WorldWideScience

Sample records for biology characterization origin

  1. Purification, characterization and biological activity of tulipin, a novel inhibitor of DNA synthesis of plant origin.

    Science.gov (United States)

    Gasperi-Campani, A; Lorenzoni, E; Abbondanza, A; Perocco, P; Falasca, A I

    1987-01-01

    A DNA synthesis-inhibiting protein (for which the term tulipin is proposed) was isolated from the bulbs of Tulipa sp. The yield ranged from 3.4 to 4.1 per cent of total protein content of the crude extract. Mr, isoelectric point, neutral and amino sugar and amino acid composition were determined. Inhibition of DNA synthesis varied in intact cells according to the cellular types studied, with a minimum ID 50% (concentration giving 50% inhibition) of 400 ng/ml in neuroblastoma cells. The effect was reversible. No effect was obtained in cell-lysate. RNA and protein synthesis were unaffected. The acute toxicity, evaluated in Swiss mice, gave an LD of 6.1 mg/kg body wt. Results of electron microscopy are also given. A second protein, called tulipin 2, has been isolated and partially characterized. PMID:3592627

  2. Molecular biology characterization, origin and spread of human and animal fascioliasis in the Americas

    International Nuclear Information System (INIS)

    Full text: In Latin America, our collaboration studies have proved that numerous countries present great public health problems caused by Fasciola hepatica. Fascioliasis is a zoonotic disease of domestic ruminants caused by liver fluke parasites and transmitted by freshwater lymnaeid snail vectors. This disease is of well-known veterinary importance because of its great pathogenicity and impact in livestock, especially sheep, goats and cattle, but also pigs, buffaloes and donkeys, as well as horses, camelids and other domestic herbivores. Moreover, this disease is today emerging in humans in Europe, Africa, Asia and the Americas, with 51 countries presenting human infection. A large hot spot of the disease has been detected in altitude areas of Andean countries as Argentina, Chile, Bolivia, Peru, Ecuador and Venezuela, with very high prevalence in livestock and humans in endemic areas where transmission and epidemiology follow whether altiplanic-permanent or valley-seasonal patterns related to vectors of the Galba/Fossaria group. Another hot spot includes Caribbean islands as Cuba and Central American countries as Mexico in which transmission and epidemiology are marked by lymnaeids as Lymnaea cubensis and Pseudosuccinea columella, and where animals present very high prevalence and intensities and a hypoendemic situation with periodic epidemics in humans. Molecular studies were performed during several years to ascertain the origin and spread of fascioliasis in the New World. Specific objectives were the genetic characterisations of both liver flukes and lymnaeid vectors by combined haplotyping. Molecular markers obtained were the complete sequences of the nuclear ribosomal DNA (rDNA) internal transcribed spacers ITS-1 and ITS-2 and the mitochondrial DNA (mtDNA) genes of the cytochrome c oxidase subunit I (cox1) and NADH dehydrogenase subunit I (nad1) and respective aminoacid sequences of the proteins COX1 and NAD1. Respective sequence lengths proved to be of 432

  3. Biological aerosol background characterization

    Science.gov (United States)

    Blatny, Janet; Fountain, Augustus W., III

    2011-05-01

    To provide useful information during military operations, or as part of other security situations, a biological aerosol detector has to respond within seconds or minutes to an attack by virulent biological agents, and with low false alarms. Within this time frame, measuring virulence of a known microorganism is extremely difficult, especially if the microorganism is of unknown antigenic or nucleic acid properties. Measuring "live" characteristics of an organism directly is not generally an option, yet only viable organisms are potentially infectious. Fluorescence based instruments have been designed to optically determine if aerosol particles have viability characteristics. Still, such commercially available biological aerosol detection equipment needs to be improved for their use in military and civil applications. Air has an endogenous population of microorganisms that may interfere with alarm software technologies. To design robust algorithms, a comprehensive knowledge of the airborne biological background content is essential. For this reason, there is a need to study ambient live bacterial populations in as many locations as possible. Doing so will permit collection of data to define diverse biological characteristics that in turn can be used to fine tune alarm algorithms. To avoid false alarms, improving software technologies for biological detectors is a crucial feature requiring considerations of various parameters that can be applied to suppress alarm triggers. This NATO Task Group will aim for developing reference methods for monitoring biological aerosol characteristics to improve alarm algorithms for biological detection. Additionally, they will focus on developing reference standard methodology for monitoring biological aerosol characteristics to reduce false alarm rates.

  4. Evolutionary cell biology: two origins, one objective.

    Science.gov (United States)

    Lynch, Michael; Field, Mark C; Goodson, Holly V; Malik, Harmit S; Pereira-Leal, José B; Roos, David S; Turkewitz, Aaron P; Sazer, Shelley

    2014-12-01

    All aspects of biological diversification ultimately trace to evolutionary modifications at the cellular level. This central role of cells frames the basic questions as to how cells work and how cells come to be the way they are. Although these two lines of inquiry lie respectively within the traditional provenance of cell biology and evolutionary biology, a comprehensive synthesis of evolutionary and cell-biological thinking is lacking. We define evolutionary cell biology as the fusion of these two eponymous fields with the theoretical and quantitative branches of biochemistry, biophysics, and population genetics. The key goals are to develop a mechanistic understanding of general evolutionary processes, while specifically infusing cell biology with an evolutionary perspective. The full development of this interdisciplinary field has the potential to solve numerous problems in diverse areas of biology, including the degree to which selection, effectively neutral processes, historical contingencies, and/or constraints at the chemical and biophysical levels dictate patterns of variation for intracellular features. These problems can now be examined at both the within- and among-species levels, with single-cell methodologies even allowing quantification of variation within genotypes. Some results from this emerging field have already had a substantial impact on cell biology, and future findings will significantly influence applications in agriculture, medicine, environmental science, and synthetic biology. PMID:25404324

  5. The Biological Origin of Linguistic Diversity

    CERN Document Server

    Baronchelli, Andrea; Pastor-Satorras, Romualdo; Christiansen, Morten H; 10.1371/journal.pone.0048029

    2013-01-01

    In contrast with animal communication systems, diversity is characteristic of almost every aspect of human language. Languages variously employ tones, clicks, or manual signs to signal differences in meaning; some languages lack the noun-verb distinction (e.g., Straits Salish), whereas others have a proliferation of fine-grained syntactic categories (e.g., Tzeltal); and some languages do without morphology (e.g., Mandarin), while others pack a whole sentence into a single word (e.g., Cayuga). A challenge for evolutionary biology is to reconcile the diversity of languages with the high degree of biological uniformity of their speakers. Here, we model processes of language change and geographical dispersion and find a consistent pressure for flexible learning, irrespective of the language being spoken. This pressure arises because flexible learners can best cope with the observed high rates of linguistic change associated with divergent cultural evolution following human migration. Thus, rather than genetic ada...

  6. The quest for the origins in evolutionary biology

    OpenAIRE

    Maurel Marie-Christine; Grandcolas Philippe

    2015-01-01

    Studying origins in evolutionary biology is an endeavour to reconstruct a chronicle of past events. Traditionally rooted in comparative biology and phylogenetics, these studies can also be conducted with either logical or experimental modelling approaches. The interaction between these two domains of inference – comparative reconstruction of the evolutionary past and modeling/experimenting the evolutionary process – must be encouraged. In both domains, the study of origins needs to be careful...

  7. Adaptations: Using Darwin's Origin to teach biology and writing.

    Science.gov (United States)

    Morris, James R; Costa, James T; Berry, Andrew

    2015-10-01

    Charles Darwin's On the Origin of Species is at once familiar and unfamiliar. Everyone knows that the Origin introduced the world to the idea of evolution by natural selection, but few of us have actually read it. We suggest that it is worth taking the time not only to read what Darwin had to say, but also to use the Origin to teach both biology and writing. It provides scientific lessons in areas beyond evolutionary biology, such as ecology and biogeography. In addition, it provides valuable rhetorical lessons-how to construct an argument, write persuasively, make use of evidence, know your audience, and anticipate counterarguments. We have been using the Origin in various classes for several years, introducing new generations to Darwin, in his own words. PMID:26315858

  8. The quest for the origins in evolutionary biology

    Directory of Open Access Journals (Sweden)

    Maurel Marie-Christine

    2015-01-01

    Full Text Available Studying origins in evolutionary biology is an endeavour to reconstruct a chronicle of past events. Traditionally rooted in comparative biology and phylogenetics, these studies can also be conducted with either logical or experimental modelling approaches. The interaction between these two domains of inference – comparative reconstruction of the evolutionary past and modeling/experimenting the evolutionary process – must be encouraged. In both domains, the study of origins needs to be carefully designed to take into account anterior evolutionary stages on which they could depend. Comparative biology and past reconstruction must be performed on simple observational data (natural kinds, not on artificial general classes. And finally, understanding causality relationships calls for correlation approaches that must be optimized with regard to the number of natural replicates.

  9. Characterization and remote sensing of biological particles using circular polarization

    CERN Document Server

    Nagdimunov, Lev; Mackowski, Daniel

    2014-01-01

    Biological molecules are characterized by an intrinsic asymmetry known as homochirality. The result is optical activity of biological materials and circular polarization in the light scattered by microorganisms, cells of living organisms, as well as molecules (e.g. amino acids) of biological origin. Lab measurements (Sparks et al. 2009a, b) have found that light scattered by certain biological systems, in particular photosynthetic organisms, is not only circular polarized but contains a characteristic spectral trend, showing a fast change and reversal of sign for circular polarization within absorption bands. Similar behavior can be expected for other biological and prebiological organics, especially amino acids. We begin our study by reproducing the laboratory measurements for photosynthetic organisms through modeling the biological material as aggregated structures and using the Multiple Sphere T-matrix (MSTM) code for light scattering calculations. We further study how the spectral effect described above d...

  10. Microsystems for biological cell characterization

    OpenAIRE

    Rissanen, Anna

    2012-01-01

    This thesis describes three techniques for the characterization of living cells using micro-electro-mechanical systems (MEMS) based devices. The study of cellular function and structure is essential for bioprocess control, disease diagnosis, patient treatment and drug discovery. Microsystem technology enables characterization of very small samples, minimal use of expensive reagents, testing of multiple samples in parallel, and point-of-care testing, all of which increase throughput and reduce...

  11. Search for collective excitations in nanoparticles of biological origin

    International Nuclear Information System (INIS)

    Complete text of publication follows. Nanoparticles of biological origin are abundant in nature. One might even consider searching for them in extraterrestrial objects as a remnant of life, and a fingerprint of the existence of primitive life forms billions of years ago. It is also intriguing to consider the potentiality that some of the bacteria use very scarcely available elements for the internal (detoxication) and external (dissimilatory reduction) production of nanocrystals, for example like Te(0). Developing a breathing process based on a rare earth element, certainly is a stretch on the evolution idea. Turning the reasoning around, one can speculate that such primitive life forms have evolved in a very different environment, where the base elements of their make up were abundant, which is not the case on Earth. The late Prof. Terry Beveridge of University of Guelph, ON, Canada raised the idea on a speculative level, that such a characteristic biosignature imposed on a trace element like selenium may conceivably be useful in the search for evidence of extinct microbial communities in sedimentary deposits of extraterrestrial origin (i.e., Mars). These are challenging ideas, but there are potentially imminent benefits of using microorganisms to mass produce nanoparticles. Currently there is technical interest in tellurium with the aim of developing solar cells that have high efficiency to convert sunlight into electrical current. We are involved in photovoltaic technology research, and are developing CdTe detectors for X-ray detection. We have recently observed giant resonances in scintillators, and with doping the CdTe could be turned into PET (Positron Emission Tomography) detector material. Therefore we have interest in the electro-optical properties of Te and Se. Our study of collective excitations and giant resonances in X-ray and nuclear radiation detectors has initiated new models and approaches in detector research. It is well established that giant

  12. Photonic nanoarchitectures of biologic origin in butterflies and beetles

    Energy Technology Data Exchange (ETDEWEB)

    Biro, L.P., E-mail: biro@mfa.kfki.h [Research Institute for Technical Physics and Materials Science, H-1525 Budapest, POB 49 (Hungary)

    2010-05-25

    Photonic nanoarchitectures occurring in butterflies and beetles, which produce structural color in the visible range of the electromagnetic spectrum by the selective reflection of light, are investigated under the aspect of being used as possible 'blueprints' for artificial, bioinspired nanoarchitectures. The role of order and disorder and of regularity/irregularity in photonic nanoarchitectures of biologic origin is discussed. Three recent case studies are briefly reviewed for butterflies (Albulina metallica, Cyanophrys remus, Troides magellanus) and three for beetles (Hoeplia coerulea, Chrysochroa vittata, Charidotella egregia). The practical realization of bioinspired artificial structures is discussed for the A. metallica butterfly and for the C. vittata beetle.

  13. Photonic nanoarchitectures of biologic origin in butterflies and beetles

    International Nuclear Information System (INIS)

    Photonic nanoarchitectures occurring in butterflies and beetles, which produce structural color in the visible range of the electromagnetic spectrum by the selective reflection of light, are investigated under the aspect of being used as possible 'blueprints' for artificial, bioinspired nanoarchitectures. The role of order and disorder and of regularity/irregularity in photonic nanoarchitectures of biologic origin is discussed. Three recent case studies are briefly reviewed for butterflies (Albulina metallica, Cyanophrys remus, Troides magellanus) and three for beetles (Hoeplia coerulea, Chrysochroa vittata, Charidotella egregia). The practical realization of bioinspired artificial structures is discussed for the A. metallica butterfly and for the C. vittata beetle.

  14. Biodiversity: molecular biological domains, symbiosis and kingdom origins

    Science.gov (United States)

    Margulis, L.

    1992-01-01

    The number of extant species of organisms is estimated to be from fewer than 3 to more than 30 x 10(6) (May, 1992). Molecular biology, comparative genetics and ultrastructural analyses provide new insights into evolutionary relationships between these species, including increasingly precise ideas of how species and higher taxa have evolved from common ancestors. Accumulation of random mutations and large macromolecular sequence change in all organisms since the Proterozoic Eon has been importantly supplemented by acquisition of inherited genomes ('symbiogenesis'). Karyotypic alterations (polyploidization and karyotypic fissioning) have been added to these other mechanisms of species origin in plants and animals during the Phanerozoic Eon. The new evolution concepts (coupled with current rapid rates of species extinction and ignorance of the extent of biodiversity) prompted this analysis of the field of systematic biology and its role in the reorganization of extant species into higher taxa. Two superkingdoms (= Domains: Prokaryotae and Eukaryotae) and five kingdoms (Monera = Procaryotae or Bacteria; Protoctista: algae, amoebae, ciliates, foraminifera, oomycetes, slime molds, etc.; Mychota: 'true' fungi; Plantae: one phylum (division) of bryophytes and nine phyla of tracheophytes; and Animalia) are recognized. Two subkingdoms comprise the monera: the great diverse lineages are Archaebacteria and Eubacteria. The criteria for classification using molecular, ultrastructural and genetic data for this scheme are mentioned. For the first time since the nineteenth century, logical, technical definitions for each group are given with their time of appearance as inferred from the fossil record in the primary scientific literature. This classification scheme, which most closely reflects the evolutionary history, molecular biology, genetics and ultrastructure of extant life, requires changes in social organization of biologists, many of whom as botanists and zoologists, still

  15. Typicity in Potato: Characterization of Geographic Origin

    Directory of Open Access Journals (Sweden)

    Marco Manzelli

    2010-03-01

    Full Text Available A two-year study was carried out in three regions of Italy and the crop performance and the chemical composition of tubers of three typical potato varieties evaluated. Carbon and nitrogen tuber content was determined by means of an elemental analyzer and the other mineral elements by means of a spectrometer. The same determinations were performed on soil samples taken from experimental areas. The Principal Component Analysis, applied to the results of mineral element tuber analysis, permitted the classification of all potato tuber samples according to their geographic origin. Only a partial discrimination was obtained in function of potato varieties. Some correlations between mineral content in the tubers and in the soil were also detected. Analytical and statistical methods proved to be useful in verifying the authenticity of guaranteed geographical food denominations.

  16. The amphioxus genome illuminates vertebrate origins and cephalochordate biology

    Science.gov (United States)

    Holland, Linda Z.; Albalat, Ricard; Azumi, Kaoru; Benito-Gutiérrez, Èlia; Blow, Matthew J.; Bronner-Fraser, Marianne; Brunet, Frederic; Butts, Thomas; Candiani, Simona; Dishaw, Larry J.; Ferrier, David E.K.; Garcia-Fernàndez, Jordi; Gibson-Brown, Jeremy J.; Gissi, Carmela; Godzik, Adam; Hallböök, Finn; Hirose, Dan; Hosomichi, Kazuyoshi; Ikuta, Tetsuro; Inoko, Hidetoshi; Kasahara, Masanori; Kasamatsu, Jun; Kawashima, Takeshi; Kimura, Ayuko; Kobayashi, Masaaki; Kozmik, Zbynek; Kubokawa, Kaoru; Laudet, Vincent; Litman, Gary W.; McHardy, Alice C.; Meulemans, Daniel; Nonaka, Masaru; Olinski, Robert P.; Pancer, Zeev; Pennacchio, Len A.; Pestarino, Mario; Rast, Jonathan P.; Rigoutsos, Isidore; Robinson-Rechavi, Marc; Roch, Graeme; Saiga, Hidetoshi; Sasakura, Yasunori; Satake, Masanobu; Satou, Yutaka; Schubert, Michael; Sherwood, Nancy; Shiina, Takashi; Takatori, Naohito; Tello, Javier; Vopalensky, Pavel; Wada, Shuichi; Xu, Anlong; Ye, Yuzhen; Yoshida, Keita; Yoshizaki, Fumiko; Yu, Jr-Kai; Zhang, Qing; Zmasek, Christian M.; de Jong, Pieter J.; Osoegawa, Kazutoyo; Putnam, Nicholas H.; Rokhsar, Daniel S.; Satoh, Noriyuki; Holland, Peter W.H.

    2008-01-01

    Cephalochordates, urochordates, and vertebrates evolved from a common ancestor over 520 million years ago. To improve our understanding of chordate evolution and the origin of vertebrates, we intensively searched for particular genes, gene families, and conserved noncoding elements in the sequenced genome of the cephalochordate Branchiostoma floridae, commonly called amphioxus or lancelets. Special attention was given to homeobox genes, opsin genes, genes involved in neural crest development, nuclear receptor genes, genes encoding components of the endocrine and immune systems, and conserved cis-regulatory enhancers. The amphioxus genome contains a basic set of chordate genes involved in development and cell signaling, including a fifteenth Hox gene. This set includes many genes that were co-opted in vertebrates for new roles in neural crest development and adaptive immunity. However, where amphioxus has a single gene, vertebrates often have two, three, or four paralogs derived from two whole-genome duplication events. In addition, several transcriptional enhancers are conserved between amphioxus and vertebrates—a very wide phylogenetic distance. In contrast, urochordate genomes have lost many genes, including a diversity of homeobox families and genes involved in steroid hormone function. The amphioxus genome also exhibits derived features, including duplications of opsins and genes proposed to function in innate immunity and endocrine systems. Our results indicate that the amphioxus genome is elemental to an understanding of the biology and evolution of nonchordate deuterostomes, invertebrate chordates, and vertebrates. PMID:18562680

  17. Can chimpanzee biology highlight human origin and evolution?

    Science.gov (United States)

    Roffman, Itai; Nevo, Eviatar

    2010-07-01

    The closest living relatives of humans are their chimpanzee/bonobo (Pan) sister species, members of the same subfamily "Homininae". This classification is supported by over 50 years of research in the fields of chimpanzee cultural diversity, language competency, genomics, anatomy, high cognition, psychology, society, self-consciousness and relation to others, tool use/production, as well as Homo level emotions, symbolic competency, memory recollection, complex multifaceted problem-solving capabilities, and interspecies communication. Language competence and symbolism can be continuously bridged from chimpanzee to man. Emotions, intercommunity aggression, body language, gestures, facial expressions, and vocalization of intonations seem to parallel between the sister taxa Homo and Pan. The shared suite of traits between Pan and Homo genus demonstrated in this article integrates old and new information on human-chimpanzee evolution, bilateral informational and cross-cultural exchange, promoting the urgent need for Pan cultures in the wild to be protected, as they are part of the cultural heritage of mankind. Also, we suggest that bonobos, Pan paniscus, based on shared traits with Australopithecus, need to be included in Australopithecine's subgenus, and may even represent living-fossil Australopithecines. Unfolding bonobo and chimpanzee biology highlights our common genetic and cultural evolutionary origins. PMID:23908781

  18. Can Chimpanzee Biology Highlight Human Origin and Evolution?

    Directory of Open Access Journals (Sweden)

    Itai Roffman

    2010-07-01

    Full Text Available The closest living relatives of humans are their chimpanzee/bonobo (Pan sister species, members of the same subfamily “Homininae”. This classification is supported by over 50 years of research in the fields of chimpanzee cultural diversity, language competency, genomics, anatomy, high cognition, psychology, society, self-consciousness and relation to others, tool use/production, as well as Homo level emotions, symbolic competency, memory recollection, complex multifaceted problem-solving capabilities, and interspecies communication. Language competence and symbolism can be continuously bridged from chimpanzee to man. Emotions, intercommunity aggression, body language, gestures, facial expressions, and vocalization of intonations seem to parallel between the sister taxa Homo and Pan. The shared suite of traits between Pan and Homo genus demonstrated in this article integrates old and new information on human–chimpanzee evolution, bilateral informational and cross-cultural exchange, promoting the urgent need for Pan cultures in the wild to be protected, as they are part of the cultural heritage of mankind. Also, we suggest that bonobos, Pan paniscus, based on shared traits with Australopithecus, need to be included in Australopithecine’s subgenus, and may even represent living-fossil Australopithecines. Unfolding bonobo and chimpanzee biology highlights our common genetic and cultural evolutionary origins.

  19. Can Chimpanzee Biology Highlight Human Origin and Evolution?

    Science.gov (United States)

    Roffman, Itai; Nevo, Eviatar

    2010-01-01

    The closest living relatives of humans are their chimpanzee/bonobo (Pan) sister species, members of the same subfamily “Homininae”. This classification is supported by over 50 years of research in the fields of chimpanzee cultural diversity, language competency, genomics, anatomy, high cognition, psychology, society, self-consciousness and relation to others, tool use/production, as well as Homo level emotions, symbolic competency, memory recollection, complex multifaceted problem-solving capabilities, and interspecies communication. Language competence and symbolism can be continuously bridged from chimpanzee to man. Emotions, intercommunity aggression, body language, gestures, facial expressions, and vocalization of intonations seem to parallel between the sister taxa Homo and Pan. The shared suite of traits between Pan and Homo genus demonstrated in this article integrates old and new information on human–chimpanzee evolution, bilateral informational and cross-cultural exchange, promoting the urgent need for Pan cultures in the wild to be protected, as they are part of the cultural heritage of mankind. Also, we suggest that bonobos, Pan paniscus, based on shared traits with Australopithecus, need to be included in Australopithecine’s subgenus, and may even represent living-fossil Australopithecines. Unfolding bonobo and chimpanzee biology highlights our common genetic and cultural evolutionary origins. PMID:23908781

  20. Generic Biologic Drugs Seem as Effective as Originals

    Science.gov (United States)

    ... versions aren't interchangeable with their products. The patents of many brand-name biologics are expiring and ... He's an associate professor in the department of Epidemiology at the Bloomberg School of Public Health, and ...

  1. Bioforensics: Characterization of biological weapons agents by NanoSIMS

    Energy Technology Data Exchange (ETDEWEB)

    Weber, P K; Ghosal, S; Leighton, T J; Wheeler, K E; Hutcheon, I D

    2007-02-26

    The anthrax attacks of Fall 2001 highlight the need to develop forensic methods based on multiple identifiers to determine the origin of biological weapons agents. Genetic typing methods (i.e., DNA and RNA-based) provide one attribution technology, but genetic information alone is not usually sufficient to determine the provenance of the material. Non-genetic identifiers, including elemental and isotopic signatures, provide complementary information that can be used to identify the means, geographic location and date of production. Under LDRD funding, we have successfully developed the techniques necessary to perform bioforensic characterization with the NanoSIMS at the individual spore level. We have developed methods for elemental and isotopic characterization at the single spore scale. We have developed methods for analyzing spore sections to map elemental abundance within spores. We have developed rapid focused ion beam (FIB) sectioning techniques for spores to preserve elemental and structural integrity. And we have developed a high-resolution depth profiling method to characterize the elemental distribution in individual spores without sectioning. We used these newly developed methods to study the controls on elemental abundances in spores, characterize the elemental distribution of in spores, and to study elemental uptake by spores. Our work under this LDRD project attracted FBI and DHS funding for applied purposes.

  2. Chains of Magnetite Crystals in the Meteorite ALH84001: Evidence of Biological Origin

    Science.gov (United States)

    Friedmann, E. I.; Wierzchos, J.; Ascaso, C.; Winklhofer, M.

    2001-01-01

    The presence of magnetite crystal chains, missing evidence for their biological origin, as well as five morphological characteristics incompatible with a nonbiological origin are demonstrated by high-power stereo backscattered scanning electron microscopy. Additional information is contained in the original extended abstract.

  3. The amphioxus genome illuminates vertebrate origins and cephalochordate biology

    Czech Academy of Sciences Publication Activity Database

    Holland, L. Z.; Albalat, R.; Azumi, K.; Gutierrez, E.B.; Blow, M.J.; Bronner-Fraser, M.; Brunet, F.; Butts, T.; Candiani, S.; Dishaw, L. J.; Ferrier, D.E.K.; Garcia-Fernandez, J.; Gibson-Brown, J.J.; Gissi, C.; Godzik, A.; Hallbook, F.; Hirose, D.; Hosomichi, K.; Ikuta, T.; Inoko, H.; Kasahara, M.; Kasamatsu, J.; Kawashima, T.; Kimura, A.; Kobayashi, M.; Kozmik, Zbyněk; Kubokawa, K.; Laudet, V.; Litman, G.W.; McHardy, A.; Meulemans, D.; Nonaka, M.; Olinski, R.P.; Pancer, Z.; Pennacchio, L.A.; Pestarino, M.; Rast, J.P.; Rigoutsos, I.; Robinson-Rechavi, M.; Roch, G.; Saiga, H.; Sasakura, Y.; Satake, M.; Satou, Y.; Schubert, M.; Sherwood, N.; Shiina, T.; Takatori, N.; Tello, J.; Vopálenský, Pavel; Wada, S.; Xu, A.; Ye, Y.; Yoshida, K.; Yoshizaki, F.; Yu, J.K.; Zhang, Q.; Zmasek, C.M.; De Jong, P.J.; Osoegawa, K.; Putnam, N. H.; Rokhsar, D. S.; Satoh, N.; Holland, P.W.H.

    2008-01-01

    Roč. 18, č. 7 (2008), s. 1100-1111. ISSN 1088-9051 R&D Projects: GA MŠk(CZ) 1M0520 Institutional research plan: CEZ:AV0Z50520514 Keywords : evolution * amphioxus genome * opsin Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 10.176, year: 2008

  4. Generation and characterization of biological aerosols for laser measurements

    Energy Technology Data Exchange (ETDEWEB)

    Cheng, Yung-Sung; Barr, E.B.

    1995-12-01

    Concerns for proliferation of biological weapons including bacteria, fungi, and viruses have prompted research and development on methods for the rapid detection of biological aerosols in the field. Real-time instruments that can distinguish biological aerosols from background dust would be especially useful. Sandia National Laboratories (SNL) is developing a laser-based, real-time instrument for rapid detection of biological aerosols, and ITRI is working with SNL scientists and engineers to evaluate this technology for a wide range of biological aerosols. This paper describes methods being used to generate the characterize the biological aerosols for these tests. In summary, a biosafe system has been developed for generating and characterizing biological aerosols and using those aerosols to test the SNL laser-based real-time instrument. Such tests are essential in studying methods for rapid detection of airborne biological materials.

  5. The origins of ambient biological sound from coral reef ecosystems in the Line Islands archipelago.

    Science.gov (United States)

    Freeman, Simon E; Rohwer, Forest L; D'Spain, Gerald L; Friedlander, Alan M; Gregg, Allison K; Sandin, Stuart A; Buckingham, Michael J

    2014-04-01

    Although ambient biological underwater sound was first characterized more than 60 years ago, attributing specific components of ambient sound to their creators remains a challenge. Noise produced by snapping shrimp typically dominates the ambient spectra near tropical coasts, but significant unexplained spectral variation exists. Here, evidence is presented indicating that a discernible contribution to the ambient sound field over coral reef ecosystems in the Line Islands archipelago originates from the interaction of hard-shelled benthic macro-organisms with the coral substrate. Recordings show a broad spectral peak centered between 14.30 and 14.63 kHz, incoherently added to a noise floor typically associated with relatively "white" snapping shrimp sounds. A 4.6 to 6.2 dB increase of pressure spectral density level in the 11 to 17 kHz band occurs simultaneously with an increase in benthic invertebrate activity at night, quantified through time-lapse underwater photography. Spectral-level-filtered recordings of hermit crabs Clibanarius diugeti in quiet aquarium conditions reveal that transient sounds produced by the interaction between the crustaceans' carapace, shell, and coral substrate are spectrally consistent with Line Islands recordings. Coral reef ecosystems are highly interconnected and subtle yet important ecological changes may be detected quantitatively through passive monitoring that utilizes the acoustic byproducts of biological activity. PMID:25234977

  6. Using Raman spectroscopy to characterize biological materials.

    Science.gov (United States)

    Butler, Holly J; Ashton, Lorna; Bird, Benjamin; Cinque, Gianfelice; Curtis, Kelly; Dorney, Jennifer; Esmonde-White, Karen; Fullwood, Nigel J; Gardner, Benjamin; Martin-Hirsch, Pierre L; Walsh, Michael J; McAinsh, Martin R; Stone, Nicholas; Martin, Francis L

    2016-04-01

    Raman spectroscopy can be used to measure the chemical composition of a sample, which can in turn be used to extract biological information. Many materials have characteristic Raman spectra, which means that Raman spectroscopy has proven to be an effective analytical approach in geology, semiconductor, materials and polymer science fields. The application of Raman spectroscopy and microscopy within biology is rapidly increasing because it can provide chemical and compositional information, but it does not typically suffer from interference from water molecules. Analysis does not conventionally require extensive sample preparation; biochemical and structural information can usually be obtained without labeling. In this protocol, we aim to standardize and bring together multiple experimental approaches from key leaders in the field for obtaining Raman spectra using a microspectrometer. As examples of the range of biological samples that can be analyzed, we provide instructions for acquiring Raman spectra, maps and images for fresh plant tissue, formalin-fixed and fresh frozen mammalian tissue, fixed cells and biofluids. We explore a robust approach for sample preparation, instrumentation, acquisition parameters and data processing. By using this approach, we expect that a typical Raman experiment can be performed by a nonspecialist user to generate high-quality data for biological materials analysis. PMID:26963630

  7. Characterization of a Trypanosoma rangeli Strain of Colombian Origin

    Directory of Open Access Journals (Sweden)

    Zuñiga C

    1997-01-01

    Full Text Available A Colombian strain of Trypanosoma rangeli was characterized by analyzing its behaviour in different axenic and cellular culture, its infection rate and the histopathological lesions produced in experimental animals. Although slight inflammatory infiltrations were shown in different histopathological sections, no pseudocysts could be observed. Grace's insect medium is better than liver infusion tryptose or artificial triatomine urine supplemented with proline when studying T. rangeli metacyclogenesis, with a peak of 32% trypomastigotes. High infection rates were found in VERO and J774 cells. Because of its 100% infectivity rates and adequacy of parasitemia levels, C23 strain is a suitable model of T. rangeli biology study

  8. Curation of characterized glycoside hydrolases of fungal origin.

    Science.gov (United States)

    Murphy, Caitlin; Powlowski, Justin; Wu, Min; Butler, Greg; Tsang, Adrian

    2011-01-01

    Fungi produce a wide range of extracellular enzymes to break down plant cell walls, which are composed mainly of cellulose, lignin and hemicellulose. Among them are the glycoside hydrolases (GH), the largest and most diverse family of enzymes active on these substrates. To facilitate research and development of enzymes for the conversion of cell-wall polysaccharides into fermentable sugars, we have manually curated a comprehensive set of characterized fungal glycoside hydrolases. Characterized glycoside hydrolases were retrieved from protein and enzyme databases, as well as literature repositories. A total of 453 characterized glycoside hydrolases have been cataloged. They come from 131 different fungal species, most of which belong to the phylum Ascomycota. These enzymes represent 46 different GH activities and cover 44 of the 115 CAZy GH families. In addition to enzyme source and enzyme family, available biochemical properties such as temperature and pH optima, specific activity, kinetic parameters and substrate specificities were recorded. To simplify comparative studies, enzyme and species abbreviations have been standardized, Gene Ontology terms assigned and reference to supporting evidence provided. The annotated genes have been organized in a searchable, online database called mycoCLAP (Characterized Lignocellulose-Active Proteins of fungal origin). It is anticipated that this manually curated collection of biochemically characterized fungal proteins will be used to enhance functional annotation of novel GH genes. Database URL: http://mycoCLAP.fungalgenomics.ca/. PMID:21622642

  9. Characterization plan for the 108-F Biological Laboratory

    International Nuclear Information System (INIS)

    This characterization plan describes the sample collection and sample analysis activities to characterize the 108-F Biological Laboratory, which is located at the Hanford Site in Richland, Washington. The analytical data will be used to identify the radiological contamination and presence of hazardous materials to support disposal of the demolition debris

  10. Should the teaching of biological evolution include the origin of life?

    OpenAIRE

    Lazcano, A; Peretó, Juli

    2010-01-01

    The development of mainstream research on the origin of life as an outcome of Darwinian evolution is discussed. It is argued that prebiotic evolution and the origin of life should not be excluded from the syllabus and should be part of classes on biological evolution, and that the transition from non-living to living matter is best understood when seen as part of evolutionary biology. The wide acceptance of evolutionary approaches to the study of the emergence of life in European and Latin Am...

  11. A hypothesis on the biological origins and social evolution of music and dance

    OpenAIRE

    Wang, Tianyan

    2015-01-01

    The origins of music and musical emotions is still an enigma, here I propose a comprehensive hypothesis on the origins and evolution of music, dance, and speech from a biological and sociological perspective. I suggest that every pitch interval between neighboring notes in music represents corresponding movement pattern through interpreting the Doppler effect of sound, which not only provides a possible explanation for the transposition invariance of music, but also integrates music and dance...

  12. Characterization and biological significance of deacetylase

    International Nuclear Information System (INIS)

    An attempt is made to clarify the mechanism by which the one known deacetylase inhibitor, sodium butyrate, works and to identify other inhibitors of deacetylase activity. In doing so it was hoped to characterize the enzyme and to better understand its role in regulating genomic expression. The data showed that deacetylases not only showed activity toward their natural histone substrates, but also toward free acetyllysine and to a lesser degree toward acetylcholine, the latter being the natural substrate for acetylcholinesterases. Conversely, acetylcholinesterase was shown to be able to deacetylate groups from acetyllysine and acetylated histones. Decamethonium bromide, a well-known binder of acetylcholinesterase would not absorb the deacetylase. Diisopropylfluorophosphate (DFP), an anti-cholinesterase, exhibited no inhibitory effect on deacetylase activity, while acetylcholinesterase showed little or no sensitivity to butyrate inhibition. These findings along with the use of 3H-DFP binding to fingerprint enzyme bands on gels became the basic criteria for distinguishing between deacetylase and acetylcholinesterase activity

  13. SYNTHESIS, CHARACTERIZATION AND BIOLOGICAL ACTIVITY OF POLYKETONES

    Institute of Scientific and Technical Information of China (English)

    Ismail A.Alkskas; Altaher M.Alhubge; Faizul Azam

    2013-01-01

    Polyketone resins have been prepared by the Friedel-Crafts polymerization of dithiophenylidenecyclopentanone (Ⅰ),dithiophenylidenecyclohexanone (Ⅱ) and dithiophenylideneacetone (Ⅲ) with adipoyl,sebacoyl and terephthaloyl dichlorides using boron trifluoride as catalyst and carbon disulphide as solvent.Polymers were characterized with IR,1H-NMR,and the results showed the presence of carbonyl of ketonic groups in the main chain.The polyketones have inherent viscosities of 0.40-0.70 dL/g.All the polymers are semicrystalline and most of them are partially soluble in most common organic solvents but freely soluble in aprotic solvents.The temperatures of 50% weight loss are as high as 185℃ to 280℃ in air,indicating that these aromatic polyketones have excellent thermal stability.All the polyketones were tested for their antimicrobial activity against bacteria and fungi.

  14. Monophyletic Origin of the Metazoan Nervous System: Characterizing

    Science.gov (United States)

    Watkins, Russell; Beckenbach, Andrew

    In the absence of additional cases to be studied, our understanding of the likelihood of intelligent life evolving elsewhere in the universe must be framed within the context of the evolution of intelligence on this planet. Towards this end a valid model of the evolution of animal life, and in particular of the nervous system, is key. Models which describe the development of complexity within the nervous system can be positively misleading if they are not grounded in an accurate model of the true relationships of the animal phyla. If fact the evolution of animal life at its earliest stages, from protists to the sponges, Cnidaria, and Ctenophora and onward to the bilateral animal phyla is poorly characterized. Recently numerous phylogenies of the early animal radiation have been published based upon DNA sequence data, with conflicting and poorly supported results. A polyphyletic origin for the animal nervous system has been implied by the results of several studies, which would lead to the conclusion that some characteristics of the nervous systems of higher and lower animals could be convergent. We show that an equally parsimonious interpretation of the molecular sequence data published thus far is that it reflects rapid speciation events early in animal evolution among the classical ``diploblast'' phyla, as well as accelerated DNA sequence divergence among the higher animals. This could be interpreted as support for a classical phylogeny of the animal kingdom, and thus of a strictly monophyletic origin for the nervous system.

  15. The Surface Coat of Plant-Parasitic Nematodes: Chemical Composition, Origin, and Biological Role—A Review

    OpenAIRE

    Spiegel, Y.; McClure, M. A.

    1995-01-01

    Chemical composition, origin, and biological role of the surface coat (SC) of plant-parasitic nematodes are described and compared with those of animal-parasitic and free-living nematodes. The SC of the plant-parasitic nematodes is 5-30 nm thick and is characterized by a net negative charge. It consists, at least in part, of glycoproteins and proteins with various molecular weights, depending upon the nematode species. The lability of its components and the binding of human red blood cells to...

  16. Biological and Biomedical Coatings Handbook Processing and Characterization

    CERN Document Server

    Zhang, Sam

    2011-01-01

    Written in a versatile, contemporary style that will benefit both novice and expert alike, Biological and Biomedical Coatings Handbook, Two-Volume Set covers the state of the art in the development and implementation of advanced thin films and coatings in the biological field. Consisting of two volumes--Processing and Characterization and Applications--this handbook details the latest understanding of advances in the design and performance of biological and biomedical coatings, covering a vast array of material types, including bio-ceramics, polymers, glass, chitosan, and nanomaterials. Contri

  17. Final characterization report for the 108-F Biological Laboratory

    International Nuclear Information System (INIS)

    This report provides a compilation of characterization data for the 108-F Biological Laboratory collected during the period of May 7, 1996 through August 29, 1996. The 108-F Biology Laboratory is located on the Hanford Site in Richland, Washington. The characterization activities were organized and implemented to evaluate the radiological status of the laboratory and to identify hazardous materials. This report reflects the current conditions and status of the laboratory. Information in this report is intended to be utilized to prepare an accurate cost estimate for building demolition, to aid in planning decontamination and demolition activities, and allow proper disposal of demolition debris

  18. Distinguishing geology from biology in the Ediacaran Doushantuo biota relaxes constraints on the timing of the origin of bilaterians.

    Science.gov (United States)

    Cunningham, John A; Thomas, Ceri-Wyn; Bengtson, Stefan; Kearns, Stuart L; Xiao, Shuhai; Marone, Federica; Stampanoni, Marco; Donoghue, Philip C J

    2012-06-22

    The Ediacaran Doushantuo biota has yielded fossils that include the oldest widely accepted record of the animal evolutionary lineage, as well as specimens with alleged bilaterian affinity. However, these systematic interpretations are contingent on the presence of key biological structures that have been reinterpreted by some workers as artefacts of diagenetic mineralization. On the basis of chemistry and crystallographic fabric, we characterize and discriminate phases of mineralization that reflect: (i) replication of original biological structure, and (ii) void-filling diagenetic mineralization. The results indicate that all fossils from the Doushantuo assemblage preserve a complex mélange of mineral phases, even where subcellular anatomy appears to be preserved. The findings allow these phases to be distinguished in more controversial fossils, facilitating a critical re-evaluation of the Doushantuo fossil assemblage and its implications as an archive of Ediacaran animal diversity. We find that putative subcellular structures exhibit fabrics consistent with preservation of original morphology. Cells in later developmental stages are not in original configuration and are therefore uninformative concerning gastrulation. Key structures used to identify Doushantuo bilaterians can be dismissed as late diagenetic artefacts. Therefore, when diagenetic mineralization is considered, there is no convincing evidence for bilaterians in the Doushantuo assemblage. PMID:22319125

  19. Thermal property of biological tissues characterized by piezoelectric photoacoustic technique

    Institute of Scientific and Technical Information of China (English)

    GAO Chunming; ZHANG Shuyi; CHEN Yan; SHUI Xiuji; YANG Yuetao

    2004-01-01

    A photoacoustic piezoelectric method based on a simplified thermoelastic theory is employed to determine thermal diffusivities of biological tissues. The thermal diffusivities of porcine tissues with different preparation conditions, including fresh, dry and specially prepared conditions, are characterized. Comparing the experimental evaluated diffusivities of the tissues in three conditions with each other, it can be seen that the diffusivities of the fresh tissues are the biggest and the diffusivities of the specially prepared tissues are bigger than that of the dry ones generally. The results show that the piezoelectric photoacoustic method is especially effective for determining macro-effective (average) thermal diffusivities of biological materials with micro- inhomogeneity and easy to be performed, which can provide useful information for researching thermal characters of biological tissues.

  20. Characterization of Cucumber Mosaic Virus Originating from Cucurbits in Serbia

    Directory of Open Access Journals (Sweden)

    Ana Vučurović

    2011-01-01

    Full Text Available Cucumber mosaic virus (CMV is considered one of the most economically importantplant viruses and has a worldwide distribution and a very wide host range including plantsfrom family Cucurbitaceae. In Serbia, on cucurbits CMV was detected in single and mixedinfections with Zucchini yellow mosaic virus (ZYMV and Watermelon mosaic virus (WMV. Viruses,including CMV, are constantly present in cucurbit crops, but their frequency changesby year and locality. Surveys and sample collections were conducted in cucurbit crops inthe period from 2008 to 2009 at 15 localities in Vojvodina province, and sample testing wascarried out using the DAS-ELISA method and commercially available antisera for six economicallymost important cucurbit viruses. In 2008, a total of 51 samples were collected from13 cucurbit crops of oilseed pumpkin Olinka variety, squash, and bottle gourd and CMV wasdetected in a total of 55% of tested samples with symptoms of viral infection. The most commoninfectious type was mixed infection with ZYMV and WMV (35.3%, and then mixedinfection with ZYMV (17.7% and WMV (2%. A total of 599 symptomatic samples of oilseedpumpkin Olinka variety, zucchini squash varieties Beogradska and Tosca, squash, and wintersquash were collected in 15 cucurbits crops in 2009. CMV was present in 4.4% of totalcollected samples, in single infections in 1.3%, and in mixed with WMV or ZYMV in 1.3%, and1.8%. Five CMV isolates were obtained by mechanical inoculations of N. glutinosa and oneof them was selected for further biological characterization. Test plants which were describedto be hosts of CMV expressed symptoms characteristic for those caused by CMV afterinoculations by isolate 115-08. CMV specific primers Au1u/Au2d were used to amplify an850 bp fragment using RT-PCR method. Amplified fragment encodes the entire viral coatprotein (CP gene and partial 5’ and 3’ UTRs of two selected CMV isolates. Amplified fragmentswere sequenced and deposited in the NCBI, where

  1. Origin and Biology of Simian Immunodeficiency Virus in Wild-Living Western Gorillas▿ †

    OpenAIRE

    Takehisa, Jun; Kraus, Matthias H.; Ayouba, Ahidjo; Bailes, Elizabeth; Van Heuverswyn, Fran; Decker, Julie M.; Li, Yingying; Rudicell, Rebecca S.; Learn, Gerald H.; Neel, Cecile; Ngole, Eitel Mpoudi; Shaw, George M.; Peeters, Martine; Sharp, Paul M.; Hahn, Beatrice H.

    2008-01-01

    Western lowland gorillas (Gorilla gorilla gorilla) are infected with a simian immunodeficiency virus (SIVgor) that is closely related to chimpanzee and human immunodeficiency viruses (SIVcpz and HIV-1, respectively) in west central Africa. Although existing data suggest a chimpanzee origin for SIVgor, a paucity of available sequences has precluded definitive conclusions. Here, we report the molecular characterization of one partial (BQ664) and three full-length (CP684, CP2135, and CP2139) SIV...

  2. Comparative phenotypic characterization of keratinocytes originating from hair follicles

    Czech Academy of Sciences Publication Activity Database

    Klíma, Jiří; Smetana Jr., K.; Motlík, Jan; Plzáková, Z.; Liu, F. T.; Štork, J.; Kaltner, H.; Chovanec, M.; Dvořánková, B.; André, S.; Gabius, H. J.

    2005-01-01

    Roč. 36, - (2005), s. 89-96 R&D Projects: GA MŠk(CZ) LN00A065; GA AV ČR IBS4050005; GA ČR(CZ) GA304/04/0171 Institutional research plan: CEZ:AV0Z50450515 Keywords : hair follicles Subject RIV: EB - Genetics ; Molecular Biology

  3. Physical and biological characterization of a seawater ultraviolet radiation sterilizer

    International Nuclear Information System (INIS)

    The physical and biological characterization of a seawater ultraviolet (UV) sterilizer is described. The physical characterization was performed using radiochromic dye films by evaluating the uniformity of the radiant exposure along each lamp, the effect of the radiation from one lamp on the array of adjacent lamps, and by measuring the UV radiation absorption of seawater with respect to distilled water. The biological characterization was performed by measuring the amount of reduction of bacteria in stored seawater after different filtration and UV treatments. Among the filtration methods tested, differential filtration (5, 3 and 0.45 μm filters connected in series) caused the highest bacterial reduction factor of 60%. UV radiant exposures of 212, 424, 636 and 848 J m-2 yielded bacteria reduction factors of 99.86, 99.969, 99.997 and 100%, respectively, for populations of Vibrio and Pseudomonas bacteria present in stored seawater. It is concluded that the system is useful for water disinfection when 1, 2 or 3 lamps are on; when 4 lamps are used the treated water becomes sterile. (author)

  4. A hypothesis on the biological origins and social evolution of music and dance.

    Science.gov (United States)

    Wang, Tianyan

    2015-01-01

    The origins of music and musical emotions is still an enigma, here I propose a comprehensive hypothesis on the origins and evolution of music, dance, and speech from a biological and sociological perspective. I suggest that every pitch interval between neighboring notes in music represents corresponding movement pattern through interpreting the Doppler effect of sound, which not only provides a possible explanation for the transposition invariance of music, but also integrates music and dance into a common form-rhythmic movements. Accordingly, investigating the origins of music poses the question: why do humans appreciate rhythmic movements? I suggest that human appreciation of rhythmic movements and rhythmic events developed from the natural selection of organisms adapting to the internal and external rhythmic environments. The perception and production of, as well as synchronization with external and internal rhythms are so vital for an organism's survival and reproduction, that animals have a rhythm-related reward and emotion (RRRE) system. The RRRE system enables the appreciation of rhythmic movements and events, and is integral to the origination of music, dance and speech. The first type of rewards and emotions (rhythm-related rewards and emotions, RRREs) are evoked by music and dance, and have biological and social functions, which in turn, promote the evolution of music, dance and speech. These functions also evoke a second type of rewards and emotions, which I name society-related rewards and emotions (SRREs). The neural circuits of RRREs and SRREs develop in species formation and personal growth, with congenital and acquired characteristics, respectively, namely music is the combination of nature and culture. This hypothesis provides probable selection pressures and outlines the evolution of music, dance, and speech. The links between the Doppler effect and the RRREs and SRREs can be empirically tested, making the current hypothesis scientifically

  5. A hypothesis on the biological origins and social evolution of music and dance

    Directory of Open Access Journals (Sweden)

    Tianyan eWang

    2015-02-01

    Full Text Available The origins of music and musical emotions is still an enigma, here I propose a comprehensive hypothesis on the origins and evolution of music, dance and speech from a biological and sociological perspective. I suggest that every pitch interval between neighboring notes in music represents corresponding movement pattern through interpreting the Doppler effect of sound, which not only provides a possible explanation to the transposition invariance of music, but also integrates music and dance into a common form—rhythmic movements. Accordingly, investigating the origins of music poses the question: why do humans appreciate rhythmic movements? I suggest that human appreciation of rhythmic movements and rhythmic events developed from the natural selection of organisms adapting to the internal and external rhythmic environments. The perception and production of, as well as synchronization with external and internal rhythms are so vital for an organism’s survival and reproduction, that animals have a rhythm-related reward and emotion (RRRE system. The RRRE system enables the appreciation of rhythmic movements and events, and is integral to the origination of music, dance and speech. The first type of rewards and emotions (rhythm-related rewards and emotions, RRREs are evoked by music and dance, and have biological and social functions, which in turn, promote the evolution of music, dance and speech. These functions also evoke a second type of rewards and emotions, which I name society-related rewards and emotions (SRREs. The neural circuits of RRREs and SRREs develop in species formation and personal growth, with congenital and acquired characteristics, respectively, namely music is the combination of nature and culture. This hypothesis provides probable selection pressures and outlines the evolution of music, dance and speech. The links between the Doppler effect and the RRREs and SRREs can be empirically tested, making the current hypothesis

  6. A qualitative characterization of an introductory college nonmajors biology laboratory

    Science.gov (United States)

    Lee, Cherin Ann

    The nature of an undergraduate, nonmajors biology laboratory was investigated in this study. Student participants were enrolled in a general education biology laboratory course at the University of Northern Iowa. The researcher's purpose was to gain a characterization of the instructional format and laboratory activities experienced by students. Interpretation of student and instructor responses enabled an insider's view of the biology laboratory. The laboratory period was consistently described by both students and instructors as having three parts, Beginning, Middle, and End, with the End being of special importance for conceptual development. The instructional format of the three instructors differed within the three portions of the laboratory period, ranging from an inquiry-oriented, partial learning cycle to a fairly expository model labeled inform/verify/practice. There was striking similarity in intrasectional student and teacher descriptions of instructional format. Additionally, students experiencing the alternate instructor provided the same characterizations of instructional format as those provided by the instructor's usual students. There were no discernible patterns of instructional format based on sex or reasoning level. In addition to the central role of instructional format, three areas of importance emerged: the social aspects of learning, the collaborative and cooperative nature of laboratory work and learning, and the role of self-efficacy. Theory developed from and grounded in the data showed six factors important in the introductory college biology laboratory: collaborative and cooperative learning, student-student and teacher-student interactions, attitude and self-efficacy, learning process and learning style, effective instructional format, and science content. These factors were found to be similar to factors identified in the literature as important in K-12 science education. These factors were set in the context of schooling and learning

  7. The Role of Stochastic Models in Interpreting the Origins of Biological Chirality

    Directory of Open Access Journals (Sweden)

    Gábor Lente

    2010-04-01

    Full Text Available This review summarizes recent stochastic modeling efforts in the theoretical research aimed at interpreting the origins of biological chirality. Stochastic kinetic models, especially those based on the continuous time discrete state approach, have great potential in modeling absolute asymmetric reactions, experimental examples of which have been reported in the past decade. An overview of the relevant mathematical background is given and several examples are presented to show how the significant numerical problems characteristic of the use of stochastic models can be overcome by non-trivial, but elementary algebra. In these stochastic models, a particulate view of matter is used rather than the concentration-based view of traditional chemical kinetics using continuous functions to describe the properties system. This has the advantage of giving adequate description of single-molecule events, which were probably important in the origin of biological chirality. The presented models can interpret and predict the random distribution of enantiomeric excess among repetitive experiments, which is the most striking feature of absolute asymmetric reactions. It is argued that the use of the stochastic kinetic approach should be much more widespread in the relevant literature.

  8. Characterizing the original ejection velocity field of the Koronis family

    CERN Document Server

    Carruba, Valerio; Aljbaae, Safwan

    2016-01-01

    An asteroid family forms as a result of a collision between an impactor and a parent body. The fragments with ejection speeds higher than the escape velocity from the parent body can escape its gravitational pull. The cloud of escaping debris can be identified by the proximity of orbits in proper element, or frequency, domains. Obtaining estimates of the original ejection speed can provide valuable constraints on the physical processes occurring during collision, and used to calibrate impact simulations. Unfortunately, proper elements of asteroids families are modified by gravitational and non-gravitational effects, such as resonant dynamics, encounters with massive bodies, and the Yarkovsky effect, such that information on the original ejection speeds is often lost, especially for older, more evolved families. It has been recently suggested that the distribution in proper inclination of the Koronis family may have not been significantly perturbed by local dynamics, and that information on the component of th...

  9. Characterizing the original ejection velocity field of the Koronis family

    Science.gov (United States)

    Carruba, V.; Nesvorný, D.; Aljbaae, S.

    2016-06-01

    An asteroid family forms as a result of a collision between an impactor and a parent body. The fragments with ejection speeds higher than the escape velocity from the parent body can escape its gravitational pull. The cloud of escaping debris can be identified by the proximity of orbits in proper element, or frequency, domains. Obtaining estimates of the original ejection speed can provide valuable constraints on the physical processes occurring during collision, and used to calibrate impact simulations. Unfortunately, proper elements of asteroids families are modified by gravitational and non-gravitational effects, such as resonant dynamics, encounters with massive bodies, and the Yarkovsky effect, such that information on the original ejection speeds is often lost, especially for older, more evolved families. It has been recently suggested that the distribution in proper inclination of the Koronis family may have not been significantly perturbed by local dynamics, and that information on the component of the ejection velocity that is perpendicular to the orbital plane (vW), may still be available, at least in part. In this work we estimate the magnitude of the original ejection velocity speeds of Koronis members using the observed distribution in proper eccentricity and inclination, and accounting for the spread caused by dynamical effects. Our results show that (i) the spread in the original ejection speeds is, to within a 15% error, inversely proportional to the fragment size, and (ii) the minimum ejection velocity is of the order of 50 m/s, with larger values possible depending on the orbital configuration at the break-up.

  10. Gene flow and biological conflict systems in the origin and evolution of eukaryotes.

    Science.gov (United States)

    Aravind, L; Anantharaman, Vivek; Zhang, Dapeng; de Souza, Robson F; Iyer, Lakshminarayan M

    2012-01-01

    The endosymbiotic origin of eukaryotes brought together two disparate genomes in the cell. Additionally, eukaryotic natural history has included other endosymbiotic events, phagotrophic consumption of organisms, and intimate interactions with viruses and endoparasites. These phenomena facilitated large-scale lateral gene transfer and biological conflicts. We synthesize information from nearly two decades of genomics to illustrate how the interplay between lateral gene transfer and biological conflicts has impacted the emergence of new adaptations in eukaryotes. Using apicomplexans as example, we illustrate how lateral transfer from animals has contributed to unique parasite-host interfaces comprised of adhesion- and O-linked glycosylation-related domains. Adaptations, emerging due to intense selection for diversity in the molecular participants in organismal and genomic conflicts, being dispersed by lateral transfer, were subsequently exapted for eukaryote-specific innovations. We illustrate this using examples relating to eukaryotic chromatin, RNAi and RNA-processing systems, signaling pathways, apoptosis and immunity. We highlight the major contributions from catalytic domains of bacterial toxin systems to the origin of signaling enzymes (e.g., ADP-ribosylation and small molecule messenger synthesis), mutagenic enzymes for immune receptor diversification and RNA-processing. Similarly, we discuss contributions of bacterial antibiotic/siderophore synthesis systems and intra-genomic and intra-cellular selfish elements (e.g., restriction-modification, mobile elements and lysogenic phages) in the emergence of chromatin remodeling/modifying enzymes and RNA-based regulation. We develop the concept that biological conflict systems served as evolutionary "nurseries" for innovations in the protein world, which were delivered to eukaryotes via lateral gene flow to spur key evolutionary innovations all the way from nucleogenesis to lineage-specific adaptations. PMID:22919680

  11. Characterizing seamless ligation cloning extract for synthetic biological applications.

    Science.gov (United States)

    Messerschmidt, Katrin; Hochrein, Lena; Dehm, Daniel; Schulz, Karina; Mueller-Roeber, Bernd

    2016-09-15

    Synthetic biology aims at designing and engineering organisms. The engineering process typically requires the establishment of suitable DNA constructs generated through fusion of multiple protein coding and regulatory sequences. Conventional cloning techniques, including those involving restriction enzymes and ligases, are often of limited scope, in particular when many DNA fragments must be joined or scar-free fusions are mandatory. Overlap-based-cloning methods have the potential to overcome such limitations. One such method uses seamless ligation cloning extract (SLiCE) prepared from Escherichia coli cells for straightforward and efficient in vitro fusion of DNA fragments. Here, we systematically characterized extracts prepared from the unmodified E. coli strain DH10B for SLiCE-mediated cloning and determined DNA sequence-associated parameters that affect cloning efficiency. Our data revealed the virtual absence of length restrictions for vector backbone (up to 13.5 kbp) and insert (90 bp to 1.6 kbp). Furthermore, differences in GC content in homology regions are easily tolerated and the deletion of unwanted vector sequences concomitant with targeted fragment insertion is straightforward. Thus, SLiCE represents a highly versatile DNA fusion method suitable for cloning projects in virtually all molecular and synthetic biology projects. PMID:27311554

  12. Quantitative characterization of nanoparticle agglomeration within biological media

    Energy Technology Data Exchange (ETDEWEB)

    Hondow, Nicole, E-mail: n.hondow@leeds.ac.uk; Brydson, Rik [University of Leeds, Institute for Materials Research (United Kingdom); Wang, Peiyi [University of Leeds, Institute of Molecular and Cellular Biology (United Kingdom); Holton, Mark D.; Brown, M. Rowan; Rees, Paul; Summers, Huw D. [Swansea University, Centre for Nanohealth, College of Engineering (United Kingdom); Brown, Andy [University of Leeds, Institute for Materials Research (United Kingdom)

    2012-07-15

    Quantitative analysis of nanoparticle dispersion state within biological media is essential to understanding cellular uptake and the roles of diffusion, sedimentation, and endocytosis in determining nanoparticle dose. The dispersion of polymer-coated CdTe/ZnS quantum dots in water and cell growth medium with and without fetal bovine serum was analyzed by transmission electron microscopy (TEM) and dynamic light scattering (DLS) techniques. Characterization by TEM of samples prepared by plunge freezing the blotted solutions into liquid ethane was sensitive to the dispersion state of the quantum dots and enabled measurement of agglomerate size distributions even in the presence of serum proteins where DLS failed. In addition, TEM showed a reduced packing fraction of quantum dots per agglomerate when dispersed in biological media and serum compared to just water, highlighting the effect of interactions between the media, serum proteins, and the quantum dots. The identification of a heterogeneous distribution of quantum dots and quantum dot agglomerates in cell growth medium and serum by TEM will enable correlation with the previously reported optical metrology of in vitro cellular uptake of this quantum dot dispersion. In this paper, we present a comparative study of TEM and DLS and show that plunge-freeze TEM provides a robust assessment of nanoparticle agglomeration state.

  13. Characterization of a marine origin aerobic nitrifying-denitrifying bacterium.

    Science.gov (United States)

    Zheng, Hai-Yan; Liu, Ying; Gao, Xi-Yan; Ai, Guo-Min; Miao, Li-Li; Liu, Zhi-Pei

    2012-07-01

    The bacterial strain F6 was isolated from a biological aerated filter that is used for purifying recirculating water in a marine aquaculture system and was identified as Marinobacter sp. based on the analysis of its 16S rRNA gene sequence. Strain F6 showed efficient aerobic denitrifying ability. One hundred percent of nitrates and 73.10% of nitrites were removed, and the total nitrogen (TN) removal rates reached 50.08% and 33.03% under a high nitrate and nitrite concentration in the medium, respectively. N(2)O and (15)N(2), as revealed by GC-MS and GC-IRMS, were the products of aerobic denitrification. Factors affecting the growth and aerobic denitrifying performance of strain F6 were investigated. The results showed that the optimum aerobic denitrification conditions for strain F6 were the presence of sodium succinate as a carbon source, a C/N ratio of 15, salinity ranging from 32-35 g/L of NaCl, incubation temperature of 30°C, an initial pH of 7.5, and rotation speed of 150 rpm [dissolved oxygen (DO) 6.75 mg/L]. In addition, strain F6 was confirmed to be a heterotrophic nitrifier through its NO(2)(-) generation and 25.96% TN removal when NH(4)(+) was used as the sole N source. Therefore, strain F6, the first reported member of genus Marinobacter with aerobic heterotrophic nitrifying-denitrifying ability, is an excellent candidate for facilitating simultaneous nitrification and denitrification (SND) in industry and aquaculture wastewater. PMID:22578593

  14. Characterization of an orthovoltage biological irradiator used for radiobiological research

    International Nuclear Information System (INIS)

    Orthovoltage irradiators are routinely used to irradiate specimens and small animals in biological research. There are several reports on the characteristics of these units for small field irradiations. However, there is limited knowledge about use of these units for large fields, which are essential for emerging large-field irregular shape irradiations, namely total marrow irradiation used as a conditioning regimen for hematological malignancies. This work describes characterization of a self-contained Orthovoltage biological irradiator for large fields using measurements and Monte Carlo simulations that could be used to compute the dose for in vivo or in vitro studies for large-field irradiation using this or a similar unit. Percentage depth dose, profiles, scatter factors, and half-value layers were measured and analyzed. A Monte Carlo model of the unit was created and used to generate depth dose and profiles, as well as scatter factors. An ion chamber array was also used for profile measurements of flatness and symmetry. The output was determined according to AAPM Task Group 61 guidelines. The depth dose measurements compare well with published data for similar beams. The Monte Carlo–generated depth dose and profiles match our measured doses to within 2%. Scatter factor measurements indicate gradual variation of these factors with field size. Dose rate measured by placing the ion chamber atop the unit's steel plate or solid water indicate enhanced readings of 5 to 28% compared with those measured in air. The stability of output over a 5-year period is within 2% of the 5-year average. (author)

  15. On the origin and early evolution of biological catalysis and other studies on chemical evolution

    Science.gov (United States)

    Oro, J.; Lazcano, A.

    1991-01-01

    One of the lines of research in molecular evolution which we have developed for the past three years is related to the experimental and theoretical study of the origin and early evolution of biological catalysis. In an attempt to understand the nature of the first peptidic catalysts and coenzymes, we have achieved the non-enzymatic synthesis of the coenzymes ADPG, GDPG, and CDP-ethanolamine, under conditions considered to have been prevalent on the primitive Earth. We have also accomplished the prebiotic synthesis of histidine, as well as histidyl-histidine, and we have measured the enhancing effects of this catalytic dipeptide on the dephosphorylation of deoxyribonucleotide monophosphates, the hydrolysis of oligo A, and the oligomerization 2', 3' cAMP. We reviewed and further developed the hypothesis that RNA preceded double stranded DNA molecules as a reservoir of cellular genetic information. This led us to undertake the study of extant RNA polymerases in an attempt to discover vestigial sequences preserved from early Archean times. In addition, we continued our studies of on the chemical evolution of organic compounds in the solar system and beyond.

  16. Integrative Approach for Producing Hydrogen and Polyhydroxyalkanoate from Mixed Wastes of Biological Origin.

    Science.gov (United States)

    Patel, Sanjay K S; Lee, Jung-Kul; Kalia, Vipin C

    2016-09-01

    In this study, an integrative approach to produce biohydrogen (H2) and polyhydroxyalkanoates (PHA) from the wastes of biological origin was investigated. A defined set of mixed cultures was used for hydrolysis and the hydrolysates were used to produce H2. The effluent from H2 production stage was used for PHA production. Under batch culture, a maximum of 62 l H2/kg of pure potato peels (Total solid, TS 2 %, w/v) and 54 l H2/kg of mixed biowastes (MBW1) was recorded. Using effluent from the H2 production stage of biowaste mixture (MBW1), Bacillus cereus EGU43 could produce 195 mg PHA/l and 15.6 % (w/w). Further, supplementation of GM-2 medium (0.1×) and glucose (0.5 %) in H2 production stage effluents, resulted in significant improvements of up to 11 and 41.7 % of PHA contents, respectively. An improvement of 3.9- and 17-fold in PHA yields as compared to with and without integrative H2 production from the MBW1 has been recorded. This integrative approach seems to be a suitable process to improve the yields of H2 and PHA by mixing biowastes. PMID:27407293

  17. Chemical and Biological Characterization of Oleanane Triterpenoids from Soy

    Directory of Open Access Journals (Sweden)

    David G. Popovich

    2009-08-01

    Full Text Available Soyasaponins are a group of complex and structural diverse oleanane triterpenoids found in soy (Glycine max and other legumes. They are primarily classified into two main groups − group A and B − based on the attachment of sugar moieties at positions C-3 and C-22 of the ring structures. Group A soyasaponins are bidesmosidic, while group B soyasaponins are monodesmosidic. Group B soyasaponins are further classified into two subcategories known as 2,3-dihydro-2,5-dihydroxy-6 -methyl-4H-pyran-4-one (DDMP and non-DDMP conjugated molecules. The preparation and purification of soyasaponin molecules is complicated by the presence of bioactive soy isoflavones, which often overlap with soyasaponin in polarity and must removed from extracts before biological assessment. Soyasaponin extracts, aglycones of group A and B and individual group B soyasaponins such as soyasaponin I have been reported to posses specific bioactive properties, such as in vitro anti-cancer properties by modulating the cell cycle and inducing apoptosis. The isolation, chemical characterization and detection strategies by HPLC and HPLC-MS are reviewed, along with the reported bioactive effects of soyasaponin extracts and individual molecules in cultured cancer cell experiments.

  18. Characterization of Nanoparticle Aggregation in Biologically Relevant Fluids

    Science.gov (United States)

    McEnnis, Kathleen; Lahann, Joerg

    Nanoparticles (NPs) are often studied as drug delivery vehicles, but little is known about their behavior in blood once injected into animal models. If the NPs aggregate in blood, they will be shunted to the liver or spleen instead of reaching the intended target. The use of animals for these experiments is costly and raises ethical questions. Typically dynamic light scattering (DLS) is used to analyze aggregation behavior, but DLS cannot be used because the components of blood also scatter light. As an alternative, a method of analyzing NPs in biologically relevant fluids such as blood plasma has been developed using nanoparticle tracking analysis (NTA) with fluorescent filters. In this work, NTA was used to analyze the aggregation behavior of fluorescent polystyrene NPs with different surface modifications in blood plasma. It was expected that different surface chemistries on the particles will change the aggregation behavior. The effect of the surface modifications was investigated by quantifying the percentage of NPs in aggregates after addition to blood plasma. The use of this characterization method will allow for better understanding of particle behavior in the body, and potential problems, specifically aggregation, can be addressed before investing in in vivo studies.

  19. Chemical and biological characterization of urban particulate matter

    International Nuclear Information System (INIS)

    Airborne particulate matter has been collected on glass fiber filter by high volume sampling in the Goeteborg urban area. The samples were, after extraction with respect to organic components, tested for biological effect in the Salmonella mutagenicity assay, affinity to the cytosol TCDD receptor and toxicity towards a mammalian cell system and analysed chemically for selected polycyclic aromatic compounds. A series of samples collected simultaneously at a street level location and a rooftop site showed that most parameters associated with the organic compounds adsorbed to airborne particulate matter has similar concentrations at the two levels. The differences observed for the mutagenic effect in different strains and conditions showed that the rooftop samples had a different composition compared to the street samples indicating that atmospheric transformations have occurred. Chemical fractionation of representative samples showed that the distribution of mutagenic activity among different fractions is dissimilar to the distribution obtained in the fractionation of both gasoline and diesel engine exhaust particles. Partial least squares regression analysis showed qualitatively that diesel exhaust is a major source of airborne particulate mutagenic activity and source apportionment with chemical mass balance and multilinear regression corroborated this quantitatively. The multilinear regression analysis gave the result that the airborne activity in Salmonella TA90-S9 originated to 54±4% from diesel exhaust and to 26±3% from gasoline exhaust. The contribution is more equal for the activity measured with TA98+S9. The usefulness of short-term bioassays as an addition to chemical analysis of airborne particulate matter depends on whether only polycylic aromatic hydrocarbons (PAH) are major carcinogens, as has been suggested in the literature, or whether also other polycyclic aromatic compound (PAC) are of importance. (au)

  20. Novel microwave near-field sensors for material characterization, biology, and nanotechnology

    Science.gov (United States)

    Joffe, R.; Kamenetskii, E. O.; Shavit, R.

    2013-02-01

    The wide range of interesting electromagnetic behavior of contemporary materials requires that experimentalists working in this field master many diverse measurement techniques and have a broad understanding of condensed matter physics and biophysics. Measurement of the electromagnetic response of materials at microwave frequencies is important for both fundamental and practical reasons. In this paper, we propose a novel near-field microwave sensor with application to material characterization, biology, and nanotechnology. The sensor is based on a subwavelength ferrite-disk resonator with magnetic-dipolar-mode (MDM) oscillations. Strong energy concentration and unique topological structures of the near fields originated from the MDM resonators allow effective measuring material parameters in microwaves, both for ordinary structures and objects with chiral properties.

  1. Novel microwave near-field sensors for material characterization, biology, and nanotechnology

    CERN Document Server

    Joffe, R; Shavit, R

    2015-01-01

    The wide range of interesting electromagnetic behavior of contemporary materials requires that experimentalists working in this field master many diverse measurement techniques and have a broad understanding of condensed matter physics and biophysics. Measurement of the electromagnetic response of materials at microwave frequencies is important for both fundamental and practical reasons. In this paper, we propose a novel near-field microwave sensor with application to material characterization, biology, and nanotechnology. The sensor is based on a subwavelength ferrite-disk resonator with magnetic-dipolar-mode (MDM) oscillations. Strong energy concentration and unique topological structures of the near fields originated from the MDM resonators allow effective measuring material parameters in microwaves, both for ordinary structures and objects with chiral properties.

  2. Characterization of major recognition sequences for a herpes simplex virus type 1 origin-binding protein.

    OpenAIRE

    Koff, A; Tegtmeyer, P

    1988-01-01

    To investigate early initiation events in the replication of herpes simplex virus type 1, we analyzed interactions of proteins from infected cell extracts with the small origin of herpes simplex virus type 1 (oris1). Using the mobility shift assay, we detected two origin-specific binding interactions. We characterized the more prominent interaction on both strands of the DNA duplex with DNase I protection and methylation interference assays. Protein binding protects 17 bases of DNA on each st...

  3. Cyto-palynological, Biochemical and Molecular Characterization of Original and Induced Mutants of Garden Chrysanthemum

    International Nuclear Information System (INIS)

    A large number of new somatic flower color/type mutants have been evolved by induced mutations in different ornamental plants. Few reports are available on the systematic work being done on the comparative analysis of the original and mutant cultivars. This paper reports the result of comparative analysis on cyto-palynological, biochemical and molecular characters of original and mutant cultivars for a better understanding of the exact mechanism involved in the origin and evolution of flower color mutations. Cultivar identification and cultivar relatedness are important issues for horticultural breeders. Proper characterization and identification of new mutant cultivars is extremely important to protect plant breeder's rights for commercial exploitation. (author)

  4. Synthesis, Characterization and Biological Activities of Organotin (IV Methylcyclohexyldithiocarbamate Compounds

    Directory of Open Access Journals (Sweden)

    Normah Awang

    2011-01-01

    Full Text Available Problem statement: The growing interest in the chemistry of sulphur donor ligands are due to their encouraging anticancer, antibacterial and antifungal activities as well as their widespread industrial application. Dithiocarbamates belong to this class and much attention has been paid to them. Approach: Novel organotin compounds with the molecular formula RmSn[S2CN(CH3(C6H11]4-m (where m = 2, R = CH3, C2H5; m = 3, R = C6H5 have been synthesized using in situ method. These compounds were characterized by elemental analysis, IR, 1H and 13C NMR spectroscopy. Results: Elemental analysis revealed that all compounds were of good purity. Infrared spectra of the compounds showed that the thioureide ν(C-N band was in the region 1450-1500 cm−1. The unsplitting band of ν(C-S in the region 974-979 cm−1 indicated the bidentate nature of the chelated dithiocarbamato legends. The 13C NMR chemical shift of the carbon atom in the N-CS2 group appeared in the range of 196.29-199.82 ppm. Single crystal analysis from one of these compounds showed that the chelating mode of the dithiocarbamate groups was isobidentate. These compounds have been screened for antibacterial activity against four bacteria; Staphylococcus aureus, Salmonella typhimurium, Pseudomonas aeruginosa and Bacillus subtilis. Only one of these compounds shows promising results against S. aureus and S. typhi. Cytotoxicity screening on human leukemic promyelocyte HL-60 cells found that two of these compounds were very active with CD50 values of 0.87 and 0.18 µg mL−1. Conclusion: The studied compounds were found to have the potential in biological activity especially in cytotoxicity where this possibly can be used for clinical trials after further research.

  5. Biochemical identification and biological origin of key odor components in livestock waste.

    Science.gov (United States)

    Mackie, R I; Stroot, P G; Varel, V H

    1998-05-01

    Animal production results in conversion of feeds into valuable products such as meat, milk, eggs, and wool as well as into unavoidable and less desirable waste products. Intensification of animal numbers and increasing urbanization has resulted in considerable attention to odorous gases produced from animal wastes. It is clear that animal manure was, and still is, a valuable resource. However, it may be a major obstacle to future development of the animal industry if its impact on the environment is not properly controlled. Poor odor prevention and control from animal wastes is related to a lack of knowledge of the fundamental nature of odor and its production by farm animals. Odor, like noise, is a nuisance or disturbance and there is no universally accepted definition of an objectionable odor. Thus, regulation and control of odors in the environment is difficult because of the technical difficulties of defining odor limits and their measurement and evaluation. A variety of direct (sensory) and indirect (analytical instruments) methods for measuring odor intensity and determination of individual or key odor components are discussed. The biological origins of the four principal classes of odor compounds, namely branched- and straight-chain VFA, ammonia and volatile amines, indoles and phenols, and the volatile sulfur-containing compounds, are reviewed. Because more than 50% of N from animals is excreted as urea, one strategy to conserve N in waste is to inhibit the urease enzyme that converts urea to ammonia. Laboratory studies to evaluate di- and triamide compounds to control urea hydrolysis in slurries of cattle and swine wastes are presented. Finally, a brief overview of various intervention strategies is provided. Multiple combinations of nutritional management, housing systems, treatment options as well as storage and disposal of animal wastes will be required to reduce environmental pollution and provide for long-term sustainable growth. PMID:9621939

  6. Ecological engineering to control bioclogging: an original field study coupling infiltration and biological measurements

    Science.gov (United States)

    Gette-bouvarot, Morgane; Mermillod-Blondin, Florian; Lassabatere, Laurent; Lemoine, Damien; Delolme, Cécile; Volatier, Laurence

    2014-05-01

    Infiltration systems are increasingly used in urban areas for several purposes such as flood prevention and groundwater recharge. However, their functioning is often impacted by clogging that leads to decreases in hydraulic and water treatment performances. These systems are commonly built with sand as infiltration medium, a media subject to rapid clogging by the combined and overlapping processes of pore occlusion by fine particles and biofilm development. In a previous study, we pointed out that the phototrophic component of biofilms developed at the surface layer of infiltration systems (algae, cyanobacteria) could reduce by up to 60-fold the saturated hydraulic conductivity. Consequently, it appears crucial to control biofilm growth to maintain porous infiltration media performances. The present study aimed to test the influence of biotic (addition of animals or macrophytes) and abiotic (light reduction) treatments on biofilm development and associated hydraulic properties in an infiltration device dedicated to aquifer recharge with river water in Lyon Area (France). Twenty-five benthic enclosures were used to test 5 "treatments" on non-manipulated surface layer under field conditions. Three biotic treatments consisted in the introduction of: (i) an invertebrate acting as algae grazer (Viviparus viviparus), (ii) an invertebrate that digs galleries in sediments (Tubifex tubifex), and (iii) a macrophyte that could inhibit benthic biofilm by allelopathic activity (Vallisneria spiralis L). The fourth treatment was designed to simulate shading. The last "treatment" was a control which monitored the evolution of the system during the experiment without manipulation (addition of macro-organisms or shading). Each treatment was replicated five times. The experiment was conducted for 6 weeks, and sampling of the surface layer (0-1 cm) was carried out in each enclosure at the beginning (t0) and the end (tf). We coupled biological characterizations (organic matter, algal

  7. (Re-)Construction, characterization and modeling of genomes for synthetic biology

    OpenAIRE

    Suarez Diez, Maria; Lam, Carolyn; Leprince, Audrey; Martins Dos Santos, Vitor

    2009-01-01

    Abstract Synthetic biology is the rational (re-)design of biological systems with useful properties. In its engineering perspective, it aims at transforming biotechnology into a true engineering discipline with the corresponding reliabilities and accuracies in design. Under this view, the building blocks of complex systems are well-characterized biological modules, designed and optimized for specific functions that can be assembled into circuits to perform complex biological funct...

  8. Terpenoid Plant Metabolites - Structural Characterization and Biological Importance

    OpenAIRE

    Maldonado, Eliana

    2014-01-01

    In response to the challenges of their local environments, organisms produce of a large number of chemical diverse compounds with complex stereochemistry and reactive functional groups. These characteristics enable them to interact and bind specifically to biological target molecules and exert various biological activities, and have assured that Natural products continues to be an important source of bioactive compounds, which, for example, facilitate the search for new lead structures that c...

  9. Characterization of Haemolysin of Staphylococcus aureus Isolated from Food of Animal Origin

    Directory of Open Access Journals (Sweden)

    Dwi Ariyanti

    2015-11-01

    Full Text Available Staphylococcus aureus is an important pathogen bacteria causing food poisoning and various infection in animals and humans. Haemolysin is one of the virulence factors of Staphylococcus aureus. The aims of the research were to characterize haemolysins of Staphylococcus aureus isolated from various food of animal origin, phenotypic- and genotypically. In the present study, eleven Staphylococcus aureus isolated from various food of animal origins from traditional markets and supermarkets in Yogyakarta, Sidoarjo, Jakarta, and Bandung were characterized for haemolysin, pheno- and genotypically. Characterization of haemolysin phenotypically based on haemolysis pattern of Staphylococcus aureus on sheep blood agar plate. Genes encoding hemolysin were amplified with specific primers by using polymerase chain reaction (PCR technique. The results of the studies showed that Staphylococcus aureus on sheep blood agar plates revealed an alpha haemolysis pattern (18,18%, beta haemolysis (27,27% and gamma haemolysis (54,55%. Based on amplification of the gene encoding haemolysin of Staphylococcus aureus with specific primers showed hla genes (81,81%, and hla combined with hlb genes (18,18%. The amplification of gene hla and hlb had a single amplicon with a size of approximately 534 bp and 833 bp, respectively. The haemolysin characteristics of Staphylococcus aureus from various food of animal origin could be used as important information to control staphylococcal food poisoning.Keywords : Staphylococcus aureus, haemolysin, PCR, food of animal origins

  10. The origin of biological macromolecules on the earth. The hypothesis of inorganic template

    Science.gov (United States)

    Lu, T. S.

    1977-01-01

    Studies about the origin of life are reviewed. The nonrandom organization of organelles is discussed from a structural and functional point of view. After postulating that the origin of biomacromolecules was not a random event, the paper develops the hypothesis that polypeptides and polynucleotides were formed on an inorganic template. Only information-containing structures can pass natural selection and develop through evolution.

  11. Characterization of biological ice nuclei from a lichen.

    OpenAIRE

    Kieft, T. L.; Ruscetti, T

    1990-01-01

    Biological ice nuclei (active at approximately -4 degrees C) were extracted from cells of the lichen Rhizoplaca chrysoleuca by sonication. Sensitivity to proteases, guanidine hydrochloride, and urea showed these nuclei to be proteinaceous. The nuclei were relatively heat stable, active from pH 1.5 to 12, and active without lipids, thereby demonstrating significant differences from bacterial ice nuclei.

  12. Biological and phylogenetic characterization of a genotype VII Newcastle disease virus from Venezuela: Efficacy of vaccination

    Science.gov (United States)

    Here we describe the characterization a virulent genotype VII Newcastle disease virus (NDV) from Venezuela and evaluate the efficacy of heterologous genotype commercial vaccination under field and controlled rearing conditions. Biological pathotyping and molecular analysis were applied. Results sh...

  13. Electrical Characterization of Biological Elements by Atomic Force Microscopy

    OpenAIRE

    Casuso Páramo, Ignacio

    2008-01-01

    [eng]The assessment of the electrical properties of biomolecules at the nanoscale becomes necessary for gathering previous basic knowledge and for the control of the biosensor fabrication. I developed instrumentation, protocols, and theoretical frameworks for the nanoscale electrical characterization of biomolecules by AFM. Two novel types of AFM electrical characterizations were developed: electron transport through the biomolecules and dielectric polarization of the biomolecules (each one r...

  14. On the possibility of biologically active fenole substances forming during irradiation of vegetable origin products

    International Nuclear Information System (INIS)

    The purpose of this study was to find out whether biologically active substances of phenol nature can form upon irradiation of fresh fruits and vegetables with doses of 200-300 Krad, to ascertain the stability of these substances during storage and processing, and to see whether they display cytostatic effects. The results of the study led to modifications and improvements in the methods used to study biologically active substances of phenol nature in fresh fruits irradiated with 200-300 krad. The total amount of phenolic compounds was found to be somewhat increased upon their extraction with cold ethanol. Of the substances detected in extracts from red tomatoes, the contens of chlorogenic acid, caffeic acid, and naranguenine were appreciably increased. Neither chemical methods nor bioassays revealed in irradiated juices and fruits any biologically active substances affecting the living organism. (E.T.)

  15. Phenolic Compounds Characterization and Biological Activities of Citrus aurantium Bloom

    OpenAIRE

    Armin Oskoueian; Jaafar, Hawa Z. E.; Rudi Hendra; Ehsan Oskoueian; Ehsan Karimi

    2012-01-01

    Citrus plants are known to possess beneficial biological activities for human health. In addition, ethnopharmacological application of plants is a good tool to explore their bioactivities and active compounds. This research was carried out to evaluate the phenolic and flavonoid analysis, antioxidant properties, anti inflammatory and anti cancer activity of Citrus aurantium bloom. The total phenolics and flavonoids results revealed that methanolic extract contained high total phenolics and fla...

  16. Secondary metabolites in grasses: characterization and biological activity

    OpenAIRE

    Aldo Tava

    2007-01-01

    In a series of studies dealing on the nutritional value of forage species, more attention was focussed on several compounds, named secondary metabolites, that are important in determining nutritional characteristics. Secondary metabolites are compounds detected in the green materials in low concentration compared to primary metabolites (proteins, sugars, lipids, fibers), but of fundamental importance for the plant physiology. The possess several biological activities and this contribute to th...

  17. The search for life's origins: Progress and future directions in planetary biology and chemical evolution

    Science.gov (United States)

    1990-01-01

    The current state is reviewed of the study of chemical evolution and planetary biology and the probable future is discussed of the field, at least for the near term. To this end, the report lists the goals and objectives of future research and makes detailed, comprehensive recommendations for accomplishing them, emphasizing those issues that were inadequately discussed in earlier Space Studies Board reports.

  18. The Origin and Evolution of Life in Pakistani High School Biology

    Science.gov (United States)

    Asghar, Anila; Wiles, Jason R.; Alters, Brian

    2010-01-01

    This study seeks to inform science education practitioners and researchers in the West about apparent attempts to reconcile science and religion in Pakistan's public school curriculum. We analysed the national high school science curriculum and biology textbooks (English) used in the Government schools in Pakistan, where Islamic faith is the…

  19. Characterization of markers of botanical origin and other compounds extracted from unifloral honeys.

    Science.gov (United States)

    Schievano, Elisabetta; Morelato, Elisa; Facchin, Chiara; Mammi, Stefano

    2013-02-27

    The possibility of tracing the botanical and geographical origin of products such as honey has become more important because of market globalization. As a consequence, numerous analytical methods have been applied to the determination of honey authenticity. The scope of the present work is to chromatographically purify and characterize 23 compounds from organic extracts of unifloral (chestnut, linden, orange, acacia, eucalyptus, honeydew) and polyfloral honeys. Of these compounds, 17 were identified as specific markers and were used for botanical discrimination in a previous study based on multivariate statistical analysis of proton nuclear magnetic resonance ((1)H NMR) data. Together with the botanical markers, 6 other substances were isolated and characterized using NMR and mass spectrometry. These phytochemicals belong to several classes, that is, terpenes, organic acids, flavonoids, and others. For the first time, a diacylglyceryl ether and 5 other compounds present in different types of honey were identified and characterized. PMID:23360363

  20. CHEMICAL AND BIOLOGICAL CHARACTERIZATION OF LEACHATES FROM COAL SOLID WASTES

    Science.gov (United States)

    The report gives results of the chemical and mineralogical characterization of coal solid wastes. The wastes included three Lurgi gasification ashes, mineral residues from the SRC-1 and H-Coal liquefaction processes, two chars, two coal-cleaning residues, and a fly-ash-and-water-...

  1. Some physical problems in biology: Aspects of the origin and structure of the first cell

    International Nuclear Information System (INIS)

    A review is presented within the framework of the theory of evolution, after it has been extrapolated from the population level to the cellular and molecular levels. From Darwin's seminal and persuasive insight - the theory of common descent - we assume, with him, that ''probably all the organic beings which have ever lived on this earth have descended from some one primordial form, into which life was first breathed''. We are now aware that this primordial cell may have been a protocyanobacterium, but it has often been called 'a last universal ancestor', a 'breakthrough organism', or a 'progenote', a term introduced by Woese which has gained wide acceptance. Strictly speaking, in the 'intermediate period', ranging from the first living cell to the progenote, life may have evolved in the absence of significant diversity, effectively as a single phylum, incorporating organisms whose genetic systems were already based on DNA. Earlier still, prior to the encapsulation of nucleic acids in microspheres, evolution may already have been at work on RNA molecules (the 'RNA world'). This takes our discussion into the period of chemical evolution, a concept first put forward by Oparin, whose principal merit is to have formulated the underlying problem in clear scientific terms. This review does not attempt to be comprehensive. It is mainly devoted to the discussion of certain concepts that may have played a relevant role in the pathway that led to the origin and evolution of the progenote. We do not dwell on the main events of the intermediate period. The topics that we have chosen to include are: the origin of chirality of protein amino acids, the origin of translation, and the origin of the genome. We conclude with some comments on one further aspect of the evolutionary process - the development of biodiversity - by considering the origin of the first eukaryotic cell, an event which, according to the fossil record, may have preceded the evolutionary radiation in the early

  2. Some physical problems in biology: Aspects of the origin and structure of the first cell

    International Nuclear Information System (INIS)

    A review is presented within the framework of the theory of evolution, after it has been extrapolated from the population level to the cellular and molecular levels. From Darwin's seminal and persuasive insight - the theory of common descent - we assume, with him, that ''probably all the organic beings which have ever lived on this earth have descended from some one primordial form, into which life was first breathed''. We are now aware that his primordial cell may have been a protocyanobacterium, but it has often been called 'a last universal ancestor', a 'breakthrough organism', or a 'progenote', a term introduced by Woese which has gained wide acceptance. Strictly speaking, in the 'intermediate period', ranging from the first living cell to the progenote, life may have evolved in the absence of significant diversity, effectively as a single phylum, incorporating organisms whose genetic systems were already based on DNA. Earlier still, prior to the encapsulation of nucleic acids in microspheres, evolution may already have been at work on RNA molecules (the 'RNA world'). This takes our discussion into the period of chemical evolution, a concept first put forward by Oparin, whose principal merit is to have formulated the underlying problem in clear scientific terms. This review does not attempt to be comprehensive. It is mainly devoted to the discussion of certain concepts that may have played a relevant role in the pathway that led to the origin and evolution of the progenote. We do not dwell on the main events of the intermediate period. The topic that we have chosen to include are: the origin of chirality of protein amino acids, the origin of translation, and the origin of the genome. We conclude with some comments on one further aspect of the evolutionary process - the development of biodiversity - by considering the origin of the first eukaryotic cell, an event which, according to the fossil record, may have preceded the evolutionary radiation in the early

  3. Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin

    DEFF Research Database (Denmark)

    Vikeså, Jonas; Møller, Anne Kirstine H; Kaczkowski, Bogumil;

    2015-01-01

    genome wide transcriptome analysis, Linear Discriminant Analysis (LDA) and Quadratic Discriminant Analysis (QDA), we defined the putative origins of a large series of CUP and how closely related a particular CUP was to corresponding metastases of known origin. LDA predictions were subsequently used to...

  4. Networking Biology: The Origins of Sequence-Sharing Practices in Genomics.

    Science.gov (United States)

    Stevens, Hallam

    2015-10-01

    The wide sharing of biological data, especially nucleotide sequences, is now considered to be a key feature of genomics. Historians and sociologists have attempted to account for the rise of this sharing by pointing to precedents in model organism communities and in natural history. This article supplements these approaches by examining the role that electronic networking technologies played in generating the specific forms of sharing that emerged in genomics. The links between early computer users at the Stanford Artificial Intelligence Laboratory in the 1960s, biologists using local computer networks in the 1970s, and GenBank in the 1980s, show how networking technologies carried particular practices of communication, circulation, and data distribution from computing into biology. In particular, networking practices helped to transform sequences themselves into objects that had value as a community resource. PMID:26593711

  5. Chemical characterization and biological activity of Chaga (Inonotus obliquus), a medicinal “mushroom”

    OpenAIRE

    Glamočlija, Jasmina; Ćirić, Ana; Nikolić, Miloš; Fernandes, Ângela; Barros, Lillian; Ricardo C. Calhelha; Ferreira, Isabel C.F.R.; Soković, Marina; Van Griensven, Leo J. L. D.

    2015-01-01

    Chemical composition and biological properties of aqueous and ethanolic extracts of Inonotus obliquus (Pers.:Fr.) Pilat from different origins, i.e. of Finland, Russia, and Thailand, were studied. Concerning biological activity, antimicrobial, antiqourum, antioxidative, and antitumor and cytotoxic effects were tested. Oxalic acid was found as the main organic acid, with the highest amount in Russian aqueous extract. Gallic, protocatechuic and p-hydroxybenzoic acids were detected in all sample...

  6. Common Origins of Diverse Misconceptions: Cognitive Principles and the Development of Biology Thinking

    OpenAIRE

    Coley, John D.; Tanner, Kimberly D.

    2012-01-01

    Many ideas in the biological sciences seem especially difficult to understand, learn, and teach successfully. Our goal in this feature is to explore how these difficulties may stem not from the complexity or opacity of the concepts themselves, but from the fact that they may clash with informal, intuitive, and deeply held ways of understanding the world that have been studied for decades by psychologists. We give a brief overview of the field of developmental cognitive psychology. Then, in ea...

  7. Physicochemical and Biological Characterization of a Biosimilar Trastuzumab

    Directory of Open Access Journals (Sweden)

    Carlos A. López-Morales

    2015-01-01

    Full Text Available According to the World Health Organization, the incidence of malignant neoplasms and endocrine, blood, and immune disorders will increase in the upcoming decades along with the demand of affordable treatments. In response to this need, the development of biosimilar drugs is increasing worldwide. The approval of biosimilars relies on the compliance with international guidelines, starting with the demonstration of similarity in their physicochemical and functional properties against the reference product. Subsequent clinical studies are performed to demonstrate similar pharmacological behavior and to diminish the uncertainty related to their safety and efficacy. Herein we present a comparability exercise between a biosimilar trastuzumab and its reference product, by using a hierarchical strategy with an orthogonal approach, to assess the physicochemical and biological attributes with potential impact on its pharmacokinetics, pharmacodynamics, and immunogenicity. Our results showed that the high degree of similarity in the physicochemical attributes of the biosimilar trastuzumab with respect to the reference product resulted in comparable biological activity, demonstrating that a controlled process is able to provide consistently the expected product. These results also constitute the basis for the design of subsequent delimited pharmacological studies, as they diminish the uncertainty of exhibiting different profiles.

  8. Transport and characterization of ambient biological aerosol near Laurel, MD

    Directory of Open Access Journals (Sweden)

    J. L. Santarpia

    2010-09-01

    Full Text Available Bacterial aerosol have been observed and studied in the ambient environment since the mid nineteenth century. These studies have sought to provide a better understanding of the diversity, variability and factors that control the biological aerosol population. In this study, we show comparisons between diversity of culturable bacteria and fungi, using culture and clinical biochemical tests, and 16S rRNA diversity using Affymetrix PhyloChips. Comparing the culturable fraction and surveying the total 16S rRNA of each sample provides a comprehensive look at the bacterial population studied and allows comparison with previous studies. Thirty-six hour back-trajectories of the air parcels sampled, over the two day period beginning 4 November 2008, provide information on the sources of aerosol sampled on the campus of Johns Hopkins University Applied Physics Laboratory in Laurel, MD. This study indicates that back-trajectory modeling of air parcels may provide insights into the observed diversity of biological aerosol.

  9. The role of biological processes in the synthesis of plant origin of magnetic nano particles

    International Nuclear Information System (INIS)

    Full text:In recent years, in various spheres, particular in the use of medicine and the use of iron oxide (magnetit-Fe3O4, magemit Fe2O3) needed in the diagnostics the problems of synthesis of magnetic nano particles are in the centre of the focus of many scholars.The implementation of biological methods of synthesis of magnetic nano particles, it is very urgent clarification of the role of biological processes synthesis of nano particles. What is the role of biological processes in the synthesis of magnetic nano particles plant in order to clarify the model of the wheat (Triticum vulgare) and pea (Cicer arietinum L.) plants and seeds have been used. The study of the effects of radiation on organisms of different types of cell and chromosome levels of various radiation effects and radiation to understand the nature of the influence of the nature of the forecast allows you to substantiate. Chromosome aberation was has been taken in the cells of pea sprout exposures radiation rays as a criterion of cytogenetic effects. EPR studies of the pea and wheat seeds (control and radiations) were used. In accordance with the results of EPR experiments were carried out with pea seeds.

  10. Measurement and characterization of the biological fraction of fine particles - BIOFINE

    Energy Technology Data Exchange (ETDEWEB)

    Rintala, H.; Toivola, M.; Hyvaerinen, A. [National Public Health Institute, Helsinki (Finland)

    2006-10-15

    Fine particles are mainly generated in burning processes and traffic. However, a part of the airborne particulate matter is of biological origin. Although many health aspects are associated with bioaerosols, their composition and behavior has not yet been well studied. Aerosol particle concentration in indoor air is affected by outdoor air. Simultaneous measuring of both indoor and outdoor air can be used to exclude the outdoor sources and to define the indoor sources of fine particles and bioaerosols. The aims of the study were to investigate whether microbial damage of a building generates fine particles measurable with particle counting methods and to characterize the microbial fraction of the airborne fine particulate matter qualitatively and quantitatively with modern molecular biological, chemical and immunological techniques. The investigations were done in pairs of buildings; one building of the pair having moisture and microbial damage and reported building-related symptoms of workers. The reference building was an age- and building frame- matched control with no signs of moisture or microbial damage or known health complaints. In these building pairs, fine particles and microbial matter in indoor and outdoor air were measured. The 3-800 nm particles were measured using DMPS (differential mobility particle sizer) and the >0,3 {mu}m fraction with Climet CI-500 particle counter. Samples were taken from indoor and outdoor air, and settled dust. The composition of the microbial flora in these samples was be determined by large scale sequencing, quantitative PCR, chemical markers such as ergosterol and lipid biomarkers, such as PLFAs. The immunotoxic potential of the samples was determined using cell cultures. (orig.)

  11. Data on polyphenols and biological activity analyses of an Andean tomato collection and their relationships with tomato traits and geographical origin.

    Science.gov (United States)

    Di Paola Naranjo, Romina D; Otaiza, Santiago; Saragusti, Alejandra C; Baroni, Veronica; Carranza, A V; Peralta, Iris E; Valle, Estela M; Carrari, Fernando; Asis, Ramón

    2016-06-01

    Data provide information about a tomato collection composed of accessions from the Andean Valley, commercial accessions and wild species. Antioxidant metabolites were measured in mature fruits of this collection, and their biological activities were assessed by both in vitro and in vivo methods. In this work, the parameters used to identify and quantify polyphenols compounds in tomato fruit by liquid chromatography coupled to diode array detector and quadrupole time of flight mass spectrometer are described. Moreover, data supporting a procedure to characterize the properties of tomato fruits to revert death by thermal stress in Caenorhabditis elegans are explained in detail. Lastly, principal component analysis and hierarchical cluster analysis of metabolites composition, antioxidant activities (in vivo and in vitro), tomato traits and geographical origin of the tomatoes collection are shown. The data presented here are related to the research article entitled "Hydrophilic antioxidants from Andean Tomato Landraces assessed by their bioactivities in vitro and in vivo" [1]. PMID:27222844

  12. Synthesis, characterization and biological activity of uranyl thiosemicarbazone complexes

    International Nuclear Information System (INIS)

    A new thiosemicarbazone namely phenacyl thioacetic acid thiosemicarbazone was synthesized and its UO22+ complexes were prepared. The synthesized ligand and complexes were characterized by elemental analyses, spectral (IR, 1H NMR and Mass) studies. In all complexes the ligand coordinates through carboxylic oxygen, azomethine nitrogen and thiolate sulfur. Antimicrobial screening of the free ligand and its complexes showed that, the free ligand and metal complexes possess antimicrobial activities towards two types of bacteria and two types of fungi. (author)

  13. Genetics and biology of human ovarian teratomas. I. Cytogenetic analysis and mechanism of origin.

    OpenAIRE

    Surti, U; Hoffner, L; Chakravarti, A; Ferrell, R E

    1990-01-01

    One hundred and two benign, mature ovarian teratomas and two immature, malignant teratomas were karyotyped and scored for centromeric heteromorphisms as part of an ongoing project to determine the chromosomal karyotype and the genetic origin of ovarian teratomas and to assess their utility for gene-centromere mapping. Karyotypic analysis of the benign cases revealed 95 46,XX teratomas and 7 chromosomally abnormal teratomas (47,XXX, 47,XX,+8 [two cases], 47,XX,+15, 48,XX,+7,+12 91,XXXX,-13 [mo...

  14. Reproductive biology of the biofuel plant Jatropha curcas in its center of origin

    OpenAIRE

    Rincón-Rabanales, Manuel; Vargas-López, Laura I.; Adriano-Anaya, Lourdes; Vázquez-Ovando, Alfredo; Salvador-Figueroa, Miguel; Ovando-Medina, Isidro

    2016-01-01

    In this work, we studied the main characteristics of flowering, reproductive system and diversity of pollinators for the biofuel plant Jatropha curcas (L.) in a site of tropical southeastern Mexico, within its center of origin. The plants were monoecious with inflorescences of unisexual flowers. The male flowers produced from 3062–5016 pollen grains (266–647 per anther). The plants produced fruits with both geitonogamy and xenogamy, although insect pollination significantly increased the numb...

  15. Molecular characterization of multidrug-resistant Shigella spp. of food origin.

    Science.gov (United States)

    Ahmed, Ashraf M; Shimamoto, Tadashi

    2015-02-01

    Shigella spp. are the causative agents of food-borne shigellosis, an acute enteric infection. The emergence of multidrug-resistant clinical isolates of Shigella presents an increasing challenge for clinicians in the treatment of shigellosis. Several studies worldwide have characterized the molecular basis of antibiotic resistance in clinical Shigella isolates of human origin, however, to date, no such characterization has been reported for Shigella spp. of food origin. In this study, we characterized the genetic basis of multidrug resistance in Shigella spp. isolated from 1600 food samples (800 meat products and 800 dairy products) collected from different street venders, butchers, retail markets, and slaughterhouses in Egypt. Twenty-four out of 27 Shigella isolates (88.9%) showed multidrug resistance phenotypes to at least three classes of antimicrobials. The multidrug-resistant Shigella spp. were as follows: Shigella flexneri (66.7%), Shigella sonnei (18.5%), and Shigella dysenteriae (3.7%). The highest resistance was to streptomycin (100.0%), then to kanamycin (95.8%), nalidixic acid (95.8%), tetracycline (95.8%), spectinomycin (93.6%), ampicillin (87.5%), and sulfamethoxazole/trimethoprim (87.5%). PCR and DNA sequencing were used to screen and characterize integrons and antibiotic resistance genes. Our results indicated that 11.1% and 74.1% of isolates were positive for class 1 and class 2 integrons, respectively. Beta-lactamase-encoding genes were identified in 77.8% of isolates, and plasmid-mediated quinolone resistance genes were identified in 44.4% of isolates. These data provide useful information to better understand the molecular basis of antimicrobial resistance in Shigella spp. To the best of our knowledge, this is the first report of the molecular characterization of antibiotic resistance in Shigella spp. isolated from food. PMID:25485847

  16. Synthesis, characterization and biological evaluation of m-phenetidine derivatives

    International Nuclear Information System (INIS)

    The synthesis of compounds bearing sulfamoyl group and amide linkage is pharmacologically important due to their splendid biological activities. In the presented research work N-(3-ethoxyphenyl)-4-methylbenzenesulfonamide (3) was synthesized by the coupling of m-phenetidine (1) with 4-methylbenzenesulfonyl chloride (2) in basic aqueous media. Compound 3 on reaction with 2-bromo-N-aryl/aralkyl substituted acetamides, 5a-d, synthesized the products, 6a-d. The bromination of compound 3 yielded N-(2,4-dibromo-5-ethoxyphenyl)-4-methylbenzenesulfonamide (7) which on further treatment with different electrophiles, 8a-d yielded compound 9a-d. Enzyme inhibition activities of all the synthesized compounds were evaluated against acetylcholinesterase, butyrylcholinesterase, lipoxygenase, urease, chymotrypsin and tyrosinase enzymes; and found to be the most prominent inhibitor of tyrosinase enzyme. (author)

  17. The Characterization of Biological Rhythms in Mild Cognitive Impairment

    Directory of Open Access Journals (Sweden)

    Elisabet Ortiz-Tudela

    2014-01-01

    Full Text Available Introduction. Patients with dementia, especially Alzheimer’s disease, present several circadian impairments related to an accelerated perturbation of their biological clock that is caused by the illness itself and not merely age-related. Thus, the objective of this work was to elucidate whether these circadian system alterations were already present in patients with mild cognitive impairment (MCI, as compared to healthy age-matched subjects. Methods. 40 subjects (21 patients diagnosed with MCI, 74.1 ± 1.5 y.o., and 19 healthy subjects, 71.7 ± 1.4 y.o. were subjected to ambulatory monitoring, recording wrist skin temperature, motor activity, body position, and the integrated variable TAP (including temperature, activity, and position for one week. Nonparametrical analyses were then applied. Results. MCI patients exhibited a significant phase advance with respect to the healthy group for the following phase markers: temperature M5 (mean ± SEM: 04:20 ± 00:21 versus 02:52 ± 00:21 and L10 (14:35 ± 00:27 versus 13:24 ± 00:16 and TAP L5 (04:18 ± 00:14 versus 02:55 ± 00:30 and M10 (14:30 ± 00:18 versus 13:28 ± 00:23. Conclusions. These results suggest that significant advances in the biological clock begin to occur in MCI patients, evidenced by an accelerated aging of the circadian clock, as compared to a healthy population of the same age.

  18. Characterizing the origins of bottled water on the South Korean market using chemical and isotopic compositions

    International Nuclear Information System (INIS)

    We analyzed the major elements and stable isotopes of oxygen, hydrogen, and carbon (dissolved inorganic carbon: DIC) in various types of bottled water (domestic and foreign) commercially available in South Korea to classify the water types and to identify their origins. Only marine waters and some sparkling waters could be discriminated by their physicochemical compositions. Oxygen and hydrogen isotopes made marine waters more distinguishable from other water types. The determination of the carbon isotope composition of DIC was clearly useful for distinguishing between naturally and artificially sparkling waters. In addition, statistical analysis also appeared to aid in the discrimination of bottled water types. Our results indicate that a method that combines chemical and stable isotope composition analysis with statistical analysis is the most useful for discriminating water types and characterizing the origins of bottled water

  19. Synthesis, characterization and biological evaluation of thiazolopyrimidine derivatives

    Indian Academy of Sciences (India)

    H Nagarajaiah; I M Khazi; Noor Shahina Begum

    2012-07-01

    Different substituted diesters of thiazolopyrimidine were prepared by the treatment of 3,4 dihydropyrimidine2-thione with -haloesters using ethanol under reflux condition affording 71-85% yield. IR, 1HNMR, 13CNMR and elemental analyses were used for the characterization of these compounds. The crystal and molecular structure of one of the product, 5-phenyl-3,7-dimethyl-5H-thiazolo[3,2-a]pyrimidine-2,6-dicarboxylic acid diethyl ester (3e) was verified by single crystal X-ray diffraction method. The antimicrobial activity was evaluated against four bacterial strains and one fungal species. Few of the derivatives exhibited antibacterial and antifungal activities.

  20. Physical characterization of ultrashort laser pulse drilling of biological tissue

    Energy Technology Data Exchange (ETDEWEB)

    Feit, M.D.; Rubenchik, A.M.; Kim, B.M.; Da Silva, L.D.; Stuart, B.C.; Perry, M.D.

    1997-07-21

    Ultrashort laser pulse ablation removes material with low energy fluence required and minimal collateral damage. The ultimate usefulness of this technology for biomedical applications depends, in part, on characterization of the physical conditions attained and determination of the zone of shockwave and heat affected material in particular tissues. Detailed numerical modeling of the relevant physics (deposition, plasma formation, shockwave generation and propagation, thermal conduction) are providing this information. A wide range of time scales is involved, ranging from picosecond for energy deposition and peak pressure and temperature, to nanosecond for development of shockwave, to microsecond for macroscopic thermophysical response.

  1. Early South Americans Cranial Morphological Variation and the Origin of American Biological Diversity.

    Directory of Open Access Journals (Sweden)

    Mark Hubbe

    Full Text Available Recent South Americans have been described as presenting high regional cranial morphological diversity when compared to other regions of the world. This high diversity is in accordance with linguistic and some of the molecular data currently available for the continent, but the origin of this diversity has not been satisfactorily explained yet. Here we explore if this high morphological variation was already present among early groups in South America, in order to refine our knowledge about the timing and origins of the modern morphological diversity. Between-group (Fst estimates and within-group variances (trace of within-group covariance matrix of the only two early American population samples available to date (Lagoa Santa and Sabana de Bogotá were estimated based on linear craniometric measurements and compared to modern human cranial series representing six regions of the world, including the Americas. The results show that early Americans present moderate within-group diversity, falling well within the range of modern human groups, despite representing almost three thousand years of human occupation. The between-group variance apportionment is very low between early Americans, but is high among recent South American groups, who show values similar to the ones observed on a global scale. Although limited to only two early South American series, these results suggest that the high morphological diversity of native South Americans was not present among the first human groups arriving in the continent and must have originated during the Middle Holocene, possibly due to the arrival of new morphological diversity coming from Asia during the Holocene.

  2. Metabolic disposition and biological significance of simple phenols of dietary origin: hydroxytyrosol and tyrosol.

    Science.gov (United States)

    Rodríguez-Morató, Jose; Boronat, Anna; Kotronoulas, Aristotelis; Pujadas, Mitona; Pastor, Antoni; Olesti, Eulalia; Pérez-Mañá, Clara; Khymenets, Olha; Fitó, Montserrat; Farré, Magí; de la Torre, Rafael

    2016-05-01

    Hydroxytyrosol and tyrosol are dietary phenolic compounds present in virgin olive oil and wine. Both compounds are also endogenously synthesized in our body as byproducts of dopamine and tyramine metabolisms, respectively. Over the last decades, research into hydroxytyrosol and tyrosol has experienced an increasing interest due to the role that these compounds may play in the prevention of certain pathologies (e.g. cardiovascular, metabolic, neurodegenerative diseases and cancer). The translation of promising in vitro and in vivo biological effects from preclinical studies to the context of human disease prevention initially depends on whether the dose ingested becomes available at the site of action. In this regard, information regarding the bioavailability and metabolic disposition of hydroxytyrosol and tyrosol is of most importance to evaluate the impact they may have on human health. In this review, we discuss and summarize the state of the art of the scientific evidence regarding the processes of absorption, distribution, metabolism and excretion of both hydroxytyrosol and tyrosol. We also examine the impact of these compounds and their metabolites on biological activity in terms of beneficial health effects. Finally, we evaluate the different analytical approaches that have been developed to measure the plasma and urinary levels of hydroxytyrosol, tyrosol and their metabolites. PMID:27186796

  3. Pyridinoacridine alkaloids of marine origin: NMR and MS spectral data, synthesis, biosynthesis and biological activity

    Directory of Open Access Journals (Sweden)

    Louis P. Sandjo

    2015-09-01

    Full Text Available This review focuses on pyridoacridine-related metabolites as one biologically interesting group of alkaloids identified from marine sources. They are produced by marine sponges, ascidians and tunicates, and they are structurally comprised of four to eight fused rings including heterocycles. Acridine, acridone, dihydroacridine, and quinolone cores are features regularly found in these alkaloid skeletons. The lack of hydrogen atoms next to quaternary carbon atoms for two or three rings makes the chemical shift assignment a difficult task. In this regard, one of the aims of this review is the compilation of previously reported, pyridoacridine 13C NMR data. Observations have been made on the delocalization of electrons and the presence of some functional groups that lead to changes in the chemical shift of some carbon resonances. The lack of mass spectra information for these alkaloids due to the compactness of their structures is further discussed. Moreover, the biosynthetic pathways of some of these metabolites have been shown since they could inspire biomimetic synthesis. The synthesis routes used to prepare members of these marine alkaloids (as well as their analogues, which are synthesized for biological purposes are also discussed. Pyridoacridines were found to have a large spectrum of bioactivity and this review highlights and compares the pharmacophores that are responsible for the observed bioactivity.

  4. Bioluminescence in the Ocean: Origins of Biological, Chemical, and Ecological Diversity

    Science.gov (United States)

    Widder, E. A.

    2010-05-01

    From bacteria to fish, a remarkable variety of marine life depends on bioluminescence (the chemical generation of light) for finding food, attracting mates, and evading predators. Disparate biochemical systems and diverse phylogenetic distribution patterns of light-emitting organisms highlight the ecological benefits of bioluminescence, with biochemical and genetic analyses providing new insights into the mechanisms of its evolution. The origins and functions of some bioluminescent systems, however, remain obscure. Here, I review recent advances in understanding bioluminescence in the ocean and highlight future research efforts that will unite molecular details with ecological and evolutionary relationships.

  5. Characterization of freestanding photoresist films for biological and MEMS applications

    International Nuclear Information System (INIS)

    Photoresists are light-sensitive resins used in a variety of technological applications. In most applications, however, photoresists are generally used as sacrificial layers or a structural layer that remains on the fabrication substrate. Thin layers of patterned 1002F photoresist were fabricated and released to form a freestanding film. Films of thickness in the range of 4.5–250 µm were patterned with through-holes to a resolution of 5 µm and an aspect ratio of up to 6:1. Photoresist films could be reliably released from the substrate after a 12 h immersion in water. The Young's modulus of a 50 µm-thick film was 1.43 ± 0.20 GPa. Use of the films as stencils for patterning sputtered metal onto a surface was demonstrated. These 1002F stencils were used multiple times without deterioration in feature quality. Furthermore, the films provided biocompatible, transparent surfaces of low autofluorescence on which cells could be grown. Culture of cells on a film with an isolated small pore enabled a single cell to be accessed through the underlying channel and loaded with exogenous molecules independently of nearby cells. Thus 1002F photoresist was patterned into thin, flexible, free-standing films that will have numerous applications in the biological and MEMS fields. (paper)

  6. Extraction, characterization and biological studies of phytochemicals from Mammea suriga

    Institute of Scientific and Technical Information of China (English)

    Mahesha M. Poojary; Kanivebagilu A.Vishnumurthy; Airody Vasudeva Adhikari

    2015-01-01

    The present work involves extraction of phytochemicals from the root bark of a well-known Indian traditional medicinal plant, viz. Mammea suriga, with various solvents and evaluation of their in vitro antimicrobial and antioxidant activities using standard methods. The phytochemical analysis indicates the presence of some interesting secondary metabolites like flavonoids, cardiac glycosides, alkaloids, saponins and tannins in the extracts. Also, the solvent extracts displayed promising anti-microbial activity against Staphylococcus aureus, Bacillus subtilis and Cryptococcus neoformans with inhibition zone in a range of 20–33 mm. Further, results of their antioxidant screening revealed that aqueous extract (with IC50 values of 111.51±1.03 and 31.05±0.92μg/mL in total reducing power assay and DPHH radical scavenging assay, respectively) and ethanolic extract (with IC50 values of 128.00±1.01 and 33.25±0.89μg/mL in total reducing power assay and DPHH radical scavenging assay, respectively) were better antioxidants than standard ascorbic acid. Interestingly, FT-IR analysis of each extract established the presence of various biologically active functional groups in it.

  7. Constraints on Fluctuations in Sparsely Characterized Biological Systems

    Science.gov (United States)

    Hilfinger, Andreas; Norman, Thomas M.; Vinnicombe, Glenn; Paulsson, Johan

    2016-02-01

    Biochemical processes are inherently stochastic, creating molecular fluctuations in otherwise identical cells. Such "noise" is widespread but has proven difficult to analyze because most systems are sparsely characterized at the single cell level and because nonlinear stochastic models are analytically intractable. Here, we exactly relate average abundances, lifetimes, step sizes, and covariances for any pair of components in complex stochastic reaction systems even when the dynamics of other components are left unspecified. Using basic mathematical inequalities, we then establish bounds for whole classes of systems. These bounds highlight fundamental trade-offs that show how efficient assembly processes must invariably exhibit large fluctuations in subunit levels and how eliminating fluctuations in one cellular component requires creating heterogeneity in another.

  8. A simulation method for determining the optical response of highly complex photonic structures of biological origin

    CERN Document Server

    Dolinko, Andrés E

    2013-01-01

    We present a method based on a time domain simulation of wave propagation that allows studying the optical response of a broad range of dielectric photonic structures. This method is particularly suitable for dealing with complex biological structures. One of the main features of the proposed approach is the simple and intuitive way of defining the setup and the photonic structure to be simulated, which can be done by feeding the simulation with a digital image of the structure. We also develop a set of techniques to process the behavior of the evolving waves within the simulation. These techniques include a direction filter, that permits decoupling of waves travelling simultaneously in different directions, a dynamic differential absorber, to cancel the waves reflected at the edges of the simulation space, a multi-frequency excitation scheme based on a filter that allows decoupling waves of different wavelengths travelling simultaneously, and a near-to-far-field approach to evaluate the resulting wavefield o...

  9. Biological affinities and adaptations of Bronze Age Bactrians: IV. A craniometric investigation of Bactrian origins.

    Science.gov (United States)

    Hemphill, B E

    1999-02-01

    Discovery of a previously unknown Bronze Age civilization (Oxus civilization) centered on the oases of Central Asia revealed the presence of large, preplanned urban centers immediately above sterile soil. Given the absence of local antecedents, the sudden appearance and proliferation of these Oxus civilization urban centers in the oases of Bactria and Margiana immediately raised the issue of where the inhabitants of these urban centers came from. Three hypotheses have been offered by archaeologists to account for the origins of Oxus civilization populations. These include the early influence model, the late colonization model, and the trichotomy model. Eleven craniometric variables from 12 Aeneolithic and Bronze Age samples, encompassing 657 adults from Central Asia, Iran, and the Indus Valley, are compared to test which if any of these hypotheses are supported by the pattern of phenetic affinities possessed by the Oxus civilization inhabitants of the north Bactrian oasis. Craniometric differences between samples are compared with Mahalanobis generalized distance (d2), and patterns of phenetic affinity are assessed with two types of cluster analysis (WPGMA, neighbor-joining method), multidimensional scaling, and principal coordinates analysis. Results of this analysis provide no support for either the late colonization model or the trichotomy model but do offer some support for the early influence model. Nevertheless, it is clear that the early influence model fails to account for a shift in interregional contacts, perhaps from western China to the north around 2000 BC, that appears to have played a major role in the origins of the Oxus civilization inhabitants of the north Bactrian oasis. PMID:9988380

  10. The Biological “Invariant of Motion” vs. “Struggle for Life”? On the Possible Quantum Mechanical Origin and Evolution of Semiotic Controls in Biology

    Directory of Open Access Journals (Sweden)

    András Balázs

    2013-10-01

    Full Text Available A novel, alternative and deeper view to the “selfish gene” paradigm is presented, describable as the “selfish code” frame. Introducing it, we put forth a quantum mechanical algorithm as a new description of the intracellular protein synthetizing machinery. The successive steps of the algorithm are, tentatively, semiotic constraints of the well-known quantum mechanical molecular “internal measurement” type. It is proposed that this molecular algorithm mediates a quantum mechanical time reversed dynamics with a primordial special version of this latter molecular measurement type (“mixed measurement” as its origin. It is furthermore suggested that this intracellular regressive algorithmical dynamics is a component of biological “motion”, the other, strongly coupled component being the macroscopic phenotypic motion. The biological “invariant of motion” of this hierarchically coupled overall generalized dynamics is suggested to be the evolutionally converged invariant genetic code vocabulary. It forms, possibly, the underlying internal “driving force” of evolution, as being “struggle for life”.

  11. Quantum Dots: Proteomics characterization of the impact on biological systems

    International Nuclear Information System (INIS)

    Over the past few years, Quantum Dots have been tested in most biotechnological applications that use fluorescence, including DNA array technology, immunofluorescence assays, cell and animal biology. Quantum Dots tend to be brighter than conventional dyes, because of the compounded effects of extinction coefficients that are an order of magnitude larger than those of most dyes. Their main advantage resides in their resistance to bleaching over long periods of time (minutes to hours), allowing the acquisition of images that are crisp and well contrasted. This increased photostability is especially useful for three-dimensional (3D) optical sectioning, where a major issue is bleaching of fluorophores during acquisition of successive z-sections, which compromises the correct reconstruction of 3D structures. The long-term stability and brightness of Quantum Dots make them ideal candidates also for live animal targeting and imaging. The vast majority of the papers published to date have shown no relevant effects on cells viability at the concentration used for imaging applications; higher concentrations, however, caused some issues on embryonic development. Adverse effects are due to be caused by the release of cadmium, as surface PEGylation of the Quantum Dots reduces these issues. A recently published paper shows evidences of an epigenetic effect of Quantum Dots treatment, with general histones hypoacetylation, and a translocation to the nucleus of p53. In this study, mice treated with Quantum Dots for imaging purposes were analyzed to investigate the impact on protein expression and networking. Differential mono-and bidimensional electrophoresis assays were performed, with the individuation of differentially expressed proteins after intravenous injection and imaging analysis; further, as several authors indicate an increase in reactive oxygen species as a possible mean of damage due to the Quantum Dots treatment, we investigated the signalling pathway of APE1/Ref1, a

  12. Quantum Dots: Proteomics characterization of the impact on biological systems

    Science.gov (United States)

    Pozzi-Mucelli, Stefano; Boschi, F.; Calderan, L.; Sbarbati, A.; Osculati, F.

    2009-05-01

    Over the past few years, Quantum Dots have been tested in most biotechnological applications that use fluorescence, including DNA array technology, immunofluorescence assays, cell and animal biology. Quantum Dots tend to be brighter than conventional dyes, because of the compounded effects of extinction coefficients that are an order of magnitude larger than those of most dyes. Their main advantage resides in their resistance to bleaching over long periods of time (minutes to hours), allowing the acquisition of images that are crisp and well contrasted. This increased photostability is especially useful for three-dimensional (3D) optical sectioning, where a major issue is bleaching of fluorophores during acquisition of successive z-sections, which compromises the correct reconstruction of 3D structures. The long-term stability and brightness of Quantum Dots make them ideal candidates also for live animal targeting and imaging. The vast majority of the papers published to date have shown no relevant effects on cells viability at the concentration used for imaging applications; higher concentrations, however, caused some issues on embryonic development. Adverse effects are due to be caused by the release of cadmium, as surface PEGylation of the Quantum Dots reduces these issues. A recently published paper shows evidences of an epigenetic effect of Quantum Dots treatment, with general histones hypoacetylation, and a translocation to the nucleus of p53. In this study, mice treated with Quantum Dots for imaging purposes were analyzed to investigate the impact on protein expression and networking. Differential mono-and bidimensional electrophoresis assays were performed, with the individuation of differentially expressed proteins after intravenous injection and imaging analysis; further, as several authors indicate an increase in reactive oxygen species as a possible mean of damage due to the Quantum Dots treatment, we investigated the signalling pathway of APE1/Ref1, a

  13. Phenolic Compounds Characterization and Biological Activities of Citrus aurantium Bloom

    Directory of Open Access Journals (Sweden)

    Armin Oskoueian

    2012-01-01

    Full Text Available Citrus plants are known to possess beneficial biological activities for human health. In addition, ethnopharmacological application of plants is a good tool to explore their bioactivities and active compounds. This research was carried out to evaluate the phenolic and flavonoid analysis, antioxidant properties, anti inflammatory and anti cancer activity of Citrus aurantium bloom. The total phenolics and flavonoids results revealed that methanolic extract contained high total phenolics and flavonoids compared to ethanolic and boiling water extracts. The obtained total phenolics value for methanolic Citrus aurantium bloom extract was 4.55 ± 0.05 mg gallic acid equivalent (GAE/g dry weight (DW, and for total flavonoids it was 3.83 ± 0.05 mg rutin equivalent/g DW. In addition, the RP-HPLC analyses of phenolics and flavonoids indicated the presence of gallic acid, pyrogallol, syringic acid, caffeic acid, rutin, quercetin and naringin as bioactive compounds. The antioxidant activity of Citrus aurantium bloom were examined by the 1,1-diphenyl-2-picryl-hydrazyl (DPPH assay and the ferric reducing/antioxidant potential (FRAP. The free radical scavenging and ferric reducing power activities were higher for the methanolic extract of Citrus aurantium bloom at a concentration of 300 μg/mL, with values of 55.3% and 51.7%, respectively, as compared to the corresponding boiling water and ethanolic extracts, but the activities were lower than those of antioxidant standards such as BHT and α-tocopherol. Furthermore, the anti-inflammatory result of methanolic extract showed appreciable reduction in nitric oxide production of stimulated RAW 264.7 cells at the presence of plant extract. Apart from that, the anticancer activity of the methanolic extract was investigated in vitro against human cancer cell lines (MCF-7; MDA-MB-231, human colon adenocarcinoma (HT-29 and Chang cell as a normal human hepatocyte. The obtained result demonstrated the moderate to

  14. Reduction theories elucidate the origins of complex biological rhythms generated by interacting delay-induced oscillations.

    Directory of Open Access Journals (Sweden)

    Ikuhiro Yamaguchi

    Full Text Available Time delay is known to induce sustained oscillations in many biological systems such as electroencephalogram (EEG activities and gene regulations. Furthermore, interactions among delay-induced oscillations can generate complex collective rhythms, which play important functional roles. However, due to their intrinsic infinite dimensionality, theoretical analysis of interacting delay-induced oscillations has been limited. Here, we show that the two primary methods for finite-dimensional limit cycles, namely, the center manifold reduction in the vicinity of the Hopf bifurcation and the phase reduction for weak interactions, can successfully be applied to interacting infinite-dimensional delay-induced oscillations. We systematically derive the complex Ginzburg-Landau equation and the phase equation without delay for general interaction networks. Based on the reduced low-dimensional equations, we demonstrate that diffusive (linearly attractive coupling between a pair of delay-induced oscillations can exhibit nontrivial amplitude death and multimodal phase locking. Our analysis provides unique insights into experimentally observed EEG activities such as sudden transitions among different phase-locked states and occurrence of epileptic seizures.

  15. Molecular characterization, biological forms and sporozoite rate of Anopheles stephensi in southern Iran

    Institute of Scientific and Technical Information of China (English)

    Ali Reza Chavshin; Mohammad Ali Oshaghi; Hasan Vatandoost; Ahmad Ali Hanafi-Bojd; Ahmad Raeisi; Fatemeh Nikpoor

    2014-01-01

    Objective: To identify the biological forms, sporozoite rate and molecular characterization of the Anopheles stephensi (An. stephensi) in Hormozgan and Sistan-Baluchistan provinces, the most important malarious areas in Iran. Methods: Wild live An. stephensi samples were collected from different malarious areas in southern Iran. The biological forms were identified based on number of egg-ridges. Molecular characterization of biological forms was verified by analysis of the mitochondrial cytochrome oxidase subunit I and II (mtDNA-COI/COII). The Plasmodium infection was examined in the wild female specimens by species-specific nested–PCR method. Results: Results showed that all three biological forms including mysorensis, intermediate and type are present in the study areas. Molecular investigations revealed no genetic variation between mtDNA COI/COII sequences of the biological forms and no Plasmodium parasites was detected in the collected mosquito samples. Conclusions:Presence of three biological forms with identical sequences showed that the known biological forms belong to a single taxon and the various vectorial capacities reported for these forms are more likely corresponded to other epidemiological factors than to the morphotype of the populations. Lack of malaria parasite infection in An. stephensi, the most important vector of malaria, may be partly due to the success and achievement of ongoing active malaria control program in the region.

  16. Distribution and origin of biologically available phosphorus in the water of the Meiliang Bay in summer

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    The investigation and continuous monitoring with an innovative iron oxide embedded cellulose acetate membrane (FeO/CAM) on the concentrations of biologically available phosphorus (BAP) were conducted in the Meiliang Bay of the Taihu Lake during summer in 2004. The results showed that the concentrations of dissolved (FeO-DP), particulate (FeO-PP) and total bioavailable phosphorus (FeO-P) had similar horizontal distribution. The BAP concentrations were the highest in those estuaries in the northern bay. With the decrease of the distance to the estuary or long shore,there was little difference between BAP concentrations in an open lake area. During the observation period, algal blooms occurred in most waters of the northern bay, which was reflected from the high concentrations of chlorophyll a (Chl-a). While they were not highest in the estuarine waters of those major rivers, this is the case for the BAP concentrations. The concentrations of Chl-a had a significantly positive correlation with those of bioavailable phosphorus in the open area of the Meiliang Bay.With the sediment resuspension induced by wind and wave, BAP concentrations increased in a short-term, indicating that the riverine P inputs mainly contribute to the concentrations of BAP in the estuarine water while internal P release was the major source of BAP in the open lake area. In the eutrophic shallow lake, the blooms of alga may cause pH increase and further result in internal P release. The above results showed that the new membrane of FeO/CAM can be used to monitor the concentrations of BAP and provide the scientific justifications for the control strategy of the lake eutrophication.

  17. Cyto-palynological, biochemical and molecular characterization of original and induced mutants of garden chrysanthemum

    International Nuclear Information System (INIS)

    A large number of new somatic flower color/type mutants have been evolved by induced mutations in different ornamentals. Few reports are available on the systematic work being done on comparative analysis of the original and the mutant cultivars. Attempt has been made for the comparative analysis of original cultivars and their respective induced mutants on cyto-palynological, biochemical and molecular characters for better and clear understanding of the exact mechanism involved in the origin and evolution of flower color mutations. Proper characterization and identification of new mutant cultivars is extremely important to protect plant breeder's rights for commercial exploitation. Chrysanthemum original varieties and their gamma ray induced mutants were selected as the materials for the present analysis. Critical cytological analysis with special reference to chromosome number, chromosomal aberrations, ICV, INV and DNA content showed no differences. The karyotypes were reasonably symmetrical. No mutant specific chromosomal aberrations could be detected. Thin layer chromatographic and spectrophotometric analysis of floret pigments indicated that somatic flower color changes in chrysanthemum are due to both qualitative and/or quantitative changes in pigments as a result of mutation induced by gamma rays in pigment biosynthesis pathway. Significant increase in pollen grain sterility was found in all the mutants. The pollen grains of all the cultivars and their mutants are basically 3(-4) zonocolporate with tectate spinose exine having perforations. No appreciable variation in pollen apertural character was noticed in any of the mutants. Significant changes in pollen exine surface pattern were found in 4 mutant varieties. The changes are inconsistent and do not correspond to the intensity of radiation. The similarity among the cultivars and mutants varied from 0.17 to 0.90 using RAPD analyses. Cultivars with different flower colors could be clearly distinguished. But

  18. Physical, chemical and biological characterization of the sanitary landfill leachate in Limeira-SP city.

    Directory of Open Access Journals (Sweden)

    Ronaldo Teixeira Pelegrini

    2007-07-01

    Full Text Available This work presents an evaluation of the physical, chemical and biological characteristics of the waste leachate originated from solids waste mass and after permanence in average of 24 hours in the captation pond, which is located on the sanitary landfill in Limeira-SP. The points were denominated Point 0: entrance of leachate in natura in the pond and Point 1: exit of leachate from the pond. The study was accomplished through of the monitoring of physical (pH, color, turbidity, conductivity and temperature, chemical (alkalinity, acidity, phosphorus, amoniacal nitrogen, nitrite, nitrate and TOC and biological (heterotrophic bacterial parameters during a period of 50 days.

  19. Biological and molecular characterization of classical swine fever challenge virus from India

    Directory of Open Access Journals (Sweden)

    Parveen Kumar

    2015-03-01

    Full Text Available Aim: The aim of this study was biological and molecular characterization of classical swine fever (CSF challenge virus from India. Materials and Methods: CSF challenge virus maintained at Division of Biological standardization was experimentally infected to two seronegative piglets. The biological characterization was done by clinical sign and symptoms along with postmortem findings. For molecular characterization 5’-nontranslated region, E2 and NS5B regions were amplified by reverse transcription polymerase chain reaction and sequenced. The sequences were compared with that of reference strains and the local field isolates to establish a phylogenetic relation. Results: The virus produced symptoms of acute disease in the piglets with typical post-mortem lesions. Phylogenetic analysis of the three regions showed that the current Indian CSF Challenge virus is having maximum similarity with the BresciaX strain (USA and Madhya Pradesh isolate (India and is belonging to subgroup 1.2 under Group 1. Conclusion: Based on biological and molecular characterization of CSF challenge virus from India is described as a highly virulent virus belonging to subgroup 1.2 under Group 1 along with some field isolates from India and Brescia strain.

  20. Gene expression analysis of zebrafish melanocytes, iridophores, and retinal pigmented epithelium reveals indicators of biological function and developmental origin.

    Directory of Open Access Journals (Sweden)

    Charles W Higdon

    Full Text Available In order to facilitate understanding of pigment cell biology, we developed a method to concomitantly purify melanocytes, iridophores, and retinal pigmented epithelium from zebrafish, and analyzed their transcriptomes. Comparing expression data from these cell types and whole embryos allowed us to reveal gene expression co-enrichment in melanocytes and retinal pigmented epithelium, as well as in melanocytes and iridophores. We found 214 genes co-enriched in melanocytes and retinal pigmented epithelium, indicating the shared functions of melanin-producing cells. We found 62 genes significantly co-enriched in melanocytes and iridophores, illustrative of their shared developmental origins from the neural crest. This is also the first analysis of the iridophore transcriptome. Gene expression analysis for iridophores revealed extensive enrichment of specific enzymes to coordinate production of their guanine-based reflective pigment. We speculate the coordinated upregulation of specific enzymes from several metabolic pathways recycles the rate-limiting substrate for purine synthesis, phosphoribosyl pyrophosphate, thus constituting a guanine cycle. The purification procedure and expression analysis described here, along with the accompanying transcriptome-wide expression data, provide the first mRNA sequencing data for multiple purified zebrafish pigment cell types, and will be a useful resource for further studies of pigment cell biology.

  1. Characterization and biological depectinization of hemp fibers originating from different stem sections

    DEFF Research Database (Denmark)

    Liu, Ming; Fernando, Dinesh; Meyer, Anne S.;

    2015-01-01

    stem sections withthe white rot fungi Phlebia radiata Cel 26 and Ceriporiopsis subvermispora. For the untreated hemp fibers,no apparent difference in tensile behavior for fiber bundles from different stem sections was observed,and more than 90% tested samples demonstrated plastic flow behavior. Fiber...

  2. Floral Biology and Hybridization Potential of Nine Accessions of Physic Nut Jatropha curcas L. originating from Three Continents

    Directory of Open Access Journals (Sweden)

    Ahoton, LE.

    2012-01-01

    Full Text Available Jatropha curcas is a shrub which has an important economic and medicinal role in tropical and subtropical zones of the world. The oil of its kernels can serve as fuel feedstock to produce diesel, indicating its potential as a renewable source of energy. In an attempt to introduce new variation into cultivated Jatropha curcas, a program of intraspecific hybridization with several ecotypes originating from Africa, Asia and America was undertaken. Field studies were performed over three years 2009, 2010 and 2011. Before achieving hybridization, the floral ratio and the breeding system of physic nut were studied in Southern Benin ecological conditions. Significant differences (P< 0.05 were observed between the analysed ecotypes regarding the number of female flowers. This study has also confirmed that the breeding system of Jatropha curcas is essentially outcrossing and that foraging insects are the main pollination actors of female flowers. New intraspecific hybrid combinations were produced involving nine accessions. Crosses results varied according to the origin and the direction of the hybridization. Crosses between accessions of J. curcas originating from Africa and Asia gave hybrids without difficulty. The data obtained confirm that apomixis might play a major role in J. curcas a reproductive biology. Considering the high number of female flowers per inflorescence produced by the accession from Ecuador, and the large genetic distance existing between this accession and those from Africa and Asia, it should constitute a valuable genetic stock for the development of F1 hybrids with local ecotypes of J. curcas. However, the use of growth regulators might be necessary to improve the hybridization success rate when it is used as female parent.

  3. Some biologically active oxovanadium(IV) complexes of triazole derived Schiff bases: their synthesis, characterization and biological properties.

    Science.gov (United States)

    Chohan, Zahid H; Sumrra, Sajjad H

    2010-10-01

    A series of biologically active oxovanadium(IV) complexes of triazole derived Schiff bases L(1)-L(5) have been synthesized and characterized by their physical, analytical, and spectral data. The synthesized ligands potentially act as bidentate, in which the oxygen of furfural and nitrogen of azomethine coordinate with the oxovanadium atom to give a stoichiometry of vanadyl complexes 1:2 (M:L) in a square-pyramidal geometry. In vitro antibacterial and antifungal activities on different species of pathogenic bacteria (E. coli, S. flexneri, P. aeruginosa, S. typhi, S. aureus, and B. subtilis) and fungi (T. longifusus, C. albicans, A. flavus, M. canis, F. solani, and C. glabrata) have been studied. All compounds showed moderate to significant antibacterial activity against one or more bacterial strains and good antifungal activity against most of the fungal strains. The brine shrimp bioassay was also carried out to check the cytotoxicity of coordinated and uncoordinated synthesized compounds. PMID:20429776

  4. Binding characterization, synthesis and biological evaluation of RXRα antagonists targeting the coactivator binding site.

    Science.gov (United States)

    Xu, Dingyu; Guo, Shangjie; Chen, Ziwen; Bao, Yuzhou; Huang, Fengyu; Xu, Dan; Zhang, Xindao; Zeng, Zhiping; Zhou, Hu; Zhang, Xiaokun; Su, Ying

    2016-08-15

    Previously we identified the first retinoid X receptor-alpha (RXRα) modulators that regulate the RXRα biological function via binding to the coregulator-binding site. Here we report the characterization of the interactions between the hit molecule and RXRα through computational modeling, mutagenesis, SAR and biological evaluation. In addition, we reported studies of additional new compounds and identified a molecule that mediated the NF-κB pathway by inhibiting the TNFα-induced IκBα degradation and p65 nuclear translocation. PMID:27450787

  5. Biological nutrients removal from the supernatant originating from the anaerobic digestion of the organic fraction of municipal solid waste.

    Science.gov (United States)

    Malamis, S; Katsou, E; Di Fabio, S; Bolzonella, D; Fatone, F

    2014-09-01

    This study critically evaluates the biological processes and techniques applied to remove nitrogen and phosphorus from the anaerobic supernatant produced from the treatment of the organic fraction of municipal solid waste (OFMSW) and from its co-digestion with other biodegradable organic waste (BOW) streams. The wide application of anaerobic digestion for the treatment of several organic waste streams results in the production of high quantities of anaerobic effluents. Such effluents are characterized by high nutrient content, because organic and particulate nitrogen and phosphorus are hydrolyzed in the anaerobic digestion process. Consequently, adequate post-treatment is required in order to comply with the existing land application and discharge legislation in the European Union countries. This may include physicochemical and biological processes, with the latter being more advantageous due to their lower cost. Nitrogen removal is accomplished through the conventional nitrification/denitrification, nitritation/denitritation and the complete autotrophic nitrogen removal process; the latter is accomplished by nitritation coupled with the anoxic ammonium oxidation process. As anaerobic digestion effluents are characterized by low COD/TKN ratio, conventional denitrification/nitrification is not an attractive option; short-cut nitrogen removal processes are more promising. Both suspended and attached growth processes have been employed to treat the anaerobic supernatant. Specifically, the sequencing batch reactor, the membrane bioreactor, the conventional activated sludge and the moving bed biofilm reactor processes have been investigated. Physicochemical phosphorus removal via struvite precipitation has been extensively examined. Enhanced biological phosphorus removal from the anaerobic supernatant can take place through the sequencing anaerobic/aerobic process. More recently, denitrifying phosphorus removal via nitrite or nitrate has been explored. The removal of

  6. Characterization of compost-like outputs from mechanical biological treatment of municipal solid waste.

    Science.gov (United States)

    Donovan, Sally M; Bateson, Thomas; Gronow, Jan R; Voulvoulis, Nikolaos

    2010-06-01

    Throughout the world, most municipal solid waste consists of biodegradable components. The most abundant biological component is cellulose, followed by hemicellulose and lignin. Recycling of these components is important for the carbon cycle. In an attempt to reduce the environmental impacts of biodegradable wastes, mechanical biological treatments (MBTs) are being used as a waste management process in many countries. MBT plants attempt to mechanically separate the biodegradable and nonbiodegradable components. The nonbiodegradable components are then sent for reprocessing or landfilled, whereas the biodegradable components are reduced in biological content through composting or anaerobic digestion, leaving a compost-like output (CLO). The further use of these partially degraded residues is uncertain, and in many cases it is likely that they will be landfilled. The implications of this for the future of landfill management are causing some concern because there is little evidence that the long-term emissions tail will be reduced. In this study, the CLOs from four different biological treatment processes were characterized for physical contamination through visual inspection and for biological content using a sequential digestion analysis. The results indicate that the composition of the incoming waste, dependent on the way the waste was collected/segregated, was the factor that influenced biological content most, with length of treatment process the second most important. PMID:20564995

  7. Open questions in origin of life: experimental studies on the origin of nucleic acids and proteins with specific and functional sequences by a chemical synthetic biology approach

    DEFF Research Database (Denmark)

    Adamala, K.; Anella, F.; Wieczorek, R.;

    2014-01-01

    In this mini-review we present some experimental approaches to the important issue in the origin of life, namely the origin of nucleic acids and proteins with specific and functional sequences. The formation of macromolecules on prebiotic Earth faces practical and conceptual difficulties. From the...

  8. Genetic and biological characterization of a densovirus isolate that affects dengue virus infection

    Directory of Open Access Journals (Sweden)

    Ana Luiza Pamplona Mosimann

    2011-05-01

    Full Text Available Brevidensoviruses have an encapsidated, single-stranded DNA genome that predominantly has a negative polarity. In recent years, they have received particular attention due to their potential role in the biological control of pathogenic arboviruses and to their unnoticed presence in cell cultures as contaminants. In addition, brevidensoviruses may also be useful as viral vectors. This study describes the first genetic and biological characterization of a mosquito densovirus that was isolated in Brazil; moreover, we examined the phylogenetic relationship between this isolate and the other brevidensoviruses. We further demonstrate that this densovirus has the potential to be used to biologically control dengue virus (DENV infection with in vitro co-infection experiments. The present study provides evidence that this densovirus isolate is a fast-spreading virus that affects cell growth and DENV infection.

  9. A contribution to the identification of charcoal origin in Brazil II - Macroscopic characterization of Cerrado species.

    Science.gov (United States)

    Gonçalves, Thaís A P; Nisgoski, Silvana; Oliveira, Julia S; Marcati, Carmen R; Ballarin, Adriano W; Muñiz, Graciela I B

    2016-05-13

    The Brazilian Cerrado is the richest savanna in the world. It is also one of the biomes more threatened in the country and a hotspot for conservation priorities. The main causes of deforestation in Cerrado are agricultural practices, livestock and charcoal production. Although charcoal has a minor impact, its consumption represents the deforestation of 16.000 Km² of the Cerrado. To contribute for the biomes's conservation it is very important to improve forestry supervision. Thus, in this work we present the macroscopic characterization of charcoal from 25 Cerrado's species. We simulate the real conditions of forest controllers by using the magnifications of 10x, 25x and 65x. Likewise, the charcoals micrographs are all of transverse sections due to the larger amount of anatomical information. We also analyzed texture, brightness, vitrification, ruptures and some special features. The species present several differences in their anatomical structure. Although some of them are very unique, this work does not intent to identify charcoals only by macroscopic analyses. But it might give directions to future identification of genera or species. It also provides knowledge for government agents to verify the documents of forestry origin by fast analyzing a sample of charcoal itself. PMID:27192198

  10. Synthesis, Spectral Characterization and biological activity of N-Substituted Derivatives of Tetrahydrofuran-2-ylmethylamine

    OpenAIRE

    Aziz-ur-Rehman; Rasool, S; Abbasi, M. A.; Khan, K. M.; Ahmad, I.; 2S. Afzal

    2014-01-01

    Tetrahydrofuran-2-ylmethylamine (1) was subjected to condensation reaction with 4-chlorobenzenesulfonyl chloride (2) in a mild basic medium to synthesize N-(tetrahydrofuran-2-ylmethyl)-4-chlorobenzenesulfonamide (3). A series of N-substituted derivatives, 5a-f, were synthesized by condensing alkyl/aralkyl halides, 4a-f, with 3 under polar aprotic conditions using sodium hydride activator. The spectral characterization of all the molecules included IR, 1H-NMR and EI-MS data. The biological act...

  11. Synthesis, characterization and exploration of the catalytic, supramolecular and biological applications of dinuclear complexes

    OpenAIRE

    Johnpeter, Justin Paul Raj; Therrien, Bruno

    2014-01-01

    The work presented in this thesis involves the synthesis and characterization of dinuclear ruthenium, rhodium and iridium complexes. The catalytic, supramolecular and biological applications of these dinuclear complexes will be discussed. In the first part, the synthesis of sawhorse-type diruthenium tetracarbonyl complexes and their catalytic applications in the supercritical carbon dioxide (scCO2) are presented. Synthesis of sawhorse-type molecular tweezers derived from pyrenyl and porphyrin...

  12. Characterization and Aerobic Biological Treatment of MSW: A Case Study of Hyderabad City

    OpenAIRE

    Muhammad Safar Korai; Rasool Bux Mahar; Abdul Razaque Sahito

    2014-01-01

    This study was conducted to assess the MSW (Municipal Solid Waste) generated in Hyderabad city for its suitability to make compost product through AB (Aerobic Biological) treatment. Assessment of MSW regarding its generation rate, quantification and characterization decides its suitability for composting process. Three AB treatment reactors R1 (natural air circulation and manually mixed reactor), R2 (compressed air circulation and manually mixed reactor) and R3 (compressed air circulation and...

  13. Synthesis, Characterization, and Biological Affinity of a Near-Infrared-Emitting Conjugated Oligoelectrolyte

    OpenAIRE

    Thomas, Alexander W.; Henson, Zachary B.; Du, Jenny; Vandenberg, Carol A.; Bazan, Guillermo C.

    2014-01-01

    A near-IR-emitting conjugated oligoelectrolyte (COE), ZCOE, was synthesized, and its photophysical features were characterized. The biological affinity of ZCOE is compared to that of an established lipid-membrane-intercalating COE, DSSN+, which has blue-shifted optical properties making it compatible for tracking preferential sites of accumulation. ZCOE exhibits diffuse staining of E. coli cells, whereas it displays internal staining of select yeast cells which also show propidium iodide stai...

  14. Characterizing silicic rocks in the Parana Magmatic Province: an update in their origin and emplacement

    Science.gov (United States)

    Luchetti, A. F.; Nardy, A. R.; Machado, F. B.; Gravley, D. M.; Gualda, G. A.

    2013-12-01

    The Paraná Magmatic Province (PMP), a large igneous province in southern Brazil (with correlative rocks in western Africa), includes 800,000 km3 of flood basalts generated during the rifting that ultimately led to the opening of the South Atlantic and covers nearly 75% of the surface of the Paraná Basin. Towards the top of the volcanic pile, silicic rocks are observed in many areas. They comprise a small proportion of the total erupted volume (2.5%), yet correspond to a significant flare-up of silicic volcanism over a period of only a few million years. In Brazil, the silicic rocks are divided into two groups, the Chapecó Member, which appears more northerly and includes porphyritic, crystal-rich, high-Ti dacites and trachydacites; and the Palmas Member, which includes fine-grained, crystal-poor, low-Ti dacites and rhyolites. The mode of emplacement (lavas vs. pyroclastic flows) of the volcanic units has been the subject of much controversy. The aim of this project is to better understand the origin and evolution of the PMP silicic rocks. We are combining information from the regional to the thin section scale to better characterize eruption dynamics and magma distribution prior to eruption. In both Palmas and Chapecó units, we observe features consistent with emplacement in the form of pyroclastic density currents, e.g. fiamme, variable weathering patterns consistent with local variations in welding at the outcrop scale, vertical gas-escape structures, sedimentary dykes, and lythophysae. Some ignimbrite units can be traced for 10's of kilometers and with more research on their spatial distribution could reveal the location of eruptive centers. In the Palmas, ignimbrites can be observed juxtaposed against or overlying discrete eruptive centers in the form of discordant structures that resemble domes and coulees typical of lava extrusion and flow. However, many of the silicic rocks are ambiguous and difficult to characterize, with features that could be related

  15. An intercomparison of γ-spectrometry on two samples of biological origin by eight laboratories in four countries

    International Nuclear Information System (INIS)

    This report gives details of the first inter-laboratory comparison of γ-spectrometry to be run within SPERA, the South Pacific Environmental Radioactivity Association since its inauguration in 1991. Laboratories in Australia, Chile, French Polynesia and New Zealand participated in the exercise. Two 'unknown' samples of biological origin were analysed. The first was a sample of milk powder derived from IAEA reference material. This sample provided an assessment of overall accuracy of 134Cs, 137Cs and 40K determinations. The second sample consisted of dried fish flesh including natural 40K and spiked with a mixed nuclide solution containing 210Pb, 109Cd, 54Mn, 60Co and trace 133Ba. Together the samples gave information on analytical precision over a range of energies and activities. When the results were compared with the recommended values and confidence intervals of the IAEA reference material, the overall accuracy of the γ-spectrometry analytical procedures was found to be good. The average mean values for combined laboratory data fell within the recommended value ranges for each isotope. Ninety percent of the individual laboratory isotope mean values were within two standard errors of the 95% confidence interval of the standard, 75% were within 1 s.e., and 33% of the analyses fell within the confidence interval. The largest sources of error were derived from reporting and calculating of results which gave a 16% gross error rate. (Author)

  16. Composition and origin of PM10 in Cape Verde: Characterization of long-range transport episodes

    Science.gov (United States)

    Salvador, P.; Almeida, S. M.; Cardoso, J.; Almeida-Silva, M.; Nunes, T.; Cerqueira, M.; Alves, C.; Reis, M. A.; Chaves, P. C.; Artíñano, B.; Pio, C.

    2016-02-01

    A receptor modelling study was performed to identify source categories and their contributions to the PM10 total mass at the Cape Verde archipelago. Trajectory statistical methods were also used to characterize the main atmospheric circulation patterns causing the transport of air masses and to geographically identify the main potential source areas of each PM10 source category. Our findings point out that the variability of the PM10 levels at Cape Verde was prompted by the advections of African mineral dust. The mineral dust load was mainly composed by clay-silicates mineral derived elements (22% of the PM10 total mass on average) with lower amounts of carbonates (9%). A clear northward gradient was observed in carbonates concentration that illustrates the differences in the composition according to the source regions of mineral dust. Mineral dust was frequently linked to industrial emissions from crude oil refineries, fertilizer industries as well as oil and coal power plants, located in the northern and north-western coast of the African continent (29%). Sea salt was also registered in the PM10 mass during most part of the sampling period, with a lower impact in the PM10 levels than the mineral dust one (26%). Combustion aerosols (6%) reached the highest mean values in summer as a consequence of the emissions from local-regional sources. Biomass burning aerosols produced from October to November in sub-sahelian latitudes, had a clear influence in the content of elemental carbon (EC) recorded at Cape Verde but a small impact in the PM10 total mass levels. A minor contribution to the PM10 mass has been associated to secondary inorganic compounds-SIC. Namely, ammonium sulfate and nitrate (SIC 1-5%) and calcium sulfate and nitrate (SIC 2-3%). The main origin of SIC 1 was attributed to emissions of SO2 and NOx from industrial sources located in the northern and north-western African coast and from wildfires produced in the continent. SIC 2 had a clear regional origin

  17. Biologic

    CERN Document Server

    Kauffman, L H

    2002-01-01

    In this paper we explore the boundary between biology and the study of formal systems (logic). In the end, we arrive at a summary formalism, a chapter in "boundary mathematics" where there are not only containers but also extainers ><, entities open to interaction and distinguishing the space that they are not. The boundary algebra of containers and extainers is to biologic what boolean algebra is to classical logic. We show how this formalism encompasses significant parts of the logic of DNA replication, the Dirac formalism for quantum mechanics, formalisms for protein folding and the basic structure of the Temperley Lieb algebra at the foundations of topological invariants of knots and links.

  18. Characterization of genetic defects of hemophilia A in patients of Chinese origin

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Shu-Wha; Lin, Shu-Rung; Shen, Ming-Ching (National Taiwan Univ., Taipei (Taiwan, Province of China))

    1993-12-01

    The molecular characterization of hemophilia A of Chinese origin was carried out by the polymerase chain reaction (PCR) and direct sequencing of patient's factor VIII genes. Single-strand conformation polymorphism (SSCP) and dideoxy fingerprinting (ddF) were used as screening methods to detect mutated DNAs. A total of 102 individuals from 87 different families, including 10 patients (10 families) with mild-to-moderate and 92 patients (77 families) with severe hemophilia A, were analyzed by PCR-SSCP and PCR-ddF. Of the 87 independent cases, 40 revealed a single mutation in the coding regions of their factor VIII genes. These mutations include 21 with single base changes resulting in 8 nonsense and 13 missense codons, 16 with deletion or insertion of 1-11 nucleotides, and 3 with deletion of large DNA fragments. The frequency of 8 of the identified factor VIII polymorphisms or silent mutations was also determined among Chinese. The frequencies for codons 1241, 1269, and 2223 (the numbering system follows J. Gitschier et al., 1984, Nature 312: 326-330) were found to be different from those reported for other populations. As for the 47 severe cases whose mutational events were not readily detected by PCR-SSCP and PCR-ddF, the reverse transcriptase PCR method was applied. In 24 such cases analyzed, 17 were found to be of the [open quotes]intron 22 mutations[close quotes] as described by Naylor et al. (1992, The Lancet, 342: 1066-1067), accounting for 39% of Chinese patients with hemophilia A. 31 refs., 2 figs., 6 tabs.

  19. Molecular characterization and evolutionary origins of farinin genes in Brachypodium distachyon L.

    Science.gov (United States)

    Subburaj, Saminathan; Luo, Nana; Lu, Xiaobing; Li, Xiaohui; Cao, Hui; Hu, Yingkao; Li, Jiarui; Yan, Yueming

    2016-08-01

    Farinins are one of the oldest members of the gluten family in wheat and Aegilops species, and they influence dough properties. Here, we performed the first detailed molecular genetic study on farinin genes in Brachypodium distachyon L., the model species for Triticum aestivum. A total of 51 b-type farinin genes were cloned and characterized, including 27 functional and 24 non-functional pseudogenes from 14 different B. distachyon accessions. All genes were highly similar to those previously reported from wheat and Aegilops species. The identification of deduced amino acid sequences showed that b-type farinins across Triticeae genomes could be classified as b1-, b2-, b3-, and b4-type farinins; however, B. distachyon had only b3- and b4-type farinins. Real-time quantitative reverse transcription polymerase chain reaction (qRT-PCR) revealed that farinin genes are transcribed into mRNA in B. distachyon at much lower levels than in Triticeae, despite the presence of cis-acting elements in promoter regions. Phylogenetic analysis suggested that Brachypodium farinins may have closer relationships with common wheat and further confirmed four different types of b-type farinins in Triticeae and Brachypodium genomes, corresponding to b1, b2, b3 (group 1), and b4 (group 2). A putative evolutionary origin model of farinin genes in Brachypodium, Triticum, and the related species suggests that all b-type farinins diverged from their common ancestor ~3.2 million years ago (MYA). The b3 and b4 types could be considered older in the farinin family. The results explain the loss of b1- and b2-type farinin alleles in Brachypodium. PMID:26519166

  20. Characterization of a Dairy Gyr herd with respect to its mitochondrial DNA (mt DNA origin

    Directory of Open Access Journals (Sweden)

    Anibal Eugênio Vercesi Filho

    2010-01-01

    Full Text Available The Zebu breeds were introduced in Brazil mainly in the last century by imports from the Indian subcontinent. When the Zebu cattle arrived, the national herd suffered a significative change by backcrossing the national cows of taurine origin with Zebu sires. These processes created a polymorphism in the mitochondrial DNA (mtDNA in the Zebu animals with are in a major part derived from backcrossing and sharing mtDNA of taurine origin. To verify the maternal origin of cows belonging to the Dairy Gyr herd of APTA, Mococa 60 females were analyzed and 33 presented mtDNA from Bos taurus origin and 27 presented mtDNA from Bos indicus origin. None of these animals presented patterns of both mtDNA origins, indicating absence of heteroplasmy for these mitochondrial genotypes.

  1. Characterizing Biological Particles in the Atmosphere at two Sites in Colorado

    Science.gov (United States)

    Garcia, E.; Prenni, A. J.; Prenni, J.; Rivest, J.; Demott, P. J.; Kreidenweis, S. M.

    2010-12-01

    The composition and distribution of primary biological aerosol particles (PBAPs) in the atmosphere is constantly changing due to both natural and anthropogenic activities. In this presentation, we will describe measurements aimed at better characterizing this population at Manitou Experimental Forest, in Pike National Forest in Colorado and in Fort Collins, CO. This work is part of the larger Biosphere-atmosphere Exchange of Aerosols within Cloud, Carbon and Hydrologic cycles, including Organics and Nitrogen (BEACHON) field study program, which is aimed at studying the connections between the biogeochemical cycling of carbon and water in semi-arid regions of the Western U.S. To this end, we are collecting PBAP with SKC impingers into water, which are subsequently analyzed by flow cytometery to determine the atmospheric biological particle concentration. Further, we are generating a gene library of the small subunit RNA genes to speciate the PBAPs in our collected samples using Sanger sequencing. These experiments are performed throughout the year to better understand seasonal variability of atmospheric microbial communities at the selected sites. A small handful of PBAPs have been found to be some of the best ice nucleators in the atmosphere, inducing ice nucleation as high as -2oC; these particles may play pivotal roles in influencing ice formation in cold clouds and, thereby, climate. Preliminary data will be presented aimed at better characterizing this important subset of biological particles.

  2. Wear Debris Characterization and Corresponding Biological Response: Artificial Hip and Knee Joints

    Directory of Open Access Journals (Sweden)

    Md J. Nine

    2014-02-01

    Full Text Available Wear debris, of deferent sizes, shapes and quantities, generated in artificial hip and knees is largely confined to the bone and joint interface. This debris interacts with periprosthetic tissue and may cause aseptic loosening. The purpose of this review is to summarize and collate findings of the recent demonstrations on debris characterization and their biological response that influences the occurrence in implant migration. A systematic review of peer-reviewed literature is performed, based on inclusion and exclusion criteria addressing mainly debris isolation, characterization, and biologic responses. Results show that debris characterization largely depends on their appropriate and accurate isolation protocol. The particles are found to be non-uniform in size and non-homogeneously distributed into the periprosthetic tissues. In addition, the sizes, shapes, and volumes of the particles are influenced by the types of joints, bearing geometry, material combination, and lubricant. Phagocytosis of wear debris is size dependent; high doses of submicron-sized particles induce significant level of secretion of bone resorbing factors. However, articles on wear debris from engineered surfaces (patterned and coated are lacking. The findings suggest considering debris morphology as an important parameter to evaluate joint simulator and newly developed implant materials.

  3. Opuntia ficus indica peel derived pectin mediated hydroxyapatite nanoparticles: Synthesis, spectral characterization, biological and antimicrobial activities

    Science.gov (United States)

    Gopi, D.; Kanimozhi, K.; Kavitha, L.

    2015-04-01

    In the present study, we have adapted a facile and efficient green route for the synthesis of HAP nanoparticles using pectin as a template which was extracted from the peel of prickly pear (Opuntia ficus indica) fruits. The concentration of pectin plays a major role in the behavior of crystallinity, purity, morphology as well as biological property of the as-synthesized HAP nanoparticles. The extracted pectin and the as-synthesized nanoparticles were characterized by various analytical techniques. The in vitro apatite formation on the surface of the as-synthesized nanoparticles in simulated body fluid (SBF) for various days showed an enhanced bioactivity. Also, the antimicrobial activity was investigated using various microorganisms. All the results revealed the formation of pure, low crystalline and discrete granular like HAP nanoparticles of size around 25 nm with enhanced biological and antimicrobial activities. Hence the as-synthesized nanoparticles can act as a better bone regenerating material in the field of biomedicine.

  4. From Synthesis to Biological Impact of Pd (II) Complexes: Synthesis, Characterization, and Antimicrobial and Scavenging Activity

    Science.gov (United States)

    Sharma, Nitin Kumar; Ameta, Rakesh Kumar; Singh, Man

    2016-01-01

    The Pd (II) complexes with a series of halosubstituted benzylamine ligands (BLs) have been synthesized and characterized with different spectroscopic technique such as FTIR, UV/Vis, LCMS, 1H, and 13C NMR. Their molecular sustainability in different solvents such as DMSO, DMSO : H2O, and DMSO : PBS at physiological condition (pH 7.2) was determined by UV/Vis spectrophotometer. The in vitro antibacterial and antifungal activities of the complexes were investigated against Gram-positive and Gram-negative microbes and two different fungi indicated their significant biological potential. Additionally, their antioxidant activity has been analyzed with DPPH• free radical through spectrophotometric method and the result inferred them as an antioxidant. The stronger antibacterial and antioxidant activities of the synthesized complexes suggested them as a stronger antimicrobial agent. Our study advances the biological importance of palladium (II) amine complexes in the field of antimicrobial and antioxidant activities. PMID:27119023

  5. Patterning and characterization of surfaces with organic and biological molecules by the scanning electrochemical microscope.

    Science.gov (United States)

    Turyan, I; Matsue, T; Mandler, D

    2000-08-01

    A novel approach for micropatterning of surfaces with organic and biological microstructures using the scanning electrochemical microscope (SECM) is described. The approach is based on the introduction of the spatial resolution by local deposition of gold particles followed by monolayer formation and functionalization. Specifically, gold patterns were deposited locally on silicon wafers with the SECM as a result of the controlled anodic dissolution of a gold microelectrode. The gold patterns were further used as microsubstrates for assembling cystamine monolayers to which either fluoresceine isothiocyanate (FIT) or glucose oxidase (GOD) were covalently attached. Characterization of the organic monolayers, as well as the biological activity of the enzyme patterns, was carried out by fluorescence microscopy and the SECM, respectively. PMID:10952523

  6. Surface chemical and biological characterization of flax fabrics modified with silver nanoparticles for biomedical applications

    Energy Technology Data Exchange (ETDEWEB)

    Paladini, F., E-mail: federica.paladini@unisalento.it [Department of Engineering for Innovation, University of Salento, Via per Monteroni, 73100 Lecce (Italy); Picca, R.A.; Sportelli, M.C.; Cioffi, N. [Department of Chemistry, University of Bari “Aldo Moro”, Via Orabona 4, 70126 Bari (Italy); Sannino, A.; Pollini, M. [Department of Engineering for Innovation, University of Salento, Via per Monteroni, 73100 Lecce (Italy)

    2015-07-01

    Silver nanophases are increasingly used as effective antibacterial agent for biomedical applications and wound healing. This work aims to investigate the surface chemical composition and biological properties of silver nanoparticle-modified flax substrates. Silver coatings were deposited on textiles through the in situ photo-reduction of a silver solution, by means of a large-scale apparatus. The silver-coated materials were characterized through X-ray Photoelectron Spectroscopy (XPS), to assess the surface elemental composition of the coatings, and the chemical speciation of both the substrate and the antibacterial nanophases. A detailed investigation of XPS high resolution regions outlined that silver is mainly present on nanophases' surface as Ag{sub 2}O. Scanning electron microscopy and energy dispersive X-ray spectroscopy were also carried out, in order to visualize the distribution of silver particles on the fibers. The materials were also characterized from a biological point of view in terms of antibacterial capability and cytotoxicity. Agar diffusion tests and bacterial enumeration tests were performed on Gram positive and Gram negative bacteria, namely Staphylococcus aureus and Escherichia coli. In vitro cytotoxicity tests were performed through the extract method on murine fibroblasts in order to verify if the presence of the silver coating affected the cellular viability and proliferation. Durability of the coating was also assessed, thus confirming the successful scaling up of the process, which will be therefore available for large-scale production. - Highlights: • Silver nanophases are increasingly used as effective antibacterial agent for biomedical applications. • Silver coatings were deposited on textiles through the in situ photo-reduction of a silver solution. • Flax fabrics were characterized from a biological and surface chemical point of view. • Scaling up of the process was confirmed.

  7. Surface chemical and biological characterization of flax fabrics modified with silver nanoparticles for biomedical applications

    International Nuclear Information System (INIS)

    Silver nanophases are increasingly used as effective antibacterial agent for biomedical applications and wound healing. This work aims to investigate the surface chemical composition and biological properties of silver nanoparticle-modified flax substrates. Silver coatings were deposited on textiles through the in situ photo-reduction of a silver solution, by means of a large-scale apparatus. The silver-coated materials were characterized through X-ray Photoelectron Spectroscopy (XPS), to assess the surface elemental composition of the coatings, and the chemical speciation of both the substrate and the antibacterial nanophases. A detailed investigation of XPS high resolution regions outlined that silver is mainly present on nanophases' surface as Ag2O. Scanning electron microscopy and energy dispersive X-ray spectroscopy were also carried out, in order to visualize the distribution of silver particles on the fibers. The materials were also characterized from a biological point of view in terms of antibacterial capability and cytotoxicity. Agar diffusion tests and bacterial enumeration tests were performed on Gram positive and Gram negative bacteria, namely Staphylococcus aureus and Escherichia coli. In vitro cytotoxicity tests were performed through the extract method on murine fibroblasts in order to verify if the presence of the silver coating affected the cellular viability and proliferation. Durability of the coating was also assessed, thus confirming the successful scaling up of the process, which will be therefore available for large-scale production. - Highlights: • Silver nanophases are increasingly used as effective antibacterial agent for biomedical applications. • Silver coatings were deposited on textiles through the in situ photo-reduction of a silver solution. • Flax fabrics were characterized from a biological and surface chemical point of view. • Scaling up of the process was confirmed

  8. Microbiota characterization of a Belgian protected designation of origin cheese, Herve cheese, using metagenomic analysis.

    Science.gov (United States)

    Delcenserie, V; Taminiau, B; Delhalle, L; Nezer, C; Doyen, P; Crevecoeur, S; Roussey, D; Korsak, N; Daube, G

    2014-10-01

    . Corynebacterium casei and Enterococcus faecalis were more prevalent in the raw milk cheeses, whereas Psychrobacter celer was present in the pasteurized milk cheeses. However, this specific microbiota represented a low proportion of the cheese microbiota. This study demonstrated that Herve cheese microbiota is rich and that pasteurized milk cheeses are microbiologically very close to raw milk cheeses, probably due to the similar manufacturing process. The characterization of the microbiota of this particular protected designation of origin cheese was useful in enabling us to gain a better knowledge of the bacteria responsible for the character of this cheese. PMID:25064656

  9. Physical-chemical characterization of nanoparticles in relevant biological environments and their interactions with the cell surface

    OpenAIRE

    Di Silvio, Desire

    2015-01-01

    Nanoparticles (NPs) are versatile tools for nanomedicine and tuning features such as material, size and charge, imaging and targeting can be accomplished. However, NPs behaviour in vivo is modified upon interaction with the biological matter and formation of a protein corona (PC) coating the NP. The PC determines the NP biological identity and it is the ultimate interface with the surrounding environment. Therefore, a deep characterization of the NPs in biological media is important to predic...

  10. Synthesis, Spectral Characterization and biological activity of N-Substituted Derivatives of Tetrahydrofuran-2-ylmethylamine

    Directory of Open Access Journals (Sweden)

    Aziz-ur-Rehman

    2014-06-01

    Full Text Available Tetrahydrofuran-2-ylmethylamine (1 was subjected to condensation reaction with 4-chlorobenzenesulfonyl chloride (2 in a mild basic medium to synthesize N-(tetrahydrofuran-2-ylmethyl-4-chlorobenzenesulfonamide (3. A series of N-substituted derivatives, 5a-f, were synthesized by condensing alkyl/aralkyl halides, 4a-f, with 3 under polar aprotic conditions using sodium hydride activator. The spectral characterization of all the molecules included IR, 1H-NMR and EI-MS data. The biological activity evaluation rendered 5c as moderate inhibitor of all the bacterial strains.

  11. Molecular cloning and biological characterization of the human excision repair gene ERCC-3.

    OpenAIRE

    Weeda, G; van Ham, R C; Masurel, R; Westerveld, A; Odijk, H; Wit, J.; Bootsma, D; van der Eb, A J; Hoeijmakers, J. H.

    1990-01-01

    In this report we present the cloning, partial characterization, and preliminary studies of the biological activity of a human gene, designated ERCC-3, involved in early steps of the nucleotide excision repair pathway. The gene was cloned after genomic DNA transfection of human (HeLa) chromosomal DNA together with dominant marker pSV3gptH to the UV-sensitive, incision-defective Chinese hamster ovary (CHO) mutant 27-1. This mutant belongs to complementation group 3 of repair-deficient rodent m...

  12. Quality and Batch-to-Batch Consistency of Original and Biosimilar Epoetin Products

    NARCIS (Netherlands)

    Halim, Liem Andhyk; Brinks, Vera; Jiskoot, Wim; Romeijn, Stefan; Haselberg, Rob; Burns, Chris; Wadhwa, Meenu; Schellekens, Huub

    2016-01-01

    Comprehensive physicochemical characterization and biological assays are essential parts in assessing quality attributes of biologicals. Here, we compared the quality of different marketed recombinant human erythropoietin (epoetin) products: originators, Eprex and NeoRecormon as well as 2 biosimilar

  13. Fully automatic characterization and data collection from crystals of biological macromolecules

    Energy Technology Data Exchange (ETDEWEB)

    Svensson, Olof; Malbet-Monaco, Stéphanie; Popov, Alexander; Nurizzo, Didier, E-mail: nurizzo@esrf.fr [European Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38043 Grenoble (France); Bowler, Matthew W., E-mail: nurizzo@esrf.fr [European Molecular Biology Laboratory, Grenoble Outstation, 71 Avenue des Martyrs, CS 90181, 38042 Grenoble (France); Université Grenoble Alpes–EMBL–CNRS, Grenoble Outstation, 71 Avenue des Martyrs, CS 90181, 38042 Grenoble (France); European Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38043 Grenoble (France)

    2015-07-31

    A fully automatic system has been developed that performs X-ray centring and characterization of, and data collection from, large numbers of cryocooled crystals without human intervention. Considerable effort is dedicated to evaluating macromolecular crystals at synchrotron sources, even for well established and robust systems. Much of this work is repetitive, and the time spent could be better invested in the interpretation of the results. In order to decrease the need for manual intervention in the most repetitive steps of structural biology projects, initial screening and data collection, a fully automatic system has been developed to mount, locate, centre to the optimal diffraction volume, characterize and, if possible, collect data from multiple cryocooled crystals. Using the capabilities of pixel-array detectors, the system is as fast as a human operator, taking an average of 6 min per sample depending on the sample size and the level of characterization required. Using a fast X-ray-based routine, samples are located and centred systematically at the position of highest diffraction signal and important parameters for sample characterization, such as flux, beam size and crystal volume, are automatically taken into account, ensuring the calculation of optimal data-collection strategies. The system is now in operation at the new ESRF beamline MASSIF-1 and has been used by both industrial and academic users for many different sample types, including crystals of less than 20 µm in the smallest dimension. To date, over 8000 samples have been evaluated on MASSIF-1 without any human intervention.

  14. Chemical and biological characterization of residential oil burner emission. A literature survey

    International Nuclear Information System (INIS)

    This literature study covers the time period 1980 to 1993 and is concerned with oil burners used for residential heating with a nominal heating power of less than 20 kW, which are normally used in one-family houses. Emission samples from domestic heaters using organic fuels consists of a very complex matrix of pollutants ranging from aggregate states solid to gaseous. Biological effects elicited by exhaust emissions have been detected and determined. It has been shown for diesel vehicles that selection of fuel properties has an impact on combustion reaction paths which results in different exhaust chemical compositions. It was also determined that diesel fuel properties have an impact on the biological activity of diesel exhaust emissions, which is to be expected from their chemical characterization. As a result of this, Sweden has an environmental classification of diesel fuels which has been in force since 1991. Analogously, the Swedish Environmental Protection Agency has asked whether detrimental environmental and health effects from residential heating can be reduced by selection of fuel properties, and if so by how much? In addition, which properties are most important to control in a future environmental classification of heating oils? As a first step in this process, a literature survey was performed. Major topics were: Sampling technology, chemical composition, biological activity, and risk assessment of emissions. 33 refs, 11 tabs

  15. PIXE characterization of tissues surrounding metallic prostheses coated with biological glasses

    Energy Technology Data Exchange (ETDEWEB)

    Barbotteau, Y. E-mail: yves.barbotteau@qse.tohoku.ac.jp; Irigaray, J.L.; Moretto, Ph

    2004-01-01

    Biological glasses can be used as coatings for metallic prostheses in order to prevent corrosion. According to their composition, these glasses have different properties. We studied, in vivo, two glasses referred to as BVA and BVH. They are used as coatings of Ti6Al4V metallic implant. BVA glass disappears after 3 months of implantation and is replaced by bone. Prostheses initially coated by this glass have a larger osseous contact perimeter compared to the uncoated prostheses. This ensures a better anchoring of the implant and limits the micro-motions which cause wear debris. BVH glass keeps a constant composition during implantation and it is used like a layer which isolates metal implant from biological environment. In order to characterize the bony environment surrounding implants, we have used PIXE and RBS methods. This paper shows results of the behavior of bony tissue under micro-beam, the quality tests of new bone which replaces the BVA glass coating and the evaluation of corrosion effects. Titanium release in bony tissues begins when the metal surface of the prosthesis is exposed to biological fluids. After a few months of implantation, the titanium contamination is stabilized and remains localized within the first tens of micrometers of surrounding bone.

  16. PIXE characterization of tissues surrounding metallic prostheses coated with biological glasses

    International Nuclear Information System (INIS)

    Biological glasses can be used as coatings for metallic prostheses in order to prevent corrosion. According to their composition, these glasses have different properties. We studied, in vivo, two glasses referred to as BVA and BVH. They are used as coatings of Ti6Al4V metallic implant. BVA glass disappears after 3 months of implantation and is replaced by bone. Prostheses initially coated by this glass have a larger osseous contact perimeter compared to the uncoated prostheses. This ensures a better anchoring of the implant and limits the micro-motions which cause wear debris. BVH glass keeps a constant composition during implantation and it is used like a layer which isolates metal implant from biological environment. In order to characterize the bony environment surrounding implants, we have used PIXE and RBS methods. This paper shows results of the behavior of bony tissue under micro-beam, the quality tests of new bone which replaces the BVA glass coating and the evaluation of corrosion effects. Titanium release in bony tissues begins when the metal surface of the prosthesis is exposed to biological fluids. After a few months of implantation, the titanium contamination is stabilized and remains localized within the first tens of micrometers of surrounding bone

  17. Finite element simulation for the mechanical characterization of soft biological materials by atomic force microscopy.

    Science.gov (United States)

    Valero, C; Navarro, B; Navajas, D; García-Aznar, J M

    2016-09-01

    The characterization of the mechanical properties of soft materials has been traditionally performed through uniaxial tensile tests. Nevertheless, this method cannot be applied to certain extremely soft materials, such as biological tissues or cells that cannot be properly subjected to these tests. Alternative non-destructive tests have been designed in recent years to determine the mechanical properties of soft biological tissues. One of these techniques is based on the use of atomic force microscopy (AFM) to perform nanoindentation tests. In this work, we investigated the mechanical response of soft biological materials to nanoindentation with spherical indenters using finite element simulations. We studied the responses of three different material constitutive laws (elastic, isotropic hyperelastic and anisotropic hyperelastic) under the same process and analyzed the differences thereof. Whereas linear elastic and isotropic hyperelastic materials can be studied using an axisymmetric simplification, anisotropic hyperelastic materials require three-dimensional analyses. Moreover, we established the limiting sample size required to determine the mechanical properties of soft materials while avoiding boundary effects. Finally, we compared the results obtained by simulation with an estimate obtained from Hertz theory. Hertz theory does not distinguish between the different material constitutive laws, and thus, we proposed corrections to improve the quantitative measurement of specific material properties by nanoindentation experiments. PMID:27214690

  18. Toward the characterization of biological toxins using field-based FT-IR spectroscopic instrumentation

    Science.gov (United States)

    Schiering, David W.; Walton, Robert B.; Brown, Christopher W.; Norman, Mark L.; Brewer, Joseph; Scott, James

    2004-12-01

    IR spectroscopy is a broadly applicable technique for the identification of covalent materials. Recent advances in instrumentation have made Fourier Transform infrared (FT-IR) spectroscopy available for field characterization of suspect materials. Presently, this instrumentation is broadly deployed and used for the identification of potential chemical hazards. This discussion concerns work towards expanding the analytical utility of field-based FT-IR spectrometry in the characterization of biological threats. Two classes of materials were studied: biologically produced chemical toxins which were non-peptide in nature and peptide toxin. The IR spectroscopic identification of aflatoxin-B1, trichothecene T2 mycotoxin, and strychnine was evaluated using the approach of spectral searching against large libraries of materials. For pure components, the IR method discriminated the above toxins at better than the 99% confidence level. The ability to identify non-peptide toxins in mixtures was also evaluated using a "spectral stripping" search approach. For the mixtures evaluated, this method was able to identify the mixture components from ca. 32K spectral library entries. Castor bean extract containing ricin was used as a representative peptide toxin. Due to similarity in protein spectra, a SIMCA pattern recognition methodology was evaluated for classifying peptide toxins. In addition to castor bean extract the method was validated using bovine serum albumin and myoglobin as simulants. The SIMCA approach was successful in correctly classifying these samples at the 95% confidence level.

  19. OPEN QUESTIONS IN ORIGIN OF LIFE: EXPERIMENTAL STUDIES ON THE ORIGIN OF NUCLEIC ACIDS AND PROTEINS WITH SPECIFIC AND FUNCTIONAL SEQUENCES BY A CHEMICAL SYNTHETIC BIOLOGY APPROACH

    Directory of Open Access Journals (Sweden)

    Katarzyna Adamala

    2014-02-01

    We have recently addressed these questions by using a chemical synthetic biology approach. In particular, we have tested the catalytic activity of small peptides, like Ser-His, with respect to peptide- and nucleotides-condensation, as a realistic model of primitive organocatalysis. We have also set up a strategy for exploring the sequence space of random proteins and RNAs (the so-called “never born biopolymer” project with respect to the production of folded structures. Being still far from solved, the main aspects of these “open questions” are discussed here, by commenting on recent results obtained in our groups and by providing a unifying view on the problem and possible solutions. In particular, we propose a general scenario for macromolecule formation via fragment-condensation, as a scheme for the emergence of specific sequences based on molecular growth and selection.

  20. Characterization of Spanish honeys with protected designation of origin "Miel de Granada" according to their mineral content.

    Science.gov (United States)

    de Alda-Garcilope, C; Gallego-Picó, A; Bravo-Yagüe, J C; Garcinuño-Martínez, R M; Fernández-Hernando, P

    2012-12-01

    Honey attributes such as geographical origin or specified botanical sources often command a premium price due to their organoleptic or pharmacoactive properties. "Miel de Granada" is a highly quality product with protected designation of origin (PDO) which includes six monofloral honeys and two multifloral honeys. Our objective was the characterization of "Miel de Granada" according to their metal content. Metal content was specific enough and allowed discrimination from honeys of different botanical and geographical origins and confirmed the authenticity of PDO labelling as Granada product with the determination of only five elements (K, Na, Ca, Mg and Zn). Chemometric techniques as cluster analysis and ANOVA were used to classify honeys according to their botanical and geographical origin in the metal data. Metal content marks the differences in honey samples and can be used as a tool to assess the quality of honeys. ANOVA showed significant differences among rosemary honeys from different geographical areas despite the botanical factor weight. Our research contributes to the groundwork studies to determine the geographical origin of Spanish honeys. PMID:22953923

  1. Molecular Characterization of Foot-and-Mouth Disease Virus Type C of Indian Origin

    OpenAIRE

    Nagendrakumar, Singanallur Balasubramanian; Reddy, Guddeti Srinivas; Chandran, Dev; Thiagarajan, Dorairajan; Rangarajan, Pundi Narasimha; Srinivasan, Villuppanoor Alwar

    2005-01-01

    Comparison of nucleotide sequences of the partial 1D region of foot-and-mouth disease type C viruses of Indian origin with those of European, South American, and Southeast Asian viruses revealed that the Indian viruses form a distinct genotype. The vaccine strain C IND/51/79 belongs to this genotype and may be a prototype strain of this genotype.

  2. New neutral and lipophilic technetium complexes based on a cytectrene moiety. Synthesis, characterization and biological evaluation

    Energy Technology Data Exchange (ETDEWEB)

    El Aissi, Radhia [National Centre of Sciences and Nuclear Technology, Sidi Thabet (Tunisia). Radiopharmaceutical Unit; CNRS, Laboratoire de Synthese et Physico-Chimie de Molecules d' Interet Biologique, SPCMIB, UMR 5068, Toulouse (France); Toulouse Univ., UPS, Laboratoire de Synthese et Physico-Chimie de Molecules d' Interet Biologique, SPCMIB, UMR 5068, Toulouse (France); Malek-Saied, Nadia; Saidi, Mouldi [National Centre of Sciences and Nuclear Technology, Sidi Thabet (Tunisia). Radiopharmaceutical Unit; Mallet-Ladeira, Sonia [Toulouse Univ., UPS et CNRS, FR2599 (France). Inst. de Chimie de Toulouse; Coulais, Yvon [Toulouse Univ. (France). Lab. ' ' Traceurs et traitement de l' image' ' ; Benoist, Eric [CNRS, Laboratoire de Synthese et Physico-Chimie de Molecules d' Interet Biologique, SPCMIB, UMR 5068, Toulouse (France); Toulouse Univ., UPS, Laboratoire de Synthese et Physico-Chimie de Molecules d' Interet Biologique, SPCMIB, UMR 5068, Toulouse (France)

    2015-05-01

    The synthesis, characterization and biological evaluation of five neutral and lipophilic {sup 99m}Tc-complexes, so-called cytectrenes, obtained from N-substitutedferrocenecarboxamide derivatives are reported. N-substituted ferrocenecarboxamide starting materials were obtained in two steps, with good yield and were fully characterized by classical spectroscopic methods including X-ray diffraction analysis for one of them. Using a microwave strategy for the {sup 99m}Tc-radiolabelling step, each cytectrene were obtained quickly (radiolabelling time < 5 min), from modest to good yield. The {sup 99m}Tc-complexes, characterized by HPLC comparison with cold rhenium complex analogues, are stable, neutral and lipophilic (logP{sub o/w} ranged between 1.8 and 2.9). Unfortunately, despite such suitable features, in vivo studies of two of them gave poor results, in terms of brain uptake. Both radiocompounds exhibited the maximum brain accumulation of 0.31% ID/g and 0.26% ID/g at 5 min post-injection, respectively, followed by a very fast washout from the brain (0.06% ID/g and 0.07% ID/g at 30 min post-injection, respectively). Although our ligand systems exhibited high stability against exchange reactions with blood proteins, the high radioactivity level in stomach, increasing with time, suggests in vivo decomposition of our complex to pertechnetate.

  3. New neutral and lipophilic technetium complexes based on a cytectrene moiety. Synthesis, characterization and biological evaluation

    International Nuclear Information System (INIS)

    The synthesis, characterization and biological evaluation of five neutral and lipophilic 99mTc-complexes, so-called cytectrenes, obtained from N-substitutedferrocenecarboxamide derivatives are reported. N-substituted ferrocenecarboxamide starting materials were obtained in two steps, with good yield and were fully characterized by classical spectroscopic methods including X-ray diffraction analysis for one of them. Using a microwave strategy for the 99mTc-radiolabelling step, each cytectrene were obtained quickly (radiolabelling time < 5 min), from modest to good yield. The 99mTc-complexes, characterized by HPLC comparison with cold rhenium complex analogues, are stable, neutral and lipophilic (logPo/w ranged between 1.8 and 2.9). Unfortunately, despite such suitable features, in vivo studies of two of them gave poor results, in terms of brain uptake. Both radiocompounds exhibited the maximum brain accumulation of 0.31% ID/g and 0.26% ID/g at 5 min post-injection, respectively, followed by a very fast washout from the brain (0.06% ID/g and 0.07% ID/g at 30 min post-injection, respectively). Although our ligand systems exhibited high stability against exchange reactions with blood proteins, the high radioactivity level in stomach, increasing with time, suggests in vivo decomposition of our complex to pertechnetate.

  4. A perspective on plant origin radiolabeled compounds, their biological affinities and interaction between plant extracts with radiopharmaceuticals

    International Nuclear Information System (INIS)

    Plant origin products having anticancer properties come into prominence due to widespread of cancer. There is significant increase on the usage of plant origin products and their purification to investigate the potential use at the treatment and diagnosis. Plant origin radiolabeled compounds have been attracting more scientific attention since the achievement of earlier researches. Furthermore, plant extracts are consumed quite a lot with unknown side effects of their contents. Researchers focus on investigation of their interactions with radiopharmaceuticals. Current review is carried out to evaluate the contribution of plant extracts for the development of new plant origin radiolabeled (125/131I, 99mTc) compounds for imaging and/or therapy and to investigate the interaction of plant extracts with radiopharmaceuticals. (author)

  5. Laboratory LiF characterization of different phytoplankton species originating harmful blooms

    Energy Technology Data Exchange (ETDEWEB)

    Barbini, R.; Colao, F.; Fantoni, R.; Palucci, A.; Ribezzo, S. [ENEA, Centro Ricerche Frascati, Rome (Italy). Dip. Innovazione; Micheli, C. [ENEA, Centro Ricerche Casaccia, Rome (Italy). Dipt. Innovazione

    1997-11-01

    A systematic laboratory characterization of different phytoplankton cultures has been performed in combination with LiF (Laser Induced Fluorescence) measurements aimed to investigate the possibility of their remote monitoring by means of lidar fluoro sensor systems. Cultures of microalgae characterized by different pigment contents have been analyzed in the visible region upon UV laser excitation. High resolution laboratory spectra have been measured in order to obtain the fingerprint of each species. Emission wavelength related to the main pigments contribution have been identified. Detection limits of the emitted red chlorophyll signal have been evaluated for the different species after dilution in the culture medium and in real sea water. Prior to the LiF excitation aimed to the remote characterization the algal cultures were morphologically analyzed by fluorescence and scanning electron microscopy. Furthermore the relevant cell number was counted for biomass estimation, and the chlorophylls content was determined by different chemical methods.

  6. Characterization and biological activities of two copper(II) complexes with dipropylenetriamine and diamine as ligands

    Science.gov (United States)

    AL-Noaimi, Mousa; Choudhary, Mohammad I.; Awwadi, Firas F.; Talib, Wamidh H.; Hadda, Taibi Ben; Yousuf, Sammer; Sawafta, Ashraf; Warad, Ismail

    2014-06-01

    Two new mixed-ligand copper(II) complexes, [Cu(dipn)(Nsbnd N)]Br2(1-2) [dipn = dipropylenetriamine, Nsbnd N = ethylenediamine (en) (1) and propylenediamine (pn) (2)], have been synthesized. These complexes were characterized by spectroscopic and thermal techniques. Crystal structure for 2 shows a distorted trigonal-bipyramidal geometry around Cu(II) ion with one solvate water molecule. Antimicrobial and antiproliferative assays were conducted to evaluate the biological activities of these complexes. The complexes exhibit a promising antimicrobial effect against an array of microbes at 200 μg/mL concentration. The antiproliferative assay shows a high potential of these complexes to target Human keratinocyte cell line with IC50 values of 155 and 152 μM. The absorption spectrum of 2 in water was modeled by time-dependent density functional theory (TD-DFT).

  7. Testing and characterization of a biologically-inspired first-order directional MEMS microphone

    Science.gov (United States)

    Antonelli, Daniel

    First-order directional microphones have a response that is proportional to the spatial gradient of sound pressure. The overall response, however, will also be influenced by the average sound pressure acting on the microphone diaphragm. For directional microphones to exhibit the desired first-order figure-8 directivity pattern, the response must be dominated by the pressure gradient rather than the pressure. A testing process has been developed to characterize the acoustic response of a biologically-inspired first-order directional MEMS microphone by separating the total measured response into the response due to the spatial average of the pressure and the response due to pressure gradient. Understanding how the pressure and pressure gradient of a sound field separately influence the overall behavior of this class of microphone is critical to assessing their performance. An experimental test setup and data processing algorithms have been developed which are shown to successfully achieve these goals.

  8. Transition metal complexes of some biologically active ligands; synthesis characterization and bioactivities

    International Nuclear Information System (INIS)

    Transition/representative transition metals complexes of biologically active chelating agent 1,2-dipyrolodinoethane were synthesized and characterized through spectral and analytical data. The complexes are of the formula (M(L)X/sub 2/). Where (M = Co (II), Ni (II), Cu (II), Zn (II), Hg (II) and Cd (II) and X = CI, Br, NO/sub 3/). Tetrahedral geometry has been proposed to these-metal complexes with the help of magnetic measurements, elemental analysis, chemical stoichiometry and spectroscopic data Antibacterial activity of the ligand and its metal complexes were screened against Eschereschi coli, Klebsiello pneumonia, Proteus mirabilis, Proteus vulhari, Streptococcus pneumonia, Salmonella Iyphi, Bacilh,s anthrax, Streptococcus fecalis and Staphylococcus aureus. Complexes were found to be active against Eschereschi coli, Klebsiella pneumonia, Proteus mirabilis and Proteus vulharis. (author)

  9. Synthesis, characterization and biological studies of a charge transfer complex: 2-Aminopyridinium-4-methylbenzenesulfonate

    Science.gov (United States)

    Vadivelan, Ganesan; Saravanabhavan, Munusamy; Murugesan, Venkatesan; Sekar, Marimuthu

    2015-06-01

    A single crystal charge transfer (CT) complex, 2-aminopyridinium-4-methylbenzenesulfonate (APTS) was synthesized and recrystallized by slow solvent evaporation solution growth method at room temperature. The complex has been characterized with the elemental analysis, UV-visible, infrared (IR), 1H and 13C nuclear magnetic resonance (NMR) spectra. Thermogravimetric (TG) and differential thermal analysis (DTA) were reported the thermal behaviour of the complex. Single crystal XRD studies showed that the orthorhombic nature of the crystal with space group Pbca. The biological activities of CT complex, such as DNA binding and antioxidant activity has been carried out. The results indicated that the compound could interact with DNA through intercalation and show significant capacity of scavenging with 2,2-diphenyl-2-picryl-hydrazyl (DPPH).

  10. Biologically active collagen-based scaffolds: advances in processing and characterization.

    Science.gov (United States)

    Yannas, I V; Tzeranis, D S; Harley, B A; So, P T C

    2010-04-28

    A small number of type I collagen-glycosaminoglycan scaffolds (collagen-GAG scaffolds; CGSs) have unusual biological activity consisting primarily in inducing partial regeneration of organs in the adult mammal. Two of these are currently in use in a variety of clinical settings. CGSs appear to induce regeneration by blocking the adult healing response, following trauma, consisting of wound contraction and scar formation. Several structural determinants of biological activity have been identified, including ligands for binding of fibroblasts to the collagen surface, the mean pore size (which affects ligand density) and the degradation rate (which affects the duration of the wound contraction-blocking activity by the scaffold). Processing variables that affect these determinants include the kinetics of swelling of collagen fibres in acetic acid, freezing of the collagen-GAG suspension and cross-linking of the freeze-dried scaffold. Recent developments in the processing of CGSs include fabrication of scaffolds that are paucidisperse in pore size, scaffolds with gradients in physicochemical properties (and therefore biological activity) and scaffolds that incorporate a mineral component. Advances in the characterization of the pore structure of CGSs have been made using confocal and nonlinear optical microscopy (NLOM). The mechanical behaviour of CGSs, as well as the resistance to degradative enzymes, have been studied. Following seeding with cells (typically fibroblasts), contractile forces in the range 26-450 nN per cell are generated by the cells, leading to buckling of scaffold struts. Ongoing studies of cell-seeded CGSs with NLOM have shown an advantage over the use of confocal microscopy due to the ability of the former method to image the CGS surfaces without staining (which alters its surface ligands), reduced cell photodamage, reduced fluorophore photobleaching and the ability to image deeper inside the scaffold. PMID:20308118

  11. Efficient characterization of high-dimensional parameter spaces for systems biology

    Directory of Open Access Journals (Sweden)

    Hafner Marc

    2011-09-01

    Full Text Available Abstract Background A biological system's robustness to mutations and its evolution are influenced by the structure of its viable space, the region of its space of biochemical parameters where it can exert its function. In systems with a large number of biochemical parameters, viable regions with potentially complex geometries fill a tiny fraction of the whole parameter space. This hampers explorations of the viable space based on "brute force" or Gaussian sampling. Results We here propose a novel algorithm to characterize viable spaces efficiently. The algorithm combines global and local explorations of a parameter space. The global exploration involves an out-of-equilibrium adaptive Metropolis Monte Carlo method aimed at identifying poorly connected viable regions. The local exploration then samples these regions in detail by a method we call multiple ellipsoid-based sampling. Our algorithm explores efficiently nonconvex and poorly connected viable regions of different test-problems. Most importantly, its computational effort scales linearly with the number of dimensions, in contrast to "brute force" sampling that shows an exponential dependence on the number of dimensions. We also apply this algorithm to a simplified model of a biochemical oscillator with positive and negative feedback loops. A detailed characterization of the model's viable space captures well known structural properties of circadian oscillators. Concretely, we find that model topologies with an essential negative feedback loop and a nonessential positive feedback loop provide the most robust fixed period oscillations. Moreover, the connectedness of the model's viable space suggests that biochemical oscillators with varying topologies can evolve from one another. Conclusions Our algorithm permits an efficient analysis of high-dimensional, nonconvex, and poorly connected viable spaces characteristic of complex biological circuitry. It allows a systematic use of robustness as

  12. Biological synthesis and characterization of intracellular gold nanoparticles using biomass of Aspergillus fumigatus

    Indian Academy of Sciences (India)

    Pranav Vasanthi Bathrinarayanan; Dilliganesh Thangavelu; Vasanth Kumar Muthukumarasamy; Chamundeeswari Munusamy; Baskar Gurunathan

    2013-12-01

    Nanotechnology is emerging as one of the most important and revolutionizing area in research field. Nanoparticles are produced by various methods like physical, chemical, mechanical and biological. Biological methods of reduction of metal ions using plants or microorganisms are often preferred because they are clean, nontoxic, safe, biocompatible and environmentally acceptable. In the present study, Aspergillus fumigatus was used for the intracellular synthesis of gold nanoparticles. Stable nanoparticles were produced when an aqueous solution of chloroauric acid (HAuCl4) was reduced by A. fumigatus biomass as the reducing agent. Production of nanoparticles was confirmed by the colour change from yellow to pinkish violet after ∼72 h of reaction. The produced nanoparticles were then characterized by Fourier transform infrared spectroscopy (FT–IR), scanning electron microscope (SEM), energy dispersive spectroscopy (EDS) and X-ray diffraction spectroscopy (XRD). SEM images of sample revealed that the nanoparticles were spherical, irregularly shaped with indefinite morphology. Biosynthesized gold nanoparticles were in the range of 85.1–210 nm in size. The presence of gold nanoparticle was confirmed by EDS analysis. Crystalline nature and face-centred cubic structure of synthesized gold nanoparticle was confirmed by XRD pattern.

  13. A bottom-up characterization of transfer functions for synthetic biology designs: lessons from enzymology.

    Science.gov (United States)

    Carbonell-Ballestero, Max; Duran-Nebreda, Salva; Montañez, Raúl; Solé, Ricard; Macía, Javier; Rodríguez-Caso, Carlos

    2014-12-16

    Within the field of synthetic biology, a rational design of genetic parts should include a causal understanding of their input-output responses-the so-called transfer function-and how to tune them. However, a commonly adopted strategy is to fit data to Hill-shaped curves without considering the underlying molecular mechanisms. Here we provide a novel mathematical formalization that allows prediction of the global behavior of a synthetic device by considering the actual information from the involved biological parts. This is achieved by adopting an enzymology-like framework, where transfer functions are described in terms of their input affinity constant and maximal response. As a proof of concept, we characterize a set of Lux homoserine-lactone-inducible genetic devices with different levels of Lux receptor and signal molecule. Our model fits the experimental results and predicts the impact of the receptor's ribosome-binding site strength, as a tunable parameter that affects gene expression. The evolutionary implications are outlined. PMID:25404136

  14. Characterization and biological effect of Buenos Aires urban air particles on mice lungs

    International Nuclear Information System (INIS)

    Exposure to increased levels of ambient air particulate matter (PM) is associated with increased cardiopulmonary morbidity and mortality. Its association with adverse health effects and the still unclear mechanisms of action are of concern worldwide. Our objective was to analyze air PM from downtown Buenos Aires (UAP-BA), and evaluate its biological impact on normal airways. We studied the inflammatory response to intranasal instillation of UAP-BA in a short-term-exposure mouse model. We analyzed UAP-BA morphology by scanning electron microscopy and characterized particle chemical composition by energy dispersive X-ray analysis and capillary gas chromatography. We evaluated lung changes by histomorphometry and histochemical methods. Regarding size, surface area and distribution, UAP-BA proved to be small spherical ultrafine particles: free, in clusters and associated to a matrix. The particles contained polycyclic aromatic hydrocarbons, polychlorinated biphenyls and almost no metal traces. Histologically, UAP-BA induced the recruitment of phagocytes, a reduction in air spaces, an increase in mucous PAS positive cells and weak incomplete elastic fiber network. Our results demonstrate that UAP-BA causes adverse biological effects on the respiratory tract generating inflammation that, in turn, may cause tissue injury or organ dysfunction and may contribute to the pathogenesis of lung diseases

  15. Characterization of Botanical and Geographical Origin of Corsican “Spring” Honeys by Melissopalynological and Volatile Analysis

    Directory of Open Access Journals (Sweden)

    Yin Yang

    2014-01-01

    Full Text Available Pollen spectrum, physicochemical parameters and volatile fraction of Corsican “spring” honeys were investigated with the aim of developing a multidisciplinary method for the qualification of honeys in which nectar resources are under-represented in the pollen spectrum. Forty-one Corsican “spring” honeys were certified by melissopalynological analysis using directory and biogeographical origin of 50 representative taxa. Two groups of honeys were distinguished according to the botanical origin of samples: “clementine” honeys characterized by the association of cultivated species from oriental plain and other “spring” honeys dominated by wild herbaceous taxa from the ruderal and/or maquis area. The main compounds of the “spring” honey volatile fraction were phenylacetaldehyde, benzaldehyde and methyl-benzene. The volatile composition of “clementine” honeys was also characterized by three lilac aldehyde isomers. Statistical analysis of melissopalynological, physicochemical and volatile data showed that the presence of Citrus pollen in “clementine” honeys was positively correlated with the amount of linalool derivatives and methyl anthranilate. Otherwise, the other “spring” honeys were characterized by complex nectariferous species associations and the content of phenylacetaldehyde and methyl syringate.

  16. The use of stable isotopes for the characterization of honeys, their origin and adulteration

    International Nuclear Information System (INIS)

    In general, plants used by bees as nectar sources belong to the C3-typ of photosynthetic CO2-fixation. As a consequence, honey mostly shows the delta13C-values of C3-plants. Addition of cane-sugar or corn-products ('isomerose syrup' or 'apireve') to the honey (or feeding these substances to bees) would change this delta13C-value. This allows a sensitive proof for the absence of such additions. The deltaD-values in the dry substance of honey may be used in special cases to identify the geographic origin of the honey

  17. Synthesis, spectroscopic characterization, biological screenings, DNA binding study and POM analyses of transition metal carboxylates

    Science.gov (United States)

    Uddin, Noor; Sirajuddin, Muhammad; Uddin, Nizam; Tariq, Muhammad; Ullah, Hameed; Ali, Saqib; Tirmizi, Syed Ahmed; Khan, Abdur Rehman

    2015-04-01

    This article contains the synthesis of a novel carboxylic acid derivative, its transition metal complexes and evaluation of biological applications. Six carboxylate complexes of transition metals, Zn(II) and Hg(II), have been successfully synthesized and characterized by FT-IR and NMR (1H, 13C). The ligand, HL, (4-[(2,6-Diethylphenyl)amino]-4-oxobutanoic acid) was also characterized by single crystal X-ray analysis. The complexation occurs via oxygen atoms of the carboxylate moiety. FT-IR date show the bidentate nature of the carboxylate moiety of the ligand as the Δν value in all complexes is less than that of the free ligand. The ligand and its complexes were screened for antifungal and antileishmanial activities. The results showed that the ligand and its complexes are active with few exceptions. UV-visible spectroscopy and viscometry results reveal that the ligand and its complexes interact with the DNA via intercalative mode of interaction. A new and efficient strategy to identify the pharmacophores and anti-pharmacophores sites in carboxylate derivatives for the antibacterial/antifungal activity using Petra, Osiris and Molinspiration (POM) analyses was also carried out.

  18. Identification and Characterization of Lysobacter enzymogenes as a Biological Control Agent Against Some Fungal Pathogens

    Institute of Scientific and Technical Information of China (English)

    QIAN Guo-liang; HU Bai-shi; JIANG Ying-hua; LIU Feng-quan

    2009-01-01

    Strain OH11, a Gram-negative, nonspore forming, rod-shaped bacterium with powerful antagonistic activity, was isolated from rhizosphere of green pepper in Jiangsu Academy of Agricultural Sciences of China and characterized to determine its taxonomic position. 16S rRNA gene sequence analysis revealed that strain OH11 belongs to the Gammaproteobacteria and had the highest degree of sequence similarity to Lysobacter enzymogenes strain C3 (AY074793) (99%), Lysobacter enzyrnogenes strain N4-7 (U89965) (99%), Lysobacter antibioticus strain (AB019582) (97%), and Lysobacter gummosus strain (AB16136) (97%). Chemotaxonomic data revealed that strain OH11 possesses a quinine system with Q-8 as the predominant compound and C15:0 iso,C17:1 iso w9c as the predominant iso-branched fatty acids,all of which corroborated the assignment of strain OH11 to the genus Lysobacter. Results of DNA-DNA hybridization and physiological and biochemical tests clearly showed that strain OH11 was classified as Lysobacter enzymogenes. Strain OH11 could produce protease, chitinase, and β-1,3-glucanase. It showed strong in vitro antifungal activity against Rhizoctonia solani, Sclerotinia scletotiorum, and several other phytopathogenic fungi. This is the first report of identification and characterization of Lysobacter enzymogenes as a biological control agent of plant diseases in China.

  19. Biological characterization of fusapyrone and deoxyfusapyrone, two bioactive secondary metabolites of Fusarium semitectum.

    Science.gov (United States)

    Altomare, C; Perrone, G; Zonno, M C; Evidente, A; Pengue, R; Fanti, F; Polonelli, L

    2000-08-01

    Fusapyrone (1) and deoxyfusapyrone (2), two alpha-pyrones originally isolated from rice cultures of Fusarium semitectum, were tested in several biological assays. Compounds 1 and 2 showed considerable antifungal activity against several plant pathogenic and/or mycotoxigenic filamentous fungi, although they were inactive toward yeasts isolated from plants and the Gram-positive bacterium Bacillus megaterium in disk diffusion assays. Compound 1 was consistently more active than 2. Among the tested fungi, Fusarium species were the least sensitive to the two pyrones, while Alternaria alternata, Ascochyta rabiei, Aspergillusflavus, Botrytis cinerea, Cladosporium cucumerinum, Phoma tracheiphila, and Penicillium verrucosum were the most sensitive. Compounds 1 and 2 also showed good inhibitory activity toward agents of human mycoses. Aspergilli were the most sensitive, while some species-specific variability was found among the Candida spp. In an Artemia salina larvae bioassay, 1 was not toxic at the highest concentration tested (500 microM), whereas the LC(50) of 2 was 37.1 microM (21.8 microg/mL). Neither 1 nor 2 was phytotoxic in a panel of assays that monitored plant-cell toxicity, as well as wilt-, chlorosis-, and necrosis-inducing activity. Moreover, 2 stimulated the root elongation of tomato seedlings at doses of 10 and 100 microM. In consideration of the biological activities evidenced in this study, 1 and 2 appear to be potential candidates for biotechnological applications, as well as good models for studies on mechanism(s) of action and structure-activity relationships. PMID:10978211

  20. Characterization of Size, Composition and Origins of Dust in Fusion Devices. Summary Report of the Third Research Coordination Meeting

    International Nuclear Information System (INIS)

    Twelve experts on processes of dust in fusion experiments met at IAEA Headquarters 30 November - 02 December 2011 for the 3rd Research Coordination Meeting (RCM) of the Coordinated Research Project (CRP) on ''Characterization of size, composition and origins of dust in fusion devices.'' Participants reviewed their work done in the course of the CRP and the current state of knowledge, and they made plans for a dust database and a final CRP report. Presentations, discussions and recommendations of the RCM are summarized here. (author)

  1. The origin of Cretan populations as determined by characterization of HLA alleles.

    Science.gov (United States)

    Arnaiz-Villena, A; Iliakis, P; González-Hevilla, M; Longás, J; Gómez-Casado, E; Sfyridaki, K; Trapaga, J; Silvera-Redondo, C; Matsouka, C; Martínez-Laso, J

    1999-03-01

    The Cretan HLA gene profile has been compared with those of other Mediterranean populations in order to provide additional information regarding the history of their origins. The allele frequencies, genetic distances between populations, relatedness dendrograms and correspondence analyses were calculated. Our results indicate that the Indoeuropean Greeks may be considered as a Mediterranean population of a more recent origin (after 2000 B.C.), while all other studied Mediterraneans (including Cretans) belong to an older substratum which was present in the area since pre-Neolithic times. A significant Turkish gene flow has not been detected in the Greek or Cretan populations, although Greeks and Turks have two high frequency HLA-DRB-DQB haplotypes in common. It is proposed that Imazighen (Caucasoid Berbers living at present in the North African coast and Saharan areas) are the remains of pre-Neolithic Saharan populations which could emigrate northwards between about 8000-6000 B.C., when desert desiccation began. They also could be part of the stock that gave rise to Sumerians, Cretans and Iberians; this is supported by both linguistic and HLA genetic data. PMID:10203014

  2. Laboratory-generated mixtures of mineral dust particles with biological substances: characterization of the particle mixing state and immersion freezing behavior

    Science.gov (United States)

    Augustin-Bauditz, Stefanie; Wex, Heike; Denjean, Cyrielle; Hartmann, Susan; Schneider, Johannes; Schmidt, Susann; Ebert, Martin; Stratmann, Frank

    2016-05-01

    Biological particles such as bacteria, fungal spores or pollen are known to be efficient ice nucleating particles. Their ability to nucleate ice is due to ice nucleation active macromolecules (INMs). It has been suggested that these INMs maintain their nucleating ability even when they are separated from their original carriers. This opens the possibility of an accumulation of such INMs in soils, resulting in an internal mixture of mineral dust and INMs. If particles from such soils which contain biological INMs are then dispersed into the atmosphere due to wind erosion or agricultural processes, they could induce ice nucleation at temperatures typical for biological substances, i.e., above -20 up to almost 0 °C, while they might be characterized as mineral dust particles due to a possibly low content of biological material. We conducted a study within the research unit INUIT (Ice Nucleation research UnIT), where we investigated the ice nucleation behavior of mineral dust particles internally mixed with INM. Specifically, we mixed a pure mineral dust sample (illite-NX) with ice active biological material (birch pollen washing water) and quantified the immersion freezing behavior of the resulting particles utilizing the Leipzig Aerosol Cloud Interaction Simulator (LACIS). A very important topic concerning the investigations presented here as well as for atmospheric application is the characterization of the mixing state of aerosol particles. In the present study we used different methods like single-particle aerosol mass spectrometry, Scanning Electron Microscopy (SEM), Energy Dispersive X-ray analysis (EDX), and a Volatility-Hygroscopicity Tandem Differential Mobility Analyser (VH-TDMA) to investigate the mixing state of our generated aerosol. Not all applied methods performed similarly well in detecting small amounts of biological material on the mineral dust particles. Measuring the hygroscopicity/volatility of the mixed particles with the VH-TDMA was the most

  3. MASSIF-1: a beamline dedicated to the fully automatic characterization and data collection from crystals of biological macromolecules

    Energy Technology Data Exchange (ETDEWEB)

    Bowler, Matthew W., E-mail: mbowler@embl.fr [European Molecular Biology Laboratory, Grenoble Outstation, 71 avenue des Martyrs, F-38042 Grenoble (France); Université Grenoble Alpes-EMBL-CNRS, 71 avenue des Martyrs, F-38042 Grenoble (France); Nurizzo, Didier, E-mail: mbowler@embl.fr; Barrett, Ray; Beteva, Antonia; Bodin, Marjolaine [European Synchrotron Radiation Facility, 71 avenue des Martyrs, F-38043 Grenoble (France)

    2015-10-03

    MASSIF-1 (ID30A-1) is a new beamline dedicated to the completely automatic characterization and data collection from crystals of biological macromolecules. MASSIF-1 (ID30A-1) is an ESRF undulator beamline operating at a fixed wavelength of 0.969 Å (12.8 keV) that is dedicated to the completely automatic characterization of and data collection from crystals of biological macromolecules. The first of the ESRF Upgrade MASSIF beamlines to be commissioned, it has been open since September 2014, providing a unique automated data collection service to academic and industrial users. Here, the beamline characteristics and details of the new service are outlined.

  4. MASSIF-1: a beamline dedicated to the fully automatic characterization and data collection from crystals of biological macromolecules

    International Nuclear Information System (INIS)

    MASSIF-1 (ID30A-1) is a new beamline dedicated to the completely automatic characterization and data collection from crystals of biological macromolecules. MASSIF-1 (ID30A-1) is an ESRF undulator beamline operating at a fixed wavelength of 0.969 Å (12.8 keV) that is dedicated to the completely automatic characterization of and data collection from crystals of biological macromolecules. The first of the ESRF Upgrade MASSIF beamlines to be commissioned, it has been open since September 2014, providing a unique automated data collection service to academic and industrial users. Here, the beamline characteristics and details of the new service are outlined

  5. Absorption and biological half-life in humans of intrinsic and extrinsic 54Mn tracers from foods of plant origin

    International Nuclear Information System (INIS)

    Absorption and biological half-life of 54Mn were measured in adult men and women fed foods labeled intrinsically or extrinsically with 54Mn. Each subject consumed a series of three test meals consisting of a food labeled intrinsically, a food labeled extrinsically or MnCl2 (control) served in random order. The foods tested were lettuce, spinach, wheat and sunflower seeds. Lettuce meals and their controls contained 9.65 mumol Mn; other meals contained 22.50 mumol Mn. In addition to the test food or MnCl2, each meal consisted of vegetable oil (5 g), salt (NaCl, 0.15 g) and crackers (10 g), which provided 0.55 mumol Mn. There were no differences in percentage of Mn absorption or biological half-life of 54Mn for any of the intrinsically/extrinsically labeled food pairs. Absorption of 54Mn from MnCl2 (8.90%) was greater than from lettuce (5.20%), spinach (3.81%), wheat (2.16%) or sunflower seeds (1.71%), but the biological half-life did not vary with the source of Mn. Absorption of 54Mn from lettuce was significantly (P less than 0.05) greater than from wheat or sunflower seeds. Although the Mn dose in the test meal was less for lettuce than for the other foods, there was no difference in Mn absorption from MnCl2 between the subjects fed lettuce and subjects fed other foods. There was no correlation of either 54Mn absorption or biological half-life with whole blood or plasma Mn

  6. Critical tests for determination of microbiological quality and biological activity in commercial vermicompost samples of different origins.

    Science.gov (United States)

    Grantina-Ievina, Lelde; Andersone, Una; Berkolde-Pīre, Dace; Nikolajeva, Vizma; Ievinsh, Gederts

    2013-12-01

    The aim of the present paper was to show that differences in biological activity among commercially produced vermicompost samples can be found by using a relatively simple test system consisting of microorganism tests on six microbiological media and soilless seedling growth tests with four vegetable crop species. Significant differences in biological properties among analyzed samples were evident both at the level of microbial load as well as plant growth-affecting activity. These differences were mostly manufacturer- and feedstock-associated, but also resulted from storage conditions of vermicompost samples. A mature vermicompost sample that was produced from sewage sludge still contained considerable number of Escherichia coli. Samples from all producers contained several potentially pathogenic fungal species such as Aspergillus fumigatus, Pseudallescheria boidii, Pseudallescheria fimeti, Pseudallescheria minutispora, Scedosporium apiospermum, Scedosporium prolificans, Scopulariopsis brevicaulis, Stachybotrys chartarum, Geotrichum spp., Aphanoascus terreus, and Doratomyces columnaris. In addition, samples from all producers contained plant growth-promoting fungi from the genera Trichoderma and Mortierella. The described system can be useful both for functional studies aiming at understanding of factors affecting quality characteristics of vermicompost preparations and for routine testing of microbiological quality and biological activity of organic waste-derived composts and vermicomposts. PMID:23504062

  7. Isolation, identification, and characterization of Listeria spp. from various animal origin foods

    Directory of Open Access Journals (Sweden)

    Deepti N. Nayak

    2015-06-01

    Full Text Available Aim: The present study was undertaken with the prime objective of isolating and identifying Listeria spp. from various foods of animal origin sold at retail market outlets in the city of Navsari, Gujarat. Materials and Methods: Total 200 samples comprising of milk, milk products, meat, and fish (50 each collected aseptically from local market which were subjected first to pre-enrichment in half strength Fraser broth followed by enrichment in full strength Fraser broth and subsequent plating on PALCAM agar. The growth with the typical colony characteristics were further identified up to species level on the basis of their morphological and biochemical characteristics. Cultures identified as Listeria monocytogenes were further subjected to in vitro pathogenicity tests and detection of different virulence associated genes viz. actA, hlyA, and iap using polymerase chain reaction. Results: Of the total 200 food samples of animal origin; 18 (9% were found positive for Listeria spp. which were identified as Listeria seeligeri (6, 33.3%, Listeria innocua (5, 27.7%, Listeria welshimeri (4, 22.2%, and L. monocytogenes (3, 16.6%. The highest prevalence was observed in milk samples (8. Species wise, 6 isolates of L. seeligeri which included two each from cow milk, buffalo milk, and meat samples; 5 L. innocua isolates included four recovered from fish and one from meat sample; 4 L. welshimeri comprised of two isolates from ice cream and one each from buffalo milk and meat sample; and 3 isolates of L. monocytogenes recovered from milk (1 cow and 2 buffalo milk. All 3 L. monocytogenes isolates screened for the presence of virulence genes viz. actA, hlyA, and iap using the specific primers revealed the presence of all the genes suggesting the possibility of danger of foodborne listeriosis among raw milk consumers. Conclusion: Listeria spp. was isolated from 9% (18/200 of the animal origin food samples viz.; milk, milk products, meat, and fish with the highest

  8. Characterization and possible origins of isolated douglas fir stands on the Colorado Plateau

    Energy Technology Data Exchange (ETDEWEB)

    Spence, J.R. [National Park Service, Page, AZ (United States)

    1995-09-01

    The floristic composition of several isolated stands of Pseudotsuga menziesii on the Colorado Plateau is compared. All occurred between 1700-2000 meters, which was about 300-500 meters below typical lower limits for the species. Most stands showed evidence of reproduction and recruitment. A small widespread group of species existed that was common to all stands, but beta diversity was high. A preliminary analysis of possible origins of the stands suggested that they are relictual from the late Wisconsin or early Holocene. Bird-dispersed species were less prevalent than expected compared with existing high elevation conifer forests. These stands represent important resources for Quaternary research, but are extremely vulnerable to human-caused disturbances. It is recommended that they be provided protection from disturbance through appropriate management activities of the various land management agencies.

  9. Characterization of carbon nanotubes and analytical methods for their determination in environmental and biological samples: A review

    International Nuclear Information System (INIS)

    Highlights: • Analytical techniques for characterization of CNTs: classification, description and examples. • Determination methods for CNTs in biological and environmental samples. • Future trends and perspectives for characterization and determination of CNTs. - Abstract: In the present paper, a critical overview of the most commonly used techniques for the characterization and the determination of carbon nanotubes (CNTs) is given on the basis of 170 references (2000–2014). The analytical techniques used for CNT characterization (including microscopic and diffraction, spectroscopic, thermal and separation techniques) are classified, described, and illustrated with applied examples. Furthermore, the performance of sampling procedures as well as the available methods for the determination of CNTs in real biological and environmental samples are reviewed and discussed according to their analytical characteristics. In addition, future trends and perspectives in this field of work are critically presented

  10. Characterization of carbon nanotubes and analytical methods for their determination in environmental and biological samples: A review

    Energy Technology Data Exchange (ETDEWEB)

    Herrero-Latorre, C., E-mail: carlos.herrero@usc.es; Álvarez-Méndez, J.; Barciela-García, J.; García-Martín, S.; Peña-Crecente, R.M.

    2015-01-01

    Highlights: • Analytical techniques for characterization of CNTs: classification, description and examples. • Determination methods for CNTs in biological and environmental samples. • Future trends and perspectives for characterization and determination of CNTs. - Abstract: In the present paper, a critical overview of the most commonly used techniques for the characterization and the determination of carbon nanotubes (CNTs) is given on the basis of 170 references (2000–2014). The analytical techniques used for CNT characterization (including microscopic and diffraction, spectroscopic, thermal and separation techniques) are classified, described, and illustrated with applied examples. Furthermore, the performance of sampling procedures as well as the available methods for the determination of CNTs in real biological and environmental samples are reviewed and discussed according to their analytical characteristics. In addition, future trends and perspectives in this field of work are critically presented.

  11. Identification and characterization of Biological risk objectives associated to Western Nile Fever in Sancti Spíritus municipality, Cuba.

    OpenAIRE

    Odmara M. Castellanos Yero; Omar F. López Rojas; Lizbet Domínguez Pérez

    2012-01-01

    This work was done in the whole Sancti Spíritus Municipality, The main objective was: to identify and to characterize the Biological Risk Objectives (BRO) in the Western Nile Fever. The sickness, the kind of risk, the localization and the characterization were taken as starting points of the investigation. According to the results, five BRO were identified: Zaza Dam, which constitutes a settlement of migratory birds; Alturas de Banao, Ecologic Reserve, crossed by the coast route of Atlantic, ...

  12. The Information Content of Visible Spectra of Extra Virgin Olive Oil in the Characterization of Its Origin

    International Nuclear Information System (INIS)

    The information content of visible spectra has been evaluated, by means of some selected chemometrical techniques, for its ability to trace the geographical origin of extra virgin olive oils coming from several Mediterranean regions. Special attention was paid to extra virgin olive oil produced in West Liguria, a North Italy region which leans over the Mediterranean Sea and borders France. The peculiar organoleptic features of this niche product deserved the protected designation of origin Riviera Ligure-Riviera dei fiori. Unfortunately, this expensive oil is often submitted to profitable adulterations, commonly involving addition of other cheaper Mediterranean oils. Using suitable transforms, such as profiles and derivatives, the visible spectra of extra virgin olive oils showed a very important discriminant power in that regards the geographical characterization of the studied samples. In particular, the developed class models for West Liguria oils have 100% sensitivity and specificity. Moreover, even if this paper is focused on West Liguria oil, it is important to emphasize that a similar study, involving a so widespread and timesaving technique, could be analogously developed for all the other Mediterranean regions taken into account and it could be used in other olive oil characterization problems

  13. Quantum dot agglomerates in biological media and their characterization by asymmetrical flow field-flow fractionation.

    Science.gov (United States)

    Moquin, Alexandre; Neibert, Kevin D; Maysinger, Dusica; Winnik, Françoise M

    2015-01-01

    The molecular composition of the biological environment of nanoparticles influences their physical properties and changes their pristine physicochemical identity. In order to understand, or predict, the interactions of cells with specific nanoparticles, it is critical to know their size, shape, and agglomeration state not only in their nascent state but also in biological media. Here, we use asymmetrical flow field-flow fractionation (AF4) with on-line multiangle light scattering (MALS), dynamic light scattering (DLS) and UV-Visible absorption detections to determine the relative concentration of isolated nanoparticles and agglomerates in the case of three types of semi-conductor quantum dots (QDs) dispersed in Dulbecco's Modified Eagle Media (DMEM) containing 10% of fetal bovine serum (DMEM-FBS). AF4 analysis also yielded the size and size distribution of the agglomerates as a function of the time of QDs incubation in DMEM-FBS. The preferred modes of internalization of the QDs are assessed for three cell-types, N9 microglia, human hepatocellular carcinoma cells (HepG2) and human embryonic kidney cells (Hek293), by confocal fluorescence imaging of live cells, quantitative determination of the intracellular QD concentration, and flow cytometry. There is an excellent correlation between the agglomeration status of the three types of QDs in DMEM-FBS determined by AF4 analysis and their preferred mode of uptake by the three cell lines, which suggests that AF4 yields an accurate description of the nanoparticles as they encounter cells and advocates its use as a means to characterize particles under evaluation. PMID:25542679

  14. Biological characterization of two xenografts derived from human CUPs (carcinomas of unknown primary)

    International Nuclear Information System (INIS)

    Carcinomas of unknown primary site (CUP) are epithelial malignancies revealed by metastatic lesions in the absence of any detectable primary tumor. Although they often adopt an aggressive clinical pattern, their basic biology remains poorly understood. Laboratory research on their biology have been hampered so far by the absence of cell lines representative of CUPs. We attempted xenografts of CUP clinical specimens in immunodeficient mice and subsequent in vitro culture of transplanted malignant cells. Whenever possible, malignant xenografted or cultured cells were characterized by microsatellite genotyping, immunohistology, electron microscopy, multifish chromosome analysis and search of TP 53 gene mutations. Successful xenografts were achieved in 2 cases out of 4. One of them (Capi1) was lost after 3 passages whereas the other one (Capi3) has been adapted to in vitro culture and is currently available to the scientific community with reliable identification based on microsatellite genotyping. Both Capi1 and Capi3 have histological characteristics of adenocarcinomas and display intense expression of EMA, CEA and cytokeratin 7. Multifish chromosome analysis demonstrated a translocation involving chromosomes 4 and 21 in both specimens. Distinct rare missense mutations of the TP53 gene were detected in Capi1 (codon 312) and Capi3 (codon 181); the codon 181 mutation is consistent with a previously reported similar finding in a small series of CUP specimens. Finally, intense membrane expression of c-kit was recorded in Capi3. Our data suggest that xenografted tumors can be obtained from a substantial fraction of CUP clinical specimens. The hypothesis of a preferential association of CUPs with TP 53 mutations of codon 181 deserves further investigations. The Capi3 cell line will be a useful tool for assessment of novel c-kit inhibitors

  15. Development of a novel monoclonal antibody to B7-H4: characterization and biological activity

    Directory of Open Access Journals (Sweden)

    Qian Y

    2011-07-01

    Full Text Available Abstract Objective B7-H4, a member of the B7 family of immunoregulatory receptors, may participate in the negative regulation of cell-mediated immunity. Aberrant B7-H4 expression is detected in some tumors and it plays a role in the occurrence and development of tumors. The aim of this study was to elucidate the functional and structural properties of B7-H4. Methods We developed a monoclonal antibody (mAb against the extracellular domain of B7-H4 through immunization of Balb/c mice with 3T3-mB7-H4 cells which expressed extrinsic B7-H4. A stable hybridoma cell line was established. Then, we analysised the characterization of the mAb through Enzyme linked immunosorbent assay (ELISA, Immunoprecipitation (IP, western blotting, Immunohistochemical (IHC, and tested the biological activity of the mAb. Results ELISA, IP, and western blotting analyses indicated that the mAb specifically recognized B7-H4. In addition, flow cytometry demonstrated that the mAb exhibits excellent reactivity when applied to leukemic cells. IHC staining revealed that the mAb stained in a predominantly diffuse plasmalemmal or cytoplasmic pattern when applied to certain tumor tissues. The preliminary results of the mAb's biological activity showed that the mAb could effectively inhibit the function of B7-H4 in the inhibition of T cell, while promotingg the growth of T cells and the secretion of Interleukin-2 (lL-2, Interleukin-4 (IL-4, Interleukin10 (IL-10 and Interferon-γ (IFN-γ. Conclusion This mAb will be a valuable tool for the further investigation of B7-H4 function.

  16. Biological characterization and partial purification of an idiotype and antigen specific T cell lymphokine

    International Nuclear Information System (INIS)

    An idiotype (Id) and antigen-specific T cell lymphokine has been partially purified and characterized biologically. This lymphokine appears to be derived from the T helper2 (Th2) lymphocyte and plays a key role in the optimal expression of the cross-reactive idiotype (CRI+-TMA) associated with both anti-phenyltrimethylammonium (TMA) and anti-trinitrophenyl (TNP) antibodies. An apparent molecular weight of 30-35 Kd was determined using molecular sieve chromatography. Upon SDS-polyacrylamide gel electrophoresis (SDS-PAGE) however, the biological activity migrated to 68 Kd as well as 35 Kd. Equivalent amounts of activity are found in both SDS-PAGE fractions. The Th2F has two isoelectric points, 5.7 and 6.3, although 99% of the activity is found at pH 6.3. The Id-enhancing factor is an acid stable and heat labile protein. As in the case for the expression of serum CRI-TMA, the production of the Th2F is linked to the allotype (Igh-1/sup e/) of the heavy chain locus. Using Con A Sns from various genetically distinct strains of mice, it has been shown that the production of the Th2F is allotype-linked, and works across major histocompatibility (MHC) barriers. Isolation of Th2F has been carried out using a combination of affinity chromatography and gel filtration. The partially purified material has been 125I labeled and analyzed by SDS-PAGE and flat bed isoelectric focusing. Two radiolabeled proteins which could be the Th2F were identified

  17. Characterization of free radical-induced base damage in DNA at biologically relevant levels

    International Nuclear Information System (INIS)

    DNA damage induced by oxygen radicals, e.g., hydroxyl radicals generated in living cells either by cellular metabolism or external agents such as ionizing radiations, appears to play an important role in mutagenesis, carcinogenesis, and aging. Elucidation of the chemical nature of such DNA lesions at biologically significant quantities is required for the assessment of their biological consequences and repair. For this purpose, a sensitive method using gas chromatography-mass spectrometry with the selected-ion-monitoring technique (GC-MS/SIM) was developed in the present work. DNA was exposed to hydroxyl radicals and hydrogen atoms produced by ionizing radiation in N2O-saturated aqueous solution. DNA samples were subsequently hydrolyzed with formic acid, trimethylsilylated, and analyzed by GC-MS/SIM. Characteristic ions from previously known mass spectra of DNA base products as their trimethylsilyl derivatives were recorded and the area counts of each ion were integrated. From these acquired data, a partial mass spectrum of each product was generated and then compared with those of authentic materials. This technique permitted the detection and characterization of a large number of free radical-induced based products of DNA, i.e., 5,6-dihydrothymine, 5-hydroxy-5,6-dihydrothymine, 5-hydroxymethyluracil, 5-hydroxyuracil, 5-hydroxycytosine, thymine glycol, 4,6-diamino-5-formamidopyrimidine, 8-hydroxyadenine, 2,6-diamino-4-hydroxy-5-formamidopyrimidine, and 8-hydroxyguanine, simultaneously in a single sample after radiation doses from 0.1 to 10 Gy. Detectable amounts of the base products were found to be as low as approximately 10 fmol per injection

  18. Characterization of DNA methylation and its association with other biological systems in lymphoblastoid cell lines

    Science.gov (United States)

    Zhang, Zhe; Liu, Jinglan; Kaur, Maninder; Krantz, Ian D.

    2016-01-01

    Lymphoblastoid cell line (LCL) is a common tool to study genetic disorders. However, it has not been fully characterized to what degree LCLs preserve the in vivo status of non-genetic biological systems, such as DNA methylation and gene transcription. We previously reported that DNA methylation in LCLs is highly variable in a data set of ~27,000 CpG dinucleotide sites around transcription start site (TSS) and 63 human subjects including healthy controls and probands of genetic disorders. Disease-causing mutations are linked to differential methylation at some CpG sites, but account for a small proportion of the total variance. In this study, we repeated the experiments to ensure that the high variance is not due to technical error and scrutinized the characteristics of DNA methylation and its association with other biological systems. Using sequence information and ChIP-seq data, we conclude that local CpG density and histone modifications not only correlate to baseline methylation level, but also affect the direction of methylation change in LCLs. Integrative analysis of gene transcription and DNA methylation data of the same subjects shows that medium or high methylation around TSS blocks the transcription while low methylation is a necessary, but not sufficient condition of downstream gene transcription. We utilized epigenetic information around TSS to predict active gene transcription via logistic regression models. The multivariate model using DNA methylation, eight histone modifications, and two regulatory protein complexes (CTCF and cohesin) as predictors has better performance (accuracy = 95.1%) than any univariate models of single predictors. Linear regression analysis further shows that the transcriptional levels predicted by epigenetic markers have significant correlation to microarray measurements (p = 2.2e-10). This study provides new insights into the epigenetic systems of LCLs and suggests that more specifically designed experiments are needed to

  19. Electrical, Thermal, and Magnetic Characterization of Natural Tetrahedrites-Tennantites of Different Origin

    Science.gov (United States)

    Levinsky, P.; Vaney, J.-B.; Candolfi, C.; Dauscher, A.; Lenoir, B.; Hejtmánek, J.

    2016-03-01

    Naturally occurring sulfosalt minerals of the tetrahedrite-tennantite series ((Cu,Fe,Zn,Ag,Hg)12(Sb,As)4S13) are studied because of their potential use as basic components in the manufacture of thermoelectric devices for moderate-temperature applications. In the work reported herein, the chemical, crystallographic, thermoelectric, and magnetic properties of four specimens from different ores from Europe and America were exhaustively characterized. Our study revealed that these natural tetrahedrites usually behave as low-to-moderately doped p-type semiconductors with low mobility. Their carrier charge transport is thus located at the edge between hopping and itinerant mechanisms. The magnetic study, probing the behavior of the constituent iron species, revealed that an insignificant part of the iron occurs as ferromagnetic impurities. The dominant iron species is Fe2+ ions with antiferromagnetic interactions. The maximum value of ZT observed was 0.13 at 700 K; this value is impaired, primarily, by high electrical resistivity.

  20. Rapid Purification and Characterization of Mutant Origin Recognition Complexes in Saccharomyces cerevisiae

    Science.gov (United States)

    Kawakami, Hironori; Ohashi, Eiji; Tsurimoto, Toshiki; Katayama, Tsutomu

    2016-01-01

    Purification of the origin recognition complex (ORC) from wild-type budding yeast cells more than two decades ago opened up doors to analyze the initiation of eukaryotic chromosomal DNA replication biochemically. Although revised methods to purify ORC from overproducing cells were reported later, purification of mutant proteins using these systems still depends on time-consuming processes including genetic manipulation to construct and amplify mutant baculoviruses or yeast strains as well as several canonical protein fractionations. Here, we present a streamlined method to construct mutant overproducers, followed by purification of mutant ORCs. Use of mammalian cells co-transfected with conveniently mutagenized plasmids bearing a His tag excludes many of the construction and fractionation steps. Transfection is highly efficient. All the six subunits of ORC are overexpressed at a considerable level and isolated as a functional heterohexameric complex. Furthermore, use of mammalian cells prevents contamination of wild-type ORC from yeast cells. The method is applicable to wild-type and at least three mutant ORCs, and the resultant purified complexes show expected biochemical activities. The rapid acquisition of mutant ORCs using this system will boost systematic biochemical dissection of ORC and can be even applied to the purification of protein complexes other than ORC. PMID:27148210

  1. Cutting-edge mass spectrometry characterization of originator, biosimilar and biobetter antibodies.

    Science.gov (United States)

    Beck, Alain; Debaene, François; Diemer, Hélène; Wagner-Rousset, Elsa; Colas, Olivier; Van Dorsselaer, Alain; Cianférani, Sarah

    2015-02-01

    The approval process for antibody biosimilars relies primarily on comprehensive analytical data to establish comparability and high similarity with the originator. Mass spectrometry (MS) in combination with liquid chromatography (LC) and electrophoretic methods are the corner stone for comparability and biosimilarity evaluation. In this special feature we report head-to-head comparison of trastuzumab and cetuximab with corresponding biosimilar and biobetter candidates based on cutting-edge mass spectrometry techniques such as native MS and ion-mobility MS at different levels (top, middle and bottom). In addition, we discuss the advantages and the limitations of sample preparation and enzymatic digestion, middle-up and -down strategies and the use of hydrogen/deuterium exchange followed by MS (HDX-MS). Last but not least, emerging separation methods combined to MS such as capillary zone electrophoresis-tandem MS (CESI-MS/MS), electron transfer dissociation (ETD), top down-sequencing (TDS) and high-resolution MS (HR-MS) that complete the panel of state-of-the-art MS-based options for comparability and biosimilarity evaluation are presented. PMID:25800010

  2. Characterization and application of two RANK-specific antibodies with different biological activities.

    Science.gov (United States)

    Chypre, Mélanie; Seaman, Jonathan; Cordeiro, Olga G; Willen, Laure; Knoop, Kathryn A; Buchanan, Andrew; Sainson, Richard C A; Williams, Ifor R; Yagita, Hideo; Schneider, Pascal; Mueller, Christopher G

    2016-03-01

    Antibodies play an important role in therapy and investigative biomedical research. The TNF-family member Receptor Activator of NF-κB (RANK) is known for its role in bone homeostasis and is increasingly recognized as a central player in immune regulation and epithelial cell activation. However, the study of RANK biology has been hampered by missing or insufficient characterization of high affinity tools that recognize RANK. Here, we present a careful description and comparison of two antibodies, RANK-02 obtained by phage display (Newa, 2014 [1]) and R12-31 generated by immunization (Kamijo, 2006 [2]). We found that both antibodies recognized mouse RANK with high affinity, while RANK-02 and R12-31 recognized human RANK with high and lower affinities, respectively. Using a cell apoptosis assay based on stimulation of a RANK:Fas fusion protein, and a cellular NF-κB signaling assay, we showed that R12-31 was agonist for both species. R12-31 interfered little or not at all with the binding of RANKL to RANK, in contrast to RANK-02 that efficiently prevented this interaction. Depending on the assay and species, RANK-02 was either a weak agonist or a partial antagonist of RANK. Both antibodies recognized human Langerhans cells, previously shown to express RANK, while dermal dendritic cells were poorly labeled. In vivo R12-31 agonist activity was demonstrated by its ability to induce the formation of intestinal villous microfold cells in mice. This characterization of two monoclonal antibodies should now allow better evaluation of their application as therapeutic reagents and investigative tools. PMID:26773232

  3. Genetic characterization of Toxoplasma gondii isolates in dogs from Vietnam suggests their South American origin.

    Science.gov (United States)

    Dubey, J P; Huong, Lam Thi Thu; Sundar, N; Su, C

    2007-05-31

    Dogs are considered a potential risk for transmission of Toxoplasma gondii to humans because they can mechanically transmit oocysts to people and in certain parts of the world dog meat is consumed by humans. The prevalence of T. gondii in 42 dogs from rural Vietnam was determined. Antibodies to T. gondii were assayed by the modified agglutination test, and found in 21 (50%) of 42 dogs with titers of 1:20 in six, 1:40 in seven, 1:80 in two, 1:160 in two, 1:320 in two, 1:640 in one, and 1:1280 or higher in one. Hearts, tongues and brains of 21 seropositive dogs were bioassayed in cats, mice or both. Tissues from eight seropositive dogs were fed to eight T. gondii-free cats. Feces of cats were examined for oocysts. T. gondii was isolated from eight dogs by bioassay in cats. Genotyping of these eight T. gondii isolates using polymorphisms at 10 nuclear markers including SAG1, SAG2, SAG3, BTUB, GRA6, c22-8, c29-2, L358, PK1 and a new SAG2, and an apicoplast marker Apico revealed two genotypes. Both genotypes were previously identified from the dog isolates in Colombia, suggesting their South America origin. However, they are different from the predominant Type I, II and III lineages that are widely spread in North America and Europe. This is the first report of isolation of viable T. gondii from any host in Vietnam. PMID:17442492

  4. SYNTHESIS, CHARACTERIZATION AND BIOLOGICAL ACTIVITY OF SOME NOVEL ARYL AND HETROARYL CHALCONE ANALOGUES

    OpenAIRE

    Tribhuvan Singh; R Lavanya; Srikanth Merugu; P.Sudhakar; Syeda Sana Yasmeen

    2012-01-01

    A new series of Heterocyclic chalcones showed diversified biological activities. In view of potential biological activities of Heterocyclic chalcones derivative were prepared by claisen-Schmidt condensation technique. The compound were screened for anti-inflammatory and antibacterial activity.

  5. Characterization of soluble microbial products in a drinking water biological aerated filter.

    Science.gov (United States)

    Kang, Jia; Ma, Teng-Fei; Zhang, Peng; Gao, Xu; Chen, You-Peng

    2016-05-01

    Utilization-associated products (UAPs) and biomass-associated products (BAPs) were quantified separately in this study to characterize soluble microbial products (SMPs) in a drinking water lab-scale biological aerated filter (BAF), and their basic characteristics were explored using gel filtration chromatography and three-dimensional excitation-emission matrix (3D-EEM) spectrophotometry with fluorescence regional integration analysis and parallel factor model. UAPs were observed increased with the increase of filter media depth and accumulated after BAF treatment, whereas BAPs were basically constant. 3D-EEM spectroscopy analysis result showed that tryptophan and protein-like compounds were the main components of UAPs and BAPs, and fulvic-acid-like substance was a major component of BAPs, rather than UAPs. In terms of molecular weight (MW) distribution, UAP MW presented a bimodal distribution in the range of 1-5 and >10 kDa, while BAP MW exhibited unimodal distribution with MW >20 kDa fraction accounting for more than 90 %. The macromolecules of UAPs accumulated after BAF treatment. This study provides theoretical support for in-depth study of SMP characteristics. PMID:26801929

  6. Synthesis, Characterization and Biological Evaluation of Transition Metal Complexes Derived from N, S Bidentate Ligands

    Directory of Open Access Journals (Sweden)

    Enis Nadia Md Yusof

    2015-05-01

    Full Text Available Two bidentate NS ligands were synthesized by the condensation reaction of S-2-methylbenzyldithiocarbazate (S2MBDTC with 2-methoxybenzaldehyde (2MB and 3-methoxybenzaldehyde (3MB. The ligands were reacted separately with acetates of Cu(II, Ni(II and Zn(II yielding 1:2 (metal:ligand complexes. The metal complexes formed were expected to have a general formula of [M(NS2] where M = Cu2+, Ni2+, and Zn2+. These compounds were characterized by elemental analysis, molar conductivity, magnetic susceptibility and various spectroscopic techniques. The magnetic susceptibility measurements and spectral results supported the predicted coordination geometry in which the Schiff bases behaved as bidentate NS donor ligands coordinating via the azomethine nitrogen and thiolate sulfur. The molecular structures of the isomeric S2M2MBH (1 and S2M3MBH (2 were established by X-ray crystallography to have very similar l-shaped structures. The Schiff bases and their metal complexes were evaluated for their biological activities against estrogen receptor-positive (MCF-7 and estrogen receptor-negative (MDA-MB-231 breast cancer cell lines. Only the Cu(II complexes showed marked cytotoxicity against the cancer cell lines. Both Schiff bases and other metal complexes were found to be inactive. In concordance with the cytotoxicity studies, the DNA binding studies indicated that Cu(II complexes have a strong DNA binding affinity.

  7. Cell Biological Characterization of Male Meiosis and Pollen Development in Rice

    Institute of Scientific and Technical Information of China (English)

    Chang-Bin CHEN; Yun-Yuan XU; Hong MA; Kang CHONG

    2005-01-01

    Little systematic analysis has been undertaken in rice (Oryza sativa L.) on the stages of male meiosis from leptotene to telophase Ⅱ or of pollen development from microspores to mature pollen grains.The present study describes multiple stages in detail from analysis of rice chromosome spreading with staining of 4',6-diamidino-2-phenylindole. The description of normal wild-type male meiosis provides an important morphological reference for analyses of meiotic mutants. Meiosis in rice is largely similar to those of the well characterizing model plants Arabidopsis thaliana L. and Zea mays L. However, rice meiosis differs from that in Arabidopsis in that rice meiosis I is followed by the formation of a cell plate, instead of an organelle band that forms between the two nuclei and persist through meiosis Ⅱ. This suggests a difference in the control of organelle biogenesis and distribution and cytokinesis. Our results should facilitate studies of rice meiosis and pollen development using molecular genetic and cell biological approaches.

  8. Synthesis, characterization, biological and electrochemical evaluation of novel ether based ON donor bidentate Schiff bases

    Science.gov (United States)

    Shabbir, Muhammad; Akhter, Zareen; Ahmad, Iqbal; Ahmed, Safeer; Ismail, Hammad; Mirza, Bushra; McKee, Vickie; Bolte, Michael

    2016-07-01

    Four novel ON donor Schiff bases (E)-2-((4-phenoxyphenylimino)methyl)phenol (HL1), (E)-2-((4-(4-biphenyloxy)phenylimino)methyl)phenol(HL2), (E)-2-((4-(naphthalen-1-yloxy) phenylimino)methyl)phenol(HL3)and(E)-2-((4-(2-naphthoxy)phenylimino)methyl)phenol (HL4)have been synthesized and characterized by various spectroscopic, analytical and electro-analytical techniques. Single crystal X-ray diffraction analysis of Schiff base (HL3) revealed that phenol and anthracene rings are inclined at 30.25(9)° and 89.64(4)° to the central phenyl ring, respectively. Intra and inter molecular interactions are observed in single crystal analysis of HL3 Intramolecular interactions are hydrogen bonding but most of the intermolecular interactions are of the C-H … π type. There is a bit of π … π stacking between the anthracene groups. Only compounds (HL1) and (HL3) have been investigated for the biological activities due to slight solubility of (HL2) and (HL4) in DMSO. The results of brine shrimp cytotoxicity assay indicated LD50 values order of 104 M-1.

  9. Characterization of the action of epidermal growth factor in three different biological systems

    International Nuclear Information System (INIS)

    In general, these studies characterized in each system one or more of the following aspects of EGF's biological action: EGF binding, EGF-induced phosphorylation, or EGF-stimulated DNA synthesis. In human corneal fibroblasts (HCF), EGF binds to specific, saturable, high affinity receptors and stimulated [3H]-thymidine incorporation, and in vitro measurement of DNA synthesis, approximately 2.5 fold above control cultures, with maximal stimulation occurring at approximately 1 nM EGF. In addition, fibroblasts growth factor (FGF) and insulin stimulated maximal [3H]-thymidine incorporation in HCF at approximately 100 ng ml-1 and 1 nM, respectively. In combination with dexamethasone (5 nM), the stimulation of [3H]-thymidine incorporation by EGF was maintained. However, dexamethasone abolished the stimulatory action of FGF. Highly purified preparations of human placental outer cell membranes and intracellular organelles were assayed for functional EGF binding proteins (EGF-receptors). Functionality of a protein was determined by covalent labeling with [125I]-EGF and EGF-stimulated autophosphorylation

  10. Synthesis, characterization, and in vitro biological evaluation of highly stable diversely functionalized superparamagnetic iron oxide nanoparticles

    Energy Technology Data Exchange (ETDEWEB)

    Bhattacharya, Dipsikha; Sahu, Sumanta K. [Indian Institute of Technology Kharagpur, Department of Chemistry (India); Banerjee, Indranil [Indian Institute of Technology Kharagpur, Department of Biotechnology (India); Das, Manasmita [Indian Institute of Technology Kharagpur, Department of Chemistry (India); Mishra, Debashish; Maiti, Tapas K. [Indian Institute of Technology Kharagpur, Department of Biotechnology (India); Pramanik, Panchanan, E-mail: dipsikha.chem@gmail.com [Indian Institute of Technology Kharagpur, Department of Chemistry (India)

    2011-09-15

    In this article, we report the design and synthesis of a series of well-dispersed superparamagnetic iron oxide nanoparticles (SPIONs) using chitosan as a surface modifying agent to develop a potential T{sub 2} contrast probe for magnetic resonance imaging (MRI). The amine, carboxyl, hydroxyl, and thiol functionalities were introduced on chitosan-coated magnetic probe via simple reactions with small reactive organic molecules to afford a series of biofunctionalized nanoparticles. Physico-chemical characterizations of these functionalized nanoparticles were performed by TEM, XRD, DLS, FTIR, and VSM. The colloidal stability of these functionalized iron oxide nanoparticles was investigated in presence of phosphate buffer saline, high salt concentrations and different cell media for 1 week. MRI analysis of human cervical carcinoma (HeLa) cell lines treated with nanoparticles elucidated that the amine-functionalized nanoparticles exhibited higher amount of signal darkening and lower T{sub 2} relaxation in comparison to the others. The cellular internalization efficacy of these functionalized SPIONs was also investigated with HeLa cancer cell line by magnetically activated cell sorting (MACS) and fluorescence microscopy and results established selectively higher internalization efficacy of amine-functionalized nanoparticles to cancer cells. These positive attributes demonstrated that these nanoconjugates can be used as a promising platform for further in vitro and in vivo biological evaluations.

  11. Synthesis, characterization, and in vitro biological evaluation of highly stable diversely functionalized superparamagnetic iron oxide nanoparticles

    International Nuclear Information System (INIS)

    In this article, we report the design and synthesis of a series of well-dispersed superparamagnetic iron oxide nanoparticles (SPIONs) using chitosan as a surface modifying agent to develop a potential T2 contrast probe for magnetic resonance imaging (MRI). The amine, carboxyl, hydroxyl, and thiol functionalities were introduced on chitosan-coated magnetic probe via simple reactions with small reactive organic molecules to afford a series of biofunctionalized nanoparticles. Physico-chemical characterizations of these functionalized nanoparticles were performed by TEM, XRD, DLS, FTIR, and VSM. The colloidal stability of these functionalized iron oxide nanoparticles was investigated in presence of phosphate buffer saline, high salt concentrations and different cell media for 1 week. MRI analysis of human cervical carcinoma (HeLa) cell lines treated with nanoparticles elucidated that the amine-functionalized nanoparticles exhibited higher amount of signal darkening and lower T2 relaxation in comparison to the others. The cellular internalization efficacy of these functionalized SPIONs was also investigated with HeLa cancer cell line by magnetically activated cell sorting (MACS) and fluorescence microscopy and results established selectively higher internalization efficacy of amine-functionalized nanoparticles to cancer cells. These positive attributes demonstrated that these nanoconjugates can be used as a promising platform for further in vitro and in vivo biological evaluations.

  12. Biological and molecular characterization of a raccoon isolate of Trypanosoma cruzi from South Carolina.

    Science.gov (United States)

    Yabsley, Michael J; Noblet, Gayle Pittman

    2002-12-01

    Biological and molecular characteristics of a raccoon isolate of Trypanosoma cruzi (R36) were compared with those of a known virulent strain (Brazil). Included in the characterization were growth rate in liver infusion tryptose medium, infectivity for murine fibroblasts, intracellular amastigote replication and trypomastigote release rates, polymerase chain reaction (PCR) profiling of the mini-exon gene, isoenzyme and random amplified polymorphic DNA (RAPD) profiles, and in vivo virulence for C3H/HeJ mice. Similar growth curves were noted for both strains; however, infectivity and rates of intracellular amastigote replication and trypomastigote release were significantly lower for the R36 isolate than for the Brazil strain. To determine virulence, C3H/ HeJ mice were exposed intraperitoneally to the R36 isolate. No parasite was observed in blood by direct examination or in tissues by histology; however, T. cruzi was detected by PCR in tissues (quadriceps and spleen) at 21 days postinfection. Analyses of the mini-exon gene, isoenzyme, and RAPD profiles indicate that R36 is in the T. cruzi II group and the Brazil strain is in the T. cruzi I group. Although infectivity and virulence of the raccoon isolate were lower than those for the Brazil strain, autochthonous infections in the United States have been reported, which suggests the need for further study of local T. cruzi isolates. PMID:12537130

  13. Characterization and aerobic biological treatment of msw: a case study of hyderabad city

    International Nuclear Information System (INIS)

    This study was conducted to assess the MSW (Municipal Solid Waste) generated in Hyderabad city for its suitability to make compost product through AB (Aerobic Biological) treatment. Assessment of MSW regarding its generation rate, quantification and characterization decides its suitability for composting process. Three AB treatment reactors R1 (natural air circulation and manually mixed reactor), R2 (compressed air circulation and manually mixed reactor) and R3 (compressed air circulation and mechanically mixed reactor) were designed and fabricated. AB treatment of the segregated food and yard waste reveals that there is no any significant change occurs in the moisture content of the compost product in all the reactors but, significant loss of VS (Volatile Solids) and gain of ash content was observed for reactor R2. Thus, the reactor R2 is the most efficient reactor in comparison to other reactors. Moreover, the mechanical mixing in AB treatment does not significantly increase VS loss. Further the reactor R1 does not consumes electricity and thus can be employed as the solution for converting segregated food and yard waste from MSW into a compost product. (author)

  14. Characterization and Aerobic Biological Treatment of MSW: A Case Study of Hyderabad City

    Directory of Open Access Journals (Sweden)

    Muhammad Safar Korai

    2014-07-01

    Full Text Available This study was conducted to assess the MSW (Municipal Solid Waste generated in Hyderabad city for its suitability to make compost product through AB (Aerobic Biological treatment. Assessment of MSW regarding its generation rate, quantification and characterization decides its suitability for composting process. Three AB treatment reactors R1 (natural air circulation and manually mixed reactor, R2 (compressed air circulation and manually mixed reactor and R3 (compressed air circulation and mechanically mixed reactor were designed and fabricated. AB treatment of the segregated food and yard waste reveals that there is no any significant change occurs in the moisture content of the compost product in all the reactors but, significant loss of VS (Volatile Solids and gain of ash content was observed for reactor R2. Thus, the reactor R2 is the most efficient reactor in comparison to other reactors. Moreover, the mechanical mixing in AB treatment does not significantly increase VS loss. Further the reactor R1 does not consumes electricity and thus can be employed as the solution for converting segregated food and yard waste from MSW into a compost product

  15. Characterization of biological activity of cigarette smoke using in vitro tests

    International Nuclear Information System (INIS)

    Studies were conducted to characterize the influence of exposure mode (whole-body continuous, nose only intermittent, nose-only continuous) on biological activity of cigarette smoke condensates. The mutagenic potency of the extracts was determined using Salmonella typhimurium tester strain TA-98 with and without the addition of S-9. The cytotoxicity of the cigarette smoke with and without the addition of S-9 was also determined using Chinese hamster ovary cells (CHO). Mutagenic activity was observed in the Ames test only after the addition of S-9. The optimum mutagenic activity was observed following addition of between 3 and 6% S-9. The average mutagenic potency, when cells were tested at the optimum level of S-9, was 1.5 revertants/mg extract. Cell killing by cigarette smoke extracts was the same for extracts derived from all three exposure modes. There was about 20% cell killing at concentrations of 300 mg extract/mL culture media. No differences were observed in either mutagenic or cytotoxic potency among the smoke extracts produced under different exposure conditions. (author)

  16. Fundamental Issues Related to the Origin of Melatonin and Melatonin Isomers during Evolution: Relation to Their Biological Functions

    Directory of Open Access Journals (Sweden)

    Dun-Xian Tan

    2014-09-01

    Full Text Available Melatonin and melatonin isomers exist and/or coexist in living organisms including yeasts, bacteria and plants. The levels of melatonin isomers are significantly higher than that of melatonin in some plants and in several fermented products such as in wine and bread. Currently, there are no reports documenting the presence of melatonin isomers in vertebrates. From an evolutionary point of view, it is unlikely that melatonin isomers do not exist in vertebrates. On the other hand, large quantities of the microbial flora exist in the gut of the vertebrates. These microorganisms frequently exchange materials with the host. Melatonin isomers, which are produced by these organisms inevitably enter the host’s system. The origins of melatonin and its isomers can be traced back to photosynthetic bacteria and other primitive unicellular organisms. Since some of these bacteria are believed to be the precursors of mitochondria and chloroplasts these cellular organelles may be the primary sites of melatonin production in animals or in plants, respectively. Phylogenic analysis based on its rate-limiting synthetic enzyme, serotonin N-acetyltransferase (SNAT, indicates its multiple origins during evolution. Therefore, it is likely that melatonin and its isomer are also present in the domain of archaea, which perhaps require these molecules to protect them against hostile environments including extremely high or low temperature. Evidence indicates that the initial and primary function of melatonin and its isomers was to serve as the first-line of defence against oxidative stress and all other functions were acquired during evolution either by the process of adoption or by the extension of its antioxidative capacity.

  17. Structural Characterization, Biological Effects, and Synthetic Studies on Xanthones from Mangosteen (Garcinia mangostana), a Popular Botanical Dietary Supplement

    OpenAIRE

    Chin, Young-Won; Kinghorn, A. Douglas

    2008-01-01

    Mangosteen (Garcinia mangostana L., Clusiaceae) is a popular botanical dietary supplement in the United States, where it is used principally as an antioxidant. It is referred to as the “queen of fruits” in Thailand, a country of origin. The major secondary metabolites of mangosteen, the xanthones, exhibit a variety of biological activities including antibacterial, antifungal, antiinflammatory, antioxidant, antiplasmodial, cytotoxic, and potential cancer chemopreventive activities. Moreover, s...

  18. Characterization, origin and hierarchy of lateral shale-barriers in the Petrocedeno heavy oil field, Orinoco oil belt, Venezuela

    Energy Technology Data Exchange (ETDEWEB)

    Hegner, J. [Petrocedeno, Total E and P (Venezuela); Bejarano, C. [Petrocedeno, PDVSA, CVP (Venezuela)

    2011-07-01

    The Petrocedeno heavy oil field located in the western part of the Orinoco oil belt, Venezuela, is in its last stages of primary recovery with over 10 years of production and enhanced oil recovery (EOR) projects are now being considered. A better reservoir characterization is required to implement those EOR projects and thus the aim of the study is to improve understanding of the reservoir barriers and baffles. Based on available data, core description and wire-line pressure depletion data from the Petrocedeno field, a shale barrier model was developed. It was found that thick mudstone may provide shale barriers and interact with production. In addition a hierarchy for the Petrocedeno area was proposed. This study provided a better understanding of shale barriers in the Petrocedeno heavy oil field but further research should be undertaken to refine the recognition of shale origin.

  19. A los 150 años desde "El origen de las especies": ¿es darwinista la biología contemporánea? At 150 years since "The origin of species": Is contemporary biology Darwinian?

    Directory of Open Access Journals (Sweden)

    GUILLERMO FOLGUERA

    2009-12-01

    Full Text Available A los 150 años de la publicación de "El origen de las especies" de Charles Darwin, numerosos homenajes se han realizado en diferentes ciudades del mundo. Sin embargo, es importante preguntarse hacia el seno de la comunidad científica acerca del alcance efectivo del darwinisimo dentro de la biología. En este trabajo analizamos este supuesto intentando responder, al menos de una manera aproximativa, la pregunta: ¿es darwinista la biología en la actualidad? A estos fines, consideramos algunos de los principales aportes que suelen asignarse al darwinismo en las ciencias de los sistemas vivos: el análisis y centro en la diversidad, un origen único de los sistemas vivos, la incorporación del azar y el reconocimiento de las causas proximales. En términos generales detectamos importantes líneas de continuidad entre el darwinismo y las diferentes disciplinas que componen a la biología contemporánea. Sin embargo, esta situación dista de ser general y no ocurre para todas las ideas analizadas. En este sentido, en algunas áreas del conocimiento el darwinismo solo se ha filtrado mediante la implementación de recortes significativos (tal como el caso de la reducción de los procesos evolutivos a la selección natural, o bien a través de aspectos que aún no son debidamente incorporados en la investigación científica (tal como en el caso del estudio de la variabilidad. Por lo tanto, la futura incorporación de estos elementos se presenta como un desafío importante para lograr una biología integradora.After 150 years of the publication of the Origin of Species by Charles Darwin, a number of tributes had honored him worldwide. However, it seems important to ask about the effective application of Darwin's ideas within the biological disciplines. Herein we analyze this problem trying to answer the question: is contemporary biology Darwinian? To this end, we consider some of the main assumed contributions of Darwinism to the sciences of living

  20. Molecular cloning and characterization of a novel pyrethroid-hydrolyzing esterase originating from the Metagenome

    Directory of Open Access Journals (Sweden)

    Liu Yu

    2008-12-01

    , purified and characterized. The molecular mass of the native enzyme was approximately 31 kDa as determined by gel filtration. The results of sodium dodecyl sulfate-polyacrylamide gel electrophoresis and the deduced amino acid sequence of the Pye3 indicated molecular mass of 31 kDa and 31.5 kDa, respectively, suggesting that the Pye3 is a monomer. The purified Pye3 not only degraded all pyrethroid pesticides tested, but also hydrolyzed ρ-nitrophenyl esters of medium-short chain fatty acids, indicating that the Pye3 is an esterase with broader specificity. The Km values for trans-Permethrin and cis-permethrin are 0.10 μM and 0.18 μM, respectively, and these catalytic properties were superior to carboxylesterases from resistant insects and mammals. The catalytic activity of the Pye3 was strongly inhibited by Hg2+, Ag+, ρ-chloromercuribenzoate, whereas less pronounced effect was observed in the presence of divalent cations, the chelating agent EDTA and phenanthroline. Conclusion A novel pyrethroid-hydrolyzing esterase gene was successfully cloned using metagenomic DNA combined with activity-based functional screening from soil, the broader substrate specificities and higher activity of the pyrethroid-hydrolyzing esterase (Pye3 make it an ideal candidate for in situ for detoxification of pyrethroids where they cause environmental contamination problems. Consequently, metagenomic DNA clone library offers possibilities to discover novel bio-molecules through the expression of genes from uncultivated bacteria.

  1. Characterization of Staphylococcus aureus from Humans and a Comparison with Isolates of Animal Origin, in North Dakota, United States.

    Directory of Open Access Journals (Sweden)

    Valeria Velasco

    Full Text Available Different clones of methicillin-susceptible (MSSA and methicillin-resistant (MRSA Staphylococcus aureus have been found in humans as well as in animals and retail meat. However, more information about the genetic characteristics and similarities between strains is needed. The aim of this study was to identify and characterize Staphylococcus aureus from humans, and to compare their characteristics with isolates of animal origin. A total of 550 nasal swabs were taken from healthy humans, and S. aureus was isolated and identified. Positive S. aureus isolates were subjected to molecular typing and susceptibility testing. In addition, 108 MRSA isolates recovered from clinical patients in the state of North Dakota and 133 S. aureus isolates from animals and meat previously analyzed were included. The nasal carriage of S. aureus in healthy people was 7.6% and, in general, clones were genetically diverse. None of the S. aureus strains obtained from healthy people were mecA- or PVL-positive. A total of 105 (97.2% MRSA isolates from clinical cases harbored the mecA gene and 11 (10.2% isolated from blood stream infections harbored the PVL gene. The most common resistance profile among S. aureus from healthy people was penicillin, and from clinical cases were erythromycin-penicillin-ciprofloxacin. The rate of multidrug resistance (MDR was 70% in humans. Most of the S. aureus harboring mecA and PVL genes were identified as ST5 and ST8, and exhibited MDR. However, S. aureus isolates of animal origin used for comparison exhibited a lower rate of MDR. The most common resistance profiles in isolates of animal origin were penicillin-tetracycline and penicillin-tetracycline-erythromycin, in animals and raw meat, respectively. The ST5 was also found in animals and meat, with ST9 and ST398 being the major clones. The genetic similarity between clones from humans and meat suggests the risk of spread of S. aureus in the food chain.

  2. Characterization of volatiles in Beaten cheeses (bieno sirenje by SPME/GC-MC: Influence of geographical origin

    Directory of Open Access Journals (Sweden)

    Sulejmani Erhan

    2014-01-01

    Full Text Available In this study, the volatile profiles of a type of economically important cheeses for the FYR Macedonian dairy sector were characterized. A total of eighteen samples belonged to 6 different geographical regions of Beaten cheese, including cheeses from Kumanovo, Tetovo, Struga, Resen, Veles and Radovish were comparatively studied for their volatile profiles. Sixty two volatile compounds were identified in the cheeses by solid-phase microextraction combined with gas chromatography-mass spectrometry and the results are discussed based on their chemical classes (18 esters, 13 ketones, 10 acids, 8 alcohols, 5 terpenes, and 8 miscellaneous compounds. Acids, esters and alcohols were the most abundant classes identified and were highly dependent on the geographical origin of cheeses. Beaten cheese from Struga had the highest levels of carboxylic acids, ketones, alcohols, esters and terpenes. The Beaten cheese from other geographical origin had low levels of volatiles probably from the effect of variable characteristics of used milk and different cheese making process which affects the biochemical processes. The results suggest that each cheese from different geographical regions had different volatiles profile and the manufacturing technique as well as the ripening stage of the cheeses played a major role on the volatile compounds’ distribution.

  3. Characterization of apple seed oil with Denomination of Origin from Asturias, Spain

    Directory of Open Access Journals (Sweden)

    Bada, J. C.

    2014-06-01

    Full Text Available The content and composition of lipids isolated from the seeds of seven apple species from Asturias (Spain were characterized. The highest content in oil corresponded to Collao (22.73±0.81 g·100 g-1 of seed, followed by Raxao and Riega (20.19±0.74 g·100 g-1 of seed; 19.67±0.85 g·100 g-1 of seed, respectively. The linoleic acid was found to be the main component in Limón Montés (60.78±3.07% followed by Riega (60.01±3.41%. Solarina seed oil was the one with the highest content in total sterols (558.52±9.42 mg·100 g-1 of oil while Blanquina was the one that presents the lowest amount (166.55±1.89 mg·100 g-1 of oil. Phosphatidylcholine (70.58±3.85% was found to be the main constituent in Blanquina followed by Collaos (55.55±2.96%. Raxao presented the highest content in β-tocopherol (125.29±12.62 and α-tocopherol was the most important tocopherol in Limón Montés (84.68±5.61 mg·kg-1 of oil. The main triglycerides were LLP (41.17±1.98-39.32±1.66% followed by LLL (27.12±1.32−17.80±1.96%. Good separation among specie samples according to the statistical analysis of the principal component (PCs and linear discriminant analysis (LDA was obtained.Se ha caracterizado el contenido y composición de los lípidos aislados de semillas de siete especies de manzanas de Asturias (España. El contenido más alto en aceite correspondió a Collao (22.73±0.81 g·100 g-1 de semilla, seguida de Raxao y Riega (20.19±0.74 g·100 g-1 de semilla y 19.67±0.85 g·100 g-1 de semilla respectivamente. El ácido linoleico fué el de mayor contenido en Limón Montés (60.78±3.07% seguido por la Riega (60.01±3.41%. El contenido más alto en esteroles correspondió a Solarina (558.52±9.42 mg·100 g-1 de aceite mientras que Blanquina fué el que presentó los valores más bajo (166.55±1.89 mg·100 g-1 de aceite. Fosfatidilcolina (70.58±3.85% del total FL fué el principal constituyente en Blanquina seguida por Collao (55.55±2.96% del total FL

  4. Micro-PIXE characterization of interactions between a sol-gel derived bioactive glass and biological fluids

    OpenAIRE

    Lao, Jonathan; Nedelec, Jean-Marie; Moretto,Philippe; Jallot, Edouard

    2006-01-01

    Bioactive glasses possess the ability to bond to living tissues through the formation of a calcium phosphate-rich layer at their interface with living tissues. This paper reports the different steps of this bioactivity process via a complete micro-PIXE characterization of a sol-gel derived SiO2-CaO bioactive glass in contact with biological fluids for different delays. Multi-elemental cartography at the glass/biological fluids interface together with major and trace elements quantification pe...

  5. Interactive Software for the study of membrane biology: lipid composition, solubilization and liposome reconstitution and characterization

    Directory of Open Access Journals (Sweden)

    I.A. Borin

    2006-07-01

    Full Text Available Biological  membranes define cellular boundaries, divide cells into discrete  compartments, organize complex reaction sequences, and act in signal reception and energy transformations. This topic is studied in all undergraduate biochemistry  courses.  Visualization  of  structures  generally  facilitates  the  understanding  of  many  related  topics  of membrane composition, structures, and protein interactions but they lack in many events that occurs in membranes. Also,  at  the  present  time,  animations  exploring  solubilization  and  reconstitution  of  membrane  proteins  in  vesicular systems are not available. Thus, we have developed a software  named  AnimaBio, in Macromedia  Flash 7.0, whose principal objective was the animation of some  processes  used  in the study  of membrane  biology and it was  didactically  divided  in:  (1 composition  and  physics  properties;  (2  construction  of  systems  mimetically  to  natural  membranes  and  (3 characterization of these biomimetic systems using experimental examples.The topics explained in each section were: (1 Membranes composition; lipids and proteins distribution; fluid mosaic  model;  the  basic  structural  unit  of  lipid  bilayer;  peripheral  proteins;  anchored  proteins;  integral  proteins; covalently attached oligosaccharides; solubilization of proteins and hemolytic effects; (2 construction of biomimetical systems using different techniques; sonication followed by direct insertion of proteins and co-solubilization methods; (3  Kinetic  properties  of  the  enzyme,  reconstituted  in  the  vesicular  system,  using  examples  of  actions  of  different agents such as: inhibitors, detergents, ionophores and photosensitive dyes. All topics were illustrated in the animation using  some  examples  such  as:  erythrocytes  membranes;  alkaline  phosphatase  (which

  6. Mammographic quantitative image analysis and biologic image composition for breast lesion characterization and classification

    International Nuclear Information System (INIS)

    Purpose: To investigate whether biologic image composition of mammographic lesions can improve upon existing mammographic quantitative image analysis (QIA) in estimating the probability of malignancy. Methods: The study population consisted of 45 breast lesions imaged with dual-energy mammography prior to breast biopsy with final diagnosis resulting in 10 invasive ductal carcinomas, 5 ductal carcinomain situ, 11 fibroadenomas, and 19 other benign diagnoses. Analysis was threefold: (1) The raw low-energy mammographic images were analyzed with an established in-house QIA method, “QIA alone,” (2) the three-compartment breast (3CB) composition measure—derived from the dual-energy mammography—of water, lipid, and protein thickness were assessed, “3CB alone”, and (3) information from QIA and 3CB was combined, “QIA + 3CB.” Analysis was initiated from radiologist-indicated lesion centers and was otherwise fully automated. Steps of the QIA and 3CB methods were lesion segmentation, characterization, and subsequent classification for malignancy in leave-one-case-out cross-validation. Performance assessment included box plots, Bland–Altman plots, and Receiver Operating Characteristic (ROC) analysis. Results: The area under the ROC curve (AUC) for distinguishing between benign and malignant lesions (invasive and DCIS) was 0.81 (standard error 0.07) for the “QIA alone” method, 0.72 (0.07) for “3CB alone” method, and 0.86 (0.04) for “QIA+3CB” combined. The difference in AUC was 0.043 between “QIA + 3CB” and “QIA alone” but failed to reach statistical significance (95% confidence interval [–0.17 to + 0.26]). Conclusions: In this pilot study analyzing the new 3CB imaging modality, knowledge of the composition of breast lesions and their periphery appeared additive in combination with existing mammographic QIA methods for the distinction between different benign and malignant lesion types

  7. Physicochemical and biological characterizations of Pxt peptides from amphibian (Xenopus tropicalis) skin.

    Science.gov (United States)

    Shigeri, Yasushi; Horie, Masanori; Yoshida, Tsuyoshi; Hagihara, Yoshihisa; Imura, Tomohiro; Inagaki, Hidetoshi; Haramoto, Yoshikazu; Ito, Yuzuru; Asashima, Makoto

    2016-06-01

    Pxt peptides (Pxt-1 through Pxt-12) have been isolated from amphibian, Xenopus tropicalis Pxt-related peptides (Pxt-2, Pxt-5, Pxt-12, reverse Pxt-2, reverse Pxt-5 and reverse Pxt-12) with significant foaming properties were further characterized. In the physicochemical experiments, all Pxt-related peptides formed significant amphiphilic α-helices in 50% 2,2,2-trifluoroethanol by circular dichroism measurements. Among Pxt-related peptides, both Pxt-5 and reverse Pxt-5 were the most effective in reducing their surface tensions. Moreover, Pxt-2, Pxt-5 and reverse Pxt-5 produced constant surface tensions above their critical association concentrations, suggesting the micelle-like assemblies. In the biological experiments, Pxt-5 possessed the most potent hemolytic activity, while reverse Pxt-5 exhibited the most remarkable gene expression of interleukin 8 and heme oxygenase 1 and the most potent cytotoxicity in HaCaT cells. In contrast, Pxt-12 and reverse Pxt-12 were much weaker in antimicrobial assays for Gram-negative bacteria, Gram-positive bacteria and yeasts, as well as in hemolytic, cell viability and cytotoxicity assays in HaCaT cells. All Pxt-related peptides exhibited about 20-50% of the total cellular histamine release at 10(-5) M, as well as mastoparan and melittin in mast cells. Real-time polymerase chain reaction analysis confirmed the gene expressions of Pxt-5 in testis and Pxt-12 in muscle, in addition to skin, while Pxt-2 was only in skin. PMID:26802742

  8. Chemical and biological characterization of wastewater generated from hydrothermal liquefaction of Spirulina.

    Science.gov (United States)

    Pham, Mai; Schideman, Lance; Scott, John; Rajagopalan, Nandakishore; Plewa, Michael J

    2013-02-19

    Hydrothermal liquefaction (HTL) is an attractive method for converting wet biomass into petroleum-like biocrude oil that can be refined to make petroleum products. This approach is advantageous for conversion of low-lipid algae, which are promising feedstocks for sustainable large-scale biofuel production. As with natural petroleum formation, the water in contact with the produced oil contains toxic compounds. The objectives of this research were to: (1) identify nitrogenous organic compounds (NOCs) in wastewater from HTL conversion of Spirulina; (2) characterize mammalian cell cytotoxicity of specific NOCs, NOC mixture, and the complete HTL wastewater (HTL-WW) matrix; and (3) investigate mitigation measures to reduce toxicity in HTL-WW. Liquid-liquid extraction and nitrogen-phosphorus detection was used in conjunction with gas chromatography-mass spectrometry (GC-MS), which detected hundreds of NOCs in HTL-WW. Reference materials for nine of the most prevalent NOCs were used to identify and quantify their concentrations in HTL-WW. Mammalian cell cytotoxicity of the nine NOCs was quantified using a Chinese hamster ovary (CHO) cell assay, and the descending rank order for cytotoxicity was 3-dimethylamino-phenol > 2,2,6,6-tetramethyl-4-piperidone > 2,6-dimethyl-3-pyridinol > 2-picoline > pyridine > 1-methyl-2-pyrrolidinone > σ-valerolactam > 2-pyrrolidinone > ε-caprolactam. The organic mixture extracted from HTL-WW expressed potent CHO cell cytotoxic activity, with a LC(50) at 7.5% of HTL-WW. Although the toxicity of HTL-WW was substantial, 30% of the toxicity was removed biologically by recycling HTL-WW back into algal cultivation. The remaining toxicity of HTL-WW was mostly eliminated by subsequent treatment with granular activated carbon. PMID:23305492

  9. Mammographic quantitative image analysis and biologic image composition for breast lesion characterization and classification

    Energy Technology Data Exchange (ETDEWEB)

    Drukker, Karen, E-mail: kdrukker@uchicago.edu; Giger, Maryellen L.; Li, Hui [Department of Radiology, University of Chicago, Chicago, Illinois 60637 (United States); Duewer, Fred; Malkov, Serghei; Joe, Bonnie; Kerlikowske, Karla; Shepherd, John A. [Radiology Department, University of California, San Francisco, California 94143 (United States); Flowers, Chris I. [Department of Radiology, University of South Florida, Tampa, Florida 33612 (United States); Drukteinis, Jennifer S. [Department of Radiology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, Florida 33612 (United States)

    2014-03-15

    Purpose: To investigate whether biologic image composition of mammographic lesions can improve upon existing mammographic quantitative image analysis (QIA) in estimating the probability of malignancy. Methods: The study population consisted of 45 breast lesions imaged with dual-energy mammography prior to breast biopsy with final diagnosis resulting in 10 invasive ductal carcinomas, 5 ductal carcinomain situ, 11 fibroadenomas, and 19 other benign diagnoses. Analysis was threefold: (1) The raw low-energy mammographic images were analyzed with an established in-house QIA method, “QIA alone,” (2) the three-compartment breast (3CB) composition measure—derived from the dual-energy mammography—of water, lipid, and protein thickness were assessed, “3CB alone”, and (3) information from QIA and 3CB was combined, “QIA + 3CB.” Analysis was initiated from radiologist-indicated lesion centers and was otherwise fully automated. Steps of the QIA and 3CB methods were lesion segmentation, characterization, and subsequent classification for malignancy in leave-one-case-out cross-validation. Performance assessment included box plots, Bland–Altman plots, and Receiver Operating Characteristic (ROC) analysis. Results: The area under the ROC curve (AUC) for distinguishing between benign and malignant lesions (invasive and DCIS) was 0.81 (standard error 0.07) for the “QIA alone” method, 0.72 (0.07) for “3CB alone” method, and 0.86 (0.04) for “QIA+3CB” combined. The difference in AUC was 0.043 between “QIA + 3CB” and “QIA alone” but failed to reach statistical significance (95% confidence interval [–0.17 to + 0.26]). Conclusions: In this pilot study analyzing the new 3CB imaging modality, knowledge of the composition of breast lesions and their periphery appeared additive in combination with existing mammographic QIA methods for the distinction between different benign and malignant lesion types.

  10. Spectroscopic characterization of biological agents using FTIR, normal Raman and surface-enhanced Raman spectroscopies

    Science.gov (United States)

    Luna-Pineda, Tatiana; Soto-Feliciano, Kristina; De La Cruz-Montoya, Edwin; Pacheco Londoño, Leonardo C.; Ríos-Velázquez, Carlos; Hernández-Rivera, Samuel P.

    2007-04-01

    FTIR, Raman spectroscopy and Surface Enhanced Raman Scattering (SERS) requires a minimum of sample allows fast identification of microorganisms. The use of this technique for characterizing the spectroscopic signatures of these agents and their stimulants has recently gained considerable attention due to the fact that these techniques can be easily adapted for standoff detection from considerable distances. The techniques also show high sensitivity and selectivity and offer near real time detection duty cycles. This research focuses in laying the grounds for the spectroscopic differentiation of Staphylococcus spp., Pseudomonas spp., Bacillus spp., Salmonella spp., Enterobacter aerogenes, Proteus mirabilis, Klebsiella pneumoniae, and E. coli, together with identification of their subspecies. In order to achieve the proponed objective, protocols to handle, cultivate and analyze the strains have been developed. Spectroscopic similarities and marked differences have been found for Spontaneous or Normal Raman spectra and for SERS using silver nanoparticles have been found. The use of principal component analysis (PCA), discriminate factor analysis (DFA) and a cluster analysis were used to evaluate the efficacy of identifying potential threat bacterial from their spectra collected on single bacteria. The DFA from the bacteria Raman spectra show a little discrimination between the diverse bacterial species however the results obtained from the SERS demonstrate to be high discrimination technique. The spectroscopic study will be extended to examine the spores produced by selected strains since these are more prone to be used as Biological Warfare Agents due to their increased mobility and possibility of airborne transport. Micro infrared spectroscopy as well as fiber coupled FTIR will also be used as possible sensors of target compounds.

  11. The first characterization of gene structure and biological function for echinoderm translationally controlled tumor protein (TCTP).

    Science.gov (United States)

    Ren, Chunhua; Chen, Ting; Jiang, Xiao; Wang, Yanhong; Hu, Chaoqun

    2014-12-01

    Translationally controlled tumor protein (TCTP) is a multifunctional protein that existed ubiquitously in different eukaryote species and distributed widely in various tissues and cell types. In this study, the gene structure and biological function of TCTP were first characterized in echinoderm. An echinoderm TCTP named StmTCTP was identified from sea cucumber (Stichopus monotuberculatus) by expression sequence tag (EST) analysis and rapid amplification of cDNA ends (RACE) approach. The StmTCTP cDNA is 1219 bp in length, containing a 5'-untranslated region (UTR) of 77 bp, a 3'-UTR of 623 bp and an open reading frame (ORF) of 519 bp that encoding a protein of 172 amino acids with a deduced molecular weight of 19.80 kDa and a predicted isolectric point of 4.66. Two deduced signal signatures termed TCTP1 and TCTP2, a microtubule binding domain, a Ca(2+) binding domain and the conserved residues forming Rab GTPase binding surface were found in the StmTCTP amino acid sequence. For the gene structure, StmTCTP contains four exons separated by three introns. The anti-oxidation and heat shock protein activities of recombinant TCTP protein were also demonstrated in this study. In addition, the expression of StmTCTP was found to be significantly upregulated by polyriboinosinic polyribocytidylic acid [poly (I:C)], lipopolysaccharides (LPS) or inactivated bacteria challenge in in vitro primary culture experiments of coelomocytes, suggested that the sea cucumber TCTP might play critical roles not only in the defense against oxidative and thermal stresses, but also in the innate immune defense against bacterial and viral infections. PMID:25193395

  12. Molecular cloning and biological characterization of the human excision repair gene ERCC-3

    International Nuclear Information System (INIS)

    In this report we present the cloning, partial characterization, and preliminary studies of the biological activity of a human gene, designated ERCC-3, involved in early steps of the nucleotide excision repair pathway. The gene was cloned after genomic DNA transfection of human (HeLa) chromosomal DNA together with dominant marker pSV3gptH to the UV-sensitive, incision-defective Chinese hamster ovary (CHO) mutant 27-1. This mutant belongs to complementation group 3 of repair-deficient rodent mutants. After selection of UV-resistant primary and secondary 27-1 transformants, human sequences associated with the induced UV resistance were rescued in cosmids from the DNA of a secondary transformant by using a linked dominant marker copy and human repetitive DNA as probes. From coinheritance analysis of the ERCC-3 region in independent transformants, we deduce that the gene has a size of 35 to 45 kilobases, of which one essential segment has so far been refractory to cloning. Conserved unique human sequences hybridizing to a 3.0-kilobase mRNA were used to isolate apparently full-length cDNA clones. Upon transfection to 27-1 cells, the ERCC-3 cDNA, inserted in a mammalian expression vector, induced specific and (virtually) complete correction of the UV sensitivity and unscheduled DNA synthesis of mutants of complementation group 3 with very high efficiency. Mutant 27-1 is, unlike other mutants of complementation group 3, also very sensitive toward small alkylating agents. This unique property of the mutant is not corrected by introduction of the ERCC-3 cDNA, indicating that it may be caused by an independent second mutation in another repair function. By hybridization to DNA of a human x rodent hybrid cell panel, the ERCC-3 gene was assigned to chromosome 2, in agreement with data based on cell fusion

  13. Synthesis, characterization, biological and electrochemical evaluation of novel ether based ON donor bidentate Schiff bases

    Science.gov (United States)

    Shabbir, Muhammad; Akhter, Zareen; Ahmad, Iqbal; Ahmed, Safeer; Ismail, Hammad; Mirza, Bushra; McKee, Vickie; Bolte, Michael

    2016-07-01

    Four novel ON donor Schiff bases (E)-2-((4-phenoxyphenylimino)methyl)phenol (HL1), (E)-2-((4-(4-biphenyloxy)phenylimino)methyl)phenol(HL2), (E)-2-((4-(naphthalen-1-yloxy) phenylimino)methyl)phenol(HL3)and(E)-2-((4-(2-naphthoxy)phenylimino)methyl)phenol (HL4)have been synthesized and characterized by various spectroscopic, analytical and electro-analytical techniques. Single crystal X-ray diffraction analysis of Schiff base (HL3) revealed that phenol and anthracene rings are inclined at 30.25(9)° and 89.64(4)° to the central phenyl ring, respectively. Intra and inter molecular interactions are observed in single crystal analysis of HL3 Intramolecular interactions are hydrogen bonding but most of the intermolecular interactions are of the C-H … π type. There is a bit of π … π stacking between the anthracene groups. Only compounds (HL1) and (HL3) have been investigated for the biological activities due to slight solubility of (HL2) and (HL4) in DMSO. The results of brine shrimp cytotoxicity assay indicated LD50 values <1 μg/ml showing significant antitumor activity with IC50 values 14.20 and 4.54 μg/ml respectively. The compounds were highly active in protecting DNA against hydroxyl free radicals in concentration dependent manner. Voltammetric results indicated that one electron irreversible oxidation product is formed due to hydroxyl moiety and the process is diffusion controlled. On exposing to DNA environment the electrooxidised product developed electrostatic linkage and groove binding intercalation while consuming the DNA concentration substantially. The binding strength was quantitative in terms of drug-DNA binding of the order of 104 M-1.

  14. A new experiment to investigate the origin of optical activity using a low energy positron beam of controlled helicity. [molecular biology

    Science.gov (United States)

    Gidley, D. W.; Rich, A.; Van House, J. C.; Zitzewitz, P. W.

    1981-01-01

    Previous experiments undertaken in search of a correlation between the origin of optical activity in biological molecules and the helicity of beta particles emitted in nuclear beta decay have not provided any useful results. A description is presented of an experiment in which a low energy polarized positron beam of controlled helicity interacts with an optically active material to form positronium in vacuum. Advantages of the current study compared to the previous experiments are mainly related to a much greater sensitivity. Initially, it will be possible to detect a helicity-dependent asymmetry in triplet positronium formation of 1 part in 10,000. Improvements to better than 1 part in 100,000 should be attainable.

  15. Evidence from carbon isotope measurements for biological origins of individual longchain n-alkanes in sediments from the Nansha Sea, China

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Carbon isotopes are measured for individual long-chain n-alkanes in sediments from the Nansha Sea. The features of carbon isotopic compositions of individual n-alkanes and their origins are studied. The results show that the long-chain n-aikanes have a light carbon isotopic composition and a genetic feature of mixing sources, and low-latitude higher plants and microbes are considered to be their main end member sources. Based on the abundances and carbon isotopic compositions of individual n-alkanes, the fractional contributions of the two end member sources to individual n-aikanes are quantitatively calculated by using a mixing model. The obtained data indicate that the fractional contributions of the two biological sources are different in the three samples. A trend is that the contribution of microbes increases with the depth. These results provide the theory basis and quantitatively studied method for carbon isotopic applied research of individual n-alkanes.

  16. Biological activity is the likely origin of the intersection between the photoreceptor inner and outer segments of the rat retina as determined by optical coherence tomography

    Directory of Open Access Journals (Sweden)

    Yamauchi Y

    2011-11-01

    Full Text Available Yasuyuki Yamauchi, Hiromichi Yagi, Yoshihiko Usui, Keisuke Kimura, Tsuyoshi Agawa, Rintaro Tsukahara, Naoyuki Yamakawa, Hiroshi GotoDepartment of Ophthalmology, Tokyo Medical University Hospital, Tokyo, JapanBackground: Recent research on macular diseases has prompted investigations into the condition of the intersection between the photoreceptor inner and outer segments (IS/OS and the relationship with retinal photoreceptor abnormalities. Although the origin of the IS/OS in optical coherence tomography (OCT images is unclear, it may be related to either the cellular activity of the photoreceptors or the structure of the OS disks. To address this question, we compared the IS/OS status in OCT images of rat retinas before and after euthanasia.Methods: OCT images were taken before and after euthanasia in four eyes of two Brown Norway rats. After the OCT images were taken, the rats were used for histopathological studies to confirm that retinal structures were intact.Results: Before euthanasia, the IS/OS and external limiting membrane (ELM line were clearly identifiable on the OCT images. However, after euthanasia, neither the IS/OS nor the ELM line was evident in three out of four eyes, and a faint IS/OS and an ELM line were identified in one eye. Histopathological analysis did not show any abnormalities in the retina in any of the four eyes.Conclusion: The origin of the IS/OS identified in OCT images is likely related to the biological activities of the photoreceptor cells.Keywords: IS/OS, OCT, histopathology, biological activity

  17. SYNTHESIS, CHARACTERIZATION AND BIOLOGICAL ACTIVITY OF SOME NOVEL ARYL AND HETROARYL CHALCONE ANALOGUES

    Directory of Open Access Journals (Sweden)

    Tribhuvan Singh

    2012-07-01

    Full Text Available A new series of Heterocyclic chalcones showed diversified biological activities. In view of potential biological activities of Heterocyclic chalcones derivative were prepared by claisen-Schmidt condensation technique. The compound were screened for anti-inflammatory and antibacterial activity.

  18. Chemical and botanical characterization of Chilean propolis and biological activity on cariogenic bacteria Streptococcus mutans and Streptococcus sobrinus

    OpenAIRE

    Leticia Barrientos; Herrera, Christian L.; Gloria Montenegro; Ximena Ortega; Jorge Veloz; Marysol Alvear; Alejandro Cuevas; Nicolás Saavedra; Salazar, Luis A.

    2013-01-01

    Propolis is a non-toxic natural substance with multiple pharmacological properties including anti-cancer, antioxidant, fungicidal, antibacterial, antiviral, and anti-inflammatory among others. The aim of this study was to determine the chemical and botanical characterization of Chilean propolis samples and to evaluate their biological activity against the cariogenic bacteria Streptococcus mutans and Streptococcus sobrinus. Twenty propolis samples were obtained from beekeeping producers from t...

  19. Characterization of marine intrusion and origin of the mineralization in the oriental coastal aquifer of Cap Bon (Tunisia)

    International Nuclear Information System (INIS)

    The characterization of marine intrusion and the determination of the origin of the salinisation in the plio-quaternary oriental coastal aquifer of Cap Bon (North-East of Tunisia), and the understanding of its hydrogeological and geochemical behaviours related to overexploitation of water resources, were studied by the geochemical tools, and by the stable isotopes (180, 2H) of water molecules. The study area is bounded by the Gulf of Hammamet in the East, Djebel Sidi Aberahmane in the West, the city of Nabeul in the south and the city Kelibia in the north. The landscape is a coastal plain slightly sloping (3%) towards the sea. The groundwater of the oriental coastal aquifer system occurs mainly at two levels, a shallow aquifer up to depths of about 150 m whose reservoir is consisted by sediments of the plio-quaternary and a deep aquifer between about 150 and 400 in located in the sandstone formations of Miocene and Oligocene of the anticline of Djebel Sidi Abderrahmene. The climate of the region is semi-arid to sub-humid and of Mediterranean type. The long-term mean annual rainfall varies between 400 and 500mm, and the mean annual potential evaporation is about 1100 mm. The determination of the origin of the mineralization, the piezometric and salinity map were established. The overexploitation of the aquifer is characterized by the decrease of piezometiy in the study area, reducing the outflow rate to the sea, and a continuous degradation of the chemical quality of water. Depression cones in various places have dropped to 5 to 10 m below sea level, which demonstrates the inversion of the hydraulic gradient and promotes the invasion of seawater. The increase of the salinity seems mainly linked to the deterioration of the hydrodynamic gradient as suggests the similarity between salinity and piezometric maps. The chloride is strongly correlated to the sodium for the majority of the samples. The predominance of sodium and chloride is explained by the proximity of the

  20. Black crusts and patinas on Pentelic marble from the Parthenon and Erechtheum (Acropolis, Athens): characterization and origin

    International Nuclear Information System (INIS)

    This study describes an analytical approach for the characterization and origin of the encrustation formed on the surface of monuments from the Acropolis in Athens. The morphology of encrustation was investigated by optical and scanning electronic microscopy. X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FTIR), energy-dispersive X-ray fluorescence (EDXRF) and scanning electron microscopy coupled with energy-dispersive X-ray analysis (SEM-EDS) identify and quantify the key elements and compounds associated with the genesis of encrustation. Black crusts (>200 μm thick), consisting of gypsum, calcite and elements such as Si, Al, Fe, Pb, Ti, Zn and Mn, were being formed from interaction between the marble surface and atmospheric pollutants. Orange-brown accretions on the Parthenon, called patinas (∼150 μm thick), comprise calcite, calcium oxalates, low amount of S, and both in the inner and outer parts significant and almost constant amounts of Si, P and Fe; P and Fe identified as hydroxyapatite and hematite, respectively. In the Parthenon patinas, the EDS distribution maps of Si, Fe and P indicate an origin that may be attributed to the residue and transformation of ancient treatments rich in these elements. Patinas from the Erechtheum (∼100 μm thick) resemble plasters consisting of calcite, siliceous sand, hydroxyapatite, calcium oxalates and hematite. EDXRF highlighted the presence of Pb in the patinas from the Erechtheum; FTIR revealed that Pb is in the form of cerussite most probably from the use of attic ochre. The patinas from the Parthenon and Erechtheum, as opposed to black crusts, are associated with the best-preserved surfaces and should remain intact during conservation interventions

  1. Characterization of U/Pu particles originating from the nuclear weapon accidents at Palomares, Spain, 1966 and Thule, Greenland, 1968.

    Science.gov (United States)

    Lind, O C; Salbu, B; Janssens, K; Proost, K; García-León, M; García-Tenorio, R

    2007-04-15

    Following the USAF B-52 bomber accidents at Palomares, Spain in 1966 and at Thule, Greenland in 1968, radioactive particles containing uranium (U) and plutonium (Pu) were dispersed into the environment. To improve long-term environmental impact assessments for the contaminated ecosystems, particles from the two sites have been isolated and characterized with respect to properties influencing particle weathering rates. Low (239)Pu/(235)U (0.62-0.78) and (240)Pu/(239)Pu (0.055-0.061) atom ratios in individual particles from both sites obtained by Inductively Coupled Plasma Mass Spectrometry (ICP-MS) show that the particles contain highly enriched U and weapon-grade Pu. Furthermore, results from electron microscopy with Energy Dispersive X-ray analysis (EDX) and synchrotron radiation (SR) based micrometer-scale X-ray fluorescence (micro-XRF) 2D mapping demonstrated that U and Pu coexist throughout the 1-50 microm sized particles, while surface heterogeneities were observed in EDX line scans. SR-based micrometer-scale X-ray Absorption Near Edge Structure Spectroscopy (micro-XANES) showed that the particles consisted of an oxide mixture of U (predominately UO(2) with the presence of U(3)O(8)) and Pu ((III)/(IV), (IV)/(V) or (III), (IV) and (V)). Neither metallic U or Pu nor uranyl or Pu(VI) could be observed. Characteristics such as elemental distributions, morphology and oxidation states are remarkably similar for the Palomares and Thule particles, reflecting that they originate from similar source and release scenarios. Thus, these particle characteristics are more dependent on the original material from which the particles are derived (source) and the formation of particles (release scenario) than the environmental conditions to which the particles have been exposed since the late 1960s. PMID:17336369

  2. Reverse micelle mediated synthesis, processing, mechanical and biological characterization of hydroxyapatite nanopowders for bone graft application

    Science.gov (United States)

    Banerjee, Ashis

    Hydroxyapatite (HA) is the most widely used bioceramic material in bone graft applications because of its compositional similarity with natural bone. However, synthetic HA does not show similar mechanical and biological properties to the inorganic component of bone. Properties of ceramic material depend on starting materials, processing techniques, densification and microstructure of the final product. The objective of this research was to process HA whisker reinforced HA composite using HA nanopowders and whiskers. HA nanopowders with different length scale and morphology were synthesized by reverse micelle system using NP5 and NP12 as surfactants and cyclohexane as organic solvent. The lowest average aspect ratio was 1.357+/-0.39 with average particle size of 66 nm and the highest average aspect ratio was 7.277+/-3.227 with average length of 150 nm and width of 20 nm, were synthesized. Micron sized HA whiskers with aspect ratio between 20 and 50, average particle length of 15 mum and width of 400 nm was synthesized using urea as a precipitating agent. Desired microstructure was obtained after sintering with spherical HA nanopowder and whiskers along with dopants. Addition of whiskers decreased density of the sintered compacts. However, at 10 wt% whisker content sample showed microhardness and fracture toughness of 3.6 GPa and 1.5 MPa.m1/2, respectively, and a compressive strength of 80 MPa was obtained. Mineralization study in simulated body fluid (SBF) showed formation of apatite layer on the dense HA compacts indicating a good tendency of bond formation with natural bone. Cytotoxicity results showed excellent cell attachment on the HA surface. In the Appendices, 3 journal articles have been attached which describe synthesis, processing and characterization of undoped and doped PZT nanopowders. Free standing and agglomerated PZT nanopowders were synthesized by the sucrose templated method and the citrate nitrate autocombustion method. Particle size in the range

  3. Synthesis, characterization and biological evaluation of novel Ru(II)-arene complexes containing intercalating ligands.

    Science.gov (United States)

    Nikolić, Stefan; Rangasamy, Loganathan; Gligorijević, Nevenka; Aranđelović, Sandra; Radulović, Siniša; Gasser, Gilles; Grgurić-Šipka, Sanja

    2016-07-01

    Three new ruthenium(II)-arene complexes, namely [(η(6)-p-cymene)Ru(Me2dppz)Cl]PF6 (1), [(η(6)-benzene)Ru(Me2dppz)Cl]PF6 (2) and [(η(6)-p-cymene)Ru(aip)Cl]PF6 (3) (Me2dppz=11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine; aip=2-(9-anthryl)-1H-imidazo[4,5-f] [1,10] phenanthroline) have been synthesized and characterized using different spectroscopic techniques including elemental analysis. The complexes were found to be well soluble and stable in DMSO. The biological activity of the three complexes was tested in three different human cancer cell lines (A549, MDA-MB-231 and HeLa) and in one human non-cancerous cell line (MRC-5). Complexes 1 and 3, carrying η(6)-p-cymene as the arene ligand, were shown to be toxic in all cell lines in the low micromolar/subnanomolar range, with complex 1 being the most cytotoxic complex of the series. Flow cytometry analysis revealed that complex 1 caused concentration- and time-dependent arrest of the cell cycle in G2-M and S phases in HeLa cells. This event is followed by the accumulation of the sub-G1 DNA content after 48h, in levels higher than cisplatin and in the absence of phosphatidylserine externalization. Fluorescent microscopy and acridine orange/ethidium bromide staining revealed that complex 1 induced both apoptotic and necrotic cell morphology characteristics. Drug-accumulation and DNA-binding studies performed by inductively coupled plasma mass spectrometry in HeLa cells showed that the total ruthenium uptake increased in a time- and concentration-dependent manner, and that complex 1 accumulated more efficiently than cisplatin at equimolar concentrations. The introduction of a Me2dppz ligand into the ruthenium(II)-p-cymene scaffold was found to allow the discovery of a strongly cytotoxic complex with significantly higher cellular uptake and DNA-binding properties than cisplatin. PMID:26818702

  4. Detection, Characterization, and Biological Effect of Quorum-Sensing Signaling Molecules in Peanut-Nodulating Bradyrhizobia

    Directory of Open Access Journals (Sweden)

    Walter Giordano

    2012-03-01

    Full Text Available Bacteria of the genus Bradyrhizobium are able to establish a symbiotic relationship with peanut (Arachis hypogaea root cells and to fix atmospheric nitrogen by converting it to nitrogenous compounds. Quorum sensing (QS is a cell-cell communication mechanism employed by a variety of bacterial species to coordinate behavior at a community level through regulation of gene expression. The QS process depends on bacterial production of various signaling molecules, among which the N-acylhomoserine lactones (AHLs are most commonly used by Gram-negative bacteria. Some previous reports have shown the production of QS signaling molecules by various rhizobia, but little is known regarding mechanisms of communication among peanut-nodulating strains. The aims of this study were to identify and characterize QS signals produced by peanut-nodulating bradyrhizobial strains and to evaluate their effects on processes related to cell interaction. Detection of AHLs in 53 rhizobial strains was performed using the biosensor strains Agrobacterium tumefaciens NTL4 (pZLR4 and Chromobacterium violaceum CV026 for AHLs with long and short acyl chains, respectively. None of the strains screened were found to produce AHLs with short acyl chains, but 14 strains produced AHLs with long acyl chains. These 14 AHL-producing strains were further studied by quantification of β-galactosidase activity levels (AHL-like inducer activity in NTL4 (pZLR4. Strains displaying moderate to high levels of AHL-like inducer activity were subjected to chemical identification of signaling molecules by high-performance liquid chromatography coupled to mass spectrometry (LC-MS/MS. For each AHL-producing strain, we found at least four different AHLs, corresponding to N-hexanoyl-DL-homoserine lactone (C6, N-(3-oxodecanoyl-L-homoserine lactone (3OC10, N-(3-oxododecanoyl-L-homoserine lactone (3OC12, and N-(3-oxotetradecanoyl-L-homoserine lactone (3OC14. Biological roles of 3OC10, 3OC12, and 3OC14 AHLs

  5. Novel antineoplastic platinum(IV) complexes: synthesis, characterization, biological investigations and structure-activity relationships

    International Nuclear Information System (INIS)

    Platinum(II) complexes represent one of the most widely used classes of cytostatics in anticancer chemotherapy. Their clinical effectiveness is accompanied by severe doselimiting side effects, intrinsic and/or acquired tumor resistance and the inconvenient and cost intensive way of intravenous administration. Platinum(IV) complexes also possess antitumor activity and their physicochemical and chemical properties could be utilized in order to overcome the main drawbacks of platinum(II)-based drugs. The successful design of platinum(IV) chemotherapeutics requires a careful examination of their pharmacology and toxicology, the formulation of structure-activity relationships and the development of new synthetic approaches. Within this PhD work, novel bis-, tris- and tetrakis(carboxylato)platinum(IV) complexes, designed as prodrugs for cis-[Pt(EtNH2)2Cl2] (cisplatin analogue with higher lipophilicity), carboplatin and nedaplatin were synthesized. For this purpose, the respective platinum(II) complexes were oxidized with H2O2 in aqueous media and further carboxylated using different cyclic anhydrides (succinic, glutaric, 3-methylglutaric and 3,3-dimethylglutaric anhydride). The resulting compounds were subsequently derivatized by activation of their free carboxylic groups with CDI (1,1’-carbonyldiimidazol), followed by reaction with various amines or alcohols, yielding the desired amides and esters, respectively. All complexes were fully characterized, using multinuclear (1H, 13C, 15N and 195Pt) 1D and 2D NMR spectroscopy, elemental analysis, ESI-MS, ATR-FTIR, HPLC and exemplarily X-ray diffraction for some of the compounds. In vitro cytotoxicity of the novel complexes was examined in four human tumor cell lines originating from ovarian carcinoma (CH1 and SK-OV-3), colon carcinoma (SW480) and non-small cell lung cancer (A549) by means of the MTT colorimetrical assay. Comparative analysis of the lipophilicity, electrochemistry and rate of reduction by ascorbic acid of

  6. Biologically active collagen-based scaffolds: advances in processing and characterization

    OpenAIRE

    Yannas, I.V.; Tzeranis, D. S.; Harley, B A; So, P. T. C.

    2010-01-01

    A small number of type I collagen–glycosaminoglycan scaffolds (collagen–GAG scaffolds; CGSs) have unusual biological activity consisting primarily in inducing partial regeneration of organs in the adult mammal. Two of these are currently in use in a variety of clinical settings. CGSs appear to induce regeneration by blocking the adult healing response, following trauma, consisting of wound contraction and scar formation. Several structural determinants of biological activity have been identif...

  7. Characterization of PAH-contaminated soils focusing on availability, chemical composition and biological effects

    OpenAIRE

    Bergknut, Magnus

    2006-01-01

    The risks associated with a soil contaminated by polycyclic aromatic hydrocarbons (PAHs) are generally assessed by measuring individual PAHs in the soil and correlating the obtained amounts to known adverse biological effects of the PAHs. The validity of such a risk estimation is dependent on the presence of additional compounds, the availability of the compounds (including the PAHs), and the methods used to correlate the measured chemical data and biological effects. In the work underlying t...

  8. Combustion and emissions characterization of terpenes with a view to their biological production in cyanobacteria

    OpenAIRE

    Hellier, P.; Al-Haj, L.; Talibi, M.; Purton, S.; Ladommatos, N.

    2013-01-01

    In developing future fuels there is an opportunity to make use of advances in many fields of science and engineering to ensure that such fuels are sustainable in both production and utilization. One such advance is the use of synthetic biology to re-engineer photosynthetic micro-organisms such that they are able to produce novel hydrocarbons directly from CO2. Terpenes are a class of hydrocarbons that can be produced biologically and have potential as liquid transport fuels. This paper presen...

  9. Evidence of a Biological Control over Origin, Growth and End of the Calcite Prisms in the Shells of Pinctada margaritifera (Pelecypod, Pterioidea

    Directory of Open Access Journals (Sweden)

    Jean-Pierre Cuif

    2014-12-01

    Full Text Available Consistently classified among the references for calcite simple prisms, the microstructural units that form the outer layer of the Pinctada margaritifera have been investigated through a series of morphological, crystallographical and biochemical characterizations. It is often said that the polygonal transverse shape of the prisms result from the competition for space between adjacent crystals. In contrast to this classical scheme the Pinctada prisms appear to be composed of four successive developmental stages from the concentrically growing disks on the internal side of the periostracum to the morphological, structural and compositional changes in both envelopes and mineral components at the end of the prisms. These latest structural and compositional changes predate nacre deposition, so that the end of prism growth is not caused by occurrence of nacre, but by metabolic changes in the secretory epithelium. This sequence makes obvious the permanent biological control exerted by the outer cell layer of the mantle in both organic envelopes and mineralizing organic phases.

  10. Scent of a mite: origin and chemical characterization of the lemon-like flavor of mite-ripened cheeses.

    Science.gov (United States)

    Brückner, Adrian; Heethoff, Michael

    2016-07-01

    Cheese infested with cheese mites is usually treated as unpalatable. Nevertheless, some traditional cheese manufactories in Germany and France intentionally use mites for fermentation of special varieties (i.e. Milbenkäse and Mimolette). While their production includes different mite species, both are characterized by a "lemon-like" flavor. However, the chemical nature and origin of this flavor-component is unknown. The cheese mites possess a pair of opisthosomal glands producing blends of hydrocarbons, terpenes and aromatics. Here, we describe the chemical profiles of the astigmatid mite species Tyrolichus casei (Milbenkäse) and Acarus siro (Mimolette). Although the chemical profiles differ in several aspects, both mite species produce neral (a volatile flavor component of lemon oil), which was absent from the headspace of both cheeses without mites. We conclude that the lemon-like flavor of mite cheese is not a consequence of fermentation of the cheese itself but a component from secretions of the cheese mites. PMID:27059866

  11. BIOLOGICAL CHARACTERIZATION OF Neomysis integer (Leach, 1815 FROM THE POMERANIAN BAY IN 2006–2007

    Directory of Open Access Journals (Sweden)

    Anna Grzeszczyk-Kowalska

    2014-04-01

    Full Text Available The aim of the study was to determine the biological characters typical of Neomysis integer, to investigate and update issues of its biology, ecology, and distribution in the southwestern Baltic Sea, and to compare biological properties of N. integer collected during eight study seasons in 2006–2007 in the region from Świnoujście to Darłowo. No link was established between N. integer size and sample collection site. The population attained sizes within the range of 2.64 to 18.84 mm. The size at which females achieved sexual maturity varied seasonally. A mean of 34 eggs was noted in the marsupium. The mean wet weight of N. integer was 0.011 g. Three generations were confirmed at most of the study sites.

  12. Characterization of protected designation of origin Italian meat products obtained from heavy pigs fed barley-based diets.

    Science.gov (United States)

    Prandini, A; Sigolo, S; Gallo, A; Faeti, V; Della Casa, G

    2015-09-01

    A study was conducted to evaluate the quality and sensory properties of protected designation of origin (PDO) Parma ham and Piacentina neck obtained from heavy pigs (Italian Duroc × Italian Large White) fed barley-based diets. Four diets were tested: 1) a corn-based diet (control), 2) the control diet with 80% of a normal-amylose hulled barley variety (Cometa), 3) the control diet with 80% of a normal-amylose hulless barley variety (Astartis), and 4) the control diet with 80% of a low-amylose hulless barley variety (Alamo). All the meat products were analyzed for physicochemical and color parameters. The dry-cured hams and necks were also evaluated for sensory properties. The data of physicochemical, color, and sensory parameters were separately analyzed by multivariate factor analysis, and interpretation of each extracted factor was based on specific original variables loading on each one. The meat products obtained from pigs fed the barley-based diets differed from those obtained from the control pigs on the PUFA factors characterized by C18:2-6 and omega-3:omega-6 ratio. In particular, the meat products obtained from pigs fed the barley-based diets had a lower content of C18:2-6 and a higher omega-3:omega-6 ratio ( < 0.05) than the control. In fresh hams, iodine number and SFA (C16:0 and C18:0) in addition to PUFA and omega-3:omega-6 ratio loaded on the PUFA/SFA factor. The fresh hams produced from pigs fed the barley-based diets had subcutaneous fat (SC) with a lower iodine number and a higher SFA level compared with those produced from the control pigs ( < 0.05). A sex effect was measured for PUFA/SFA and oleic acid factors. In particular, the barrow SC had a lower SFA content, higher PUFA and C18:1-9 levels, and a higher iodine number ( < 0.05) than the gilt SC. There were no appreciable differences in the color and sensory properties of meat products obtained from pigs fed the different diets. The hams from barrows differed from those obtained from gilts on

  13. Characterization of marine intrusion and origin of the mineralization in the oriental coastal aquifer of Cap Bon (Tunisia)

    International Nuclear Information System (INIS)

    The determination of the origin of the salinisation in the plio-quaternary oriental coastal aquifer of Cap Bon (North-East of Tunisia), and the understanding of its hydrogeological and geochemical behaviours were studied by the geochemical and isotopic tools. The climate of the region is semi-arid to sub-humid and of Mediterranean type. The long-term mean annual rainfall varies between 400 and 500 mm, and the mean annual potential evaporation is about 1100 mm. The over exploitation of the aquifer is characterized by the decrease of piezometry in the study area, reducing the discharge rate to the sea, and a continuous degradation of the chemical quality of water. Depression cones in various places have dropped to 5 to 10 m below sea level, which confirms the inversion of the hydraulic gradient and the invasion of seawater. The chloride is strongly correlated to the sodium for the majority of the samples. The predominance of sodium and chloride is explained by the proximity of the sea, via sea spray and/or a progress of seawater intrusion. The 18O-2H plot shows that the composition of 18O in the groundwater can be divided in two groups. In the first one the composition of 18O varies between -4.3 and -5.5 per mille, this group is located between the global meteoric water line and the local water line; the hypothesis of an important contribution of the present rains to the recharge is probable. The second group is composed by the wells located in the region of the piezometric depression, near the sea where the salinity can reach 30 g/L. These waters are more enriched in 18O and 2H and fall on the mixing line of seawater; confirm the existence of marine origin. The results of hydro-geochemical and isotopic studies suggested that the salinity is especially acquired by the dissolution of minerals through the return of water irrigation water in the aquifer system, by the contamination of nitrates and by a mixture with seawater, in particular in the area of Korba and

  14. Understanding the Biological Roles of Pectins in Plants through Physiological and Functional Characterizations of Plant and Fungal Mutants

    DEFF Research Database (Denmark)

    Stranne, Maria

    The plant cell wall is a dynamic structure and it is involved in regulating a number of physiological features of plants such as physical strength, growth, cell differentiation, intercellular communication, water movement and defense responses. Pectins constitute a major class of plant cell wall...... aspects remain elusive. Studies described in this thesis aimed at gaining new insights into the biological roles of pectin acetylation and arabinosylation in the model plant Arabidopsis thaliana. The thesis consists of four chapters: physiological characterization of cell wall mutants affected in cell...... polysaccharides and consist of backbones rich in galacturonic acids, which are decorated with a range of functional groups including acetyl esters and arabinan sidechains. Although much effort has been made to uncover biological functions of pectins in plants and remarkable progresses have taken place, many...

  15. Treatment of complex biological mixtures with pulsed electric fields An energy transfer characterization

    International Nuclear Information System (INIS)

    Sewage sludge from waste water treatment plants is a complex biological mixture and a problematic by-product because of valorisation restrictions. In order to limit its production, pulsed electric fields (PEF) were studied because of their biological effects and their potentially physico-chemical action. This work demonstrated a paradoxical phenomenon: cell lysis triggered a respirometric activation followed by a delayed lethality. This phenomenon was related to the leakage of internal compounds which were immediately bio-assimilated. At high energy expense, the plasmic membrane permeabilization led to cell death. Practically, with the technical configuration of the equipment, no hydrolysis was detected. This limitation decreases the interest for excess sludge reduction, but for the same reason, PEF cold sterilization technique can be assessed as a promising process. The representation of the electric energy transfer from electrodes to cell was exchanged by the study of mass transfer from the biological cell to the surrounding media under an electromotive force. Thus, the survival rate was modelled by a Sherwood number taking account of electrical, biological and hydraulic parameters. (author)

  16. Characterization, Distribution, Sources and Origins of Aliphatic Hydrocarbons from Surface Sediment of Prai Strait, Penang, Malaysia: A Widespread Anthropogenic Input

    Directory of Open Access Journals (Sweden)

    Mahyar Sakari

    2008-07-01

    Full Text Available Persistent organic pollutants such as petroleum hydrocarbons are one of the most serious and important class of pollutants that face to many countries including Malaysia. Aliphatic hydrocarbons contain straight chain alkane; derive from anthropogenic and natural sources to the marine environment. The multi-purpose strait of Prai is located in the Northwest of Peninsular Malaysia plays an important economic role in the Southeast Asia. Twenty surface sediment samples were collected using Eckman dredge to measure the concentration and determine the characterization, sources and origins of the aliphatic hydrocarbons in December 2006. Samples (top 4 cm were extracted with Soxhlet, treated with activated copper and subjected to 2 steps column chromatography for purification and fractionation. Alkane fraction injected into Gas Chromatography–Flame Ionization Detector (GC-FID for instrumental analysis. The results showed that total n-alkane concentrations are ranging from 512 to 10770 ng/mg d. w. Carbon Preferences Index (CPI revealed an extreme widespread anthropogenic input and naturally derived (CPI= 0 to 4.88 hydrocarbons in the study area. The ratio of C31/C19 indicated that natural hydrocarbons are generating from terrestrial vascular plants and transferring by rivers. The characteristics of Major Hydrocarbons provided evidences that oil and its derivatives either fresh or degraded are the major contributors of the pollution in the study area. Statistical approaches also confirmed that 85% of study area affected by oil sources of pollution. It is seen that aliphatic hydrocarbons mostly transfer by lateral input to the marine environment than atmospheric movements.

  17. ABCG2-overexpressing S1-M1-80 cell xenografts in nude mice keep original biochemistry and cell biological properties

    Institute of Scientific and Technical Information of China (English)

    Fang Wang; Yong-Ju Liang; Xing-Ping Wu; Xiao-Dong Su; Li-Wu Fu

    2012-01-01

    S1-M1-80 cells,derived from human colon carcinoma S1 cells,are mitoxantrone-selected ABCG2-overexpressing cells and are widely used in in vitro studies of multidrug resistance (MDR).In this study,S1-M1-80 cell xenografts were established to investigate whether the MDR phenotype and cell biological properties were maintained in vivo.Our results showed that the proliferation,cell cycle,and ABCG2 expression level in S1-M1-80 cells were similar to those in cells isolated from S1-M1-80 cell xenografts (named xS1-M1-80 cells).Consistently,xS1-M1-80 cells exhibited high levels of resistance to ABCG2 substrates such as mitoxantrone and topotecan,but remained sensitive to the non-ABCG2 substrate cisplatin.Furthermore,the specific ABCG2 inhibitor Ko143 potently sensitized xS1-M1-80 cells to mitoxantrone and topotecan.These results suggest that S1-M1-80 cell xenografts in nude mice retain their original cytological characteristics at 9 weeks.Thus,this model could serve as a good system for further investigation of ABCG2-mediated MDR.

  18. Characterization of Multiwalled Carbon Nanotubes Dispersing in Water and Association with Biological Effects

    OpenAIRE

    Xuelian Cheng; Jun Zhong; Jie Meng; Man Yang; Fumin Jia; Zhen Xu; Hua Kong; Haiyan Xu

    2011-01-01

    Biomedical application potentials of carbon nanotubes-based materials have been investigated intensively in recent years; however, characterization and metrology are still facing great technical challenges when the materials are intended to be used as carriers for therapeutics in aqueous solutions. Systematic characterization on the dispersing carbon nanotubes is urgently required and therefore of significance. In this paper multiwalled carbon nanotubes (MWCNTs) with different average lengths...

  19. Synthesis, Characterization, and Biological Activity of 5-Phenyl-1,3,4-thiadiazole-2-amine Incorporated Azo Dye Derivatives

    Directory of Open Access Journals (Sweden)

    Chinnagiri T. Keerthi Kumar

    2013-01-01

    Full Text Available 5-Phenyl-1,3,4-thiadiazole-2-amine has been synthesized by single step reaction. A series of heterocyclic azodyes were synthesized by diazotisation of 5-phenyl-1,3,4-thiadiazole-2-amine by nitrosyl sulphuric acid followed by coupling with different coupling compounds such as 8-hydroxyquinoline, 2,6-diaminopyridine, 2-naphthol, N,N-dimethyl aniline, resorcinol, and 4,6-dihydroxypyrimidine. The dyes were characterized by UV-Vis, IR, 1H-NMR, 13C NMR, and elemental analysis. The synthesized compounds were also screened for biological activity.

  20. Efficiently functionalized oxacalix[4]arenes: Synthesis, characterization and exploration of their biological profile as novel HDAC inhibitors.

    Science.gov (United States)

    Mehta, Viren; Athar, Mohd; Jha, P C; Panchal, Manthan; Modi, Krunal; Jain, V K

    2016-02-01

    A series of novel substituted oxacalix[4]arene has been synthesized and explored for their biological profile by evaluating anticancer, antifungal and antibacterial properties. The derivatives have been characterized by various spectroscopic techniques such as IR, (1)H NMR, (13)C NMR and Mass spectrometry. Many compounds showed strong inhibition (MIC) in the range of ∼0-50 μM with interesting cytotoxic activities against Hela cells in particular. The compounds were theoretically evaluated by docking studies as potential histone deacetylase inhibitors (HDACi). The study indicates that compounds bound adequately with HDAC, and hence complemented the experimental findings. PMID:26725026

  1. Cu(II AND Zn(II COMPLEX COMPOUNDS WITH BIGUANIDES AROMATIC DERIVATIVES. SYNTHESIS, CHARACTERIZATION, BIOLOGICAL ACTIVITY

    Directory of Open Access Journals (Sweden)

    Ticuţa Negreanu-Pîrjol

    2011-05-01

    Full Text Available In this paper we report the synthesis, physical-chemical characterization and antimicrobial activity of some new complex compounds of hetero-aromatic biguanides ligands, chlorhexidine base (CHX and chlorhexidine diacetate (CHXac2 with metallic ions Cu(II and Zn(II, in different molar ratio. The synthesized complexes were characterized by elemental chemical analysis and differential thermal analysis. The stereochemistry of the metallic ions was determined by infrared spectra, UV-Vis, EPR spectroscopy and magnetic susceptibility in the aim to establish the complexes structures. The biological activity of the new complex compounds was identified in solid technique by measuring minimum inhibition diameter of bacterial and fungal culture, against three standard pathogen strains, Escherichia coli ATCC 25922, Staphilococcus aureus ATCC 25923 and Candida albicans ATCC 10231. The results show an increased specific antimicrobial activity for the complexes chlorhexidine:Cu(II 1:1 and 1:2 compared with the one of the Zn(II complexes.

  2. Characterization of the angular memory effect of scattered light in biological tissues

    CERN Document Server

    Schott, Sam; Léger, Jean-Francois; Bourdieu, Laurent; Gigan, Sylvain

    2015-01-01

    High resolution optical microscopy is essential in neuroscience but suffers from scattering in biological tissues. It therefore grants access to superficial layers only. Recently developed techniques use scattered photons for imaging by exploiting angular correlations in transmitted light and could potentially increase imaging depths. But those correlations (`angular memory effect') are of very short range and, in theory, only present behind and not inside scattering media. From measurements on neural tissues and complementary simulations, we find that strong forward scattering in biological tissues can enhance the memory effect range (and thus the possible field-of-view) by more than an order of magnitude compared to isotropic scattering for $\\sim$1\\,mm thick tissue layers.

  3. An Approximate Numerical Technique for Characterizing Optical Pulse Propagation in Inhomogeneous Biological Tissue

    Directory of Open Access Journals (Sweden)

    Chintha C. Handapangoda

    2008-01-01

    Full Text Available An approximate numerical technique for modeling optical pulse propagation through weakly scattering biological tissue is developed by solving the photon transport equation in biological tissue that includes varying refractive index and varying scattering/absorption coefficients. The proposed technique involves first tracing the ray paths defined by the refractive index profile of the medium by solving the eikonal equation using a Runge-Kutta integration algorithm. The photon transport equation is solved only along these ray paths, minimizing the overall computational burden of the resulting algorithm. The main advantage of the current algorithm is that it enables to discretise the pulse propagation space adaptively by taking optical depth into account. Therefore, computational efficiency can be increased without compromising the accuracy of the algorithm.

  4. Mechanical–biological treatment: Performance and potentials. An LCA of 8 MBT plants including waste characterization

    DEFF Research Database (Denmark)

    Montejo, Cristina; Tonini, Davide; Márquez, María del Carmen;

    2013-01-01

    In the endeavour of avoiding presence of biodegradable waste in landfills and increasing recycling, mechanical–biological treatment (MBT) plants have seen a significant increase in number and capacity in the last two decades. The aim of these plants is separating and stabilizing the quickly...... biodegradable fraction of the waste as well as recovering recyclables from mixed waste streams. In this study the environmental performance of eight MBT-based waste management scenarios in Spain was assessed by means of life cycle assessment. The focus was on the technical and environmental performance of the...... MBT plants. These widely differed in type of biological treatment and recovery efficiencies. The results indicated that the performance is strongly connected with energy and materials recovery efficiency. The recommendation for upgrading and/or commissioning of future plants is to optimize materials...

  5. Characterization and in vitro biological effects of concentrated particulate matter from Mexico City

    Science.gov (United States)

    De Vizcaya-Ruiz, A.; Gutiérrez-Castillo, M. E.; Uribe-Ramirez, M.; Cebrián, M. E.; Mugica-Alvarez, V.; Sepúlveda, J.; Rosas, I.; Salinas, E.; Garcia-Cuéllar, C.; Martínez, F.; Alfaro-Moreno, E.; Torres-Flores, V.; Osornio-Vargas, A.; Sioutas, C.; Fine, P. M.; Singh, M.; Geller, M. D.; Kuhn, T.; Miguel, A. H.; Eiguren-Fernandez, A.; Schiestl, R. H.; Reliene, R.; Froines, J.

    Coarse and fine particles were collected using an ambient particle concentrator (VACES system) in the north, center and south regions of Mexico City during May and November of 2003 with the aim of collecting enough particulate matter (PM) to examine their chemical and physical characteristics, biological content, and toxicity potential. The chemical, morphological and biological composition of PM was determined, together with the redox activity, induction of apoptosis and DNA damage. Carbonaceous species determined by thermal-optical transmittance (TOT) showed that the highest concentrations were found in PM 2.5 from the north and in PM 10 from the center. When analyzed by inductively coupling plasma (ICP), levels of metals were higher in the coarse fraction, mainly in the north. Morphological analysis by Scanning Electron Microscope & Energy Dispersive X-ray Spectrometer (SEM-EDX) is shown. Bacteria, fungi and endotoxin were present mostly in the coarse samples from the north. Fine PM had higher redox activity, than the coarse PM assessed by the dithiothreitol (DTT) assay. Early apoptotic cell death assessed by annexin V was observed in A549 cells exposed to PM from all regions, particularly with those collected in May. The fine fraction from the south induced higher apoptotic cell death compared to the coarse fraction, in contrast, the coarse fraction from the north induced significantly higher apoptosis than the fine fraction. All PM samples induced DNA damage assessed by the comet assay on THP-1 cells when exposed to a concentration of 10 μg/mL, the highest DNA damage was produced by both particle fractions collected in the north in May and November. In conclusion, PM from the north showed a higher metal and biological content, apoptotic cell death induction and more extensive DNA damage. Also, fine PM fractions from all sampled regions showed more redox activity than the coarse fraction. In summary, location, season and size of PM collection influenced their

  6. Characterization of Liposomes Used as Model System of Biological Membranes by Glassy Carbon Electrode

    Czech Academy of Sciences Publication Activity Database

    Parisová, Martina; Navrátil, Tomáš; Šestáková, Ivana; Barek, J.

    Ústí nad Labem : Best servis, 2013 - (Navrátil, T.; Fojta, M.; Pecková, K.), s. 139-143 ISBN 978-80-905221-1-4. [Moderní elektrochemické metody /33./. Jetřichovice (CZ), 20.05.2013-24.05.2013] R&D Projects: GA ČR(CZ) GAP208/12/1645 Institutional support: RVO:61388955 Keywords : Liposomes * transport * Biological membranes Subject RIV: CG - Electrochemistry

  7. Development and characterization of grating-coupled surface plasmon resonance sensors for medical and biological applications

    OpenAIRE

    Pasqualotto, Elisabetta

    2014-01-01

    The core of my research activity during the Ph.D. period has been the study and the development of Surface Plasmon Resonance (SPR) based sensors for the detection of molecules of biological and medical interest. In particular, between the different configurations allowing plasmon excitation, I have focused my research on the study of nanostructured gratings, which allow to achieve a higher sensitivity than the prism coupled sensors and to miniaturize the measurement system. First my act...

  8. Macroscopic characterization of cell electroporation in biological tissue based on electrical measurements

    Science.gov (United States)

    Cima, Lionel F.; Mir, Lluis M.

    2004-11-01

    A method is described to experimentally determine the temporal evolution of state variables involved in the electroporation of biological tissue, i.e., the transmembrane voltage and the macroscopic current flowing in the electropores. Indeed, the electrical parameters of the extracellular, intracellular, and unaltered membrane contributions as well as the electropores electrical characteristics can be deduced from the measurement of the tissue bioimpedance and from the variations of both the macroscopic voltage applied to the tissue and the delivered current.

  9. Synthesis, Characterization and Biological Applications of Water-Soluble ZnO Quantum Dots

    OpenAIRE

    Schneider, Raphaël; Balan, Lavinia; Aldeek, Fadi

    2011-01-01

    Quantum dots (QDs) or semiconductor nanocrystals are of great interest to fundamental studies but have also potential applications as biological probes (Medintz et al., 2005), fluorescent biosensor (Costa-Fernandez et al., 2006), light-emitting diodes (LEDs) (Lim et al. 2007), and solar cells (Robel et al., 2006). Owing to the effect of quantum confinement, QDs show exceptional physical and chemical properties such as sharp and symmetrical emission spectra, high quantum yield (QY), good photo...

  10. A bottom-up characterization of transfer functions for synthetic biology designs: lessons from enzymology

    OpenAIRE

    Carbonell-Ballestero, M.; Duran-Nebreda, S.; Montanez, R.; Sole, R.; Macia, J.; Rodriguez-Caso, C.

    2014-01-01

    Within the field of synthetic biology, a rational design of genetic parts should include a causal understanding of their input-output responses—the so-called transfer function—and how to tune them. However, a commonly adopted strategy is to fit data to Hill-shaped curves without considering the underlying molecular mechanisms. Here we provide a novel mathematical formalization that allows prediction of the global behavior of a synthetic device by considering the actual information from the in...

  11. Soluble Expression and Characterization of Biologically Active Bacillus anthracis Protective Antigen in Escherichia coli

    OpenAIRE

    Nagendra Suryanarayana; Vanlalhmuaka,; Bharti Mankere; Monika Verma; Kulanthaivel Thavachelvam; Urmil Tuteja

    2016-01-01

    Bacillus anthracis secretory protein protective antigen (PA) is primary candidate for subunit vaccine against anthrax. Attempts to obtain large quantity of PA from Escherichia coli expression system often result in the formation of insoluble inclusion bodies. Therefore, it is always better to produce recombinant proteins in a soluble form. In the present study, we have obtained biologically active recombinant PA in small scale E. coli shake culture system using three different expression cons...

  12. Soluble Expression and Characterization of Biologically Active Bacillus anthracis Protective Antigen in Escherichia coli

    Directory of Open Access Journals (Sweden)

    Nagendra Suryanarayana

    2016-01-01

    Full Text Available Bacillus anthracis secretory protein protective antigen (PA is primary candidate for subunit vaccine against anthrax. Attempts to obtain large quantity of PA from Escherichia coli expression system often result in the formation of insoluble inclusion bodies. Therefore, it is always better to produce recombinant proteins in a soluble form. In the present study, we have obtained biologically active recombinant PA in small scale E. coli shake culture system using three different expression constructs. The PA gene was cloned in expression vectors bearing trc, T5, and T7 promoters and transformed into their respective E. coli hosts. The growth conditions were optimized to obtain maximum expression of PA in soluble form. The expression construct PA-pET32c in DE3-pLysS E. coli host resulted in a maximum production of soluble PA (15 mg L−1 compared to other combinations. Purified PA was subjected to trypsin digestion and binding assay with lethal factor to confirm the protein’s functionality. Biological activity was confirmed by cytotoxicity assay on J774.1 cells. Balb/c mice were immunized with PA and the immunogenicity was tested by ELISA and toxin neutralization assay. This study highlights the expression of soluble and biologically active recombinant PA in larger quantity using simpler E. coli production platform.

  13. Soluble Expression and Characterization of Biologically Active Bacillus anthracis Protective Antigen in Escherichia coli.

    Science.gov (United States)

    Suryanarayana, Nagendra; Vanlalhmuaka; Mankere, Bharti; Verma, Monika; Thavachelvam, Kulanthaivel; Tuteja, Urmil

    2016-01-01

    Bacillus anthracis secretory protein protective antigen (PA) is primary candidate for subunit vaccine against anthrax. Attempts to obtain large quantity of PA from Escherichia coli expression system often result in the formation of insoluble inclusion bodies. Therefore, it is always better to produce recombinant proteins in a soluble form. In the present study, we have obtained biologically active recombinant PA in small scale E. coli shake culture system using three different expression constructs. The PA gene was cloned in expression vectors bearing trc, T5, and T7 promoters and transformed into their respective E. coli hosts. The growth conditions were optimized to obtain maximum expression of PA in soluble form. The expression construct PA-pET32c in DE3-pLysS E. coli host resulted in a maximum production of soluble PA (15 mg L(-1)) compared to other combinations. Purified PA was subjected to trypsin digestion and binding assay with lethal factor to confirm the protein's functionality. Biological activity was confirmed by cytotoxicity assay on J774.1 cells. Balb/c mice were immunized with PA and the immunogenicity was tested by ELISA and toxin neutralization assay. This study highlights the expression of soluble and biologically active recombinant PA in larger quantity using simpler E. coli production platform. PMID:26966576

  14. Synthesis, mechanical and biological characterization of ionic doped carbonated hydroxyapatite/β-tricalcium phosphate mixtures.

    Science.gov (United States)

    Kannan, S; Vieira, S I; Olhero, S M; Torres, P M C; Pina, S; da Cruz e Silva, O A B; Ferreira, J M F

    2011-04-01

    The influence of ionic substituents in calcium phosphates intended for bone and tooth replacement biomedical applications is an important research topic, owing to the essential roles played by trace elements in biological processes. The present study investigates the mechanical and biological evaluation of ionic doped hydroxyapatite/β-tricalcium phosphate mixtures which have been prepared by a simple aqueous precipitation method. Heat treating the resultant calcium phosphates in a carbonated atmosphere led to the formation of ionic doped carbonated hydroxyapatite/β-tricalcium phosphate mixtures containing the essential ions of biological apatite. The structural analysis determined by Rietveld refinement confirmed the presence of hydroxyapatite as the main phase, together with a considerable amount of β-tricalcium phosphate. Such phase assemblage is essentially due to the influence of substituted ions during synthesis. The results from mechanical tests proved that carbonate substitutions are detrimental for the mechanical properties of apatite-based ceramics. In vitro proliferation assays of osteoblastic-like cells (MC3T3-E1 cell line) to powders revealed that carbonate incorporation can either delay or accelerate MC3T3 proliferation, although reaching the same proliferation levels as control cells after 2 weeks in culture. Further, the powders enable pre-osteoblastic differentiation in a similar manner to control cells, as indirectly measured by ALP activity and Type-I collagen medium secretion. PMID:21146640

  15. Multilevel systems biology modeling characterized the atheroprotective efficiencies of modified dairy fats in a hamster model.

    Science.gov (United States)

    Martin, Jean-Charles; Berton, Amélie; Ginies, Christian; Bott, Romain; Scheercousse, Pierre; Saddi, Alessandra; Gripois, Daniel; Landrier, Jean-François; Dalemans, Daniel; Alessi, Marie-Christine; Delplanque, Bernadette

    2015-09-01

    We assessed the atheroprotective efficiency of modified dairy fats in hyperlipidemic hamsters. A systems biology approach was implemented to reveal and quantify the dietary fat-related components of the disease. Three modified dairy fats (40% energy) were prepared from regular butter by mixing with a plant oil mixture, by removing cholesterol alone, or by removing cholesterol in combination with reducing saturated fatty acids. A plant oil mixture and a regular butter were used as control diets. The atherosclerosis severity (aortic cholesteryl-ester level) was higher in the regular butter-fed hamsters than in the other four groups (P < 0.05). Eighty-seven of the 1,666 variables measured from multiplatform analysis were found to be strongly associated with the disease. When aggregated into 10 biological clusters combined into a multivariate predictive equation, these 87 variables explained 81% of the disease variability. The biological cluster "regulation of lipid transport and metabolism" appeared central to atherogenic development relative to diets. The "vitamin E metabolism" cluster was the main driver of atheroprotection with the best performing transformed dairy fat. Under conditions that promote atherosclerosis, the impact of dairy fats on atherogenesis could be greatly ameliorated by technological modifications. Our modeling approach allowed for identifying and quantifying the contribution of complex factors to atherogenic development in each dietary setup. PMID:26071539

  16. Structural characterization of chitin and chitosan obtained by biological and chemical methods.

    Science.gov (United States)

    Pacheco, Neith; Garnica-Gonzalez, Mónica; Gimeno, Miquel; Bárzana, Eduardo; Trombotto, Stéphane; David, Laurent; Shirai, Keiko

    2011-09-12

    Chitin production was biologically achieved by lactic acid fermentation (LAF) of shrimp waste (Litopenaeus vannameii) in a packed bed column reactor with maximal percentages of demineralization (D(MIN)) and deproteinization (D(PROT)) after 96 h of 92 and 94%, respectively. This procedure also afforded high free astaxanthin recovery with up to 2400 μg per gram of silage. Chitin product was also obtained from the shrimp waste by a chemical method using acid and alkali for comparison. The biologically obtained chitin (BIO-C) showed higher M(w) (1200 kDa) and crystallinity index (I(CR)) (86%) than the chemically extracted chitin (CH-C). A multistep freeze-pump-thaw (FPT) methodology was applied to obtain medium M(w) chitosan (400 kDa) with degree of acetylation (DA) ca. 10% from BIO-C, which was higher than that from CH-C. Additionally, I(CR) values showed the preservation of crystalline chitin structure in BIO-C derivatives at low DA (40-25%). Moreover, the FPT deacetylation of the attained BIO-C produced chitosans with bloc copolymer structure inherited from a coarse chitin crystalline morphology. Therefore, our LAF method combined with FPT proved to be an affective biological method to avoid excessive depolymerization and loss of crystallinity during chitosan production, which offers new perspective applications for this material. PMID:21790136

  17. Study of primary biological aerosols to characterize their diversity in particulate matter over the Indian tropical region: assessment for climatic and health impact

    Science.gov (United States)

    Priyamvada R, H.; Muthalagu, A.; R, R.; Verma, R. S.; Philip, L.; Desprès, V.; Poeschl, U.; Gunthe, S. S.

    2015-12-01

    Primary Biological Aerosol Particles (PBAPs) are ubiquitous in the Earth's atmosphere and can influence the biosphere, climate, and public health (Després et al., 2012).To study the importance of the PBAPs, it is important to have an understanding about their origin, seasonal abundance and diversity. The study of PBAPs over the Indian tropical region becomes important as it hosts ~ 18% of the world population and has a distinct climate with a systematic and cyclic monsoon season which is different from the continental climates in Europe and America. In this study, the PBAPs were characterized by the application of molecular genetic techniques involving DNA extraction, PCR amplifications, cloning and DNA sequencing. In addition, characterization of the fungal source emissions was performed to better understand the diversity, abundance, and relative contribution of the fungal aerosols. For the present study, DNA analysis was performed on a one-year air filter set of PM10 (particulate matter ≤10 mm) covering three distinct meteorological seasons, i.e. summer, monsoon, and winter. The results from DNA analysis revealed the presence of bacteria and fungi in the filter samples. The fungal source characterization performed by the DNA analysis revealed the ratio of Basidiomycota to Ascomycota to be 96:4, which is consistent with previously reported studies from airborne fungal communities in the European continental boundary layer air (Fröhlich-Nowoisky et al., 2009). In the study region, the highest species richness was found to be present in the family Agaricaceae (25.3%) followed by Polyporaceae (15.3%) and Marasmiaceae (10.81%). Agaricaceae, Polyporaceae and Psathyrellaceae were dominant families in the study region and the families like Clavariaceae, Nectriaceae, Phanerochaetachae, Pleurotaceae and Strophariaceae were found to be rare. The results will next be compared with the diversity and types of the fungi found in ambient PM10. More details will be presented.

  18. Nanoparticular iron complex drugs for parenteral administration - physicochemical characterization, biological distribution and pharmacological safety

    OpenAIRE

    Fütterer, Sören

    2014-01-01

    Iron deficiency is the most common deficiency disease worldwide with many patients who require intravenous iron. Within the last years new kind of parenteral iron complexes as well as generic preparations entered the market. There is a high demand for methods clarifying benefit to risk profiles of old and new iron complexes. It is also necessary to disclose interchangeability between originator and intended copies to avoid severe anaphylactic and anaphylactoid side reaction and assure equival...

  19. Isolation and characterization of biologically metal-doped protein as semiconducting biopolymer

    International Nuclear Information System (INIS)

    Metal-doped (Cu2O, CdO and PbO) muscle protein from fish (Clarious batracus Lin.) was isolated, purified and characterized for its potential as semiconducting biopolymer. The initial characterization of the isolated protein was carried out by circular dichrosim (CD), FTIR and AAS. Protein thin film was prepared using polyvinyl alcohol (PVA) and characterized for its surface morphology by SEM/EDAX and crystallinity by XRD spectrum. The physical properties such as Raman shift, optical coefficient and electron transfer reaction such as electrical conductivity, temperature dependent conductivity and cyclic voltammeter (CV) were studied. The present study concludes that the Cd and Cu-doped fish protein behaves like semiconductor and has the potential application in molecular electronics like protein semiconductors, protein based (proton exchange membrane) fuel cell, drug delivery and nanotechnology

  20. Isotopic characterization and genetic origin of crude oils from Gulf of Suez and western desert fields in Egypt

    International Nuclear Information System (INIS)

    Stable carbon isotopes were used to asses the general characteristics of the western desert and Gulf of Suez crude oils in accordance with hydrocarbon generation, source rocks, thermal gradient and maturation level. The carbon isotopic results of all the analyzed oil samples in both areas lie in the range from -29.62 to -24.11 %. The av. σ 13C values in the Gulf of Suez reaches about -28.6% and -26.4% in western desert. It was accounted a marginal difference between the two areas by about 2.5 : 3% in carbon-13 isotope of the whole oil indicated two distinct oil types of different organic input and varies in the depositional environment. It was found that Gulf of Suez oils are dominated by marine organic matter (plankton algae) deposited in saline environment. The derived oils from the northern and central provinces of the Gulf are isotopically light, higher in sulfur content, lower in API gravity degree and have Pristane/Phytane (Pr/Ph) ratio less than or equal one (Pr/Ph = 1). In the southern province, about 0.5% isotopic enrichment was recorded in the produced oils from shallower depths, associated with gradual increment in API and maturity level as thermal gradient increase. However, low API gravity degree and less maturity of the Gulf of Suez oils could be related to the rifting temperature that forced and accelerated the expulsion rate and hydrocarbon generation prior reaching higher maturation levels. On the other hand, the produced oils from the western desert fields belong mostly to terrestrial organic debris (with minor marine fragment in some basins) deposited at deeper geological formations. It is characterized by isotopic enrichment, paraffinic waxy oils, low in sulphur content, have Pr/Ph = 1, high in API gravity and maturity level. Hydrocarbon generated from the western desert fields has been controlled by time-temperature effect in the source rocks and reservoirs where the humic organic matter are affected by high temperature over longer period of

  1. Isolation, Characterization and Biological Evaluation of Jellyfish Collagen for Use in Biomedical Applications

    Directory of Open Access Journals (Sweden)

    Claire Lethias

    2011-06-01

    Full Text Available Fibrillar collagens are the more abundant extracellular proteins. They form a metazoan-specific family, and are highly conserved from sponge to human. Their structural and physiological properties have been successfully used in the food, cosmetic, and pharmaceutical industries. On the other hand, the increase of jellyfish has led us to consider this marine animal as a natural product for food and medicine. Here, we have tested different Mediterranean jellyfish species in order to investigate the economic potential of their collagens. We have studied different methods of collagen purification (tissues and experimental procedures. The best collagen yield was obtained using Rhizostoma pulmo oral arms and the pepsin extraction method (2–10 mg collagen/g of wet tissue. Although a significant yield was obtained with Cotylorhiza tuberculata (0.45 mg/g, R. pulmo was used for further experiments, this jellyfish being considered as harmless to humans and being an abundant source of material. Then, we compared the biological properties of R. pulmo collagen with mammalian fibrillar collagens in cell cytotoxicity assays and cell adhesion. There was no statistical difference in cytotoxicity (p > 0.05 between R. pulmo collagen and rat type I collagen. However, since heparin inhibits cell adhesion to jellyfish-native collagen by 55%, the main difference is that heparan sulfate proteoglycans could be preferentially involved in fibroblast and osteoblast adhesion to jellyfish collagens. Our data confirm the broad harmlessness of jellyfish collagens, and their biological effect on human cells that are similar to that of mammalian type I collagen. Given the bioavailability of jellyfish collagen and its biological properties, this marine material is thus a good candidate for replacing bovine or human collagens in selected biomedical applications.

  2. Characterizing culturable microflora of nectarines: bacteria and their potential for biological control of postharvest fruit decay

    Science.gov (United States)

    Microorganisms isolated from fruit surfaces have been used to control postharvest decays of fruit. However, there is little information on microflora colonizing surfaces of fruits other than grapes, apples, and citrus. We characterized bacterial microflora on nectarine fruit surfaces during fruit ...

  3. Wastewater and Biomass Characterization for the Activated Sludge Model No. 2: Biological Phosphorus Removal

    DEFF Research Database (Denmark)

    Henze, Mogens; Gujer, W.; Mino, T.; Matsuo, T.; Wentzel, M. C.; Marais, G. v. R.

    1995-01-01

    The characterization of wastewater and biomass in relation to the Activated Sludge Model No. 2 is described. A new fraction of organic fermentable matter is needed. Phosphate accumulating organisms and their structural compounds polyphosphate and polyhydroxyalkanoate have to be included in the...

  4. Characterization of chemical, biological and antiproliferative properties of fermented black carrot juice, shalgam

    Science.gov (United States)

    Shalgam juice is a dark red-colored and sour fermented beverage produced and consumed in Turkey. The main ingredient of shalgam juice is black carrot, which is rich in anthocyanins. In this study, commercially available shalgam juice was characterized by determining its chemical composition and anti...

  5. Wastewater and Biomass Characterization for the Activated Sludge Model No. 2: Biological Phosphorus Removal

    DEFF Research Database (Denmark)

    Henze, Mogens; Gujer, W.; Mino, T.;

    1995-01-01

    The characterization of wastewater and biomass in relation to the Activated Sludge Model No. 2 is described. A new fraction of organic fermentable matter is needed. Phosphate accumulating organisms and their structural compounds polyphosphate and polyhydroxyalkanoate have to be included in the bi...

  6. Characterization of solid UV cross-linked PEGDA for biological applications

    KAUST Repository

    Castro, David

    2013-10-20

    This paper reports on solid UV cross-linked Poly(ethylene)-glycol-diacrylate (PEGDA) as a material for microfluidic devices for biological applications. We have evaluated biocompatibility of PEGDA through two separate means: 1) by examining cell viability and attachment on cross-linked PEGDA surfaces for cell culture applications, and 2) by determining if cross-linked PEGDA inhibits the polymerase chain reaction (PCR) processes for on-chip PCR. Through these studies a correlation has been found between degree of curing and cell viability, attachment, as well as on PCR outcome.

  7. Comparison of Biological and Immunological Characterization of Lipopolysaccharides From Brucella abortus RB51 and S19

    OpenAIRE

    Kianmehr, Zahra; Kaboudanian Ardestani, Sussan; Soleimanjahi, Hoorieh; Fotouhi, Fatemeh; Alamian, Saeed; Ahmadian, Shahin

    2015-01-01

    Background: Brucella abortus RB51 is a rough stable mutant strain, which has been widely used as a live vaccine for prevention of brucellosis in cattle instead of B. abortus strain S19. B. abortus lipopolysaccharide (LPS) has unique properties in comparison to other bacterial LPS. Objectives: In the current study, two types of LPS, smooth (S-LPS) and rough (R-LPS) were purified from B. abortus S19 and RB51, respectively. The aim of this study was to evaluate biological and immunological prope...

  8. Syntheses, Characterization, Physical and Biological Properties of Long-chain, Water-soluble, Dendritic Amphiphiles

    OpenAIRE

    Williams, André Arvin

    2008-01-01

    In this project, we have designed and synthesized a new series of long-chain, water-soluble, dendritic, anionic amphiphiles [3CAmn, RCONHC(CH2CH2COOH)3, R= CnH2n+1] to alleviate the low aqueous solubility of fatty acids. The dendritic-tricarboxlyato headgroup improves aqueous solubility and allows us to measure the intrinsic biological activity of our amphiphiles without the potential hindrance of low aqueous solubility. The aqueous solubilities of the anionic amphiphiles have been measured...

  9. Microwave-assisted synthesis, characterization and biological activity of novel pyrazole derivatives

    Directory of Open Access Journals (Sweden)

    Theivendren Panneer Selvam

    2014-12-01

    Full Text Available A series of 1-(4-substitutedphenyl-3-phenyl-1H-pyrazole-4-carbaldehydes 4a–l have been synthesized and tested for their biological activities. Formation of the pyrazole derivatives was achieved by treating with Vilsmeier-Haack reagent. The newly synthesized compounds were evaluated for their anti-inflammatory and analgesic activities compared to Diclofenac sodium as standard drug. Compounds 4g, 4i and 4k exhibited the maximum anti-inflammatory and analgesic activities. The detailed synthesis, spectroscopic and toxicity data are reported.

  10. Biological and serological characterization of the C-type RNA viruses isolated from the C57BL/Ka strain of mice; 2. Induction and propagation of the isolates

    International Nuclear Information System (INIS)

    Several classes of C-type RNA viruses have been isolated from the tissues of C57BL/Ka mice. Normal lymphocytes and haemopoietic tissues, lymphoid tumors induced by X-rays or virus inoculation, and embryo fibroblast cultures have yielded an array of virus preparations with distinct biological and serological characteristics. The type of virus isolated depends on the cell of origin and on the procedures used for viral induction, isolation, and propagation. Parallel studies in vivo and in vitro indicate that some isolates are thymotropic and leukemogenic (TL+), while others which replicate well on fibroblastic cells in vitro (fibrotropism) lack TL activity in vivo. The thymotropic, leukemogenic isolates lose their TL activity, partially or totally, when passaged in fibroblastic cells, and the emerging virus has significantly different characteristics. This report describes the procedures of induction, isolation, and propagation which yield these two distinctively different classes of virus isolates, and characterizes their biological activities in vivo and in vitro

  11. Characterization of Adaptation by Morphology in a Planar Biological Network of Plasmodial Slime Mold

    Science.gov (United States)

    Ito, Masateru; Okamoto, Riki; Takamatsu, Atsuko

    2011-07-01

    Growth processes of a planar biological network of plasmodium of a true slime mold, Physarum polycephalum, were analyzed quantitatively. The plasmodium forms a transportation network through which protoplasm conveys nutrients, oxygen, and cellular organelles similarly to blood in a mammalian vascular network. To analyze the network structure, vertices were defined at tube bifurcation points. Then edges were defined for the tubes connecting both end vertices. Morphological analysis was attempted along with conventional topological analysis, revealing that the growth process of the plasmodial network structure depends on environmental conditions. In an attractive condition, the network is a polygonal lattice with more than six edges per vertex at the early stage and the hexagonal lattice at a later stage. Through all growing stages, the tube structure was not highly developed but an unstructured protoplasmic thin sheet was dominantly formed. The network size is small. In contrast, in the repulsive condition, the network is a mixture of polygonal lattice and tree-graph. More specifically, the polygonal lattice has more than six edges per vertex in the early stage, then a tree-graph structure is added to the lattice network at a later stage. The thick tube structure was highly developed. The network size, in the meaning of Euclidean distance but not topological one, grows considerably. Finally, the biological meaning of the environment-dependent network structure in the plasmodium is discussed.

  12. Purification and characterization of biologically active recombinant human Eppin expressed in Escherichia coli

    Institute of Scientific and Technical Information of China (English)

    ZHU Qing-yi; GU Xiao-jian; YANG Jin; WANG Jun-hong; TANG Bo; WU Hong-fei

    2008-01-01

    Background Eppin(epididymis protease inhibitor)appears to play an important role in primate fertility.However,the function of Eppin and its antibody in men and its relationship with men's infertility are poorly studied.To reveal the significance and possibility of detection of anti-Eppin antibody in clinical infertilty cases,we developed an Escherichia coli expression system for the expression of biologically actire human Eppin.Methods The human Eppin gene was cloned into PET-28a(+)vector after induction with 0.5 mmol/L isopropy-β-D-thiogalactoside(IPTG)at 26℃ for 4 hours,and the expressed fusion protein His6-Eppin was purified by Ni2+ affinity chromatography.Afterwards,six female 8-week-old Balb/c mice were immunized with purified His6-Eppin for three weeks.Their sera were collected and polyclonal antibodies against His6-Eppin were purified,all of which were further verified by Western-blot and immunofluorescence analysis.Results About 18.33 mg His6-Eppin was obtained from 1-L flask culture.The produced polyclonal antibodies against His6-Eppin recognized the Eppin protein both in human epididymis and in HEK293T cells by over-expression of the recombinant human Eppin.Conclusion The purified His6-Eppin protein has biological activity,which might be a candidate for clinical diagnosis of infertility and development of male immuno-contraceptive agents.

  13. Mechanical-biological treatment: performance and potentials. An LCA of 8 MBT plants including waste characterization.

    Science.gov (United States)

    Montejo, Cristina; Tonini, Davide; Márquez, María del Carmen; Astrup, Thomas Fruergaard

    2013-10-15

    In the endeavour of avoiding presence of biodegradable waste in landfills and increasing recycling, mechanical-biological treatment (MBT) plants have seen a significant increase in number and capacity in the last two decades. The aim of these plants is separating and stabilizing the quickly biodegradable fraction of the waste as well as recovering recyclables from mixed waste streams. In this study the environmental performance of eight MBT-based waste management scenarios in Spain was assessed by means of life cycle assessment. The focus was on the technical and environmental performance of the MBT plants. These widely differed in type of biological treatment and recovery efficiencies. The results indicated that the performance is strongly connected with energy and materials recovery efficiency. The recommendation for upgrading and/or commissioning of future plants is to optimize materials recovery through increased automation of the selection and to prioritize biogas-electricity production from the organic fraction over direct composting. The optimal strategy for refuse derived fuel (RDF) management depends upon the environmental compartment to be prioritized and the type of marginal electricity source in the system. It was estimated that, overall, up to ca. 180-190 kt CO2-eq. y(-1) may be saved by optimizing the MBT plants under assessment. PMID:23850761

  14. Expression and biological characterization of an anti-CD20 biosimilar candidate antibody: a case study.

    Science.gov (United States)

    Dorvignit, Denise; Palacios, Julio L; Merino, Maylin; Hernández, Tays; Sosa, Katya; Casaco, Angel; López-Requena, Alejandro; Mateo de Acosta, Cristina

    2012-01-01

    The CD20 molecule is a non-glycosylated protein expressed mainly on the surface of B lymphocytes. In some pathogenic B cells, it shows an increased expression, thus becoming an attractive target for diagnosis and therapy. Rituximab is a chimeric antibody that specifically recognizes the human CD20 molecule. This antibody is indicated for the treatment of non-Hodgkin lymphomas and autoimmune diseases, such as rheumatoid arthritis and systemic lupus erythematosus. In this work, we describe the stable expression and biological evaluation of an anti-CD20 biosimilar antibody. While rituximab is produced in fed-batch culture of recombinant Chinese hamster ovary (CHO) cells, our biosimilar antibody expression process consists of continuous culture of recombinant murine NS0 myeloma cells. The ability of the purified biosimilar antibody to recognize the CD20 molecule on human tumor cell lines, as well as on peripheral blood mononuclear cells from humans and primates, was demonstrated by flow cytometry. The biosimilar antibody induced complement-dependent cytotoxicity, antibody-dependent cell-mediated cytotoxicity and apoptosis on human cell lines with high expression of CD20. In addition, this antibody depleted CD20-positive B lymphocytes from peripheral blood in monkeys. These results indicate that the biological properties of the biosimilar antibody compare favorably with those of the innovator product, and that it should be evaluated in future clinical trials. PMID:22647435

  15. Expression and biological characterization of an anti-CD20 biosimilar candidate antibody

    Science.gov (United States)

    Dorvignit, Denise; Palacios, Julio L.; Merino, Maylin; Hernández, Tays; Sosa, Katya; Casacó, Angel; López-Requena, Alejandro; Mateo de Acosta, Cristina

    2012-01-01

    The CD20 molecule is a non-glycosylated protein expressed mainly on the surface of B lymphocytes. In some pathogenic B cells, it shows an increased expression, thus becoming an attractive target for diagnosis and therapy. Rituximab is a chimeric antibody that specifically recognizes the human CD20 molecule. This antibody is indicated for the treatment of non-Hodgkin lymphomas and autoimmune diseases, such as rheumatoid arthritis and systemic lupus erythematosus. In this work, we describe the stable expression and biological evaluation of an anti-CD20 biosimilar antibody. While rituximab is produced in fed-batch culture of recombinant Chinese hamster ovary (CHO) cells, our biosimilar antibody expression process consists of continuous culture of recombinant murine NS0 myeloma cells. The ability of the purified biosimilar antibody to recognize the CD20 molecule on human tumor cell lines, as well as on peripheral blood mononuclear cells from humans and primates, was demonstrated by flow cytometry. The biosimilar antibody induced complement-dependent cytotoxicity, antibody-dependent cell-mediated cytotoxicity and apoptosis on human cell lines with high expression of CD20. In addition, this antibody depleted CD20-positive B lymphocytes from peripheral blood in monkeys. These results indicate that the biological properties of the biosimilar antibody compare favorably with those of the innovator product, and that it should be evaluated in future clinical trials. PMID:22647435

  16. Milligram production and biological activity characterization of the human chemokine receptor CCR3.

    Directory of Open Access Journals (Sweden)

    Mingqing Wang

    Full Text Available Human chemokine receptor CCR3 (hCCR3 belongs to the G protein-coupled receptors (GPCRs superfamily of membrane proteins and plays major roles in allergic diseases and angiogenesis. In order to study the structural and functional mechanism of hCCR3, it is essential to produce pure protein with biological functions on a milligram scale. Here we report the expression of hCCR3 gene in a tetracycline-inducible stable mammalian cell line. A cell clone with high hCCR3 expression was selected from 46 stably transfected cell clones and from this cell line pure hCCR3 on a milligram scale was obtained after two-step purification. Circular dichroism spectrum with a characteristic shape and magnitude for α-helix indicated proper folding of hCCR3 after purification. The biological activity of purified hCCR3 was verified by its high binding affinity with its endogenous ligands CCL11 and CCL24, with K D in the range of 10(-8 M to 10(-6 M.

  17. Characterization of Botanical and Geographical Origin of Corsican “Spring” Honeys by Melissopalynological and Volatile Analysis

    OpenAIRE

    Yin Yang; Marie-José Battesti; Jean Costa; Julien Paolini

    2014-01-01

    Pollen spectrum, physicochemical parameters and volatile fraction of Corsican “spring” honeys were investigated with the aim of developing a multidisciplinary method for the qualification of honeys in which nectar resources are under-represented in the pollen spectrum. Forty-one Corsican “spring” honeys were certified by melissopalynological analysis using directory and biogeographical origin of 50 representative taxa. Two groups of honeys were distinguished according to the botanical origin ...

  18. The isolation, enumeration, and characterization of Rhizobium bacteria of the soil in Wamena Biological Garden

    Directory of Open Access Journals (Sweden)

    SRI PURWANINGSIH

    2005-04-01

    Full Text Available The eleven soil samples have been isolated and characterized. The aims of the study were to get the pure culture and some data which described about enumeration and especially their characters in relation to the acids and bases reaction in their growth. The isolation of the bacteria use Yeast Extract Mannitol Agar medium (YEMA while the characterization by using YEMA medium mixed with Brom Thymol Blue and Congo Red indicators respectively. The results showed that eighteen isolates have been isolated which consisted of three low growing and fifteen fast growing bacteria. Two isolates were not indicated Rhizobium and sixteen were Rhizobium. Density of Rhizobium enumeration was varied which related to soil organic matter content. The enumeration bacteria in YEMA medium were in the range of 0.6 x 105 and 11.6 x 105 CFU /g soil. The highest population was found in soil sample of Wieb vegetation.

  19. Isolation and characterization of soil Streptomyces species as potential biological control agents against fungal plant pathogens.

    Science.gov (United States)

    Evangelista-Martínez, Zahaed

    2014-05-01

    The use of antagonist microorganisms against fungal plant pathogens is an attractive and ecologically alternative to the use of chemical pesticides. Streptomyces are beneficial soil bacteria and potential candidates for biocontrol agents. This study reports the isolation, characterization and antagonist activity of soil streptomycetes from the Los Petenes Biosphere Reserve, a Natural protected area in Campeche, Mexico. The results showed morphological, physiological and biochemical characterization of six actinomycetes and their inhibitory activity against Curvularia sp., Aspergillus niger, Helminthosporium sp. and Fusarium sp. One isolate, identified as Streptomyces sp. CACIS-1.16CA showed the potential to inhibit additional pathogens as Alternaria sp., Phytophthora capsici, Colletotrichum sp. and Rhizoctonia sp. with percentages ranging from 47 to 90 %. This study identified a streptomycete strain with a broad antagonist activity that could be used for biocontrol of plant pathogenic fungi. PMID:24310522

  20. Chemical characterization and evaluation of biological activity of Cynara cardunculus extractable compounds

    OpenAIRE

    Ramos, Patrícia Alexandra Bogango

    2015-01-01

    The Mediterranean species Cynara cardunculus L. is recognized in the traditional medicine, for their hepatoprotective and choleretic effects. Biomass of C. cardunculus L. var. altilis (DC), or cultivated cardoon, may be explored not only for the production of energy and pulp fibers, but also for the extraction of bioactive compounds. The chemical characterization of extractable components, namely terpenic and phenolic compounds, may valorize the cultivated cardoon plantation, due to their ant...

  1. Immunochemical and Biological Characterization of Three Capsular Polysaccharides from a Single Bacteroides fragilis Strain

    OpenAIRE

    Wiltrud M Kalka-Moll; Wang, Ying(School of Physics, Shandong University, Jinan, 250100, PR China); Comstock, L. E.; Gonzalez, Sylvia E.; Tzianabos, Arthur O.; Dennis L Kasper

    2001-01-01

    Although Bacteroides fragilis accounts for only 0.5% of the normal human colonic flora, it is the anaerobic species most frequently isolated from intra-abdominal and other infections with an intestinal source. The capsular polysaccharides of B. fragilis are part of a complex of surface polysaccharides and are the organism's most important virulence factors in the formation of intra-abdominal abscesses. Two capsular polysaccharides from strain NCTC 9343, PS A1 and PS B1, have been characterize...

  2. Molecular biology of rotaviruses. III. Isolation and characterization of temperature-sensitive mutants of bovine rotavirus.

    OpenAIRE

    Faulkner-Valle, G P; Clayton, A V; McCrae, M A

    1982-01-01

    Twenty-six temperature-sensitive (ts) mutants of United Kingdom tissue culture-adapted bovine rotavirus were isolated and characterized. Fourteen of these mutants were determined to be ts both by efficiency of plating and by virus yield at the nonpermissive temperature of 39.5 degrees C as compared with that at the permissive temperature of 32 degrees C. The remaining mutants were only ts by the criterion of efficiency of plating. High-frequency recombination (gene reassortment) was observed ...

  3. Biosurfactant produced from Actinomycetes nocardiopsis A17: Characterization and its biological evaluation.

    Science.gov (United States)

    Chakraborty, Samrat; Ghosh, Mandakini; Chakraborti, Srijita; Jana, Sougata; Sen, Kalyan Kumar; Kokare, Chandrakant; Zhang, Lixin

    2015-08-01

    This investigation aims to isolate an Actinomycetes strain producing a biosurfactant from the unexplored region of industrial and coal mine areas. Actinomycetes are selected for this study as their novel chemistry was not exhausted and they have tremendous potential to produce bioactive secondary metabolites. The biosurfactant was characterized and further needed to be utilized for pharmaceutical dosage form. Isolation, purification, screening, and characterization of the Actinomycetes A17 were done followed by its fermentation in optimized conditions. The cell-free supernatant was used for the extraction of the biosurfactant and precipitated by cold acetone. The dried precipitate was purified by TLC and the emulsification index, surface tension and CMC were determined. The isolated strain with preferred results was identified as Actinomycetes nocardiopsis A17 with high foam-forming properties. It gives lipase, amylase, gelatinase, and protease activity. The emulsification index was found to be 93±0.8 with surface tension 66.67 dyne/cm at the lowest concentration and cmc 0.6 μg/ml. These biosurfactants were characterized by Fourier transform infra red (FT-IR) spectroscopy and liquid chromatography-mass spectrometry (LC-MS). Therefore, it can be concluded that the biosurfactant produced by Actinomycetes nocardiopsis sp. strain A17 was found to have satisfactory results with high surface activity and emulsion-forming ability. PMID:25989147

  4. Characterization and biological activities of extracellular melanin produced by Schizophyllum commune (Fries).

    Science.gov (United States)

    Arun, G; Eyini, M; Gunasekaran, P

    2015-06-01

    Melanins are enigmatic pigments produced by a wide variety of microorganisms including bacteria and fungi. Here, we have isolated and characterized extracellular melanin from mushroom fungus, Schizophyllum commune. The extracellular dark pigment produced by the broth culture of S. commune, after 21 days of incubation was recovered by hot acid-alkali treatment. The melanin nature of the pigment was characterized by biochemical tests and further, confirmed by UV, IR, EPR, NMR and MALDI-TOF Mass Spectra. Extracellular melanin, at 100 μg/ml, showed significant antibacterial activity against Escherichia coli, Bacillus subtilis, Klebsiella pneumoniae and Pseudomonas fluorescens and antifungal activity against Trichophyton simii and T. rubrum. At a concentration of 50 μg/ml, melanin showed high free radical scavenging activity of DPPH (2,2-diphenyl-1-picrylhydrazyl) indicating its antioxidant potential. It showed concentration dependent inhibition of cell proliferation of Human Epidermoid Larynx Carcinoma Cell Line (HEP-2). This study has demonstrated characterization of melanin from basidiomycetes mushroom fungus, Schizophyllum commune and its applications. PMID:26155678

  5. Biological characterization of cultured dermal papilla cells and hair follicle regeneration in vitro and in vivo

    Institute of Scientific and Technical Information of China (English)

    Lü Zhong-fa; CAI Sui-qing; WU Jin-jin; ZHENG Min

    2006-01-01

    Background Dermal papilla cells (DPC) are a group of mesenchyme-derived cells at the base of the hair follicle, where they regulate and control hair follicle growth through the expression and secretion of cytokines. Nevertheless, the role of DPC derived chemokines and other cytokines in the hair follicle biology remain speculative. In this study, we investigated the expression of basic fibroblast growth factor (bFGF), endothelin-1 (ET-1) and stem cell factor (SCF) in different passages of cultured DPC and their effects on the biological behaviour of DPC.Methods The expression of bFGF, ET-1 and SCF in different passages of cultured DPC and their possible effects on the biological behavior of DPC are investigated using in situ hybridization and immunochemistry. In addition, we performed transplantation of hair follicle cells into nude mice. The cultured DPC, dermal sheath cells and fibroblast of human scalp, respectively, were mixed with cells of the hair follicle epithelium in different ratios, and then were cultured in hair follicle organotypic cultures or implanted into the subcutis of nude mice.Results The expression of ET-1 and SCF in early passages of cultured DPC became stronger, but turned weaker and even negative in late passages (>6 passages). Hair follicle-like structures were formed after DPC combined with the cells of hair follicle epithelium cells in hair follicle organotypic cultures. When hair follicle organotypic cultures were implanted into the subcutis of nude mice, the relative intact hair follicles were formed. After the transplantation of hair follicle cells into the nude mice, the hair follicle-like structure was formed in the group that contained DPC mixed with hair follicle epithelium cells. However, no hair follicles were formed in the other two groups. It was found that the higher the expression of ET-1 and SCF in DPC, the stronger the ability of DPC to induce hair follicle regeneration.Conclusions The cultured DPC can induce hair follicle

  6. Combined LIBS-Raman for remote detection and characterization of biological samples

    Science.gov (United States)

    Anderson, Aaron S.; Mukundan, Harshini; McInroy, Rhonda E.; Clegg, Samuel M.

    2015-03-01

    Laser-Induced Breakdown Spectroscopy (LIBS) and Raman Spectroscopy have rich histories in the analysis of a wide variety of samples in both in situ and remote configurations. Our team is working on building a deployable, integrated Raman and LIBS spectrometer (RLS) for the parallel elucidation of elemental and molecular signatures under Earth and Martian surface conditions. Herein, results from remote LIBS and Raman analysis of biological samples such as amino acids, small peptides, mono- and disaccharides, and nucleic acids acquired under terrestrial and Mars conditions are reported, giving rise to some interesting differences. A library of spectra and peaks of interest were compiled, and will be used to inform the analysis of more complex systems, such as large peptides, dried bacterial spores, and biofilms. These results will be presented and future applications will be discussed, including the assembly of a combined RLS spectroscopic system and stand-off detection in a variety of environments.

  7. Characterization of Radiation Fields in Biological Shields of Nuclear Power Plants for Assessing Concrete Degradation

    Energy Technology Data Exchange (ETDEWEB)

    Remec, Igor [ORNL; Rosseel, Thomas M [ORNL; Field, Kevin G [ORNL; Pape, Yann Le [Oak Ridge National Laboratory (ORNL)

    2016-01-01

    Life extensions of nuclear power plants to 60 and potentially 80 years of operation have renewed interest in long-term material degradation. One material being considered is concrete with a particular focus on radiation-induced effects. Based on the projected neutron fluence (E > 0.1 MeV) values in the concrete biological shields of the US PWR fleet and the available data on radiation effects on concrete, some decrease in mechanical properties of concrete cannot be ruled out during extended operation beyond 60 years. An expansion of the irradiated concrete database and a reliable determination of relevant neutron fluence energy cutoff value are necessary to assure reliable risk assessment for NPPs extended operation.

  8. Mueller matrix polarimetry for the characterization of complex random medium like biological tissues

    Indian Academy of Sciences (India)

    Nirmalya Ghosh; Jalpa Soni; M F G Wood; M A Wallenberg; I A Vitkin

    2010-12-01

    The polarization parameters of light scattered from biological tissues contain wealth of morphological and functional information of potential biomedical importance. But, in optically thick turbid media such as tissues, numerous complexities due to multiple scattering and simultaneous occurrences of many polarization events present formidable challenges, in terms of both accurate measurement and unique interpretation of the individual polarimetry characteristics. We have developed and validated an expanded Mueller matrix decomposition approach to overcome this problem. The approach was validated theoretically with a polarization-sensitive Monte Carlo light propagation model and experimentally by recording Mueller matrices from tissue-like complex random medium. In this paper, we discuss our comprehensive turbid polarimetry platform consisting of the experimental polarimetry system, forward Monte Carlo modelling and inverse polar decomposition analysis. Initial biomedical applications of this novel general method for polarimetry analysis in random media are also presented.

  9. Characterization of microbial communities in pest colonized books by molecular biology tools

    Directory of Open Access Journals (Sweden)

    Franco Palla

    2011-08-01

    Full Text Available This work presents the identification of bacteria and fungi colonies in insect infesting books, by cultural-independent methodologies based on molecular biology techniques. Microbial genomic DNA extraction, in vitro amplification of specific target sequences by polymerase chain reactions (PCR, sequencing and sequence analysis were performed. These procedures minimized the samples amount, optimized the diagnostic studies on bacteria and fungi colonization and allowed the identification of many species also in complex microbial consortia. The molecular techniques for sure accomplish and integrate the microbiological standard methods (in vitro culture and morphological analyses (OM, SEM, CLSM, in order to understand the role of microorganisms in bio-deterioration of cultural assets. This monitoring is also indispensable to shed light on the risk for visitors and/or professionals to contract potential illnesses within indoor environments.

  10. Characterization of the Hanford 300 area burial grounds. Task IV. Biological transport

    International Nuclear Information System (INIS)

    The characteristics of radioactive waste burial sites at the 300 area burial grounds on the Department of Energy's Hanford Site, southeastern Washington were studied. The potential vectors of radionuclide transport studied were vegetation and animals. The overall results showed a low potential for uptake and transport of radionuclides from the 300 area sites. However, additional methods to control physical and biological mechanisms may contribute to the effectiveness of waste burial practices. From the results, the Biological Transport task recommended field studies which include reduction of soil erosion and addition of biobarriers to plants and animals. Vegetation plays a major role in reducing soil erosion, and thereby maintaining the backfill over the burial sites. Of the several species found on the 300 area sites, cheatgrass (Bromus tectorum) appears to be the most desirable as a cover. Besides retarding erosion, it has a shallow root system (does not easily penetrate buried material); it has a low affinity for radionuclide uptake; and its tissues are not easily blown away. Small mammals (specifically, mice) appear to have the most potential for radionuclide exposure and uptake. Small mammals were live-trapped within 10 x 10-meter trap grids. Each animal trapped was surgically implanted with a thermoluminescent dosimeter. When the animal was recaptured, the dosimeter was removed and read for exposure. Exposures were reported in milli-Roentgens. The most consistently trapped small mammals were the Great Basin pocket mouse (Perognathus parvus) and the deer mouse (Peromyscus maniculatus). Results from the dosimeter readings showed that some of those animals had higher than background exposures. Biobarriers to animals could be considered as a mechanism to reduce the potential for radionuclide transport

  11. Physicochemical and Biological Characterization of Fucoidan from Fucus vesiculosus Purified by Dye Affinity Chromatography.

    Science.gov (United States)

    Zayed, Ahmed; Muffler, Kai; Hahn, Thomas; Rupp, Steffen; Finkelmeier, Doris; Burger-Kentischer, Anke; Ulber, Roland

    2016-04-01

    A comparative study concerning the physicochemical, monomeric composition and biological characters among different fucoidan fractions is presented. Common purification techniques for fucoidan usually involve many steps. During these steps, the important structural features might be affected and consequently alter its biological activities. Three purified fractions were derived from Fucus vesiculosus water extract which, afterwards, were purified by a recently-developed dye affinity chromatography protocol. This protocol is based on dye-sulfated polysaccharide interactions. The first two fractions were obtained from crude precipitated fucoidan at different pH values of the adsorption phase: pH 1 and 6. This procedure resulted in fucoidan_1 and 6 fractions. The other, third, fraction: fucoidan_M, however, was obtained from a buffered crude extract at pH 1, eliminating the ethanol precipitation step. All of the three fractions were then further evaluated. Results revealed that fucoidan_M showed the highest sulfur content (S%), 12.11%, with the lowest average molecular weight, 48 kDa. Fucose, galactose, and uronic acid/glucose dimers were detected in all fractions, although, xylose was only detected in fucoidan_1 and 6. In a concentration of 10 µg·mL(-1), Fucoidan_6 showed the highest heparin-like anticoagulant activity and could prolong the APTT and TT significantly to 66.03 ± 2.93 and 75.36 ± 1.37 s, respectively. In addition, fucoidan_M demonstrated the highest potency against HSV-1 with an IC50 of 2.41 µg·mL(-1). The technique proved to be a candidate for fucoidan purifaction from its crude extract removing the precipitation step from common purification protocols and produced different fucoidan qualities resulted from the different incubation conditions with the immobilized thiazine toluidine blue O dye. PMID:27092514

  12. Establishment and Biological Characterization of a Panel of Glioblastoma Multiforme (GBM) and GBM Variant Oncosphere Cell Lines

    Science.gov (United States)

    Binder, Zev A.; Wilson, Kelli M.; Salmasi, Vafi; Orr, Brent A.; Eberhart, Charles G.; Siu, I-Mei; Lim, Michael; Weingart, Jon D.; Quinones-Hinojosa, Alfredo; Bettegowda, Chetan; Kassam, Amin B.; Olivi, Alessandro; Brem, Henry; Riggins, Gregory J.; Gallia, Gary L.

    2016-01-01

    Objective Human tumor cell lines form the basis of the majority of present day laboratory cancer research. These models are vital to studying the molecular biology of tumors and preclinical testing of new therapies. When compared to traditional adherent cell lines, suspension cell lines recapitulate the genetic profiles and histologic features of glioblastoma multiforme (GBM) with higher fidelity. Using a modified neural stem cell culture technique, here we report the characterization of GBM cell lines including GBM variants. Methods Tumor tissue samples were obtained intra-operatively and cultured in neural stem cell conditions containing growth factors. Tumor lines were characterized in vitro using differentiation assays followed by immunostaining for lineage-specific markers. In vivo tumor formation was assayed by orthotopic injection in nude mice. Genetic uniqueness was confirmed via short tandem repeat (STR) DNA profiling. Results Thirteen oncosphere lines derived from GBM and GBM variants, including a GBM with PNET features and a GBM with oligodendroglioma component, were established. All unique lines showed distinct genetic profiles by STR profiling. The lines assayed demonstrated a range of in vitro growth rates. Multipotency was confirmed using in vitro differentiation. Tumor formation demonstrated histologic features consistent with high grade gliomas, including invasion, necrosis, abnormal vascularization, and high mitotic rate. Xenografts derived from the GBM variants maintained histopathological features of the primary tumors. Conclusions We have generated and characterized GBM suspension lines derived from patients with GBMs and GBM variants. These oncosphere cell lines will expand the resources available for preclinical study. PMID:27028405

  13. Characterization of Staphylococcus aureus from Humans and a Comparison with İsolates of Animal Origin, in North Dakota, United States

    OpenAIRE

    Valeria Velasco; Esra Buyukcangaz; Sherwood, Julie S.; Ryan M Stepan; Koslofsky, Ryan J.; Logue, Catherine M

    2015-01-01

    Different clones of methicillin-susceptible (MSSA) and methicillin-resistant (MRSA) Staphylococcus aureus have been found in humans as well as in animals and retail meat. However, more information about the genetic characteristics and similarities between strains is needed. The aim of this study was to identify and characterize Staphylococcus aureus from humans, and to compare their characteristics with isolates of animal origin. A total of 550 nasal swabs were taken from healthy humans, and ...

  14. Design, synthesis and biological characterization of a new class of osteogenic (1H)-quinolone derivatives.

    Science.gov (United States)

    Manetti, Fabrizio; Petricci, Elena; Gabrielli, Annalisa; Mann, Andrè; Faure, Hélène; Gorojankina, Tatiana; Brasseur, Laurent; Hoch, Lucile; Ruat, Martial; Taddei, Maurizio

    2016-10-01

    Smoothened (Smo) is the signal transducer of the Hedgehog (Hh) pathway and its stimulation is considered a potential powerful tool in regenerative medicine to treat severe tissue injuries. Starting from GSA-10, a recently reported Hh activator acting on Smo, we have designed and synthesized a new class of quinolone-based compounds. Modification and decoration of three different portions of the original scaffold led to compounds able to induce differentiation of multipotent mesenchymal cells into osteoblasts. The submicromolar activity of several of these new quinolones (0.4-0.9 μM) is comparable to or better than that of SAG and purmorphamine, two reference Smo agonists. Structure-activity relationships allow identification of several molecular determinants important for the activity of these compounds. PMID:27429255

  15. Understanding peptide biology: The discovery and characterization of the novel hormone, neuronostatin.

    Science.gov (United States)

    Yosten, Gina L C; Elrick, Mollisa M; Salvatori, Alison; Stein, Lauren M; Kolar, Grant R; Ren, Jun; Corbett, John A; Samson, Willis K

    2015-10-01

    The Human Genome Project provided the opportunity to use bioinformatic approaches to discover novel, endogenous hormones. Using this approach we have identified two novel peptide hormones and review here our strategy for the identification and characterization of the hormone, neuronostatin. We describe in this mini-review our strategy for determining neuronostatin's actions in brain, heart and pancreas. More importantly, we detail our deductive reasoning strategy for the identification of a neuronostatin receptor and our progress in establishing the physiological relevance of the peptide. PMID:26051024

  16. Quantitative characterization for dielectrophoretic behavior of biological cells using optical tweezers

    Science.gov (United States)

    Park, In Soo; Hee Park, Se; Woo Lee, Sang; Sung Yoon, Dae; Kim, Beop-Min

    2014-02-01

    We report a method to precisely quantify dielectrophoretic (DEP) forces and cutoff frequencies (fc) of viable and nonviable yeast cells. The method consists of a two-step process in which generated DEP forces act upon a cell through a micro-electrode device, followed by direct measurement of DEP forces using optical tweezers. DEP behaviors of viable and nonviable yeast cells are monitored as a function of AC frequency. We believe that the proposed method can be used as a powerful platform for cell-based assays to characterize the DEP behavior of various cell types including cancer and normal cells.

  17. Synthesis, characterization and biological studies of 1,7- dinaphthyl heptanoids and their metal chelates

    OpenAIRE

    S. Sindhu; Seena Thomachan; V D John

    2015-01-01

    The present investigation includes the synthesis, characterization, antitumour and antimicrobial activities of three new curcuminoid analogues and their metal chelates. Curcuminoid analogues and their metal chelates have great ability to act as antitumour and antimicrobial agents which motivated us and lead to this present work. The new curcuminoid analogues namely 1,7-di(1-naphthyl)-1,6-heptadiene-3,5-dione (1a), 1,7-di(2-methoxy 1-naphthyl)-1,6-heptadiene-3,5-dione (1b), 1,7-di(2-hydroxy ...

  18. Photonic Crystal Optical Tweezers with High Efficiency for Live Biological Samples and Viability Characterization

    Science.gov (United States)

    Jing, Peifeng; Wu, Jingda; Liu, Gary W.; Keeler, Ethan G.; Pun, Suzie H.; Lin, Lih Y.

    2016-01-01

    We propose and demonstrate a new optical trapping method for single cells that utilizes modulated light fields to trap a wide array of cell types, including mammalian, yeast, and Escherichia coli cells, on the surface of a two-dimensional photonic crystal. This method is capable of reducing the required light intensity, and thus minimizing the photothermal damage to living cells, thereby extending cell viability in optical trapping and cell manipulation applications. To this end, a thorough characterization of cell viability in optical trapping environments was performed. This study also demonstrates the technique using spatial light modulation in patterned manipulation of live cell arrays over a broad area.

  19. Synthesis, Characterization, and Biological Evaluation of Some New Functionalized Terphenyl Derivatives

    Directory of Open Access Journals (Sweden)

    Seranthimata Samshuddin

    2012-01-01

    Full Text Available New functionalized terphenyl derivatives incorporating various heterocyclic rings are prepared by using 4,4′′-difluoro-5′-hydroxy-1,1′:3′,1′′-terphenyl-4′-carbohydrazide as a key intermediate derived from 4,4′-difluoro chalcone, a versatile synthone. All the derivatives are characterized by 1H NMR, IR, and mass spectral data. All the synthesized products are screened for their in vitro antimicrobial and antioxidant properties. The majority of the tested compounds exhibited significant antioxidant activity and some of them showed good antimicrobial activity.

  20. Molecular identification and biological characterization of a new potyvirus in lettuce.

    Science.gov (United States)

    Ciuffo, Marina; Mammella, Marco; Vallino, Marta; Caciagli, Piero; Turina, Massimo

    2016-09-01

    A potyvirus causing necrosis and leaf distortion on lettuce was found in the Lazio region of Italy. Host range analysis showed its ability to infect only Chenopodium quinoa and C. amaranticolor in addition to some lettuce cultivars. The virus could be transmitted by aphids of the species Myzus persicae. The complete 9829-nt genome was characterized. BLAST analysis of sequence of the complete encoded polyprotein showed that the most closely related virus is asparagus virus 1, with 52 % amino acid sequence identity. These results suggest that this virus should be considered a member of a new species in the genus Potyvirus. PMID:27287434

  1. Determination of Cu(2+), Zn(2+) and Pb(2+) in biological and food samples by FAAS after preconcentration with hydroxyapatite nanorods originated from eggshell.

    Science.gov (United States)

    Mortada, Wael I; Kenawy, Ibrahim M M; Abdelghany, Amr M; Ismail, Amani M; Donia, Ahmed F; Nabieh, Kareem A

    2015-01-01

    Hydroxyapatite nanorods (HAPNRs) were prepared from recycled eggshell by using precipitation method. The structure of the HAPNRs was physicochemically and morphologically characterized by X-ray diffraction, transmission electron microscopy and Fourier transform infrared spectroscopy. The resulting HAPNRs were used for solid phase extractive preconcentration of Cu(2+), Zn(2+) and Pb(2+) prior to its determination by flame atomic absorption spectrometry. Experimental variables that influence the quantitative extraction of metal ions were optimized by both batch and column methods. The analytes were quantitatively sorbed on the matrix between pHs6 and 9. The maximum sorption capacity of the HAPNRs has been found to be 2.43, 2.37 and 2.53 mmol g(-1) for Cu(2+), Zn(2+) and Pb(2+), respectively, with the preconcentration factor of 250. The 3σ detection limit and 10σ quantification limit for Cu(2+), Zn(2+) and Pb(2+) were found to be 0.72, 0.55 and 5.12 μg L(-1) and 2.40, 1.83 and 17.06 μg L(-1), respectively. The calibration curves were linear up to 250 μg L(-1) for Cu(2+), 300 μg L(-1) for Zn(2+) and 400 μg L(-1) for Pb(2+). Accuracy of the proposed method was verified using certified reference materials (NCS ZC85006 Tomato, Seronorm Trace Elements Whole Blood L-1, Seronorm Trace Elements Whole Blood L-3 and Seronorm Trace Elements Urine). The present method was successfully applied to the analysis of these metal ions in sea water, biological and food samples. PMID:25953570

  2. Synthesis, characterization and biological studies of 1,7- dinaphthyl heptanoids and their metal chelates

    Directory of Open Access Journals (Sweden)

    S. Sindhu

    2015-06-01

    Full Text Available The present investigation includes the synthesis, characterization, antitumour and antimicrobial activities of three new curcuminoid analogues and their metal chelates. Curcuminoid analogues and their metal chelates have great ability to act as antitumour and antimicrobial agents which motivated us and lead to this present work. The new curcuminoid analogues namely 1,7-di(1-naphthyl-1,6-heptadiene-3,5-dione (1a, 1,7-di(2-methoxy 1-naphthyl-1,6-heptadiene-3,5-dione (1b, 1,7-di(2-hydroxy 1-naphthyl-1,6 -heptadiene-3,5-dione and their Cu(II and Al(III complexes were synthesized and characterized using UV, IR,1HNMR and Mass spectral data. The curcuminoid analogues and their metal complexes were studied for their cytotoxicity and antibacterial ability using Trypan blue exclusion method and agar well diffusion method respectively. The present study suggests that the Cu(II complexs showed remarkable enhancement of cytotoxic activity where as the Al(III complexs were found to be most active towards antimicrobial activity.

  3. Preparation, characterization, biological activity, and transport study of polystyrene based calcium–barium phosphate composite membrane

    International Nuclear Information System (INIS)

    Calcium–barium phosphate (CBP) composite membrane with 25% polystyrene was prepared by co-precipitation method. Scanning electron microscopy (SEM), X-ray diffraction (XRD), Fourier transformed infrared (FTIR), and Thermogravimetric analysis (TGA) were used to characterize the membrane. The membrane was found to be crystalline in nature with consistent arrangement of particles and no indication of visible cracks. The electrical potentials measured across the composite membrane in contact with univalent electrolytes (KCl, NaCl and LiCl), have been found to increase with decrease in concentrations. Thus the membrane was found to be cation-selective. Transport properties of developed membranes may be utilized for the efficient desalination of saline water and more importantly demineralization process. The antibacterial study of this composite membrane shows good results for killing the disease causing bacteria along with waste water treatment. Highlights: • Transport properties of composite membrane are evaluated. • The composite membrane was found to be stable in all media. • TMS method is used for electrochemical characterization. • The membrane was found to be cation selective. • The order of surface charge density was found to be LiCl < NaCl < KCl

  4. Design, spectral characterization and biological studies of transition metal(II) complexes with triazole Schiff bases

    Science.gov (United States)

    Hanif, Muhammad; Chohan, Zahid H.

    2013-03-01

    A new series of three biologically active triazole derived Schiff base ligands L1-L3 have been synthesized in equimolar reaction of 3-amino-1H-1,2,4-triazole with pyrrol-2-carboxaldehyde, 4-bromo-thiophene-2-carboxaldehyde, and 5-iodo-2-hydroxy benzaldehyde. The prepared Schiff bases were used for further complex formation reaction with different metal elements like Co(II), Ni(II), Cu(II) and Zn(II) as chlorides by using a molar ratio of ligand:metal as 2:1. The structure and bonding nature of all the compounds were identified by their physical, spectral and analytical data. All the metal(II) complexes possessed an octahedral geometry except the Cu(II) complexes which showed a distorted octahedral geometry. All the synthesized compounds, were studied for their in vitro antibacterial, and antifungal activities, against four Gram-negative (Escherichia coli, Shigella sonnei, Pseudomonas aeruginosa and Salmonella typhi) and two Gram-positive (Bacillus subtilis and Staphylococcus aureus) bacterial strains and against six fungal strains (Trichophyton longifusus, Candida albicans, Aspergillus flavus, Microsporum canis, Fusarium solani and Candida glabrata) by using agar-well diffusion method. It has been shown that all the synthesized compounds showed moderate to significant antibacterial activity against one or more bacterial strains. In vitro Brine Shrimp bioassay was also carried out to investigate the cytotoxic properties of these compounds. The data also revealed that the metal complexes showed better activity than the ligands due to chelation/coordination.

  5. Synthesis, Spectroscopic Characterization and Biological Activities of Transition Metal Complexes Derived from a Tridentate Schiff Base

    Directory of Open Access Journals (Sweden)

    J. Senthil Kumaran

    2013-01-01

    Full Text Available A new series of Cu (II, Ni (II, Co (II and Zn (II complexes have been synthesized from the Schiff base derived from 4-hydroxy-3-methoxybenzylidine-4-aminoantipyrine and 2-aminophenol. The structural features have been determined from their elemental analysis, magnetic susceptibility, molar conductance, Mass, IR, UV-Vis, 1H-NMR, 13C-NMR and ESR spectral studies. The redox behavior of the copper complex has been studied by cyclic voltammetry. The data confirm that the complexes have composition of ML2 type. The electronic absorption spectral data of the complexes propose an octahedral geometry around the central metal ion. All the metal complexes with DNA structure were guided by the presence of inter-molecular C–H⋯O and C–H⋯N hydrogen bonds. The biological activity of the synthesized compounds were tested against the bacterial species such as Bacillus subtilis, Staphylococcus aureus, Proteus vulgaris and fungal species such as Candida albicans by the well-diffusion method.

  6. Characterization of biofilm of a rotating biological contactor treating synthetic wastewater.

    Science.gov (United States)

    Singh, V; Mittal, A K

    2012-01-01

    A four-stage rotating biological contactor (RBC) was designed and operated to treat synthetic wastewater containing 1,000 mg/l chemical oxygen demand (COD) and 112 mg/l NH(4)(+)-N. A mixed culture bacterial biofilm was developed consisting of a heterotrophic bacterium Paracoccus pantotrophus, nitrifiers and other heterotrophs. Applying the peculiar characteristics of P. pantotrophus of simultaneous heterotrophic nitrification and aerobic denitrification, high simultaneous removal of carbon and nitrogen could be achieved in the fully aerobic RBC. The microbial community structure of the RBC biofilm was categorized based on the nitrate reduction, biochemical reactions, gram staining and morphology. The presence of P. pantotrophus within the RBC biofilm was confirmed with an array of biochemical tests. Isolates from the four stages of RBC were grouped into complete denitrifiers, incomplete denitrifiers and non-denitrifiers. This categorization showed a higher relative abundance of P. pantotrophus in the first stage as compared with subsequent stages, in which other nitrifiers and heterotrophs were significantly present. High total nitrogen removal of upto 68% was in conformity with observations made using microbial categorization and biochemical tests. The high relative abundance of P. pantotrophus in the biofilm revealed that it could successfully compete with other heterotrophs and autotrophic nitrifiers in mixed bacterial biomass. PMID:22699350

  7. Isolation, Characterization and Biological Properties of Membrane Vesicles Produced by the Swine Pathogen Streptococcus suis.

    Directory of Open Access Journals (Sweden)

    Bruno Haas

    Full Text Available Streptococcus suis, more particularly serotype 2, is a major swine pathogen and an emerging zoonotic agent worldwide that mainly causes meningitis, septicemia, endocarditis, and pneumonia. Although several potential virulence factors produced by S. suis have been identified in the last decade, the pathogenesis of S. suis infections is still not fully understood. In the present study, we showed that S. suis produces membrane vesicles (MVs that range in diameter from 13 to 130 nm and that appear to be coated by capsular material. A proteomic analysis of the MVs revealed that they contain 46 proteins, 9 of which are considered as proven or suspected virulence factors. Biological assays confirmed that S. suis MVs possess active subtilisin-like protease (SspA and DNase (SsnA. S. suis MVs degraded neutrophil extracellular traps, a property that may contribute to the ability of the bacterium to escape the host defense response. MVs also activated the nuclear factor-kappa B (NF-κB signaling pathway in both monocytes and macrophages, inducing the secretion of pro-inflammatory cytokines, which may in turn contribute to increase the permeability of the blood brain barrier. The present study brought evidence that S. suis MVs may play a role as a virulence factor in the pathogenesis of S. suis infections, and given their composition be an excellent candidate for vaccine development.

  8. Characterization and biological activities of recombinant human plasminogen kringle 1-3 produced in Escherichia coli.

    Science.gov (United States)

    You, Weon-Kyoo; So, Seung-Ho; Sohn, Young-Doug; Lee, Hyosil; Park, Doo-Hong; Chung, Soo-Il; Chung, Kwang-Hoe

    2004-07-01

    Angiogenesis, the formation of new capillaries from preexisting blood vessels, is involved in many pathological conditions, for example, tumorigenesis, diabetic retinopathy, and rheumatoid arthritis. Angiostatin, which contains the kringle 1-4 domains of plasminogen, is known to be a potent inhibitor of angiogenesis and a strong suppressor of various solid tumors. In this study, we expressed recombinant protein containing the kringle 1-3 domains of human plasminogen in Escherichia coli and investigated its biological activities. The protein was successfully refolded from inclusion bodies and purified at a 30% overall yield, as a single peak by HPLC. The purified recombinant protein had biochemical properties that were similar to those of the native form, which included molecular size, lysine-binding capacity, and immunoreactivity with a specific antibody. The recombinant protein was also found to strongly inhibit the proliferation of bovine capillary endothelial cells in vitro, and the formation of new capillaries on chick embryos. In addition, it suppressed the growth of primary Lewis lung carcinoma and B16 melanoma in an in vivo mouse model. Our findings suggest that the recombinant kringle 1-3 domains in a prokaryote expression system have anti-angiogenic activities, which may be useful in clinical and basic research in the field of angiogenesis. PMID:15177278

  9. Development and characterization of a radioimmunoassay to measure human tissue kallikrein in biological fluids

    International Nuclear Information System (INIS)

    A direct radioimmunoassay has been developed to measure tissue kallikrein in human biological fluids, including serum, plasma, urine, pancreatic juice and saliva. Purified kallikreins from human urine and human saliva were used to raise rabbit antibody and each labelled with Na125I for use in the radioimmunoassay. Comparison of the different antigen-antibody systems was then made. Bound and free enzyme were separated by a double-antibody technique. The usable range of the standard curve was from 2.5 to 100 μg kallikrein/1. The intra-assay coefficient of variation was 4.7%, the interassay coefficient of variation 8.9% and the recoveries of purified kallikrein added to the samples were 99.3, 96.0, 110.8 and 81.2% for urine, saliva, serum and plasma respectively. Parallel dilution curves were obtained for serum and plasma, as well as urine, saliva and pancreatic juice. Plasma anticoagulated with EDTA or heparin gave consistently lower values than serum, when measured in the radioimmunoassay. From eight different subjects plasma (EDTA) values were on average 50% lower than those of serum, and subsequent experiments revealed that treatment of blood with some anticoagulants, in particular heparin and EDTA, resulted in a marked reduction in measurable tissue kallikrein. (author)

  10. Performance and characterization of a newly developed self-agitated anaerobic reactor with biological desulfurization.

    Science.gov (United States)

    Kobayashi, Takuro; Li, Yu-You

    2011-05-01

    The continuous operation of a newly developed methane fermentation reactor, which requires no electricity for the agitation of the fermentation liquid was investigated, and the extent of the biological desulfurization was monitored. Inside the reactor, the continual change in the liquid level and the self-agitation, occurring between 5 and 16 times every day, distributed the organic load near the inlet port of the reactor, as well as providing a nutrient supply to the hydrogen sulfide oxidizing bacteria. At different COD(Cr) loading rates (5, 7, 10 kg m(3)d(-1)), the reactor achieved a biogas production yield of 0.72-0.82 m(3)g(-1)-TS, a COD(Cr) reduction of 79.4-85.5% and an average of 99% hydrogen sulfide removal. This investigation demonstrated that the self-agitated reactor is comparable in digestion performance to the completely stirred tank reactor (CSTR) investigated in a previous study, and that the desulfurization performance was significantly enhanced compared to the CSTR. PMID:21398119

  11. Synthesis, characterization and biological evaluation of strontium/magnesium-co-substituted hydroxyapatite.

    Science.gov (United States)

    Geng, Zhen; Wang, Renfeng; Li, Zhaoyang; Cui, Zhenduo; Zhu, Shengli; Liang, Yanqin; Liu, Yunde; Huijing, Bao; Li, Xue; Huo, Qianyu; Liu, Zhili; Yang, Xianjin

    2016-07-01

    The present study aims to investigate the contribution of two biologically important cations, Mg(2+) and Sr(2+), when co-substituted into the structure of hydroxyapatite (Ca10(PO4)6(OH)2, HA). The substituted samples were synthesized by a hydrothermal method that involved the addition of Mg(2+) and Sr(2+) containing precursors to partially replace Ca(2+) in the apatite structure. Four co-substituted HA samples with different concentrations of Mg(2+) and Sr(2+) ((Mg + Sr)/(Mg + Sr + Ca) = 30%) were investigated, and they were compared with pure HA. Experimental results showed that only a limited amount of Mg (Mg/(Mg + Ca + Sr) < 14%) could successfully substitute for Ca in HA. In addition, Mg substitution resulted in reduced crystallinity, thermal stability and lattice parameters of HA. In contrast, Sr could fully substitute for Ca. Furthermore, the addition of Sr increased the lattice parameters of HA. Here, we obtained the cation leach liquor by immersing the prepared samples in a culture medium for cell experiments. The in vitro study showed that 10Mg20Sr promoted better MG63 cell attachment, proliferation and differentiation than HA. Thus, the presence of an appropriate proportion of Mg and Sr could play a significant role in the increased biocompatibility of HA. PMID:26916949

  12. Isolation, characterization, and identification of biological control agent for potato soft rot in Bangladesh.

    Science.gov (United States)

    Rahman, M M; Ali, M E; Khan, A A; Akanda, A M; Uddin, Md Kamal; Hashim, U; Abd Hamid, S B

    2012-01-01

    A total of 91 isolates of probable antagonistic bacteria of potato soft rot bacterium Erwinia carotovora subsp. carotovora (Ecc) were extracted from rhizospheres and endophytes of various crop plants, different soil varieties, and atmospheres in the potato farming areas of Bangladesh. Antibacterial activity of the isolated probable antagonistic bacteria was tested in vitro against the previously identified most common and most virulent soft rot causing bacterial strain Ecc P-138. Only two isolates E-45 and E-65 significantly inhibited the in vitro growth of Ecc P-138. Physiological, biochemical, and carbon source utilization tests identified isolate E-65 as a member of the genus Bacillus and the isolate E-45 as Lactobacillus sp. The stronger antagonistic activity against Ecc P-138 was found in E-65 in vitro screening and storage potatoes. E-65 reduced the soft rot infection to 22-week storage potatoes of different varieties by 32.5-62.5% in model experiment, demonstrating its strong potential to be used as an effective biological control agent for the major pectolytic bacteria Ecc. The highest (62.5%) antagonistic effect of E-65 was observed in the Granola and the lowest (32.7%) of that was found in the Cardinal varieties of the Bangladeshi potatoes. The findings suggest that isolate E-65 could be exploited as a biocontrol agent for potato tubers. PMID:22645446

  13. Fabrication, characterization, and biological assessment of multilayer laminin γ2 DNA coatings on titanium surfaces

    Science.gov (United States)

    Yang, Guoli; Zhang, Jing; Dong, Wenjing; Liu, Li; Shi, Jue; Wang, Huiming

    2016-03-01

    The purpose of this work was to fabricate a multilayer laminin γ2 DNA coating on a titanium surface and evaluate its biological properties. A multilayer laminin γ2 DNA coating was fabricated on titanium using a layer-by-layer assembly technique. The rate of coating degradation was evaluated by detecting the amount of cDNA remaining. Surface analysis using X-ray photoelectron spectroscopy, atomic force microscopy, and surface contact angle measurements revealed the multilayer structure to consist of cationic lipid and confirmed that a laminin γ2 DNA layer could be fabricated on titanium via the layer-by-layer assembly process. The transfection efficiency was highest for five layers in the multilayer structure. HEK293 cells cultured on the multilayer films displayed significantly higher adhesion activity than the control group. The expression of laminin γ2 and the co-localization of integrin β4 and plectin were more obvious in HN4 cells cultured on the multilayer laminin γ2 DNA coating, while weak immunoreactivities were observed in the control group. We concluded that the DNA-loaded multilayer provided a surface with good biocompatibility and that the multilayer laminin γ2 DNA coating might be effective in improving cell adhesion and the formation of hemidesmosomes on titanium surfaces.

  14. Characterization of Radiation Fields in Biological Shields of Nuclear Power Plants for Assessing Concrete Degradation

    Science.gov (United States)

    Remec, Igor; Rosseel, Thomas M.; Field, Kevin G.; Le Pape, Yann

    2016-02-01

    Life extensions of nuclear power plants to 60 and potentially 80 years of operation have renewed interest in long-term material degradation. One material being considered is concrete, with a particular focus on radiation-induced effects. Based on the projected neutron fluence values (E > 0.1 MeV) in the concrete biological shields of the US pressurized water reactor fleet and the available data on radiation effects on concrete, some decrease in mechanical properties of concrete cannot be ruled out during extended operation beyond 60 years. An expansion of the irradiated concrete database and a reliable determination of relevant neutron fluence energy cutoff value are necessary to ensure reliable risk assessment for extended operation of nuclear power plants. Notice: This manuscript has been authored by UT-Battelle, LLC, under contract DE-AC0500OR22725 with the US Department of Energy. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a nonexclusive, paid-up, irrevocable, worldwide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes.

  15. Biological Properties and Characterization of ASL50 Protein from Aged Allium sativum Bulbs.

    Science.gov (United States)

    Kumar, Suresh; Jitendra, Kumar; Singh, Kusum; Kapoor, Vaishali; Sinha, Mou; Xess, Immaculata; Das, Satya N; Sharma, Sujata; Singh, Tej P; Dey, Sharmistha

    2015-08-01

    Allium sativum is well known for its medicinal properties. The A. sativum lectin 50 (ASL50, 50 kDa) was isolated from aged A. sativum bulbs and purified by gel filtration chromatography on Sephacryl S-200 column. Agar well diffusion assay were used to evaluate the antimicrobial activity of ASL50 against Candida species and bacteria then minimal inhibitory concentration (MIC) was determined. The lipid A binding to ASL50 was determined by surface plasmon resonance (SPR) technology with varying concentrations. Electron microscopic studies were done to see the mode of action of ASL50 on microbes. It exerted antimicrobial activity against clinical Candida isolates with a MIC of 10-40 μg/ml and clinical Pseudomonas aeruginosa isolates with a MIC of 10-80 μg/ml. The electron microscopic study illustrates that it disrupts the cell membrane of the bacteria and cell wall of fungi. It exhibited antiproliferative activity on oral carcinoma KB cells with an IC50 of 36 μg/ml after treatment for 48 h and induces the apoptosis of cancer cells by inducing 2.5-fold higher caspase enzyme activity than untreated cells. However, it has no cytotoxic effects towards HEK 293 cells as well as human erythrocytes even at higher concentration of ASL50. Biological properties of ASL50 may have its therapeutic significance in aiding infection and cancer treatments. PMID:26043852

  16. Synthesis, characterization and biological properties of thienyl derived triazole Schiff bases and their oxovanadium(IV) complexes.

    Science.gov (United States)

    Chohan, Zahid H; Sumrra, Sajjad H

    2012-04-01

    A new series of biologically active thienyl derived triazole Schiff bases and their oxovanadium(IV) complexes have been synthesized and characterized on the basis of physical (m.p., magnetic susceptibility and conductivity), spectral (IR, ¹H and ¹³C NMR, electronic and mass spectrometry) and microanalytical data. All the Schiff base ligands and their oxovanadium(IV) complexes have been subjected to in vitro antibacterial activity against four Gram-negative (Escherichia coli, Shigella flexneri, Pseudomonas aeruginosa, Salmonella enterica serover typhi) and two Gram-positive (Staphylococcus aureus and Bacillus subtilis) bacterial strains and, for in vitro antifungal activity against Trichophyton longifucus, Candida albican, Aspergillus flavus, Microscopum canis, Fusarium solani and Candida glabrata. Brine shrimp bioassay was also carried out to check the cytotoxic nature of these compounds. PMID:21635212

  17. Biophysical characterization data on Aβ soluble oligomers produced through a method enabling prolonged oligomer stability and biological buffer conditions

    Directory of Open Access Journals (Sweden)

    Amanda C. Crisostomo

    2015-09-01

    Aβ1-40 soluble oligomers are produced that are suitable for biophysical studies requiring sufficient transient stability to exist in their “native” conformation in biological phosphate-saline buffers for extended periods of time. The production involves an initial preparation of highly monomeric Aβ in a phosphate saline buffer that transitions to fibrils and oligomers through time incubation alone, without added detergents or non-aqueous chemicals. This criteria ensures that the only difference between initial monomeric Aβ reactant and subsequent Aβ oligomer products is their degree of peptide assembly. A number of chemical and biophysical methods were used to characterize the monomeric reactants and soluble oligomer and amyloid fibril products, including chemical cross-linking, Western blots, fraction solubility, thioflvain T binding, size exclusion chromatography, transmission electron micrscopy, circular dichroism spectroscopy, and fluorescence resonance energy transfer.

  18. Real-time detection and characterization of individual flowing airborne biological particles: fluorescence spectra and elastic scattering measurements

    Science.gov (United States)

    Pan, Yongle; Holler, Stephen; Chang, Richard K.; Hill, Steven C.; Pinnick, Ronald G.; Niles, Stanley; Bottiger, Jerold R.; Bronk, Burt V.

    1999-11-01

    Real-time methods which is reagentless and could detect and partially characterize bioaerosols are of current interest. We present a technique for real-time measurement of UV-excited fluorescence spectra and two-dimensional angular optical scattering (TAOS) from individual flowing biological aerosol particles. The fluorescence spectra have been observed from more than 20 samples including Bacillus subtilis, Escherichia coli, Erwinia herbicola, allergens, dust, and smoke. The S/N and resolution of the spectra are sufficient for observing small lineshape differences among the same type of bioaerosol prepared under different conditions. The additional information from TAOS regarding particle size, shape, and granularity has the potential of aiding in distinguishing bacterial aerosols from other aerosols, such as diesel and cigarette smoke.

  19. Theoretical and Computational Studies of Condensed-Phase Phenomena: The Origin of Biological Homochirality, and the Liquid-Liquid Phase Transition in Network-Forming Fluids

    Science.gov (United States)

    Ricci, Francesco

    This dissertation describes theoretical and computational studies of the origin of biological homochirality, and the existence of a liquid-liquid phase transition in pure-component network-forming fluids. A common theme throughout these studies is the use of sophisticated computer simulation and statistical mechanics techniques to study complex condensed-phase phenomena. In the first part of this dissertation, we use an elementary lattice model with molecular degrees of freedom, and satisfying microscopic reversibility, to investigate the effect of reaction reversibility on the evolution of stochastic symmetry breaking via autocatalysis and mutual inhibition in a closed system. We identify conditions under which the system's evolution towards racemic equilibrium becomes extremely slow, allowing for long-time persistence of a symmetry-broken state. We also identify a "monomer purification" mechanism, due to which a nearly homochiral state can persist for long times, even in the presence of significant reverse reaction rates. Order of magnitude estimates show that with reasonable physical parameters a symmetry broken state could persist over geologically-relevant time scales. In the second part of this dissertation, we study a chiral-symmetry breaking mechanism known as Viedma ripening. We develop a Monte Carlo model to gain further insights into the mechanisms capable of reproducing key experimental signatures associated with this phenomenon. We also provide a comprehensive investigation of how the model parameters impact the system's overall behavior. It is shown that size-dependent crystal solubility alone is insufficient to reproduce most experimental signatures, and that some form of a solid-phase chiral feedback mechanism (e.g., agglomeration) must be invoked in our model. In the third part of this dissertation, we perform rigorous free energy calculations to investigate the possibility of a liquid-liquid phase transition (LLPT) in the Stillinger-Weber (SW

  20. Molecular and biological characterization of corchorus mottle virus, a new begomovirus from Brazil.

    Science.gov (United States)

    Blawid, Rosana; Fontenele, Rafaela S; Lacorte, Cristiano; Ribeiro, Simone G

    2013-12-01

    A begomovirus infecting Orinoco jute (Corchorus hirtus) from Brazil was characterized. Molecular analysis revealed a bipartite genomic organization, which is typical of the New World begomoviruses. Sequence analysis and phylogenetic data showed that both genomic components have the closest relationship with abutilon mosaic Brazil virus, with an identity of 87.3 % for DNA-A, indicating that this virus is a member of a new begomovirus species for which the name "Corchorus mottle virus" (CoMoV) is proposed. Sida rhombifolia plants inoculated by biolistics with an infectious clone of CoMoV showed systemic vein chlorosis, mottling and leaf deformation symptoms, while Nicotiana benthamiana and tomato plants had symptomless infection. CoMoV is the first corchorus-infecting begomovirus reported in Brazil. PMID:23812656

  1. Synthesis, physical characterization and biological evaluation of Schiff base M(II complexes

    Directory of Open Access Journals (Sweden)

    Mahasin Alias

    2014-04-01

    Full Text Available Metal (II complexes of Cu, Ni, and Co with Schiff base derived from potassium 2-N (4-N,N-dimethylaminobenzyliden- 4-trithiocarbonate 1,3,4-thiadiazole (L were synthesized and characterized by standard physico-chemical procedures i.e. (metal analysis A.A, elemental chemical analysis C.H.N.S, FTIR, UV–vis, thermal analysis TGA, magnetic susceptibility and conductometric measurements. On the basis of these studies, a six coordinated octahedral geometry for all these complexes has been proposed. The Schiff base ligand and its complexes were also tested for their antibacterial activity to assess their inhibiting potential against Pseudomonas aeruginosa (as gram negative bacteria and Staphylococcus aureus (as gram positive bacteria using two different concentrations (5 and 10 mM. The results showed the Ni(II complex have the higher rate in antibacterial activity than other complexes and ligand when compared them with ampicillin as standard drug.

  2. Synthesis, Characterization, and Agricultural Biological Activities of 5-Fluoro-2-hydroxy Butyrophenone

    Directory of Open Access Journals (Sweden)

    Fengli Xin

    2013-01-01

    Full Text Available A novel synthetic approach towards 5-fluoro-2-hydroxy butyrophenone is reported. Using 4-fluorophenol as a raw material, the processes of etherification protection, Friedel-Crafts acylation and demethylation provide the target compound under mild conditions. The structure was characterized by the melting point and IR, MS, 1H-NMR, and 13C-NMR spectroscopy. The bioassay results indicate that the target compound exhibits potent antifungal activities against Valsa mali, Coniella dipodiella, and other agricultural plant fungi. The target compound also shows potent herbicidal activities for Lactuca sativa, a dicotyledon, and Echinochloa crus-galli, a monocotyledon. The toxicity regression C50 values of the compound against Valsa mali, Coniothyrium diplodiella, Lactuca sativa seedling, and Echinochloa crusgalli seedling were calculated by SPSS. The Hormesis effect for roots of Echinochloa crusgalli was confirmed.

  3. Squaraines bearing halogenated moieties as anticancer photosensitizers: Synthesis, characterization and biological evaluation.

    Science.gov (United States)

    Serpe, Loredana; Ellena, Silvano; Barbero, Nadia; Foglietta, Federica; Prandini, Federica; Gallo, Maria Pia; Levi, Renzo; Barolo, Claudia; Canaparo, Roberto; Visentin, Sonja

    2016-05-01

    We report the synthesis and characterization of a series of symmetrical indolenine-based squaraine dyes along with the evaluation of their singlet oxygen generation efficiency. The photodynamic activity of these new photosensitizers has been evaluated on a human tumor fibrosarcoma (HT-1080) cell line. The cytotoxicity increased over time and is induced by the photoactivation of bromo (Br-C4) and iodio (I-C4) long carbon chain squaraine dyes and the consequent increase in reactive oxygen species (ROS) production (p < 0.001), which leads to necrosis 6 h after treatment. Induction of cytochrome c release, DNA damage and up-regulation of GPX1, NQO1 and SOD2 mRNA gene expression after PDT were investigated. PMID:26942626

  4. Copper-containing polyvinyl alcohol composite systems: Preparation, characterization and biological activity

    Science.gov (United States)

    Reza Hajipour, Abdol; Mohammadsaleh, Fatemeh; Reza Sabzalian, Mohammad

    2015-08-01

    The present investigation reports, the complex formation of Cu(II) with polyvinyl alcohol (PVA) and the synthesis of PVA-stabilized Cu2O particles. This PVA-Cu2O composite has been prepared via chemical reduction method using PVA-Cu(II) complex as precursor. At first, Cu(II) ions were stabilized in PVA matrix via complex formation with OH groups; subsequently, this PVA-Cu(II) macromolecular complex as precursor reacted with ascorbic acid as reducing agent at pH=12 to prepare PVA-Cu2O composite. The products were characterized by FTIR, XRD, FE-SEM, HRTEM, Visible Spectroscopy and atomic absorption. In the following, the antibacterial properties of as-prepared composites were examined against Gram-positive (Bacillus thuringiensis) and Gram-negative bacteria (Escherichia coli), and the results showed excellent antibacterial activity of these materials.

  5. Physicochemical and biological characterization of nanocomposites made of segmented polyurethanes and Cloisite 30B.

    Science.gov (United States)

    Moo-Espinosa, J I; Solís-Correa, R; Vargas-Coronado, R; Cervantes-Uc, J M; Cauich-Rodríguez, J V; Owen, P Quintana; Aguilar-Santamaría, M A; Gutiérrez, Mar Fernández; del Barrio, J San Román

    2013-07-01

    Nanocomposites were prepared with segmented polyurethanes and Cloisite 30B by either solution mixing or in situ polymerization and characterized by Fourier transform infrared spectroscopy, differential scanning calorimetry, thermogravimetric analysis and X-ray diffraction. Cytotoxicity and genotoxicity were assessed with lymphocytes while cell viability was measured by the methyl tetrazolium assay using fibroblasts. It was found that in situ polymerization rendered exfoliated nanocomposites with higher glass transition temperature, tensile modulus and thermal stability compared to nanocomposites obtained by solution mixing. The mitotic index of lymphocytes was significantly reduced at high clay concentrations (6 wt% and 10 wt%), while fibroblast viability improved in the presence of extract obtained after days 2 and 7. PMID:23812945

  6. Palladium polypyridyl complexes: synthesis, characterization, DNA interaction and biological activity on Leishmania (L.) mexicana

    Energy Technology Data Exchange (ETDEWEB)

    Navarro, Maribel [Instituto Venezolano de Investigaciones Cientificas, Caracas (Venezuela). Centro de Quimica; Betancourt, Adelmo [Universidad de Carabobo, Valencia (Venezuela). Facultad Experimental de Ciencia y Tecnologia. Dept. de Quimica; Hernandez, Clara [Universidad de Carabobo Sede Aragua, Maracay (Venezuela). Facultad de Ciencias de la Salud. Dept. de Ciencias Basicas; Marchan, Edgar [Universidad de Oriente, Cumana (Venezuela). Inst. de Investigaciones en Biomedicina y Ciencias Aplicadas. Nucleo de Sucre

    2008-07-01

    This paper describes the search for new potential chemotherapeutic agents based on transition metal complexes with planar ligands. In this study, palladium polypyridyl complexes were synthesized and characterized by elemental analysis, NMR, UV-VIS and IR spectroscopies. The interaction of the complexes with DNA was also investigated by spectroscopic methods. All metal-to-ligand charge transfer (MLCT) bands of the palladium polypyridyl complexes exhibited hypochromism and red shift in the presence of DNA. The binding constant and viscosity data suggested that the complexes [PdCl{sub 2}(phen)] and [PdCl{sub 2}(phendiamine)] interact with DNA by electrostatic forces. Additionally, these complexes induced an important leishmanistatic effect on L. (L.) mexicana promastigotes at the final concentration of 10 {mu}mol L{sup -1} in 48 h. (author)

  7. Palladium polypyridyl complexes: synthesis, characterization, DNA interaction and biological activity on Leishmania (L.) mexicana

    International Nuclear Information System (INIS)

    This paper describes the search for new potential chemotherapeutic agents based on transition metal complexes with planar ligands. In this study, palladium polypyridyl complexes were synthesized and characterized by elemental analysis, NMR, UV-VIS and IR spectroscopies. The interaction of the complexes with DNA was also investigated by spectroscopic methods. All metal-to-ligand charge transfer (MLCT) bands of the palladium polypyridyl complexes exhibited hypochromism and red shift in the presence of DNA. The binding constant and viscosity data suggested that the complexes [PdCl2(phen)] and [PdCl2(phendiamine)] interact with DNA by electrostatic forces. Additionally, these complexes induced an important leishmanistatic effect on L. (L.) mexicana promastigotes at the final concentration of 10 μmol L-1 in 48 h. (author)

  8. Bacterial Exopolysaccharides from Extreme Marine Habitats: Production, Characterization and Biological Activities

    Directory of Open Access Journals (Sweden)

    Annarita Poli

    2010-06-01

    Full Text Available Many marine bacteria produce exopolysaccharides (EPS as a strategy for growth, adhering to solid surfaces, and to survive adverse conditions. There is growing interest in isolating new EPS producing bacteria from marine environments, particularly from extreme marine environments such as deep-sea hydrothermal vents characterized by high pressure and temperature and heavy metal presence. Marine EPS-producing microorganisms have been also isolated from several extreme niches such as the cold marine environments typically of Arctic and Antarctic sea ice, characterized by low temperature and low nutrient concentration, and the hypersaline marine environment found in a wide variety of aquatic and terrestrial ecosystems such as salt lakes and salterns. Most of their EPSs are heteropolysaccharides containing three or four different monosaccharides arranged in groups of 10 or less to form the repeating units. These polymers are often linear with an average molecular weight ranging from 1 × 105 to 3 × 105 Da. Some EPS are neutral macromolecules, but the majority of them are polyanionic for the presence of uronic acids or ketal-linked pyruvate or inorganic residues such as phosphate or sulfate. EPSs, forming a layer surrounding the cell, provide an effective protection against high or low temperature and salinity, or against possible predators. By examining their structure and chemical-physical characteristics it is possible to gain insight into their commercial application, and they are employed in several industries. Indeed EPSs produced by microorganisms from extreme habitats show biotechnological promise ranging from pharmaceutical industries, for their immunomodulatory and antiviral effects, bone regeneration and cicatrizing capacity, to food-processing industries for their peculiar gelling and thickening properties. Moreover, some EPSs are employed as biosurfactants and in detoxification mechanisms of petrochemical oil-polluted areas. The aim of

  9. Silver, gold, and alloyed silver-gold nanoparticles: characterization and comparative cell-biologic action

    Energy Technology Data Exchange (ETDEWEB)

    Mahl, Dirk; Diendorf, Joerg; Ristig, Simon [University of Duisburg-Essen, Department of Inorganic Chemistry, Center for Nanointegration Duisburg-Essen (CeNIDE) (Germany); Greulich, Christina [Ruhr-University of Bochum, Bergmannsheil University Hospital/Surgical Research (Germany); Li Zian; Farle, Michael [University of Duisburg-Essen, Faculty of Physics, Center for Nanointegration Duisburg-Essen (CeNIDE) (Germany); Koeller, Manfred [Ruhr-University of Bochum, Bergmannsheil University Hospital/Surgical Research (Germany); Epple, Matthias, E-mail: matthias.epple@uni-due.de [University of Duisburg-Essen, Department of Inorganic Chemistry, Center for Nanointegration Duisburg-Essen (CeNIDE) (Germany)

    2012-10-15

    Silver, gold, and silver-gold-alloy nanoparticles were prepared by citrate reduction modified by the addition of tannin during the synthesis, leading to a reduction in particle size by a factor of three. Nanoparticles can be prepared by this easy water-based synthesis and subsequently functionalized by the addition of either tris(3-sulfonatophenyl)phosphine or poly(N-vinylpyrrolidone). The resulting nanoparticles of silver (diameter 15-25 nm), gold (5-6 nm), and silver-gold (50:50; 10-12 nm) were easily dispersable in water and also in cell culture media (RPMI + 10 % fetal calf serum), as shown by nanoparticle tracking analysis and differential centrifugal sedimentation. High-resolution transmission electron microscopy showed a polycrystalline nature of all nanoparticles. EDX on single silver-gold nanoparticles indicated that the concentration of gold is higher inside a nanoparticle. The biologic action of the nanoparticles toward human mesenchymal stem cells (hMSC) was different: Silver nanoparticles showed a significant concentration-dependent influence on the viability of hMSC. Gold nanoparticles showed only a small effect on the viability of hMSC after 7 days. Surprisingly, silver-gold nanoparticles had no significant influence on the viability of hMSC despite the silver content. Silver nanoparticles and silver-gold nanoparticles in the concentration range of 5-20 {mu}g mL{sup -1} induced the activation of hMSC as indicated by the release of IL-8. In contrast, gold nanoparticles led to a reduction of the release of IL-6 and IL-8.

  10. Synthesis and Characterization of Water-Soluble Conjugated Oligoelectrolytes for Near-Infrared Fluorescence Biological Imaging.

    Science.gov (United States)

    Woo, Shin-Jae; Park, Sungmin; Jeong, Ji-Eun; Hong, Yoochan; Ku, Minhee; Kim, Bo Yun; Jang, Il Ho; Heo, Soon Chul; Wang, Taejun; Kim, Ki Hean; Yang, Jaemoon; Kim, Jae Ho; Woo, Han Young

    2016-06-29

    Near-infrared (NIR) fluorophores attract increasing attention as a molecular marker (or probe) for in vivo and in vitro biological fluorescence imaging. Three types of new NIR fluorescent conjugated oligoelectrolytes (COEs: Q-FlTBTTFl, Q-FlBBTFl, and Q-FlTBBTTFl) are synthesized with quaternized ammonium ionic groups in their side-chains for water solubility. The emission wavelength is modulated in the range 600-1300 nm, by adjusting the intramolecular charge transfer in the molecular backbone based on the electron-rich fluorene (and/or thiophene) and electron-deficient benzo[2,1,3]thiadiazole (or benzo[1,2-c:4,5-c']bis[1,2,5]thiadiazole) moieties. The COEs show a remarkably larger Stokes shift (147-276 nm) compared to commercial rhodamine and cyanine dyes in water, avoiding self-quenching and interference from the excitation backscattered light. The photoluminescence (PL) quantum efficiency is improved substantially by up to 27.8% in water by fabricating a vesicular complex, COE/v, with a block ionomer, poly[(ethylene oxide)-block-(sodium 2-acrylamido-2-methyl-1-propanesulfonate)]. In vitro cellular uptake images with the COEs are obtained with good biocompatibility by confocal single-photon and two-photon microscopy. The ex vivo and in vivo images of a mouse xenograft model treated with the Q-FlBBTFl/v exhibit a substantially stronger fluorescence signal at the tumor site than at the other organs, highlighting the potential of the COE/v as an NIR fluorescent imaging agent for the diagnosis of cancer. PMID:27267787

  11. A systems biology approach to the characterization of stress response in Dermacentor reticulatus tick unfed larvae.

    Directory of Open Access Journals (Sweden)

    Margarita Villar

    Full Text Available BACKGROUND: Dermacentor reticulatus (Fabricius, 1794 is distributed in Europe and Asia where it infests and transmits disease-causing pathogens to humans, pets and other domestic and wild animals. However, despite its role as a vector of emerging or re-emerging diseases, very little information is available on the genome, transcriptome and proteome of D. reticulatus. Tick larvae are the first developmental stage to infest hosts, acquire infection and transmit pathogens that are transovarially transmitted and are exposed to extremely stressing conditions. In this study, we used a systems biology approach to get an insight into the mechanisms active in D. reticulatus unfed larvae, with special emphasis on stress response. PRINCIPAL FINDINGS: The results support the use of paired end RNA sequencing and proteomics informed by transcriptomics (PIT for the analysis of transcriptomics and proteomics data, particularly for organisms such as D. reticulatus with little sequence information available. The results showed that metabolic and cellular processes involved in protein synthesis were the most active in D. reticulatus unfed larvae, suggesting that ticks are very active during this life stage. The stress response was activated in D. reticulatus unfed larvae and a Rickettsia sp. similar to R. raoultii was identified in these ticks. SIGNIFICANCE: The activation of stress responses in D. reticulatus unfed larvae likely counteracts the negative effect of temperature and other stress conditions such as Rickettsia infection and favors tick adaptation to environmental conditions to increase tick survival. These results show mechanisms that have evolved in D. reticulatus ticks to survive under stress conditions and suggest that these mechanisms are conserved across hard tick species. Targeting some of these proteins by vaccination may increase tick susceptibility to natural stress conditions, which in turn reduce tick survival and reproduction, thus reducing

  12. Formation and biological characterization of three new types of improved crucian carp

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The improved tetraploids (G1×AT) were obtained by distant crossing and gynogenesis and the high-body individuals accounted for 2% among G1×AT. After mating with each other, the high-body in- dividuals produced three kinds of bisexual fertile diploid fishes: high-body red crucian carp, high-body fork-like-tails goldfish and gray common carp. The high-body red crucian carp mating with each other formed three types of improved crucian carp (ICC) including improved red crucian carp (IRCC), im- proved color crucian carp (ICCC) and improved gray crucian carp (IGCC). The phenotypes, chromo- some numbers, gonadal structure and fertility of the three kinds of ICC and their offspring were observed. All the three kinds of ICC possessed some improved phenotypes such as higher body, smaller head and shorter tail. The ratios of the body height to body length of IRCC, ICCC and IGCC were 0.54, 0.51 and 0.54, respectively. All of them were obviously higher than that of red crucian carp 0.41 (P<0.01). Three kinds of ICC had the same chromosome number as red crucian carp with 100 chromosomes. All the ICC possessed normal gonads producing mature eggs or sperm, which was important for the production of an improved diploid population. Compared with red crucian carp, all the ICC had stronger fertility such as higher gametes production, higher fertilization rate and higher hatchery rate. Three types of improved diploid fish population were generated from the three kinds of ICC by self-crossing, respectively. The ICC can serve as ornamental fish and edible fish. They are also ideal parents to produce triploids by mating with tetraploids. The new ICC plays an important role in biological evolution and fish genetic breeding.

  13. Formation and biological characterization of three new types of improved curcian carp

    Institute of Scientific and Technical Information of China (English)

    WANG Jing; LIU Yun; QIN QinBo; CHEN Song; LIU ShaoJun; DUAN Wei; LIU JinHui; ZHANG Chun; LUO KaiKun; XIAO Jun

    2008-01-01

    The improved tetraploids (G1×AT) were obtained by distant crossing and gynogenesis and the high-body individuals accounted for 2% among G1×AT. After mating with each other, the high-body in-dividuals produced three kinds of bisexual fertile diploid fishes: high-body red crucian carp, high-body fork-like-tails goldfish and gray common carp. The high-body red crucian carp mating with each other formed three types of improved crucian carp (ICC) including improved red crucian carp (IRCC), im-proved color crucian carp (ICCC) and improved gray crucian carp (IGCC). The phenotypes, chromo-some numbers, gonadal structure and fertility of the three kinds of ICC and their offspring were observed. All the three kinds of ICC possessed some improved phenotypes such as higher body, smaller head and shorter tail. The ratios of the body height to body length of IRCC, ICCC and IGCC were 0.54, 0.51 and 0.54, respectively. All of them were obviously higher than that of red crucian carp 0.41 (P<0.01). Three kinds of ICC had the same chromosome number as red crucian carp with 100 chromosomes. All the ICC possessed normal gonads producing mature eggs or sperm, which was important for the production of an improved diploid population. Compared with red crucian carp, all the ICC had stronger fertility such as higher gametes production, higher fertilization rate and higher hatchery rate. Three types of improved diploid fish population were generated from the three kinds of ICC by self-crossing, respectively. The ICC can serve as ornamental fish and edible fish. They are also ideal parents to produce triploids by mating with tetraploids. The new ICC plays an important role in biological evolution and fish genetic breeding.

  14. Characterization and biological activity of Taishan Pinus massoniana pollen polysaccharide in vitro.

    Directory of Open Access Journals (Sweden)

    Shifa Yang

    Full Text Available Taishan Pinus massoniana pollen polysaccharide (TPPPS improves cellular and humoral immune responses of animals and is a novel potential immunomodulator. However, the components of TPPPS have not been recognized. To investigate the composition of TPPPS, crude polysaccharide was obtained from Taishan P. massoniana pollen through water extraction and ethanol precipitation. Three homogeneous polysaccharide fractions (TPPPS1, TPPPS2, and TPPPS3 were purified from TPPPS by DEAE-cellulose column chromatography. The average molecular weights of the three polysaccharides were 56, 25, and 128 kDa, respectively. Results of high-performance liquid chromatography (HPLC showed that TPPPS comprised mannose, ribose, xylose, glucuronic acid, galacturonic acid, glucose, galactose, and arabinose. The biological activity assays showed that TPPPS2 and TPPPS3 significantly promoted spleen lymphocyte proliferation, and that TPPPS3 showed better effect than TPPPS2. TPPPS3 enhanced the secretion of cytokine IL-2 and TNF, whereas TPPPS2 mainly elevated IL-2 secretion. By contrast, TPPPS1 exhibited other effects, and it induced the highest amount of NO production, thereby indicating that TPPPS1 had the best antioxidant activity. TPPPS3 at 50 μg/mL significantly inhibited the proliferation of subgroup B Avian Leukosis virus (ALV-B through virus adsorption interference in vitro. Results indicated that TPPPS comprised three main components, among which, TPPPS1 mainly showed antioxidant effects, whereas TPPPS2 and TPPPS3 played key roles in immunomodulation, especially TPPPS3. Further studies on the use of a reasonable proportion of TPPPS1-3 may facilitate the development of an effective immunomodulator.

  15. Synthesis of biological active thiosemicarbazone and characterization of the interaction with human serum albumin

    Energy Technology Data Exchange (ETDEWEB)

    Yu, Wangshu; Shi, Lei; Hui, Guangquan [College of Chemistry and Environmental Science, Henan Normal University, Xinxiang 453007 (China); Cui, Fengling, E-mail: fenglingcui@hotmail.com [College of Chemistry and Environmental Science, Henan Normal University, Xinxiang 453007 (China)

    2013-02-15

    The synthesis of a new biological active reagent, 2-((1,4-dihydroxy)-9,10-anthraquinone) aldehyde thiosemicarbazone (DHAQTS), was designed. The interaction between DHAQTS and HSA was studied by fluorescence spectroscopy in combination with molecular modeling under simulation of physiological conditions. According to the results of fluorescence measurements, the quenching mechanism was suggested to be static. The thermodynamic parameters are calculated by van't Hoff equation, which demonstrated that hydrophobic interactions are the predominant intermolecular forces stabilizing the complex. The number of binding sites (n) was calculated. Through the site marker competitive experiment, DHAQTS was confirmed to be located in site I of HSA. The binding distance r=2.83 nm between the donor HSA and acceptor DHAQTS was obtained according to Foerster's non-radiative energy transfer theory. The three-dimensional fluorescence spectral results showed the conformation and microenvironment of HSA changed in the presence of DHAQTS. The effects of common ions on the binding of DHAQTS to HSA were also evaluated. The experimental results were in agreement with the results obtained via a molecular docking study. - Highlights: Black-Right-Pointing-Pointer 2-((1,4-dihydroxy)-9,10-anthraquinone)aldehyde thiosemicarbazone (DHAQTS) was synthesized. Black-Right-Pointing-Pointer DHAQTS can quench the fluorescence of human serum albumin (HSA) by static quenching mechanism. Black-Right-Pointing-Pointer Hydrophobic interactions were the predominant intermolecular forces. Black-Right-Pointing-Pointer The competitive experiment was carried out to identify the DHAQTS binding site on HSA. Black-Right-Pointing-Pointer Three-dimensional spectra confirmed DHAQTS caused the conformational change of HSA.

  16. Synthesis of biological active thiosemicarbazone and characterization of the interaction with human serum albumin

    International Nuclear Information System (INIS)

    The synthesis of a new biological active reagent, 2-((1,4-dihydroxy)-9,10-anthraquinone) aldehyde thiosemicarbazone (DHAQTS), was designed. The interaction between DHAQTS and HSA was studied by fluorescence spectroscopy in combination with molecular modeling under simulation of physiological conditions. According to the results of fluorescence measurements, the quenching mechanism was suggested to be static. The thermodynamic parameters are calculated by van't Hoff equation, which demonstrated that hydrophobic interactions are the predominant intermolecular forces stabilizing the complex. The number of binding sites (n) was calculated. Through the site marker competitive experiment, DHAQTS was confirmed to be located in site I of HSA. The binding distance r=2.83 nm between the donor HSA and acceptor DHAQTS was obtained according to Förster's non-radiative energy transfer theory. The three-dimensional fluorescence spectral results showed the conformation and microenvironment of HSA changed in the presence of DHAQTS. The effects of common ions on the binding of DHAQTS to HSA were also evaluated. The experimental results were in agreement with the results obtained via a molecular docking study. - Highlights: ► 2-((1,4-dihydroxy)-9,10-anthraquinone)aldehyde thiosemicarbazone (DHAQTS) was synthesized. ► DHAQTS can quench the fluorescence of human serum albumin (HSA) by static quenching mechanism. ► Hydrophobic interactions were the predominant intermolecular forces. ► The competitive experiment was carried out to identify the DHAQTS binding site on HSA. ► Three-dimensional spectra confirmed DHAQTS caused the conformational change of HSA.

  17. Silver, gold, and alloyed silver–gold nanoparticles: characterization and comparative cell-biologic action

    International Nuclear Information System (INIS)

    Silver, gold, and silver–gold-alloy nanoparticles were prepared by citrate reduction modified by the addition of tannin during the synthesis, leading to a reduction in particle size by a factor of three. Nanoparticles can be prepared by this easy water-based synthesis and subsequently functionalized by the addition of either tris(3-sulfonatophenyl)phosphine or poly(N-vinylpyrrolidone). The resulting nanoparticles of silver (diameter 15–25 nm), gold (5–6 nm), and silver–gold (50:50; 10–12 nm) were easily dispersable in water and also in cell culture media (RPMI + 10 % fetal calf serum), as shown by nanoparticle tracking analysis and differential centrifugal sedimentation. High-resolution transmission electron microscopy showed a polycrystalline nature of all nanoparticles. EDX on single silver–gold nanoparticles indicated that the concentration of gold is higher inside a nanoparticle. The biologic action of the nanoparticles toward human mesenchymal stem cells (hMSC) was different: Silver nanoparticles showed a significant concentration-dependent influence on the viability of hMSC. Gold nanoparticles showed only a small effect on the viability of hMSC after 7 days. Surprisingly, silver–gold nanoparticles had no significant influence on the viability of hMSC despite the silver content. Silver nanoparticles and silver–gold nanoparticles in the concentration range of 5–20 μg mL−1 induced the activation of hMSC as indicated by the release of IL-8. In contrast, gold nanoparticles led to a reduction of the release of IL-6 and IL-8.

  18. Comparison of Biological and Immunological Characterization of Lipopolysaccharides From Brucella abortus RB51 and S19

    Science.gov (United States)

    Kianmehr, Zahra; Kaboudanian Ardestani, Sussan; Soleimanjahi, Hoorieh; Fotouhi, Fatemeh; Alamian, Saeed; Ahmadian, Shahin

    2015-01-01

    Background: Brucella abortus RB51 is a rough stable mutant strain, which has been widely used as a live vaccine for prevention of brucellosis in cattle instead of B. abortus strain S19. B. abortus lipopolysaccharide (LPS) has unique properties in comparison to other bacterial LPS. Objectives: In the current study, two types of LPS, smooth (S-LPS) and rough (R-LPS) were purified from B. abortus S19 and RB51, respectively. The aim of this study was to evaluate biological and immunological properties of purified LPS as an immunogenical determinant. Materials and Methods: Primarily, S19 and RB51 LPS were extracted and purified by two different modifications of the phenol water method. The final purity of LPS was determined by chemical analysis (2-keto-3-deoxyoctonate (KDO), glycan, phosphate and protein content) and different staining methods, following sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). C57BL/6 mice were immunized subcutaneously three times at biweekly intervals with the same amount of purified LPSs. The humoral immunity was evaluated by measuring specific IgG levels and also different cytokine levels, such as IFN-γ, TNF-α, IL-4 and IL-10, were determined for assessing T-cell immune response. Results: Biochemical analysis data and SDS-PAGE profile showed that the chemical nature of S19 LPS is different from RB51 LPS. Both S and R-LPS induce an immune response. T-cell immune response induced by both S and R-LPS had almost the same pattern whereas S19 LPS elicited humoral immunity, which was higher than RB51 LPS. Conclusions: Purified LPS can be considered as a safe adjuvant and can be used as a component in prophylactic and therapeutic vaccines targeting infectious disease, cancer and allergies. PMID:26862376

  19. Isolation and biological characterization of a basic phospholipase A2 from Bothrops jararacussu snake venom

    Directory of Open Access Journals (Sweden)

    S.L. Maruñak

    2007-12-01

    Full Text Available A phospholipase A2 has been isolated from Bothrops jararacussu venom from snakes that inhabit the northeast region of Argentina. The present study describes in vivo and in vitro biological activities of phospholipase A2 from B. jararacussu as well as isolation details of its. Venom was obtained by milking of adult snakes which were housing in wood reptile cages of varying dimensions in heated (20-30ºC rooms. Snakes received a weekly diet of mice and water was available ad libitum for drinking and soaking. The enzyme was purified by gel filtration on a Sephadex G-75 column followed by ion exchange chromatography on a SP-Sephadex C25 column. The major peak belonging to proteins was retained in the cation exchanger and then eluted using a concentration gradient of KCl that exhibited phospholipase activity. This basic PLA2 consists of a single polypeptide chain with a molecular mass of 15.6 kDa. It had a high indirect hemolytic activity and produced a significant paw edema reaction in mice. The enzyme showed a low lethality (LD50 148.6 mg when was administered i.p. but exhibited elevated myotoxic effects in vivo by increasing plasma CK activity of injected mice, corroborated results by the histological observations of samples of gastrocnemius muscle. Myonecrosis is the result of intense destruction of muscular fibers that involves local infiltration of inflammatory cells and leads to the highest peak of CK level just after 1 hour mice injection. Moreover, the isolated enzyme showed anticoagulant activity, evaluated on sheep platelet-poor plasma which recalcification time was prolonged after incubation with the isolated phospholipase A2. These findings showed that this phospholipase, isolated by only two simple chromatographic steps, possesses high edematogenic and myotoxic activities. However, despite the low lethal activity, this enzyme would contribute markedly to the pathophysiology of the bothropic envenomation.

  20. Characterization and biological activity of Taishan Pinus massoniana pollen polysaccharide in vitro.

    Science.gov (United States)

    Yang, Shifa; Wei, Kai; Jia, Fengjuan; Zhao, Xue; Cui, Guolin; Guo, Fanxia; Zhu, Ruiliang

    2015-01-01

    Taishan Pinus massoniana pollen polysaccharide (TPPPS) improves cellular and humoral immune responses of animals and is a novel potential immunomodulator. However, the components of TPPPS have not been recognized. To investigate the composition of TPPPS, crude polysaccharide was obtained from Taishan P. massoniana pollen through water extraction and ethanol precipitation. Three homogeneous polysaccharide fractions (TPPPS1, TPPPS2, and TPPPS3) were purified from TPPPS by DEAE-cellulose column chromatography. The average molecular weights of the three polysaccharides were 56, 25, and 128 kDa, respectively. Results of high-performance liquid chromatography (HPLC) showed that TPPPS comprised mannose, ribose, xylose, glucuronic acid, galacturonic acid, glucose, galactose, and arabinose. The biological activity assays showed that TPPPS2 and TPPPS3 significantly promoted spleen lymphocyte proliferation, and that TPPPS3 showed better effect than TPPPS2. TPPPS3 enhanced the secretion of cytokine IL-2 and TNF, whereas TPPPS2 mainly elevated IL-2 secretion. By contrast, TPPPS1 exhibited other effects, and it induced the highest amount of NO production, thereby indicating that TPPPS1 had the best antioxidant activity. TPPPS3 at 50 μg/mL significantly inhibited the proliferation of subgroup B Avian Leukosis virus (ALV-B) through virus adsorption interference in vitro. Results indicated that TPPPS comprised three main components, among which, TPPPS1 mainly showed antioxidant effects, whereas TPPPS2 and TPPPS3 played key roles in immunomodulation, especially TPPPS3. Further studies on the use of a reasonable proportion of TPPPS1-3 may facilitate the development of an effective immunomodulator. PMID:25782009

  1. Physical, chemical and biological characterization of six biochars produced for the remediation of contaminated sites.

    Science.gov (United States)

    Denyes, Mackenzie J; Parisien, Michèle A; Rutter, Allison; Zeeb, Barbara A

    2014-01-01

    The physical and chemical properties of biochar vary based on feedstock sources and production conditions, making it possible to engineer biochars with specific functions (e.g. carbon sequestration, soil quality improvements, or contaminant sorption). In 2013, the International Biochar Initiative (IBI) made publically available their Standardized Product Definition and Product Testing Guidelines (Version 1.1) which set standards for physical and chemical characteristics for biochar. Six biochars made from three different feedstocks and at two temperatures were analyzed for characteristics related to their use as a soil amendment. The protocol describes analyses of the feedstocks and biochars and includes: cation exchange capacity (CEC), specific surface area (SSA), organic carbon (OC) and moisture percentage, pH, particle size distribution, and proximate and ultimate analysis. Also described in the protocol are the analyses of the feedstocks and biochars for contaminants including polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), metals and mercury as well as nutrients (phosphorous, nitrite and nitrate and ammonium as nitrogen). The protocol also includes the biological testing procedures, earthworm avoidance and germination assays. Based on the quality assurance / quality control (QA/QC) results of blanks, duplicates, standards and reference materials, all methods were determined adequate for use with biochar and feedstock materials. All biochars and feedstocks were well within the criterion set by the IBI and there were little differences among biochars, except in the case of the biochar produced from construction waste materials. This biochar (referred to as Old biochar) was determined to have elevated levels of arsenic, chromium, copper, and lead, and failed the earthworm avoidance and germination assays. Based on these results, Old biochar would not be appropriate for use as a soil amendment for carbon sequestration, substrate quality

  2. Characterizing CMN1308, a Novel Strain of Bacillus amyloliquefaciens, for Potential Biological Control Application

    Directory of Open Access Journals (Sweden)

    Xuehua ZHANG

    2016-06-01

    Full Text Available Fungal diseases of plants continue to contribute to heavy crop losses in spite of the best control efforts of plant pathologists. Breeding for disease-resistant varieties and the application of synthetic chemical fungicides are the most widely accepted approaches in plant disease management. CMN1308 strain of Bacillus amyloliquefaciens was isolated from healthy Chinese chestnut fruit, which has antibiosis and induced resistance to the prevention mechanism of pathogenic bacterium after picking. In order to evaluate the antibiosis mechanism, CMN1308 was fostered with the method of confront culture. The antimicrobial components were also isolated from the culture of CMN1308, and their stability and antimicrobial activity was tested under different treatments such as temperature, pH and UV. The results showed that CMN1308 displays advantages in regard to spatial competition against the major pathogens of chestnut, Rhizopus stolonifer, Fusarium solani, Stachybotrys chartarum, Cryphonectria parasitica, Lasiodiplodia theobromae, Penicillium expansum and Aspergillus niger. Among this, CMN1308 had the best antimicrobial activity against P. expansum, with the inhibition zone diameter of 27.1 mm. The antimicrobial material isolated from CMN1308 culture showed a strong inhibition to the growth of P. expansum hyphal and also had a good stability to high temperature, alkali media and UV, but was sensitive to acidic conditions. Furthermore, CMN1308 increased the peroxidase, polyphenol oxidase activity and reduced the MDA content in chestnuts after infecting by pathogenic fungi. Thus, producing antibiotic compounds and inducible resistance are the main factors that may explain the antibacterial mechanism of CMN1308 on chestnut pathogenic. The results of this study might help to optimize the practical use of CMN1308 in the biological control of chestnut rot or other fruit rot infected by pathogenic fungi.

  3. Molecular and biological characterization of a mannan-binding lectin from the holothurian Apostichopus japonicus.

    Science.gov (United States)

    Bulgakov, Aleksandr A; Eliseikina, Marina G; Petrova, Irina Yu; Nazarenko, Evgeny L; Kovalchuk, Svetlana N; Kozhemyako, Valery B; Rasskazov, Valery A

    2007-12-01

    To elucidate the origin and evolution of mannan-binding lectins (MBL), a new C-type lectin (CTL) specific for high-mannose glycans (MBL-AJ) was isolated from the coelomic plasma of the holothurian Apostichopus japonicus. MBL-AJ has oligomeric forms with identical 17-kDa subunits on SDS-PAGE. Among natural ligands, lectin hemagglutination activity was competitively inhibited by extracellular low-branched, but not high-branched, alpha-D-mannans isolated from marine halophilic bacteria and composed of alpha-1,2 and alpha-1,6 linked D-mannose residues. This suggests that the lectin interacts with backbone or inner side chain mannose residues, but not with terminal ones. The activity of the lectin was Ca(2+)-, pH-, and temperature-dependent. MBL-AJ cDNA was cloned from a holothurian coelomocyte cDNA library. The subunit of the mature protein has 159 amino acids and a single carbohydrate-recognition domain (CRD) of CTL. CRD contains a Glu-Pro-Asp amino acid sequence (EPN-motif) conserved for all known MBLs. A monospecific polyclonal antibody against MBL-AJ was obtained using the 34-kDa lectin dimer as an immunogen. The MBL-AJ has demonstrated immunochemical identity to the earlier isolated mannan-binding CTL from another holothurian, Cucumaria japonica. But a more interesting finding was cross-reactivity of MBL-AJ and human serum MBL detected by the antibody against MBL-AJ. Taking into consideration such MBL-AJ peculiarities as its carbohydrate specificity, the presence of a conserved region forming the mannose-binding site, common antigenic determinants with human MBL, and participation in defense reactions, it is possible that MBL-AJ belongs to the family of evolutionary conserved mannan-binding proteins. PMID:17890508

  4. Synthesis, Characterization and Functionalization of Polymeric Nanoparticles and Investigation of the Interaction with Biological Systems

    International Nuclear Information System (INIS)

    One of the main goals of nanomedicine is to improve the treatment of hazardous diseases whose conventional therapy often has serious side effects. The vision is to create a theranostic drug delivery system which is capable of safely transporting therapeutic cargo through the body to a targeted site of disease at which point the drug is released. Furthermore, it is desirable to track the carrier in real time which would allow for a personal adjustment of the therapy. Studies on the behavior of nanoparticulate substances in a physiological environment form the basis for the possibility to successfully develop a drug carrier system. In the present work, polymeric nanoparticles with different morphologies were prepared by the controlled self-assembly of amphiphilic block copolymers. The nanoparticles were subsequently characterized and their interactions with human cells and serum proteins investigated. A cytotoxicity study with spherical and cylindrical micelles as well as vesicular structures was carried out and showed a dependency of cytotoxic effects on the geometry and size of the nanoparticles. The agglomeration behavior of various polymeric nanoparticles in the presence of serum proteins was also studied. Highly uniform polymeric vesicles were continuously manufactured in a micromixer based device and in situ loading with different components was performed. In this way, dual loaded vesicles with the anticancer drug camptothecin and a high amount of hydrophobic iron oxide nanoparticles were produced. When tested in vitro, these drug-loaded vesicles showed an increased cytotoxic activity against the cancer cell line PC-3 when compared to the free drug. Specific cellular uptake in PC-3 cancer cells was demonstrated with flow cytometry and confocal laser scanning microscopy after functionalization with a cancer cell specific targeting peptide and an additional fluorescent label. Magnetic characterization of the iron oxide-loaded vesicles also confirmed the potential

  5. Ruthenium(II) chalconate complexes: Synthesis, characterization, catalytic, and biological studies

    Science.gov (United States)

    Muthukumar, M.; Viswanathamurthi, P.

    2009-10-01

    A series of new hexa-coordinated ruthenium(II) carbonyl complexes of the type [RuCl(CO)(EPh 3)(B)(L)] (E = P or As; B = PPh 3, AsPh 3 or Py; L = 2'-hydroxychalcones) have been prepared by reacting [RuHCl(CO)(EPh 3) 2(B)] (E = P or As; B = PPh 3, AsPh 3 or Py) with 2'-hydroxychalcones in benzene under reflux. The new complexes have been characterized by analytical and spectral (IR, electronic, 1H, 31P and 13C NMR) data. Based on the above data, an octahedral structure has been assigned for all the complexes. The new complexes exhibit catalytic activity for the oxidation of primary and secondary alcohols into their corresponding aldehydes and ketones in the presence of N-methylmorpholine- N-oxide (NMO) as co-oxidant and also found efficient catalyst in the transfer hydrogenation of ketones. The antifungal properties of the complexes have also been examined and compared with standard Bavistin.

  6. Kinetic and stoichiometric characterization for efficient enhanced biological phosphorus removal (EBPR) process at high temperatures.

    Science.gov (United States)

    Liau, Kee Fui; Shoji, Tadashi; Ong, Ying Hui; Chua, Adeline Seak May; Yeoh, Hak Koon; Ho, Pei Yee

    2015-04-01

    A recently reported stable and efficient EBPR system at high temperatures around 30 °C has led to characterization of kinetic and stoichiometric parameters of the Activated Sludge Model no. 2d (ASM2d). Firstly, suitable model parameters were selected by identifiability analysis. Next, the model was calibrated and validated. ASM2d was found to represent the processes well at 28 and 32 °C except in polyhyroxyalkanoate (PHA) accumulation of the latter. The values of the kinetic parameters for PHA storage (q PHA), polyphosphate storage (q PP) and growth (μ PAO) of polyphosphate-accumulating organisms (PAOs) at 28 and 32 °C were found to be much higher than those reported by previous studies. Besides, the value of the stoichiometric parameter for the requirement of polyphosphate for PHA storage (Y PO4) was found to decrease as temperature rose from 28 to 32 °C. Values of two other stoichiometric parameters, i.e. the growth yield of heterotrophic organisms (Y H) and PAOs (Y PAO), were high at both temperatures. These calibrated parameters imply that the extremely active PAOs of the study were able to store PHA, store polyphosphate and even utilize PHA for cell growth. Besides, the parameters do not follow the Arrhenius correlation due to the previously reported unique microbial clade at 28 and 32 °C, which actively performs EBPR at high temperatures. PMID:25381606

  7. Metal based isatin-derived sulfonamides: their synthesis, characterization, coordination behavior and biological activity.

    Science.gov (United States)

    Chohan, Zahid H; Supuran, Claudiu T; Ben Hadda, Taibi; Nasim, Faiz-Ul-Hassan; Khan, Khalid M

    2009-06-01

    Some isatin derived sulfonamides and their transition metal [Co(II), Cu(II), Ni(II), Zn(II)] complexes have been synthesized and characterized. The structure of synthesized compounds and their nature of bonding have been inferred on the basis of their physical (magnetic susceptibility and conductivity measurements), analytical (elemental analyses) and spectral (IR, (1)H NMR and (13)C NMR) properties. An octahedral geometry has been suggested for Co(II), Ni(II) and Zn(II) and square-planar for Cu(II) complexes. In order to assess the antibacterial and antifungal behavior, the ligands and their metal(II) complexes were screened for their in vitro antibacterial activity against four Gram-negative species, Escherichia coli, Shigella flexneri, Pseudomonas aeruginosa and Salmonella typhi and two Gram-positive species, Staphylococcus aureus and Bacillus subtilis and, for in vitro antifungal activity against Trichophyton longifusus, Candida albicans, Aspergillus flavus, Microsporum canis, Fusarium solani and Candida glaberata. In vitro cytotoxic properties of all the compounds were also studied against Artemia salina by brine shrimp bioassay. The results of average antibacterial/antifungal activity showed that zinc(II) complexes were found to be the most active against one or more bacterial/fungal strains as compared to the other metal complexes. PMID:18825557

  8. Synthesis and characterization of biologically active recombinant elk and horse FSH.

    Science.gov (United States)

    Fachal, María Victoria; Furlan, Mike; Clark, Rena; Card, Claire E; Chedrese, P Jorge

    2010-02-01

    The objective of this investigation was to clone and express the elk and horse common alpha-subunit and FSH beta-subunit cDNAs, and to produce recombinant FSH from both species in vitro. The RNAs extracted from elk and horse pituitary glands were reverse-transcribed and amplified by polymerase chain reaction. The cDNAs corresponding to both subunits of elk and horse were cloned into the expression vector pBudCE4.1 and transfected into CRL-9096 cells. Expression of both genes was determined in the transfected cells by Northern and Western blot analysis. Recombinant elk and horse FSH secreted in culture media were characterized by an in vitro bioassay and RIA. When the recombinant products were assessed as activity over mass of FSH measured by RIA, the horse product was 5.6 times more potent than the elk product. The recombinant products injected to immature female Wistar rats stimulated ovarian growth. The results suggest that the products obtained correspond to recombinant versions of the native elk and horse FSH. The availability of these recombinant products may aid in the development of more predictable and efficient techniques of ovarian stimulation in cervids, equids, and other species as well. PMID:19500922

  9. Model Analytical Development for Physical, Chemical, and Biological Characterization of Momordica charantia Vegetable Drug.

    Science.gov (United States)

    Brandão, Deysiane Oliveira; Guimarães, Geovani Pereira; Santos, Ravely Lucena; Júnior, Fernando José de Lima Ramos; da Silva, Karla Monik Alves; de Souza, Fabio Santos; Macêdo, Rui Oliveira

    2016-01-01

    Momordica charantia is a species cultivated throughout the world and widely used in folk medicine, and its medicinal benefits are well documented, especially its pharmacological properties, including antimicrobial activities. Analytical methods have been used to aid in the characterization of compounds derived from plant drug extracts and their products. This paper developed a methodological model to evaluate the integrity of the vegetable drug M. charantia in different particle sizes, using different analytical methods. M. charantia was collected in the semiarid region of Paraíba, Brazil. The herbal medicine raw material derived from the leaves and fruits in different particle sizes was analyzed using thermoanalytical techniques as thermogravimetry (TG) and differential thermal analysis (DTA), pyrolysis coupled to gas chromatography/mass spectrometry (PYR-GC/MS), and nuclear magnetic resonance ((1)H NMR), in addition to the determination of antimicrobial activity. The different particle surface area among the samples was differentiated by the techniques. DTA and TG were used for assessing thermal and kinetic parameters and PYR-GC/MS was used for degradation products chromatographic identification through the pyrograms. The infusions obtained from the fruit and leaves of Momordica charantia presented antimicrobial activity. PMID:27579215

  10. Screening and characterization of molecules that modulate the biological activity of IFNs-I.

    Science.gov (United States)

    Bürgi, Milagros; Zapol'skii, Viktor A; Hinkelmann, Bettina; Köster, Mario; Kaufmann, Dieter E; Sasse, Florenz; Hauser, Hansjörg; Etcheverrigaray, Marina; Kratje, Ricardo; Bollati-Fogolín, Mariela; Oggero, Marcos

    2016-09-10

    Type I Interferons (IFNs-I) are species-specific glycoproteins which play an important role as primary defence against viral infections and that can also modulate the adaptive immune system. In some autoimmune diseases, interferons (IFNs) are over-produced. IFNs are widely used as biopharmaceuticals for a variety of cancer indications, chronic viral diseases, and for their immuno-modulatory action in patients with multiple sclerosis; therefore, increasing their therapeutic efficiency and decreasing their side effects is of high clinical value. In this sense, it is interesting to find molecules that can modulate the activity of IFNs. In order to achieve that, it was necessary to establish a simple, fast and robust assay to analyze numerous compounds simultaneously. We developed four reporter gene assays (RGAs) to identify IFN activity modulator compounds by using WISH-Mx2/EGFP, HeLa-Mx2/EGFP, A549-Mx2/EGFP, and HEp2-Mx2/EGFP reporter cell lines (RCLs). All of them present a Z' factor higher than 0.7. By using these RGAs, natural and synthetic compounds were analyzed simultaneously. A total of 442 compounds were studied by the Low Throughput Screening (LTS) assay using the four RCLs to discriminate between their inhibitory or enhancing effects on IFN activity. Some of them were characterized and 15 leads were identified. Finally, one promising candidate with enhancing effect on IFN-α/-β activity and five compounds with inhibitory effect were described. PMID:27346232

  11. Purification, characterization and biological activity of a novel polysaccharide from Inonotus obliquus.

    Science.gov (United States)

    Chen, Yiyong; Huang, Youru; Cui, Zhumei; Liu, Jingjing

    2015-08-01

    A novel water-soluble polysaccharide IP3a was successfully isolated and purified from I. obliquus by DEAE-cellulose, Sepharose CL-6B and Sephadex G-200 column chromatography. Chemical characterization and antitumor and immunoregulatory activity of IP3a were investigated. IP3a consisted of rhamnose, arabinose, glucose and galactose in a molar ratio of 2.5:4.6:1.0:2.6 with an average molecular weight of 48,820 Da. IP3a exhibited no significant antitumor activities in vitro. However, IP3a could not only inhibit the growth of transplantable Jurkat tumor in mice significantly, but also could enhance the splenocyte proliferation and lymphocyte proliferation induced by ConA and LPS in a dose-dependent manner. At the same time, IP3a could promote cytokine secretion (IL-2, IL-6, IL-12 and TNF-α) and macrophage phagocytosis in mice. In addition, IP3a could increase Bax expression and inhibit Bcl-2 expression significantly. These results suggested that antitumor mechanisms of IP3a might be associated with improving immune response in vivo and inducing apoptosis of tumor cells in vitro. IP3a might be utilized as a potential therapeutic agent against lymphoma cancer with immunomodulatory activity. PMID:26026982

  12. Pharmacokinetic Comparability of a Biosimilar Trastuzumab Anticipated from Its Physicochemical and Biological Characterization

    Directory of Open Access Journals (Sweden)

    Mariana P. Miranda-Hernández

    2015-01-01

    Full Text Available Comparability between a biosimilar and its reference product requires the evaluation of critical quality attributes that may impact on its pharmacological response. Herein we present a physicochemical characterization of a biosimilar trastuzumab focused on the attributes related to the pharmacokinetic response. Capillary isoelectrofocusing (cIEF and cation exchange chromatography (CEX were used to evaluate charge heterogeneity; glycosylation profiles were assessed through hydrophilic interaction liquid chromatography (HILIC; aggregates content was evaluated through size exclusion chromatography (SEC while binding affinity to FcRn was evaluated using isothermal titration calorimetry (ITC. The biosimilar trastuzumab and its reference product exhibited a high degree of similarity for the evaluated attributes. In regard to the pharmacokinetic parameters, randomized, double blind, and two-arm parallel and prospective study was employed after the administration of a single intravenous dose in healthy volunteers. No significant differences were found between the pharmacokinetic profiles of both products. Our results confirm that similarity of the critical quality attributes between a biosimilar product, obtained from a different manufacturing process, and the reference product resulted in comparable pharmacokinetic profiles, diminishing the uncertainty related to the biosimilar’s safety and efficacy.

  13. Model Analytical Development for Physical, Chemical, and Biological Characterization of Momordica charantia Vegetable Drug

    Science.gov (United States)

    Guimarães, Geovani Pereira; Santos, Ravely Lucena; Júnior, Fernando José de Lima Ramos; da Silva, Karla Monik Alves; de Souza, Fabio Santos

    2016-01-01

    Momordica charantia is a species cultivated throughout the world and widely used in folk medicine, and its medicinal benefits are well documented, especially its pharmacological properties, including antimicrobial activities. Analytical methods have been used to aid in the characterization of compounds derived from plant drug extracts and their products. This paper developed a methodological model to evaluate the integrity of the vegetable drug M. charantia in different particle sizes, using different analytical methods. M. charantia was collected in the semiarid region of Paraíba, Brazil. The herbal medicine raw material derived from the leaves and fruits in different particle sizes was analyzed using thermoanalytical techniques as thermogravimetry (TG) and differential thermal analysis (DTA), pyrolysis coupled to gas chromatography/mass spectrometry (PYR-GC/MS), and nuclear magnetic resonance (1H NMR), in addition to the determination of antimicrobial activity. The different particle surface area among the samples was differentiated by the techniques. DTA and TG were used for assessing thermal and kinetic parameters and PYR-GC/MS was used for degradation products chromatographic identification through the pyrograms. The infusions obtained from the fruit and leaves of Momordica charantia presented antimicrobial activity.

  14. Characterization of pressurized hot water extracts of grape pomace: chemical and biological antioxidant activity.

    Science.gov (United States)

    Vergara-Salinas, J R; Vergara, Mauricio; Altamirano, Claudia; Gonzalez, Álvaro; Pérez-Correa, J R

    2015-03-15

    Pressurized hot water extracts obtained at different temperatures possess different compositions and antioxidant activities and, consequently, different bioactivities. We characterized two pressurized hot water extracts from grape pomace obtained at 100°C (GPE100) and 200°C (GPE200) in terms of antioxidant activity and composition, as well as protective effect on cell growth and mitochondrial membrane potential (Δψm) in a HL-60 cell culture under oxidative conditions. GPE100 extracts were richer in polyphenols and poorer in Maillard reaction products (MRPs) than were GPE200 extracts. Moreover, hydroxymethylfurfural was detected only in GPE200. Both extracts exhibited similar protective effects on cell growth (comparable to the effect of trolox). In addition, GPE100 strongly decreased the Δψm loss, reaching values even lower than those of the control culture. This protective effect may be related to its high polyphenols content. At the highest concentration assessed, both extracts showed strong cytotoxicity, especially GPE200. This cytotoxicity could be related to their MRPs content. PMID:25308643

  15. Linolenic acid grafted hyaluronan: Process development, structural characterization, biological assessing, and stability studies.

    Science.gov (United States)

    Huerta-Angeles, Gloria; Brandejsová, Martina; Kulhánek, Jaromír; Pavlík, Vojtěch; Šmejkalová, Daniela; Vágnerová, Hana; Velebný, Vladimír

    2016-11-01

    In this study, hyaluronan (HA) was grafted with alpha-linolenic acid (αLNA) by benzoyl mixed anhydrides methodology, which allowed the derivatization of HA under mild reaction conditions. The reaction was optimized and transferred from laboratory to semi-scale production. The derivative revealed an unexpected cytotoxicity after oven drying and storage at 40°C. For this reason, the storage conditions of sodium linolenyl hyaluronate (αLNA-HA) were optimized in order to preserve the beneficial effect of the derivative. Oven, spray dried and lyophilized samples were prepared and stored at -20°C, 4°C and 25°C up to 6 months. A comprehensive material characterization including stability study of the derivative, as well as evaluation of possible changes on chemical structure and presence of peroxidation products were studied by Nuclear magnetic resonance (NMR), Fourier transform infrared spectroscopy (FTIR), gas chromatography-mass spectrometry (GC-MS), thermogravimetric analysis (TGA) and complemented with assessment of in vitro viability on mouse fibroblasts NIH-3T3. The most stable αLNA-HA derivative was obtained after spray drying and storage at ambient temperature under inert atmosphere. The choice of inert atmosphere is recommended to suppress oxidation of αLNA supporting the positive influence of the derivative on cell viability. The encapsulation of hydrophobic drugs of αLNA-HA were also demonstrated. PMID:27516333

  16. Physicochemical and biological characterization of 1E10 Anti-Idiotype vaccine

    Directory of Open Access Journals (Sweden)

    Machado Yoan J

    2011-11-01

    Full Text Available Abstract Background 1E10 monoclonal antibody is a murine anti-idiotypic antibody that mimics N-glycolyl-GM3 gangliosides. This antibody has been tested as an anti-idiotypic cancer vaccine, adjuvated in Al(OH3, in several clinical trials for melanoma, breast, and lung cancer. During early clinical development this mAb was obtained in vivo from mice ascites fluid. Currently, the production process of 1E10 is being transferred from the in vivo to a bioreactor-based method. Results Here, we present a comprehensive molecular and immunological characterization of 1E10 produced by the two different production processes in order to determine the impact of the manufacturing process in vaccine performance. We observed differences in glycosylation pattern, charge heterogeneity and structural stability between in vivo-produced 1E10 and bioreactor-obtained 1E10. Interestingly, these modifications had no significant impact on the immune responses elicited in two different animal models. Conclusions Changes in 1E10 primary structure like glycosylation; asparagine deamidation and oxidation affected 1E10 structural stability but did not affect the immune response elicited in mice and chickens when compared to 1E10 produced in mice.

  17. Synthesis, Characterization, Luminescence and Biological Activity of Two Lanthanide Complexes Involving Mixed Ligands

    Energy Technology Data Exchange (ETDEWEB)

    Ma, Deyun; Guo, Haifu; Qin, Liang [Zhaoqing Univ., Zhaoqing (China); Xu, Jun [Jinan Univ., Guangzhou (China)

    2013-09-15

    Two new isostructural dinuclear complexes, Ln{sub 2}(4-cpa){sub 6}(bpy){sub 2} (Ln = Eu (1); Tb (2), 4-cpa = 4-chlorophenyl-acetate, bpy = 2,2'-bipyridine), have been hydrothermally synthesized and characterized by IR spectroscopy, elemental analysis, thermogravimetric analysis (TGA), powder X-ray diffraction and single-crystal X-ray diffraction. The lanthanide ions are bridged by two bidentate and two terdentate carboxylate groups to give centrosymmetric dimers with Ln···Ln separations of 3.967(2) and 3.956(3) A, respectively. Each metal atom is nine-coordinate and exhibits a distorted tricapped trigonal prismatic geometry. Three-dimensional fluorescence spectra show that both 1 and 2 emit bright red and green luminescence at room temperature, with long lifetimes of up to 0.369 ms (at 614 nm) and 0.432 ms (at 543 nm), respectively. Moreover, poor luminescence efficiency has been noted for complex 2. The 4-Hcpa ligand and complexes 1-2 have been screened for their phytogrowth-inhibitory activities against Brassica napus L. and Echinochloa crusgalli L., and the results are compared with the activity of quizalofop-P-ethyl.

  18. Biological characterization of F-18-labeled rhodamine B, a potential positron emission tomography perfusion tracer

    International Nuclear Information System (INIS)

    Introduction: Myocardial infarction is the leading cause of death in western countries, and positron emission tomography (PET) plays an increasing role in the diagnosis and treatment planning for this disease. However, the absence of an 18F-labeled PET myocardial perfusion tracer hampers the widespread use of PET in myocardial perfusion imaging (MPI). We recently reported a potential MPI agent based on 18F-labeled rhodamine B. The goal of this study was to more completely define the biological properties of 18F-labeled rhodamine B with respect to uptake and localization in an animal model of myocardial infarction and to evaluate the uptake 18F-labeled rhodamine B by cardiomyocytes. Methods: A total of 12 female Sprague Dawley rats with a permanent ligation of the left anterior descending artery (LAD) were studied with small-animal PET. The animals were injected with 100–150 μCi of 18F-labeled rhodamine B diethylene glycol ester ([18F]RhoBDEGF) and imaged two days before ligation. The animals were imaged again two to ten days post-ligation. After the post-surgery scans, the animals were euthanized and the hearts were sectioned into 1 mm slices and myocardial infarct size was determined by phosphorimaging and 2,3,5-triphenyltetrazolium chloride staining (TTC). In addition, the uptake of [18F]RhoBDEGF in isolated rat neonatal cardiomyocytes was determined by fluorescence microscopy. Results: Small-animal PET showed intense and uniform uptake of [18F]RhoBDEGF throughout the myocardium in healthy rats. After LAD ligation, well defined perfusion defects were observed in the PET images. The defect size was highly correlated with the infarct size as determined ex vivo by phosphorimaging and TTC staining. In vitro, [18F]RhoBDEGF was rapidly internalized into rat cardiomyocytes with ∼ 40 % of the initial activity internalized within the 60 min incubation time. Fluorescence microscopy clearly demonstrated localization of [18F]RhoBDEGF in the mitochondria of rat

  19. Physiochemical characterizations of hydroxyapatite extracted from bovine bones by three different methods: Extraction of biologically desirable HAp

    International Nuclear Information System (INIS)

    In the present study, subcritical water and alkaline hydrolysis methods are proposed methodologies for extraction of natural hydroxyapatite bioceramic from bovine bone. In these processes, the bovine bones powder were treated by high pressure water at 250 deg. C for 1 h and 25% (wt) sodium hydroxide at 250 deg. C for 5 h, respectively. Also the conventional calcination methodology has been utilized as well (T = 850 deg. C for 1 h). The obtained apatites from the three treatment processes have been characterized by powder X-ray diffraction analysis (XRD), Fourier transform infrared spectroscopy (FT IR), transmission electron microscopy (TEM), thermal gravimetric analysis (TGA), electron scanning microscopy (SEM), energy dispersive X-ray analysis (EDX) and field emission scanning electron microscopy (FE SEM). FT IR and XRD results affirmed that both the proposed methods and the traditional one can eliminate the collagen and other organic materials present in the bovine bones. The physiochemical characterizations for the obtained apatites have proved that the subcritical water and the alkaline hydrolysis relatively preserve the carbonate content present in the biological apatite, so they yield carbonated hydroxyapatite which is medically preferable. While, the thermal process produces almost hydroxyapatite carbonate-free

  20. Preparation, characterization and biological test of 3D-scaffolds based on chitosan, fibroin and hydroxyapatite for bone tissue engineering

    Energy Technology Data Exchange (ETDEWEB)

    Lima, Paulo Autran Leite; Resende, Cristiane Xavier [Departamento de Ciências de Materiais, Universidade Federal de Sergipe, Av. Marechal Rondon, s/n. Jardim Rosa Elze, São Cristóvão, Sergipe CEP 49000-100 (Brazil); Dulce de Almeida Soares, Glória [Departamento de Ciências de Materiais, Universidade Federal do Rio de Janeiro, Av. Brigadeiro Trompowisk, s/n. Ilha do Fundão, Rio de Janeiro, Rio de Janeiro CEP 21900-000 (Brazil); Anselme, Karine [Institut de Science des Matériaux de Mulhouse (IS2M), CNRS LRC7228, 15, Jean Starcky Street, BP 2488, 68054 Mulhouse cedex (France); Almeida, Luís Eduardo, E-mail: lealmeida2009@gmail.com [Departamento de Ciências de Materiais, Universidade Federal de Sergipe, Av. Marechal Rondon, s/n. Jardim Rosa Elze, São Cristóvão, Sergipe CEP 49000-100 (Brazil)

    2013-08-01

    This work describes the preparation and characterization of porous 3D-scaffolds based on chitosan (CHI), chitosan/silk fibroin (CHI/SF) and chitosan/silk fibroin/hydroxyapatite (CHI/SF/HA) by freeze drying. The biomaterials were characterized by X-ray diffraction, attenuated total reflection Fourier transform infrared spectroscopy, thermogravimetric analysis, differential scanning calorimetry, scanning electron microscopy and energy dispersive spectroscopy. In addition, studies of porosity, pore size, contact angle and biological response of SaOs-2osteoblastic cells were performed. The CHI scaffolds have a porosity of 94.2 ± 0.9%, which is statistically higher than the one presented by CHI/SF/HA scaffolds, 89.7 ± 2.6%. Although all scaffolds were able to promote adhesion, growth and maintenance of osteogenic differentiation of SaOs-2 cells, the new 3D-scaffold based on CHI/SF/HA showed a significantly higher cell growth at 7 days and 21 days and the level of alkaline phosphatase at 14 and 21 days was statistically superior compared to other tested materials. - Highlights: • Preparation of 3D-scaffolds based on CHI, with or without addition of SF and HA. • Scaffolds exhibited interconnected porous structure (pore size superior to 50 μm). • The tripolyphosphate did not induce any significant cytotoxic response. • The CHI/SF/HA composite showed a higher cell growth and ALP activity.

  1. Preparation, characterization and biological test of 3D-scaffolds based on chitosan, fibroin and hydroxyapatite for bone tissue engineering

    International Nuclear Information System (INIS)

    This work describes the preparation and characterization of porous 3D-scaffolds based on chitosan (CHI), chitosan/silk fibroin (CHI/SF) and chitosan/silk fibroin/hydroxyapatite (CHI/SF/HA) by freeze drying. The biomaterials were characterized by X-ray diffraction, attenuated total reflection Fourier transform infrared spectroscopy, thermogravimetric analysis, differential scanning calorimetry, scanning electron microscopy and energy dispersive spectroscopy. In addition, studies of porosity, pore size, contact angle and biological response of SaOs-2osteoblastic cells were performed. The CHI scaffolds have a porosity of 94.2 ± 0.9%, which is statistically higher than the one presented by CHI/SF/HA scaffolds, 89.7 ± 2.6%. Although all scaffolds were able to promote adhesion, growth and maintenance of osteogenic differentiation of SaOs-2 cells, the new 3D-scaffold based on CHI/SF/HA showed a significantly higher cell growth at 7 days and 21 days and the level of alkaline phosphatase at 14 and 21 days was statistically superior compared to other tested materials. - Highlights: • Preparation of 3D-scaffolds based on CHI, with or without addition of SF and HA. • Scaffolds exhibited interconnected porous structure (pore size superior to 50 μm). • The tripolyphosphate did not induce any significant cytotoxic response. • The CHI/SF/HA composite showed a higher cell growth and ALP activity

  2. Potential Amoebicidal Activity of Hydrazone Derivatives: Synthesis, Characterization, Electrochemical Behavior, Theoretical Study and Evaluation of the Biological Activity

    Directory of Open Access Journals (Sweden)

    Yanis Toledano-Magaña

    2015-05-01

    Full Text Available Four new hydrazones were synthesized by the condensation of the selected hydrazine and the appropriate nitrobenzaldehyde. A complete characterization was done employing 1H- and 13C-NMR, electrochemical techniques and theoretical studies. After the characterization and electrochemical analysis of each compound, amoebicidal activity was tested in vitro against the HM1:IMSS strain of Entamoeba histolytica. The results showed the influence of the nitrobenzene group and the hydrazone linkage on the amoebicidal activity. meta-Nitro substituted compound 2 presents a promising amoebicidal activity with an IC50 = 0.84 μM, which represents a 7-fold increase in cell growth inhibition potency with respect to metronidazole (IC50 = 6.3 μM. Compounds 1, 3, and 4 show decreased amoebicidal activity, with IC50 values of 7, 75 and 23 µM, respectively, as a function of the nitro group position on the aromatic ring. The observed differences in the biological activity could be explained not only by the redox potential of the molecules, but also by their capacity to participate in the formation of intra- and intermolecular hydrogen bonds. Redox potentials as well as the amoebicidal activity can be described with parameters obtained from the DFT analysis.

  3. Determination of Cu2+, Zn2+ and Pb2+ in biological and food samples by FAAS after preconcentration with hydroxyapatite nanorods originated from eggshell

    International Nuclear Information System (INIS)

    Hydroxyapatite nanorods (HAPNRs) were prepared from recycled eggshell by using precipitation method. The structure of the HAPNRs was physicochemically and morphologically characterized by X-ray diffraction, transmission electron microscopy and Fourier transform infrared spectroscopy. The resulting HAPNRs were used for solid phase extractive preconcentration of Cu2+, Zn2+ and Pb2+ prior to its determination by flame atomic absorption spectrometry. Experimental variables that influence the quantitative extraction of metal ions were optimized by both batch and column methods. The analytes were quantitatively sorbed on the matrix between pHs 6 and 9. The maximum sorption capacity of the HAPNRs has been found to be 2.43, 2.37 and 2.53 mmol g−1 for Cu2+, Zn2+ and Pb2+, respectively, with the preconcentration factor of 250. The 3σ detection limit and 10σ quantification limit for Cu2+, Zn2+ and Pb2+ were found to be 0.72, 0.55 and 5.12 μg L−1 and 2.40, 1.83 and 17.06 μg L−1, respectively. The calibration curves were linear up to 250 μg L−1 for Cu2+, 300 μg L−1 for Zn2+ and 400 μg L−1 for Pb2+. Accuracy of the proposed method was verified using certified reference materials (NCS ZC85006 Tomato, Seronorm Trace Elements Whole Blood L-1, Seronorm Trace Elements Whole Blood L-3 and Seronorm Trace Elements Urine). The present method was successfully applied to the analysis of these metal ions in sea water, biological and food samples. - Highlights: • Hydroxyapatite nanorods were prepared from egg shell. • The prepared nanoparticles showed fast adsorption with high adsorption capacities of the metal ions. • The nanostructures were used for solid phase extraction of copper, zinc and lead ions prior to determination by FAAS. • Accuracy of the method was validated by analyses of certified reference materials

  4. Biological and molecular characterization of a multicapsid nucleopolyhedrovirus from Thysanoplusia orichalcea (L.) (Lepidoptera: Noctuidae).

    Science.gov (United States)

    Cheng, Xiao-Wen; Carner, Gerald R; Lange, Martin; Jehle, Johannes A; Arif, Basil M

    2005-02-01

    A multicapsid nucleopolyhedrovirus (ThorMNPV) that was co-isolated with a single nucleocapid ThorSNPV from mixed infected larvae of Thysanoplusia orichalcea L. (Lepidoptea: Noctuidae) is characterized. Scanning electron microscopy of ThorMNPV showed a dodecahedral-shaped occlusion body (OB). The occluded virions contained one to as many as eight nucleocapsids/virion. Virion band profiles in gradient centrifugation were consistent in at least 10 rounds of centrifugation from different virion sample preparations. The ThorMNPV had high virulence to third instar Trichoplusia ni and Pseudoplusia includens with LD50 values of 17 and 242OBs per larva, respectively. However, ThorMNPV did not cause mortality in Spodoptera exigua, Spodoptera frugiperda, Spodoptera eridania, Anticarsia gemmatalis, and Helicoverpa zea. ThorMNPV replicates in cells of various tissues such as the fat body and tracheal epithelium cells. T. ni High 5 cells were permissive to ThorMNPV in terms of infection and viral DNA transfection, but SF-21 was less permissive and the infection process was slower. Production of OBs by ThorMNPV in the nuclei of SF-21 was not well pronounced. The genome size of ThorMNPV was estimated to be 136 kb. The polyhedrin gene open reading frame (ORF) was cloned and completely sequenced. The promoter sequence is identical to that of Autographa californica MNPV. Phylogenetic analyses using partial sequences of the polh, lef-8, and lef-9 revealed that ThorMNPV is a member of the Group I NPVs and is related but distinct from the AcMNPV/Rachiplusia ou NPV/Bombyx mori NPV cluster. PMID:15766929

  5. Characterization of Arcanobacterium haemolyticum isolates originating from pneumonic piglets, the first isolates from piglet lungs in Yugoslavia

    OpenAIRE

    Suvajdžić Ljiijana; Ašanin Ružica; Knežević N.; Košarčić Slavica

    2002-01-01

    Arcanobacterium haemolyticum is rarely isolated from clinical),material either in human or veterinary medicine. As for our country, there is only one official report with regard to the isolation of A. haemolyticum from material of animal origin. Pathologically altered parts of the lungs from piglets with pneumonic symptoms, were streaked aerobically and microaerophilically and the suspect colonies were tested with a double CAMP test. The positive inverse CAMP with Staphylococcus aureus and sy...

  6. Biological test methods for the ecotoxicological characterization of wastes. Final report; Biologische Testerverfahren zur oekotoxikologischen Charakterisierung von Abfaellen. Abschlussbericht

    Energy Technology Data Exchange (ETDEWEB)

    Becker, Roland [Bundesanstalt fuer Materialforschung, Berlin (Germany); Donnevert, Gerhild [Fachhochschule Giessen-Friedberg (Germany). FB MNI; Roembke, Joerg [ECT Oekotoxikologie GmbH, Floersheim am Main (Germany)

    2007-11-15

    The ecotoxicological characterization of waste is part of their assessment as hazardous or non-hazardous according to the European Waste List. Despite its transfer into national law in the waste list ordnance 2001 no methodological recommendations have been provided to cover the hazard criterion (H14 ''ecotoxicity'') which was taken over from the legislation on dangerous substances. Based on the recommendations of CEN guideline 14735 (2005), an international ring test was organised by BAM, FH Giessen-Friedberg and ECT GmbH. In total, 67 laboratories from 15 countries participated in the ring test. It was performed with three representative waste types: an ash from an incineration plant mainly contaminated with heavy metals, a soil containing high concentrations of organic contaminants (PAHs) and a preserved wood waste contaminated with copper and other heavy metals. Samples were prepared by BAM (e.g. inter alia dried, sieved and homogenised) and distributed. Parallel to the biological testing the eluates and solid samples were chemically characterized. The basic test battery used in the ring test consisted of three aquatic (Algae test, Daphnia acute test and Microtox test) and three terrestrial (earthworm acute and plant test with two species (oat, rape)) tests. In addition, data were submitted for ten additional tests (five aquatic (including a genotoxicity test) and five terrestrial ones). Almost all tests were performed according to ISO guidelines, providing EC50 values as measurement of toxicity. Data evaluation was done following recent recommendations made by ISO (2002) and Environment Canada (2005). Besides a high number of reference test data, 634 data sets were produced in the basic test battery and 204 data sets in the additional tests. Only few data sets were not acceptable (e.g. due to lack of reference data) and even less results were identified as statistical or biological outliers. For example, in the case of the basic test

  7. Integrated Surface and Mechanical Characterization of Freestanding Biological and Other Nano-Structures Using Atomic Force Microscopy

    Science.gov (United States)

    Wang, Xin

    This dissertation is focused on surface and mechanical characterization of freestanding biological and other nano-structures using atomic force microscopy including two parts: cell mechanics and nano-structure mechanics. The main purpose of this work is to investigate how the nano- / micro-scale mechanical properties affect macro-scale function. In cancer cells, efficacy of drug delivery is oftentimes declined due to the thick dendritic network of oligosaccharide mucin chains on the cell surface. AFM is used to measure the force needed to pierce the mucin layer to reach the cell surface. A pool of ovarian, pancreatic, lung, colorectal and breast cancer cells are characterized. The studies offer additional support for the development of clinical and pharmaceutical approaches to combat mucin over-expression in tumors during cancer chemotherapy. Macroscopic adhesion-aggregation and subsequent transportation of microorganisms in porous medium are closely related to the microscopic deformation and adhesion mechanical properties. The classical Tabor's parameter is modified. Multiple bacterial strains are characterized in terms of aggregates size, aggregation index and transportation kinetics. AFM is employed to obtain the microscopic coupled adhesion-deformation properties. The strong correlation between Tabor's parameter and aggregation-deposition-transportation suggests the AFM characterization is capable of making reliable predication of macroscopic behavior. A novel "nano-cheese-cutter" is fabricated on tipless AFM cantilever to measure elastic modulus and interfacial adhesion of a 1-D freestanding nano-structure. A single electrospun fiber is attached to the free end of AFM cantilever, while another fiber is similarly prepared on a mica substrate in an orthogonal direction. An external load is applied to deform the two fibers into complementary V-shapes. This work is extended to investigate the interfacial adhesion energy between dissimilar materials. SWCNT thin

  8. Enhanced biological phosphorus removal. Carbon sources, nitrate as electron acceptor, and characterization of the sludge community

    Energy Technology Data Exchange (ETDEWEB)

    Christensson, M.

    1997-10-01

    Enhanced biological phosphorus removal (EBPR) was studied in laboratory scale experiments as well as in a full scale EBPR process. The studies were focused on carbon source transformations, the use of nitrate as an electron acceptor and characterisation of the microflora. A continuous anaerobic/aerobic laboratory system was operated on synthetic wastewater with acetate as sole carbon source. An efficient EBPR was obtained and mass balances over the anaerobic reactor showed a production of 1.45 g poly-{beta}-hydroxyalcanoic acids (PHA), measured as chemical oxygen demand (COD), per g of acetic acid (as COD) taken up. Furthermore, phosphate was released in the anaerobic reactor in a ratio of 0.33 g phosphorus (P) per g PHA (COD) formed and 0.64 g of glycogen (COD) was consumed per g of acetic acid (COD) taken up. Microscopic investigations revealed a high amount of polyphosphate accumulating organisms (PAO) in the sludge. Isolation and characterisation of bacteria indicated Acinetobacter spp. to be abundant in the sludge, while sequencing of clones obtained in a 16S rDNA clone library showed a large part of the bacteria to be related to the high mole % G+C Gram-positive bacteria and only a minor fraction to be related to the gamma-subclass of proteobacteria to which Acinetobacter belongs. Operation of a similar anaerobic/aerobic laboratory system with ethanol as sole carbon source showed that a high EBPR can be achieved with this compound as carbon source. However, a prolonged detention time in the anaerobic reactor was required. PHA were produced in the anaerobic reactor in an amount of 1.24 g COD per g of soluble DOC taken up, phosphate was released in an amount of 0.4-0.6 g P per g PHA (COD) produced and 0.46 g glycogen (COD) was consumed per g of soluble COD taken up. Studies of the EBPR in the UCT process at the sewage treatment plant in Helsingborg, Sweden, showed the amount of volatile fatty acids (VFA) available to the PAO in the anaerobic stage to be

  9. Method development for mass spectrometry based molecular characterization of fossil fuels and biological samples

    Science.gov (United States)

    Mahat, Rajendra K.

    In an analytical (chemical) method development process, the sample preparation step usually determines the throughput and overall success of the analysis. Both targeted and non-targeted methods were developed for the mass spectrometry (MS) based analyses of fossil fuels (coal) and lipidomic analyses of a unique micro-organism, Gemmata obscuriglobus. In the non-targeted coal analysis using GC-MS, a microwave-assisted pressurized sample extraction method was compared with the traditional extraction method, such as Soxhlet. On the other hand, methods were developed to establish a comprehensive lipidomic profile and to confirm the presence of endotoxins (a.k.a. lipopolysaccharides, LPS) in Gemmata.. The performance of pressurized heating techniques employing hot-air oven and microwave irradiation were compared with that of Soxhlet method in terms of percentage extraction efficiency and extracted analyte profiles (via GC-MS). Sub-bituminous (Powder River Range, Wyoming, USA) and bituminous (Fruitland formation, Colorado, USA) coal samples were tested. Overall 30-40% higher extraction efficiencies (by weight) were obtained with a 4 hour hot-air oven and a 20 min microwave-heating extraction in a pressurized container when compared to a 72 hour Soxhlet extraction. The pressurized methods are 25 times more economic in terms of solvent/sample amount used and are 216 times faster in term of time invested for the extraction process. Additionally, same sets of compounds were identified by GC-MS for all the extraction methods used: n-alkanes and diterpanes in the sub-bituminous sample, and n-alkanes and alkyl aromatic compounds in the bituminous coal sample. G. obscuriglobus, a nucleated bacterium, is a micro-organism of high significances from evolutionary, cell and environmental biology standpoints. Although lipidomics is an essential tool in microbiological systematics and chemotaxonomy, complete lipid profile of this bacterium is still lacking. In addition, the presence of

  10. Separation, Characterization and Fouling Potential of Sludge Waters from Different Biological Wastewater Treatment Processes

    KAUST Repository

    Xue, Jinkai

    2011-07-01

    The major limitation, which hinders the wider application of membrane technology and increases the operating costs of membranes involved in wastewater treatment plants, is membrane fouling induced by organic matter. Extracellular polymeric products (EPS) and soluble microbial products (SMP) are the two most mentioned major foulants in publications, for which the debate on precise definitions seems to be endless. Therefore, a concept of sludge water, which conceptually covers both EPS and SMP, has been developed in this research. A standard procedure of sludge water separation, which is centrifugation at 4000g for 15 min followed by 1.2μm glass fiber filter filtration, was established based on separation experiments with membrane tank sludge from the KAUST MBR wastewater treatment plant. Afterwards, sludge waters from the KAUST MBR WWTP anoxic tank, aerobic tank and membrane tank as well as sludge waters from the Jeddah WWTP anoxic tank, aerobic tank and secondary effluent were produced through the previously developed standard procedure. The obtained sludge water samples were thereafter characterized with TOC/COD, LC-­‐OCD and F-­‐EEM, which showed that KAUST anoxic/ aerobic /membrane tank sludge waters had similar characteristics for all investigated parameters, yet the influent naturally had a higher DOC and biopolymer concentration. Moreover, lower TOC/COD, negligible biopolymers and low levels of humics were found in KAUST effluent. Compared with the KAUST MBR WWTP, the Jeddah WWTP’s sludge waters generally had higher DOC and biopolymer concentrations. To investigate sludge water fouling potential, the KAUST membrane tank sludge water as well as the Jeddah secondary effluent were filtrated through a membrane array consisting of an ultrafiltration (UF) Millipore RC10kDa at the first step followed by a nanofiltration (NF) KOCH Acid/Base stable NF200 at the second step. It was found that cake layer and standard blocking occurred simultaneously during both

  11. Synthesis, Characterization and Biological Studies of New Phenyltin(IV) Dithiocarbamate Compounds

    International Nuclear Information System (INIS)

    Nine chlorophenyl tin(IV) dithiocarbamate compounds of general formula PhSnCl[S2CNR'R'']2 (R' = CH3, C2H5, C7H7 and R' = C2H5, C6H11, iC3H7, C7H7) were prepared in one pot reaction of various secondary amine, carbon disulphide and phenyltin(1V) trichloride with the ratio of 2:2:1. These compounds have been characterized by elemental analysis, infrared spectroscopy, ultraviolet spectroscopy, 1H, 13C NMR spectroscopy as well as single crystal X-ray crystallography. Data from X-ray crystallography showed that (C6H5)SnCl[S2CN(C2H5)(iC3H7)]2 is six coordinated bonded with two chelating dithiocarbamate ligands in bidentate fashion, methyl-C and chloride atom thus form a distorted octahedral geometry. Five selected compounds, (C6H5)SnCl[S2CN(CH3)(C2H5)]2, (C6H5)SnCl[S2CN(CH3)(C6H11)]2, (C6H5)SnCl[S2CN(C2H5)(iC3H7)]2, (C6H5)SnCl[S2CN(C7H7)(iC3H7)]2 and (C6H5)SnCl[S2CN(C7H7)2]2 were screened for anticancer activity against Chang liver cells. These compounds were demonstrated no cytotoxic effect for all concentrations under the condition of the study with no IC50 value. The minimum inhibitory concentration (MIC) and maximum bactericidal concentration (MBC) determinations for these five compounds used Escherichia coli and Pseudomonas aeruginosa as Gram negative bacteria together with Staphylococcus aureus and Staphylococcus epidermis as Gram positive bacteria. Compound (C6H5)SnCl[S2CN(CH3)(C2H5)]2 was the most active compared to the other compounds by having the lowest MIC values of 1.25 mg/ mL and MBC value of 5.0 mg/ mL against E. Coli and S. Aureus bacteria. Compounds (C6H5)SnCl[S2CN(C7H7)(iC3H7)]2 and (C6H5)SnCl[S2CN(C7H7)2]2 that having a benzyl group showed their MIC and MBC values slightly higher compared to the other compounds againts certain bacteria indicating their low antibacterial activities. (author)

  12. Characterization of PicoGreen Interaction with dsDNA and the Origin of Its Fluorescence Enhancement upon Binding

    OpenAIRE

    Dragan, A.I.; Casas-Finet, J R; Bishop, E.S.; Strouse, R J; Schenerman, M A; Geddes, C.D.

    2010-01-01

    PicoGreen is a fluorescent probe that binds dsDNA and forms a highly luminescent complex when compared to the free dye in solution. This unique probe is widely used in DNA quantitation assays but has limited application in biophysical analysis of DNA and DNA-protein systems due to limited knowledge pertaining to its physical properties and characteristics of DNA binding. Here we have investigated PicoGreen binding to DNA to reveal the origin and mode of PicoGreen/DNA interactions, in particul...

  13. Physicochemical and biological characterization of long-term operated sulfate reducing granular sludge in the SANI® process.

    Science.gov (United States)

    Hao, Tianwei; Luo, Jinghai; Wei, Li; Mackey, Hamish R; Liu, Rulong; Rey Morito, Guillermo; Chen, Guang-Hao

    2015-03-15

    The SANI(®) process (Sulfate reduction, Autotrophic denitrification and Nitrification Integrated) is a treatment system with low energy demands. The major bioreactor of this new technology is a sulfate-reducing up-flow sludge bed (SRUSB) that converts organics and provides electron donors for subsequent autotrophic denitrification. This research characterizes the granules inside the SRUSB, with the aim of improving its efficiency, maximizing its operational flexibility, and minimizing its footprint. The unique sulfate-reducing bacteria (SRB) granules serving in the SRUSB were found to increase the resilience and compactness of the SRUSB. The granules, with a compact and porous structure, showed high cohesion resisting breakage with a shear force G > 3400 s(-1). The hydrophobicity of the external surface of the mature granules remained stable at around 70% and acid volatile sulfide (AVS) accumulated at the bottom of the SRUSB. 16s rRNA gene analysis of the microbial communities revealed that Desulfobulbus (42.1%), Prosthecochloris (19%) and Trichococcus (12%) dominated the mature granular sludge. Fluorescence in situ hybridization (FISH) further showed that SRB organisms were located internally and then surrounded by non-SRB. According to the FISH results, the spatial distribution of extracellular polymeric substances (EPS) displayed protein and α-polysaccharides in the exterior and β-polysaccharide in the core of the granules. Such biological structure suggests that each SRB granule acts as an efficient and independent unit, capable of achieving both fermentation and organic conversion. The present investigation sheds light on the physicochemical and biological characteristics of the SRB granulate. This information provides valuable information for scaling-up the SANI(®) process to treat real saline sewage in Hong Kong. PMID:25600299

  14. Study and characterization of ceramic materials from natural origin for application in jewellery design using laser texturing as innovation

    International Nuclear Information System (INIS)

    Technological development has been largely responsible for changes in the jewelry market. Seeking to contribute to the development of new products, this study analyzed the technique of laser texturing, aiming to add commercial and aesthetic values to the mother of pearl, material used in the jewelry field. The methodology was divided into physico-chemical characterization of the mother-of-pearl and of the resulting residue of laser texturing and analysis of the interaction of laser with the surface of the mother-of-pearl. The characterizations carried out were: Infrared spectroscopy, X-ray diffraction, thermogravimetric analysis and scanning electron microscopy. Results indicate that the studied material is composed mainly by the aragonite crystal phase, different from that resulting residue from texturing process. Although the process remove some of the gem material, the effect water characteristic of the mother-of-pearl is maintained, suggesting that technology combined with research and design can increase the value of this material. (author)

  15. Data fusion between high resolution (1)H-NMR and mass spectrometry: a synergetic approach to honey botanical origin characterization.

    Science.gov (United States)

    Spiteri, Marc; Dubin, Elodie; Cotton, Jérôme; Poirel, Marion; Corman, Bruno; Jamin, Eric; Lees, Michèle; Rutledge, Douglas

    2016-06-01

    A data fusion approach was applied to a commercial honey data set analysed by (1)H-nuclear magnetic resonance (NMR) 400 MHz and liquid chromatography-high resolution mass spectrometry (LC-HRMS). The latter was performed using two types of mass spectrometers: an Orbitrap-MS and a time of flight (TOF)-MS. Fifty-six honey samples from four monofloral origins (acacia, orange blossom, lavender and eucalyptus) and multifloral sources from various geographical origins were analysed using the three instruments. The discriminating power of the results was examined by PCA first considering each technique separately, and then combining NMR and LC-HRMS together with or without variable selection. It was shown that the discriminating potential is increased through the data fusion, allowing for a better separation of eucalyptus, orange blossom and lavender. The NMR-Orbitrap-MS and NMR-TOF-MS mid-level fusion models with variable selection were preferred as a good discrimination was obtained with no misclassification observed for the latter. This study opens the path to new comprehensive food profiling approaches combining more than one technique in order to benefit from the advantages of several technologies. Graphical Abstract Data fusion between high resolution 1H-NMR and mass spectrometry. PMID:27086012

  16. Characterization of volatiles in Beaten cheeses (bieno sirenje) by SPME/GC-MC: Influence of geographical origin

    OpenAIRE

    Sulejmani Erhan; Rafajlovska Vesna; Guneser Onur

    2014-01-01

    In this study, the volatile profiles of a type of economically important cheeses for the FYR Macedonian dairy sector were characterized. A total of eighteen samples belonged to 6 different geographical regions of Beaten cheese, including cheeses from Kumanovo, Tetovo, Struga, Resen, Veles and Radovish were comparatively studied for their volatile profiles. Sixty two volatile compounds were identified in the cheeses by solid-phase microextraction combined wi...

  17. Characterization of U/Pu particles originating from the nuclear weapons accidents at Palomares, Spain, 1966 and Thule, Greenland, 1968

    OpenAIRE

    Lind, O. C.; Salbu, B.; Janssens, K.; Proost, K.; Garcia-Leon, M.; R. Garcia-Tenorio

    2007-01-01

    Following the USAF B-52 bomber accidents at Palomares, Spain in 1966 and at Thule, Greenland in 1968, radioactive particles containing uranium (U) and plutonium (Pu) were dispersed into the environment. To improve long-term environmental impact assessments for the contaminated ecosystems, particles from the two sites have been isolated and characterized with respect to properties influencing particle weathering rates. Low (239)Pu/(235)U (0.62-0.78) and (240)Pu/(239)Pu (0.055-0.061) atom ratio...

  18. Chemical Origins of Life

    Science.gov (United States)

    Fox, J. Lawrence

    1972-01-01

    Reviews ideas and evidence bearing on the origin of life. Shows that evidence to support modifications of Oparin's theories of the origin of biological constituents from inorganic materials is accumulating, and that the necessary components are readily obtained from the simple gases found in the universe. (AL)

  19. Synthesis characterization and biological evaluation of a novel mixed ligand 99mTc complex as potential brain imaging agent

    International Nuclear Information System (INIS)

    One approach in the design of neutral oxotechnetium complexes is based on the simultaneous substitution of a tridentate dianionic ligand and a monodentate monoanionic coligand on a [Tc(V)O]+3 precursor. Following this ''mixed ligand'' concept, a novel 99mTc complex with N,N-bis(2-mercaptoethyl)-N'N'-diethylethylenediamine as ligand and 1-octanethiol as coligand is prepared and evaluated as potential brain radiopharmaceutical. Preparation of the complex at tracer level was accomplished by using 99mTc-glucoheptonate as precursor. The substitution was optimized and a coligand/ligand ratio of 5 was selected. Under this conditions the labeling yield was over 80% and a major product (with radiochemical purity > 80%) was isolated by HPLC methods and used for biological evaluation. Chemical characterization at carrier level was developed using the corresponding rhenium complex as structural model. The Re complex was also prepared by substitution method and isolated as a crystalline product. The crystals were characterized by UV-vis and IR spectra and elemental analysis. Results were consistent with the expected ReOLC structure. X ray crystallographic study demonstrated that the complex adopts a distorted trigonal bipyramidal geometry. The basal plane is defined by the SS atoms of the ligand and the oxo group, while the N of the ligand and the S of the colligand occupy the two apical positions. All sulphur atoms underwent ionization leading to the formation of a neutral compound. 99Tc complex was also prepared. Although it was not isolated due to the small amount of reagents employed, the HPLC profile was identical to the one observed for the rhenium complex suggesting the same chemical structure. Biodistribution in mice demonstrated early brain uptake, fast blood clearance, excretion through hepatobiliary system and a brain/blood ratio that increased significantly with time. (author)

  20. Origin of structure: Statistical characterization of the primordial density fluctuations and the collapse of the wave function

    CERN Document Server

    Leon, Gabriel

    2015-01-01

    The statistical properties of the primordial density perturbations has been considered in the past decade as a powerful probe of the physical processes taking place in the early universe. Within the inflationary paradigm, the properties of the bispectrum are one of the keys that serves to discriminate among competing scenarios concerning the details of the origin of cosmological perturbations. However, all of the scenarios, based on the conventional approach to the so-called "quantum-to-classical transition" during inflation, lack the ability to point out the precise physical mechanism responsible for generating the inhomogeneity and anisotropy of our universe starting from and exactly homogeneous and isotropic vacuum state associated with the early inflationary regime. In past works, we have shown that the proposals involving a spontaneous dynamical reduction of the quantum state provide plausible explanations for the birth of said primordial inhomogeneities and anisotropies. In the present manuscript we sho...

  1. The Origin of Carbon-Bearing Volatiles in a Continental Hydrothermal System in the Great Basin: Water Chemistry and Isotope Characterizations

    Science.gov (United States)

    Fu, Qi; Socki, Richard A.; Niles, Paul B.; Romanek, Christopher; Datta, Saugata; Darnell, Mike

    2012-01-01

    Hydrothermal systems on Earth are active centers in the crust where organic molecules can be synthesized biotically or abiotically under a wide range of physical and chemical conditions [1-3]. Not only are volatile species (CO, CO2, H2, and hydrocarbons) a reflection of deep-seated hydrothermal alteration processes, but they also form an important component of biological systems. Studying carbon-bearing fluids from hydrothermal systems is of specific importance to understanding (bio-)geochemical processes within these systems. With recent detection of methane in the martian atmosphere [4-7] and the possibility of its hydrothermal origin [8, 9], understanding the formation mechanisms of methane may provide constraints on the history of the martian aqueous environments and climate.

  2. Size-Resolved Identification, Characterization, and Quantification of Primary Biological Organic Aerosol at a European Rural Site.

    Science.gov (United States)

    Bozzetti, Carlo; Daellenbach, Kaspar R; Hueglin, Christoph; Fermo, Paola; Sciare, Jean; Kasper-Giebl, Anneliese; Mazar, Yinon; Abbaszade, Gülcin; El Kazzi, Mario; Gonzalez, Raquel; Shuster-Meiseles, Timor; Flasch, Mira; Wolf, Robert; Křepelová, Adéla; Canonaco, Francesco; Schnelle-Kreis, Jürgen; Slowik, Jay G; Zimmermann, Ralf; Rudich, Yinon; Baltensperger, Urs; El Haddad, Imad; Prévôt, André S H

    2016-04-01

    Primary biological organic aerosols (PBOA) represent a major component of the coarse organic matter (OMCOARSE, aerodynamic diameter > 2.5 μm). Although this fraction affects human health and the climate, its quantification and chemical characterization currently remain elusive. We present the first quantification of the entire PBOACOARSE mass and its main sources by analyzing size-segregated filter samples collected during the summer and winter at the rural site of Payerne (Switzerland), representing a continental Europe background environment. The size-segregated water-soluble OM was analyzed by a newly developed offline aerosol mass spectrometric technique (AMS). Collected spectra were analyzed by three-dimensional positive matrix factorization (3D-PMF), showing that PBOA represented the main OMCOARSE source during summer and its contribution to PM10 was comparable to that of secondary organic aerosol. We found substantial cellulose contributions to OMCOARSE, which in combination with gas chromatography mass spectrometry molecular markers quantification, underlined the predominance of plant debris. Quantitative polymerase chain reaction (qPCR) analysis instead revealed that the sum of bacterial and fungal spores mass represented only a minor OMCOARSE fraction (<0.1%). X-ray photoelectron spectroscopic (XPS) analysis of C and N binding energies throughout the size fractions revealed an organic N increase in the PM10 compared to PM1 consistent with AMS observations. PMID:26900965

  3. Characterization of a multiculture in-vitro cell exposure chamber for assessing the biological impact of diesel engine exhaust

    International Nuclear Information System (INIS)

    In order to study the various health influencing parameters related to particulate as well as to gas-phase pollutants emitted by Diesel engine exhaust, there is an urgent need for appropriate sampling devices and methods for cell exposure studies and associated biological and toxicological tests. In a previous paper [1], a specific concept for a cell culture exposure chamber was introduced to allow the uniform exposure of cell cultures to diesel aerosols. In the present work, this cell culture exposure chamber is evaluated and characterized with state-of-the-art nanoparticles measurement instrumentation to assess the local deposition of soot aggregates on the cell cultures and any losses due to particle deposition on the cell culture exposure chamber walls, and in addition an upgraded Multiculture Exposure Chamber (MEC) for in vitro continuous flow cell exposure tests is introduced with improved, compared to the previous version, features. Analysis and design of the MEC employs CFD and true to geometry representations of soot particle aggregates.

  4. Characterization and in vitro biological evaluation of mineral/osteogenic growth peptide nanocomposites synthesized biomimetically on titanium

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Cen; Kong, Xiangdong [Bio-X Center, College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018 (China); Zhang, Sheng-Min [Advanced Biomaterials and Tissue Engineering Center, Huazhong University of Science and Technology, Wuhan 430074 (China); Lee, In-Seop, E-mail: inseop@yonsei.ac.kr [Bio-X Center, College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018 (China); Institute of Natural Sciences, Yonsei University, Seoul 120-749 (Korea, Republic of)

    2015-04-15

    Graphical abstract: - Highlights: • Mineral/OGP nanocomposite layers were synthesized biomimetically on Ti substrates. • Incorporated OGP affected the morphology and ultimate structure of mineral. • Incorporated OGP improved the MSCs adhesion, proliferation, and ALP activity. - Abstract: Nanocomposite layers of mineral/osteogenic growth peptide (OGP) were synthesized on calcium phosphate coated titanium substrates by immersing in calcium-phosphate buffer solution containing OGP. Peptide incorporated mineral was characterized by determining quantity loaded, effects on mineral morphology and structure. Also, the biological activity was investigated by cell adhesion, proliferation assay, and measurement of alkaline phosphatase (ALP) activity. X-ray photoelectron spectroscopy (XPS) and micro-bicinchoninic acid (BCA) assay revealed that OGP was successfully incorporated with mineral and the amount was increased with immersion time. Incorporated OGP changed the mineral morphology from sharp plate-like shape to more rounded one, and the octacalcium phosphate structure of the mineral was gradually transformed into apatite. With confocal microscopy to examine the incorporation of fluorescently labeled peptide, OGP was evenly distributed throughout mineral layers. Mineral/OGP nanocomposites promoted cell adhesion and proliferation, and also increased ALP activity of mesenchymal stem cells (MSCs). Results presented here indicated that the mineral/OGP nanocomposites formed on titanium substrates had the potential for applications in dental implants.

  5. Biological characterization of a novel and potent gonadotropin releasing hormone (GnRH) antagonist LXT-101

    Institute of Scientific and Technical Information of China (English)

    Xiao-liCHI; Wen-xiaZHOU; Jun-pingCHENG; Yong-xiangZHANG; Ke-liangLIU

    2005-01-01

    AIM The biological characterization of LXT-101 was investigated in vivo using intact male rats and nude mice bearing xenografts of LNCaP prostate cancer. The effect of LXT-101 on the proliferation of androgen -sensitive prostate cancer cell LNCaP and androgen-insensitive DU145 and PC-3M in vitro was also determined. METHODS Rats were injected subcutaneously with LXT-101 while control animals received only vehicle (5% mannitol). Blood samples were collected at different time after adminis-tration of LXT-101. The androgen-dependent LNCaP prostate cancer cells were grown, mixed with Matrigel and injected subcutaneously into nude mice. Experimental group received LXT-101 injectionfor up to 4 weeks. At the end point, blood samples were drawn and the excised tumors and sex organswere weighted. The serum testosterone was determined by specific immunochemiluminescence assay using kits produced by Beckman-Counter Co. The mRNA expressions of the genes of hormone receptor related to the gonadal axis were investigated by real-time RT-PCR technique. Cell viability was determined by MTT method.

  6. Synthesis, structural characterization and biological activity of a trinuclear zinc(II) complex: DNA interaction study and antimicrobial activity

    Indian Academy of Sciences (India)

    Bhaskar Biswas; Niranjan Kole; Moumita Patra; Shampa Dutta; Mousumi Ganguly

    2013-11-01

    A trinuclear zinc(II) complex [Zn3L2(-O2CCH3)2(H2O)2]·H2O·2CH3OH (1) was synthesized from an in situ reaction between zinc acetate and a Schiff base ligand (H2L = 2-((2-hydroxyphenylimino) methyl)-6-methoxyphenol). The ligand was prepared by (1:1) condensation of ortho-vanillin and ortho-aminophenol. The ligand and zinc(II) complex were characterized by elemental analysis, Fourier Transform Infrared (FTIR), 1H-Nuclear Magnetic Resonance (NMR), UV-Vis spectroscopy, Powder X-ray Diffraction (PXRD) and thermogravimetric analysis. 1 crystallizes in P-1 space group with = 11.9241(3) Å, = 12.19746 Å, = 20.47784 Å with unit cell volume is 2674.440 (Å)3. Binding property of the complex with calf thymus DNA (CT-DNA) has been investigated using absorption and emission studies. Thermal melting and viscosity experiments were further performed to determine the mode of binding of 1 with CT-DNA. Spectroscopic and viscosity investigations revealed an intercalative binding mode of 1 with CT-DNA. The ligand and its zinc complex were screened for their biological activity against bacterial species and fungi. Activity data show that the metal complex has more antibacterial and antifungal activity than the parent Schiff base ligand and against those bacterial or fungi species.

  7. Copper(II) and nickel(II) complexes of benzyloxybenzaldehyde-4-phenyl-3-thiosemicarbazone: Synthesis, characterization and biological activity

    Science.gov (United States)

    Prathima, B.; Subba Rao, Y.; Adinarayana Reddy, S.; Reddy, Y. P.; Varada Reddy, A.

    2010-09-01

    Benzyloxybenzaldehyde-4-phenyl-3-thiosemicarbazone ligand (L) has been synthesized from benzyloxybenzaldehyde and 4-phenyl-3-thiosemicarbazide. Complexes of this ligand with chlorides of Cu(II) and Ni(II) have been prepared. The structure of the ligand (L) is proposed based on elemental analysis, IR and 1H NMR spectra. Its complexes with Cu(II) and Ni(II) ions are characterized from the studies of electronic as well as EPR spectra. On the basis of electronic and EPR studies, rhombically distorted octahedral structure has been proposed for Cu(II) complex while the Ni(II) complex has been found to acquire an octahedral structure. The ligand and their metal complexes have been tested in vitro for their biological effects. Their antibacterial activities against Gram-negative bacteria ( Escherichia coli and Klebsiella pneumoniae) and Gram-positive bacteria ( Staphylococcus aureus and Bacillus subtilis) have been investigated. The prepared metal complexes exhibit higher antibacterial activities than the parent ligand. The in vitro antioxidant activity of free ligand and its metal(II) complexes have also been investigated and the results however reveal that the ligand exhibits greater antioxidant activity than its complexes.

  8. Synthesis, structural characterization and biological activities of organotin(IV) complexes with 5-allyl-2-hydroxy-3-methoxybenzaldehyde-4-thiosemicarbazone

    Indian Academy of Sciences (India)

    Rosenani A Haque; M A Salam

    2015-09-01

    The organotin(IV) complexes [MeSnCl(L)] (2), [BuSnCl(L)] (3), [PhSnCl(L)] (4) and [Me2Sn(L)] (5) were synthesized by reacting organotin(IV) chloride(s) with 5-allyl-2-hydroxy-3-methoxybenzaldehyde- 4-thiosemicarbazone [H2L], (1)] in presence of KOH in 1:2:1 molar ratio (metal salt: base:ligand). All the complexes have been characterized by elemental analyses, UV-Vis, FT-IR, 1H, 13C and 119Sn NMR spectral studies. The molecular structure of complex 5 has been confirmed by single crystal X-ray diffraction analysis. The ligand, H2L coordinates to Sn(IV) in thiolate form through phenoxide-O, azomethine-N and thiolate-S atoms. The C-Sn-C angle measured from coupling constant 1 (119Sn, 13C) for dimethyltin(IV) complex 5 is 123.4°. The 2 (119Sn, 1H) coupling constant values for complex 2 and 5 are 72.4 and 76.3 Hz, respectively. Proposed geometry for five coordinated Sn(IV) atom is a strongly distorted trigonal bipyramid. Biological studies were preformed in vitro against four bacterial strains which have shown better activities and potential as antibacterial agents.

  9. Characterization of sulfide-oxidizing microbial mats developed inside a full-scale anaerobic digester employing biological desulfurization.

    Science.gov (United States)

    Kobayashi, Takuro; Li, Yu-You; Kubota, Kengo; Harada, Hideki; Maeda, Takeki; Yu, Han-Qing

    2012-01-01

    The microbial mats responsible for biological desulfurization from biogas in a full-scale anaerobic digester were characterized in terms of their structure, as well as their chemical and microbial properties. Filament-shaped elemental sulfur 100-500 μm in length was shown to cover the mats, which cover the entire headspace of the digester. This is the first report on filamentous sulfur production in a non-marine environment. The results of the analysis of the mats suggest that the key players in the sulfide oxidation and sulfur production in the bio-desulfurization in the headspace of the digester were likely to be two sulfide-oxidizing bacteria (SOB) species related to Halothiobacillus neapolitanus and Sulfurimonas denitrificans, and that the microbial community, cell density, activity for sulfide oxidation varied according to the environmental conditions at the various locations of the mats. Since the water and nutrients necessary for the SOB were provided by the digested sludge droplets deposited on the mats, and our results show that a higher rate of sulfide oxidation occurred with more frequent digested sludge deposition, the habitat of the SOB needs to be made in the lower part of the headspace near the liquid level of the digested sludge to maintain optimal conditions. PMID:21735263

  10. Characterization and in vitro biological evaluation of mineral/osteogenic growth peptide nanocomposites synthesized biomimetically on titanium

    International Nuclear Information System (INIS)

    Graphical abstract: - Highlights: • Mineral/OGP nanocomposite layers were synthesized biomimetically on Ti substrates. • Incorporated OGP affected the morphology and ultimate structure of mineral. • Incorporated OGP improved the MSCs adhesion, proliferation, and ALP activity. - Abstract: Nanocomposite layers of mineral/osteogenic growth peptide (OGP) were synthesized on calcium phosphate coated titanium substrates by immersing in calcium-phosphate buffer solution containing OGP. Peptide incorporated mineral was characterized by determining quantity loaded, effects on mineral morphology and structure. Also, the biological activity was investigated by cell adhesion, proliferation assay, and measurement of alkaline phosphatase (ALP) activity. X-ray photoelectron spectroscopy (XPS) and micro-bicinchoninic acid (BCA) assay revealed that OGP was successfully incorporated with mineral and the amount was increased with immersion time. Incorporated OGP changed the mineral morphology from sharp plate-like shape to more rounded one, and the octacalcium phosphate structure of the mineral was gradually transformed into apatite. With confocal microscopy to examine the incorporation of fluorescently labeled peptide, OGP was evenly distributed throughout mineral layers. Mineral/OGP nanocomposites promoted cell adhesion and proliferation, and also increased ALP activity of mesenchymal stem cells (MSCs). Results presented here indicated that the mineral/OGP nanocomposites formed on titanium substrates had the potential for applications in dental implants

  11. Rational design, biophysical and biological characterization of site-specific antibody-tubulysin conjugates with improved stability, efficacy and pharmacokinetics.

    Science.gov (United States)

    Thompson, Pamela; Fleming, Ryan; Bezabeh, Binyam; Huang, Fengying; Mao, Shenlan; Chen, Cui; Harper, Jay; Zhong, Haihong; Gao, Xizhe; Yu, Xiang-Qing; Hinrichs, Mary Jane; Reed, Molly; Kamal, Adeela; Strout, Patrick; Cho, Song; Woods, Rob; Hollingsworth, Robert E; Dixit, Rakesh; Wu, Herren; Gao, Changshou; Dimasi, Nazzareno

    2016-08-28

    Antibody-drug conjugates (ADCs) are among the most promising empowered biologics for cancer treatment. ADCs are commonly prepared by chemical conjugation of small molecule cytotoxic anti-cancer drugs to antibodies through either lysine side chains or cysteine thiols generated by the reduction of interchain disulfide bonds. Both methods yield heterogeneous conjugates with complex biophysical properties and suboptimal serum stability, efficacy, and pharmacokinetics. To limit the complexity of cysteine-based ADCs, we have engineered and characterized in vitro and in vivo antibody cysteine variants that allow precise control of both site of conjugation and drug load per antibody molecule. We demonstrate that the chemically-defined cysteine-engineered antibody-tubulysin conjugates have improved ex vivo and in vivo stability, efficacy, and pharmacokinetics when compared to conventional cysteine-based ADCs with similar drug-to-antibody ratios. In addition, to limit the non-target FcγRs mediated uptake of the ADCs by cells of the innate immune system, which may result in off-target toxicities, the ADCs have been engineered to lack Fc-receptor binding. The strategies described herein are broadly applicable to any full-length IgG or Fc-based ADC and have been incorporated into an ADC that is in phase I clinical development. PMID:27327768

  12. Synthesis, Characterization, and Biological Activity Studies of Copper(II Mixed Compound with Histamine and Nalidixic Acid

    Directory of Open Access Journals (Sweden)

    Egla Yareth Bivián-Castro

    2009-01-01

    Full Text Available A mixed copper complex with deprotonated nalidixic acid (nal and histamine (hsm was synthesized and characterized by FTIR, UV-Vis, elemental analysis, and conductivity. The crystal structure of [Cu(hsm(nalH2O]Cl·3H2O (chn showed a pentacoordinated cooper(II in a square pyramidal geometry surrounded by two N atoms from hsm, two O atoms from the quinolone, and one apical water oxygen. Alteration of bacterial DNA structure and/or associated functions in vivo by [Cu(hsm(nalH2O]Cl·3H2O was demonstrated by the induction of a recA-lacZ fusion integrated at the amyE locus of a recombinant Bacillus subtilis strain. Results from circular dichroism and denaturation of calf thymus DNA (CT-DNA suggested that increased amounts of copper complex were able to stabilize the double helix of DNA in vitro mainly by formation of hydrogen bonds between chn and the sugars of DNA minor groove. In vivo and in vitro biological activities of the chn complex were compared with the chemical nuclease [Cu(phen(nalH2O]NO3·3H2O (cpn where phen is phenanthroline.

  13. Synthesis, physicochemical characterization, and biological activities of new carnosine derivatives stable in human serum as potential neuroprotective agents.

    Science.gov (United States)

    Bertinaria, Massimo; Rolando, Barbara; Giorgis, Marta; Montanaro, Gabriele; Guglielmo, Stefano; Buonsanti, M Federica; Carabelli, Valentina; Gavello, Daniela; Daniele, Pier Giuseppe; Fruttero, Roberta; Gasco, Alberto

    2011-01-27

    The synthesis and the physicochemical and biological characterization of a series of carnosine amides bearing on the amido group alkyl substituents endowed with different lipophilicity are described. All synthesized products display carnosine-like properties differentiating from the lead for their high serum stability. They are able to complex Cu(2+) ions at physiological pH with the same stoichiometry as carnosine. The newly synthesized compounds display highly significant copper ion sequestering ability and are capable of protecting LDL from oxidation catalyzed by Cu(2+) ions, the most active compounds being the most hydrophilic ones. All the synthesized amides show quite potent carnosine-like HNE quenching activity; in particular, 7d, the member of the series selected for this kind of study, is able to cross the blood-brain barrier (BBB) and to protect primary mouse hippocampal neurons against HNE-induced death. These products can be considered metabolically stable analogues of carnosine and are worthy of additional investigation as potential neuroprotective agents. PMID:21182325

  14. Anisotropic polyvinyl alcohol hydrogel phantom for shear wave elastography in fibrous biological soft tissue: a multimodality characterization

    International Nuclear Information System (INIS)

    Shear wave elastography imaging techniques provide quantitative measurement of soft tissues elastic properties. Tendons, muscles and cerebral tissues are composed of fibers, which induce a strong anisotropic effect on the mechanical behavior. Currently, these tissues cannot be accurately represented by existing elastography phantoms. Recently, a novel approach for orthotropic hydrogel mimicking soft tissues has been developed (Millon et al 2006 J. Biomed. Mater. Res. B 305–11). The mechanical anisotropy is induced in a polyvinyl alcohol (PVA) cryogel by stretching the physical crosslinks of the polymeric chains while undergoing freeze/thaw cycles. In the present study we propose an original multimodality imaging characterization of this new transverse isotropic (TI) PVA hydrogel. Multiple properties were investigated using a large variety of techniques at different scales compared with an isotropic PVA hydrogel undergoing similar imaging and rheology protocols. The anisotropic mechanical (dynamic and static) properties were studied using supersonic shear wave imaging technique, full-field optical coherence tomography (FFOCT) strain imaging and classical linear rheometry using dynamic mechanical analysis. The anisotropic optical and ultrasonic spatial coherence properties were measured by FFOCT volumetric imaging and backscatter tensor imaging, respectively. Correlation of mechanical and optical properties demonstrates the complementarity of these techniques for the study of anisotropy on a multi-scale range as well as the potential of this TI phantom as fibrous tissue-mimicking phantom for shear wave elastographic applications. (paper)

  15. Anisotropic polyvinyl alcohol hydrogel phantom for shear wave elastography in fibrous biological soft tissue: a multimodality characterization

    Science.gov (United States)

    Chatelin, Simon; Bernal, Miguel; Deffieux, Thomas; Papadacci, Clément; Flaud, Patrice; Nahas, Amir; Boccara, Claude; Gennisson, Jean-Luc; Tanter, Mickael; Pernot, Mathieu

    2014-11-01

    Shear wave elastography imaging techniques provide quantitative measurement of soft tissues elastic properties. Tendons, muscles and cerebral tissues are composed of fibers, which induce a strong anisotropic effect on the mechanical behavior. Currently, these tissues cannot be accurately represented by existing elastography phantoms. Recently, a novel approach for orthotropic hydrogel mimicking soft tissues has been developed (Millon et al 2006 J. Biomed. Mater. Res. B 305-11). The mechanical anisotropy is induced in a polyvinyl alcohol (PVA) cryogel by stretching the physical crosslinks of the polymeric chains while undergoing freeze/thaw cycles. In the present study we propose an original multimodality imaging characterization of this new transverse isotropic (TI) PVA hydrogel. Multiple properties were investigated using a large variety of techniques at different scales compared with an isotropic PVA hydrogel undergoing similar imaging and rheology protocols. The anisotropic mechanical (dynamic and static) properties were studied using supersonic shear wave imaging technique, full-field optical coherence tomography (FFOCT) strain imaging and classical linear rheometry using dynamic mechanical analysis. The anisotropic optical and ultrasonic spatial coherence properties were measured by FFOCT volumetric imaging and backscatter tensor imaging, respectively. Correlation of mechanical and optical properties demonstrates the complementarity of these techniques for the study of anisotropy on a multi-scale range as well as the potential of this TI phantom as fibrous tissue-mimicking phantom for shear wave elastographic applications.

  16. Characterization of uranium and plutonium containing particles originating from the nuclear weapons accident in Thule, Greenland, 1968

    International Nuclear Information System (INIS)

    To improve long-term radioecological impact assessment for the contaminated ecosystem of Bylot Sound, Greenland, U and Pu containing particles have been characterized with respect to particle size, elemental distribution, morphology and oxidation states. Based on scanning electron microscopy with XRMA, particles ranging from about 20 to 40 μm were isolated. XRMA and μ-XRF mapping demonstrated that U and Pu were homogeneously distributed throughout the particles, indicating that U and Pu have been fused. Furthermore, μ-XANES showed that U and Pu in the particles were present as mixed oxides. U was found to be in oxidation state IV whereas Pu apparently is a mixture of Pu(III) and Pu(IV). As previous assessments are based on PuO2 only, revisions should be made, taking Pu(III) into account

  17. Characterization of uranium and plutonium containing particles originating from the nuclear weapons accident in Thule, Greenland, 1968.

    Science.gov (United States)

    Lind, O C; Salbu, B; Janssens, K; Proost, K; Dahlgaard, H

    2005-01-01

    To improve long-term radioecological impact assessment for the contaminated ecosystem of Bylot Sound, Greenland, U and Pu containing particles have been characterized with respect to particle size, elemental distribution, morphology and oxidation states. Based on scanning electron microscopy with XRMA, particles ranging from about 20 to 40 microm were isolated. XRMA and mu-XRF mapping demonstrated that U and Pu were homogeneously distributed throughout the particles, indicating that U and Pu have been fused. Furthermore, mu-XANES showed that U and Pu in the particles were present as mixed oxides. U was found to be in oxidation state IV whereas Pu apparently is a mixture of Pu(III) and Pu(IV). As previous assessments are based on PuO2 only, revisions should be made, taking Pu(III) into account. PMID:15748658

  18. A los 150 años desde "El origen de las especies": ¿es darwinista la biología contemporánea? At 150 years since "The origin of species": Is contemporary biology Darwinian?

    OpenAIRE

    GUILLERMO FOLGUERA; FRANCISCO BOZINOVIC

    2009-01-01

    A los 150 años de la publicación de "El origen de las especies" de Charles Darwin, numerosos homenajes se han realizado en diferentes ciudades del mundo. Sin embargo, es importante preguntarse hacia el seno de la comunidad científica acerca del alcance efectivo del darwinisimo dentro de la biología. En este trabajo analizamos este supuesto intentando responder, al menos de una manera aproximativa, la pregunta: ¿es darwinista la biología en la actualidad? A estos fines, consideramos algunos de...

  19. Flow field-flow fractionation and characterization of ionic and neutral polysaccharides of vegetable and microbial origin.

    Science.gov (United States)

    Benincasa, Maria-Anna; Cartoni, Giampaolo; Delle Fratte, Chiara

    2002-08-23

    The flow field-flow fractionation (FlFFF) analysis of a variety of neutral as well as ionic polysaccharides from plants and micro-organisms shows the generally broad distribution in molecular size of these polymers. This result is also obtained on a commercial sample of pullulan whose size distribution appears much wider than that of any of five standard fractions of the same polymer. Clear evidence of some physico-chemical properties of the polysaccharides is given by the study of the effect of the carrier ionic strength on salep, oxidized salep and konjac, carboxymethylcellulose and hyaluronic acid. While neutral polysaccharides, regardless of their origin, only slightly change size distribution in the presence of a simple electrolyte in solution, charged polymers, either naturally charged or chemically ionized, consistently exhibit very low retention levels in water which dramatically increase even at low salt concentrations. Exclusion mechanisms, including steric effects, are shown to be responsible for the anticipated retention times in water of these species that assume the expected statistical coil behavior only when electric charges are screened by the added electrolyte. Under these conditions, higher retention levels are obtained because the volume adjacent to the accumulation wall becomes more accessible to the sample during relaxation. On the basis of these findings, the elution behavior of a number of polysaccharide samples in-laboratory obtained from the fungus Aureobasidium pullulans under different incubation conditions is attributed to the presence of species varying in physico-chemical properties and molecular size. PMID:12685569

  20. Origins of felsic magmas in Japanese subduction zone: Geochemical characterizations of tephra from caldera-forming eruptions <5 Ma

    Science.gov (United States)

    Kimura, Jun-Ichi; Nagahashi, Yoshitaka; Satoguchi, Yasufumi; Chang, Qing

    2015-07-01

    Dacitic to rhyolitic glass shards from 80 widespread tephras erupted during the past 5 Mys from calderas in Kyushu, and SW, central, and NE Japan were analyzed. Laser ablation inductively coupled plasma mass spectrometry was used to determine 10 major and 33 trace elements and 207Pb/206Pb-208Pb/206Pb isotope ratios. The tephras were classified into three major geochemical types and their source rocks were identified as plutonic, sedimentary, and intermediate amphibolite rocks in the upper crust. A few tephras from SW Japan were identified as adakite and alkali rhyolite and were regarded to have originated from slab melt and mantle melt, respectively. The Pb isotope ratios of the tephras are comparable to those of the intermediate lavas in the source areas but are different from the basalts in these areas. The crustal assimilants for the intermediate lavas were largely from crustal melts and are represented by the rhyolitic tephras. A large heat source is required for forming large volumes of felsic crustal melts and is usually supplied by the mantle via basalt. Hydrous arc basalt formed by cold slab subduction is voluminous, and its heat transfer with high water content may have melted crustal rocks leading to effective felsic magma production. Coincidence of basalt and felsic magma activities shown by this study suggests caldera-forming eruptions are ultimately the effect of a mantle-driven cause.

  1. Design and implementation of optical imaging and sensor systems for characterization of deep-sea biological camouflage

    Science.gov (United States)

    Haag, Justin Mathew

    The visual ecology of deep-sea animals has long been of scientific interest. In the open ocean, where there is no physical structure to hide within or behind, diverse strategies have evolved to solve the problem of camouflage from a potential predator. Simulations of specific predator-prey scenarios have yielded estimates of the range of possible appearances that an animal may exhibit. However, there is a limited amount of quantitative information available related to both animal appearance and the light field at mesopelagic depths (200 m to 1000 m). To mitigate this problem, novel optical instrumentation, taking advantage of recent technological advances, was developed and is described in this dissertation. In the first half of this dissertation, the appearance of mirrored marine animals is quantitatively evaluated. A portable optical imaging scatterometer was developed to measure angular reflectance, described by the bidirectional reflectance distribution function (BRDF), of biological specimens. The instrument allows for BRDF capture from samples of arbitrary size, over a significant fraction of the reflectance hemisphere. Multiple specimens representing two species of marine animals, collected at mesopelagic depths, were characterized using the scatterometer. Low-dimensional parametric models were developed to simplify use of the data sets, and to validate the BRDF method. Results from principal component analysis confirm that BRDF measurements can be used to study intra- and interspecific variability of mirrored marine animal appearance. Collaborative efforts utilizing the BRDF data sets to develop physically-based scattering models are underway. In the second half of this dissertation, another key part of the deep-sea biological camouflage problem is examined. Two underwater radiometers, capable of low-light measurements, were developed to address the lack of available information related to the deep-sea light field. Quantitative comparison of spectral

  2. Insights into islet development and biology through characterization of a human iPSC-derived endocrine pancreas model.

    Science.gov (United States)

    van de Bunt, Martijn; Lako, Majlinda; Barrett, Amy; Gloyn, Anna L; Hansson, Mattias; McCarthy, Mark I; Beer, Nicola L; Honoré, Christian

    2016-04-18

    Directed differentiation of stem cells offers a scalable solution to the need for human cell models recapitulating islet biology and T2D pathogenesis. We profiled mRNA expression at 6 stages of an induced pluripotent stem cell (iPSC) model of endocrine pancreas development from 2 donors, and characterized the distinct transcriptomic profiles associated with each stage. Established regulators of endodermal lineage commitment, such as SOX17 (log2 fold change [FC] compared to iPSCs = 14.2, p-value = 4.9 × 10(-5)) and the pancreatic agenesis gene GATA6 (log2 FC = 12.1, p-value = 8.6 × 10(-5)), showed transcriptional variation consistent with their known developmental roles. However, these analyses highlighted many other genes with stage-specific expression patterns, some of which may be novel drivers or markers of islet development. For example, the leptin receptor gene, LEPR, was most highly expressed in published data from in vivo-matured cells compared to our endocrine pancreas-like cells (log2 FC = 5.5, p-value = 2.0 × 10(-12)), suggesting a role for the leptin pathway in the maturation process. Endocrine pancreas-like cells showed significant stage-selective expression of adult islet genes, including INS, ABCC8, and GLP1R, and enrichment of relevant GO-terms (e.g. "insulin secretion"; odds ratio = 4.2, p-value = 1.9 × 10(-3)): however, principal component analysis indicated that in vitro-differentiated cells were more immature than adult islets. Integration of the stage-specific expression information with genetic data from T2D genome-wide association studies revealed that 46 of 82 T2D-associated loci harbor genes present in at least one developmental stage, facilitating refinement of potential effector transcripts. Together, these data show that expression profiling in an iPSC islet development model can further understanding of islet biology and T2D pathogenesis. PMID:27246810

  3. Origin of the Sub-diffusive Behavior and Crossover From a Sub-diffusive to a Super-diffusive Dynamics Near a Biological Surface

    OpenAIRE

    Mukherjee, Arnab; Bagchi, Biman

    2002-01-01

    Diffusion of a tagged particle near a constraining biological surface is examined numerically by modeling the surface-water interaction by an effective potential. The effective potential is assumed to be given by an asymmetric double well constrained by a repulsive surface towards $r=0$ and unbound at large distances. The time and space dependent probability distribution $P(r,t)$ of the underlying Smoluchowski equation is solved by using Crank-Nicholson method. The mean square displacement sh...

  4. PTR-MS Characterization of VOCs Associated with Commercial Aromatic Bakery Yeasts of Wine and Beer Origin

    Directory of Open Access Journals (Sweden)

    Vittorio Capozzi

    2016-04-01

    Full Text Available In light of the increasing attention towards “green” solutions to improve food quality, the use of aromatic-enhancing microorganisms offers the advantage to be a natural and sustainable solution that did not negatively influence the list of ingredients. In this study, we characterize, for the first time, volatile organic compounds (VOCs associated with aromatic bakery yeasts. Three commercial bakery starter cultures, respectively formulated with three Saccharomyces cerevisiae strains, isolated from white wine, red wine, and beer, were monitored by a proton-transfer-reaction time-of-flight mass spectrometer (PTR-ToF-MS, a direct injection analytical technique for detecting volatile organic compounds with high sensitivity (VOCs. Two ethanol-related peaks (m/z 65.059 and 75.080 described qualitative differences in fermentative performances. The release of compounds associated to the peaks at m/z 89.059, m/z 103.075, and m/z 117.093, tentatively identified as acetoin and esters, are coherent with claimed flavor properties of the investigated strains. We propose these mass peaks and their related fragments as biomarkers to optimize the aromatic performances of commercial preparations and for the rapid massive screening of yeast collections.

  5. PTR-MS Characterization of VOCs Associated with Commercial Aromatic Bakery Yeasts of Wine and Beer Origin.

    Science.gov (United States)

    Capozzi, Vittorio; Makhoul, Salim; Aprea, Eugenio; Romano, Andrea; Cappellin, Luca; Sanchez Jimena, Ana; Spano, Giuseppe; Gasperi, Flavia; Scampicchio, Matteo; Biasioli, Franco

    2016-01-01

    In light of the increasing attention towards "green" solutions to improve food quality, the use of aromatic-enhancing microorganisms offers the advantage to be a natural and sustainable solution that did not negatively influence the list of ingredients. In this study, we characterize, for the first time, volatile organic compounds (VOCs) associated with aromatic bakery yeasts. Three commercial bakery starter cultures, respectively formulated with three Saccharomyces cerevisiae strains, isolated from white wine, red wine, and beer, were monitored by a proton-transfer-reaction time-of-flight mass spectrometer (PTR-ToF-MS), a direct injection analytical technique for detecting volatile organic compounds with high sensitivity (VOCs). Two ethanol-related peaks (m/z 65.059 and 75.080) described qualitative differences in fermentative performances. The release of compounds associated to the peaks at m/z 89.059, m/z 103.075, and m/z 117.093, tentatively identified as acetoin and esters, are coherent with claimed flavor properties of the investigated strains. We propose these mass peaks and their related fragments as biomarkers to optimize the aromatic performances of commercial preparations and for the rapid massive screening of yeast collections. PMID:27077836

  6. Chemical and biological characterization of new Re(CO)3/[99mTc](CO)3 bombesin analogues

    International Nuclear Information System (INIS)

    Introduction: Bombesin, a neuropeptide with potential for breast and prostate tumor targeting, is rapidly metabolized in vivo, and as a result, uptake in tumor xenografts in mice is poor. An improvement can be expected from the introduction of nonnatural amino acids and spacers. Leu13 was replaced by cyclohexylalanine and Met14 by norleucine. Two spacers, -βAla-βAla- and 3,6-dioxa-8-aminooctanoic acid, were inserted between the receptor-binding amino acid sequence (7-14) of bombesin (BBS) and the retroNα-carboxymethyl histidine chelator used for labeling with the [99mTc](CO)3 core and the rhenium (Re) congener. Methods: The biological characterization of the new compounds was performed both in vitro on prostate carcinoma PC-3 cells (binding affinity, internalization/externalization) and in vivo (biodistribution in nude mice with tumor xenografts). The stability was also investigated in human plasma. The Re analogues were prepared for chemical characterization. Results: The nonnatural amino acids led to markedly slower degradation in human plasma and PC-3 cell cultures. The receptor affinity of the new technetium 99m ([99mTc])-labeled BBS analogues was similar to the unmodified compound with K d<1 nM. Uptake in the pancreas and in PC-3 tumor xenografts in nude mice was blocked by unlabeled BBS. The best target-to-nontarget uptake ratio was clearly due to the presence of the more polar spacer, -βAla-βAla-. Conclusions: The different spacers did not have a significant effect on stability or receptor affinity but had a clear influence on the uptake in healthy organs and tumors. Uptake in the kidneys was lower than in the liver, which is likely to be due to the lipophilicity of the compounds. A specific, high uptake was also observed in the gastrin-releasing peptide receptor-rich pancreas. Thus, with the introduction of spacers the in vivo properties of the compounds can be improved while leaving the affinity unaffected

  7. Gastrointestinal absorption and biological activities of serine and cysteine proteases of animal and plant origin: review on absorption of serine and cysteine proteases

    OpenAIRE

    Lorkowski, Gerhard

    2012-01-01

    Research has confirmed that peptides and larger protein molecules pass through the mucosal barrier of the gastrointestinal tract. Orally administered serine and cysteine proteases of plant and animal origin also reach blood and lymph as intact, high molecular weight and physiologically active protein molecules. Their absorption may be supported by a self-enhanced paracellular transport mechanism resulting in sub-nanomolar concentration of transiently free protease molecules or, in a complex w...

  8. Analysis of pairwise correlations in multi-parametric PET/MR data for biological tumor characterization and treatment individualization strategies

    International Nuclear Information System (INIS)

    The aim of this pilot study was to explore simultaneous functional PET/MR for biological characterization of tumors and potential future treatment adaptations. To investigate the extent of complementarity between different PET/MR-based functional datasets, a pairwise correlation analysis was performed. Functional datasets of N=15 head and neck (HN) cancer patients were evaluated. For patients of group A (N=7), combined PET/MR datasets including FDG-PET and ADC maps were available. Patients of group B (N=8) had FMISO-PET, DCE-MRI and ADC maps from combined PET/MRI, an additional dynamic FMISO-PET/CT acquired directly after FMISO tracer injection as well as an FDG-PET/CT acquired a few days earlier. From DCE-MR, parameter maps Ktrans, ve and vp were obtained with the extended Tofts model. Moreover, parameter maps of mean DCE enhancement, ΔSDCE, and mean FMISO signal 0-4 min p.i., anti AFMISO, were derived. Pairwise correlations were quantified using the Spearman correlation coefficient (r) on both a voxel and a regional level within the gross tumor volume. Between some pairs of functional imaging modalities moderate correlations were observed with respect to the median over all patient datasets, whereas distinct correlations were only present on an individual basis. Highest inter-modality median correlations on the voxel level were obtained for FDG/FMISO (r = 0.56), FDG/ anti AFMISO (r = 0.55), anti AFMISO/ΔSDCE (r = 0.46), and FDG/ADC (r = -0.39). Correlations on the regional level showed comparable results. The results of this study suggest that the examined functional datasets provide complementary information. However, only pairwise correlations were examined, and correlations could still exist between combinations of three or more datasets. These results might contribute to the future design of individually adapted treatment approaches based on multiparametric functional imaging.

  9. The green synthesis, characterization, and evaluation of the biological activities of silver nanoparticles synthesized from Leptadenia reticulata leaf extract

    Science.gov (United States)

    Kumara Swamy, M.; Sudipta, K. M.; Jayanta, K.; Balasubramanya, S.

    2015-01-01

    Biosynthesis of silver nanoparticles (Ag Nps) was carried out using methanol leaves extract of L. reticulata. Ag Nps were characterized based on the observations of UV-visible spectroscopy, transmission electron microscopy, and X-ray diffraction (XRD) analysis. These Ag Nps were tested for antimicrobial activity by agar well diffusion method against different pathogenic microorganisms and antioxidant activity was performed using DPPH assay. Further, the in vitro cytotoxic effects of Ag Nps were screened against HCT15 cancer cell line and viability of tumor cells was confirmed using MTT ((3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide, a yellow tetrazole)) assay. The nuclear condensation was studied using the propidium iodide-staining method. The color change from green to dark brown and the absorbance peak at about 420 nm indicated the formation of nanoparticles. XRD pattern showed characteristic peaks indexed to the crystalline planes (111), (200) and (220) of face-centered cubic silver. The nanoparticles were of spherical shape with varying sizes ranging from 50 to 70 nm. Biosynthesized Ag Nps showed potent antibacterial activity and effective radical scavenging activity. MTT assay revealed a dose-dependent decrease in cell viability. Microscopic observations showed distinct cellular morphological changes indicating unhealthy cells, whereas the control appeared normal. Increase in the number of propidium iodide positive cells were observed in maximum concentration. Methanolic leaf extract of L. reticulata acts as an excellent capping agent for the formation of silver nanoparticles and demonstrates immense biological activities. Hence, these Ag NPs can be used as antibacterial, antioxidant as well as cytotoxic agent in treating many medical complications.

  10. Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights.

    Science.gov (United States)

    Bertelli, Claire; Aeby, Sébastien; Chassot, Bérénice; Clulow, James; Hilfiker, Olivier; Rappo, Samuel; Ritzmann, Sébastien; Schumacher, Paolo; Terrettaz, Céline; Benaglio, Paola; Falquet, Laurent; Farinelli, Laurent; Gharib, Walid H; Goesmann, Alexander; Harshman, Keith; Linke, Burkhard; Miyazaki, Ryo; Rivolta, Carlo; Robinson-Rechavi, Marc; van der Meer, Jan Roelof; Greub, Gilbert

    2015-01-01

    With the widespread availability of high-throughput sequencing technologies, sequencing projects have become pervasive in the molecular life sciences. The huge bulk of data generated daily must be analyzed further by biologists with skills in bioinformatics and by "embedded bioinformaticians," i.e., bioinformaticians integrated in wet lab research groups. Thus, students interested in molecular life sciences must be trained in the main steps of genomics: sequencing, assembly, annotation and analysis. To reach that goal, a practical course has been set up for master students at the University of Lausanne: the "Sequence a genome" class. At the beginning of the academic year, a few bacterial species whose genome is unknown are provided to the students, who sequence and assemble the genome(s) and perform manual annotation. Here, we report the progress of the first class from September 2010 to June 2011 and the results obtained by seven master students who specifically assembled and annotated the genome of Estrella lausannensis, an obligate intracellular bacterium related to Chlamydia. The draft genome of Estrella is composed of 29 scaffolds encompassing 2,819,825 bp that encode for 2233 putative proteins. Estrella also possesses a 9136 bp plasmid that encodes for 14 genes, among which we found an integrase and a toxin/antitoxin module. Like all other members of the Chlamydiales order, Estrella possesses a highly conserved type III secretion system, considered as a key virulence factor. The annotation of the Estrella genome also allowed the characterization of the metabolic abilities of this strictly intracellular bacterium. Altogether, the students provided the scientific community with the Estrella genome sequence and a preliminary understanding of the biology of this recently-discovered bacterial genus, while learning to use cutting-edge technologies for sequencing and to perform bioinformatics analyses. PMID:25745418

  11. Kinetic Characterization by Respirometry of Volatile OrganicCompound-Degrading Biofilms from Gas-Phase Biological Filters

    OpenAIRE

    Gonzalez Sanchez, A.; Arellano Garcia, L.; Bonilla Blancas, W.; Baquerizo, G.; Hernandez, S.; Gabriel, D.; Revah, S.

    2014-01-01

    A novel heterogeneous respirometer for in situ assessment of the biological activity and mass transport phenomena of biofilm developed on packing materials of gas-phase biological filters is presented. The flexible respirometer configuration allows reproducing the operational features of biofilters and biotrickling filters to obtain reliable diagnoses of the bioreactor performance. A batch-operating mode was chosen for the biological assessment in which dynamic concentrations of oxygen, pollu...

  12. Production and Characterization of Fengycin by Indigenous Bacillus subtilis F29-3 Originating from a Potato Farm

    Directory of Open Access Journals (Sweden)

    Shan-Yu Chen

    2010-11-01

    Full Text Available Fengycin, a lipopeptide biosurfactant, was produced by indigenous Bacillus subtilis F29-3 isolated from a potato farm. Although inhibiting the growth of filamentous fungi, the fengycin is ineffective against yeast and bacteria. In this study, fengycin was isolated from fermentation broth of B. subtilis F29-3 via acidic precipitation (pH 2.0 with 5 N HCl followed by purification using ultrafiltration and nanofiltration. The purified fengycin product was characterized qualitatively by using fast atom bombardment-mass spectrometer, Fourier transform infrared spectrometer, ultraviolet-visible spectrophotometer, 13C-nuclear magnetic resonance spectrometer and matrix assisted laser desorption ionization-time of flight, followed by quantitative analysis using reversed-phase HPLC system. This study also attempted to increase fengycin production by B. subtilis F29-3 in order to optimize the fermentation medium constituents. The fermentation medium composition was optimized using response surface methodology (RSM to increase fengycin production from B. subtilis F29-3. According to results of the five-level four-factor central composite design, the composition of soybean meal, NaNO3, MnSO4·4H2O, mannitol-mannitol, soybean meal-mannitol, soybean meal‑soybean meal, NaNO3-NaNO3 and MnSO4·4H2O-MnSO4·4H2O significantly affected production. The simulation model produced a coefficient of determination (R2 of 0.9043, capable of accounting for 90.43% variability of the data. Results of the steepest ascent and central composite design indicated that 26.2 g/L of mannitol, 21.9 g/L of soybean meal, 3.1 g/L of NaNO3 and 0.2 g/L of MnSO4·4H2O represented the optimal medium composition, leading to the highest production of fengycin. Furthermore, the optimization strategy increased the fengycin production from 1.2 g/L to 3.5 g/L.

  13. Structural characterization and discrimination of Chinese medicinal materials with multiple botanical origins based on metabolite profiling and chemometrics analysis: Clematidis Radix et Rhizoma as a case study.

    Science.gov (United States)

    Guo, Lin-Xiu; Li, Rui; Liu, Ke; Yang, Jie; Li, Hui-Jun; Li, Song-Lin; Liu, Jian-Qun; Liu, Li-Fang; Xin, Gui-Zhong

    2015-12-18

    Traditional Chinese medicines (TCMs)-based products are becoming more and more popular over the world. To ensure the safety and efficacy, authentication of Chinese medicinal materials has been an important issue, especially for that with multiple botanical origins (one-to-multiple). Taking Clematidis Radix et Rhizoma (CRR) as a case study, we herein developed an integrated platform based on metabolite profiling and chemometrics analysis to characterize, classify, and predict the "one-to-multiple" herbs. Firstly, the predominant constituents, triterpenoid saponins, in three Clematis CRR were rapid characterized by a novel UPLC-QTOF/MS-based strategy, and a total of 49 triterpenoid saponins were identified. Secondly, metabolite profiling was performed by UPLC-QTOF/MS, and 4623 variables were extracted and aligned as dataset. Thirdly, by using pattern recognition analysis, a clear separation of the three Clematis CRR was achieved as well as a total number of 28 variables were screened as the valuable variables for discrimination. By matching with identified saponins, these 28 variables were corresponding to 10 saponins which were identified as marker compounds. Fourthly, based on the relative intensity of the marker compounds-related variables, genetic algorithm optimized support vector machines (GA-SVM) was employed to predict the species of CRR samples. The obtained model showed excellent prediction performance with a prediction accuracy of 100%. Finally, a heatmap visualization was employed for clarifying the distribution of identified saponins, which could be useful for phytochemotaxonomy study of Clematis herbs. These results indicated that our proposed platform was a powerful tool for chemical profiling and discrimination of herbs with multiple botanical origins, providing promising perspectives in tracking the formulation processes of TCMs products. PMID:26610614

  14. A sharper characterization of the geographical origin of Lebanese wines by a new interpretation of the hydrogen isotope ratios of ethanol.

    Science.gov (United States)

    Bejjani, Joseph; Balaban, Maha; Rizk, Toufic

    2014-12-15

    The hydrogen isotope ratios of the methyl [(D/H)I] and methylene [(D/H)II] groups in ethanol can be used as geographical origin tracers of wines. These ratios reflect not only the deuterium content of sugars but also that of water in the grape medium, and hence are influenced by the irrigation, the degree of ripeness at harvest, and other viticultural and enological practices. Thus, the isotopic redistribution coefficients between water in the grape must and the methyl and methylene sites of ethanol were determined and then used to compute an isotopic ratio [(D/H)Is] representing the contribution of the fermentable sugars to (D/H)I. To evaluate the discrimination power of (D/H)Is, the ethanol D/H ratios of 78 Lebanese wine samples from different vineyards were determined using the SNIF-NMR method. An improved classification at the subregional level was obtained using (D/H)Is which exhibits an inverse linear correlation with the annual precipitation amount. Furthermore, the variations of the ethanol D/H ratios with the degree of grape ripeness and with the juice fractions obtained from the inner and peripheral pulps of the grape berries were studied on a small sample set. These factors should be considered when using the SNIF-NMR results to characterize the geographical origin of wines. PMID:25038659

  15. Biological characterization of the colombian isolate Heterorhabditis sp. SL0708 (Rhabditida: Heterorhabditidae - doi: 10.4025/actascibiolsci.v35i3.16034

    OpenAIRE

    Maria Camila Mejia Torres; Adriana Sáenz Aponte

    2013-01-01

    Heterorhabditis sp SL0708 (Rhabditida: Heterorhabditidae) is a native entomopathogenic nematode from Alcalá, Valle del Cauca (Colombia), a natural enemy of insects that can be used for controlling Plutella xylostella L, Conotrachelus psidii Marshall and Delia platura (Meigen); however its biological characterization is unknown. In order to know about the infective capacity of the isolate, tests were made with last instar larvae of Galleria mellonella (Lepidoptera: Pyrallidae) on penetration,...

  16. Characterization of biologically effective UV radiation at mid-latitudes sites: innovative method for the calculation of the human vitamin D exposure

    OpenAIRE

    Modesti, Sarah

    2012-01-01

    The Italian territory has the potential for receiving high solar ultraviolet (UV) doses during most of the year. This may represent a serious hazard for human health as UV radiation is responsible for skin cancer: Italy is in the third place, after Australia and USA, for melanoma occurrences. It ought to be remember that UV radiation has well-established beneficial effects on the skin, most notably the synthesis of vitamin D3. However a climatological characterization of biologically effecti...

  17. Analysis of pairwise correlations in multi-parametric PET/MR data for biological tumor characterization and treatment individualization strategies

    Energy Technology Data Exchange (ETDEWEB)

    Leibfarth, Sara; Moennich, David; Thorwarth, Daniela [University Hospital Tuebingen, Section for Biomedical Physics, Department of Radiation Oncology, Tuebingen (Germany); Simoncic, Urban [University Hospital Tuebingen, Section for Biomedical Physics, Department of Radiation Oncology, Tuebingen (Germany); University of Ljubljana, Faculty of Mathematics and Physics, Ljubljana (Slovenia); Jozef Stefan Institute, Ljubljana (Slovenia); Welz, Stefan; Zips, Daniel [University Hospital Tuebingen, Department of Radiation Oncology, Tuebingen (Germany); Schmidt, Holger; Schwenzer, Nina [University Hospital Tuebingen, Department of Diagnostic and Interventional Radiology, Tuebingen (Germany)

    2016-07-15

    The aim of this pilot study was to explore simultaneous functional PET/MR for biological characterization of tumors and potential future treatment adaptations. To investigate the extent of complementarity between different PET/MR-based functional datasets, a pairwise correlation analysis was performed. Functional datasets of N=15 head and neck (HN) cancer patients were evaluated. For patients of group A (N=7), combined PET/MR datasets including FDG-PET and ADC maps were available. Patients of group B (N=8) had FMISO-PET, DCE-MRI and ADC maps from combined PET/MRI, an additional dynamic FMISO-PET/CT acquired directly after FMISO tracer injection as well as an FDG-PET/CT acquired a few days earlier. From DCE-MR, parameter maps K{sup trans}, v{sub e} and v{sub p} were obtained with the extended Tofts model. Moreover, parameter maps of mean DCE enhancement, ΔS{sub DCE}, and mean FMISO signal 0-4 min p.i., anti A{sub FMISO}, were derived. Pairwise correlations were quantified using the Spearman correlation coefficient (r) on both a voxel and a regional level within the gross tumor volume. Between some pairs of functional imaging modalities moderate correlations were observed with respect to the median over all patient datasets, whereas distinct correlations were only present on an individual basis. Highest inter-modality median correlations on the voxel level were obtained for FDG/FMISO (r = 0.56), FDG/ anti A{sub FMISO} (r = 0.55), anti A{sub FMISO}/ΔS{sub DCE} (r = 0.46), and FDG/ADC (r = -0.39). Correlations on the regional level showed comparable results. The results of this study suggest that the examined functional datasets provide complementary information. However, only pairwise correlations were examined, and correlations could still exist between combinations of three or more datasets. These results might contribute to the future design of individually adapted treatment approaches based on multiparametric functional imaging.

  18. Differentiation study between alfalfa mosaic virus and red clover mottle virus affecting broad bean by biological and molecular characterization

    Czech Academy of Sciences Publication Activity Database

    Mahmoud, S.Y.M.; Khaled, A.-S.G.A.; Petrzik, Karel

    2010-01-01

    Roč. 6, č. 4 (2010), s. 224-239. ISSN 1816-4900 Institutional research plan: CEZ:AV0Z50510513 Keywords : identification * phylogenetic relationship * nucleotide sequences Subject RIV: EB - Genetics ; Molecular Biology

  19. Biological heterogeneity and radiation sensitivity of in vitro propagated lung metastatic lines originated from a transplantable squamous cell carcinoma of BALB/c mouse

    International Nuclear Information System (INIS)

    Seven cell lines established from a diethylnitrosamine (DEN)-induced forestomach carcinoma (DEN3) of a BALB/c mouse and its six pulmonary metastatic foci were used to study the biological and functional diversity of tumor cells. DEN3 is a highly tumorigenic line capable of forming lung metastases readily. Six metastatic nodules were isolated from the lungs of syngeneic mice and six cell lines were established. The cell lines differed in characteristics such as tumorigenicity, metastatic capability, and in vivo and in vitro growth properties. Radiation sensitivity of these cell lines was examined by exposure, at near confluency stage of in vitro growth, to doses of 2.5 to 50 Gray (Gy) X-rays (1 Gy = 100 rads). Shortly after exposure (approximately 5 min), the cells were harvested and 10(5) cells were cultured or inoculated into syngeneic mice, or both. Growth of three of the six cell lines tested was prohibited by 5 Gy. However, some populations from the other cell lines were able to survive 5 or 10 Gy. Progenies of the cells that survived primary radiation exposure after several in vitro passages were able to withstand another exposure of the same magnitude but not a higher dose. The X-rayed survivor cells also maintained their tumorigenic potential

  20. In silico characterization of the functional and structural modules of the hemagglutinin protein from the swine-origin influenza virus A (H1N1)-2009

    Institute of Scientific and Technical Information of China (English)

    Christopher; VAVRICKA; GAO; George; F

    2010-01-01

    The 2009 swine-origin influenza virus (S-OIV,H1N1 subtype) has developed into a new pandemic influenza as announced by the World Health Organization.In order to uncover clues about the determinants for virulence and pathogenicity of the virus,we characterized the functional modules of the surface glycoprotein hemagglutinin (HA),the most important protein in molecular epidemiology and pathogenesis of influenza viruses.We analyzed receptor binding sites,basic patch,neutralization antibody epitopes and T cell epitopes in the HA protein of the current S-OIV according to the corresponding functional and structural modules previously characterized in other H1 HA molecules or HA molecules of other subtypes.We compared their differences and similarities systematically.Based on the amino acids defined as the functional and structural modules,the HA protein of 2009 S-OIV should specifically bind to the human 2,6-receptor.The D225G/E mutation in HA,which is found in some isolates,may confer dual binding specificity to the 2,3and 2,6-receptor based on previously reported work.This HA variant contains two basic patches,one of which results in increased basicity,suggesting enhanced membrane fusion function.The 2009 S-OIV HA also has an extra glycosylation site at position 276.Four of the five antibody neutralization epitopes identified in A/RP/8/34(H1N1) were exposed,but the other was hidden by a glycosylation site.The previously identified cytotoxic T cell epitopes in various HA molecules were summarized and their corresponding sequences in 2009 S-OIV HA were defined.These results are critical for understanding the pathogenicity of the virus and host immune response against the virus.

  1. [Characterization of cases contravening of regulations regarding primary aromatic amines originating from azo dyes in commercial textile products and leather products in European Union].

    Science.gov (United States)

    Kawakami, Tsuyoshi; Isama, Kazuo; Ikarashi, Yoshiaki

    2013-01-01

    Contraventions of regulations regarding primary aromatic amines (PAAs) originating from azo dyes in commercial textile products and leather products in European Union (EU), notified in the period between 2006 and 2012 were collected from the Rapid Alert System for non-food consumer products (RAPEX), were characterized. Various types of products (clothes, footwear, bedding, etc.) and their raw materials (cotton, silk, viscose, leather, etc.) were reported to have contravened the regulations. The contravention frequencies for products made in China and India were higher than those for other countries. Ten percentage of the country in which the reported products were produced was unknown. The notification frequencies for benzidine and 4-aminoazobenzene were higher than those for other PAAs. Contravention of regulations regarding benzidine, 4-aminoazobenzene, and 3,3'-dimethoxybenzidine were notified every year. Contraventions of regulations regarding five PAAs--classified as IARC group 1--were notified one or several times. Since the scale of the survey conducted in Japan were small compared with RAPEX, it is necessary that many kinds and number of products should be surveyed in Japan. In addition, it is also necessary to pay attention to 4-aminoazobenzene, while it has not been detected in the previous studies conducted in Japan. PMID:24340672

  2. Characterization of genes involved in biosynthesis of a novel antibiotic from Burkholderia cepacia BC11 and their role in biological control of Rhizoctonia solani

    Energy Technology Data Exchange (ETDEWEB)

    Kang, Y.; Carlson, R.; Tharpe, W.; Schell, M.A. [Univ. of Georgia, Athens, GA (United States)

    1998-10-01

    Genetic manipulation of fluorescent pseudomonads has provided major insight into their production of antifungal molecules and their role in biological control of plant disease. Burkholderia cepacia also produces antifungal activities, but its biological control activity is much less well characterized, in part due to difficulties in applying genetic tools. Here the authors report genetic and biochemical characterization of a soil isolate of B. cepacia relating to its production of an unusual antibiotic that is very active against a variety of soil fungi. Purification and preliminary structural analyses suggest that this antibiotic (called AFC-BC11) is a novel lipopeptide associated largely with the cell membrane. Analysis of conditions for optimal production of AFC-BC11 indicated stringent environmental regulation of its synthesis. Furthermore, the authors show that production of AFC-BC11 is largely responsible for the ability of B. cepacia BC11 to effectively control the damping-Off of cotton caused by the fungal pathogen Rhizoctonia solani in a gnotobiotic system. Using Tn5 mutagenesis, they identified, cloned, and characterized a region of the genome of strain BC11 that is required for production of this antifungal metabolite. DNA sequence analysis suggested that this region encodes proteins directly involved in the production of a nonribosomally synthesized lipopeptide.

  3. Characterization of an EST database for the perennial weed leafy spurge: an important resource for weed biology research

    Science.gov (United States)

    Genomics programs in the weed science community have not developed as rapidly as that of other crop, horticultural, forestry, and model plant systems. Development of genomic resources for selected model weeds are expected to enhance our understanding of weed biology, just as they have in other plant...

  4. Size distributions and temporal variations of biological aerosol particles in the Amazon rainforest characterized by microscopy and real-time UV-APS fluorescence techniques during AMAZE-08

    Directory of Open Access Journals (Sweden)

    J. A. Huffman

    2012-12-01

    Full Text Available As a part of the AMAZE-08 campaign during the wet season in the rainforest of central Amazonia, an ultraviolet aerodynamic particle sizer (UV-APS was operated for continuous measurements of fluorescent biological aerosol particles (FBAP. In the coarse particle size range (> 1 μm the campaign median and quartiles of FBAP number and mass concentration were 7.3 × 104 m−3 (4.0–13.2 × 104 m−3 and 0.72 μg m−3 (0.42–1.19 μg m−3, respectively, accounting for 24% (11–41% of total particle number and 47% (25–65% of total particle mass. During the five-week campaign in February–March 2008 the concentration of coarse-mode Saharan dust particles was highly variable. In contrast, FBAP concentrations remained fairly constant over the course of weeks and had a consistent daily pattern, peaking several hours before sunrise, suggesting observed FBAP was dominated by nocturnal spore emission. This conclusion was supported by the consistent FBAP number size distribution peaking at 2.3 μm, also attributed to fungal spores and mixed biological particles by scanning electron microscopy (SEM, light microscopy and biochemical staining. A second primary biological aerosol particle (PBAP mode between 0.5 and 1.0 μm was also observed by SEM, but exhibited little fluorescence and no true fungal staining. This mode may have consisted of single bacterial cells, brochosomes, various fragments of biological material, and small Chromalveolata (Chromista spores. Particles liquid-coated with mixed organic-inorganic material constituted a large fraction of observations, and these coatings contained salts likely from primary biological origin. We provide key support for the suggestion that real-time laser-induce fluorescence (LIF techniques using 355 nm excitation provide size-resolved concentrations of FBAP as a lower limit for the atmospheric abundance of biological particles in a pristine

  5. Characterizing the Biological and Geochemical Architecture of Hydrothermally Derived Sedimentary Deposits: Coupling Micro Raman Spectroscopy with Noble Gas Spectrometry

    Science.gov (United States)

    Bower, D. M.; Conrad, P. G.; Steele, A.; Fries, M. D.

    2016-05-01

    The chemical species in cherts and glass fragments were analyzed using micro Raman spectroscopy in conjunction with measurements of heavy noble gas isotopes to characterize hydrothermally derived sedimentary environments.

  6. Molecular, immunological, and biological characterization of Tityus serrulatus venom hyaluronidase: new insights into its role in envenomation.

    OpenAIRE

    Carolina Campolina Rebello Horta; Bárbara de Freitas Magalhães; Bárbara Bruna Ribeiro Oliveira-Mendes; Anderson Oliveira do Carmo; Clara Guerra Duarte; Liza Figueiredo Felicori; Ricardo Andrez Machado-de-Ávila; Carlos Chávez-Olórtegui; Evanguedes Kalapothakis

    2014-01-01

    BACKGROUND: Scorpionism is a public health problem in Brazil, and Tityus serrulatus (Ts) is primarily responsible for severe accidents. The main toxic components of Ts venom are low-molecular-weight neurotoxins; however, the venom also contains poorly characterized high-molecular-weight enzymes. Hyaluronidase is one such enzyme that has been poorly characterized. METHODS AND PRINCIPAL FINDINGS: We examined clones from a cDNA library of the Ts venom gland and described two novel isoforms of hy...

  7. Solid-State Synthesis, Characterization, and Biological Activity of the Bioinorganic Complex of Aspartic Acid and Arsenic Triiodide

    Directory of Open Access Journals (Sweden)

    Guo-Qing Zhong

    2013-01-01

    Full Text Available The bioinorganic complex of aspartic acid and arsenic triiodide was synthesized by a solid-state reaction at room temperature. The formula of the complex is AsI3[HOOCCH2CH(NH2COOH]2.5. The crystal structure of the complex belongs to monoclinic system with lattice parameters: a=1.0019 nm, b=1.5118 nm, c=2.1971 nm, and β=100.28°. The infrared spectra can demonstrate the complex formation between the arsenic ion and aspartic acid, and the complex may be a dimer with bridge structure. The result of primary biological test indicates that the complex possesses better biological activity for the HL-60 cells of the leukemia than arsenic triiodide.

  8. Characterization of Airborne Bacteria at a Subway Station: Implications for Testing and Evaluation of Biological Detection, Identification, and Monitoring Systems

    OpenAIRE

    Dybwad, Marius

    2014-01-01

    Biological detection, identification, and monitoring (BioDIM) systems that are able to provide rapid and reliable early-warning in the event of a bioterrorism attack may contribute to reduce the impact of such incidents. Currently, few if any available BioDIM systems have been able to meet all the users’ requirements with respect to reliable, sensitive, and selective detect-towarn capabilities in different operational environments. BioDIM efforts at most real life sites must be accomplished a...

  9. Coupling respirometry and titrimetry for the characterization of the biological activity of a SO-NR consortium

    OpenAIRE

    Mora, Mabel; Lopez, Luis R.; Gamisans Noguera, Javier; Gabriel Buguña, David

    2014-01-01

    Determining growth rates and kinetic mechanisms of microbial consortia often needs of combining several tests and techniques. The present work demonstrates that combining titrimetric and respirometric data obtained in a single batch test allows obtaining the stoichiometric coefficients, biomass-substrate yields and biological oxidation rates for sulfide-oxidizing nitrate-reducing consortia obtained from an anoxic biotrickling filter for biogas desulfurization. Thiosulfate oxidation using eith...

  10. Biological Oceanography

    Science.gov (United States)

    Abbott, M. R.

    1984-01-01

    Within the framework of global biogeochemical cycles and ocean productivity, there are two areas that will be of particular interest to biological oceanography in the 1990s. The first is the mapping in space time of the biomass and productivity of phytoplankton in the world ocean. The second area is the coupling of biological and physical processes as it affects the distribution and growth rate of phytoplankton biomass. Certainly other areas will be of interest to biological oceanographers, but these two areas are amenable to observations from satellites. Temporal and spatial variability is a regular feature of marine ecosystems. The temporal and spatial variability of phytoplankton biomass and productivity which is ubiquitous at all time and space scales in the ocean must be characterized. Remote sensing from satellites addresses these problems with global observations of mesocale (2 to 20 days, 10 to 200 km) features over a long period of time.

  11. Surface characterization and biological evaluation of silver-incorporated DLC coatings fabricated by hybrid RF PACVD/MS method.

    Science.gov (United States)

    Bociąga, Dorota; Jakubowski, Witold; Komorowski, Piotr; Sobczyk-Guzenda, Anna; Jędrzejczak, Anna; Batory, Damian; Olejnik, Anna

    2016-06-01

    Since the biological response of the body towards an implanted material is mainly governed by its surface properties, biomaterials are improved by various kinds of coatings. Their role is to provide good mechanical and biological characteristics, and exclude some disadvantages like post-implantation infections. This phenomenon may be reduced by introduction of silver as an antibacterial agent. This study evaluates the Ag-DLC films synthesized by the hybrid RF PACVD/MS method according to the patent number PL401955-A1 worked out inter alia by the authors. Such tests as XPS, SEM, EDS, AFM, FTIR, Raman and ICP-TOF-MS were used to determine surface properties of the coatings. The obtained results were correlated with the biological response estimated on the basis of cells viability assay (osteoblast cells line Saos-2) and bacterial colonization test (Escherichia coli strain DH5α). Results showed that the hybrid RF PACVD/MS method allows one to get tight coating preventing the diffusion of harmful elements from the metallic substrate. Ag concentration increases with the growing power density, it occurs in metallic state, does not create chemical bonds and is evenly dispersed within the DLC matrix in the form of nanoscale silver clusters. Increasing silver content above 2at.% improves bactericidal properties, but decreases cell viability. PMID:27040240

  12. Characterization of an aquaporin-2 water channel gene mutation causing partial nephrogenic diabetes insipidus in a Mexican family: evidence of increased frequency of the mutation in the town of origin.

    NARCIS (Netherlands)

    Boccalandro, C.; Mattia, F.P. de; Guo, D.C.; Xue, L.; Orlander, P.; King, T.M.; Gupta, P.; Deen, P.M.T.; Lavis, V.R.; Milewicz, D.M.

    2004-01-01

    A Mexican family with partial congenital nephrogenic diabetes insipidus (NDI) that resulted from a mutation in the aquaporin-2 water channel (AQP2) was characterized, and the source of this rare mutation was traced to the family's town of origin in Mexico. Affected individuals with profound polyuria

  13. Volatile compounds and sensorial characterization of wines from four Spanish denominations of origin, aged in Spanish Rebollo (Quercus pyrenaica Willd.) oak wood barrels.

    Science.gov (United States)

    Fernández de Simón, Brígida; Cadahía, Estrella; Sanz, Miriam; Poveda, Pilar; Perez-Magariño, Silvia; Ortega-Heras, Miriam; González-Huerta, Carlos

    2008-10-01

    The evolution of almost 40 oak-related volatile compounds and the sensorial characteristics of red wines from four Spanish denominations of origin (DOs) (Bierzo, Toro, Ribera de Duero, and Rioja) during aging in barrels made of Rebollo oak wood, Quercus pyrenaica, were studied and compared to the same wines aged in American and French oak barrels. Each oak wood added unique and special characteristics to the wine, and in addition, each wine showed a different ability to extract the compounds, which result in these characteristics from the oak wood. In general, wines aged in Q. pyrenaica wood were characterized by high levels of eugenol, guaiacol, and other volatile phenols. In regards to compounds like cis-whiskylactone or maltol, the behavior of this wood is very similar to that of American oaks. When considering phenolic aldehydes and ketones, the levels of these compounds are intermediate between those of French and American woods and depend greatly on the type of wine. The type of oak, on the other hand, does not affect the chromatic characteristics of the wines. In sensory analysis, the biggest differences are found in the olfactory phase. Among the four DOs studied, wine aged in Q. pyrenaica presented the highest notes of wood, with more aromas of roasting, toasting, milky coffee, spices, or wine-wood interactions. The wines aged in barrels made of Q. pyrenaica wood were highly regarded, and preference was shown for them over those same wines when they had been aged in barrels of American or French oak. PMID:18778067

  14. SYNTHESIS, CHARACTERIZATION AND BIOLOGICAL EVALUATION OF A Fe3O4/C12 CORE/SHELL NANOSYSTEM

    Directory of Open Access Journals (Sweden)

    Alexandru Mihai Grumezescu

    2012-06-01

    Full Text Available Lauric acid (C12 functionalized Fe3O4 nanoparticles were fabricated and characterized by XRD, FT-IR, DTA-TG and TEM. Lauric acid was used as a coating agent, controlling particle size and aggregation during the synthesis. XRD confirms the formation of magnetite. FT-IR evidenced the successful surface fictionalization with C12, peaks assigned to lauric acid being identified in the nanopowder. The obtained core/shell nanostructure consists of spherical particles of several nanometers long, according to TEM characterization. The interaction with HEp2 cell line proved that Fe3O4/C12 nanostructures are biocompatible.

  15. Characterization of an Autotrophic Nitrogen-Removing Biofilm from a Highly Loaded Lab-Scale Rotating Biological Contactor

    OpenAIRE

    Pynaert, Kris; Smets, Barth F.; Wyffels, Stijn; Beheydt, Daan; Siciliano, Steven D.; Verstraete, Willy

    2003-01-01

    In this study, a lab-scale rotating biological contactor (RBC) treating a synthetic NH4+ wastewater devoid of organic carbon and showing high N losses was examined for several important physiological and microbial characteristics. The RBC biofilm removed 89% ± 5% of the influent N at the highest surface load of approximately 8.3 g of N m−2 day−1, with N2 as the main end product. In batch tests, the RBC biomass showed good aerobic and anoxic ammonium oxidation (147.8 ± 7.6 and 76.5 ± 6.4 mg of...

  16. The Biological Origin of Linguistic Diversity

    OpenAIRE

    Andrea Baronchelli; Nick Chater; Romualdo Pastor-Satorras; Christiansen, Morten H.

    2012-01-01

    In contrast with animal communication systems, diversity is characteristic of almost every aspect of human language. Languages variously employ tones, clicks, or manual signs to signal differences in meaning; some languages lack the noun-verb distinction (e.g., Straits Salish), whereas others have a proliferation of fine-grained syntactic categories (e.g., Tzeltal); and some languages do without morphology (e.g., Mandarin), while others pack a whole sentence into a single word (e.g., Cayuga)....

  17. A novel poly(γ-glutamic acid)/silk-sericin hydrogel for wound dressing: Synthesis, characterization and biological evaluation

    International Nuclear Information System (INIS)

    A novel multifunctional poly(γ-glutamic acid)/silk sericin (γ-PGA/SS) hydrogel has been developed and used as wound dressing. The physical and chemical properties of the γ-PGA/SS gels were systemically investigated. Furthermore, these γ-PGA/SS gels have been found to promote the L929 fibroblast cells proliferate, and in the in vivo study, significant stimulatory effects were also observed on granulation and capillary formation on day 9 in H-2-treated wounds, indicating that this new complex hydrogel could maintain a moist healing environment, protect the wound from bacterial infection, absorb excess exudates, and promote cell proliferation to reconstruct damaged tissue. Considering the simple preparation process and excellent biological property, this γ-PGA/SS hydrogel might have a wide range of applications in biomedical and clinical areas. - Highlights: • Novel biodegradable hydrogels from γ-PGA and SS were successfully fabricated. • The preparation of hydrogel for wound dressing is simple. • The addition of SS in hydrogel improved the mechanical and biological properties. • The hydrogel has the feasibility to use in clinical application

  18. A novel poly(γ-glutamic acid)/silk-sericin hydrogel for wound dressing: Synthesis, characterization and biological evaluation

    Energy Technology Data Exchange (ETDEWEB)

    Shi, Lu [Tianjin Key Laboratory of Fiber Modification and Functional Fiber, School of Materials Science and Engineering, Tianjin Polytechnic University, Tianjin 300387 (China); Yang, Ning, E-mail: summer_ningzi@163.com [Tianjin Key Laboratory of Fiber Modification and Functional Fiber, School of Materials Science and Engineering, Tianjin Polytechnic University, Tianjin 300387 (China); Zhang, Hao [Tianjin Key Laboratory of Fiber Modification and Functional Fiber, School of Materials Science and Engineering, Tianjin Polytechnic University, Tianjin 300387 (China); Chen, Li, E-mail: chenlis@tjpu.edu.cn [Tianjin Key Laboratory of Fiber Modification and Functional Fiber, School of Materials Science and Engineering, Tianjin Polytechnic University, Tianjin 300387 (China); Tao, Lei; Wei, Yen [Department of Chemistry, Tsinghua University, Beijing 100084 (China); Liu, Hui; Luo, Ying [Tianjin Key Laboratory of Artificial Cell, Tianjin Third Central Hospital, Tianjin 300170 (China)

    2015-03-01

    A novel multifunctional poly(γ-glutamic acid)/silk sericin (γ-PGA/SS) hydrogel has been developed and used as wound dressing. The physical and chemical properties of the γ-PGA/SS gels were systemically investigated. Furthermore, these γ-PGA/SS gels have been found to promote the L929 fibroblast cells proliferate, and in the in vivo study, significant stimulatory effects were also observed on granulation and capillary formation on day 9 in H-2-treated wounds, indicating that this new complex hydrogel could maintain a moist healing environment, protect the wound from bacterial infection, absorb excess exudates, and promote cell proliferation to reconstruct damaged tissue. Considering the simple preparation process and excellent biological property, this γ-PGA/SS hydrogel might have a wide range of applications in biomedical and clinical areas. - Highlights: • Novel biodegradable hydrogels from γ-PGA and SS were successfully fabricated. • The preparation of hydrogel for wound dressing is simple. • The addition of SS in hydrogel improved the mechanical and biological properties. • The hydrogel has the feasibility to use in clinical application.

  19. Challenges and characterization of a Biological system on Grid by means of the PhyloGrid application

    OpenAIRE

    Isea, Raul; Montes, Esther; Rubio-Montero, Antonio J.; Mayo, Rafael

    2014-01-01

    In this work we present a new application that is being developed. PhyloGrid is able to perform large-scale phylogenetic calculations as those that have been made for estimating the phylogeny of all the sequences already stored in the public NCBI database. The further analysis has been focused on checking the origin of the HIV-1 disease by means of a huge number of sequences that sum up to 2900 taxa. Such a study has been able to be done by the implementation of a workflow in Taverna.

  20. Biology of infantile hemangioma.

    Science.gov (United States)

    Itinteang, Tinte; Withers, Aaron H J; Davis, Paul F; Tan, Swee T

    2014-01-01

    Infantile hemangioma (IH), the most common tumor of infancy, is characterized by an initial proliferation during infancy followed by spontaneous involution over the next 5-10 years, often leaving a fibro-fatty residuum. IH is traditionally considered a tumor of the microvasculature. However, recent data show the critical role of stem cells in the biology of IH with emerging evidence suggesting an embryonic developmental anomaly due to aberrant proliferation and differentiation of a hemogenic endothelium with a neural crest phenotype that possesses the capacity for endothelial, hematopoietic, mesenchymal, and neuronal differentiation. Current evidence suggests a putative placental chorionic mesenchymal core cell embolic origin of IH during the first trimester. This review outlines the emerging role of stem cells and their interplay with the cytokine niche that promotes a post-natal environment conducive for vasculogenesis involving VEGFR-2 and its ligand VEGF-A and the IGF-2 ligand in promoting cellular proliferation, and the TRAIL-OPG anti-apoptotic pathway in preventing cellular apoptosis in IH. The discovery of the role of the renin-angiotensin system in the biology of IH provides a plausible explanation for the programed biologic behavior and the β-blocker-induced accelerated involution of this enigmatic condition. This crucially involves the vasoactive peptide, angiotensin II, that promotes cellular proliferation in IH predominantly via its action on the ATIIR2 isoform. The role of the RAS in the biology of IH is further supported by the effect of captopril, an ACE inhibitor, in inducing accelerated involution of IH. The discovery of the critical role of RAS in IH represents a novel and fascinating paradigm shift in the understanding of human development, IH, and other tumors in general. PMID:25593962

  1. Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans

    DEFF Research Database (Denmark)

    Martin, Michael David; Garrett Vieira, Filipe Jorge; Ho, Simon Y. W.; Wales, Nathan; Schubert, Mikkel; Seguin-Orlando, Andaine; Ristaino, Jean B.; Gilbert, M. Thomas P.

    2016-01-01

    outbreak remains disputed, as does the New World center of origin of the species itself. Both Mexico and South America have been proposed, generating considerable controversy. Here, we readdress the pathogen's origins using a genomic data set encompassing 71 globally sourced modern and historical samples...

  2. 7,7′-Bis[(aza-18-crown-6)carbonyl]thioindigo: Synthesis, Experimental, Theoretical Characterization and Biological Activities

    OpenAIRE

    Koparır, Metin

    2013-01-01

    This work presents the characterization of 7,7'-Bis[(aza-18-crown-6)carbonyl]thioindigo (I) by quantum chemical calculations and spectral techniques. The molecular geometry, frontier molecular orbitals (FMO), molecular electrostatic potentials (MEP) and nonlinear optical properties of I in the ground state have been calculated using the density functional method (B3LYP) with the 6−31G(d,p) basis set. The calculated results show that the optimized geometry can well reproduce the crystal struct...

  3. Synthesis, characterization and biological evaluation of novel diesters of 4,4'-dihydroxy azoxy benzene with long chain carboxylic acid

    International Nuclear Information System (INIS)

    Synthesis of novel symmetrical azoxy diesters have been prepared by the reaction of 4,4'-dihydroxyazoxy benzene with aliphatic acid halides of varying chain lengths. The synthesized compounds have been characterized by spectral and analytical means. These symmetrical azoxy diesters exhibit good antifungal against six fungal strains (Mucor species, Aspergillus niger, Aspergillus flavus, Alternaria solani, Fusarium solani and Aspergillus fumigatus) and antitumor activities while no significant antibacterial activity has been observed. These synthesized compounds are also potent free radical scavengers. (author)

  4. SYNTHESIS, CHARACTERIZATION AND BIOLOGICAL EVALUATION OF A Fe3O4/C12 CORE/SHELL NANOSYSTEM

    OpenAIRE

    Alexandru Mihai Grumezescu; Ecaterina Andronescu; Anton Ficai; Dan Eduard Mihaiescu; Bogdan Stefan Vasile; Coralia Bleotu

    2012-01-01

    Lauric acid (C12) functionalized Fe3O4 nanoparticles were fabricated and characterized by XRD, FT-IR, DTA-TG and TEM. Lauric acid was used as a coating agent, controlling particle size and aggregation during the synthesis. XRD confirms the formation of magnetite. FT-IR evidenced the successful surface fictionalization with C12, peaks assigned to lauric acid being identified in the nanopowder. The obtained core/shell nanostructure consists of spherical particles of several nanometers long, acc...

  5. Synthesis, Characterization and Biological Activity of Transition Metals with Schiff Base Derived from Adamantaneamine and o-Vanillin

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Five new solid complexes were synthesized about transition metals with Schiff base(L,C18H23NO2) derived from adamantaneamine and o-vanillin, and characterized by elemental analysis, molar conductance, infrared spectra, UV-vis spectra, thermal analysis. Their chemical formula are [ML2](ClO4)2 (M= Mn,Co,Ni,Cu,Zn),and the coordination numbers are four. The antibacterial activity of Schiff base ligand and its complexes was studied.

  6. Genomic and biological characterization of chiltepin yellow mosaic virus, a new tymovirus infecting Capsicum annuum var. aviculare in Mexico.

    OpenAIRE

    Pagán Muñoz, Jesús Israel; Betancourt Vásquez, Mónica; Miguel, Jacinto de; Piñero, Daniel; Fraile Pérez, Aurora; Garcia-Arenal Rodriguez, Fernando

    2010-01-01

    The characterization of viruses infecting wild plants is a key step towards understanding the ecology of plant viruses. In this work, the complete genomic nucleotide sequence of a new tymovirus species infecting chiltepin, the wild ancestor of Capsicum annuum pepper crops, in Mexico was determined, and its host range has been explored. The genome of 6,517 nucleotides has the three open reading frames described for tymoviruses, putatively encoding an RNA-dependent RNA polymerase, a movement pr...

  7. Origem da vida: como licenciandos em Ciências Biológicas lidam com este tema? Life's origin: how do pre-service Biology teachers deal with this subject?

    Directory of Open Access Journals (Sweden)

    Livia Baptista Nicolini

    2010-01-01

    Full Text Available A presente pesquisa identificou e analisou a representação social do tema origem da vida entre estudantes da licenciatura em Ciências Biológicas de uma universidade federal do Rio de Janeiro. A coleta de dados foi realizada por meio de questionário, e seus resultados analisados qualitativamente, de acordo com a metodologia do Discurso do Sujeito Coletivo (DSC. A análise e discussão dos resultados permitiram concluir que a representação social dos licenciandos, em relação ao tema proposto, apresenta elementos de uma cultura religiosa e de uma cultura científica. A análise dos elementos científicos nos permitiu identificar algumas deficiências nos conhecimentos expressos por esses sujeitos; apresentamos indícios de que essas deficiências derivam basicamente de duas fontes: (a a ausência de abordagem específica do tema no curso de graduação da universidade pesquisada e (b o conteúdo dos livros didáticos do Ensino Médio.This research identified and analyzed social representations about the life origin among preservice Biology teachers from a Rio de Janeiro federal university. Data were collected through questionnaires and the outcomes were analyzed in a qualitatively basis, according to the Collective Subject Discourse (CSD approach. Data analysis and discussion allowed concluding that pre-service social representations about this subject, shows elements of a religious culture and the scientific ones. The scientific elements' analysis allowed identifying some deficiencies in the knowledge expressed by them; the outcomes provided evidences that those deficiencies come from two main sources: (a lack of a approach to the origin of life subject, while in the undergraduate program; and (b High School didactic books contents.

  8. Chemical and biological characterization of novel essential oils from Eremophila bignoniiflora (F. Muell) (Myoporaceae): a traditional Aboriginal Australian bush medicine.

    Science.gov (United States)

    Sadgrove, Nicholas John; Hitchcock, Maria; Watson, Kenneth; Jones, Graham Lloyd

    2013-10-01

    Essential oils were extracted by hydrodistillation from the traditional Australian medicinal plant Eremophila bignoniiflora, characterized chemically and then screened for bioactivity. Characterization and quantification were completed using gas chromatography-mass spectrometry (GC-MS) and GC-flame ionization detection, respectively. Antimicrobial capacity was assessed using disc diffusion and micro-titre plate broth dilution and further characterized using thin layer chromatography followed by bioautography to assign activity to separated individual active components. Antifungal capacity was investigated using micro-titre plate broth dilution against pathogenic Trichophyton species. Free radical scavenging ability was assessed using the diphenylpicrylhydradyl reaction in methanol. The predominant components of the essential oil were fenchyl-acetate and bornyl-acetate. However, bioautography indicated antimicrobial ability to be largely linked to the less abundant, more polar constituents. Oils displayed only modest antifungal ability against pathogenic Trichophyton species associated with dermatophytosis, but moderate to high antimicrobial activity, particularly against the yeast Candida albicans and the bacteria Staphylococcus epidermidis. Essential oils exhibited relatively low free radical scavenging ability. Speculation over the role of essential oils in the traditional medicinal applications of E. bignoniiflora follows, exploring correlations between traditional use and investigated bioactivities. PMID:23193085

  9. Systems interface biology

    OpenAIRE

    Francis J Doyle; Stelling, Jörg

    2006-01-01

    The field of systems biology has attracted the attention of biologists, engineers, mathematicians, physicists, chemists and others in an endeavour to create systems-level understanding of complex biological networks. In particular, systems engineering methods are finding unique opportunities in characterizing the rich behaviour exhibited by biological systems. In the same manner, these new classes of biological problems are motivating novel developments in theoretical systems approaches. Henc...

  10. Synthesis and biological characterization of new amino-phosphonates for mitochondrial pH determination by 31P NMR spectroscopy

    International Nuclear Information System (INIS)

    A series of mitochondria targeted α-amino-phosphonates combining a diethoxy-phosphoryl group and an alkyl chain-connected triphenylphosphonium bromide tail were designed and synthesized, and their pH-sensitive 31P NMR properties and biological activities in vitro and in vivo were evaluated. The results showed a number of these mitoaminophosphonates exhibiting pKa values fitting the mitochondrial pH range, short relaxation, and chemical shift parameters compatible with sensitive 31P NMR detection, and low cytotoxicity on green algae and murine fibroblasts cell cultures. Of these, two selected compounds demonstrated to distribute at NMR detectable levels within the cytosolic and mitochondrial sites following their perfusion to isolated rat livers, with no detrimental effects on cell energetics and aerobic respiration. This study provided a new molecular scaffold for further development of in situ spectroscopic real-time monitoring of mitochondrion/cytosol pH gradients. (authors)

  11. Biological availability of lead in a paint aerosol. 1. Physical and chemical characterization of a lead paint aerosol.

    Science.gov (United States)

    Kalman, D; Schumacher, R; Covert, D; Eaton, D L

    1984-09-01

    This study was conducted to determine the physical and chemical characteristics of an aerosol of lead-based paint, generated in an industrial spray operation, that might influence the biological availability of lead present in inhaled aerosols. Paint aerosols were collected, and mass-size distribution was determined using a portable cascade impactor under actual occupational conditions. Approx. 2% of the particulate mass collected was in the respirable range (less than 10 micron mean aerodynamic diameter), although the maximum airborne concentration of lead was found to be 2-3 mg/m3. The lead concentration in a dried aerosol was very resistant to chemical digestion. Analysis by X-ray diffraction, atomic absorption spectroscopy and inductively coupled plasma emission spectroscopy showed approx. 11% lead by dry weight, although the wet weight concentration of lead reported by the manufacturer was 12.8%. PMID:6485003

  12. Phylogenetic Analysis of Nucleotide Sequences from the ITS Region and Biological Characterization of Nematophagous Fungi from Morelos, Mexico

    Directory of Open Access Journals (Sweden)

    Gloria Sarahí Castañeda-Ramírez

    2016-01-01

    Full Text Available We determined the morphological taxonomy of eighteen nematophagous fungi (NF, as well as their in vitro predatory activity against Haemonchus contortus infective larvae (L3. Fungi were classified into six genera and three species, the most common of which were Monacrosporium eudermatum and Arthrobotrys oligospora. We then sequenced five NF isolates using ITS4 and ITS5 primers. These sequences showed high identity with sequences from the NCBI database (98-99%. In contrast, alignments among the same genera and species demonstrated 83–97% identity. Polymorphisms observed between Arthrobotrys and Monacrosporium appear to be associated with differences in biological function, nonspecific mutations, evolutionary processes, feeding behaviour, predatory activity, and microecosystems.

  13. A novel poly(γ-glutamic acid)/silk-sericin hydrogel for wound dressing: Synthesis, characterization and biological evaluation.

    Science.gov (United States)

    Shi, Lu; Yang, Ning; Zhang, Hao; Chen, Li; Tao, Lei; Wei, Yen; Liu, Hui; Luo, Ying

    2015-03-01

    A novel multifunctional poly(γ-glutamic acid)/silk sericin (γ-PGA/SS) hydrogel has been developed and used as wound dressing. The physical and chemical properties of the γ-PGA/SS gels were systemically investigated. Furthermore, these γ-PGA/SS gels have been found to promote the L929 fibroblast cells proliferate, and in the in vivo study, significant stimulatory effects were also observed on granulation and capillary formation on day 9 in H-2-treated wounds, indicating that this new complex hydrogel could maintain a moist healing environment, protect the wound from bacterial infection, absorb excess exudates, and promote cell proliferation to reconstruct damaged tissue. Considering the simple preparation process and excellent biological property, this γ-PGA/SS hydrogel might have a wide range of applications in biomedical and clinical areas. PMID:25579954

  14. Synthesis, spectral, characterization, catalytic and biological studies of new RuII N2O Schiff base complexes

    International Nuclear Information System (INIS)

    Complexes of the type (RuCl(CO)(B)(L)) (B = PPh3, AsPh3, py or pip; L monobasic tridentate Schiff base) have been synthesized by the reaction of equimolar amounts of (RuHCl(CO)(EPh3)2(B)) and Schiff bases in benzene. The resulting complexes have been characterized by analytical and spectral (IR, electronic, NMR) data. An octahedral structure has been assigned to all these complexes. The new complexes have been exhibit catalytic activity for the oxidation of benzyl alcohol and cyclohexanol in the presence of N-methylmorpholine-N-oxide as co-oxidant. (author)

  15. Synthesis, Characterization, and Biological Activity of Some Transition Metal Complexes of N-Benzoyl-N′-2-thiophenethiocarbohydrazide

    Directory of Open Access Journals (Sweden)

    Mahendra Yadav

    2012-01-01

    Full Text Available In the present study, Mn(II, Fe(II, Ni(II, and Cu(II complexes of N-benzoyl -N′-2-thiophenethiocarbohydrazide (H2 BTTH have been synthesized and characterized by elemental analysis, magnetic susceptibility measurements, infrared, NMR, electronic, and ESR spectral studies. The complexes were found to have compositions [Mn(H BTTH2], [Ni(BTTH(H2O2], [Cu(BTTH], and [Fe(H BTTH2EtOH]. The antibacterial and antifungal properties of H2 BTTH and its metal complexes have been screened against several bacteria and fungi.

  16. Purification and biochemical characterization of the complete structure of a proteolytically modified beta-2-microglobulin with biological activity

    DEFF Research Database (Denmark)

    Nissen, Mogens Holst; Thim, L; Christensen, M

    1987-01-01

    . (1985) Clin. Chem. 31, 1411-1412; Nissen et al. (1984) Clin. Chim. Acta 141, 41-50]. In the present study we describe the purification and characterization of this modified human serum beta-2-m from patients with small-cell lung cancer. Purified urinary beta-2-m was added to the serum samples incubated...... analyzed by sodium dodecyl sulphate/polyacrylamide gel electrophoresis and analytical isoelectric focusing respectively. Amino acid analysis of m-beta-2-m revealed that the protein is missing one lysine residue compared to the composition deduced from the cDNA sequence of beta-2-m. Amino acid sequence...

  17. Characterization of biological and antigenic properties of raccoon dog and blue fox parvoviruses: a monoclonal antibody study.

    Science.gov (United States)

    Veijalainen, P

    1988-03-01

    Parvovirus isolates from blue foxes and raccoon dogs were characterized by studying their haemagglutination properties, host range in vitro and antigenic structure. In all 3 characters, raccoon dog parvovirus resembled canine parvovirus (CPV), while blue fox parvovirus was similar to mink enteritis virus (MEV). Monoclonal antibodies (MAbs) were prepared against both viruses. Raccoon dog parvovirus, while resembling CPV, had a unique antigenic site which could be specified by MAbs. The pattern of MAbs prepared against blue fox parvovirus indicated that it is a member of Type 2 MEV. PMID:2836994

  18. Synthesis and Spectroscopic Characterization of Some New Axially Ligated Indium(III Macrocyclic Complexes and Their Biological Activities

    Directory of Open Access Journals (Sweden)

    Gauri D. Bajju

    2014-01-01

    Full Text Available The synthesis and spectroscopic characterization of new axially ligated indium(III porphyrin complexes were reported. Chloroindium(III porphyrin (TPPIn-Cl was obtained in good yield by treating the corresponding free base with indium trichloride. The action of the different phenols on chloroderivatives (TPPIn-Cl led to the corresponding phenolato complexes (TPPIn-X. These derivatives were characterized on the basis of mass spectrometry, 1H-NMR, IR, and UV-visible data. The separation and isolation of these derivatives have been achieved through chromatography. The spectral properties of free base porphyrin and its corresponding metallated and axially ligated indium(III porphyrin compounds were compared with each other. A detailed analysis of UV-Vis, 1H-NMR, and IR suggested the transformation from free base porphyrin to indium(III porphyrin. Besides, 13C-NMR and fluorescence spectra were also reported and interpreted. The stability of these derivatives has also been studied through thermogravimetry. The complexes were also screened for anticancerous activities. Among all the complexes, 4-MePhO-InTPP shows highest anticancerous activity. The title complexe, TPPIn-X (where X = different phenolates, represents a five-coordinate indium(III porphyrin complex in a square-pyramidal geometry with the phenolate anion as the axial ligand.

  19. Original pedagogues

    DEFF Research Database (Denmark)

    Schmidt, Christina Haandbæk

    professional autonomy in exercising judgment concerning pedagogical situations. To understand how pedagogues can struggle the distention between being competent and being original the project draws on both Michel Foucault and Charles Taylor as two incompatible theories on modern identity. The study is......Original pedagogues Distention between competences and originality By Christina Haandbæk Schmidt, ph. d. student Aarhus University, Denmark This presentation concerns a Ph.D. project (Sept. 2012 –Sept. 2015) about pedagogues in day care facilities and their struggles to develop and retain...... pedagogues and in everyday life in daycare facilities. The competence term includes at least two discourses of interest; a pedagogical competence discourse and a political jurisdiction discourse which forms a distention between authenticity and competence. In order that pedagogues may regain their autonomy I...

  20. Development of nanocomposite based on hydroxyethylmethacrylate and functionalized fumed silica: mechanical, chemico-physical and biological characterization.

    Science.gov (United States)

    D'Agostino, Antonella; Errico, Maria Emanuela; Malinconico, Mario; De Rosa, Mario; Avella, Maurizio; Schiraldi, Chiara

    2011-03-01

    In this research work organic/inorganic nano composites were synthesized from poly-2-hydroxyethylmethacrylate and properly modified silica nanoparticles by in situ polymerization. In particular, fumed nanosilica was functionalized with methacryloylpropyltrimetoxy silane (MPTMS) in order to obtain a more homogeneous, reliable and mechanically performing nano composite. For comparison, nano composites with non functionalized silica were also prepared. Scanning electron microscopy was performed in order to visualize the effects of functionalization on the mode and state of dispersion. This analysis demonstrated that MPTMS grafted onto silica surface acts as an effective coupling agent and assures a good dispersion and distribution of nanoparticles as well as a strong nano particle/matrix interfacial adhesion. As a result of strong interactions occurring between phases, a pronounced increase of the glass transition temperature and mechanical parameters were recorded. Finally, these novel nano composites were seeded with murine fibroblast and human mesenchymal stem cells, and observed in time-lapse experiments proving an effective biological response. PMID:21221729

  1. Production, characterization and biological features of bacterial cellulose from scum obtained during preparation of sugarcane jaggery (gur).

    Science.gov (United States)

    Khattak, Waleed Ahmad; Khan, Taous; Ul-Islam, Mazhar; Ullah, Muhammad Wajid; Khan, Shaukat; Wahid, Fazli; Park, Joong Kon

    2015-12-01

    Bacterial cellulose (BC) has been given an ample attention due to its high potential for many industrial applications. However, the high cost of production medium has hindered the commercialization of BC. Several efforts have been made to explore cheep, raw and waste sources for BC production. The current study aims at investigating the BC production from a waste source; the scum obtained during preparation of sugarcane jaggery or gur (JS). JS was five-fold diluted with distilled water and used as culturing medium without any additional nutrients. The production of BC was monitored till 10th days of cultivation both at static and shaking culturing conditions. A maximum of 2.51 g/L and 2.13 g/L BC was produced in shaking and static cultures, respectively, after 10 days. The structure features of BC were confirmed through FTIR, XRD and SEM analysis. The chemical structure and physical appearance strongly resembled the BC produced form synthetic media. It was noteworthy that the BC produced from JS showed higher mechanical and thermal properties. The cell adhesion and proliferation capabilities of produced BC were observed that depicted definite animal cell adhesion without any considerable cytotoxicity. Besides providing an economically feasible way for BC production, the high level of physico-mechanical and biological properties insured the importance in medical fields. PMID:26604413

  2. Integration of biological ion channels onto optically addressable micro-fluidic electrode arrays for single molecule characterization.

    Energy Technology Data Exchange (ETDEWEB)

    Brozik, Susan Marie; Frink, Laura J. Douglas; Bachand, George David; Keller, David J. (University of New Mexico, Albuquerque, NM); Patrick, Elizabeth L.; Marshall, Jason A. (University of New Mexico, Albuquerque, NM); Ortiz, Theodore P. (University of New Mexico, Albuquerque, NM); Meyer, Lauren A. (University of New Mexico, Albuquerque, NM); Davis, Ryan W. (University of New Mexico, Albuquerque, NM); Brozik, James A. (University of New Mexico, Albuquerque, NM); Flemming, Jeb Hunter

    2004-12-01

    The challenge of modeling the organization and function of biological membranes on a solid support has received considerable attention in recent years, primarily driven by potential applications in biosensor design. Affinity-based biosensors show great promise for extremely sensitive detection of BW agents and toxins. Receptor molecules have been successfully incorporated into phospholipid bilayers supported on sensing platforms. However, a collective body of data detailing a mechanistic understanding of membrane processes involved in receptor-substrate interactions and the competition between localized perturbations and delocalized responses resulting in reorganization of transmembrane protein structure, has yet to be produced. This report describes a systematic procedure to develop detailed correlation between (recognition-induced) protein restructuring and function of a ligand gated ion channel by combining single molecule fluorescence spectroscopy and single channel current recordings. This document is divided into three sections: (1) reported are the thermodynamics and diffusion properties of gramicidin using single molecule fluorescence imaging and (2) preliminary work on the 5HT{sub 3} serotonin receptor. Thirdly, we describe the design and fabrication of a miniaturized platform using the concepts of these two technologies (spectroscopic and single channel electrochemical techniques) for single molecule analysis, with a longer term goal of using the physical and electronic changes caused by a specific molecular recognition event as a transduction pathway in affinity based biosensors for biotoxin detection.

  3. Roles of biologic breast tissue composition and quantitative image analysis of mammographic images in breast tumor characterization

    Science.gov (United States)

    Drukker, Karen; Giger, Maryellen L.; Duewer, Fred; Malkov, Serghei; Flowers, Christopher I.; Joe, Bonnie; Kerlikowske, Karla; Drukteinis, Jennifer S.; Shepherd, John

    2014-03-01

    Purpose. Investigate whether knowledge of the biologic image composition of mammographic lesions provides imagebased biomarkers above and beyond those obtainable from quantitative image analysis (QIA) of X-ray mammography. Methods. The dataset consisted of 45 in vivo breast lesions imaged with the novel 3-component breast (3CB) imaging technique based on dual-energy mammography (15 malignant, 30 benign diagnoses). The 3CB composition measures of water, lipid, and protein thicknesses were assessed and mathematical descriptors, `3CB features', were obtained for the lesions and their periphery. The raw low-energy mammographic images were analyzed with an established in-house QIA method obtaining `QIA features' describing morphology and texture. We investigated the correlation within the `3CB features', within the `QIA features', and between the two. In addition, the merit of individual features in the distinction between malignant and benign lesions was assessed. Results. Whereas many descriptors within the `3CB features' and `QIA features' were, often by design, highly correlated, correlation between descriptors of the two feature groups was much weaker (maximum absolute correlation coefficient 0.58, pappeared equally well-suited for the distinction between malignant and benign lesions, with maximum area under the ROC curve 0.71 for a protein feature (3CB) and 0.71 for a texture feature (QIA). Conclusions. In this pilot study analyzing the new 3CB imaging modality, knowledge of breast tissue composition appeared additive in combination with existing mammographic QIA methods for the distinction between benign and malignant lesions.

  4. Synthesis, characterization and biological activity of 2-methyl-3-aminoquinazolin-4(3H)-ones Schiff bases

    International Nuclear Information System (INIS)

    The 3-amino-2-methyl quinazoline/6-bromo-2-methyl quinazoline-4(3H)-ones, 2a,b, on treatment with 2,3-indolinedione in the presence of traces of glacial acetic acid yielded 3-{(2'-oxo-1',2'-dihydroindole-3'-ylidene)amino}-2-methylquinazolin/6-bromo -2-methylquinazolin-4-(3H)- ones, 3a,b, which on condensation with various secondary amines and formaldehyde in ethanol afforded title compounds 3-{(1'-alkyl/arylaminomethyl-2'-oxo-1',2'-dihydroindole-3'-ylidene) amino}-2-methyl-6-quinazolin-4-(3H)-ones, 4a1-6 and 4b1-6. C, H, N analysis, infrared spectroscopy, 1H NMR, and mass spectroscopy allowed the identification of the synthesized compounds, which were investigated for their antimicrobial, analgesic, anti-inflammatory and antihelmintic activities. The results of the biological activities revealed that the compounds 4a3, 4a4 and 4b6 exhibited significant analgesic and anti-inflammatory activities. Compounds 4b5 and 4b6 showed antihelmintic activity when tested against Pheretima posthuma. (author)

  5. Biological and Biochemical Potential of Sea Snake Venom and Characterization of Phospholipase A2 and Anticoagulation Activity.

    Science.gov (United States)

    Damotharan, Palani; Veeruraj, Anguchamy; Arumugam, Muthuvel; Balasubramanian, Thangavel

    2016-03-01

    This study is designed to isolate and purify a novel anti-clotting protein component from the venom of Enhydrina schistosa, and explore its biochemical and biological activities. The active protein was purified from the venom of E. schistosa by ion-exchange chromatography using DEAE-cellulose. The venom protein was tested by various parameters such as, proteolytic, haemolytic, phospholipase and anti-coagulant activities. 80 % purity was obtained in the final stage of purification and the purity level of venom was revealed as a single protein band of about 44 kDa in SDS-polyacrylamide electrophoresis under reducing conditions. The results showed that the Potent hemolytic activity was observed against cow, goat, chicken and human (A, B and O positive) erythrocytes. Furthermore, the clotting assays showed that the venom of E. schistosa significantly prolonged in activated partial thromboplastin time, thrombin time, and prothrombin time. Venomous enzymes which hydrolyzed casein and gelatin substrate were found in this venom protein. Gelatinolytic activity was optimal at pH 5-9 and (1)H NMR analysis of purified venom was the base line information for the structural determination. These results suggested that the E. schistosa venom holds good promise for the development of novel lead compounds for pharmacological applications in near future. PMID:26855489

  6. Characterization of water reservoirs affected by acid mine drainage: geochemical, mineralogical, and biological (diatoms) properties of the water.

    Science.gov (United States)

    Valente, T; Rivera, M J; Almeida, S F P; Delgado, C; Gomes, P; Grande, J A; de la Torre, M L; Santisteban, M

    2016-04-01

    This work presents a combination of geochemical, mineralogical, and biological data obtained in water reservoirs located in one of the most paradigmatic mining regions, suffering from acid mine drainage (AMD) problems: the Iberian Pyrite Belt (IPB). Four water reservoirs located in the Spanish sector of the IBP, storing water for different purposes, were selected to achieve an environmental classification based on the effects of AMD: two mining dams (Gossan and Águas Ácidas), a reservoir for industrial use (Sancho), and one with water used for human supply (Andévalo). The results indicated that the four reservoirs are subject to the effect of metallic loads from polluted rivers, although with different levels: Águas Ácidas > Gossan > Sancho ≥ Andévalo. In accordance, epipsammic diatom communities have differences in the respective composition and dominant taxa. The dominant diatoms in each reservoir indicated acid water: Pinnularia acidophila and Pinnularia aljustrelica were found in the most acidic dams (Gossan and Águas Ácidas, with pH <3), Pinnularia subcapitata in Sancho (pH 2.48-5.82), and Eunotia exigua in Andévalo (pH 2.34-6.15). PMID:26032451

  7. Characterization of the Geographical and Varietal Origin of Wheat and Bread by Means of Nuclear Magnetic Resonance (NMR), Isotope Ratio Mass Spectrometry (IRMS) Methods and Chemometrics: A Review

    OpenAIRE

    Francesco Longobardi; Daniela Sacco; Grazia Casiello; Andrea Ventrella; Antonio Sacco

    2015-01-01

    In recent years, food authentication, in terms of geographical and varietal/animal origins, is considered of primary importance at all levels of the production process. Therefore, it is clear that there is an economic basis to develop analytical methods able to certify the declared origin of food products, in order to protect consumers and honest producers from fraud and unfair competition, respectively; consequently, during recent years, several food authentication techniques have been propo...

  8. Biological characterization of the colombian isolate Heterorhabditis sp. SL0708 (Rhabditida: Heterorhabditidae - doi: 10.4025/actascibiolsci.v35i3.16034

    Directory of Open Access Journals (Sweden)

    Maria Camila Mejia Torres

    2013-08-01

    Full Text Available Heterorhabditis sp SL0708 (Rhabditida: Heterorhabditidae is a native entomopathogenic nematode from Alcalá, Valle del Cauca (Colombia, a natural enemy of insects that can be used for controlling Plutella xylostella L, Conotrachelus psidii Marshall and Delia platura (Meigen; however its biological characterization is unknown. In order to know about the infective capacity of the isolate, tests were made with last instar larvae of Galleria mellonella (Lepidoptera: Pyrallidae on penetration, one by one, exposure time, dose response and foraging strategy. The average infecting juveniles (IJ entering larvae was 3 (1.5%. In the one-on-one test, larvae mortality ranged between 8.3 and 16.7%. There was no significant difference (p Heterorhabditis sp. SL0708 presented a cruiser foraging strategy, which indicates that it can be used for sessile or cryptic hosts.  

  9. Understanding the fouling of UF/MF hollow fibres of biologically treated wastewaters using advanced EfOM characterization and statistical tools

    KAUST Repository

    Filloux, Emmanuelle

    2012-08-01

    Five secondary effluents and a river water source were characterized using size exclusion chromatography (LC-OCD-UVD-OND) and emission-excitation matrix (EEM) fluorescence spectroscopy in order to identify the major effluent organic matter (EfOM) fractions responsible for membrane fouling. This study showed the feasibility of coupling fluorescence EEM and LC-OCD-UVD-OND to investigate the fouling potential as well as a means to differentiate natural organic matter (NOM) from EfOM. The secondary effluents and river water showed a significant difference in organic matter characteristics and fouling potential, highlighting the importance of biological processes and the feed water source on EfOM characteristics and fouling potential. On the basis of statistical analysis, protein-like substances were found to be highly correlated to the fouling potential of secondary effluents. © 2012 Elsevier Ltd.

  10. Biophysical and biological characterization of a new line of hyaluronan-based dermal fillers: A scientific rationale to specific clinical indications.

    Science.gov (United States)

    La Gatta, Annalisa; De Rosa, Mario; Frezza, Maria Assunta; Catalano, Claudia; Meloni, Marisa; Schiraldi, Chiara

    2016-11-01

    Chemico-physical and biological characterization of hyaluronan-based dermal fillers is of key importance to differentiate between numerous available products and to optimize their use. These studies on fillers are nowadays perceived as a reliable approach to predict their performance in vivo. The object of this paper is a recent line of hyaluronic acid (HA)-based dermal fillers, Aliaxin®, available in different formulations that claim a complete facial restoration. The aim of the study is to provide biophysical and biological data that may support the clinical indications and allow to predict performance possibly with respect to similar available products. Aliaxin® formulations were tested for their content in soluble HA, water uptake capacity, rheological behavior, stability to enzymatic degradation, and for in vitro capacity to stimulate extracellular matrix components production. The formulations were found to contain a low amount of soluble HA and were equivalent to each other regarding insoluble hydrogel concentration. The different crosslinking degree declared by the producer was consistent with the trend in water uptake capacity, rigidity, viscosity. No significant differences in stability to enzymatic hydrolysis were found. In vitro experiments, using a full thickness skin model, showed an increase in collagen production in the dermoepidermal junction. Results support the claims of different clinical indications, the classification of products regarding hydro-, lift-action and the specifically suggested needle gauge for the delivery. The biological outcomes also support products effectiveness in skin structure restoration. These data predicted a better performance regarding hydro-action, tissue integration, clinical management during delivery, and a high durability of the aesthetic effect when compared to data on marketed similar products. PMID:27524055

  11. Synthesis and spectral characterization of 2'-hydroxy chalconate complexes of ruthenium(II) and their catalytic and biological applications

    Science.gov (United States)

    Muthukumar, M.; Viswanathamurthi, P.; Natarajan, K.

    2008-10-01

    The reactions of [RuHCl(CO)(B)(EPh 3) 2] (B = EPh 3 or pyridine; E = P or As) and 2'-hydroxychalcones in 1:2 ratio led to the formation of [Ru(CO)(B)(L) 2] (B = PPh 3, AsPh 3 or Py; L = 2'-hydroxychalcones). The new complexes have been characterized by analytical and spectral (IR, electronic and 1H NMR) data. They have been assigned an octahedral structure. The new complexes were found to catalyze the oxidation of alcohols to aldehydes using N-methylmorpholine- N-oxide as co-oxidant. All the new complexes were found to be active against bacteria such as E. coli, Salmonella typhi and fungi Aspergillus niger. The activity was compared with standard Streptomycin or Bavistin.

  12. Sol-gel silica-based nanocomposites containing a high PEG amount: Chemical characterization and study of biological properties

    Science.gov (United States)

    Catauro, Michelina; Bollino, Flavia; Gloria, Antonio

    2016-05-01

    The objective of the present study was to synthesize and to characterize Silica/polyethylene glycol (SiO2/PEG) organic-inorganic hybrid materials containing a high polymer amount (60 and 70 wt%) for biomedical applications. Scanning electron microscopy (SEM) showed that the samples are homogeneous on the nanometer scale, confirming that they are nanocomposites. Fourier transform infrared spectroscopy (FT-IR) proved that the materials are class I hybrids because the two phases (SiO2 and PEG) interact by hydrogen bonds. To evaluate the possibility of using them in the biomedical field, the bioactivity and biocompatibility of the synthesized hybrids have been ascertained. The formation of a hydroxyapatite layer was observed on the hybrid surface by SEM/EDX and FTIR after soaking in simulated body fluid (SBF). Moreover, their biocompatibility was assessed by performing WST-8 cytotoxicity assay in vitro.

  13. A novel polysaccharide isolated from mulberry fruits (Murus alba L.) and its selenide derivative: structural characterization and biological activities.

    Science.gov (United States)

    Chen, Chun; Zhang, Bin; Fu, Xiong; Liu, Rui Hai

    2016-06-15

    A novel polysaccharide (MFP3P) was isolated from Murus alba L. through the hot water extraction method followed by chromatographic purification. The chemical structure of MFP3P was elucidated by acid hydrolysis, Smith degradation and methylation analysis, along with FT-IR, GC-MS, (1)H and (13)C NMR spectroscopy. Its morphological properties were further characterized by SEM and AFM. The selenide of the polysaccharide (MFP3P-Se) was obtained by the Na2SeO3/BaCl2 method. The antioxidant properties showed that MFP3P-Se exhibited higher peroxy radical-scavenging capacity than MFP3P in vitro. Moreover, MFP3P-Se had more significant hypoglycemic effects than MFP3P through promoting pancreatic cell proliferation and increasing glucose metabolism and insulin secretion. PMID:27241036

  14. Promising Biological Indicator of Heavy Metal Pollution: Bioluminescent Bacterial Strains Isolated and Characterized from Marine Niches of Goa, India.

    Science.gov (United States)

    Thakre, Neha A; Shanware, Arti S

    2015-09-01

    In present study, several marine water samples collected from the North Goa Beaches, India for isolation of luminescent bacterial species. Isolates obtained labelled as DP1-5 and AB1-6. Molecular characterization including identification of a microbial culture using 16S rRNA gene based molecular technique and phylogenetic analysis confirmed that DP3 & AB1 isolates were Vibrio harveyi. All of the isolates demonstrated multiple metal resistances in terms of growth, with altered luminescence with variable metal concentration. Present investigations were an attempt towards exploring and reporting an updated diversity of bioluminescent bacterial species from various sites around the Goa, India which would be explored in future for constructing luminescence based biosensor for efficiently monitoring the level of hazardous metals in the environment. PMID:26063943

  15. Electrochemically assisted deposition of hydroxyapatite on Ti6Al4V substrates covered by CVD diamond films - Coating characterization and first cell biological results.

    Science.gov (United States)

    Strąkowska, Paulina; Beutner, René; Gnyba, Marcin; Zielinski, Andrzej; Scharnweber, Dieter

    2016-02-01

    Although titanium and its alloys are widely used as implant material for orthopedic and dental applications they show only limited corrosion stability and osseointegration in different cases. The aim of the presented research was to develop and characterize a novel surface modification system from a thin diamond base layer and a hydroxyapatite (HAp) top coating deposited on the alloy Ti6Al4V widely used for implants in contact with bone. This coating system is expected to improve both the long-term corrosion behavior and the biocompatibility and bioactivity of respective surfaces. The diamond base films were obtained by Microwave Plasma Assisted Chemical Vapor Deposition (MW-PACVD); the HAp coatings were formed in aqueous solutions by electrochemically assisted deposition (ECAD) at varying polarization parameters. Scanning electron microscopy (SEM), Raman microscopy, and electrical conductivity measurements were applied to characterize the generated surface states; the calcium phosphate coatings were additionally chemically analyzed for their composition. The biological properties of the coating system were assessed using hMSC cells analyzing for cell adhesion, proliferation, and osteogenic differentiation. Varying MW-PACVD process conditions resulted in composite coatings containing microcrystalline diamond (MCD/Ti-C), nanocrystalline diamond (NCD), and boron-doped nanocrystalline diamond (B-NCD) with the NCD coatings being dense and homogeneous and the B-NCD coatings showing increased electrical conductivity. The ECAD process resulted in calcium phosphate coatings from stoichiometric and non-stoichiometric HAp. The deposition of HAp on the B-NCD films run at lower cathodic potentials and resulted both in the highest coating mass and the most homogenous appearance. Initial cell biological investigations showed an improved cell adhesion in the order B-NCD>HAp/B-NCD>uncoated substrate. Cell proliferation was improved for both investigated coatings whereas ALP

  16. Characterization, distribution, biology and impact on Italian walnut orchards of the invasive North-American leafminer Coptodisca lucifluella (Lepidoptera: Heliozelidae).

    Science.gov (United States)

    Bernardo, U; van Nieukerken, E J; Sasso, R; Gebiola, M; Gualtieri, L; Viggiani, G

    2015-04-01

    The leafminer Coptodisca sp. (Lepidoptera: Heliozelidae), recently recorded for the first time in Europe on Italian black and common walnut trees, is shown to be the North-American Coptodisca lucifluella (Clemens) based on morphological (forewing pattern) and molecular (cytochrome oxidase c subunit I sequence) evidence. The phylogenetic relatedness of three species feeding on Juglandaceae suggests that C. lucifluella has likely shifted, within the same host plant family, from its original North-American hosts Carya spp. to Juglans spp. Over the few years since its detection, it has established in many regions in Italy and has become a widespread and dominant invasive species. The leafminer completes three to four generations per year, with the first adults emerging in April-May and mature larvae of the last generation starting hibernation in September-October. Although a high larval mortality was recorded in field observations (up to 74%), the impact of the pest was substantial with all leaves infested at the end of the last generation in all 3 years tested. The distribution of the leafminer in the canopy was homogeneous. The species is redescribed and illustrated, a lectotype is designated and a new synonymy is established. PMID:25630620

  17. Synthesis, characterization, molecular docking and biological studies of self assembled transition metal dithiocarbamates of substituted pyrrole-2-carboxaldehyde.

    Science.gov (United States)

    Nami, Shahab A A; Ullah, Irfan; Alam, Mahboob; Lee, Dong-Ung; Sarikavakli, Nursabah

    2016-07-01

    A series of self assembled 3d transition metal dithiocarbamate, M(pdtc) [where M=Mn(II), Fe(II), Co(II), Ni(II) and Cu(II)] have been synthesized and spectroscopically characterized. The bidentate dithiocarbamate ligand Na2pdtc (Disodium-1,4-phenyldiaminobis (pyrrole-1-sulfino)dithioate) was prepared by insertion reaction of carbondisulfide with Schiff base, N,N'-bis-(1H-pyrrol-2-ylmethylene)-benzene-1,4-diamine (L1) in basic medium. The simple substitution reaction between the metal halide and Na2pdtc yielded the title complexes in moderate yields. However, the in situ procedure gives high yield with the formation of single product as evident by TLC. Elemental analysis, IR, (1)H and (13)C NMR spectra, UV-vis., magnetic susceptibility and conductance measurements were done to characterize the complexes, M(pdtc). All the evidences suggest that the complexes have tetrahedral geometry excepting Cu(II) which is found to be square planar. A symmetrical bidentate coordination of the dithiocarbamato moiety has been observed in all the complexes. The conductivity data show that the complexes are non-electrolyte in nature. The anti-oxidant activity of the ligand, Na2pdtc and its transition metal complexes, M(pdtc) have been carried out using DPPH and Cu(pdtc) was found to be most effective. The anti-microbial activity of the Na2pdtc and M(pdtc) complexes have been carried out and on this basis the molecular docking study of the most effective complex, Cu(pdtc) has also been reported. PMID:27197060

  18. Biological synthesis and characterization of silver nanoparticles using Eclipta alba leaf extract and evaluation of its cytotoxic and antimicrobial potential

    Indian Academy of Sciences (India)

    Paramasivam Premasudha; Mudili Venkataramana; Marriappan Abirami; Periyasamy Vanathi; Kadirvelu Krishna; Ramasamy Rajendran

    2015-08-01

    With increasing global competitions there is a growing need to develop environmentally benevolent nanoparticles without the use of toxic chemicals. The biosynthesis of silver nanoparticles (AgNPs) using plant extracts became one of the potential areas of research. The bioreduction of metal ion is quite rapid, readily perform at room temperature and easily scale up. The present study describes a rapid and eco-friendly synthesis of AgNPs using Eclipta alba plant extract in a single pot process. The efficiency and the influence of various process variables in the biosynthesis of AgNPs analysed include redundant concentration, temperature and time. AgNPs were rapidly synthesized using aqueous leaf extract of E. alba and was observed when the medium turned to brown colour with the addition of silver ion. Biosynthesized AgNPs were characterized by the help of UV–visible spectroscopy for their stability and physicochemical parameters were studied by dynamic light scattering, Fourier transform infrared spectroscopy, X-ray diffraction, scanning electron microscopy. The obtained results confirmed that recorded UV spectra show the characteristic surface plasmon resonance band for AgNPs in the range of 400–440 nm and physiochemical structural analysis shown that obtained AgNPs were crystalline in nature. Further, cytotoxic and antimicrobial activities of biosynthesized AgNPs against RAW 254.7, MCF-7 and Caco-2 cells as well as Gram positive and Gram negative bacteria were assessed. In-vitro cytotoxicity activity of characterized AgNPs against tested cell lines showed significant anti-cell-proliferation effect in nanomolar concentrations. The antibacterial activity of synthesized AgNPs showed effective inhibitory activity against human pathogens, including, Escherichia coli, Staphylococcus aureus and Pseudomonas aeruginosa. Thus, the significant outcome of this study would help to formulate value added herbal-based nano-materials in biomedical and nanotechnology industries.

  19. Laccase on Black Pearl 2000 modified glassy carbon electrode: Characterization of direct electron transfer and biological sensing properties for pyrocatechol

    International Nuclear Information System (INIS)

    Highlights: ► Laccase can complete direct electron transfer process on BP2000 matrices. ► Laccase immobilized on BP2000 matrices has catalytic oxidation effect to pyrocatechol. ► A pyrocatechol biosensor has constructed been using Nafion/Lac-BP2000/GC electrode. ► Detection limit and linear range of the biosensor are 0.003 mM and 0.003–5.555 mM. - Abstract: In this paper, it was found that Laccase (Lac) could be stably immobilized on the glassy carbon electrode modified with Black Pearl 2000 (BP2000) and Nafion by a simple technique. The adsorption behavior of Lac immobilized on BP2000 matrix was characterized by environment scanning electron microscope (ESEM), ultraviolet–visible (UV–vis) and Fourier transform infrared (FTIR), which demonstrated that BP2000 could facilitate the electron exchange between the active center of Lac and modified electrode. The direct electrochemistry and electrocatalysis behavior of Lac on the modified electrode were characterized by cyclic voltammogram (CV) which indicated that Lac immobilized on the modified electrode displayed a direct, nearly reversible and surface-controlled redox reaction with an enhanced electron-transfer rate constant of 1.940 s−1 at the scan rate of 100 mV s−1 in 0.1 M phosphate buffer solution (PBS) (pH 7.0). Furthermore, it was also discovered that, in the presence of O2, Lac immobilized on the modified electrode exhibited the electrocatalytic response to pyrocatechol, and the kinetic apparent Michaelis-constant (KMapp) obtained from the Lineweaver–Burk equation was 1.79 mM. The detection limit, linear range and sensitivity of the Lac biosensor were 0.003 mM, 0.003–5.555 mM and 99.84 μA mM−1 cm−2, respectively.

  20. Biological characterization of radiation exposure and dose estimates for inhaled uranium milling effluents. Annual progress report, April 1981-March 1982

    International Nuclear Information System (INIS)

    The problems addressed are the protection of uranium will workers from occupational exposure to uranium through routine bioassay programs and the assessment of accidental worker exposures. Comparisons of chemical properties and the biological behavior of refined uranium ore (yellowcake) are made to identify important properties that influence uranium distribution patterns among organs. These studies will facilitate calculations of organ doses for specific exposures and associated health risk estimates and will identify important bioassay procedures to improve evaluations of human exposures. Sampling of airborne yellowcake at four uranium mills showed that aerosols were heterogeneous, changed with time and contained approx. 50% of the airborne uranium in particles greater than 12 μm aerodynamic diameter. Results are related to specific packaging steps and to predictions of appreciable upper respiratory tract deposition rates for the aerosols, if inhaled by a worker without respiratory protection. Previously used in vitro dissolution techniques were evaluated and the uses of the results for interpreting urinary bioassay data are described. Preliminary results from an inhalation experiment using rats indicate that the clearance patterns of inhaled uranium from lung agreed quantitatively with results from in vitro dissolution and infrared analyses of the yellowcake used. Preliminary results from an experiment to simulate contamination of a wound by yellowcake showed that more of the implanted dose of a less soluble form of yellowcake was retained at the wound site than of a more soluble form at 32 days after implantation. The results did not quantitatively agree with in vitro dissolution results. A two-year study of yellowcake from two mills was initiated. Twenty Beagle dogs were exposed by nose-only inhalation to a more soluble form of yellowcake and 20 to a less soluble form