to the new problems arising in medicine. Clearly, the successful application of statistics in biomedical research requires appropriate training of biostatisticians. This training should aim to give due consideration to emerging new areas of statistics, while at the same time retaining full coverage of the fundamentals of statistical theory and methodology. In addition, it is important that students of biostatistics receive formal training in relevant biomedical disciplines, such as epidemiology, clinical trials, molecular biology, genetics, and neuroscience.La Bioestadística es hoy en día una componente científica fundamental de la investigación en Biomedicina, salud pública y servicios de salud. Las áreas tradicionales y emergentes de aplicación incluyen ensayos clínicos, estudios observacionales, fisología, imágenes, y genómica. Este artículo repasa la situación actual de la Bioestadística, considerando los métodos estadísticos usados tradicionalmente en investigación biomédica, así como los recientes desarrollos de nuevos métodos, para dar respuesta a los nuevos problemas que surgen en Medicina. Obviamente, la aplicación fructífera de la estadística en investigación biomédica exige una formación adecuada de los bioestadísticos, formación que debería tener en cuenta las áreas emergentes en estadística, cubriendo al mismo tiempo los fundamentos de la teoría estadística y su metodología. Es importante, además, que los estudiantes de

  14. Archiving Websites

    DEFF Research Database (Denmark)

    Brügger, Niels

    is reached. Firstly, unlike other well-known media, the Internet does not simply exist in a form suited to being archived, but rather is first formed as an object of study in the archiving, and it is formed differently depending on who does the archiving, when, and for what purpose. Secondly, this means......This book treats the micro archiving of websites, i.e. archiving by researchers, students or others without special technical knowledge who, using a standard computer, wish to save a website for further study. The phenomenon is discussed from the standpoint that Internet research must be able...... to stabilise and save the object of its analysis. However, the Internet is endowed with certain fundamental media-specific dynamics that make stabilisation difficult. Based on an account and discussion of these dynamics (linked as they are to sender, text and recipient) the following double conclusion...

  15. Biomedical technology

    CERN Document Server

    Wriggers, Peter

    2015-01-01

    During the last years computational methods lead to new approaches that can be applied within medical practice. Based on the tremendous advances in medical imaging and high-performance computing, virtual testing is able to help in medical decision processes or implant designs. Current challenges in medicine and engineering are related to the application of computational methods to clinical medicine and the study of biological systems at different scales. Additionally manufacturers will be able to use computational tools and methods to predict the performance of their medical devices in virtual patients. The physical and animal testing procedures could be reduced by virtual prototyping of medical devices. Here simulations can enhance the performance of alternate device designs for a range of virtual patients. This will lead to a refinement of designs and to safer products. This book summarizes different aspects of approaches to enhance function, production, initialization and complications of different types o...

  16. Biomedical engineering fundamentals

    CERN Document Server

    Bronzino, Joseph D

    2014-01-01

    Known as the bible of biomedical engineering, The Biomedical Engineering Handbook, Fourth Edition, sets the standard against which all other references of this nature are measured. As such, it has served as a major resource for both skilled professionals and novices to biomedical engineering.Biomedical Engineering Fundamentals, the first volume of the handbook, presents material from respected scientists with diverse backgrounds in physiological systems, biomechanics, biomaterials, bioelectric phenomena, and neuroengineering. More than three dozen specific topics are examined, including cardia

  17. Applications of computational intelligence in biomedical technology

    CERN Document Server

    Majernik, Jaroslav; Pancerz, Krzysztof; Zaitseva, Elena

    2016-01-01

    This book presents latest results and selected applications of Computational Intelligence in Biomedical Technologies. Most of contributions deal with problems of Biomedical and Medical Informatics, ranging from theoretical considerations to practical applications. Various aspects of development methods and algorithms in Biomedical and Medical Informatics as well as Algorithms for medical image processing, modeling methods are discussed. Individual contributions also cover medical decision making support, estimation of risks of treatments, reliability of medical systems, problems of practical clinical applications and many other topics  This book is intended for scientists interested in problems of Biomedical Technologies, for researchers and academic staff, for all dealing with Biomedical and Medical Informatics, as well as PhD students. Useful information is offered also to IT companies, developers of equipment and/or software for medicine and medical professionals.  .

  18. An automated patient recognition method based on an image-matching technique using previous chest radiographs in the picture archiving and communication system environment

    International Nuclear Information System (INIS)

    Morishita, Junji; Katsuragawa, Shigehiko; Kondo, Keisuke; Doi, Kunio

    2001-01-01

    An automated patient recognition method for correcting 'wrong' chest radiographs being stored in a picture archiving and communication system (PACS) environment has been developed. The method is based on an image-matching technique that uses previous chest radiographs. For identification of a 'wrong' patient, the correlation value was determined for a previous image of a patient and a new, current image of the presumed corresponding patient. The current image was shifted horizontally and vertically and rotated, so that we could determine the best match between the two images. The results indicated that the correlation values between the current and previous images for the same, 'correct' patients were generally greater than those for different, 'wrong' patients. Although the two histograms for the same patient and for different patients overlapped at correlation values greater than 0.80, most parts of the histograms were separated. The correlation value was compared with a threshold value that was determined based on an analysis of the histograms of correlation values obtained for the same patient and for different patients. If the current image is considered potentially to belong to a 'wrong' patient, then a warning sign with the probability for a 'wrong' patient is provided to alert radiology personnel. Our results indicate that at least half of the 'wrong' images in our database can be identified correctly with the method described in this study. The overall performance in terms of a receiver operating characteristic curve showed a high performance of the system. The results also indicate that some readings of 'wrong' images for a given patient in the PACS environment can be prevented by use of the method we developed. Therefore an automated warning system for patient recognition would be useful in correcting 'wrong' images being stored in the PACS environment

  19. Web tools for large-scale 3D biological images and atlases

    Directory of Open Access Journals (Sweden)

    Husz Zsolt L

    2012-06-01

    Full Text Available Abstract Background Large-scale volumetric biomedical image data of three or more dimensions are a significant challenge for distributed browsing and visualisation. Many images now exceed 10GB which for most users is too large to handle in terms of computer RAM and network bandwidth. This is aggravated when users need to access tens or hundreds of such images from an archive. Here we solve the problem for 2D section views through archive data delivering compressed tiled images enabling users to browse through very-large volume data in the context of a standard web-browser. The system provides an interactive visualisation for grey-level and colour 3D images including multiple image layers and spatial-data overlay. Results The standard Internet Imaging Protocol (IIP has been extended to enable arbitrary 2D sectioning of 3D data as well a multi-layered images and indexed overlays. The extended protocol is termed IIP3D and we have implemented a matching server to deliver the protocol and a series of Ajax/Javascript client codes that will run in an Internet browser. We have tested the server software on a low-cost linux-based server for image volumes up to 135GB and 64 simultaneous users. The section views are delivered with response times independent of scale and orientation. The exemplar client provided multi-layer image views with user-controlled colour-filtering and overlays. Conclusions Interactive browsing of arbitrary sections through large biomedical-image volumes is made possible by use of an extended internet protocol and efficient server-based image tiling. The tools open the possibility of enabling fast access to large image archives without the requirement of whole image download and client computers with very large memory configurations. The system was demonstrated using a range of medical and biomedical image data extending up to 135GB for a single image volume.

  20. Disease - MicrobeDB.jp | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...File name: disease.tar.gz File URL: ftp://ftp.biosciencedbc.jp/archive/microbedb/...iption Download License Update History of This Database Site Policy | Contact Us Disease - MicrobeDB.jp | LSDB Archive ...

  1. Movie collection - TogoTV | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ols. Data file File name: movie File URL: ftp://ftp.biosciencedbc.jp/archive/togotv/movie/ File size: 200 GB...ata entries 1169 entries - About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Movie collection - TogoTV | LSDB Archive ...

  2. Update History of This Database - SSBD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us SSBD Update History of This Database Date Update contents 2016/07/25 SSBD English archive si...tion Download License Update History of This Database Site Policy | Contact Us Update History of This Database - SSBD | LSDB Archive ...

  3. Update History of This Database - GRIPDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us GRIPDB Update History of This Database Date Update contents 2017/07/19 GRIPDB English archiv...base Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - GRIPDB | LSDB Archive ...

  4. Update History of This Database - MicrobeDB.jp | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us MicrobeDB.jp Update History of This Database Date Update contents 2017/06/29 Archive V2 is r...ion Download License Update History of This Database Site Policy | Contact Us Update History of This Database - MicrobeDB.jp | LSDB Archive ...

  5. Update History of This Database - SAHG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us SAHG Update History of This Database Date Update contents 2016/05/09 SAHG English archive si...Download License Update History of This Database Site Policy | Contact Us Update History of This Database - SAHG | LSDB Archive ...

  6. Update History of This Database - ConfC | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us ConfC Update History of This Database Date Update contents 2016/09/20 ConfC English archive ...tion Download License Update History of This Database Site Policy | Contact Us Update History of This Database - ConfC | LSDB Archive ...

  7. Update History of This Database - TogoTV | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us TogoTV Update History of This Database Date Update contents 2017/05/12 TogoTV English archiv...ription Download License Update History of This Database Site Policy | Contact Us Update History of This Database - TogoTV | LSDB Archive ...

  8. SRA - MicrobeDB.jp | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...e following table). Data file File name: sra.tar.gz File URL: ftp://ftp.biosciencedbc.jp/archive/microbedb/L...t This Database Database Description Download License Update History of This Database Site Policy | Contact Us SRA - MicrobeDB.jp | LSDB Archive ...

  9. cDNA table - RPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ile URL: ftp://ftp.biosciencedbc.jp/archive/rpd/LATEST/rpd_cdna.zip File size: 15 KB Simple search URL http:...age About This Database Database Description Download License Update History of This Database Site Policy | Contact Us cDNA table - RPD | LSDB Archive ...

  10. Cluster - ClEST | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...e File name: clest_cluster.zip File URL: ftp://ftp.biosciencedbc.jp/archive/clest/LATEST/clest_cluster.zip F...ownload License Update History of This Database Site Policy | Contact Us Cluster - ClEST | LSDB Archive ...

  11. Clone - ClEST | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...le URL: ftp://ftp.biosciencedbc.jp/archive/clest/LATEST/clest_clone.zip File size: 660 KB Simple search URL ...ion Download License Update History of This Database Site Policy | Contact Us Clone - ClEST | LSDB Archive ...

  12. BRC - MicrobeDB.jp | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...table). Data file File name: brc.tar.gz File URL: ftp://ftp.biosciencedbc.jp/archive/microbedb/LATEST/brc.ta...rains in JCM. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us BRC - MicrobeDB.jp | LSDB Archive ...

  13. All 5' EST - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...n of data contents 5' EST sequences Data file File name: CSV: kome_est_5end_all.zip File URL: ftp://ftp.biosciencedbc.jp/archiv...fasta.zip File URL: ftp://ftp.biosciencedbc.jp/archive/kome/LATEST/kome_est_5end_...se Description Download License Update History of This Database Site Policy | Contact Us All 5' EST - KOME | LSDB Archive ...

  14. All 3' EST - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...n of data contents 3' EST sequences Data file File name: CSV: kome_est_3end_all.zip File URL: ftp://ftp.biosciencedbc.jp/archiv...fasta.zip File URL: ftp://ftp.biosciencedbc.jp/archive/kome/LATEST/kome_est_3end_...se Description Download License Update History of This Database Site Policy | Contact Us All 3' EST - KOME | LSDB Archive ...

  15. Synchrotron radiation and biomedical imaging

    International Nuclear Information System (INIS)

    Luccio, A.

    1986-08-01

    In this lecture we describe the characteristics of Synchrotron radiation as a source of X rays. We discuss the properties of SR arc sources, wigglers, undulators and the use of backscattering of laser light. Applications to angiography, X ray microscopy and tomography are reviewed. 16 refs., 23 figs

  16. Protocol - RPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us RPD Protocol Data detail Data name Protocol DOI 10.18908/lsdba.nbdc00191-006 Description of data contents Protoc...ols for various methods of proteomics. Data file File name: rpd_protocol_jp.zip (Japanes...e version) File URL: ftp://ftp.biosciencedbc.jp/archive/rpd/LATEST/rpd_protocol_jp.zip File size: 535 KB File name: rpd_protoc...p/archive/rpd/LATEST/rpd_protocol_en.zip File size: 329 KB Simple search URL - Data acquisition method - Dat

  17. Introduction to biomedical engineering technology

    CERN Document Server

    Street, Laurence J

    2011-01-01

    IntroductionHistory of Medical DevicesThe Role of Biomedical Engineering Technologists in Health CareCharacteristics of Human Anatomy and Physiology That Relate to Medical DevicesSummaryQuestionsDiagnostic Devices: Part OnePhysiological Monitoring SystemsThe HeartSummaryQuestionsDiagnostic Devices: Part TwoCirculatory System and BloodRespiratory SystemNervous SystemSummaryQuestionsDiagnostic Devices: Part ThreeDigestive SystemSensory OrgansReproductionSkin, Bone, Muscle, MiscellaneousChapter SummaryQuestionsDiagnostic ImagingIntroductionX-RaysMagnetic Resonance Imaging ScannersPositron Emissio

  18. Accessing biomedical literature in the current information landscape.

    Science.gov (United States)

    Khare, Ritu; Leaman, Robert; Lu, Zhiyong

    2014-01-01

    Biomedical and life sciences literature is unique because of its exponentially increasing volume and interdisciplinary nature. Biomedical literature access is essential for several types of users including biomedical researchers, clinicians, database curators, and bibliometricians. In the past few decades, several online search tools and literature archives, generic as well as biomedicine specific, have been developed. We present this chapter in the light of three consecutive steps of literature access: searching for citations, retrieving full text, and viewing the article. The first section presents the current state of practice of biomedical literature access, including an analysis of the search tools most frequently used by the users, including PubMed, Google Scholar, Web of Science, Scopus, and Embase, and a study on biomedical literature archives such as PubMed Central. The next section describes current research and the state-of-the-art systems motivated by the challenges a user faces during query formulation and interpretation of search results. The research solutions are classified into five key areas related to text and data mining, text similarity search, semantic search, query support, relevance ranking, and clustering results. Finally, the last section describes some predicted future trends for improving biomedical literature access, such as searching and reading articles on portable devices, and adoption of the open access policy.

  19. Medical Archive Recording System (MARS)

    OpenAIRE

    Mohammad Reza Tajvidi

    2007-01-01

    In this talk, one of the most efficient, and reliable integrated tools for CD/DVD production workflow, called Medical Archive Recording System (MARS) by ETIAM Company, France, which is a leader in multimedia connectivity for healthcare in Europe, is going to be introduced. "nThis tool is used to record all patient studies, route the studies to printers and PACS automatically, print key images and associated reports and log all study production for automated post processing/archiving. Its...

  20. Fundamental of biomedical engineering

    CERN Document Server

    Sawhney, GS

    2007-01-01

    About the Book: A well set out textbook explains the fundamentals of biomedical engineering in the areas of biomechanics, biofluid flow, biomaterials, bioinstrumentation and use of computing in biomedical engineering. All these subjects form a basic part of an engineer''s education. The text is admirably suited to meet the needs of the students of mechanical engineering, opting for the elective of Biomedical Engineering. Coverage of bioinstrumentation, biomaterials and computing for biomedical engineers can meet the needs of the students of Electronic & Communication, Electronic & Instrumenta

  1. Biomedical engineering principles

    CERN Document Server

    Ritter, Arthur B; Valdevit, Antonio; Ascione, Alfred N

    2011-01-01

    Introduction: Modeling of Physiological ProcessesCell Physiology and TransportPrinciples and Biomedical Applications of HemodynamicsA Systems Approach to PhysiologyThe Cardiovascular SystemBiomedical Signal ProcessingSignal Acquisition and ProcessingTechniques for Physiological Signal ProcessingExamples of Physiological Signal ProcessingPrinciples of BiomechanicsPractical Applications of BiomechanicsBiomaterialsPrinciples of Biomedical Capstone DesignUnmet Clinical NeedsEntrepreneurship: Reasons why Most Good Designs Never Get to MarketAn Engineering Solution in Search of a Biomedical Problem

  2. 3rd International Conference on Nanotechnologies and Biomedical Engineering

    CERN Document Server

    Tiginyanu, Ion

    2016-01-01

    This volume presents the proceedings of the 3rd International Conference on Nanotechnologies and Biomedical Engineering which was held on September 23-26, 2015 in Chisinau, Republic of Moldova. ICNBME-2015 continues the series of International Conferences in the field of nanotechnologies and biomedical engineering. It aims at bringing together scientists and engineers dealing with fundamental and applied research for reporting on the latest theoretical developments and applications involved in the fields. Topics include Nanotechnologies and nanomaterials Plasmonics and metamaterials Bio-micro/nano technologies Biomaterials Biosensors and sensors systems Biomedical instrumentation Biomedical signal processing Biomedical imaging and image processing Molecular, cellular and tissue engineering Clinical engineering, health technology management and assessment; Health informatics, e-health and telemedicine Biomedical engineering education Nuclear and radiation safety and security Innovations and technology transfer...

  3. Biomedical applications engineering tasks

    Science.gov (United States)

    Laenger, C. J., Sr.

    1976-01-01

    The engineering tasks performed in response to needs articulated by clinicians are described. Initial contacts were made with these clinician-technology requestors by the Southwest Research Institute NASA Biomedical Applications Team. The basic purpose of the program was to effectively transfer aerospace technology into functional hardware to solve real biomedical problems.

  4. Application of infrared to biomedical sciences

    CERN Document Server

    Etehadtavakol, Mahnaz

    2017-01-01

    The book covers the latest updates in the application of infrared to biomedical sciences, a non-invasive, contactless, safe and easy approach imaging of skin and tissue temperatures. Its diagnostic procedure allows practitioners to identify the locations of abnormal chemical and blood vessel activity such as angiogenesis in body tissue. Its non-invasive approach works by applying the technology of the infrared camera and state-of-the-art software, where high-resolution digital infrared imaging technology benefits highly from enhanced image production, standardized image interpretation protocols, computerized comparison and storage, and sophisticated image enhancement and analysis. The book contains contributions from global prominent scientists in the area of infrared applications in biomedical studies. The target audience includes academics, practitioners, clinicians and students working in the area of infrared imaging in biomedicine.

  5. 5th International Conference on Biomedical Engineering in Vietnam

    CERN Document Server

    Phuong, Tran

    2015-01-01

    This volume presents the proceedings of the Fifth International Conference on the Development of Biomedical Engineering in Vietnam which was held from June 16-18, 2014 in Ho Chi Minh City. The volume reflects the progress of Biomedical Engineering and discusses problems and solutions. I aims identifying new challenges, and shaping future directions for research in biomedical engineering fields including medical instrumentation, bioinformatics, biomechanics, medical imaging, drug delivery therapy, regenerative medicine and entrepreneurship in medical devices.

  6. Life Sciences Data Archive (LSDA)

    Science.gov (United States)

    Fitts, M.; Johnson-Throop, Kathy; Thomas, D.; Shackelford, K.

    2008-01-01

    In the early days of spaceflight, space life sciences data were been collected and stored in numerous databases, formats, media-types and geographical locations. While serving the needs of individual research teams, these data were largely unknown/unavailable to the scientific community at large. As a result, the Space Act of 1958 and the Science Data Management Policy mandated that research data collected by the National Aeronautics and Space Administration be made available to the science community at large. The Biomedical Informatics and Health Care Systems Branch of the Space Life Sciences Directorate at JSC and the Data Archive Project at ARC, with funding from the Human Research Program through the Exploration Medical Capability Element, are fulfilling these requirements through the systematic population of the Life Sciences Data Archive. This program constitutes a formal system for the acquisition, archival and distribution of data for Life Sciences-sponsored experiments and investigations. The general goal of the archive is to acquire, preserve, and distribute these data using a variety of media which are accessible and responsive to inquiries from the science communities.

  7. Archive archaeology

    DEFF Research Database (Denmark)

    Mortensen, Eva

    2017-01-01

    With the rediscovery of Jerash in the 19th century as the starting point, this contribution focuses on the use of digital archives. Travel accounts, diaries, photographs, sketches and maps are to a large extent made publicly available online. Wishing to create an overview of the rediscovery of Je...

  8. Magnetic nanoparticles for biomedical applications

    International Nuclear Information System (INIS)

    Krustev, P.; Ruskov, T.

    2007-01-01

    In this paper we describe different biomedical application using magnetic nanoparticles. Over the past decade, a number of biomedical applications have begun to emerge for magnetic nanoparticles of differing sizes, shapes, and compositions. Areas under investigation include targeted drug delivery, ultra-sensitive disease detection, gene therapy, high throughput genetic screening, biochemical sensing, and rapid toxicity cleansing. Magnetic nanoparticles exhibit ferromagnetic or superparamagnetic behavior, magnetizing strongly under an applied field. In the second case (superparamagnetic nanoparticles) there is no permanent magnetism once the field is removed. The superparamagnetic nanoparticles are highly attractive as in vivo probes or in vitro tools to extract information on biochemical systems. The optical properties of magnetic metal nanoparticles are spectacular and, therefore, have promoted a great deal of excitement during the last few decades. Many applications as MRI imaging and hyperthermia rely on the use of iron oxide particles. Moreover magnetic nanoparticles conjugated with antibodies are also applied to hyperthermia and have enabled tumor specific contrast enhancement in MRI. Other promising biomedical applications are connected with tumor cells treated with magnetic nanoparticles with X-ray ionizing radiation, which employs magnetic nanoparticles as a complementary radiate source inside the tumor. (authors)

  9. Handbook of biomedical optics

    CERN Document Server

    Boas, David A

    2011-01-01

    Biomedical optics holds tremendous promise to deliver effective, safe, non- or minimally invasive diagnostics and targeted, customizable therapeutics. Handbook of Biomedical Optics provides an in-depth treatment of the field, including coverage of applications for biomedical research, diagnosis, and therapy. It introduces the theory and fundamentals of each subject, ensuring accessibility to a wide multidisciplinary readership. It also offers a view of the state of the art and discusses advantages and disadvantages of various techniques.Organized into six sections, this handbook: Contains intr

  10. Biomedical applications of polymers

    CERN Document Server

    Gebelein, C G

    1991-01-01

    The biomedical applications of polymers span an extremely wide spectrum of uses, including artificial organs, skin and soft tissue replacements, orthopaedic applications, dental applications, and controlled release of medications. No single, short review can possibly cover all these items in detail, and dozens of books andhundreds of reviews exist on biomedical polymers. Only a few relatively recent examples will be cited here;additional reviews are listed under most of the major topics in this book. We will consider each of the majorclassifications of biomedical polymers to some extent, inclu

  11. Powering biomedical devices

    CERN Document Server

    Romero, Edwar

    2013-01-01

    From exoskeletons to neural implants, biomedical devices are no less than life-changing. Compact and constant power sources are necessary to keep these devices running efficiently. Edwar Romero's Powering Biomedical Devices reviews the background, current technologies, and possible future developments of these power sources, examining not only the types of biomedical power sources available (macro, mini, MEMS, and nano), but also what they power (such as prostheses, insulin pumps, and muscular and neural stimulators), and how they work (covering batteries, biofluids, kinetic and ther

  12. Advances in biomedical engineering and biotechnology during 2013-2014.

    Science.gov (United States)

    Liu, Feng; Wang, Ying; Burkhart, Timothy A; González Penedo, Manuel Francisco; Ma, Shaodong

    2014-01-01

    The 3rd International Conference on Biomedical Engineering and Biotechnology (iCBEB 2014), held in Beijing from the 25th to the 28th of September 2014, is an annual conference that intends to provide an opportunity for researchers and practitioners around the world to present the most recent advances and future challenges in the fields of biomedical engineering, biomaterials, bioinformatics and computational biology, biomedical imaging and signal processing, biomechanical engineering and biotechnology, amongst others. The papers published in this issue are selected from this conference, which witnesses the advances in biomedical engineering and biotechnology during 2013-2014.

  13. Biomedical Engineering Laboratory

    National Research Council Canada - National Science Library

    Bodruzzama, Mohammad

    2003-01-01

    ... and on-line analysis of the biomedical signals. Each Biopac system-based laboratory station consists of real-time data acquisition system, amplifiers for EMG, EKG, EEG, and equipment for the study of Plethysmography, evoked response, cardio...

  14. Biomedical signal analysis

    CERN Document Server

    Rangayyan, Rangaraj M

    2015-01-01

    The book will help assist a reader in the development of techniques for analysis of biomedical signals and computer aided diagnoses with a pedagogical examination of basic and advanced topics accompanied by over 350 figures and illustrations. Wide range of filtering techniques presented to address various applications. 800 mathematical expressions and equations. Practical questions, problems and laboratory exercises. Includes fractals and chaos theory with biomedical applications.

  15. Biomedical signal processing

    CERN Document Server

    Akay, Metin

    1994-01-01

    Sophisticated techniques for signal processing are now available to the biomedical specialist! Written in an easy-to-read, straightforward style, Biomedical Signal Processing presents techniques to eliminate background noise, enhance signal detection, and analyze computer data, making results easy to comprehend and apply. In addition to examining techniques for electrical signal analysis, filtering, and transforms, the author supplies an extensive appendix with several computer programs that demonstrate techniques presented in the text.

  16. Biomedical Visual Computing: Case Studies and Challenges

    KAUST Repository

    Johnson, Christopher

    2012-01-01

    Advances in computational geometric modeling, imaging, and simulation let researchers build and test models of increasing complexity, generating unprecedented amounts of data. As recent research in biomedical applications illustrates, visualization will be critical in making this vast amount of data usable; it\\'s also fundamental to understanding models of complex phenomena. © 2012 IEEE.

  17. Data Analysis in Experimental Biomedical Research

    DEFF Research Database (Denmark)

    Markovich, Dmitriy

    This thesis covers two non-related topics in experimental biomedical research: data analysis in thrombin generation experiments (collaboration with Novo Nordisk A/S), and analysis of images and physiological signals in the context of neurovascular signalling and blood flow regulation in the brain...

  18. Take the stigma out of obesity | Indelicato | Archives of Medical and ...

    African Journals Online (AJOL)

    Archives of Medical and Biomedical Research. Journal Home · ABOUT THIS JOURNAL · Advanced Search · Current Issue · Archives · Journal Home > Vol 3, No 1 (2016) >. Log in or Register to get access to full text downloads. Username, Password, Remember me, or Register. Take the stigma out of obesity. Joseph ...

  19. Online Archives

    Directory of Open Access Journals (Sweden)

    Julian D. Richards

    2004-01-01

    Full Text Available Online archives are of increasing importance in Archaeological Informatics, but like any new genre they prompt a number of questions. What is their relationship to publication? What should go in them? How should they be delivered and indexed? Can they be preserved? Whilst their delivery requires technology, we must also consider how that technology should best be employed in the service of our discipline. This article attempts to address some of these questions but it need not be read from start to finish. The links from this summary provide one fairly linear route through the text but each section is self-contained and can also be accessed directly from the Contents page. The problems posed by effective publication of archaeological fieldwork have exercised the profession for many decades. The issues raised go to the core of discussion of whether preservation by record is a valid concept, and indeed whether archaeological data exist. There are different schools of thought about the relationship between publication and archiving, but hopefully we can accept that data are recorded observations but still agree that they have a re-use value for re-examination and re-interpretation. Since the 1960s archaeology has experienced a publication crisis point. The scenario is familiar. Excavation is destruction; it is an unrepeatable experiment and the archaeologist has a professional obligation to make a full and accessible record of his/her observations. Yet full publication is increasingly expensive and difficult, and excavation monographs are read by few people, and bought by even fewer. In England the development of post-PPG16 fieldwork has exacerbated the problem by creating a mountain of unpublished grey literature and making the work of synthesis even harder; a similar situation exists in other countries. Meanwhile museum archives are also reaching breaking point; most are running out of storage space, few can provide facilities for access, and

  20. Biomedical engineering: A platform for research and innovation in ultrasound

    Science.gov (United States)

    Holland, Christy K.

    2004-05-01

    An undergraduate or graduate degree in biomedical engineering prepares students to solve problems at the interface between engineering and medicine. Biomedical engineering encompasses evolving areas such as advanced medical imaging for diagnosis and treatment of disease, tissue engineering for designing and manufacturing biological implants for damaged or diseased tissues and organs, and bioinformatics for determining which genes play a major role in health and disease. Biomedical engineering academic programs produce graduates with the ability to pursue successful careers in the biomedical device industry or to obtain advanced degrees leading to careers in biomedical engineering research, medicine, law or business. Biomedical engineering majors take courses in biology, anatomy, physics, chemistry, engineering, mathematics and medical product design and value life-long learning. Students learn to work effectively in interdisciplinary teams comprised of individuals with diverse social, cultural and technical backgrounds. Biomedical engineering is becoming increasingly important in imaging and image-guided research. Some examples of innovative ultrasound technology under development are ultrasound devices to accelerate the dissolution of blood clots, advanced surgical instruments with ultrasound guidance and ultrasound contrast agents for targeted drug delivery. Biomedical engineering is a great career choice for technically minded individuals who endeavor to work on applied problems that are medically relevant.

  1. Update History of This Database - DMPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us DMPD Update History of This Database Date Update contents 2010/03/29 DMPD English archive si....jp/macrophage/ ) is released. About This Database Database Description Download License Update History of T...his Database Site Policy | Contact Us Update History of This Database - DMPD | LSDB Archive ...

  2. Update History of This Database - NBDC NikkajiRDF | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us NBDC NikkajiRDF Update History of This Database Date Update contents 2017/02/17 Archive vers...iweb.jst.go.jp/ ) is opened. About This Database Database Description Download License Update History... of This Database Site Policy | Contact Us Update History of This Database - NBDC NikkajiRDF | LSDB Archive ...

  3. Update History of This Database - RMOS | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us RMOS Update History of This Database Date Update contents 2015/10/27 RMOS English archive si...12 RMOS (http://cdna01.dna.affrc.go.jp/RMOS/) is opened. About This Database Database Description Download License Update History... of This Database Site Policy | Contact Us Update History of This Database - RMOS | LSDB Archive ...

  4. Observation of Arabidopsis phenotype - Arabidopsis Phenome Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Arab...idopsis Phenome Database Observation of Arabidopsis phenotype Data detail Data name Observation of Arab...-hunting line. Data file File name: riken_piam_main.zip File URL: ftp://ftp.biosciencedbc.jp/archive/arabid_...Site Policy | Contact Us Observation of Arabidopsis phenotype - Arabidopsis Phenome Database | LSDB Archive ...

  5. Data Analysis (D) - Metabolonote | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Metabol...s, etc. Data file File name: metabolonote_data_analysis.zip File URL: ftp://ftp.biosciencedbc.jp/archive/metabolonote/LATEST/metabol...RL http://togodb.biosciencedbc.jp/togodb/view/metabolonote_data_analysis#en Data acquisition method - Data a... Update History of This Database Site Policy | Contact Us Data Analysis (D) - Metabolonote | LSDB Archive ...

  6. Sample Set (SE) - Metabolonote | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Metabol...ompared with which control, etc. Data file File name: metabolonote_sample_set.zip... File URL: ftp://ftp.biosciencedbc.jp/archive/metabolonote/LATEST/metabolonote_sample_set.zip File size: 41 ...KB Simple search URL http://togodb.biosciencedbc.jp/togodb/view/metabolonote_sample_set#en Data acquisition ...f This Database Site Policy | Contact Us Sample Set (SE) - Metabolonote | LSDB Archive ...

  7. INVESTIGATING THE CORE MORPHOLOGY-SEYFERT CLASS RELATIONSHIP WITH HUBBLE SPACE TELESCOPE ARCHIVAL IMAGES OF LOCAL SEYFERT GALAXIES

    Energy Technology Data Exchange (ETDEWEB)

    Rutkowski, M. J.; Hegel, P. R.; Kim, Hwihyun; Windhorst, R. A. [School of Earth and Space Exploration, Arizona State University, Tempe, AZ 85287-1404 (United States); Tamura, Kazuyuki [Naruto University of Education, Nakashima, Takashima, Naruto-cho, Naruto-shi 772-8502 (Japan)

    2013-07-01

    The unified model of active galactic nuclei (AGNs) has provided a successful explanation for the observed diversity of AGNs in the local universe. However, recent analysis of multi-wavelength spectral and image data suggests that the unified model is only a partial theory of AGNs, and may need to be augmented to remain consistent with all observations. Recent studies using high spatial resolution ground- and space-based observations of local AGNs show that Seyfert class and the ''core'' (r {approx}< 1 kpc) host-galaxy morphology are correlated. Currently, this relationship has only been established qualitatively, by visual inspection of the core morphologies of low-redshift (z < 0.035) Seyfert host galaxies. We re-establish this empirical relationship in Hubble Space Telescope optical imaging by visual inspection of a catalog of 85 local (D < 63 Mpc) Seyfert galaxies. We also attempt to re-establish the core morphology-Seyfert class relationship using an automated, non-parametric technique that combines both existing classification parameter methods (the adapted CAS and G-M {sub 20}) and a new method which implements the Source Extractor software for feature detection in unsharp-mask images. This new method is designed explicitly to detect dust features in the images. We use our automated approach to classify the morphology of the AGN cores and determine that Sy2 galaxies visually appear, on average, to have more dust features than Sy1. With the exception of this ''dustiness'' however, we do not measure a strong correlation between the dust morphology and the Seyfert class of the host galaxy using quantitative techniques. We discuss the implications of these results in the context of the unified model.

  8. Spectral imaging and archival data in analyzing the Madonna of the Rabbit painting by Manet and Titian

    Czech Academy of Sciences Publication Activity Database

    Striová, J.; Ruberto, C.; Barucci, M.; Blažek, Jan; Kunzelman, D.; Dal Fovo, A.; Pampaloni, E.; Fontana, R.

    (2018) ISSN 1433-7851 Institutional support: RVO:67985556 Keywords : spectral mapping * image processing * visible near-infrared multispectral scanner Subject RIV: JC - Computer Hardware ; Software OBOR OECD: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8) Impact factor: 11.994, year: 2016 http://library.utia.cas.cz/separaty/2018/ZOI/blazek-0489046.pdf

  9. Archive & Data Management Activities for ISRO Science Archives

    Science.gov (United States)

    Thakkar, Navita; Moorthi, Manthira; Gopala Krishna, Barla; Prashar, Ajay; Srinivasan, T. P.

    2012-07-01

    ISRO has kept a step ahead by extending remote sensing missions to planetary and astronomical exploration. It has started with Chandrayaan-1 and successfully completed the moon imaging during its life time in the orbit. Now, in future ISRO is planning to launch Chandrayaan-2 (next moon mission), Mars Mission and Astronomical mission ASTROSAT. All these missions are characterized by the need to receive process, archive and disseminate the acquired science data to the user community for analysis and scientific use. All these science missions will last for a few months to a few years but the data received are required to be archived, interoperable and requires a seamless access to the user community for the future. ISRO has laid out definite plans to archive these data sets in specified standards and develop relevant access tools to be able to serve the user community. To achieve this goal, a Data Center is set up at Bangalore called Indian Space Science Data Center (ISSDC). This is the custodian of all the data sets of the current and future science missions of ISRO . Chandrayaan-1 is the first among the planetary missions launched/to be launched by ISRO and we had taken the challenge and developed a system for data archival and dissemination of the payload data received. For Chandrayaan-1 the data collected from all the instruments are processed and is archived in the archive layer in the Planetary Data System (PDS 3.0) standards, through the automated pipeline. But the dataset once stored is of no use unless it is made public, which requires a Web-based dissemination system that can be accessible to all the planetary scientists/data users working in this field. Towards this, a Web- based Browse and Dissemination system has been developed, wherein users can register and search for their area of Interest and view the data archived for TMC & HYSI with relevant Browse chips and Metadata of the data. Users can also order the data and get it on their desktop in the PDS

  10. The development of biomedical engineering as experienced by one biomedical engineer.

    Science.gov (United States)

    Newell, Jonathan C

    2012-12-12

    This personal essay described the development of the field of Biomedical Engineering from its early days, from the perspective of one who lived through that development. It describes the making of a major invention using data that had been rejected by other scientists, the re-discovery of an obscure fact of physiology and its use in developing a major medical instrument, the development of a new medical imaging modality, and the near-death rescue of a research project. The essay concludes with comments about the development and present status of impedance imaging, and recent changes in the evolution of biomedical engineering as a field.

  11. Moderate Resolution Imaging Spectroradiometer (MODIS) - Terra

    Data.gov (United States)

    National Aeronautics and Space Administration — This dataset represents multiple products archived at the multiple archive centers for the MODIS (Moderate Resolution Imaging Spectroradiometer) instrument aboard...

  12. Moderate Resolution Imaging Spectroradiometer (MODIS) - Aqua

    Data.gov (United States)

    National Aeronautics and Space Administration — This dataset represents multiple products archived at the multiple archive centers for the MODIS (Moderate Resolution Imaging Spectroradiometer) instrument aboard...

  13. Download - RGP physicalmap | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available le search and download 1 README README_e.html - 2 YAC contig information rgp_physical...map_yac_contigs.zip (1 KB) Simple search and download 3 YAC clone information rgp_physicalmap_yac_clones....zip (18.7 KB) Simple search and download 4 Insert size of YAC clones rgp_physicalmap_insert_size.zip (3.4 K... it is, access [here]. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - RGP physicalmap | LSDB Archive ... ...switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us RGP physi

  14. Resident Archive Services of the Yohkoh Legacy Data Archive

    Directory of Open Access Journals (Sweden)

    A Takeda

    2009-06-01

    Full Text Available The Yohkoh Legacy Data Archive (YLA is one of the first group of Resident Archives (RAs selected for funding for NASA's Virtual Observatories for the Heliophysics Data program. YLA provides the best corrected data set of solar X-ray images and spectra from the Yohkoh satellite with a user-friendly web interface. As a RA, we take responsibility to keep our products well maintained and easily accessible. In addition, we have launched the 'E-consultant service', an e-mail based support to individual users regarding data handling to bolster access and use from a wide range of communities.

  15. Biomedical engineering for health research and development.

    Science.gov (United States)

    Zhang, X-Y

    2015-01-01

    Biomedical engineering is a new area of research in medicine and biology, providing new concepts and designs for the diagnosis, treatment and prevention of various diseases. There are several types of biomedical engineering, such as tissue, genetic, neural and stem cells, as well as chemical and clinical engineering for health care. Many electronic and magnetic methods and equipments are used for the biomedical engineering such as Computed Tomography (CT) scans, Magnetic Resonance Imaging (MRI) scans, Electroencephalography (EEG), Ultrasound and regenerative medicine and stem cell cultures, preparations of artificial cells and organs, such as pancreas, urinary bladders, liver cells, and fibroblasts cells of foreskin and others. The principle of tissue engineering is described with various types of cells used for tissue engineering purposes. The use of several medical devices and bionics are mentioned with scaffold, cells and tissue cultures and various materials are used for biomedical engineering. The use of biomedical engineering methods is very important for the human health, and research and development of diseases. The bioreactors and preparations of artificial cells or tissues and organs are described here.

  16. Introduction to biomedical optics

    CERN Document Server

    Splinter, Robert

    2006-01-01

    GENERAL BIOMEDICAL OPTICS THEORYIntroduction to the Use of Light for Diagnostic and Therapeutic ModalitiesWhat Is Biomedical Optics?Biomedical Optics TimelineElementary Optical DiscoveriesHistorical Events in Therapeutic and Diagnostic Use of LightLight SourcesCurrent State of the ArtSummaryAdditional ReadingProblemsReview of Optical Principles: Fundamental Electromagnetic Theory and Description of Light SourcesDefinitions in OpticsKirchhoff's Laws of RadiationElectromagnetic Wave TheoryLight SourcesApplications of Various LasersSummaryAdditional ReadingProblemsReview of Optical Principles: Classical OpticsGeometrical OpticsOther Optical PrinciplesQuantum PhysicsGaussian OpticsSummaryAdditional ReadingProblemsReview of Optical Interaction PropertiesAbsorption and ScatteringSummaryAdditional ReadingProblemsLight-Tissue Interaction VariablesLaser VariablesTissue VariablesLight Transportation TheoryLight Propagation under Dominant AbsorptionSummaryNomenclatureAdditional ReadingProblemsLight-Tissue Interaction Th...

  17. Update History of This Database - KEGG MEDICUS | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us KEGG MEDICUS Update History of This Database Date Update contents 2014/05/09 KEGG MEDICUS En...This Database Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - KEGG MEDICUS | LSDB Archive ...

  18. Update History of This Database - RPSD | LSDB Archive [Life Science Database Archive metadata

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    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us RPSD Update History of This Database Date Update contents 2015/10/16 The original website is...Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - RPSD | LSDB Archive ...

  19. Update History of This Database - RED | LSDB Archive [Life Science Database Archive metadata

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    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us RED Update History of This Database Date Update contents 2015/12/21 Rice Expression Database...pened. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - RED | LSDB Archive ...

  20. Update History of This Database - Taxonomy Icon | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Taxonomy Icon Update History of This Database Date Update contents 2013/06/19 Taxonomy Icon ...About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - Taxonomy Icon | LSDB Archive ...

  1. Update History of This Database - Metabolonote | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Metabolonote Update History of This Database Date Update contents 2016/06/22 Metabolonote En... About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - Metabolonote | LSDB Archive ...

  2. Update History of This Database - Dicty_cDB | LSDB Archive [Life Science Database Archive metadata

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    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Dicty_cDB Update History of This Database Date Update contents 2015/01/09 The original websi...ase Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - Dicty_cDB | LSDB Archive ...

  3. Update History of This Database - Q-TARO | LSDB Archive [Life Science Database Archive metadata

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    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Q-TARO Update History of This Database Date Update contents 2014/10/20 The URL of the portal...ption Download License Update History of This Database Site Policy | Contact Us Update History of This Database - Q-TARO | LSDB Archive ...

  4. Update History of This Database - DB-SPIRE | LSDB Archive [Life Science Database Archive metadata

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    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us DB-SPIRE Update History of This Database Date Update contents 2017/02/16 DB-SPIRE English ar...ase Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - DB-SPIRE | LSDB Archive ...

  5. Update History of This Database - JSNP | LSDB Archive [Life Science Database Archive metadata

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    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us JSNP Update History of This Database Date Update contents 2016/12/06 Description of the orig...ption Download License Update History of This Database Site Policy | Contact Us Update History of This Database - JSNP | LSDB Archive ...

  6. Update History of This Database - GenLibi | LSDB Archive [Life Science Database Archive metadata

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    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us GenLibi Update History of This Database Date Update contents 2014/03/25 GenLibi English arch...base Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - GenLibi | LSDB Archive ...

  7. Core - NBDC NikkajiRDF | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...10.18908/lsdba.nbdc01530-02-008.V005 Update History V4 - - V3 - - V2 - - V1 - - Description of data contents...se Description Download License Update History of This Database Site Policy | Contact Us Core - NBDC NikkajiRDF | LSDB Archive ...

  8. Download - RGP estmap2001 | LSDB Archive [Life Science Database Archive metadata

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    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...t is, access [here]. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - RGP estmap2001 | LSDB Archive ...

  9. Taxon (Viridiplantae) - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available of This Database Site Policy | Contact Us Taxon (Viridiplantae) - PGDBj - Ortholog DB | LSDB Archive ... ...List Contact us PGDBj - Ortholog DB Taxon (Viridiplantae) Data detail Data name Taxon (Viridiplantae) DOI 10...switchLanguage; BLAST Search Image Search Home About Archive Update History Data

  10. Download - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

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    Full Text Available e Description Download License Update History of This Database Site Policy | Contact Us Download - PGDBj - Ortholog DB | LSDB Archive ... ...List Contact us PGDBj - Ortholog DB Download First of all, please read the license of this database. Data na...switchLanguage; BLAST Search Image Search Home About Archive Update History Data

  11. Protein (Cyanobacteria) - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available ut This Database Database Description Download License Update History of This Database Site Policy | Contact Us Protein (Cyanobacteria) - PGDBj - Ortholog DB | LSDB Archive ... ...List Contact us PGDBj - Ortholog DB Protein (Cyanobacteria) Data detail Data name Protein (Cyanobacteria) DO...switchLanguage; BLAST Search Image Search Home About Archive Update History Data

  12. Taxon (Cyanobacteria) - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available of This Database Site Policy | Contact Us Taxon (Cyanobacteria) - PGDBj - Ortholog DB | LSDB Archive ... ...List Contact us PGDBj - Ortholog DB Taxon (Cyanobacteria) Data detail Data name Taxon (Cyanobacteria) DOI 10...switchLanguage; BLAST Search Image Search Home About Archive Update History Data

  13. Protein (Viridiplantae) - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available ase Description Download License Update History of This Database Site Policy | Contact Us Protein (Viridiplantae) - PGDBj - Ortholog DB | LSDB Archive ... ...List Contact us PGDBj - Ortholog DB Protein (Viridiplantae) Data detail Data name Protein (Viridiplantae) DO...switchLanguage; BLAST Search Image Search Home About Archive Update History Data

  14. Download - tRNADB-CE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us tRNA...rch and download 1 README README_e.html - 2 tRNA sequence data, annotation data a...f This Database Site Policy | Contact Us Download - tRNADB-CE | LSDB Archive ...

  15. Genes (including RNA editing information) - RMG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us RMG Genes... (including RNA editing information) Data detail Data name Genes (including RNA edi... Site Policy | Contact Us Genes (including RNA editing information) - RMG | LSDB Archive ...

  16. Download - MicrobeDB.jp | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Mi... data descriptions are about the downloadable data in this page. They might not correspond to the contents o...ense Update History of This Database Site Policy | Contact Us Download - MicrobeDB.jp | LSDB Archive ...

  17. Biomedical Applications of Nanodiamonds: An Overview.

    Science.gov (United States)

    Passeri, D; Rinaldi, F; Ingallina, C; Carafa, M; Rossi, M; Terranova, M L; Marianecci, C

    2015-02-01

    Nanodiamonds are a novel class of nanomaterials which have raised much attention for application in biomedical field, as they combine the possibility of being produced on large scale using relatively inexpensive synthetic processes, of being fluorescent as a consequence of the presence of nitrogen vacancies, of having their surfaces functionalized, and of having good biocompatibility. Among other applications, we mainly focus on drug delivery, including cell interaction, targeting, cancer therapy, gene and protein delivery. In addition, nanodiamonds for bone and dental implants and for antibacterial use is discussed. Techniques for detection and imaging of nanodiamonds in biological tissues are also reviewed, including electron microscopy, fluorescence microscopy, Raman mapping, atomic force microscopy, thermal imaging, magnetic resonance imaging, and positron emission tomography, either in vitro, in vivo, or ex vivo. Toxicological aspects related to the use of nanodiamonds are also discussed. Finally, patents, preclinical and clinical trials based on the use of nanodiamonds for biomedical applications are reviewed.

  18. Advances in biomedical engineering

    CERN Document Server

    Brown, J H U

    1976-01-01

    Advances in Biomedical Engineering, Volume 6, is a collection of papers that discusses the role of integrated electronics in medical systems and the usage of biological mathematical models in biological systems. Other papers deal with the health care systems, the problems and methods of approach toward rehabilitation, as well as the future of biomedical engineering. One paper discusses the use of system identification as it applies to biological systems to estimate the values of a number of parameters (for example, resistance, diffusion coefficients) by indirect means. More particularly, the i

  19. Advances in biomedical engineering

    CERN Document Server

    Brown, J H U

    1976-01-01

    Advances in Biomedical Engineering, Volume 5, is a collection of papers that deals with application of the principles and practices of engineering to basic and applied biomedical research, development, and the delivery of health care. The papers also describe breakthroughs in health improvements, as well as basic research that have been accomplished through clinical applications. One paper examines engineering principles and practices that can be applied in developing therapeutic systems by a controlled delivery system in drug dosage. Another paper examines the physiological and materials vari

  20. Biomedical enhancements as justice.

    Science.gov (United States)

    Nam, Jeesoo

    2015-02-01

    Biomedical enhancements, the applications of medical technology to make better those who are neither ill nor deficient, have made great strides in the past few decades. Using Amartya Sen's capability approach as my framework, I argue in this article that far from being simply permissible, we have a prima facie moral obligation to use these new developments for the end goal of promoting social justice. In terms of both range and magnitude, the use of biomedical enhancements will mark a radical advance in how we compensate the most disadvantaged members of society. © 2013 John Wiley & Sons Ltd.

  1. Performing Archives/Archives of Performance

    DEFF Research Database (Denmark)

    Performing Archives/Archives of Performance contributes to the ongoing critical discussions of performance and its disappearance, of the ephemeral and its reproduction, of archives and mediatized recordings of liveness. The many contributions by excellent scholars and artists from a broad range...... of interdisciplinary fields as well as from various locations in research geographies demonstrate that despite the extensive discourse on the relationship between performance and the archive, inquiry into the productive tensions between ephemerality and permanence is by no means outdated or exhausted. New ways...... as discussions of specific art works, performances, and archives...

  2. Update History of This Database - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us PGDBj - Ortholog DB Update History of This Database Date Update contents 2017/03/07 PGDBj Orth...L of the Whole data download The URL of The original website information 2014/05/12 PGDBj Ortholog DB (Relea...se57 ver.) English archive site is opened. (Archive V1) 2012/08/01 PGDBj Ortholog DB ( http://pgdbj.jp/ortho...e Update History of This Database Site Policy | Contact Us Update History of This Database - PGDBj - Ortholog DB | LSDB Archive ... ...switchLanguage; BLAST Search Image Search Home About Archive Update History Data

  3. An exploration of the biomedical optics course construction of undergraduate biomedical engineering program in medical colleges

    Science.gov (United States)

    Guo, Shijun; Lyu, Jie; Zhang, Peiming

    2017-08-01

    In this paper, the teaching goals, teaching contents and teaching methods in biomedical optics course construction are discussed. From the dimension of teaching goals, students should master the principle of optical inspection on the human body, diagnosis and treatment of methodology and instruments, through the study of the theory and practice of this course, and can utilize biomedical optics methods to solve practical problems in the clinical medical engineering practice. From the dimension of teaching contents, based on the characteristics of biomedical engineering in medical colleges, the organic integration of engineering aspects, medical optical instruments, and biomedical aspects dispersed in human anatomy, human physiology, clinical medicine fundamental related to the biomedical optics is build. Noninvasive measurement of the human body composition and noninvasive optical imaging of the human body were taken as actual problems in biomedical optics fields. Typical medical applications such as eye optics and laser medicine were also integrated into the theory and practice teaching. From the dimension of teaching methods, referencing to organ-system based medical teaching mode, optical principle and instrument principle were taught by teachers from school of medical instruments, and the histological characteristics and clinical actual need in areas such as digestive diseases and urinary surgery were taught by teachers from school of basic medicine or clinical medicine of medical colleges. Furthermore, clinical application guidance would be provided by physician and surgeons in hospitals.

  4. Archives and the computer

    CERN Document Server

    Cook, Michael Garnet

    1986-01-01

    Archives and the Computer deals with the use of the computer and its systems and programs in archiving data and other related materials. The book covers topics such as the scope of automated systems in archives; systems for records management, archival description, and retrieval; and machine-readable archives. The selection also features examples of archives from different institutions such as the University of Liverpool, Berkshire County Record Office, and the National Maritime Museum.The text is recommended for archivists who would like to know more about the use of computers in archiving of

  5. Archives and the computer

    CERN Document Server

    Cook, Michael Garnet

    1980-01-01

    Archives and the Computer deals with the use of the computer and its systems and programs in archiving data and other related materials. The book covers topics such as the scope of automated systems in archives; systems for records management, archival description, and retrieval; and machine-readable archives. The book also features examples of systems for records management from different institutions such as theTyne and Wear Archive Department, Dyfed Record Office, and the University of Liverpool. Included in the last part are appendices. Appendix A is a directory of archival systems, Appen

  6. Results of the 2016 International Skin Imaging Collaboration International Symposium on Biomedical Imaging challenge: Comparison of the accuracy of computer algorithms to dermatologists for the diagnosis of melanoma from dermoscopic images.

    Science.gov (United States)

    Marchetti, Michael A; Codella, Noel C F; Dusza, Stephen W; Gutman, David A; Helba, Brian; Kalloo, Aadi; Mishra, Nabin; Carrera, Cristina; Celebi, M Emre; DeFazio, Jennifer L; Jaimes, Natalia; Marghoob, Ashfaq A; Quigley, Elizabeth; Scope, Alon; Yélamos, Oriol; Halpern, Allan C

    2018-02-01

    Computer vision may aid in melanoma detection. We sought to compare melanoma diagnostic accuracy of computer algorithms to dermatologists using dermoscopic images. We conducted a cross-sectional study using 100 randomly selected dermoscopic images (50 melanomas, 44 nevi, and 6 lentigines) from an international computer vision melanoma challenge dataset (n = 379), along with individual algorithm results from 25 teams. We used 5 methods (nonlearned and machine learning) to combine individual automated predictions into "fusion" algorithms. In a companion study, 8 dermatologists classified the lesions in the 100 images as either benign or malignant. The average sensitivity and specificity of dermatologists in classification was 82% and 59%. At 82% sensitivity, dermatologist specificity was similar to the top challenge algorithm (59% vs. 62%, P = .68) but lower than the best-performing fusion algorithm (59% vs. 76%, P = .02). Receiver operating characteristic area of the top fusion algorithm was greater than the mean receiver operating characteristic area of dermatologists (0.86 vs. 0.71, P = .001). The dataset lacked the full spectrum of skin lesions encountered in clinical practice, particularly banal lesions. Readers and algorithms were not provided clinical data (eg, age or lesion history/symptoms). Results obtained using our study design cannot be extrapolated to clinical practice. Deep learning computer vision systems classified melanoma dermoscopy images with accuracy that exceeded some but not all dermatologists. Copyright © 2017 American Academy of Dermatology, Inc. Published by Elsevier Inc. All rights reserved.

  7. Biomedical Engineering in Modern Society

    Science.gov (United States)

    Attinger, E. O.

    1971-01-01

    Considers definition of biomedical engineering (BME) and how biomedical engineers should be trained. State of the art descriptions of BME and BME education are followed by a brief look at the future of BME. (TS)

  8. Biomedical Data Mining

    NARCIS (Netherlands)

    Peek, N.; Combi, C.; Tucker, A.

    2009-01-01

    Objective: To introduce the special topic of Methods of Information in Medicine on data mining in biomedicine, with selected papers from two workshops on Intelligent Data Analysis in bioMedicine (IDAMAP) held in Verona (2006) and Amsterdam (2007). Methods: Defining the field of biomedical data

  9. Biomedical research applications

    International Nuclear Information System (INIS)

    Anon.

    1982-01-01

    The biomedical research Panel believes that the Calutron facility at Oak Ridge is a national and international resource of immense scientific value and of fundamental importance to continued biomedical research. This resource is essential to the development of new isotope uses in biology and medicine. It should therefore be nurtured by adequate support and operated in a way that optimizes its services to the scientific and technological community. The Panel sees a continuing need for a reliable supply of a wide variety of enriched stable isotopes. The past and present utilization of stable isotopes in biomedical research is documented in Appendix 7. Future requirements for stable isotopes are impossible to document, however, because of the unpredictability of research itself. Nonetheless we expect the demand for isotopes to increase in parallel with the continuing expansion of biomedical research as a whole. There are a number of promising research projects at the present time, and these are expected to lead to an increase in production requirements. The Panel also believes that a high degree of priority should be given to replacing the supplies of the 65 isotopes (out of the 224 previously available enriched isotopes) no longer available from ORNL

  10. Vendor neutral archive in PACS.

    Science.gov (United States)

    Agarwal, Tapesh Kumar; Sanjeev

    2012-10-01

    An archive is a location containing a collection of records, documents, or other materials of historical importance. An integral part of Picture Archiving and Communication System (PACS) is archiving. When a hospital needs to migrate a PACS vendor, the complete earlier data need to be migrated in the format of the newly procured PACS. It is both time and money consuming. To address this issue, the new concept of vendor neutral archive (VNA) has emerged. A VNA simply decouples the PACS and workstations at the archival layer. This is achieved by developing an application engine that receives, integrates, and transmits the data using the different syntax of a Digital Imaging and Communication in Medicine (DICOM) format. Transferring the data belonging to the old PACS to a new one is performed by a process called migration of data. In VNA, a number of different data migration techniques are available to facilitate transfer from the old PACS to the new one, the choice depending on the speed of migration and the importance of data. The techniques include simple DICOM migration, prefetch-based DICOM migration, medium migration, and the expensive non-DICOM migration. "Vendor neutral" may not be a suitable term, and "architecture neutral," "PACS neutral," "content neutral," or "third-party neutral" are probably better and preferred terms. Notwithstanding this, the VNA acronym has come to stay in both the medical IT user terminology and in vendor nomenclature, and radiologists need to be aware of its impact in PACS across the globe.

  11. Vendor neutral archive in PACS

    Directory of Open Access Journals (Sweden)

    Tapesh Kumar Agarwal

    2012-01-01

    Full Text Available An archive is a location containing a collection of records, documents, or other materials of historical importance. An integral part of Picture Archiving and Communication System (PACS is archiving. When a hospital needs to migrate a PACS vendor, the complete earlier data need to be migrated in the format of the newly procured PACS. It is both time and money consuming. To address this issue, the new concept of vendor neutral archive (VNA has emerged. A VNA simply decouples the PACS and workstations at the archival layer. This is achieved by developing an application engine that receives, integrates, and transmits the data using the different syntax of a Digital Imaging and Communication in Medicine (DICOM format. Transferring the data belonging to the old PACS to a new one is performed by a process called migration of data. In VNA, a number of different data migration techniques are available to facilitate transfer from the old PACS to the new one, the choice depending on the speed of migration and the importance of data. The techniques include simple DICOM migration, prefetch-based DICOM migration, medium migration, and the expensive non-DICOM migration. "Vendor neutral" may not be a suitable term, and "architecture neutral," "PACS neutral," "content neutral," or "third-party neutral" are probably better and preferred terms. Notwithstanding this, the VNA acronym has come to stay in both the medical IT user terminology and in vendor nomenclature, and radiologists need to be aware of its impact in PACS across the globe.

  12. Camera systems in human motion analysis for biomedical applications

    Science.gov (United States)

    Chin, Lim Chee; Basah, Shafriza Nisha; Yaacob, Sazali; Juan, Yeap Ewe; Kadir, Aida Khairunnisaa Ab.

    2015-05-01

    Human Motion Analysis (HMA) system has been one of the major interests among researchers in the field of computer vision, artificial intelligence and biomedical engineering and sciences. This is due to its wide and promising biomedical applications, namely, bio-instrumentation for human computer interfacing and surveillance system for monitoring human behaviour as well as analysis of biomedical signal and image processing for diagnosis and rehabilitation applications. This paper provides an extensive review of the camera system of HMA, its taxonomy, including camera types, camera calibration and camera configuration. The review focused on evaluating the camera system consideration of the HMA system specifically for biomedical applications. This review is important as it provides guidelines and recommendation for researchers and practitioners in selecting a camera system of the HMA system for biomedical applications.

  13. Archives of Medical and Biomedical Research: Editorial Policies

    African Journals Online (AJOL)

    An international committee of reviewers reviews the manuscripts with maintenance of full anonymity. The editors of the journal identify the reviewers based on the nature of article. The editor appoints ... Majid Moridani, PhD. USA. Debasis Bagchi, PhD. USA. Teresa Pounds, Pharm D BCNSP USA. Ramesh K Marya, MD PhD

  14. Archives of Medical and Biomedical Research: Advanced Search

    African Journals Online (AJOL)

    Search tips: Search terms are case-insensitive; Common words are ignored; By default only articles containing all terms in the query are returned (i.e., AND is implied); Combine multiple words with OR to find articles containing either term; e.g., education OR research; Use parentheses to create more complex queries; e.g., ...

  15. Biomedical Science Technologists in Lagos Universities: Meeting ...

    African Journals Online (AJOL)

    Biomedical Science Technologists in Lagos Universities: Meeting Modern Standards in Biomedical Research. ... biomedical techniques. SOTA biomedical science needs adequate financial investment for the scientific resources as well as stable civic infrastructure, thus these public institutions need more of such provisions.

  16. The New Albany Shale Petroleum System, Illinois Basin - Data and Map Image Archive from the Material-Balance Assessment

    Science.gov (United States)

    Higley, Debra K.; Henry, M.E.; Lewan, M.D.; Pitman, Janet K.

    2003-01-01

    The data files and explanations presented in this report were used to generate published material-balance approach estimates of amounts of petroleum 1) expelled from a source rock, and the sum of 2) petroleum discovered in-place plus that lost due to 3) secondary migration within, or leakage or erosion from a petroleum system. This study includes assessment of cumulative production, known petroleum volume, and original oil in place for hydrocarbons that were generated from the New Albany Shale source rocks.More than 4.00 billion barrels of oil (BBO) have been produced from Pennsylvanian-, Mississippian-, Devonian-, and Silurian-age reservoirs in the New Albany Shale petroleum system. Known petroleum volume is 4.16 BBO; the average recovery factor is 103.9% of the current cumulative production. Known petroleum volume of oil is 36.22% of the total original oil in place of 11.45 BBO. More than 140.4 BBO have been generated from the Upper Devonian and Lower Mississippian New Albany Shale in the Illinois Basin. Approximately 86.29 billion barrels of oil that was trapped south of the Cottage Grove fault system were lost by erosion of reservoir intervals. The remaining 54.15 BBO are 21% of the hydrocarbons that were generated in the basin and are accounted for using production data. Included in this publication are 2D maps that show the distribution of production for different formations versus the Rock-Eval pyrolysis hydrogen-indices (HI) contours, and 3D images that show the close association between burial depth and HI values.The primary vertical migration pathway of oil and gas was through faults and fractures into overlying reservoir strata. About 66% of the produced oil is located within the generative basin, which is outlined by an HI contour of 400. The remaining production is concentrated within 30 miles (50 km) outside the 400 HI contour. The generative basin is subdivided by contours of progressively lower hydrogen indices that represent increased levels of

  17. National Archives Catalog and API

    Data.gov (United States)

    National Archives and Records Administration — The National Archives Catalog is the online catalog of NARA's nationwide holdings in the Washington, DC area, Regional Archives, and Presidential Libraries.

  18. Europium enabled luminescent nanoparticles for biomedical applications

    International Nuclear Information System (INIS)

    Syamchand, S.S.; Sony, G.

    2015-01-01

    Lanthanide based nanoparticles are receiving great attention ought to their excellent luminescent and magnetic properties and find challenging biomedical applications. Among the luminescent lanthanide NPs, europium based NPs (Eu-NPs) are better candidates for immunoassay and imaging applications. The Eu-NPs have an edge over quantum dots (QDs) by means of their stable luminescence, long fluorescence lifetime, sharp emission peaks with narrow band width, lack of blinking and biocompatibility. This review surveys the synthesis and properties of a variety of Eu-NPs consolidated from different research articles, for their applications in medicine and biology. The exquisite luminescent properties of Eu-NPs are explored for developing biomedical applications such as immunoassay and bioimaging including multimodal imaging. The biomedical applications of Eu-NPs are mostly diagnostic in nature and mainly focus on various key analytes present in biological systems. The luminescent properties of europium enabled NPs are influenced by a number of factors such as the site symmetry, the metal nanoparticles, metal ions, quantum dots, surfactants, morphology of Eu-NPs, crystal defect, phenomena like antenna effect and physical parameters like temperature. Through this review we explore and assimilate all the factors which affect the luminescence in Eu-NPs and coil a new thread of parameters that control the luminescence in Eu-NPs, which would provide further insight in developing Eu-based nanoprobes for future biomedical prospects. - Highlights: • The review describes 14 major factors that influence the luminescence properties of europium enabled luminescent nanoparticles (Eu-NPs). • Surveys different types of europium containing nanoparticles that have been reported for their biomedical applications. • Eu-NPs are conveniently divided into four different categories, based on the type of the substrates involved. The four categories are (1) virgin Eu-substrate based NPs; (2

  19. Parametric biomedical imaging - what defines the quality of quantitative radiological approaches?; Parametrische biomedizinische Bildgebung - was macht die Qualitaet quantitativer radiologischer Verfahren aus?

    Energy Technology Data Exchange (ETDEWEB)

    Glueer, C.C.; Barkmann, R.; Bolte, H.; Heller, M. [Medizinische Physik, Klinik fuer Diagnostische Radiologie, Universitaetsklinikum Schleswig-Holstein, Kiel (Germany); Hahn, H.K.; Dicken, V. [MeVis, Bremen (Germany); Majumdar, S. [Dept. of Radiology, Univ. of California, San Francisco (United States); Eckstein, F. [Inst. of Anatomy and Musculoskeletal Research, Paracelsus Pvt. Medical Univ., Salzburg (Austria); Nickelsen, T.N. [Lilly Deutschland GmbH, Bad Homburg (Germany)

    2006-12-15

    Quantitative parametric imaging approaches provide new perspectives for radiological imaging. These include quantitative 2D, 3D, and 4D visualization options along with the parametric depiction of biological tissue properties and tissue function. This allows the interpretation of radiological data from a biochemical, biomechanical, or physiological perspective. Quantification permits the detection of small changes that are not yet visually apparent, thus allowing application in early disease diagnosis and monitoring therapy with enhanced sensitivity. This review outlines the potential of quantitative parametric imaging methods and demonstrates this on the basis of a few exemplary applications. One field of particular interest, the use of these methods for investigational new drug application studies, is presented. Assessment criteria for judging the quality of quantitative imaging approaches are discussed in the context of the potential and the limitations of these methods. While quantitative parametric imaging methods do not replace but rather supplement established visual interpretation methods in radiology, they do open up new perspectives for diagnosis and prognosis and in particular for monitoring disease progression and therapy. (orig.)

  20. Download - fRNAdb | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us fRNA... and download 1 README README_e.html - 2 fRNAdb Summary frnadb_summary.zip (46.5 ...B) - 5 Mapping Information Mapping_Information (120 MB) - 6 RNA secondary structure image RNA_secondary_stru...Download License Update History of This Database Site Policy | Contact Us Download - fRNAdb | LSDB Archive ...