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Sample records for biological processes underlying

  1. Introductory Biology Textbooks Under-Represent Scientific Process

    Directory of Open Access Journals (Sweden)

    Dara B. Duncan

    2011-08-01

    Full Text Available Attrition of undergraduates from Biology majors is a long-standing problem. Introductory courses that fail to engage students or spark their curiosity by emphasizing the open-ended and creative nature of biological investigation and discovery could contribute to student detachment from the field. Our hypothesis was that introductory biology books devote relatively few figures to illustration of the design and interpretation of experiments or field studies, thereby de-emphasizing the scientific process.To investigate this possibility, we examined figures in six Introductory Biology textbooks published in 2008. On average, multistep scientific investigations were presented in fewer than 5% of the hundreds of figures in each book. Devoting such a small percentage of figures to the processes by which discoveries are made discourages an emphasis on scientific thinking. We suggest that by increasing significantly the illustration of scientific investigations, textbooks could support undergraduates’ early interest in biology, stimulate the development of design and analytical skills, and inspire some students to participate in investigations of their own.

  2. Dynamics of Intracellular Polymers in Enhanced Biological Phosphorus Removal Processes under Different Organic Carbon Concentrations

    OpenAIRE

    Lizhen Xing; Li Ren; Bo Tang,; Guangxue Wu; Yuntao Guan

    2013-01-01

    Enhanced biological phosphorus removal (EBPR) may deteriorate or fail during low organic carbon loading periods. Polyphosphate accumulating organisms (PAOs) in EBPR were acclimated under both high and low organic carbon conditions, and then dynamics of polymers in typical cycles, anaerobic conditions with excess organic carbons, and endogenous respiration conditions were examined. After long-term acclimation, it was found that organic loading rates did not affect the yield of PAOs and the app...

  3. Dynamics of Intracellular Polymers in Enhanced Biological Phosphorus Removal Processes under Different Organic Carbon Concentrations

    Directory of Open Access Journals (Sweden)

    Lizhen Xing

    2013-01-01

    Full Text Available Enhanced biological phosphorus removal (EBPR may deteriorate or fail during low organic carbon loading periods. Polyphosphate accumulating organisms (PAOs in EBPR were acclimated under both high and low organic carbon conditions, and then dynamics of polymers in typical cycles, anaerobic conditions with excess organic carbons, and endogenous respiration conditions were examined. After long-term acclimation, it was found that organic loading rates did not affect the yield of PAOs and the applied low organic carbon concentrations were advantageous for the enrichment of PAOs. A low influent organic carbon concentration induced a high production of extracellular carbohydrate. During both anaerobic and aerobic endogenous respirations, when glycogen decreased to around 80 ± 10 mg C per gram of volatile suspended solids, PAOs began to utilize polyphosphate significantly. Regressed by the first-order reaction model, glycogen possessed the highest degradation rate and then was followed by polyphosphate, while biomass decay had the lowest degradation rate.

  4. Branching processes in biology

    CERN Document Server

    Kimmel, Marek

    2015-01-01

    This book provides a theoretical background of branching processes and discusses their biological applications. Branching processes are a well-developed and powerful set of tools in the field of applied probability. The range of applications considered includes molecular biology, cellular biology, human evolution and medicine. The branching processes discussed include Galton-Watson, Markov, Bellman-Harris, Multitype, and General Processes. As an aid to understanding specific examples, two introductory chapters, and two glossaries are included that provide background material in mathematics and in biology. The book will be of interest to scientists who work in quantitative modeling of biological systems, particularly probabilists, mathematical biologists, biostatisticians, cell biologists, molecular biologists, and bioinformaticians. The authors are a mathematician and cell biologist who have collaborated for more than a decade in the field of branching processes in biology for this new edition. This second ex...

  5. Discovering biological progression underlying microarray samples.

    Directory of Open Access Journals (Sweden)

    Peng Qiu

    2011-04-01

    Full Text Available In biological systems that undergo processes such as differentiation, a clear concept of progression exists. We present a novel computational approach, called Sample Progression Discovery (SPD, to discover patterns of biological progression underlying microarray gene expression data. SPD assumes that individual samples of a microarray dataset are related by an unknown biological process (i.e., differentiation, development, cell cycle, disease progression, and that each sample represents one unknown point along the progression of that process. SPD aims to organize the samples in a manner that reveals the underlying progression and to simultaneously identify subsets of genes that are responsible for that progression. We demonstrate the performance of SPD on a variety of microarray datasets that were generated by sampling a biological process at different points along its progression, without providing SPD any information of the underlying process. When applied to a cell cycle time series microarray dataset, SPD was not provided any prior knowledge of samples' time order or of which genes are cell-cycle regulated, yet SPD recovered the correct time order and identified many genes that have been associated with the cell cycle. When applied to B-cell differentiation data, SPD recovered the correct order of stages of normal B-cell differentiation and the linkage between preB-ALL tumor cells with their cell origin preB. When applied to mouse embryonic stem cell differentiation data, SPD uncovered a landscape of ESC differentiation into various lineages and genes that represent both generic and lineage specific processes. When applied to a prostate cancer microarray dataset, SPD identified gene modules that reflect a progression consistent with disease stages. SPD may be best viewed as a novel tool for synthesizing biological hypotheses because it provides a likely biological progression underlying a microarray dataset and, perhaps more importantly, the

  6. Mathematical modeling of biological processes

    CERN Document Server

    Friedman, Avner

    2014-01-01

    This book on mathematical modeling of biological processes includes a wide selection of biological topics that demonstrate the power of mathematics and computational codes in setting up biological processes with a rigorous and predictive framework. Topics include: enzyme dynamics, spread of disease, harvesting bacteria, competition among live species, neuronal oscillations, transport of neurofilaments in axon, cancer and cancer therapy, and granulomas. Complete with a description of the biological background and biological question that requires the use of mathematics, this book is developed for graduate students and advanced undergraduate students with only basic knowledge of ordinary differential equations and partial differential equations; background in biology is not required. Students will gain knowledge on how to program with MATLAB without previous programming experience and how to use codes in order to test biological hypothesis.

  7. Information processing in biology

    OpenAIRE

    Ramalho, Tiago

    2015-01-01

    To survive, organisms must respond appropriately to a variety of challenges posed by a dynamic and uncertain environment. The mechanisms underlying such responses can in general be framed as input-output devices which map environment states (inputs) to associated responses (output. In this light, it is appealing to attempt to model these systems using information theory, a well developed mathematical framework to describe input-output systems. Under the information theoretical perspective,...

  8. Biological indicators and sterilization processes

    International Nuclear Information System (INIS)

    A review is given of biological indicators, e.g. bacterial spores, used for monitoring the efficiency of sterilization processes. The choice of a suitable biological indicator depending on its resistance to heat sterilization, ionizing radiation and gaseous sterilization is discussed. Factors affecting the reliability of biological indicators are also discussed including genotypically determined resistance, environmental influences during growth and sporulation, the influence of the environment during storage and sterilization and the influence of recovery conditions. (U.K.)

  9. Biological and physical processes influencing sea ice, under-ice algae, and dimethylsulfoniopropionate during spring in the Canadian Arctic Archipelago

    Science.gov (United States)

    Galindo, V.; Levasseur, M.; Mundy, C. J.; Gosselin, M.; Tremblay, J.-É.; Scarratt, M.; Gratton, Y.; Papakiriakou, T.; Poulin, M.; Lizotte, M.

    2014-06-01

    This study presents temporal variations in concentrations of chlorophyll a (Chl a), particulate and dissolved dimethylsulfoniopropionate (DMSPp and DMSPd) in the sea ice and underlying water column in the Canadian Arctic Archipelago during the spring of 2010 and 2011. During both years, bottom ice Chl a, DMSPp and DMSPd concentrations were high (up to 1328 µg L-1, 15,082 nmol L-1, and 6110 nmol L-1, respectively) in May and decreased thereafter. The release of bottom ice algae and DMSPp in the water column was gradual in 2010 and rapid (8 days) in 2011. Bottom brine drainage during the presnowmelt period in 2010 and a rapid loss of the snow cover in 2011 coinciding with rain events explain most of the difference between the 2 years. During both years, less than 13% of the DMSPd lost from the ice was detected in the water column, suggesting a rapid microbial consumption. An under-ice diatom bloom developed in both years. In 2010, the bloom was dominated by centric diatoms while in 2011 pennates dominated, likely reflecting seeding by ice algae following the faster snowmelt progression induced by rainfall events in 2011. Both under-ice blooms were associated with high DMSPp concentrations (up to 185 nmol L-1), but pennate diatoms showed DMSPp/Chl a ratios twice higher than centrics. These results highlight the key role of snowmelt and precipitation on the temporal pattern of ice-DMSP release to the water column and on the timing, taxonomic composition, and DMSP content of phytoplankton under-ice blooms in the Arctic.

  10. Adaptive multiscale biological signal processing

    OpenAIRE

    Testoni, Nicola

    2008-01-01

    Biological processes are very complex mechanisms, most of them being accompanied by or manifested as signals that reflect their essential characteristics and qualities. The development of diagnostic techniques based on signal and image acquisition from the human body is commonly retained as one of the propelling factors in the advancements in medicine and biosciences recorded in the recent past. It is a fact that the instruments used for biological signal and image rec...

  11. Stochastic processes in cell biology

    CERN Document Server

    Bressloff, Paul C

    2014-01-01

    This book develops the theory of continuous and discrete stochastic processes within the context of cell biology.  A wide range of biological topics are covered including normal and anomalous diffusion in complex cellular environments, stochastic ion channels and excitable systems, stochastic calcium signaling, molecular motors, intracellular transport, signal transduction, bacterial chemotaxis, robustness in gene networks, genetic switches and oscillators, cell polarization, polymerization, cellular length control, and branching processes. The book also provides a pedagogical introduction to the theory of stochastic process – Fokker Planck equations, stochastic differential equations, master equations and jump Markov processes, diffusion approximations and the system size expansion, first passage time problems, stochastic hybrid systems, reaction-diffusion equations, exclusion processes, WKB methods, martingales and branching processes, stochastic calculus, and numerical methods.   This text is primarily...

  12. Biological degradation of chernozems under irrigation

    Directory of Open Access Journals (Sweden)

    Oksana Naydyonova

    2014-12-01

    reduction the number of microorganisms and the diversity of fungi species, repression of cellulose destroying capacity, decrease invertase activity and the rate of humification, intensifying mineralization processes and soil toxicity increasing. Long-term irrigation of ordinary chernozem (Kharkiv Region with fresh water in moderate regime under 7-field crop rotation including alfalfa caused no disturbances of microbial cenosis. In this case parameters of biological indices did not deviate from the level of its non-irrigated analogue. Irrigation with saline water causes more profound negative changes of microbial cenosis of chernozem, which not always can be corrected using agroameliorative techniques. Intensive irrigation with saline water with total mineralization from 1.2 to 2.2 g/l of ordinary chernozem (Odesa Region for 13 years has led to a significant degradation changes in the structure and functioning of its microbial cenosis, its radical alteration such as oppression of microflora, decrease in the number of its main groups by 30 – 40 %, intensification of its mineralization function. Application of agroameliorative techniques (such as annually use of phosphogypsum 3 t/ha or /and complex measures (phosphogypsum 3 t/ha annually + N150P90K60 + manure 18 t/ha of crop rotation enable to regulate of soil biodynamic processes and partially or completely eliminate the phenomena of biological degradation. It was stated that after the cessation of irrigation the degradation changes of ordinary chernozem’s biological properties caused by irrigation with saline water were gradually restored.

  13. Advanced treatment of residual nitrogen from biologically treated coke effluent by a microalga-mediated process using volatile fatty acids (VFAs) under stepwise mixotrophic conditions.

    Science.gov (United States)

    Ryu, Byung-Gon; Kim, Woong; Heo, Sung-Woon; Kim, Donghyun; Choi, Gang-Guk; Yang, Ji-Won

    2015-09-01

    This work describes the development of a microalga-mediated process for simultaneous removal of residual ammonium nitrogen (NH4(+)-N) and production of lipids from biologically treated coke effluent. Four species of green algae were tested using a sequential mixotrophic process. In the first phase-CO2-supplied mixotrophic condition-all microalgae assimilated NH4(+)-N with no evident inhibition. In second phase-volatile fatty acids (VFAs)-supplied mixotrophic condition-removal rates of NH4(+)-N and biomass significantly increased. Among the microalgae used, Arctic Chlorella sp. ArM0029B had the highest rate of NH4(+)-N removal (0.97 mg/L/h) and fatty acid production (24.9 mg/L/d) which were 3.6- and 2.1-fold higher than those observed under the CO2-supplied mixotrophic condition. Redundancy analysis (RDA) indicated that acetate and butyrate were decisive factors for increasing NH4(+)-N removal and fatty acid production. These results demonstrate that microalgae can be used in a sequential process for treatment of residual nitrogen after initial treatment of activated sludge. PMID:25881553

  14. Adaptive filtering in biological signal processing.

    Science.gov (United States)

    Iyer, V K; Ploysongsang, Y; Ramamoorthy, P A

    1990-01-01

    The high dependence of conventional optimal filtering methods on the a priori knowledge of the signal and noise statistics render them ineffective in dealing with signals whose statistics cannot be predetermined accurately. Adaptive filtering methods offer a better alternative, since the a priori knowledge of statistics is less critical, real time processing is possible, and the computations are less expensive for this approach. Adaptive filtering methods compute the filter coefficients "on-line", converging to the optimal values in the least-mean square (LMS) error sense. Adaptive filtering is therefore apt for dealing with the "unknown" statistics situation and has been applied extensively in areas like communication, speech, radar, sonar, seismology, and biological signal processing and analysis for channel equalization, interference and echo canceling, line enhancement, signal detection, system identification, spectral analysis, beamforming, modeling, control, etc. In this review article adaptive filtering in the context of biological signals is reviewed. An intuitive approach to the underlying theory of adaptive filters and its applicability are presented. Applications of the principles in biological signal processing are discussed in a manner that brings out the key ideas involved. Current and potential future directions in adaptive biological signal processing are also discussed. PMID:2180633

  15. Summing up dynamics: modelling biological processes in variable temperature scenarios

    NARCIS (Netherlands)

    Tijskens, L.M.M.; Verdenius, F.

    2000-01-01

    The interest of modelling biological processes with dynamically changing external conditions (temperature, relative humidity, gas conditions) increases. Several modelling approaches are currently available. Among them are approaches like modelling under standard conditions, temperature sum models an

  16. Ecological and biological systems under extreme conditions

    International Nuclear Information System (INIS)

    The behaviour of biological and ecological systems under extreme conditions (high and low temperatures, electromagnetic fields of different frequencies, ultraviolet. X-ray and gamma radiation) is analyzed. The ecosystems of macro- and microalgae living in salt, brackinsh and fresh waters are considered in the evolutional aspect basing on their chemical and biochemical composition taking into account the mechanism of radionuclide uptake by water plant cells, osmotic regulation, water and ice structures, combined water in a living organism. The problems of life-support in cosmic flights and of mastering the planets of the Solar system, for instance Mars and Venus, utilizing some microalgae and bacteria with high adaptive properties are discussed. Abnormal water points and their role in the metabolism of a water plant cell are estimated. The 'life niches' are determined at the temperatures exceeding 100 deg C and the possibility of existence for living organisms in high pressure and temperature is grounded. Attempts are made to change the metabolism of the plant and animal cell by subjecting it to the action of electromagnetic and thermal fields, heavy water, chemical and pharmocological substances changing the structure of bound water. 333 refs.; 79 tabs

  17. Reading biological processes from nucleotide sequences

    Science.gov (United States)

    Murugan, Anand

    Cellular processes have traditionally been investigated by techniques of imaging and biochemical analysis of the molecules involved. The recent rapid progress in our ability to manipulate and read nucleic acid sequences gives us direct access to the genetic information that directs and constrains biological processes. While sequence data is being used widely to investigate genotype-phenotype relationships and population structure, here we use sequencing to understand biophysical mechanisms. We present work on two different systems. First, in chapter 2, we characterize the stochastic genetic editing mechanism that produces diverse T-cell receptors in the human immune system. We do this by inferring statistical distributions of the underlying biochemical events that generate T-cell receptor coding sequences from the statistics of the observed sequences. This inferred model quantitatively describes the potential repertoire of T-cell receptors that can be produced by an individual, providing insight into its potential diversity and the probability of generation of any specific T-cell receptor. Then in chapter 3, we present work on understanding the functioning of regulatory DNA sequences in both prokaryotes and eukaryotes. Here we use experiments that measure the transcriptional activity of large libraries of mutagenized promoters and enhancers and infer models of the sequence-function relationship from this data. For the bacterial promoter, we infer a physically motivated 'thermodynamic' model of the interaction of DNA-binding proteins and RNA polymerase determining the transcription rate of the downstream gene. For the eukaryotic enhancers, we infer heuristic models of the sequence-function relationship and use these models to find synthetic enhancer sequences that optimize inducibility of expression. Both projects demonstrate the utility of sequence information in conjunction with sophisticated statistical inference techniques for dissecting underlying biophysical

  18. Biological processes influencing contaminant release from sediments

    International Nuclear Information System (INIS)

    The influence of biological processes, including bioturbation, on the mobility of contaminants in freshwater sediments is described. Effective mass coefficients are estimated for tubificid oligochaetes as a function of worm behavior and biomass density. The mass transfer coefficients were observed to be inversely proportional to water oxygen content and proportional to the square root of biomass density. The sediment reworking and contaminant release are contrasted with those of freshwater amphipods. The implications of these and other biological processes for contaminant release and i n-situ remediation of soils and sediments are summarized. 4 figs., 1 tab

  19. Biological phosphorus uptake under anoxic and aerobic conditions

    DEFF Research Database (Denmark)

    Kerrn-Jespersen, Jens Peter; Henze, Mogens

    1993-01-01

    Biological phosphorus removal was investigated under anoxic and aerobic conditions. Tests were made to establish whether phosphorus accumulating bacteria can take up phosphate under anoxic conditions and thus utilise nitrate as oxidant. Furthermore, it was tested how the amount of organic matter...... sludge from two different pilot plants incorporating phosphorus removal. The results showed that the phosphorus accumulating bacteria can be divided into two groups in respect of process; one group capable of utilising only oxygen as oxidant and another group capable of utilising both oxygen and nitrate...... taken up by the phosphorus accumulating bacteria during the anaerobic phase affects the total denitrification rate, as well as the rate at which the phosphorus accumulating bacteria take up phosphate under anoxic conditions. The tests were conducted as batch experiments in 21. reactors with activated...

  20. Removal of gaseous toluene by the combination of photocatalytic oxidation under complex light irradiation of UV and visible light and biological process

    International Nuclear Information System (INIS)

    Photocatalysis is a promising technology for treatment of gaseous waste; its disadvantages, however, include causing secondary pollution. Biofiltration has been known as an efficient technology for treatment volatile organic compounds (VOCs) at low cost of maintenance, and produces harmless by-products; its disadvantages, include large volume of bioreactor and slow adaptation to fluctuating concentrations in waste gas. A bench scale system integrated with a photocatalytic oxidation and a biofilter unit for the treatment of gases containing toluene was investigated. The integrated system can effectively oxidize toluene with high removal efficiency. The photocatalytic activity of N-TiO2/zeolite was evaluated by the decomposition of toluene in air under UV and visible light (VL) illumination. The N-TiO2/zeolite has more photocatalytic activity under complex light irradiation of UV and visible light for toluene removal than that of pure TiO2/zeolite under UV or visible light irradiation. N-TiO2/zeolite was characterized by scanning electron microscopy (SEM), X-ray photoelectron spectrum analysis (XPS), Fourier transform infrared spectroscopy (FT-IR), and as-obtained products were identified by means of gas chromatography/mass spectrometry (GC/MS). Results revealed that the photocatalyst was porous and was high photoactive for mineralizing toluene. The high activity can be attributed to the results of the synergetic effects of strong UV and visible light absorption, surface hydroxyl groups. The photocatalytic degradation reaction of toluene with the N-TiO2/zeolite follows Langmuir-Hinshelwood kinetics. Toluene biodegradation rate matches enzymatic oxidation kinetics model.

  1. The reverse control of irreversible biological processes.

    Science.gov (United States)

    Cho, Kwang-Hyun; Joo, Jae Il; Shin, Dongkwan; Kim, Dongsan; Park, Sang-Min

    2016-09-01

    Most biological processes have been considered to be irreversible for a long time, but some recent studies have shown the possibility of their reversion at a cellular level. How can we then understand the reversion of such biological processes? We introduce a unified conceptual framework based on the attractor landscape, a molecular phase portrait describing the dynamics of a molecular regulatory network, and the phenotype landscape, a map of phenotypes determined by the steady states of particular output molecules in the attractor landscape. In this framework, irreversible processes involve reshaping of the phenotype landscape, and the landscape reshaping causes the irreversibility of processes. We suggest reverse control by network rewiring which changes network dynamics with constant perturbation, resulting in the restoration of the original phenotype landscape. The proposed framework provides a conceptual basis for the reverse control of irreversible biological processes through network rewiring. WIREs Syst Biol Med 2016, 8:366-377. doi: 10.1002/wsbm.1346 For further resources related to this article, please visit the WIREs website. PMID:27327189

  2. Building phenomenological models of complex biological processes

    Science.gov (United States)

    Daniels, Bryan; Nemenman, Ilya

    2009-11-01

    A central goal of any modeling effort is to make predictions regarding experimental conditions that have not yet been observed. Overly simple models will not be able to fit the original data well, but overly complex models are likely to overfit the data and thus produce bad predictions. Modern quantitative biology modeling efforts often err on the complexity side of this balance, using myriads of microscopic biochemical reaction processes with a priori unknown kinetic parameters to model relatively simple biological phenomena. In this work, we show how Bayesian model selection (which is mathematically similar to low temperature expansion in statistical physics) can be used to build coarse-grained, phenomenological models of complex dynamical biological processes, which have better predictive powers than microscopically correct, but poorely constrained mechanistic molecular models. We illustrate this on the example of a multiply-modifiable protein molecule, which is a simplified description of multiple biological systems, such as an immune receptors and an RNA polymerase complex. Our approach is similar in spirit to the phenomenological Landau expansion for the free energy in the theory of critical phenomena.

  3. Towards the understanding of network information processing in biology

    Science.gov (United States)

    Singh, Vijay

    Living organisms perform incredibly well in detecting a signal present in the environment. This information processing is achieved near optimally and quite reliably, even though the sources of signals are highly variable and complex. The work in the last few decades has given us a fair understanding of how individual signal processing units like neurons and cell receptors process signals, but the principles of collective information processing on biological networks are far from clear. Information processing in biological networks, like the brain, metabolic circuits, cellular-signaling circuits, etc., involves complex interactions among a large number of units (neurons, receptors). The combinatorially large number of states such a system can exist in makes it impossible to study these systems from the first principles, starting from the interactions between the basic units. The principles of collective information processing on such complex networks can be identified using coarse graining approaches. This could provide insights into the organization and function of complex biological networks. Here I study models of biological networks using continuum dynamics, renormalization, maximum likelihood estimation and information theory. Such coarse graining approaches identify features that are essential for certain processes performed by underlying biological networks. We find that long-range connections in the brain allow for global scale feature detection in a signal. These also suppress the noise and remove any gaps present in the signal. Hierarchical organization with long-range connections leads to large-scale connectivity at low synapse numbers. Time delays can be utilized to separate a mixture of signals with temporal scales. Our observations indicate that the rules in multivariate signal processing are quite different from traditional single unit signal processing.

  4. Stochastic transport processes in discrete biological systems

    CERN Document Server

    Frehland, Eckart

    1982-01-01

    These notes are in part based on a course for advanced students in the applications of stochastic processes held in 1978 at the University of Konstanz. These notes contain the results of re­ cent studies on the stochastic description of ion transport through biological membranes. In particular, they serve as an introduction to an unified theory of fluctuations in complex biological transport systems. We emphasize that the subject of this volume is not to introduce the mathematics of stochastic processes but to present a field of theoretical biophysics in which stochastic methods are important. In the last years the study of membrane noise has become an important method in biophysics. Valuable information on the ion transport mechanisms in membranes can be obtained from noise analysis. A number of different processes such as the opening and closing of ion channels have been shown to be sources of the measured current or voltage fluctuations. Bio­ logical 'transport systems can be complex. For example, the tr...

  5. Diffusion processes and related topics in biology

    CERN Document Server

    Ricciardi, Luigi M

    1977-01-01

    These notes are based on a one-quarter course given at the Department of Biophysics and Theoretical Biology of the University of Chicago in 1916. The course was directed to graduate students in the Division of Biological Sciences with interests in population biology and neurobiology. Only a slight acquaintance with probability and differential equations is required of the reader. Exercises are interwoven with the text to encourage the reader to play a more active role and thus facilitate his digestion of the material. One aim of these notes is to provide a heuristic approach, using as little mathematics as possible, to certain aspects of the theory of stochastic processes that are being increasingly employed in some of the population biol­ ogy and neurobiology literature. While the subject may be classical, the nov­ elty here lies in the approach and point of view, particularly in the applica­ tions such as the approach to the neuronal firing problem and its related dif­ fusion approximations. It is a ple...

  6. Fluorescent and Luminescent Probes for Monitoring Hydroxyl Radical under Biological Conditions.

    Science.gov (United States)

    Żamojć, Krzysztof; Zdrowowicz, Magdalena; Jacewicz, Dagmara; Wyrzykowski, Dariusz; Chmurzyński, Lech

    2016-01-01

    Detection and quantitative determination in biological media of the hydroxyl radical are of great importance due to the role this radical plays in many physiological and pathological processes. This review focuses on the progress that has been made in recent years in the development of fluorescent and luminescent probes employed to monitor hydroxyl radical concentrations under biological conditions. PMID:26042844

  7. Chemical and biological flocculation process to treat municipal sewage and analysis of biological function

    Institute of Scientific and Technical Information of China (English)

    XIA Si-qing; YANG Dian-hai; XU Bin; ZHAO Jian-fu

    2005-01-01

    The pilot-scale experimental apparatus and the procedure of the chemical and biological flocculation process to verify the feasibility in treating Shanghai municipal sewage were introduced in this paper. In addition, the biological function of the process was discussed. The results of optimal running showed that in the reaction tank, the concentration of mixed liquor suspended solid(MLSS) was2 g/L, hydraulic retention time(HRT) was 35 min, dosage of liquid polyaluminium chloride(PAC) was 60 mg/L, and the concentration of polyacrylamide(PAM) was 0.5 mg/L. The effluent average concentrations of CODcr, TP, SS and BOD5 were 50 mg/L, 0.62 mg/L, 18mg/L, and 17 mg/L, respectively. These were better than the designed demand. In addition, the existence of biological degradation in this system was proven by several methods. The removal efficiencies of the chemical and biological flocculation process were 20% higher than that of the chemical flocculation process above at the same coagulant dosage. The treatment process under different situations was evaluated on a pilot-scale experiment, and the results provided magnificent parameters and optimal condition for future operation of the plant.

  8. Biological phosphorus uptake under anoxic and aerobic conditions

    DEFF Research Database (Denmark)

    Kerrn-Jespersen, Jens Peter; Henze, Mogens

    1993-01-01

    Biological phosphorus removal was investigated under anoxic and aerobic conditions. Tests were made to establish whether phosphorus accumulating bacteria can take up phosphate under anoxic conditions and thus utilise nitrate as oxidant. Furthermore, it was tested how the amount of organic matter...

  9. ROLE OF BIOLOGICAL PROCESSES IN TECHNOLOGY OF GROUND WATER TREATMENT

    OpenAIRE

    Yu. P. Sedluho; M. I. Lemesh

    2015-01-01

    Technological peculiar features of biocenosis development in water treatment facilities and a role of biological processes in the technology of ground water treatment are considered in the paper. The paper provides main factors that influence on biological process development.

  10. A Friendly-Biological Reactor SIMulator (BioReSIM for studying biological processes in wastewater treatment processes

    Directory of Open Access Journals (Sweden)

    Raul Molina

    2014-12-01

    Full Text Available Biological processes for wastewater treatments are inherently dynamic systems because of the large variations in the influent wastewater flow rate, concentration composition and the adaptive behavior of the involved microorganisms. Moreover, the sludge retention time (SRT is a critical factor to understand the bioreactor performances when changes in the influent or in the operation conditions take place. Since SRT are usually in the range of 10-30 days, the performance of biological reactors needs a long time to be monitored in a regular laboratory demonstration, limiting the knowledge that can be obtained in the experimental lab practice. In order to overcome this lack, mathematical models and computer simulations are useful tools to describe biochemical processes and predict the overall performance of bioreactors under different working operation conditions and variations of the inlet wastewater composition. The mathematical solution of the model could be difficult as numerous biochemical processes can be considered. Additionally, biological reactors description (mass balance, etc. needs models represented by partial or/and ordinary differential equations associated to algebraic expressions, that require complex computational codes to obtain the numerical solutions. Different kind of software for mathematical modeling can be used, from large degree of freedom simulators capable of free models definition (as AQUASIM, to closed predefined model structure programs (as BIOWIN. The first ones usually require long learning curves, whereas the second ones could be excessively rigid for specific wastewater treatment systems. As alternative, we present Biological Reactor SIMulator (BioReSIM, a MATLAB code for the simulation of sequencing batch reactors (SBR and rotating biological contactors (RBC as biological systems of suspended and attached biomass for wastewater treatment, respectively. This BioReSIM allows the evaluation of simple and complex

  11. Stochastic Simulation of Process Calculi for Biology

    Directory of Open Access Journals (Sweden)

    Andrew Phillips

    2010-10-01

    Full Text Available Biological systems typically involve large numbers of components with complex, highly parallel interactions and intrinsic stochasticity. To model this complexity, numerous programming languages based on process calculi have been developed, many of which are expressive enough to generate unbounded numbers of molecular species and reactions. As a result of this expressiveness, such calculi cannot rely on standard reaction-based simulation methods, which require fixed numbers of species and reactions. Rather than implementing custom stochastic simulation algorithms for each process calculus, we propose to use a generic abstract machine that can be instantiated to a range of process calculi and a range of reaction-based simulation algorithms. The abstract machine functions as a just-in-time compiler, which dynamically updates the set of possible reactions and chooses the next reaction in an iterative cycle. In this short paper we give a brief summary of the generic abstract machine, and show how it can be instantiated with the stochastic simulation algorithm known as Gillespie's Direct Method. We also discuss the wider implications of such an abstract machine, and outline how it can be used to simulate multiple calculi simultaneously within a common framework.

  12. Process control under safety aspects

    International Nuclear Information System (INIS)

    The safety of people and the environment is increasingly important in the operation and, consequently, also in the project design of process equipment. Rules and regulations for safeguarding of industrial process plants (not-nuclear and nuclear) by means of process control engineering are either being developed or expanded. This includes the international harmonization of existing national codes. This article presents an introduction into the philosophy of ensuring plant safety by means of instrumentation and control protection systems. The methods of risk assessment are described, and various potential solutions are shown which are geared to achieving the necessary level of safety and, at the same time, allowing flexible operation to be maintained. Reference is made to the problems existing with respect to integrating people into this process, i.e. man-machine interaction, especially in view of possible interventions in emergencies

  13. Signal Processing under Active Monitoring

    OpenAIRE

    Mostovyi, Oleksii

    2005-01-01

    This paper describes a method of signal preprocessing under active monitoring. Suppose we want to solve the inverse problem of getting the response of a medium to one powerful signal, which is equivalent to obtaining the transmission function of the medium, but do not have an opportunity to conduct such an experiment (it might be too expensive or harmful for the environment). Practically the problem can be reduced to obtaining the transmission function of the medium. In this case ...

  14. Process efficiency simulation for key process parameters in biological methanogenesis

    Directory of Open Access Journals (Sweden)

    Sébastien Bernacchi

    2014-09-01

    Full Text Available New generation biofuels are a suitable approach to produce energy carriers in an almost CO2 neutral way. A promising reaction is the conversion of CO2 and H2 to CH4. This contribution aims at elucidating a bioprocess comprised of a core reaction unit using microorganisms from the Archaea life domain, which metabolize CO2 and H2 to CH4, followed by a gas purification step. The process is simulated and analyzed thermodynamically using the Aspen Plus process simulation environment. The goal of the study was to quantify effects of process parameters on overall process efficiency using a kinetic model derived from previously published experimental results. The used empirical model links the production rate of CH4 and biomass to limiting reactant concentrations. In addition, Aspen Plus was used to improve bioprocess quantification. Impacts of pressure as well as dilution of reactant gas with up to 70% non-reactive gas on overall process efficiency was evaluated. Pressure in the reactor unit of 11 bar at 65℃ with a pressure of 21 bar for gas purification led to an overall process efficiency comprised between 66% and 70% for gaseous product and between 73% and 76% if heat of compression is considered a valuable product. The combination of 2 bar pressure in the reactor and 21 bar for purification was the most efficient combination of parameters. This result shows Aspen Plus potential for similar bioprocess development as it accounts for the energetic aspect of the entire process. In fact, the optimum for the overall process efficiency was found to differ from the optimum of the reaction unit. High efficiency of over 70% demonstrates that biological methanogenesis is a promising alternative for a chemical methanation reaction.

  15. Optimization criteria and biological process enrichment in homologous multiprotein modules.

    Science.gov (United States)

    Hodgkinson, Luqman; Karp, Richard M

    2013-06-25

    Biological process enrichment is a widely used metric for evaluating the quality of multiprotein modules. In this study, we examine possible optimization criteria for detecting homologous multiprotein modules and quantify their effects on biological process enrichment. We find that modularity, linear density, and module size are the most important criteria considered, complementary to each other, and that graph theoretical attributes account for 36% of the variance in biological process enrichment. Variations in protein interaction similarity within module pairs have only minor effects on biological process enrichment. As random modules increase in size, both biological process enrichment and modularity tend to improve, although modularity does not show this upward trend in modules with size at most 50 proteins. To adjust for these trends, we recommend a size correction based on random sampling of modules when using biological process enrichment or other attributes to evaluate module boundaries. Characteristics of homologous multiprotein modules optimized for each of the optimization criteria are examined. PMID:23757502

  16. Uncovering the underlying physical mechanisms of biological systems via quantification of landscape and flux

    Science.gov (United States)

    Li, Xu; Xiakun, Chu; Zhiqiang, Yan; Xiliang, Zheng; Kun, Zhang; Feng, Zhang; Han, Yan; Wei, Wu; Jin, Wang

    2016-01-01

    In this review, we explore the physical mechanisms of biological processes such as protein folding and recognition, ligand binding, and systems biology, including cell cycle, stem cell, cancer, evolution, ecology, and neural networks. Our approach is based on the landscape and flux theory for nonequilibrium dynamical systems. This theory provides a unifying principle and foundation for investigating the underlying mechanisms and physical quantification of biological systems. Project supported by the Natural Science Foundation of China (Grant Nos. 21190040, 11174105, 91225114, 91430217, and 11305176) and Jilin Province Youth Foundation, China (Grant No. 20150520082JH).

  17. ROLE OF BIOLOGICAL PROCESSES IN TECHNOLOGY OF GROUND WATER TREATMENT

    Directory of Open Access Journals (Sweden)

    Yu. P. Sedluho

    2008-01-01

    Full Text Available Technological peculiar features of biocenosis development in water treatment facilities and a role of biological processes in the technology of ground water treatment are considered in the paper. The paper provides main factors that influence on biological process development.

  18. Vacuum-sealed casting process under pressure

    Institute of Scientific and Technical Information of China (English)

    LI Chen-xi; GUO Tai-ming; WU Chun-jing; WANG Hong

    2006-01-01

    A new casting method, the vacuum-sealed mold casting under pressure, has been developed, and thin wall iron castings with high precision and smooth surface have been produced successfully with this casting method. The experimental results show that the liquid iron has a very excellent filling ability because a high negative pressure is formed in the mold cavity during filling process. The vacuum-sealed mold under pressure has very high compressive strength greater than 650 kPa, which is 3-4 times as high as that of the molds produced by high-pressure molding process or vacuum-sealed molding process.

  19. Assumptions Underlying Agile Software Development Processes

    OpenAIRE

    Turk, Dan; France, Robert; Rumpe, Bernhard

    2014-01-01

    Agile processes focus on facilitating early and fast production of working code, and are based on software development process models that support iterative, incremental development of software. Although agile methods have existed for a number of years now, answers to questions concerning the suitability of agile processes to particular software development environments are still often based on anecdotal accounts of experiences. An appreciation of the (often unstated) assumptions underlying a...

  20. Recent Developments in Biological Hydrogen Production Processes

    Directory of Open Access Journals (Sweden)

    DEBABRATA DAS

    2008-07-01

    Full Text Available Biohydrogen production technology can utilize renewable energy sources like biomass for the generation of hydrogen, the cleanest form of energy for the use of mankind. However, major constraints to the commercialization of these processes include lower hydrogen yields and rates of hydrogen production. To overcome these bottlenecks intensive research work has already been carried out on the advancement of these processes such as the development of genetically modified microorganisms, the improvement of the bioreactor design, molecular engineering of the key enzyme hydrogenases, the development of two stage processes, etc. The present paper explores the recent advancements that have been made till date and also presents the state of the art in molecular strategies to improve the hydrogen production.

  1. Motivational processes underlying both prejudice and helping.

    Science.gov (United States)

    Graziano, William G; Habashi, Meara M

    2010-08-01

    Examined at the behavioral level, prejudice and helping appear as qualitatively different and perhaps mutually incompatible social behaviors. As a result, the literatures on prejudice and helping evolved largely independent of each other. When they are examined at the process level, however, underlying similarities appear. Furthermore, when anomalies are examined within each of these two separate literatures, similarities become more apparent. Finally, the personality dimension of agreeableness is systematically related to both prejudice and helping. The authors propose that many forms of prejudice and helping are expressions of underlying processes of self-regulation and social accommodation. After discussing several other social-cognitive approaches to self-correction, the authors offer a novel opponent process model of motivation that integrates the apparently exclusive processes of prejudice and helping into a single system. PMID:20435802

  2. Supporting chemical process design under uncertainty

    Directory of Open Access Journals (Sweden)

    A. Wechsung

    2010-09-01

    Full Text Available A major challenge in chemical process design is to make design decisions based on partly incomplete or imperfect design input data. Still, process engineers are expected to design safe, dependable and cost-efficient processes under these conditions. The complexity of typical process models limits intuitive engineering estimates to judge the impact of uncertain parameters on the proposed design. In this work, an approach to quantify the effect of uncertainty on a process design in order to enhance comparisons among different designs is presented. To facilitate automation, a novel relaxation-based heuristic to differentiate between numerical and physical infeasibility when simulations do not converge is introduced. It is shown how this methodology yields more details about limitations of a studied process design.

  3. [Biological Process Oriented Online Fourier Transform Infrared Spectrometer].

    Science.gov (United States)

    Xie, Fei; Wu, Qiong-shui; Zeng, Li-bo

    2015-08-01

    An online Fourier Transform Infrared Spectrometer and an ATR (Attenuated Total Reflection) probe, specifically at the application of real time measurement of the reaction substrate concentration in biological processes, were designed. (1) The spectrometer combined the theories of double cube-corner reflectors and flat mirror, which created a kind of high performance interferometer system. The light path folding way was utilized to makes the interferometer compact structure. Adopting double cube-corner reflectors, greatly reduces the influence of factors in the process of moving mirror movement such as rotation, tilt, etc. The parallelogram oscillation flexible support device was utilized to support the moving mirror moves. It cancelled the friction and vibration during mirror moving, and ensures the smooth operation. The ZnSe splitter significantly improved the hardware reliability in high moisture environment. The method of 60° entrance to light splitter improves the luminous flux. (2) An ATR in situ measuring probe with simple structure, large-flux, economical and practical character was designed in this article. The transmission of incident light and the light output utilized the infrared pipe with large diameter and innerplanted-high plating membrane, which conducted for the infrared transmission media of ATR probe. It greatly reduced the energy loss of infrared light after multiple reflection on the inner wall of the light pipe. Therefore, the ATR probe obtained high flux, improved the signal strength, which make the signal detected easily. Finally, the high sensitivity of MCT (Mercury Cadmium Telluride) detector was utilized to realize infrared interference signal collection, and improved the data quality of detection. The test results showed that the system yields the advantages of perfect moisture-proof performance, luminous flux, online measurement, etc. The designed online Fourier infrared spectrometer can real-time measured common reactant substrates

  4. Biological sulfuric acid transformation: Reactor design and process optimization.

    Science.gov (United States)

    Stucki, G; Hanselmann, K W; Hürzeler, R A

    1993-02-01

    As an alternative to the current disposal technologies for waste sulfuric acid, a new combination of recycling processes was developed. The strong acid (H(2)SO(4)) is biologically converted with the weak acid (CH(3)COOH) into two volatile weak acids (H(2)S, H(2)CO(3)) by sulfate-reducing bacteria. The transformation is possible without prior neutralization of the sulfuric acid. The microbially mediated transformation can be followed by physiochemical processes for the further conversion of the H(2)S.The reduction of sulfate to H(2)S is carried out under carbon-limited conditions at pH 7.5 to 8.5. A fixed-bed biofilm column reactor is used in conjunction with a separate gas-stripping column which was installed in the recycle stream. Sulfate, total sulfide, and the carbon substrate (in most cases acetate) were determined quantitatively. H(2)S and CO(2) are continually removed by stripping with N(2). Optimal removal is achieved under pH conditions which are adjusted to values below the pK(a)-values of the acids. The H(2)S concentration in the stripped gas was 2% to 8% (v/v) if H(2)SO(4) and CH(3)COOH are fed to the recycle stream just before the stripping column.Microbiol conversion rates of 65 g of sulfate reduced per liter of bioreactor volume per day are achieved and bacterial conversion efficiencies for sulfate of more than 95% can be maintained if the concentration of undissociated H(2)S is kept below 40 to 50 mg/L. Porous glass spheres, lava beads, and polyurethane pellets are useful matrices for the attachment of the bacterial biomass. Theoretical aspects and the dependence of the overall conversion performance on selected process parameters are illustrated in the Appendix to this article. PMID:18609554

  5. Optimization of electrocoagulation process to treat biologically pretreated bagasse effluent

    Directory of Open Access Journals (Sweden)

    Thirugnanasambandham K.

    2014-01-01

    Full Text Available The main objective of the present study was to investigate the efficiency of electrocoagulation process as a post-treatment to treat biologically pretreated bagasse effluent using iron electrodes. The removal of chemical oxygen demand (COD and total suspended solids (TSS were studied under different operating conditions such as amount of dilution, initial pH, applied current and electrolyte dose by using response surface methodology (RSM coupled with four-factor three-level Box-Behnken experimental design (BBD. The experimental results were analyzed by Pareto analysis of variance (ANOVA and second order polynomial mathematical models were developed with high correlation of efficiency (R2 for COD, TSS removal and electrical energy consumption (EEC. The individual and combined effect of variables on responses was studied using three dimensional response surface plots. Under the optimum operating conditions, such as amount of dilution at 30 %, initial pH of 6.5, applied current of 8 mA cm-2 and electrolyte dose of 740 mg l-1 shows the higher removal efficiency of COD (98 % and TSS (93 % with EEC of 2.40 Wh, which were confirmed by validation experiments.

  6. Synthetic Biology: Tools to Design, Build, and Optimize Cellular Processes

    Directory of Open Access Journals (Sweden)

    Eric Young

    2010-01-01

    Full Text Available The general central dogma frames the emergent properties of life, which make biology both necessary and difficult to engineer. In a process engineering paradigm, each biological process stream and process unit is heavily influenced by regulatory interactions and interactions with the surrounding environment. Synthetic biology is developing the tools and methods that will increase control over these interactions, eventually resulting in an integrative synthetic biology that will allow ground-up cellular optimization. In this review, we attempt to contextualize the areas of synthetic biology into three tiers: (1 the process units and associated streams of the central dogma, (2 the intrinsic regulatory mechanisms, and (3 the extrinsic physical and chemical environment. Efforts at each of these three tiers attempt to control cellular systems and take advantage of emerging tools and approaches. Ultimately, it will be possible to integrate these approaches and realize the vision of integrative synthetic biology when cells are completely rewired for biotechnological goals. This review will highlight progress towards this goal as well as areas requiring further research.

  7. An introduction to stochastic processes with applications to biology

    CERN Document Server

    Allen, Linda J S

    2010-01-01

    An Introduction to Stochastic Processes with Applications to Biology, Second Edition presents the basic theory of stochastic processes necessary in understanding and applying stochastic methods to biological problems in areas such as population growth and extinction, drug kinetics, two-species competition and predation, the spread of epidemics, and the genetics of inbreeding. Because of their rich structure, the text focuses on discrete and continuous time Markov chains and continuous time and state Markov processes.New to the Second EditionA new chapter on stochastic differential equations th

  8. Electron beam/biological processing of anaerobic and aerobic sludge

    International Nuclear Information System (INIS)

    Besides common chemical and biological methods, the radiation technology is a promising way of sludge treatment. The paper describes possibilities of combined accelerated electrons/biological processing of both anaerobic and aerobic sludge. Besides one-shot experiments, experimental reactors for the simulation of anaerobic processes have been used. Main effort has been aimed to decrease organic compounds concentration and overall volume of solids, to improve some physico-chemical parameters of sludge, to validate hygienisation effects of the ionising radiation, and in the case of anaerobic sludge, to increase the volume of the produced biogas. Positive effects of the electron beam processing have been observed on all previously named parameters. (author)

  9. Investigations of biological processes in Austrian MBT plants

    International Nuclear Information System (INIS)

    Mechanical biological treatment (MBT) of municipal solid waste (MSW) has become an important technology in waste management during the last decade. The paper compiles investigations of mechanical biological processes in Austrian MBT plants. Samples from all plants representing different stages of degradation were included in this study. The range of the relevant parameters characterizing the materials and their behavior, e.g. total organic carbon, total nitrogen, respiration activity and gas generation sum, was determined. The evolution of total carbon and nitrogen containing compounds was compared and related to process operation. The respiration activity decreases in most of the plants by about 90% of the initial values whereas the ammonium release is still ongoing at the end of the biological treatment. If the biogenic waste fraction is not separated, it favors humification in MBT materials that is not observed to such extent in MSW. The amount of organic carbon is about 15% dry matter at the end of the biological treatment.

  10. Investigations of biological processes in Austrian MBT plants.

    Science.gov (United States)

    Tintner, J; Smidt, E; Böhm, K; Binner, E

    2010-10-01

    Mechanical biological treatment (MBT) of municipal solid waste (MSW) has become an important technology in waste management during the last decade. The paper compiles investigations of mechanical biological processes in Austrian MBT plants. Samples from all plants representing different stages of degradation were included in this study. The range of the relevant parameters characterizing the materials and their behavior, e.g. total organic carbon, total nitrogen, respiration activity and gas generation sum, was determined. The evolution of total carbon and nitrogen containing compounds was compared and related to process operation. The respiration activity decreases in most of the plants by about 90% of the initial values whereas the ammonium release is still ongoing at the end of the biological treatment. If the biogenic waste fraction is not separated, it favors humification in MBT materials that is not observed to such extent in MSW. The amount of organic carbon is about 15% dry matter at the end of the biological treatment. PMID:20580543

  11. Biological and Biomedical Coatings Handbook Processing and Characterization

    CERN Document Server

    Zhang, Sam

    2011-01-01

    Written in a versatile, contemporary style that will benefit both novice and expert alike, Biological and Biomedical Coatings Handbook, Two-Volume Set covers the state of the art in the development and implementation of advanced thin films and coatings in the biological field. Consisting of two volumes--Processing and Characterization and Applications--this handbook details the latest understanding of advances in the design and performance of biological and biomedical coatings, covering a vast array of material types, including bio-ceramics, polymers, glass, chitosan, and nanomaterials. Contri

  12. Hidden Markov processes theory and applications to biology

    CERN Document Server

    Vidyasagar, M

    2014-01-01

    This book explores important aspects of Markov and hidden Markov processes and the applications of these ideas to various problems in computational biology. The book starts from first principles, so that no previous knowledge of probability is necessary. However, the work is rigorous and mathematical, making it useful to engineers and mathematicians, even those not interested in biological applications. A range of exercises is provided, including drills to familiarize the reader with concepts and more advanced problems that require deep thinking about the theory. Biological applications are t

  13. [Review on scientific connotation of leech processed under high temperature].

    Science.gov (United States)

    Ma, Li; Ma, Lin; Wang, Shu-bin; Wang, Xuan; Yue, Lin

    2015-10-01

    Animal medicines mainly contain protein which was organic molecule with quaternary structure and had the property of thermal denaturation. When suffering from heat for a consistent time, the native conformation of protein would be destroyed. After denaturation the biological activity of protein will lose and some physicochemical and biochemical properties will be changed. Leech was a classical animal medicine in the views of traditional Chinese medicine (TCM) which had the functions of breaking stagnant and eliminating blood stasis. In the usage history, it was processed for a long time. No matter stir-frying leech with talc powder embodied in Chinese Pharmacopoeia or stir-baking with wine as a distinctive method in Beijing district, the process procedure was basically performed under high temperature. The purposes and intentions of process are mostly limited to technology conditions at specific historical period. In this article, based on existing processing procedure and its character of Leech, the changes of active components and pharmacological activities before and after processing under high temperature were summarized. The results demonstrate that the protein of leech would be denaturated; some active peptide such as hirudin were partly or totally destroyed; some toxic mineral elements, such as Pb, Hg, Cd, were decreased; at the same time, heating can promote some chemical components transforming into hypoxanthine which had the function of antihypertensive, antiasthmatic and antalgic. Consequently, after processed under high temperature, the purpose of decreasing toxicity and alleviating the strong property was achieved. Pharmacological changes of leech processed under high temperature were mainly manifested in the anticoagulant and antithrombotic activity, etc. Based on current processing research status about animal medicine leech, future research methods and directions on scientific connotation of leech processed under high temperature were put forward in

  14. Present and perspective of enhanced biological phosphorus removal process; Seibutsugakuteki rin jokyoho no genjo to kadai

    Energy Technology Data Exchange (ETDEWEB)

    Nakamura, K. [National Inst. of Bioscience and Human-Technology, Tsukuba (Japan)

    1997-02-05

    Biological phosphorus removal process utilizing anaerobic and aerobic conditions, mechanism of phosphorus removal, and microbes relating to phosphorus removal are outlined, and future problems are discussed. By mixing waste water and sludge under anaerobic condition followed by treatment under aerobic condition, phosphorus content in sludge increases to enable biological phosphorus removal. More microbes with high polyphosphorus accumulating performance are acquired by the anaerobic/aerobic process than other microbes with the result of their preferential increase, and the process has high phosphorus removal characteristic than the general treatment process. Microbes relating to phosphorus removal, immobilization of polyphosphate accumulating microbes, and phosphorus acquiring and releasing characteristics of immobilized mycelium are discussed. Application of gel entrapped immobilized mycelium to phosphorus removal and problems in biological phosphorus removing methods are described. 18 refs., 12 figs.

  15. Fuel corrosion processes under waste disposal conditions

    International Nuclear Information System (INIS)

    The release of the majority of radionuclides from spent nuclear fuel under permanent disposal conditions will be controlled by the rate of dissolution of the UO2 fuel matrix. In this manuscript the mechanism of the coupled anodic (fuel dissolution) and cathodic (oxidant reduction) reactions which constitute the overall fuel corrosion process is reviewed, and the many published observations on fuel corrosion under disposal conditions discussed. The primary emphasis is on summarizing the overall mechanistic behaviour and establishing the primary factors likely to control fuel corrosion. Included are discussions on the influence of various oxidants including radiolytic ones, pH, temperature, groundwater composition, and the formation of corrosion product deposits. The relevance of the data recorded on unirradiated UO2 to the interpretation of spent fuel behaviour is included. Based on the review, the data used to develop fuel corrosion models under the conditions anticipated in Yucca Mountain (NV, USA) are evaluated

  16. Process efficiency simulation for key process parameters in biological methanogenesis

    OpenAIRE

    Sébastien Bernacchi; Michaela Weissgram; Walter Wukovits; Christoph Herwig

    2014-01-01

    New generation biofuels are a suitable approach to produce energy carriers in an almost CO2 neutral way. A promising reaction is the conversion of CO2 and H2 to CH4. This contribution aims at elucidating a bioprocess comprised of a core reaction unit using microorganisms from the Archaea life domain, which metabolize CO2 and H2 to CH4, followed by a gas purification step. The process is simulated and analyzed thermodynamically using the Aspen Plus process simulation environment. The goal of t...

  17. Pyrroloquinoline-quinone and its versatile roles in biological processes

    Indian Academy of Sciences (India)

    H S Misra; Y S Rajpurohit; N P Khairnar

    2012-06-01

    Pyrroloquinoline-quinine (PQQ) was initially characterized as a redox cofactor for membrane-bound dehydrogenases in the bacterial system. Subsequently, PQQ was shown to be an antioxidant protecting the living cells from oxidative damage in vivo and the biomolecules from artificially produced reaction oxygen species in vitro. The presence of PQQ has been documented from different biological samples. It functions as a nutrient and vitamin for supporting the growth and protection of living cells under stress. Recently, the role of PQQ has also been shown as a bio-control agent for plant fungal pathogens, an inducer for proteins kinases involved in cellular differentiation of mammalian cells and as a redox sensor leading to development of biosensor. Recent reviews published on PQQ and enzymes requiring this cofactor have brought forth the case specific roles of PQQ. This review covers the comprehensive information on various aspects of PQQ known till date. These include the roles of PQQ in the regulation of cellular growth and differentiation in mammalian system, as a nutrient and vitamin in stress tolerance, in crop productivity through increasing the availability of insoluble phosphate and as a bio-control agent, and as a redox agent leading to the biosensor development. Most recent findings correlating the exceptionally high redox recycling ability of PQQ to its potential as anti-neurodegenerative, anticancer and pharmacological agents, and as a signalling molecule have been distinctly brought out. This review discusses different findings suggesting the versatility in PQQ functions and provides the most plausible intellectual basis to the ubiquitous roles of this compound in a large number of biological processes, as a nutrient and a perspective vitamin.

  18. Pyrroloquinoline-quinone and its versatile roles in biological processes.

    Science.gov (United States)

    Misra, H S; Rajpurohit, Y S; Khairnar, N P

    2012-06-01

    Pyrroloquinoline-quinine (PQQ) was initially characterized as a redox cofactor for membrane-bound dehydrogenases in the bacterial system. Subsequently, PQQ was shown to be an antioxidant protecting the living cells from oxidative damage in vivo and the biomolecules from artificially produced reaction oxygen species in vitro. The presence of PQQ has been documented from different biological samples. It functions as a nutrient and vitamin for supporting the growth and protection of living cells under stress. Recently, the role of PQQ has also been shown as a bio-control agent for plant fungal pathogens, an inducer for proteins kinases involved in cellular differentiation of mammalian cells and as a redox sensor leading to development of biosensor. Recent reviews published on PQQ and enzymes requiring this cofactor have brought forth the case specific roles of PQQ. This review covers the comprehensive information on various aspects of PQQ known till date. These include the roles of PQQ in the regulation of cellular growth and differentiation in mammalian system, as a nutrient and vitamin in stress tolerance, in crop productivity through increasing the availability of insoluble phosphate and as a bio-control agent, and as a redox agent leading to the biosensor development. Most recent findings correlating the exceptionally high redox recycling ability of PQQ to its potential as anti-neurodegenerative, anticancer and pharmacological agents, and as a signalling molecule have been distinctly brought out. This review discusses different findings suggesting the versatility in PQQ functions and provides the most plausible intellectual basis to the ubiquitous roles of this compound in a large number of biological processes, as a nutrient and a perspective vitamin. PMID:22581337

  19. Is metabolic rate a universal 'pacemaker' for biological processes?

    Science.gov (United States)

    Glazier, Douglas S

    2015-05-01

    A common, long-held belief is that metabolic rate drives the rates of various biological, ecological and evolutionary processes. Although this metabolic pacemaker view (as assumed by the recent, influential 'metabolic theory of ecology') may be true in at least some situations (e.g. those involving moderate temperature effects or physiological processes closely linked to metabolism, such as heartbeat and breathing rate), it suffers from several major limitations, including: (i) it is supported chiefly by indirect, correlational evidence (e.g. similarities between the body-size and temperature scaling of metabolic rate and that of other biological processes, which are not always observed) - direct, mechanistic or experimental support is scarce and much needed; (ii) it is contradicted by abundant evidence showing that various intrinsic and extrinsic factors (e.g. hormonal action and temperature changes) can dissociate the rates of metabolism, growth, development and other biological processes; (iii) there are many examples where metabolic rate appears to respond to, rather than drive the rates of various other biological processes (e.g. ontogenetic growth, food intake and locomotor activity); (iv) there are additional examples where metabolic rate appears to be unrelated to the rate of a biological process (e.g. ageing, circadian rhythms, and molecular evolution); and (v) the theoretical foundation for the metabolic pacemaker view focuses only on the energetic control of biological processes, while ignoring the importance of informational control, as mediated by various genetic, cellular, and neuroendocrine regulatory systems. I argue that a comprehensive understanding of the pace of life must include how biological activities depend on both energy and information and their environmentally sensitive interaction. This conclusion is supported by extensive evidence showing that hormones and other regulatory factors and signalling systems coordinate the processes of

  20. Qualitative analysis of biological oscillators as processing structures

    OpenAIRE

    Bordon, Jure

    2011-01-01

    Recently there is a certain tendency in the field of computer science to find alternative processing platforms, which would replace the conventional ones that are starting to reach their limits in the meaning of components' size and speed. Computer science is trying to avoid its dependency on traditional electronic components. One of such alternatives is also processing in biological systems. Whatever the future processing platform might be, computer science will most likely always need a com...

  1. State of the art of biological hydrogen production processes

    International Nuclear Information System (INIS)

    Our report gives an overview of hydrogen production processes with bacteria or algae. 4 main processes are described: water biophotolysis, photo- fermentation biological CO conversion and dark fermentation. Chemical phenomena which lead to hydrogen generation are exp/aired. Performances, limits and outlook are given for each process. Main projects, programs and key players involved in this field of research have been listed. This paper resumes few results of this report. (authors)

  2. Process engineering in biological aerobic waste-water treatment

    Energy Technology Data Exchange (ETDEWEB)

    Gavrilescu, M.; Macoveanu, M. [Technical Univ. Gh. Asachi, Iasi (Romania). Dept. of Environmental Engineering

    1999-11-01

    A non-comprehensive review of several technical developments in the field of aerobic biological waste-water treatment engineering is carried out, considering the active role the engineers have to play in this field. This paper brings together conventional and advanced problems in the field of aerobic biological waste-water treatment. Such an overview of biological waste-water treatment also precedes comments on some important aspects concerning the microorganisms responsible for waste-water treatment as well as consideration of the application of fundamentals and kinetics to the analysis of the biological processes used most commonly for aerobic biological waste-water treatment. A survey of the development of the biological activated-sludge process and some modifications are given. Some problems implied in the conventional activated-sludge waste-water treatment are analyzed, considering conventional processes and bioreactor models (the continuous stirred-tank reactor model and the plug-flow reactor models of the activated-sludge process) as well as aerated lagoons. Further, modifications of the activated-sludge process are presented. These include additional details on the bioreactor progress and applications, with emphasis on aspects concerning airlift bioreactors and their variants, deep-shaft bioreactors and reciprocating jet bioreactors which are considered as the third generation of bioreactors owing to their important advantages in design, operation and performance in waste-water treatment. Sequencing-batch reactors and aerobic digestion processes, including conventional aerobic digestion, high-purity oxygen digestion, thermophilic aerobic digestion and cryophylic aerobic digestion are also reviewed. Finally, some aspects regarding the operational factors that are involved in the selection of the reactor type are included. (orig.)

  3. Boolean Models of Biological Processes Explain Cascade-Like Behavior.

    Science.gov (United States)

    Chen, Hao; Wang, Guanyu; Simha, Rahul; Du, Chenghang; Zeng, Chen

    2016-01-01

    Biological networks play a key role in determining biological function and therefore, an understanding of their structure and dynamics is of central interest in systems biology. In Boolean models of such networks, the status of each molecule is either "on" or "off" and along with the molecules interact with each other, their individual status changes from "on" to "off" or vice-versa and the system of molecules in the network collectively go through a sequence of changes in state. This sequence of changes is termed a biological process. In this paper, we examine the common perception that events in biomolecular networks occur sequentially, in a cascade-like manner, and ask whether this is likely to be an inherent property. In further investigations of the budding and fission yeast cell-cycle, we identify two generic dynamical rules. A Boolean system that complies with these rules will automatically have a certain robustness. By considering the biological requirements in robustness and designability, we show that those Boolean dynamical systems, compared to an arbitrary dynamical system, statistically present the characteristics of cascadeness and sequentiality, as observed in the budding and fission yeast cell- cycle. These results suggest that cascade-like behavior might be an intrinsic property of biological processes. PMID:26821940

  4. Discovering Networks of Perturbed Biological Processes in Hepatocyte Cultures

    Science.gov (United States)

    Lasher, Christopher D.; Rajagopalan, Padmavathy; Murali, T. M.

    2011-01-01

    The liver plays a vital role in glucose homeostasis, the synthesis of bile acids and the detoxification of foreign substances. Liver culture systems are widely used to test adverse effects of drugs and environmental toxicants. The two most prevalent liver culture systems are hepatocyte monolayers (HMs) and collagen sandwiches (CS). Despite their wide use, comprehensive transcriptional programs and interaction networks in these culture systems have not been systematically investigated. We integrated an existing temporal transcriptional dataset for HM and CS cultures of rat hepatocytes with a functional interaction network of rat genes. We aimed to exploit the functional interactions to identify statistically significant linkages between perturbed biological processes. To this end, we developed a novel approach to compute Contextual Biological Process Linkage Networks (CBPLNs). CBPLNs revealed numerous meaningful connections between different biological processes and gene sets, which we were successful in interpreting within the context of liver metabolism. Multiple phenomena captured by CBPLNs at the process level such as regulation, downstream effects, and feedback loops have well described counterparts at the gene and protein level. CBPLNs reveal high-level linkages between pathways and processes, making the identification of important biological trends more tractable than through interactions between individual genes and molecules alone. Our approach may provide a new route to explore, analyze, and understand cellular responses to internal and external cues within the context of the intricate networks of molecular interactions that control cellular behavior. PMID:21245926

  5. Research on rural sewage treatment using biological-ecological coupling process

    OpenAIRE

    Shi, Chang; Zhang, Jing; Liu, Chun; Zaixing LI; Gen WU; Yang, Jingliang

    2016-01-01

    Developing low-investment, low-energy consumption and low-maintenance sewage treatment process is important for sewage treatment in rural areas. An upflow anaerobic filter (UAF) without energy consumption and a subsurface flow wetland (SFW) are utilized as a biological-ecological coupling process to treat rural domestic sewage. The effect of the coupling process on treatment performance of domestic sewage under different hydraulic retention time (HRT) is investigated. The removal of nitrogen ...

  6. Cancer systems biology: signal processing for cancer research

    Institute of Scientific and Technical Information of China (English)

    Olli Yli-Harja; Antti Ylip(a)(a); Matti Nykter; Wei Zhang

    2011-01-01

    In this editorial we introduce the research paradigms of signal processing in the era of systems biology. Signal processing is a field of science traditionally focused on modeling electronic and communications systems, but recently it has turned to biological applications with astounding results. The essence of signal processing is to describe the natural world by mathematical models and then, based on these models, develop efficient computational tools for solving engineering problems. Here, we underline, with examples, the endless possibilities which arise when the battle-hardened tools of engineering are applied to solve the problems that have tormented cancer researchers. Based on this approach, a new field has emerged, called cancer systems biology. Despite its short history, cancer systems biology has already produced several success stories tackling previously impracticable problems. Perhaps most importantly, it has been accepted as an integral part of the major endeavors of cancer research, such as analyzing the genomic and epigenomic data produced by The Cancer Genome Atlas (TCGA) project. Finally, we show that signal processing and cancer research, two fields that are seemingly distant from each other, have merged into a field that is indeed more than the sum of its parts.

  7. Transport processes in biological systems: Tumoral cells and human brain

    Science.gov (United States)

    Lucia, Umberto

    2014-01-01

    The entropy generation approach has been developed for the analysis of complex systems, with particular regards to biological systems, in order to evaluate their stationary states. The entropy generation is related to the transport processes related to exergy flows. Moreover, cancer can be described as an open complex dynamic and self-organizing system. Consequently, it is used as an example useful to evaluate the different thermo-chemical quantities of the transport processes in normal and in tumoral cells systems.

  8. iBiology: communicating the process of science.

    Science.gov (United States)

    Goodwin, Sarah S

    2014-08-01

    The Internet hosts an abundance of science video resources aimed at communicating scientific knowledge, including webinars, massive open online courses, and TED talks. Although these videos are efficient at disseminating information for diverse types of users, they often do not demonstrate the process of doing science, the excitement of scientific discovery, or how new scientific knowledge is developed. iBiology (www.ibiology.org), a project that creates open-access science videos about biology research and science-related topics, seeks to fill this need by producing videos by science leaders that make their ideas, stories, and experiences available to anyone with an Internet connection. PMID:25080124

  9. Proceedings Fourth Workshop on Membrane Computing and Biologically Inspired Process Calculi 2010

    CERN Document Server

    Ciobanu, Gabriel; 10.4204/EPTCS.40

    2010-01-01

    The 4th Workshop on Membrane Computing and Biologically Inspired Process Calculi (MeCBIC 2010) is organized in Jena as a satellite event of the Eleventh International Conference on Membrane Computing (CMC11). Biological membranes play a fundamental role in the complex reactions which take place in cells of living organisms. The importance of this role has been considered in two different types of formalisms introduced recently. Membrane systems were introduced as a class of distributed parallel computing devices inspired by the observation that any biological system is a complex hierarchical structure, with a flow of biochemical substances and information that underlies their functioning. The modeling and analysis of biological systems has also attracted considerable interest of the process algebra research community. Thus the notions of membranes and compartments have been explicitly represented in a family of calculi, such as ambients and brane calculi. A cross fertilization of these two research areas has ...

  10. Biological removal of methanol from process condensate for the purpose of reclamation

    Institute of Scientific and Technical Information of China (English)

    WANG Yan-ming; YANG Min; ZHANG Yu; GAO Meng-chun; ZHANG Jing

    2004-01-01

    The biological removal of methanol from condensate of ammonia manufacturing processes for the purpose of reclamation using contact type reactor was studied. Methanol of 60 mg/L was removed completely under an HRT of 1.12 h. Optimal inorganic nutrient dose was determined on evaluating methanol removal performance and dehydrogenase activities (DHA) under different nutrition doses. The optimal inorganic nutrient dose only gave an increase of conductivity of ca. 10 μs/cm2 in the effluent on treating synthetic condensate containing methanol of 30 mg/L. The results demonstrated that biological removal of methanol was effective for the purpose of recovering the methanol-bearing condensate.

  11. Simultaneous nitrification and denitrification in step feeding biological nitrogen removal process

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The simultaneous nitrification and denitrification in step-feeding biological nitrogen removal process were investigated under different influent substrate concentrations and aeration flow rates.Biological occurrence of simultaneous nitrification and denitrifieation was verified in the aspect of nitrogen mass balance and alkalinity.The experimental results also showed that there was a distinct linear relationship between simultaneous nitrification and denitrification and DO concentration under the conditions of low and high aeration flow rate.In each experimental run the floe sizes of activated sludge were also measured and the results showed that simultaneous nitrification and denitrification could occur with very small size of floc.

  12. Classical and spatial stochastic processes with applications to biology

    CERN Document Server

    Schinazi, Rinaldo B

    2014-01-01

    The revised and expanded edition of this textbook presents the concepts and applications of random processes with the same illuminating simplicity as its first edition, but with the notable addition of substantial modern material on biological modeling. While still treating many important problems in fields such as engineering and mathematical physics, the book also focuses on the highly relevant topics of cancerous mutations, influenza evolution, drug resistance, and immune response. The models used elegantly apply various classical stochastic models presented earlier in the text, and exercises are included throughout to reinforce essential concepts. The second edition of Classical and Spatial Stochastic Processes is suitable as a textbook for courses in stochastic processes at the advanced-undergraduate and graduate levels, or as a self-study resource for researchers and practitioners in mathematics, engineering, physics, and mathematical biology. Reviews of the first edition: An appetizing textbook for a f...

  13. Assessment of biological Hydrogen production processes: A review

    Science.gov (United States)

    Najafpour, G. D.; Shahavi, M. H.; Neshat, S. A.

    2016-06-01

    Energy crisis created a special attention on renewable energy sources. Among these sources; hydrogen through biological processes is well-known as the most suitable and renewable energy sources. In terms of process yield, hydrogen production from various sources was evaluated. A summary of microorganisms as potential hydrogen producers discussed along with advantages and disadvantages of several bioprocesses. The pathway of photo-synthetic and dark fermentative organisms was discussed. In fact, the active enzymes involved in performance of biological processes for hydrogen generation were identified and their special functionalities were discussed. The influential factors affecting on hydrogen production were known as enzymes assisting liberation specific enzymes such as nitrogenase, hydrogenase and uptake hydrogenase. These enzymes were quite effective in reduction of proton and form active molecular hydrogen. Several types of photosynthetic systems were evaluated with intension of maximum hydrogen productivities. In addition dark fermentative and light intensities on hydrogen productions were evaluated. The hydrogen productivities of efficient hydrogen producing strains were evaluated.

  14. Benchmarking Combined Biological Phosphorus and Nitrogen Removal Wastewater Treatment Processes

    DEFF Research Database (Denmark)

    Gernaey, Krist; Jørgensen, Sten Bay

    2004-01-01

    This paper describes the implementation of a simulation benchmark for studying the influence of control strategy implementations on combined nitrogen and phosphorus removal processes in a biological wastewater treatment plant. The presented simulation benchmark plant and its performance criteria...... conditions respectively, the definition of performance indexes that include the phosphorus removal processes, and the selection of a suitable operating point for the plant. Two control loops were implemented: one for dissolved oxygen control using the oxygen transfer coefficient K(L)a as manipulated variable...... are to a large extent based on the already existing nitrogen removal simulation benchmark. The paper illustrates and motivates the selection of the treatment plant lay-out, the selection of the biological process model, the development of realistic influent disturbance scenarios for dry, rain and storm weather...

  15. Atypical Integration Process under the Global Crisis

    Directory of Open Access Journals (Sweden)

    Victor Romeo Ionescu

    2012-05-01

    Full Text Available The paper is focused on the idea of a new approach on the integration process under the presentglobal crisis. This is why the analyse tries to present „new” integration organisations which are made in orderto face the new socio-economic challenges. The whole theoretical approach is based on the latest importantspecific researches in the world. A distinct part of the paper deals with a case study connected to BRIC. Themain conclusion of the paper is not optimistic. The world economy is not able to face the crisis and thesolutions have to be found at individual level. Moreover the world economy is close to a more destructivewar: the economic war for survive.

  16. Fuel corrosion processes under waste disposal conditions

    International Nuclear Information System (INIS)

    Under the oxidizing conditions likely to be encountered in the Yucca Mountain Repository, fuel dissolution is a corrosion process involving the coupling of the anodic dissolution of the fuel with the cathodic reduction of oxidants available within the repository. The oxidants potentially available to drive fuel corrosion are environmental oxygen, supplied by the transport through the permeable rock of the mountain and molecular and radical species produced by the radiolysis of available aerated water. The mechanism of these coupled anodic and cathodic reactions is reviewed in detail. While gaps in understanding remain, many kinetic features of these reactions have been studied in considerable detail, and a reasonably justified mechanism for fuel corrosion is available. The corrosion rate is determined primarily by environmental factors rather than the properties of the fuel. Thus, with the exception of increase in rate due to an increase in surface area, pre-oxidation of the fuel has little effect on the corrosion rate

  17. Biological Signal Processing with a Genetic Toggle Switch

    Science.gov (United States)

    Hillenbrand, Patrick; Fritz, Georg; Gerland, Ulrich

    2013-01-01

    Complex gene regulation requires responses that depend not only on the current levels of input signals but also on signals received in the past. In digital electronics, logic circuits with this property are referred to as sequential logic, in contrast to the simpler combinatorial logic without such internal memory. In molecular biology, memory is implemented in various forms such as biochemical modification of proteins or multistable gene circuits, but the design of the regulatory interface, which processes the input signals and the memory content, is often not well understood. Here, we explore design constraints for such regulatory interfaces using coarse-grained nonlinear models and stochastic simulations of detailed biochemical reaction networks. We test different designs for biological analogs of the most versatile memory element in digital electronics, the JK-latch. Our analysis shows that simple protein-protein interactions and protein-DNA binding are sufficient, in principle, to implement genetic circuits with the capabilities of a JK-latch. However, it also exposes fundamental limitations to its reliability, due to the fact that biological signal processing is asynchronous, in contrast to most digital electronics systems that feature a central clock to orchestrate the timing of all operations. We describe a seemingly natural way to improve the reliability by invoking the master-slave concept from digital electronics design. This concept could be useful to interpret the design of natural regulatory circuits, and for the design of synthetic biological systems. PMID:23874595

  18. Denitrification in an anoxic rotating biological contactor under two carbon/nitrogen ratios

    OpenAIRE

    Cortez, Susana; Teixeira, P; Oliveira, Rosário; Mota, M.

    2008-01-01

    The aim of the present work was to compare the performance of an anoxic bench-scale rotating biological contactor (RBC), in terms of the denitrification process, applied to treat synthetic wastewater under two carbon/nitrogen (C/N) molar ratios (1.5 and 3). The average removal efficiency in terms of nitrogen-nitrate was of about 90.4% at a C/N=1.5 lowering to 73.7% at a C/N=3. Considering carbon-acetate removal an overall efficiency of 82.0% and 63.6% was attained at a C/N rati...

  19. Processing biological literature with customizable Web services supporting interoperable formats

    OpenAIRE

    Rak, Rafal; Batista-Navarro, Riza Theresa; Carter, Jacob; Rowley, Andrew; Ananiadou, Sophia

    2014-01-01

    Web services have become a popular means of interconnecting solutions for processing a body of scientific literature. This has fuelled research on high-level data exchange formats suitable for a given domain and ensuring the interoperability of Web services. In this article, we focus on the biological domain and consider four interoperability formats, BioC, BioNLP, XMI and RDF, that represent domain-specific and generic representations and include well-established as well as emerging specific...

  20. Processed Vietnamese ginseng: Preliminary results in chemistry and biological activity

    OpenAIRE

    Le, Thi Hong Van; Lee, Seo Young; Kim, Tae Ryong; Kim, Jae Young; Kwon, Sung Won; NGUYEN, NGOC KHOI; Park, Jeong Hill; Nguyen, Minh Duc

    2013-01-01

    Background This study was carried out to investigate the effect of the steaming process on chemical constituents, free radical scavenging activity, and antiproliferative effect of Vietnamese ginseng. Methods Samples of powdered Vietnamese ginseng were steamed at 120°C for various times and their extracts were subjected to chemical and biological studies. Results Upon steaming, contents of polar ginsenosides, such as Rb1, Rc, Rd, Re, and Rg1, were rapidly decreased, whereas less polar ginsenos...

  1. Optimizing processes for biological nitrogen removal in Nakivubo wetland, Uganda

    OpenAIRE

    Kyambadde, Joseph

    2005-01-01

    The ability of Nakivubo wetland (which has performed tertiary water treatment for Kampala city for the past 40 years) to respond to pollution and to protect the water quality of Inner Murchison Bay of Lake Victoria was investigated. The aim of this study was to assess the capacity of Nakivubo wetland to remove nitrogen from the wastewater after its recent encroachment and modification, in order to optimize biological nitrogen removal processes using constructed wetland technology. Field studi...

  2. CHARACTERISATION OF BIOLOGICALLY PRETREATED RAW MATERIALS FOR BIOPULPING PROCESS

    OpenAIRE

    Susy Albert; Amee Padhiar

    2012-01-01

    Biopulping, the treatment of wood chips by white rot fungi and subsequent chip refining is envisioned as a method for saving energy and making a stronger paper product. The present study aims to find suitability of two fungal isolates Phellinus pectinatus and Daedaleopsis confragosa for the process of biopulping and the characteristion of the biologically pretreated raw materials for biopulping. Two combinations of raw samples, Bamboo: wood shavings and Bamboo: wood shavings: Sorghum halepens...

  3. Diverse Biological Functions of Extracellular Collagen Processing Enzymes

    OpenAIRE

    Trackman, Philip C.

    2005-01-01

    Collagens are abundant proteins in higher organisms, and are formed by a complex biosynthetic pathway involving intracellular and extracellular post-translational modifications. Starting from simple soluble precursors, this interesting pathway produces insoluble functional fibrillar and non-fibrillar elements of the extracellular matrix. The present review highlights recent progress and new insights into biological regulation of extracellular procollagen processing, and some novel functions o...

  4. Modeling studies of biological gas desulfurization under haloalkaline conditions

    OpenAIRE

    Klok, J.B.M.

    2015-01-01

    Abstract Biogas, synthesis and natural gas streams often require treatment because of the presence of gaseous hydrogen sulphide (H2S). About 25 years ago, a biotechnological gas treatment process was developed as an alternative to the conventionally applied technologies. This process is known as the Thiopaq process and offers a number of advantages compared to the existing physical-chemical processes. Depending on the process conditions, H2S is oxidized to elemental bio-sulfur (90-94 mol%) an...

  5. Environment. Biological processing of wastes; Environnement. Traitement biologique des dechets

    Energy Technology Data Exchange (ETDEWEB)

    Gourdon, R. [Institut National des Sciences Appliquees, INSA, Lab. d' Analyse Environnementale des Procedes et des Systemes Industriels, 69 - Villeurbanne (France)

    2001-01-01

    The main principle of the biological processing is the utilization of microbial activities by a control stimulation in order to decrease the wastes harmful effects, or by an energetic valorization. This paper deals with the solid wastes or the sludges. After a short presentation of the concerned wastes, their metabolism and their consequences, the author details two treatments: the composting (aerobic) and the methanization (anaerobic). The last part is devoted to the alcoholic fermentation and the industrial wastes (non agricultural) processing. (A.L.B.)

  6. Concentrated flow erosion processes under planned fire

    Science.gov (United States)

    Langhans, Christoph; Noske, Phil; Van Der Sant, Rene; Lane, Patrick; Sheridan, Gary

    2016-04-01

    The role of wildfire in accelerating erosion rates for a certain period after fire has been well documented. Much less information is available on the erosion rates and processes after planned fires that typically burn at much lower intensity. Observational evidence, and some studies in southern and southeastern Australia suggest that erosion after planned fire can be significant if rainfall intensities exceed critical intensities and durations. Understanding erosion processes and rates under these event conditions is of critical importance for planning of burn locations away from critical human assets such as water supplies and infrastructure. We conducted concentrated flow experiments with the purpose to understand what critical conditions are required for significant erosion to occur on planned burn hillslopes. Concentrated flow runon was applied on pre-wetted, unbounded plots of 10 m at rates of 0.5, 1, 1.5 and 2 L/s, with three replicates for each rates applied at 1m distance of each other. The experiments were carried out at three sites within one burn perimeter with different burn severities ranging from low to high, with two replicates at each site. Runon was applied until an apparent steady state in runoff was reached at the lower plot boundary, which was typically between 0.7 and 2.5 minutes. The experiments were filmed and erosion depth was measured by survey methods at 1m intervals. Soil surface properties, including potential sediment trapping objects were measured and surveyed near the plots. We found that fire severity increased plot scale average erosion depth significantly even as experiments were typically much shorter on the high severity plots. Unit stream power was a good predictor for average erosion depth. Uncontrolled for variations in soil surface properties explained process behaviour: finer, ash rich surface material was much less likely to be trapped by fallen, charred branches and litter than coarser, ash-depleted material. Furthermore

  7. Energy landscape exploration of the folding processes of biological molecules

    Science.gov (United States)

    Engel, Megan Clare

    For decades, scientists from every discipline have struggled to understand the mechanism of biological self-assembly, which allows proteins and nucleic acids to fold reliably into functional three-dimensional structures. Such an understanding may hold the key to eliminating diseases such as Alzheimer's and Parkinson's and to effective protein engineering. The current best framework for describing biological folding processes is that of statistical mechanical energy landscape theory, and one of the most promising experimental techniques for exploring molecular energy landscapes is single molecule force spectroscopy (SMFS), in which molecules are mechanically denatured. Theoretical advances have enabled the extraction of complete energy landscape profiles from SMFS data. Here, SMFS experiments performed using laser optical tweezers are analyzed to yield the first ever full landscape profile for an RNA pseudoknot. Further, a promising novel landscape reconstruction technique is validated for the first time using experimental data from a DNA hairpin.

  8. Radiation processing of biological tissues for nuclear disaster management

    International Nuclear Information System (INIS)

    A number of surgical procedures require tissue substitutes to repair or replace damaged or diseased tissues. Biological tissues from human donor like bone, skin, amniotic membrane and other soft tissues can be used for repair or reconstruction of the injured part of the body. Tissues from human donor can be processed and banked for orthopaedic, spinal, trauma and other surgical procedures. Allograft tissues provide an excellent alternative to autografts. The use of allograft tissue avoids the donor site morbidity and reduces the operating time, expense and trauma associated with the acquisition of autografts. Further, allografts have the added advantage of being available in large quantities. This has led to a global increase in allogeneic transplantation and development of tissue banking. However, the risk of infectious disease transmission via tissue allografts is a major concern. Therefore, tissue allografts should be sterilized to make them safe for clinical use. Radiation processing has well appreciated technological advantages and is the most suitable method for sterilization of biological tissues. Radiation processed biological tissues can be provided by the tissue banks for the management of injuries due to a nuclear disaster. A nuclear detonation will result in a large number of casualties due to the heat, blast and radiation effects of the weapon. Skin dressings or skin substitutes like allograft skin, xenograft skin and amniotic membrane can be used for the treatment of thermal burns and radiation induced skin injuries. Bone grafts can be employed for repairing fracture defects, filling in destroyed regions of bone, management of open fractures and joint injuries. Radiation processed tissues have the potential to repair or reconstruct damaged tissues and can be of great assistance in the treatment of injuries due to the nuclear weapon. (author)

  9. Characteristics of a Dairy Process under Uncertainty

    DEFF Research Database (Denmark)

    Cheng, Hongyuan; Friis, Alan

    2007-01-01

    set of physical property models for diary products were developed and built into PRO/II system. Milk products viscosity and process system pressure drop were employed as the process characteristic parameters to determine a process operation window. The flexibility of the operation window vertexes was...... evaluated with a minimization of the process pasteurization and cooling temperatures through vertex enumeration method. The quantitative analysis of the dairy process established a framework in developing of different flexible units, such as integrated milk and milk-based product productions, multi......-task process unit, etc....

  10. Achieving and maintaining biological nitrogen removal via nitrite under normal conditions

    Institute of Scientific and Technical Information of China (English)

    CUI You-wei; PENG Yong-zhen; GAN Xiang-qing; YE Liu; WANG Ya-yi

    2005-01-01

    The principal aim of this paper is to develop an approach to realize stable biological nitrogen removal via nitrite under normal conditions. Validation of the new method was established on laboratory-scale experiments applying the sequencing batch reactor(SBR)activated sludge process to domestic wastewater with low C/N ratio. The addition of sodium chloride(NaCl) to influent was established to achieve nitrite build-up. The high nitrite accumulation, depending on the salinity in influent and the application duration of salt, was obtained in SBRs treating saline wastewater. The maintenance results indicated that the real-time SBRs can maintain stable nitrite accumulation, but conversion from shorter nitrification-denitrification to full nitrification-denitrification was observed after some operation cycles in the other SBR with fixed-time control. The presented method is valuable to offer a solution to realize and to maintain nitrogen removal via nitrite under normal conditions.

  11. Biological responses to environmental heterogeneity under future ocean conditions.

    Science.gov (United States)

    Boyd, Philip W; Cornwall, Christopher E; Davison, Andrew; Doney, Scott C; Fourquez, Marion; Hurd, Catriona L; Lima, Ivan D; McMinn, Andrew

    2016-08-01

    Organisms are projected to face unprecedented rates of change in future ocean conditions due to anthropogenic climate-change. At present, marine life encounters a wide range of environmental heterogeneity from natural fluctuations to mean climate change. Manipulation studies suggest that biota from more variable marine environments have more phenotypic plasticity to tolerate environmental heterogeneity. Here, we consider current strategies employed by a range of representative organisms across various habitats - from short-lived phytoplankton to long-lived corals - in response to environmental heterogeneity. We then discuss how, if and when organismal responses (acclimate/migrate/adapt) may be altered by shifts in the magnitude of the mean climate-change signal relative to that for natural fluctuations projected for coming decades. The findings from both novel climate-change modelling simulations and prior biological manipulation studies, in which natural fluctuations are superimposed on those of mean change, provide valuable insights into organismal responses to environmental heterogeneity. Manipulations reveal that different experimental outcomes are evident between climate-change treatments which include natural fluctuations vs. those which do not. Modelling simulations project that the magnitude of climate variability, along with mean climate change, will increase in coming decades, and hence environmental heterogeneity will increase, illustrating the need for more realistic biological manipulation experiments that include natural fluctuations. However, simulations also strongly suggest that the timescales over which the mean climate-change signature will become dominant, relative to natural fluctuations, will vary for individual properties, being most rapid for CO2 (~10 years from present day) to 4 decades for nutrients. We conclude that the strategies used by biota to respond to shifts in environmental heterogeneity may be complex, as they will have to

  12. [Hadamard Transform NIR Spectrometer for the Biological Processes].

    Science.gov (United States)

    Liu, Peng; Li, Kai; Zeng, Li-bo; Wu, Qiong-shui

    2015-09-01

    Monitoring the consumption of nutrients of biological process helps control the growth environment of the microbes. It ensures the microbes are always in the best growing conditions, so as to maximize the yield of the target product. To monitor the content of glycerol, methanol and glucose in yeast culture medium, a new NIR spectrometer was developed which is based on Hadamard Transform (HT)technique. It uses the Near IR probe, which was designed all by ourselves, to collect the spectral signals, and uses the Digital Micro-mirror Devices(DMD) to complete the coding and modulation of Hadamard template. With self-developed software, aiming at spectral acquisition and spectral processing, the spectrometer has realized the real-time monitoring. The designs of optical path, Near IR probe, hardware circuit and software modules are given. Through lots of experiments, it turns out that the value of stray light is 0.875% and the volatility is ±4.28% in this spectrometer. The spectrometer shows high precision in a series of tests which means it totally meets the requirements of monitoring the biological processes. PMID:26669185

  13. Process for the biological purification of waste water

    DEFF Research Database (Denmark)

    1992-01-01

    Process for the biological purification of waste water by the activated sludge method, the waste water being mixed with recirculated sludge and being subjected to an anaerobic treatment, before the waste water thus treated is alternately subjected to anoxic and aerobic treatments and the waste...... water thus treated is led into a clarification zone for settling sludge, which sludge is recirculated in order to be mixed with the crude waste water. As a result, a simultaneous reduction of the content both of nitrogen and phosphorus of the waste water is achieved....

  14. CHARACTERISATION OF BIOLOGICALLY PRETREATED RAW MATERIALS FOR BIOPULPING PROCESS

    Directory of Open Access Journals (Sweden)

    Susy Albert

    2012-12-01

    Full Text Available Biopulping, the treatment of wood chips by white rot fungi and subsequent chip refining is envisioned as a method for saving energy and making a stronger paper product. The present study aims to find suitability of two fungal isolates Phellinus pectinatus and Daedaleopsis confragosa for the process of biopulping and the characteristion of the biologically pretreated raw materials for biopulping. Two combinations of raw samples, Bamboo: wood shavings and Bamboo: wood shavings: Sorghum halepense culm were prepared and subjected to four different pretreatment. Daedaleopsis confragosa was found to be effective in biopulping with a supplement of Potato dextrose broth medium to the raw material.

  15. Number size distribution measurements of biological aerosols under contrasting environments and seasons from southern tropical India

    Science.gov (United States)

    Valsan, Aswathy; Cv, Biju; Krishna, Ravi; Huffman, Alex; Poschl, Ulrich; Gunthe, Sachin

    2016-04-01

    Biological aerosols constitute a wide range of dead and alive biological materials and structures that are suspended in the atmosphere. They play an important role in the atmospheric physical, chemical and biological processes and health of living being by spread of diseases among humans, plants, and, animals. The atmospheric abundance, sources, physical properties of PBAPs as compared to non-biological aerosols, however, is poorly characterized. Though omnipresent, their concentration and composition exhibit large spatial and temporal variations depending up on their sources, land-use, and local meteorology. The Indian tropical region, which constitutes approximately 18% of the world's total population exhibits vast geographical extend and experiences a distinctive meteorological phenomenon by means of Indian Summer Monsoon (IMS). Thus, the sources, properties and characteristics of biological aerosols are also expected to have significant variations over the Indian subcontinent depending upon the location and seasons. Here we present the number concentration and size distribution of Fluorescent Biological Aerosol Particles (FBAP) from two contrasting locations in Southern tropical India measured during contrasting seasons using Ultra Violet Aerodynamic Particle Sizer (UV-APS). Measurements were carried out at a pristine high altitude continental site, Munnar (10.09 N, 77.06 E; 1605 m asl) during two contrasting seasons, South-West Monsoon (June-August, 2014) and winter (Jan - Feb, 2015) and in Chennai, a coastal urban area, during July - November 2015. FBAP concentrations at both the locations showed large variability with higher concentrations occurring at Chennai. Apart from regional variations, the FBAP concentrations also exhibited variations over two different seasons under the same environmental condition. In Munnar the FBAP concentration increased by a factor of four from South-West Monsoon to winter season. The average size distribution of FBAP at both

  16. Complex systems of biological interest stability under ionising radiations

    International Nuclear Information System (INIS)

    This PhD work presents the study of stability of molecular systems of biological interest in the gas phase after interaction with ionising radiations. The use of ionising radiation can probe the physical chemistry of complex systems at the molecular scale and thus consider their intrinsic properties. Beyond the fundamental aspect, this work is part of the overall understanding of radiation effects on living organisms and in particular the use of ionizing radiation in radiotherapy. Specifically, this study focused on the use of low-energy multiply charged ions (tens of keV) provided by the GANIL (Caen), which includes most of the experiments presented. In addition, experiments using VUV photons were also conducted at synchrotron ELETTRA (Trieste, Italy). The bio-molecular systems studied are amino acids and nucleic acid constituents. Using an experimental crossed beams device allows interaction between biomolecules and ionising radiation leads mainly to the ionization and fragmentation of the system. The study of its relaxation dynamics is by time-of-flight mass spectrometry coupled to a coincidences measurements method. It is shown that an approach combining experiment and theory allows a detailed study of the fragmentation dynamics of complex systems. The results indicate that fragmentation is generally governed by the Coulomb repulsion but the intramolecular rearrangements involve specific relaxation mechanisms. (author)

  17. Understanding the basic biology underlying the flavor world of children

    Directory of Open Access Journals (Sweden)

    Julie A. MENNELLA, Alison K. VENTURA

    2010-12-01

    Full Text Available Health organizations worldwide recommend that adults and children minimize intakes of excess energy and salty, sweet, and fatty foods (all of which are highly preferred tastes and eat diets richer in whole grains, low- and non- fat dairy products, legumes, fish, lean meat, fruits, and vegetables (many of which taste bitter. Despite such recommendations and the well-established benefits of these foods to human health, adults are not complying, nor are their children. A primary reason for this difficulty is the remarkably potent rewarding properties of the tastes and flavors of foods high in sweetness, saltiness, and fatness. While we cannot easily change children’s basic ingrained biology of liking sweets and avoiding bitterness, we can modulate their flavor preferences by providing early exposure, starting in utero, to a wide variety of flavors within healthy foods, such as fruits, vegetables, and whole grains. Because the flavors of foods mothers eat during pregnancy and lactation also flavor amniotic fluid and breast milk and become preferred by infants, pregnant and lactating women should widen their food choices to include as many flavorful and healthy foods as possible. These experiences, combined with repeated exposure to nutritious foods and flavor variety during the weaning period and beyond, should maximize the chances that children will select and enjoy a healthier diet [Current Zoology 56 (6: 834–841, 2010].

  18. Adoption: biological and social processes linked to adaptation.

    Science.gov (United States)

    Grotevant, Harold D; McDermott, Jennifer M

    2014-01-01

    Children join adoptive families through domestic adoption from the public child welfare system, infant adoption through private agencies, and international adoption. Each pathway presents distinctive developmental opportunities and challenges. Adopted children are at higher risk than the general population for problems with adaptation, especially externalizing, internalizing, and attention problems. This review moves beyond the field's emphasis on adoptee-nonadoptee differences to highlight biological and social processes that affect adaptation of adoptees across time. The experience of stress, whether prenatal, postnatal/preadoption, or during the adoption transition, can have significant impacts on the developing neuroendocrine system. These effects can contribute to problems with physical growth, brain development, and sleep, activating cascading effects on social, emotional, and cognitive development. Family processes involving contact between adoptive and birth family members, co-parenting in gay and lesbian adoptive families, and racial socialization in transracially adoptive families affect social development of adopted children into adulthood. PMID:24016275

  19. A novel process of dye wastewater treatment by linking advanced chemical oxidation with biological oxidation

    Directory of Open Access Journals (Sweden)

    Zou Haiming

    2015-12-01

    Full Text Available Dye wastewater is one of typically non-biodegradable industrial effluents. A new process linking Fenton’s oxidation with biological oxidation proposed in this study was investigated to degrade the organic substances from real dye wastewater. During the combination process, the Fenton’s oxidation process can reduce the organic load and enhance biodegradability of dye wastewater, which is followed by biological aerated filter (BAF system to further remove organic substances in terms of discharge requirement. The results showed that 97.6% of chemical oxygen demand (COD removal by the combination process was achieved at the optimum process parameters: pH of 3.5, H2O2 of 2.0 mL/L, Fe(II of 500 mg/L, 2.0 h treatment time in the Fenton’s oxidation process and hydraulic retention time (HRT of 5 h in the BAF system. Under these conditions, COD concentration of effluent was 72.6 mg/L whereas 3020 mg/L in the influent, thus meeting the requirement of treated dye wastewater discharge performed by Chinese government (less than 100 mg/L. These results obtained here suggest that the new process combining Fenton’s oxidation with biological oxidation may provide an economical and effective alternative for treatment of non-biodegradable industrial wastewater.

  20. Optimal Size for Maximal Energy Efficiency in Information Processing of Biological Systems Due to Bistability

    CERN Document Server

    Zhang, Chi; Wang, Long-Fei; Yue, Yuan; Yu, Lian-Chun

    2015-01-01

    Energy efficiency is closely related to the evolution of biological systems and is important to their information processing. In this paper, we calculated the excitation probability of a simple model of a bistable biological unit in response to pulsatile inputs, and its spontaneous excitation rate due to noise perturbation. Then we analytically calculated the mutual information, energy cost, and energy efficiency of an array of these bistable units. We found that the optimal number of units could maximize this array's energy efficiency in encoding pulse inputs, which depends on the fixed energy cost. We conclude that demand for energy efficiency in biological systems may strongly influence the size of these systems under the pressure of natural selection.

  1. Chemical analysis and biological testing of materials from the EDS coal liquefaction process: a status report

    Energy Technology Data Exchange (ETDEWEB)

    Later, D.W.; Pelroy, R.A.; Wilson, B.W.

    1984-05-01

    Representative process materials were obtained from the EDS pilot plant for chemical and biological analyses. These materials were characterized for biological activity and chemical composition using a microbial mutagenicity assay and chromatographic and mass spectrometric analytical techniques. The two highest boiling distillation cuts, as well as process solvent (PS) obtained from the bottoms recycle mode operation, were tested for initiation of mouse skin tumorigenicity. All three materials were active; the crude 800/sup 0 +/F cut was substantially more potent than the crude bottoms recycle PS or 750 to 800/sup 0/F distillate cut. Results from chemical analyses showed the EDS materials, in general, to be more highly alkylated and have higher hydroaromatic content than analogous SRC II process materials (no in-line process hydrogenation) used for comparison. In the microbial mutagenicity assays the N-PAC fractions showed greater activity than did the aliphatic hydrocarbon, hydroxy-PAH, or PAH fractions, although mutagenicity was detected in certain PAH fractions by a modified version of the standard microbial mutagenicity assay. Mutagenic activities for the EDS materials were lower, overall, than those for the corresponding materials from the SRC II process. The EDS materials produced under different operational modes had distinguishable differences in both their chemical constituency and biological activity. The primary differences between the EDS materials studied here and their SRC II counterparts used for comparison are most likely attributable to the incorporation of catalytic hydrogenation in the EDS process. 27 references, 28 figures, 27 tables.

  2. Biologic Data of Cynomolgus Monkeys Maintained under Laboratory Conditions

    Science.gov (United States)

    Rosso, Marilena Caterina; Badino, Paola; Ferrero, Giulio; Costa, Roberto; Cordero, Francesca; Steidler, Stephanie

    2016-01-01

    The cynomolgus monkey (Macaca fascicularis) is a well-known non-human primate species commonly used in non-clinical research. It is important to know basal clinical pathology parameters in order to have a reference for evaluating any potential treatment-induced effects, maintaining health status among animals and, if needed, evaluating correct substantiative therapies. In this study, data from 238 untreated cynomolgus monkeys (119 males and 119 females of juvenile age, 2.5 to 3.5 years) kept under laboratory conditions were used to build up a reference database of clinical pathology parameters. Twenty-two hematology markers, 24 clinical chemistry markers and two blood coagulation parameters were analyzed. Gender-related differences were evaluated using statistical analyses. To assess the possible effects of stress induced by housing or handling involved in treatment procedures, 78 animals (35 males and 35 females out of 238 juvenile monkeys and four adult males and four adult females) were used to evaluate cortisol, corticosterone and behavioral assessment over time. Data were analyzed using a non-parametric statistical test and machine learning approaches. Reference clinical pathology data obtained from untreated animals may be extremely useful for investigators employing cynomolgus monkeys as a test system for non-clinical safety studies. PMID:27280447

  3. Biological reductive dechlorination of tetrachloroethylene and trichloroethylene to ethylene under methanogenic conditions

    International Nuclear Information System (INIS)

    A biological process for remediation of groundwater contaminated with tetrachloroethylene (PCE) and trichloroethylene (TCE) can only be applied if the transformation products are environmentally acceptable. Studies with enrichment cultures of PCE- and TCE-degrading microorganisms provide evidence that, under methanogenic conditions, mixed cultures are able to completely dechlorinate PCE and TCE to ethylene, a product which is environmentally acceptable. Radiotracer studies with [14C]PCE indicated that [14C]ethylene was the terminal product; significant conversion to 14CO2 or 14CH4 was not observed. The rate-limiting step in the pathway appeared to be conversion of vinyl chloride to ethylene. To sustain reductive dechlorination of PCE and TCE, it was necessary to supply an electron donor; methanol was the most effective, although hydrogen, formate, acetate, and glucose also served. Studies with the inhibitor 2-bromoethanesulfonate suggested that methanogens played a key role in the observed biotransformations of PCE and TCE

  4. Learning Strategies Under the Process Writing Approach

    Institute of Scientific and Technical Information of China (English)

    肖青芝

    2008-01-01

    Learning strategies play an important role in second language writing.It is even believed by some linguists that experienced writers and novice writers differ mainly in their writing strategies instead of language proficiency.Within the theoretical framework of the process writing approach,this article introduces the writing strategies with all attempt to increase students'awareness of strategy use and improve their English writing.

  5. Continuously monitored barrier options under Markov processes

    OpenAIRE

    Aleksandar Mijatovic; Martijn Pistorius

    2009-01-01

    In this paper we present an algorithm for pricing barrier options in one-dimensional Markov models. The approach rests on the construction of an approximating continuous-time Markov chain that closely follows the dynamics of the given Markov model. We illustrate the method by implementing it for a range of models, including a local Levy process and a local volatility jump-diffusion. We also provide a convergence proof and error estimates for this algorithm.

  6. Biological Processes Discovered by High-Throughput Sequencing.

    Science.gov (United States)

    Reon, Brian J; Dutta, Anindya

    2016-04-01

    Advances in DNA and RNA sequencing technologies have completely transformed the field of genomics. High-throughput sequencing (HTS) is now a widely used and accessible technology that allows scientists to sequence an entire transcriptome or genome in a timely and cost-effective manner. Application of HTS techniques has led to many key discoveries, including the identification of long noncoding RNAs, microDNAs, a family of small extrachromosomal circular DNA species, and tRNA-derived fragments, which are a group of small non-miRNAs that are derived from tRNAs. Furthermore, public sequencing repositories provide unique opportunities for laboratories to parse large sequencing databases to identify proteins and noncoding RNAs at a scale that was not possible a decade ago. Herein, we review how HTS has led to the discovery of novel nucleic acid species and uncovered new biological processes during the course. PMID:26828742

  7. Monitoring Biological Modes in a Bioreactor Process by Computer Simulation

    Directory of Open Access Journals (Sweden)

    Samia Semcheddine

    2015-12-01

    Full Text Available This paper deals with the general framework of fermentation system modeling and monitoring, focusing on the fermentation of Escherichia coli. Our main objective is to develop an algorithm for the online detection of acetate production during the culture of recombinant proteins. The analysis the fermentation process shows that it behaves like a hybrid dynamic system with commutation (since it can be represented by 5 nonlinear models. We present a strategy of fault detection based on residual generation for detecting the different actual biological modes. The residual generation is based on nonlinear analytical redundancy relations. The simulation results show that the several modes that are occulted during the bacteria cultivation can be detected by residuals using a nonlinear dynamic model and a reduced instrumentation.

  8. Biclustering with Flexible Plaid Models to Unravel Interactions between Biological Processes.

    Science.gov (United States)

    Henriques, Rui; Madeira, Sara C

    2015-01-01

    Genes can participate in multiple biological processes at a time and thus their expression can be seen as a composition of the contributions from the active processes. Biclustering under a plaid assumption allows the modeling of interactions between transcriptional modules or biclusters (subsets of genes with coherence across subsets of conditions) by assuming an additive composition of contributions in their overlapping areas. Despite the biological interest of plaid models, few biclustering algorithms consider plaid effects and, when they do, they place restrictions on the allowed types and structures of biclusters, and suffer from robustness problems by seizing exact additive matchings. We propose BiP (Biclustering using Plaid models), a biclustering algorithm with relaxations to allow expression levels to change in overlapping areas according to biologically meaningful assumptions (weighted and noise-tolerant composition of contributions). BiP can be used over existing biclustering solutions (seizing their benefits) as it is able to recover excluded areas due to unaccounted plaid effects and detect noisy areas non-explained by a plaid assumption, thus producing an explanatory model of overlapping transcriptional activity. Experiments on synthetic data support BiP's efficiency and effectiveness. The learned models from expression data unravel meaningful and non-trivial functional interactions between biological processes associated with putative regulatory modules. PMID:26357312

  9. Ontology of physics for biology: representing physical dependencies as a basis for biological processes

    Science.gov (United States)

    2013-01-01

    Background In prior work, we presented the Ontology of Physics for Biology (OPB) as a computational ontology for use in the annotation and representations of biophysical knowledge encoded in repositories of physics-based biosimulation models. We introduced OPB:Physical entity and OPB:Physical property classes that extend available spatiotemporal representations of physical entities and processes to explicitly represent the thermodynamics and dynamics of physiological processes. Our utilitarian, long-term aim is to develop computational tools for creating and querying formalized physiological knowledge for use by multiscale “physiome” projects such as the EU’s Virtual Physiological Human (VPH) and NIH’s Virtual Physiological Rat (VPR). Results Here we describe the OPB:Physical dependency taxonomy of classes that represent of the laws of classical physics that are the “rules” by which physical properties of physical entities change during occurrences of physical processes. For example, the fluid analog of Ohm’s law (as for electric currents) is used to describe how a blood flow rate depends on a blood pressure gradient. Hooke’s law (as in elastic deformations of springs) is used to describe how an increase in vascular volume increases blood pressure. We classify such dependencies according to the flow, transformation, and storage of thermodynamic energy that occurs during processes governed by the dependencies. Conclusions We have developed the OPB and annotation methods to represent the meaning—the biophysical semantics—of the mathematical statements of physiological analysis and the biophysical content of models and datasets. Here we describe and discuss our approach to an ontological representation of physical laws (as dependencies) and properties as encoded for the mathematical analysis of biophysical processes. PMID:24295137

  10. Photoinduced catalytic synthesis of biologically important metabolites from formaldehyde and ammonia under plausible "prebiotic" conditions

    Science.gov (United States)

    Delidovich, I. V.; Taran, O. P.; Simonov, A. N.; Matvienko, L. G.; Parmon, V. N.

    2011-08-01

    The article analyzes new and previously reported data on several catalytic and photochemical processes yielding biologically important molecules. UV-irradiation of formaldehyde aqueous solution yields acetaldehyde, glyoxal, glycolaldehyde and glyceraldehyde, which can serve as precursors of more complex biochemically relevant compounds. Photolysis of aqueous solution of acetaldehyde and ammonium nitrate results in formation of alanine and pyruvic acid. Dehydration of glyceraldehyde catalyzed by zeolite HZSM-5-17 yields pyruvaldehyde. Monosaccharides are formed in the course of the phosphate-catalyzed aldol condensation reactions of glycolaldehyde, glyceraldehyde and formaldehyde. The possibility of the direct synthesis of tetroses, keto- and aldo-pentoses from pure formaldehyde due to the combination of the photochemical production of glycolahyde and phosphate-catalyzed carbohydrate chain growth is demonstrated. Erythrulose and 3-pentulose are the main products of such combined synthesis with selectivity up to 10%. Biologically relevant aldotetroses, aldo- and ketopentoses are more resistant to the photochemical destruction owing to the stabilization in hemiacetal cyclic forms. They are formed as products of isomerization of erythrulose and 3-pentulose. The conjugation of the concerned reactions results in a plausible route to the formation of sugars, amino and organic acids from formaldehyde and ammonia under presumed 'prebiotic' conditions.

  11. Processing biological literature with customizable Web services supporting interoperable formats.

    Science.gov (United States)

    Rak, Rafal; Batista-Navarro, Riza Theresa; Carter, Jacob; Rowley, Andrew; Ananiadou, Sophia

    2014-01-01

    Web services have become a popular means of interconnecting solutions for processing a body of scientific literature. This has fuelled research on high-level data exchange formats suitable for a given domain and ensuring the interoperability of Web services. In this article, we focus on the biological domain and consider four interoperability formats, BioC, BioNLP, XMI and RDF, that represent domain-specific and generic representations and include well-established as well as emerging specifications. We use the formats in the context of customizable Web services created in our Web-based, text-mining workbench Argo that features an ever-growing library of elementary analytics and capabilities to build and deploy Web services straight from a convenient graphical user interface. We demonstrate a 2-fold customization of Web services: by building task-specific processing pipelines from a repository of available analytics, and by configuring services to accept and produce a combination of input and output data interchange formats. We provide qualitative evaluation of the formats as well as quantitative evaluation of automatic analytics. The latter was carried out as part of our participation in the fourth edition of the BioCreative challenge. Our analytics built into Web services for recognizing biochemical concepts in BioC collections achieved the highest combined scores out of 10 participating teams. Database URL: http://argo.nactem.ac.uk. PMID:25006225

  12. Exploiting graphics processing units for computational biology and bioinformatics.

    Science.gov (United States)

    Payne, Joshua L; Sinnott-Armstrong, Nicholas A; Moore, Jason H

    2010-09-01

    Advances in the video gaming industry have led to the production of low-cost, high-performance graphics processing units (GPUs) that possess more memory bandwidth and computational capability than central processing units (CPUs), the standard workhorses of scientific computing. With the recent release of generalpurpose GPUs and NVIDIA's GPU programming language, CUDA, graphics engines are being adopted widely in scientific computing applications, particularly in the fields of computational biology and bioinformatics. The goal of this article is to concisely present an introduction to GPU hardware and programming, aimed at the computational biologist or bioinformaticist. To this end, we discuss the primary differences between GPU and CPU architecture, introduce the basics of the CUDA programming language, and discuss important CUDA programming practices, such as the proper use of coalesced reads, data types, and memory hierarchies. We highlight each of these topics in the context of computing the all-pairs distance between instances in a dataset, a common procedure in numerous disciplines of scientific computing. We conclude with a runtime analysis of the GPU and CPU implementations of the all-pairs distance calculation. We show our final GPU implementation to outperform the CPU implementation by a factor of 1700. PMID:20658333

  13. The method validation step of biological dosimetry accreditation process

    International Nuclear Information System (INIS)

    One of the missions of the Laboratory of Biological Dosimetry (L.D.B.) of the Institute for Radiation and Nuclear Safety (I.R.S.N.) is to assess the radiological dose after an accidental overexposure suspicion to ionising radiation, by using radio-induced changes of some biological parameters. The 'gold standard' is the yield of dicentrics observed in patients lymphocytes, and this yield is converted in dose using dose effect relationships. This method is complementary to clinical and physical dosimetry, for medical team in charge of the patients. To obtain a formal recognition of its operational activity, the laboratory decided three years ago, to require an accreditation, by following the recommendations of both 17025 General Requirements for the Competence of Testing and Calibration Laboratories and 19238 Performance criteria for service laboratories performing biological dosimetry by cyto-genetics. Diagnostics, risks analysis were realized to control the whole analysis process leading to documents writing. Purchases, personnel department, vocational training were also included in the quality system. Audits were very helpful to improve the quality system. One specificity of this technique is that it is not normalized therefore apart from quality management aspects, several technical points needed some validations. An inventory of potentially influent factors was carried out. To estimate their real effect on the yield of dicentrics, a Placket-Burman experimental design was conducted. The effect of seven parameters was tested: the BUdr (bromodeoxyuridine), PHA (phytohemagglutinin) and colcemid concentration, the culture duration, the incubator temperature, the blood volume and the medium volume. The chosen values were calculated according to the uncertainties on the way they were measured i.e. pipettes, thermometers, test tubes. None of the factors has a significant impact on the yield of dicentrics. Therefore the uncertainty linked to their use was considered as

  14. Biological treatment of refinery spent caustics under halo-alkaline conditions

    NARCIS (Netherlands)

    Graaff, de M.; Bijmans, M.F.M.; Abbas, B.; Euverink, G.J.W.; Muyzer, G.; Janssen, A.J.H.

    2011-01-01

    The present research demonstrates the biological treatment of refinery sulfidic spent caustics in a continuously fed system under halo-alkaline conditions (i.e. pH 9.5; Na(+)= 0.8M). Experiments were performed in identical gas-lift bioreactors operated under aerobic conditions (80-90% saturation) at

  15. Biological treatment of refinery spent caustics under halo-alkaline conditions

    NARCIS (Netherlands)

    M. de Graaff; M.F.M. Bijmans; B. Abbas; G.J.W. Euverink; G. Muijzer; A.J.H. Janssen

    2011-01-01

    The present research demonstrates the biological treatment of refinery sulfidic spent caustics in a continuously fed system under halo-alkaline conditions (i.e. pH 9.5; Na+ = 0.8 M). Experiments were performed in identical gas-lift bioreactors operated under aerobic conditions (80-90% saturation) at

  16. Biological treatment of refinery spent caustics under halo-alkaline conditions

    NARCIS (Netherlands)

    Graaff, Marco de; Bijmans, Martijn F.M.; Abbas, Ben; Euverink, Gert-J.W.; Muyzer, Gerard; Janssen, Albert J.H.

    2011-01-01

    The present research demonstrates the biological treatment of refinery sulfidic spent caustics in a continuously fed system under halo-alkaline conditions (i.e. pH 9.5; Na+ = 0.8 M). Experiments were performed in identical gas-lift bioreactors operated under aerobic conditions (80–90% saturation) at

  17. 78 FR 55326 - Determinations Regarding Use of Chemical Weapons in Syria Under the Chemical and Biological...

    Science.gov (United States)

    2013-09-10

    ... Determinations Regarding Use of Chemical Weapons in Syria Under the Chemical and Biological Weapons Control and..., 22 U.S.C. 5604(a), that the Government of Syria has used chemical weapons in violation of... Under Secretary of State for Political Affairs: (1) Determined that the Government of Syria has...

  18. Biologically inspired large scale chemical sensor arrays and embedded data processing

    Science.gov (United States)

    Marco, S.; Gutiérrez-Gálvez, A.; Lansner, A.; Martinez, D.; Rospars, J. P.; Beccherelli, R.; Perera, A.; Pearce, T.; Vershure, P.; Persaud, K.

    2013-05-01

    Biological olfaction outperforms chemical instrumentation in specificity, response time, detection limit, coding capacity, time stability, robustness, size, power consumption, and portability. This biological function provides outstanding performance due, to a large extent, to the unique architecture of the olfactory pathway, which combines a high degree of redundancy, an efficient combinatorial coding along with unmatched chemical information processing mechanisms. The last decade has witnessed important advances in the understanding of the computational primitives underlying the functioning of the olfactory system. EU Funded Project NEUROCHEM (Bio-ICT-FET- 216916) has developed novel computing paradigms and biologically motivated artefacts for chemical sensing taking inspiration from the biological olfactory pathway. To demonstrate this approach, a biomimetic demonstrator has been built featuring a large scale sensor array (65K elements) in conducting polymer technology mimicking the olfactory receptor neuron layer, and abstracted biomimetic algorithms have been implemented in an embedded system that interfaces the chemical sensors. The embedded system integrates computational models of the main anatomic building blocks in the olfactory pathway: the olfactory bulb, and olfactory cortex in vertebrates (alternatively, antennal lobe and mushroom bodies in the insect). For implementation in the embedded processor an abstraction phase has been carried out in which their processing capabilities are captured by algorithmic solutions. Finally, the algorithmic models are tested with an odour robot with navigation capabilities in mixed chemical plumes

  19. Biological Treatment of tannery wastewater using activated sludge process

    International Nuclear Information System (INIS)

    A study was conducted to evaluate the feasibility of Activated Sludge Process (ASP) for the treatment of tannery wastewater and to develop a simple design criteria under local conditions. A bench scale model comprising of an aeration tank and final clarifier was used for this purpose. The model was operated continuously for 267 days. Settled tannery wastewater was used as influent to the aeration tank. Five days Biochemical Oxygen Demand (BOD5) and Chemical Oxygen Demand (COD) of the influent and effluent were measured to find process efficiency at various mixed liquor volatile suspended solids (MLVSS) and hydraulic detention time. The results of the study demonstrated that an efficiency of above 90% and 80% for BOD5 and COD, respectively could be obtained if the ASP is operated at an MLVSS concentration of 3500 mg/L keeping an aeration time of 12 hours. (author)

  20. Underlying Principles of Natural Selection in Network Evolution: Systems Biology Approach

    OpenAIRE

    Bor-Sen Chen; Wei-Sheng Wu

    2007-01-01

    Systems biology is a rapidly expanding field that integrates diverse areas of science such as physics, engineering, computer science, mathematics, and biology toward the goal of elucidating the underlying principles of hierarchical metabolic and regulatory systems in the cell, and ultimately leading to predictive understanding of cellular response to perturbations. Because post-genomics research is taking place throughout the tree of life, comparative approaches offer a way for combining data...

  1. Next generation tools to accelerate the synthetic biology process.

    Science.gov (United States)

    Shih, Steve C C; Moraes, Christopher

    2016-05-16

    Synthetic biology follows the traditional engineering paradigm of designing, building, testing and learning to create new biological systems. While such approaches have enormous potential, major challenges still exist in this field including increasing the speed at which this workflow can be performed. Here, we present recently developed microfluidic tools that can be used to automate the synthetic biology workflow with the goal of advancing the likelihood of producing desired functionalities. With the potential for programmability, automation, and robustness, the integration of microfluidics and synthetic biology has the potential to accelerate advances in areas such as bioenergy, health, and biomaterials. PMID:27146265

  2. G-L\\'{e}vy Processes under Sublinear Expectations

    OpenAIRE

    Hu, Mingshang; Peng, Shige

    2009-01-01

    We introduce G-L\\'{e}vy processes which develop the theory of processes with independent and stationary increments under the framework of sublinear expectations. We then obtain the L\\'{e}vy-Khintchine formula and the existence for G-L\\'{e}vy processes. We also introduce G-Poisson processes.

  3. Dynamic phases in control and information processing biological circuits

    Science.gov (United States)

    Vaikuntanathan, Suriyanarayanan

    2015-03-01

    Recent work using the mathematical framework of large deviation theory has shown that fluctuations about the steady state can have a particularly rich structure even in extremely simple non-equilibrium systems [Phys. Rev. E. 89, 062108, 2014]. In certain instances the fluctuations can encode the presence of a dynamical phase with properties distinct from those of the steady state of the system. The transition between these two regimes is akin to a first order thermodynamic phase transition. Specifically, it implies an extreme sensitivity of the system to changes in certain sets of parameters. I will show that such dynamical phase transitions can serve as a general organizing principle to understand biological circuits that are involved in information processing and control. I will focus on two specific examples: adaptation control in E. coli chemotaxis and ultra sensitive response of the E. coli flagella motor, to illustrate these calculations. This work also elucidates the role played by energy dissipation in ensuring control and suggests general guidelines for the construction of robust non equilibrium circuits that perform various specified functions.

  4. Oilfield wastewater treatment by combined microfiltration and biological processes.

    Science.gov (United States)

    Campos, J C; Borges, R M H; Oliveira Filho, A M; Nobrega, R; Sant'Anna, G L

    2002-01-01

    This work deals with the treatment of offshore oilfield wastewater from the Campos Basin (Rio de Janeiro State, Brazil). After coarse filtration, this high saline wastewater was microfiltrated through mixed cellulose ester (MCE) membranes, resulting in average removals of COD, TOC, O&G and phenols of 35%, 25%, 92% and 35%, respectively. The permeate effluent was fed into a 1-L air-lift reactor containing polystyrene particles of 2mm diameter, used as support material. This reactor was operated for 210 days, at three hydraulic retention times (HRT): 48, 24 and 12h. Even when operated at the lowest HRT (12 h), removal efficiencies of 65% COD, 80% TOC, 65% phenols and 40% ammonium were attained. The final effluent presented COD and TOC values of 230 and 55 mg/L, respectively. Results obtained by gas chromatography analyses and toxicity tests with Artemia salina showed that a significant improvement in the effluent's quality was achieved after treatment by the combined (microfiltration/biological) process. PMID:11767743

  5. Crowdsourcing and curation: perspectives from biology and natural language processing.

    Science.gov (United States)

    Hirschman, Lynette; Fort, Karën; Boué, Stéphanie; Kyrpides, Nikos; Islamaj Doğan, Rezarta; Cohen, Kevin Bretonnel

    2016-01-01

    Crowdsourcing is increasingly utilized for performing tasks in both natural language processing and biocuration. Although there have been many applications of crowdsourcing in these fields, there have been fewer high-level discussions of the methodology and its applicability to biocuration. This paper explores crowdsourcing for biocuration through several case studies that highlight different ways of leveraging 'the crowd'; these raise issues about the kind(s) of expertise needed, the motivations of participants, and questions related to feasibility, cost and quality. The paper is an outgrowth of a panel session held at BioCreative V (Seville, September 9-11, 2015). The session consisted of four short talks, followed by a discussion. In their talks, the panelists explored the role of expertise and the potential to improve crowd performance by training; the challenge of decomposing tasks to make them amenable to crowdsourcing; and the capture of biological data and metadata through community editing.Database URL: http://www.mitre.org/publications/technical-papers/crowdsourcing-and-curation-perspectives. PMID:27504010

  6. Microbiology and atmospheric processes: chemical interactions of primary biological aerosols

    Directory of Open Access Journals (Sweden)

    L. Deguillaume

    2008-07-01

    Full Text Available This paper discusses the influence of primary biological aerosols (PBA on atmospheric chemistry and vice versa through microbiological and chemical properties and processes. Several studies have shown that PBA represent a significant fraction of air particulate matter and hence affect the microstructure and water uptake of aerosol particles. Moreover, airborne micro-organisms, namely fungal spores and bacteria, can transform chemical constituents of the atmosphere by metabolic activity. Recent studies have emphasized the viability of bacteria and metabolic degradation of organic substances in cloud water. On the other hand, the viability and metabolic activity of airborne micro-organisms depend strongly on physical and chemical atmospheric parameters such as temperature, pressure, radiation, pH value and nutrient concentrations. In spite of recent advances, however, our knowledge of the microbiological and chemical interactions of PBA in the atmosphere is rather limited. Further targeted investigations combining laboratory experiments, field measurements, and modelling studies will be required to characterize the chemical feedbacks, microbiological activities at the air/snow/water interface supplied to the atmosphere.

  7. Open Markov processes: A compositional perspective on non-equilibrium steady states in biology

    CERN Document Server

    Pollard, Blake S

    2016-01-01

    In recent work, Baez, Fong and the author introduced a framework for describing Markov processes equipped with a detailed balanced equilibrium as open systems of a certain type. These `open Markov processes' serve as the building blocks for more complicated processes. In this paper, we describe the potential application of this framework in the modeling of biological systems as open systems maintained away from equilibrium. We show that non-equilibrium steady states emerge in open systems of this type, even when the rates of the underlying process are such that a detailed balanced equilibrium is permitted. It is shown that these non-equilibrium steady states minimize a quadratic form which we call `dissipation.' In some circumstances, the dissipation is approximately equal to the rate of change of relative entropy plus a correction term. On the other hand, Prigogine's principle of minimum entropy production generally fails for non-equilibrium steady states. We use a simple model of membrane transport to illus...

  8. Determination of Biological Treatability Processes of Textile Wastewater and Implementation of a Fuzzy Logic Model

    Directory of Open Access Journals (Sweden)

    Harun Akif Kabuk

    2015-01-01

    Full Text Available This study investigated the biological treatability of textile wastewater. For this purpose, a membrane bioreactor (MBR was utilized for biological treatment after the ozonation process. Due to the refractory organic contents of textile wastewater that has a low biodegradability capacity, ozonation was implemented as an advanced oxidation process prior to the MBR system to increase the biodegradability of the wastewater. Textile wastewater, oxidized by ozonation, was fed to the MBR at different hydraulic retention times (HRT. During the process, color, chemical oxygen demand (COD, and biochemical oxygen demand (BOD removal efficiencies were monitored for 24-hour, 12-hour, 6-hour, and 3-hour retention times. Under these conditions, 94% color, 65% COD, and 55% BOD removal efficiencies were obtained in the MBR system. The experimental outputs were modeled with multiple linear regressions (MLR and fuzzy logic. MLR results suggested that color removal is more related to COD removal relative to BOD removal. A surface map of this issue was prepared with a fuzzy logic model. Furthermore, fuzzy logic was employed to the whole modeling of the biological system treatment. Determination coefficients for COD, BOD, and color removal efficiencies were 0.96, 0.97, and 0.92, respectively.

  9. Photo-activated biological processes as quantum measurements

    CERN Document Server

    Imamoglu, Atac

    2014-01-01

    We outline a framework for describing photo-activated biological reactions as generalized quantum measurements of external fields, for which the biological system takes on the role of a quantum meter. By using general arguments regarding the Hamiltonian that describes the measurement interaction, we identify the cases where it is essential for a complex chemical or biological system to exhibit non-equilibrium quantum coherent dynamics in order to achieve the requisite functionality. We illustrate the analysis by considering measurement of the solar radiation field in photosynthesis and measurement of the earth's magnetic field in avian magnetoreception.

  10. Carbonate Beaches: A Balance Between Biological and Physical Processes

    Science.gov (United States)

    Nairn, R.; Risk, M.

    2004-12-01

    Carbonate beaches are a unique example of the interaction between biological processes, creating the sediments, and physical processes, moving and often removing the sediments. On the sediment supply side, carbonate sediments are born, not made. They exist in dynamic equilibrium between production and destruction. Following the creation of carbonate sediment in coral reef and lagoon environments, the sediments are moved shoreward to the beach, transport along the shore and sometimes, eventually lost offshore, often as the result of tropical storms. Comprehensive studies of the balance between the supply and loss of carbonate sediments and beach dynamics have been completed for the islands of Mauritius and Barbados. Field studies and remote sensing (Compact Airborne Spectrometry Imaging) have been applied to develop carbonate sediment production rates for a range of reef and lagoon conditions. Using GIS, these production rates have been integrated to determine sediment supply rates for different segments of the coastline. 1-D and 2-D models of waves, hydrodynamics, sediment transport and morphodynamics were set-up and tested against observed beach response to storm events or a sequence of storm events. These complex deterministic models are not suitable for application over periods of decades. However, it was possible to characterize storm events by the extent of sand loss, and relate this to key descriptive factors for groups of storm events, thereby encapsulating the erosion response. A long-term predictive tool for evaluating beach erosion and accretion response, over a period of several decades, was developed by combining the supply rates for carbonate sediment and the encapsulated representation of the loss rates through physical processes. The ability of this predictive tool was successfully tested against observed long term beach evolution along sections of the coast in Barbados and Mauritius using air photo analysis in GIS for shoreline change over periods

  11. Treatment of Slightly Polluted Wastewater in an Oil Refinery Using a Biological Aerated Filter Process

    Institute of Scientific and Technical Information of China (English)

    XIE Wenyu; ZHONG Li; CHEN Jianjun

    2007-01-01

    The slightly polluted wastewater from oil refinery contains some COD, oil pollutants and suspended solids (SS). A small-scale fixed film biological aerated filter (BAF) process was used to treat the wastewater. The influences of hydraulic retention time (HRT), air/water volume flow ratio and backwashing cycle on treatment efficiencies were investigated. The wastewater was treated by the BAF process under optimal conditions: the HRT of backwashing cycle of every 4-7 days. The results showed that the average removal efficiency of COD, oil pollutants and SS was 84.5%, 94.0% and 83.4%, respectively. And the average effluent concentration of COD, oil pollutants and SS was 12.5, 0.27, 14.5the BAF process is a suitable and highly efficient method to treat the wastewater.

  12. Students’ Ability to Solve Process-diagram Problems in Secondary Biology Education

    NARCIS (Netherlands)

    M. Kragten; W. Admiraal; G. Rijlaarsdam

    2015-01-01

    Process diagrams are important tools in biology for explaining processes such as protein synthesis, compound cycles and the like. The aim of the present study was to measure the ability to solve process-diagram problems in biology and its relationship with prior knowledge, spatial ability and workin

  13. Biological mechanisms underlying the role of physical fitness in health and resilience

    OpenAIRE

    Silverman, Marni N.; Deuster, Patricia A.

    2014-01-01

    Physical fitness, achieved through regular exercise and/or spontaneous physical activity, confers resilience by inducing positive psychological and physiological benefits, blunting stress reactivity, protecting against potentially adverse behavioural and metabolic consequences of stressful events and preventing many chronic diseases. In this review, we discuss the biological mechanisms underlying the beneficial effects of physical fitness on mental and physical health. Physical fitness appear...

  14. Foundational Concepts and Underlying Theories for Majors in "Biochemistry and Molecular Biology"

    Science.gov (United States)

    Tansey, John T.; Baird, Teaster, Jr.; Cox, Michael M.; Fox, Kristin M.; Knight, Jennifer; Sears, Duane; Bell, Ellis

    2013-01-01

    Over the past two years, through an NSF RCN UBE grant, the ASBMB has held regional workshops for faculty members and science educators from around the country that focused on identifying: 1) core principles of biochemistry and molecular biology, 2) essential concepts and underlying theories from physics, chemistry, and mathematics, and 3)…

  15. Diffusion and association processes in biological systems: theory, computation and experiment

    OpenAIRE

    Mereghetti Paolo; Kokh Daria; McCammon J Andrew; Wade Rebecca C

    2011-01-01

    Abstract Macromolecular diffusion plays a fundamental role in biological processes. Here, we give an overview of recent methodological advances and some of the challenges for understanding how molecular diffusional properties influence biological function that were highlighted at a recent workshop, BDBDB2, the second Biological Diffusion and Brownian Dynamics Brainstorm.

  16. Removal of disinfection by-products formation potential by biologically intensified process

    Institute of Scientific and Technical Information of China (English)

    AN Dong; LI Wei-guang; CUI Fu-yi; HE Xin; ZHANG Jin-song

    2005-01-01

    The removal of disinfection by-products formation potential(DBPFP) in artificially intensified biological activated carbon(IBAC) process which is developed on the basis of traditional ozone granular activated carbon was evaluated. By IBAC removals of 31% and 68% for THMFP and HAAFP were obtained respectively. Under identical conditions, the removals of the same substances were 4% and 32% respectively only by the granular activated carbon(GAC) process. Compared with GAC, the high removal rates of the two formed potential substances were due to the increasing of bioactivity of the media and the synergistic capabilities of biological degradation cooperating with activated carbon adsorption of organic compounds. A clear linear correlation ( R2 = 0.9562 and R2 = 0.9007) between DOC HAAFP removal rate and Empty Bed Contact Time(EBCT) of IBAC process was observed, while that between THMFP removal rate and EBCT of GAC was R2 = 0.9782. In addition certain linear correlations between THMFP, HAAFP and UV254 ( R2 = 0.855 and R2 = 0.7702) were found for the treated water. For IBAC process there are also more advantages such as long backwashing cycle time, low backwashing intensity and prolonging activated carbon lifetime and so on.

  17. Interferometric laser detection of nanomechanical perturbations in biological media under ablation conditions

    Energy Technology Data Exchange (ETDEWEB)

    Morales-Bonilla, S; Torres-Torres, C; Urriolagoitia-Sosa, G; Hernandez-Gomez, L H; Urriolagoitia-Calderon, G, E-mail: crstorres@yahoo.com.mx [Instituto Politecnico Nacional Seccion de Estudios de Posgrado e Investigacion Escuela Superior de Ingenieria Mecanica y Electrica Unidad Profesional Adolfo Lopez Mateos ' Zacatenco' Col. Lindavista, CP 07738, Mexico, D. F. (Mexico)

    2011-07-19

    This article has to do with the development of a reliable and sensitive non-invasive laser technique for assessing damage of structures and systems involved in laser ablation processes. The optical response of a Michelson Interferometer in combination with a Measuring Reflectance System has been analyzed in order to identify the stability of the mechanical properties of the sample, the physical perturbations associated with the systems and the environment where the target is contained. This test includes the use of a cyan laser system with 10 mW at 488 nm wavelength as optical source. We found out that with the inclusion of an optical feedback in a sensing system it is possible to determine the modification of the physical properties exhibited by a biological medium under sharp ablation conditions with a high accuracy degree. The results reported in this research have potential applications related to the amount of light intensity that can be tolerated by human tissue. A wide array of disciplines, such as medicine, mechanical industry and optical instrumentation can benefit from this ultrafast optical feedback for controlling high intensity laser signals. Collateral damage of tissue around the laser irradiated zones can be reduced by using intelligent lasers systems with ultra-short temporal response.

  18. Simulating Biological and Non-Biological Motion

    Science.gov (United States)

    Bruzzo, Angela; Gesierich, Benno; Wohlschlager, Andreas

    2008-01-01

    It is widely accepted that the brain processes biological and non-biological movements in distinct neural circuits. Biological motion, in contrast to non-biological motion, refers to active movements of living beings. Aim of our experiment was to investigate the mechanisms underlying mental simulation of these two movement types. Subjects had to…

  19. Evolution of Marine Organisms under Climate Change at Different Levels of Biological Organisation

    Directory of Open Access Journals (Sweden)

    Ben P. Harvey

    2014-11-01

    Full Text Available Research to date has suggested that both individual marine species and ecological processes are expected to exhibit diverse responses to the environmental effects of climate change. Evolutionary responses can occur on rapid (ecological timescales, and yet studies typically do not consider the role that adaptive evolution will play in modulating biological responses to climate change. Investigations into such responses have typically been focused at particular biological levels (e.g., cellular, population, community, often lacking interactions among levels. Since all levels of biological organisation are sensitive to global climate change, there is a need to elucidate how different processes and hierarchical interactions will influence species fitness. Therefore, predicting the responses of communities and populations to global change will require multidisciplinary efforts across multiple levels of hierarchy, from the genetic and cellular to communities and ecosystems. Eventually, this may allow us to establish the role that acclimatisation and adaptation will play in determining marine community structures in future scenarios.

  20. Computational modeling of STED microscopy through multiple biological cells under one- and two-photon excitation

    Science.gov (United States)

    Mark, Andrew E.; Davis, Mitchell A.; Starosta, Matthew S.; Dunn, Andrew K.

    2015-03-01

    While superresolution optical microscopy techniques afford enhanced resolution for biological applications, they have largely been used to study structures in isolated cells. We use the FDTD method to simulate the propagation of focused beams for STED microscopy through multiple biological cells. We model depletion beams that provide 2D and 3D confinement of the fluorescence spot and assess the effective PSF of the system as a function of focal depth. We compare the relative size of the STED effective PSF under one- and two-photon excitation. PSF calculations suggest that imaging is possible up to the maximum simulation depth if the fluorescence emission remains detectable.

  1. dNSP: a biologically inspired dynamic Neural network approach to Signal Processing.

    Science.gov (United States)

    Cano-Izquierdo, José Manuel; Ibarrola, Julio; Pinzolas, Miguel; Almonacid, Miguel

    2008-09-01

    The arriving order of data is one of the intrinsic properties of a signal. Therefore, techniques dealing with this temporal relation are required for identification and signal processing tasks. To perform a classification of the signal according with its temporal characteristics, it would be useful to find a feature vector in which the temporal attributes were embedded. The correlation and power density spectrum functions are suitable tools to manage this issue. These functions are usually defined with statistical formulation. On the other hand, in biology there can be found numerous processes in which signals are processed to give a feature vector; for example, the processing of sound by the auditory system. In this work, the dNSP (dynamic Neural Signal Processing) architecture is proposed. This architecture allows representing a time-varying signal by a spatial (thus statical) vector. Inspired by the aforementioned biological processes, the dNSP performs frequency decomposition using an analogical parallel algorithm carried out by simple processing units. The architecture has been developed under the paradigm of a multilayer neural network, where the different layers are composed by units whose activation functions have been extracted from the theory of Neural Dynamic [Grossberg, S. (1988). Nonlinear neural networks principles, mechanisms and architectures. Neural Networks, 1, 17-61]. A theoretical study of the behavior of the dynamic equations of the units and their relationship with some statistical functions allows establishing a parallelism between the unit activations and correlation and power density spectrum functions. To test the capabilities of the proposed approach, several testbeds have been employed, i.e. the frequencial study of mathematical functions. As a possible application of the architecture, a highly interesting problem in the field of automatic control is addressed: the recognition of a controlled DC motor operating state. PMID:18579344

  2. Memory Processes Underlying Misinformation Effects in Child Witnesses.

    Science.gov (United States)

    Holliday, Robyn E.; Reyna, Valerie F.; Hayes, Brett K.

    2002-01-01

    Reviews empirical findings that misinformation effects in children are the product of automatic or unconscious and intentional or conscious processes. Outlines findings that show developmental change in cognitive processes underlying acceptance of misinformation in the absence of overall changes with age in the probability of reporting a…

  3. Modelling GAC adsorption of biologically pre-treated process water from hydrothermal carbonization.

    Science.gov (United States)

    Fettig, J; Liebe, H

    2015-01-01

    Granular-activated carbon (GAC) adsorption of biologically pre-treated process waters from hydrothermal carbonization (HTC) of different materials was investigated. Overall, isotherms showed that most of the dissolved organic substances are strongly adsorbable while the non-adsorbable fractions are small. The equilibrium data were modelled by using five fictive components to represent the organic matter. Mean film transfer coefficients and mean intraparticle diffusivities were derived from short-column and batch kinetic test data, respectively. Breakthrough curves in GAC columns could be predicted satisfactorily by applying the film-homogeneous diffusion model and using the equilibrium and kinetic parameters determined from batch tests. Thus, the approach is suited to model GAC adsorption of HTC process water under technical-scale conditions. PMID:26114274

  4. Treatment of waste metalworking fluid by a hybrid ozone-biological process.

    Science.gov (United States)

    Jagadevan, Sheeja; Graham, Nigel J; Thompson, Ian P

    2013-01-15

    In metal machining processes, the regulation of heat generation and lubrication at the contact point are achieved by application of a fluid referred to as metalworking fluid (MWF). MWFs inevitably become operationally exhausted with age and intensive use, which leads to compromised properties, thereby necessitating their safe disposal. Disposal of this waste through a biological route is an increasingly attractive option, since it is effective with relatively low energy demands. However, successful biological treatment is challenging since MWFs are chemically complex, and include biocides specifically to retard microbial deterioration whilst the fluids are operational. In this study remediation of the recalcitrant component of a semi-synthetic MWF by a novel hybrid ozone-bacteriological treatment, was investigated. The hybrid treatment proved to be effective and reduced the chemical oxygen demand by 72% (26.9% and 44.9% reduction after ozonation and biological oxidation respectively). Furthermore, a near-complete degradation of three non-biodegradable compounds (viz. benzotriazole, monoethanolamine, triethanolamine), commonly added as biocides and corrosion inhibitors in MWF formulations, under ozonation was observed. PMID:23274939

  5. Biological Signal Processing with a Genetic Toggle Switch

    OpenAIRE

    Patrick Hillenbrand; Georg Fritz; Ulrich Gerland

    2013-01-01

    Complex gene regulation requires responses that depend not only on the current levels of input signals but also on signals received in the past. In digital electronics, logic circuits with this property are referred to as sequential logic, in contrast to the simpler combinatorial logic without such internal memory. In molecular biology, memory is implemented in various forms such as biochemical modification of proteins or multistable gene circuits, but the design of the regulatory interface, ...

  6. Reactome: a database of reactions, pathways and biological processes

    OpenAIRE

    Croft, David; O’Kelly, Gavin; Wu, Guanming; Haw, Robin; Gillespie, Marc; Matthews, Lisa; Caudy, Michael; Garapati, Phani; Gopinath, Gopal; Jassal, Bijay; Jupe, Steven; Kalatskaya, Irina; Mahajan, Shahana; May, Bruce; Ndegwa, Nelson

    2010-01-01

    Reactome (http://www.reactome.org) is a collaboration among groups at the Ontario Institute for Cancer Research, Cold Spring Harbor Laboratory, New York University School of Medicine and The European Bioinformatics Institute, to develop an open source curated bioinformatics database of human pathways and reactions. Recently, we developed a new web site with improved tools for pathway browsing and data analysis. The Pathway Browser is an Systems Biology Graphical Notation (SBGN)-based visualiz...

  7. Biologically Based Methods for Pest Management in Agriculture under Changing Climates: Challenges and Future Directions

    Directory of Open Access Journals (Sweden)

    Casper Nyamukondiwa

    2012-11-01

    Full Text Available The current changes in global climatic regimes present a significant societal challenge, affecting in all likelihood insect physiology, biochemistry, biogeography and population dynamics. With the increasing resistance of many insect pest species to chemical insecticides and an increasing organic food market, pest control strategies are slowly shifting towards more sustainable, ecologically sound and economically viable options. Biologically based pest management strategies present such opportunities through predation or parasitism of pests and plant direct or indirect defense mechanisms that can all be important components of sustainable integrated pest management programs. Inevitably, the efficacy of biological control systems is highly dependent on natural enemy-prey interactions, which will likely be modified by changing climates. Therefore, knowledge of how insect pests and their natural enemies respond to climate variation is of fundamental importance in understanding biological insect pest management under global climate change. Here, we discuss biological control, its challenges under climate change scenarios and how increased global temperatures will require adaptive management strategies to cope with changing status of insects and their natural enemies.

  8. Research on rural sewage treatment using biological-ecological coupling process

    Directory of Open Access Journals (Sweden)

    Chang SHI

    2016-02-01

    Full Text Available Developing low-investment, low-energy consumption and low-maintenance sewage treatment process is important for sewage treatment in rural areas. An upflow anaerobic filter (UAF without energy consumption and a subsurface flow wetland (SFW are utilized as a biological-ecological coupling process to treat rural domestic sewage. The effect of the coupling process on treatment performance of domestic sewage under different hydraulic retention time (HRT is investigated. The removal of nitrogen and phosphorus in the SFW is improved by increasing plant density. The results show that the coupling process of UAF and SFW has no power consumption and is maintenance-free, suitable for rural sewage treatment; the removal of nitrogen and phosphorus mainly happens in the SFW phase; increasing the density of reed plants in the SFW can obviously enhance the capacity to remove nitrogen and phosphorus, and ensure that the efficient performance of the coupling process of UAF and SFW is stabilized in a high level. When the HRTs of UAF and SFW are 18 h and 3 d, respectively, the concentrations of COD, ammonia nitrogen, total nitrogen and total phosphorus in the final effluent treated by UAF and SFW process are 44.07, 4.25, 13.36 and 0.44 mg/L, respectively, meeting the requirement of first grade class A in Discharge Standard of Pollutants for Municipal Wastewater Treatment Plant (GB 18918-2002.

  9. Diagnosis and optimization of the composting process in full-scale mechanical-biological treatment plants.

    Science.gov (United States)

    Baptista, Marco; Antunes, Fernando; Silveira, Ana

    2011-06-01

    The aims of this study were (i) to evaluate the performance of the composting process operation in full-scale mechanical-biological treatment (MBT) plants, (ii) to estimate their performance under optimized conditions and (iii) to propose specific guidelines on how to improve the efficiency of the composting process. To fulfil these objectives, a first-order kinetic model was used. This model was calibrated with experimental data to account for the limitations imposed by less-than-optimal environmental conditions during operation of the composting process. Data treatment and simulation showed that two of the three MBT plants studied were poorly operated. Optimization of process management with measures of simple practical implementation was estimated to be highly significant in these poorly managed plants, increasing performance by 103% in MBT1 and 53% in MBT2. In MBT3, the potential for optimization was estimated at 17%. Similar results were obtained from the analysis of other published data, suggesting that poor process management in MBT composting is widespread. These findings highlight the importance of having programmes for monitoring and optimizing process performance in full-scale composting systems. The procedures developed here are simple to apply and can routinely be implemented in full-scale plants. PMID:21216924

  10. Proliferation of diversified clostridial species during biological soil disinfestation incorporated with plant biomass under various conditions

    OpenAIRE

    Mowlick, Subrata; Takehara, Toshiaki; Kaku, Nobuo; Ueki, Katsuji; Ueki, Atsuko

    2012-01-01

    【Abstract】 Biological soil disinfestation (BSD) involves the anaerobic decomposition of plant biomass by microbial communities leads to control of plant pathogens. We analyzed bacterial communities in soil of a model experiment of BSD, as affected by biomass incorporation under various conditions, to find out the major anaerobic bacterial groups emerged after BSD treatments. The soil was treated with Brassica juncea plants, wheat bran or Avena strigosa plants, irrigated at 20% or 30% moisture...

  11. Background, progress and prospect of traditional knowledge under the Convention on Biological Diversity

    OpenAIRE

    Fuwei Zhao; Jianyong Wu; Dayuan Xue

    2013-01-01

    Due to its scientific value, economic potential, and social background basis, traditional knowledge (TK) is valued of great importance under the Convention on Biological Diversity (CBD) and by other international fora. The Convention has made enormous efforts for the protection of TK relevant to biodiversity. For instance, an ad hoc working group on Article 8(j) and related provisions was established; programmes of work and action plans on the implementation of Article 8(j) and related provis...

  12. MORPHOMETRIC CHARACTERISTIC OF RATS LIVER UNDER PRE-SLAUGHTER STRESS AND USAGE OF BIOLOGICALLY ACTIVE SUBSTANCES

    OpenAIRE

    Grabovskyi S. S.; Grabovska O. S.

    2015-01-01

    We have studied morphometric parameters of rats’ liver under stress conditions using the biologically active substances of plant and animal origin: spleen, Echinacea and Chinese lemon extracts, sprouted grain. Aerosol introduction of spleen extract to the rats feed for five days before slaughter was caused to liver morphological state moderate deviation, indicating the antistressors properties of polyamines contained in this extract. The results of model experiment on rats can be used ...

  13. Pulsed electrical discharges for medicine and biology techniques, processes, applications

    CERN Document Server

    Kolikov, Victor

    2015-01-01

    This book presents the application of pulsed electrical discharges in water and water dispersions of metal nanoparticles in medicine (surgery, dentistry, and oncology), biology, and ecology. The intensive electrical and shock waves represent a novel technique to destroy viruses and this way to  prepare anti-virus vaccines. The method of pulsed electrical discharges in water allows to decontaminate water from almost all known bacteria and spores of fungi being present in human beings. The nanoparticles used are not genotoxic and mutagenic. This book is useful for researchers and graduate students.

  14. Coupled model of physical and biological processes affecting maize pollination

    Science.gov (United States)

    Arritt, R.; Westgate, M.; Riese, J.; Falk, M.; Takle, E.

    2003-04-01

    Controversy over the use of genetically modified (GM) crops has led to increased interest in evaluating and controlling the potential for inadvertent outcrossing in open-pollinated crops such as maize. In response to this problem we have developed a Lagrangian model of pollen dispersion as a component of a coupled end-to-end (anther to ear) physical-biological model of maize pollination. The Lagrangian method is adopted because of its generality and flexibility: first, the method readily accommodates flow fields of arbitrary complexity; second, each element of the material being transported can be identified by its source, time of release, or other properties of interest. The latter allows pollen viability to be estimated as a function of such factors as travel time, temperature, and relative humidity, so that the physical effects of airflow and turbulence on pollen dispersion can be considered together with the biological aspects of pollen release and viability. Predicted dispersion of pollen compares well both to observations and to results from a simpler Gaussian plume model. Ability of the Lagrangian model to handle complex air flows is demonstrated by application to pollen dispersion in the vicinity of an agricultural shelter belt. We also show results indicating that pollen viability can be quantified by an "aging function" that accounts for temperature, humidity, and time of exposure.

  15. Network-based analysis of affected biological processes in type 2 diabetes models.

    Directory of Open Access Journals (Sweden)

    Manway Liu

    2007-06-01

    Full Text Available Type 2 diabetes mellitus is a complex disorder associated with multiple genetic, epigenetic, developmental, and environmental factors. Animal models of type 2 diabetes differ based on diet, drug treatment, and gene knockouts, and yet all display the clinical hallmarks of hyperglycemia and insulin resistance in peripheral tissue. The recent advances in gene-expression microarray technologies present an unprecedented opportunity to study type 2 diabetes mellitus at a genome-wide scale and across different models. To date, a key challenge has been to identify the biological processes or signaling pathways that play significant roles in the disorder. Here, using a network-based analysis methodology, we identified two sets of genes, associated with insulin signaling and a network of nuclear receptors, which are recurrent in a statistically significant number of diabetes and insulin resistance models and transcriptionally altered across diverse tissue types. We additionally identified a network of protein-protein interactions between members from the two gene sets that may facilitate signaling between them. Taken together, the results illustrate the benefits of integrating high-throughput microarray studies, together with protein-protein interaction networks, in elucidating the underlying biological processes associated with a complex disorder.

  16. Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3.

    Science.gov (United States)

    Moodie, Stuart; Le Novère, Nicolas; Demir, Emek; Mi, Huaiyu; Villéger, Alice

    2015-01-01

    The Systems Biological Graphical Notation (SBGN) is an international community effort for standardized graphical representations of biological pathways and networks. The goal of SBGN is to provide unambiguous pathway and network maps for readers with different scientific backgrounds as well as to support efficient and accurate exchange of biological knowledge between different research communities, industry, and other players in systems biology. Three SBGN languages, Process Description (PD), Entity Relationship (ER) and Activity Flow (AF), allow for the representation of different aspects of biological and biochemical systems at different levels of detail. The SBGN Process Description language represents biological entities and processes between these entities within a network. SBGN PD focuses on the mechanistic description and temporal dependencies of biological interactions and transformations. The nodes (elements) are split into entity nodes describing, e.g., metabolites, proteins, genes and complexes, and process nodes describing, e.g., reactions and associations. The edges (connections) provide descriptions of relationships (or influences) between the nodes, such as consumption, production, stimulation and inhibition. Among all three languages of SBGN, PD is the closest to metabolic and regulatory pathways in biological literature and textbooks, but its well-defined semantics offer a superior precision in expressing biological knowledge. PMID:26528561

  17. Lignocellulose Biomass: Constitutive Polymers. Biological Processes of Lignin Degradation

    International Nuclear Information System (INIS)

    The structure of the lignocellulosic materials and the chemical composition of their main constitutive polymers, cellulose, hemicelluloses and lignin are described. The most promising transformation processes according to the type of biomass considered: hardwood, softwood an herbaceous and the perspectives of biotechnological processes for bio pulping, bio bleaching and effluents decolorisation in the paper pulp industry are also discussed. (Author) 7 refs

  18. Aerobic Digestion. Biological Treatment Process Control. Instructor's Guide.

    Science.gov (United States)

    Klopping, Paul H.

    This unit on aerobic sludge digestion covers the theory of the process, system components, factors that affect the process performance, standard operational concerns, indicators of steady-state operations, and operational problems. The instructor's guide includes: (1) an overview of the unit; (2) lesson plan; (3) lecture outline (keyed to a set of…

  19. Modeling of DSBs Generation and Repair Process under Ion Radiation

    Institute of Scientific and Technical Information of China (English)

    QI Jin-peng; SHAO Shi-huang; XIE Jin-li; BAI Hui

    2007-01-01

    Under acute perturbations from outside, cell can trigger the self-defense mechanisms in fighting against these genome stresses. To simulate the investigation of the complicated mechanisms of cellular responding DNA damage at single cell level, a model of the double strand breaks (DSBs) generation and repair process is proposed under continuous effect of acute IR. Under different IR dose domains, this model can be used to simulate the complicated interactions among vital components within the cell, and the plausible outcomes of cellular response in fighting against DNA damage.

  20. A novel process of dye wastewater treatment by linking advanced chemical oxidation with biological oxidation

    OpenAIRE

    Zou Haiming; Ma Wanzheng; Wang Yan

    2015-01-01

    Dye wastewater is one of typically non-biodegradable industrial effluents. A new process linking Fenton’s oxidation with biological oxidation proposed in this study was investigated to degrade the organic substances from real dye wastewater. During the combination process, the Fenton’s oxidation process can reduce the organic load and enhance biodegradability of dye wastewater, which is followed by biological aerated filter (BAF) system to further remove organic substances in terms of dischar...

  1. International Integration Processes of Ukraine under Global Economy Transformation Conditions

    OpenAIRE

    Zhuravliov Oleksiy V.

    2013-01-01

    The article considers theoretical and methodological approaches to revelation of integration aspirations of Ukraine through development of innovation economy by means of establishment of an international financial centre. It considers a mechanism of integration processes of Ukraine under global economy transformation conditions, which envisages origination of the "butterfly effect", namely: worsening of conditions of integration processes with the Western Europe and "long-term recession" of E...

  2. Two-way feedback between biology and deep Earth processes

    Science.gov (United States)

    Sleep, N. H.; Pope, E.; Bird, D.

    2012-12-01

    The presence of the metamorphic products of banded iron formation and black shale indicate that the Earth teemed with life by the time of the earliest preserved rocks, ca. 3.85 Ga. Iron and sulfur-based anoxygenic photosynthesis with full carbon cycles was present by this time. The pH of the ocean was ~8. The lack of older rock record cloaks pre-biotic evolution and the origin of life. Nascent and early life obtained energy from chemical disequilibria in rocks rather than sunlight. Appraising putative rock pre-biological environments is difficult in that life has modified the composition of the atmosphere, the hydrosphere, and sedimentary rocks. It has greatly affected the composition of crystalline crustal rocks and measurably modified the mantle. Conversely, hard crustal rocks and the mantle likely sequester a very ancient record of last resort. Theory provides additional insight. The Earth's surface and interior cooled following the moon-forming impact. The oceans passed through conditions favored by thermophile organisms before becoming clement. Ocean pH was ~6 and bars of CO2 existed in the atmosphere. Subduction removed the CO2 into the mantle before the time of rock record. Serpentinite likely existed in land, tidal, and marine environments as it does today. Seafloor spreading and arc volcanism likely drove hydrothermal circulation. The late heavy bombardment occurred after ca. 4.1 Ga; low heat flow environments and hence habitable subsurface refugia existed. It is conceivable that one or a few ocean-boiling impacts left thermophile survivors in their wake. Overall, the molecular biology of extant life likely conserves features that relate to its earliest abodes.

  3. Processing and classification of biological images: Application to histology

    OpenAIRE

    Nunes, B.; Rato, Luis; Capela e Silva, F.; Rafael, A; Cabrita, AS

    2011-01-01

    This article deals with a histological problem by using image processing and feature extraction in images of renal tissues of rats and their classification through various methods such as: Bayesian inference, decision trees and support vector machines.

  4. Sustainable Production Process of Biological Mineral Feed Additives

    Directory of Open Access Journals (Sweden)

    Agnieszka Zielinska

    2009-01-01

    Full Text Available Problem statement: This study discussed the problem of accumulation of Zn and Cu in the topsoil as a result of application of mineral feed additives that possess low bioavailability in animal diet. The review considered the production process of mineral feed additives in which a product supplies microelements in highly bioavailable form. Enrichment of natural biomass of edible microalgae with microelement metal ions, which supply microelements of feeding significance in livestock diet, is considered in term of sustainable production. Approach: Production of microalgae-derived products as mineral feed additives requires elaboration of the processes for cultivation of alga, enrichment process and afterwards recovery of the enriched biomass from the solution to obtain liquid free of cells that could be reused in the next process. In this study membrane bioreactor was considered as a method for separation, both in photobioreactor (growth of microorganism as well as in the enrichment process. Results: Effort involved in thermal and chemical separation techniques is higher than that in mechanical techniques. Membrane bioreactors which are usually applied to treat wastewater, both industrial and domestic. This study discussed method to separate a valuable biomass of enriched microalgae and reuse the solution with residual metal ions that can be used once again in the subsequent biosorption process. Conclusion/Recommendation: Taking into consideration care about the environment it is better to apply membrane modules in the production process in terms of sustainable production. The proposed solution assumed the application of membrane modules as a separation step after enrichment process and biomass recovery.

  5. Biological Activity and Nutritional Properties of Processed Onion Products

    OpenAIRE

    Rolán Marín, María Eduvigis

    2009-01-01

    The first part of the PhD Thesis aimed to evaluate in vitro effects of food processing and preservation technologies on onion nutritional and technological properties. The first in vitro study analyzed ‘Figueres’ and ‘Recas’ onion by-products (juices, pastes and bagasses) stabilized by sterilization, pasteurization, and freezing technologies. Results demonstrated that processing ‘Recas’ onion wastes to obtain onion pastes and the subsequent stabilization with pasteurization trigge...

  6. Exploiting Graphics Processing Units for Computational Biology and Bioinformatics

    OpenAIRE

    Payne, Joshua L.; Nicholas A. Sinnott-Armstrong; Jason H Moore

    2010-01-01

    Advances in the video gaming industry have led to the production of low-cost, high-performance graphics processing units (GPUs) that possess more memory bandwidth and computational capability than central processing units (CPUs), the standard workhorses of scientific computing. With the recent release of general-purpose GPUs and Nvidia's GPU programming language, CUDA, graphics engines are being adopted widely in scientific computing applications, particularly in the fields of computational b...

  7. PROCESSING REFINERY WASTEWATER BY COAGULATION AND FLOTATION FOLLOWING BIOLOGICAL OXIDATION

    Science.gov (United States)

    Amoco Oil Company has a large refinery on the southern shore of Lake Michigan in Whiting, Indiana. It is a Class D refinery, lube subcategory, as classified under the EPA effluent Guidelines in the Federal Register of May 9, 1974. Because of the complexity and size of the refiner...

  8. Image Processing And Pattern Recognition With Applications To Marine Biological Images

    Science.gov (United States)

    Katsinis, C.; Poularikas, A. D.; Jeffries, H. P.

    1984-12-01

    Erosion and dilation of images were compared with other edge detection techniques on a variety of marine organisms. Under certain conditions the erosion and dilation technique gave better results. The critical problem resolved by our approach was low contrast imaging of randomly oriented objects that displayed random variations due to appendages that frequently appearred with marine biological samples. A multicomputer system was developed to perform image processing and morphological feature extraction on large number of samples. Emphasis was given to system reliability and expandability, allowing for performance at a reduced rate when one or more computers malfunctioned. The system currently operates with seven computers but can be expanded to contain up to seventeen. Classification accuracy on zooplankton samples from New England coastal waters was approximately 92%.

  9. OPTIMIZATION OF WHEAT BRAN MEDIUM PROCESSING CONDITIONS, ASSESSMENT OF BIOLOGICAL VALUE FOR SACCHAROMYCES

    Directory of Open Access Journals (Sweden)

    Victor Panfilov

    2015-09-01

    Full Text Available Biotechnological methods have perhaps the greatest potential in deep processing of renewable raw materials. Bioconversion of lignocelluloses materials substantially increases its bioavailability and effectiveness of consumption by microorganisms. The enzymatic and chemical hydrolysis of wheat bran under mild conditions are compared in this study.The purpose of this study was to define microbiological and biochemical criteria for the bioconversion. Enzymatic hydrolysis of extruded bran was held with three enzyme preparations usually used in the conversion of vegetable raw materials: “Viscoferm,” “Cellic HTec2,” and “Celloviridin G20x.” The central composite design was used for parameter optimization. Saccharomyces cerevisiae yeast was used for assessment of biological value of the slurry obtained. The content of crude protein of the product obtained was 1.9 times higher than the initial.

  10. Procedural Due Process Rights for Parents under the IDEA.

    Science.gov (United States)

    Osborne, Allan G., Jr.

    1995-01-01

    This analysis of parents' procedural due process rights under the Individuals with Disabilities Education Act examines the 1982 case of Hendrick Hudson Central School District Board of Education versus Rowley and reviews principles concerning parental rights, parental notification, procedural errors, the Individualized Education Program conference…

  11. biological effects of gamma irradiation under partial vacuum on the mediterranean fruit fly, Ceratitis capitata (wied.)

    International Nuclear Information System (INIS)

    Different biological effects of gamma irradiation (90 Gy) applied under partial vacuum (3 x 10-4 in Hg) to pupae of medfly, Ceratitis Capitata one or two days before adult eclosion were studied. Male sterility was higher when irradiation was applied to pupae in normal air pressure than that under partial vacuum. Female fecundity under partial vacuum was insignificantly higher than that in normal air pressure, but it was significantly higher in both treatment when compared with controls. Female fecundity was also significantly higher when pupae were treated one day before emergence than that when they were treated two days before emergence. Males treated under partial vacuum were significantly more competitive than those treated in normal air whether pupae were irradiated one day or 2 days before emergence was decreased by gamma irradiation when pupae were irradiated one or two days before eclosion, while when irradiation was conducted under partial vacuum, adult emergence was increased. Survival of males treated as pupae under partial vacuum was higher than that when pupae were irradiated in normal air. Females treated 2 days before emergence under partial vacuum lived longer than those irradiated in an atmosphere of normal air.3 figs, 1 tab

  12. Biological treatment processes for PCB contaminated soil at a site in Newfoundland

    International Nuclear Information System (INIS)

    SAIC Canada is conducting a study under the direction of a joint research and development contract between Public Works and Government Services Canada and Environment Canada to examine the biological options for treating PCB contaminated soil found at a containment cell at a former U.S. Military Base near Stephenville, Newfoundland. In particular, the study examines the feasibility of using indigenous microbes for the degradation of PCBs. The first phase of the study involved the testing of the microbes in a bioreactor. The second phase, currently underway, involves a complete evaluation of possible microbes for PCB degradation. It also involves further study into the biological process options for the site. Suitable indigenous and non-indigenous microbes for PCB dechlorination and biphenyl degradation are being identified and evaluated. In addition, the effectiveness and economics of microbial treatment in a conventional bioreactor is being evaluated. The conventional bioreactor used in this study is the two-phase partitioning bioreactor (TPPB) using a biopile process. Results thus far will be used to help Public Works and Government Services Canada to choose the most appropriate remedial technology. Preliminary results suggest that the use of soil classification could reduce the volume of soil requiring treatment. The soil in the containment cell contains microorganisms that could grow in isolation on biphenyl, naphthalene and potentially Aroclor 1254. Isolated native microbes were inoculated in the TPPB for growth. The TPPB was also run successfully under anaerobic conditions. Future work will involve lab-scale evaluation of microbes for PCB dechlorination and biphenyl degradation using both indigenous and non-indigenous microbes. The next phase of study may also involve field-scale demonstration of treatment methods. 2 refs., 3 tabs., 5 figs

  13. Reactome: a database of reactions, pathways and biological processes.

    Science.gov (United States)

    Croft, David; O'Kelly, Gavin; Wu, Guanming; Haw, Robin; Gillespie, Marc; Matthews, Lisa; Caudy, Michael; Garapati, Phani; Gopinath, Gopal; Jassal, Bijay; Jupe, Steven; Kalatskaya, Irina; Mahajan, Shahana; May, Bruce; Ndegwa, Nelson; Schmidt, Esther; Shamovsky, Veronica; Yung, Christina; Birney, Ewan; Hermjakob, Henning; D'Eustachio, Peter; Stein, Lincoln

    2011-01-01

    Reactome (http://www.reactome.org) is a collaboration among groups at the Ontario Institute for Cancer Research, Cold Spring Harbor Laboratory, New York University School of Medicine and The European Bioinformatics Institute, to develop an open source curated bioinformatics database of human pathways and reactions. Recently, we developed a new web site with improved tools for pathway browsing and data analysis. The Pathway Browser is an Systems Biology Graphical Notation (SBGN)-based visualization system that supports zooming, scrolling and event highlighting. It exploits PSIQUIC web services to overlay our curated pathways with molecular interaction data from the Reactome Functional Interaction Network and external interaction databases such as IntAct, BioGRID, ChEMBL, iRefIndex, MINT and STRING. Our Pathway and Expression Analysis tools enable ID mapping, pathway assignment and overrepresentation analysis of user-supplied data sets. To support pathway annotation and analysis in other species, we continue to make orthology-based inferences of pathways in non-human species, applying Ensembl Compara to identify orthologs of curated human proteins in each of 20 other species. The resulting inferred pathway sets can be browsed and analyzed with our Species Comparison tool. Collaborations are also underway to create manually curated data sets on the Reactome framework for chicken, Drosophila and rice. PMID:21067998

  14. Kinetic analysis of anaerobic phosphorus release during biological phosphorus removal process

    Institute of Scientific and Technical Information of China (English)

    DOU Junfeng; LUO Guyuan; LIU Xiang

    2007-01-01

    Enhanced biological phosphorus removal(EBPR)is a commonly used and sustainable method for phosphorus removal from wastewater.Poly-β-hydroxybutyrate(PHB),polyphosphate,and glycogen are three kinds of intracellular storage polymers in phosphorus accumulation organisms.The variation of these polymers under different conditions has an apparent influence on anaerobic phosphorus release,which is very important for controlling the performance of EBPR.To obtain the mechanism and kinetic character of anaerobic phosphorus release,a series of batch experiments were performed using the excessively aerated sludge from the aerobic unit of the biological phosphorus removal system in this study.The results showed that the volatile suspended solid(vss)had an increasing trend,while the mixed liquid suspended sludge(MLSS)and ashes were reduced during the anaerobic phosphorus release process.The interruption of anaerobic HAc-uptake and phosphorus-release occurs when the glycogen in the phosphorus-accumulating-organisms is exhausted.Under the condition of lower initial HAc-COD,HAc became the limiting factor after some time for anaerobic HAc uptake.Under the condition of higher initial HAc-COD,HAc uptake was stopped because of the depletion of glycogen in the microorganisms.The mean ratio of △ρP/△ρPHB,△ρGLY/△ρPHB,△ρP/△COD,and △ρPHB/△COD was 0.48,0.50,0.44.and 0.92.respectively,which was nearly the same as the theoretical value.The calibrated kinetic parameters of the HAc-uptake and phosphorus-release model were evaluated as Kgly was 0.005,and KCOD was 3 mg/L.An apparently linear correlation was observed between the ratio of △ρP/△COD and pH of the solution,and the equation between them was obtained in this study.

  15. The Structure of a Gene Co-Expression Network Reveals Biological Functions Underlying eQTLs

    Science.gov (United States)

    Villa-Vialaneix, Nathalie; Liaubet, Laurence; Laurent, Thibault; Cherel, Pierre; Gamot, Adrien; SanCristobal, Magali

    2013-01-01

    What are the commonalities between genes, whose expression level is partially controlled by eQTL, especially with regard to biological functions? Moreover, how are these genes related to a phenotype of interest? These issues are particularly difficult to address when the genome annotation is incomplete, as is the case for mammalian species. Moreover, the direct link between gene expression and a phenotype of interest may be weak, and thus difficult to handle. In this framework, the use of a co-expression network has proven useful: it is a robust approach for modeling a complex system of genetic regulations, and to infer knowledge for yet unknown genes. In this article, a case study was conducted with a mammalian species. It showed that the use of a co-expression network based on partial correlation, combined with a relevant clustering of nodes, leads to an enrichment of biological functions of around 83%. Moreover, the use of a spatial statistics approach allowed us to superimpose additional information related to a phenotype; this lead to highlighting specific genes or gene clusters that are related to the network structure and the phenotype. Three main results are worth noting: first, key genes were highlighted as a potential focus for forthcoming biological experiments; second, a set of biological functions, which support a list of genes under partial eQTL control, was set up by an overview of the global structure of the gene expression network; third, pH was found correlated with gene clusters, and then with related biological functions, as a result of a spatial analysis of the network topology. PMID:23577081

  16. Reach tracking reveals dissociable processes underlying cognitive control.

    Science.gov (United States)

    Erb, Christopher D; Moher, Jeff; Sobel, David M; Song, Joo-Hyun

    2016-07-01

    The current study uses reach tracking to investigate how cognitive control is implemented during online performance of the Stroop task (Experiment 1) and the Eriksen flanker task (Experiment 2). We demonstrate that two of the measures afforded by reach tracking, initiation time and reach curvature, capture distinct patterns of effects that have been linked to dissociable processes underlying cognitive control in electrophysiology and functional neuroimaging research. Our results suggest that initiation time reflects a response threshold adjustment process involving the inhibition of motor output, while reach curvature reflects the degree of co-activation between response alternatives registered by a monitoring process over the course of a trial. In addition to shedding new light on fundamental questions concerning how these processes contribute to the cognitive control of behavior, these results present a framework for future research to investigate how these processes function across different tasks, develop across the lifespan, and differ among individuals. PMID:27045465

  17. Biological Control of Water Hyacinth Under Conditions of Maintenance Management: Can Herbicides and Insects Be Integrated?

    Science.gov (United States)

    CENTER; DRAY JR; JUBINSKY; GRODOWITZ

    1999-02-01

    / We hypothesized that repeated herbicidal (maintenance) control of water hyacinth infestations in Florida suppressed biological control agent populations, especially the weevils Neochetina eichhorniae and N. bruchi. We therefore sampled water hyacinth and weevil populations at 54 sites distributed statewide. Half were under maintenance control, half were not treated with herbicides. General site conditions were assessed, demographic data were collected on weevil and plant populations, the reproductive condition of the weevils was determined, and plant nutrient and proximate composition of water hyacinth leaves were analyzed. Water hyacinth infestations under maintenance control were minimal when compared to unmanaged sites. Likewise, on a population basis, all weevil cohorts were much lower due to the paucity of plants. Plants at unmanaged sites, where weevil intensities were much higher, suffered high levels of stress and showed low growth potential. Lower percentages of the female weevils were reproductive at unmanaged sites when compared to managed sites, so densities of reproductives and immatures were similar at both site types. Reproductive status of the weevils improved with increased plant quality. Plant quality, in turn, declined as stresses arising from weevil feeding increased. Plant quality was positively correlated with plant growth potential and flower production. Thus, maintenance control improved plant nutritive quality thereby inducing reproductive vigor of the weevils, but ensuring plant regrowth and the need for future control. This suggests that biological and herbicidal controls should be integrated, using herbicides to maintain water hyacinth infestations below management thresholds but in a manner that conserves biological control agent populations. This approach would lead to improved plant nutritional quality that would, in turn, stimulate reproduction in biological control agent populations. KEY WORDS: Eichhornia crassipes; Neochetina

  18. Trickling Filters. Student Manual. Biological Treatment Process Control.

    Science.gov (United States)

    Richwine, Reynold D.

    The textual material for a unit on trickling filters is presented in this student manual. Topic areas discussed include: (1) trickling filter process components (preliminary treatment, media, underdrain system, distribution system, ventilation, and secondary clarifier); (2) operational modes (standard rate filters, high rate filters, roughing…

  19. Anaerobic Digestion. Student Manual. Biological Treatment Process Control.

    Science.gov (United States)

    Carnegie, John W., Ed.

    This student manual contains the textual material for a four-lesson unit on anaerobic digestion control. Areas addressed include: (1) anaerobic sludge digestion (considering the nature of raw sludge, purposes of anaerobic digestion, the results of digestion, types of equipment, and other topics); (2) digester process control (considering feeding…

  20. State Estimation for a Biological Phosphorus Removal Process using an Asymptotic Observer

    DEFF Research Database (Denmark)

    Larose, Claude Alain; Jørgensen, Sten Bay

    2001-01-01

    This study investigated the use of an asymptotic observer for state estimation in a continuous biological phosphorus removal process. The estimated states are the concentration of heterotrophic, autotrophic, and phosphorus accumulating organisms, polyphosphate, glycogen and PHA. The reaction scheme...

  1. Biological removal of metal ions from aqueous process streams

    International Nuclear Information System (INIS)

    Aqueous waste streams from nuclear fuel processing operations may contain trace quantities of heavy metals such as uranium. Conventional chemical and physical treatment may be ineffective or very expensive when uranium concentrations in the range of 10 to 100 g/m3 must be reduced to 1 g/m3 or less. The ability of some microorganisms to adsorb or complex dissolved heavy metals offers an alternative treatment method. Uranium uptake by Saccharomyces cerevisiae NRRL Y-2574 and a strain of Pseudomonas aeruginosa was examined to identify factors which might affect a process for the removal of uranium from wastewater streams. At uranium concentrations in the range of 10 to 500 g/m3, where the binding capacity of the biomass was not exceeded, temperature, pH, and initial uranium concentration were found to influence the rate of uranium uptake, but not the soluble uranium concentration at equilibrium. 6 figs

  2. Treatment of Dye Effluent by Electrochemical and Biological Processes

    OpenAIRE

    Sirasanaganbla Udya Bhanu; Saravanan Arun Kumar; Anand Kuber Parande; Balakrishnan Ramesh Babu

    2011-01-01

    Textile dye wastewater is well known to contain strong colour, high pH, temperature, Chemical Oxygen Demand (COD) and biodegradable materials. The electrochemical treatment of wastewater is considered as one of the advanced oxidation processes, potentially a powerful method of pollution control, offering high removal efficiencies the removal of colour of methyl red azo dye is a challenge in textile industry. The following methods have been adopted for the treatment of real textile wastewater:...

  3. Kinetics of quasi-isoenergetic transition processes in biological macromolecules

    OpenAIRE

    Petrov, E. G.; Teslenko, V. I.

    2012-01-01

    A master equation describing the evolution of averaged molecular state occupancies in molecular systems where alternation of molecular energy levels is caused by discrete dichotomous and trichotomous stochastic fields, is derived. This study is focused on the kinetics of quasi-isoenergetic transition processes in the presence of moderately high frequency stochastic field. A novel physical mechanism for temperature-independent transitions in flexible molecular systems is proposed. This mechani...

  4. Low cost materials of construction for biological processes: Proceedings

    Energy Technology Data Exchange (ETDEWEB)

    1993-05-13

    The workshop was held, May 1993 in conjunction with the 15th Symposium on Biotechnology for Fuels and Chemicals. The purpose of this workshop was to present information on the biomass to ethanol process in the context of materials selection and through presentation and discussion, identify promising avenues for future research. Six technical presentations were grouped into two sessions: process assessment and technology assessment. In the process assessment session, the group felt that the pretreatment area would require the most extensive materials research due the complex chemical, physical and thermal environment. Discussion centered around the possibility of metals being leached into the process stream and their effect on the fermentation mechanics. Linings were a strong option for pretreatment assuming the economics were favorable. Fermentation was considered an important area for research also, due to the unique complex of compounds and dual phases present. Erosion in feedstock handling equipment was identified as a minor concern. In the technology assessment session, methodologies in corrosion analysis were presented in addition to an overview of current coatings/linings technology. Widely practiced testing strategies, including ASTM methods, as well as novel procedures for micro-analysis of corrosion were discussed. Various coatings and linings, including polymers and ceramics, were introduced. The prevailing recommendations for testing included keeping the testing simple until the problem warranted a more detailed approach and developing standardized testing procedures to ensure the data was reproducible and applicable. The need to evaluate currently available materials such as coatings/linings, carbon/stainless steels, or fiberglass reinforced plastic was emphasized. It was agreed that economic evaluation of each material candidate must be an integral part of any research plan.

  5. Biological processing in oscillatory baffled reactors: operation, advantages and potential.

    Science.gov (United States)

    Abbott, M S R; Harvey, A P; Perez, G Valente; Theodorou, M K

    2013-02-01

    The development of efficient and commercially viable bioprocesses is essential for reducing the need for fossil-derived products. Increasingly, pharmaceuticals, fuel, health products and precursor compounds for plastics are being synthesized using bioprocessing routes as opposed to more traditional chemical technologies. Production vessels or reactors are required for synthesis of crude product before downstream processing for extraction and purification. Reactors are operated either in discrete batches or, preferably, continuously in order to reduce waste, cost and energy. This review describes the oscillatory baffled reactor (OBR), which, generally, has a niche application in performing 'long' processes in plug flow conditions, and so should be suitable for various bioprocesses. We report findings to suggest that OBRs could increase reaction rates for specific bioprocesses owing to low shear, good global mixing and enhanced mass transfer compared with conventional reactors. By maintaining geometrical and dynamic conditions, the technology has been proved to be easily scaled up and operated continuously, allowing laboratory-scale results to be easily transferred to industrial-sized processes. This is the first comprehensive review of bioprocessing using OBRs. The barriers facing industrial adoption of the technology are discussed alongside some suggested strategies to overcome these barriers. OBR technology could prove to be a major aid in the development of commercially viable and sustainable bioprocesses, essential for moving towards a greener future. PMID:24427509

  6. Characteristics of biological aerosols in dairy processing plants.

    Science.gov (United States)

    Kang, Y J; Frank, J F

    1990-03-01

    The viable aerosol in dairy processing plant environments was characterized by using an Andersen six-stage sieve sampler and a Reuter centrifugal sampler. Artificially introduced Serratia marcescens were detected in the air during drain flooding and after rinsing the floor with a pressured water hose, thus illustrating the ability of a specific microorganism to be disseminated from drains and wet surfaces via physical disruption activities often observed in food plants. Once a high concentration of wet viable aerosol was generated, it took 40 or more min to return to the background level in the absence of forced ventilation or other activity. The greatest reduction in viable particles occurred during the first 10 min. Estimated mean aerosol particle sizes were decreased from approximately 4.6 to 3.2 mu with time lapse. The estimated mean aerosol particle sizes from actual dairy processing plant environments ranged from approximately 4.3 to 5.3 mu. In addition, a more heavily contaminated dairy processing environment contained larger aerosol particles. These results indicate that the RCS sampler will often overestimate the true aerosol concentration in highly contaminated air, because mean particle sizes are over 4 mu in diameter. PMID:2187913

  7. A strategy for xenobiotic removal using photocatalytic treatment, microbial degradation or integrated photocatalytic-biological process

    OpenAIRE

    Lapertot, Miléna

    2006-01-01

    According to the limited natural resources and due to the risks of anthropogenic pollution, it appears necessary to react efficiently in order to remove existing contaminations and avoid the creation of new ones. Therefore, the purpose of this thesis is to propose a sustainable strategy for treating problematic pollutants with the most adequate process. First, an overview of the different treatment processes has been given. In particular, biological, photocatalytic and integrated biological-p...

  8. A strategy for xenobiotic removal using photocatalytic treatment, microbial degradation or integrated photocatalytic-biological process

    OpenAIRE

    Lapertot, Miléna; Pulgarin, César

    2007-01-01

    According to the limited natural resources and due to the risks of anthropogenic pollution, it appears necessary to react efficiently in order to remove existing contaminations and avoid the creation of new ones. Therefore, the purpose of this thesis is to propose a sustainable strategy for treating problematic pollutants with the most adequate process. First, an overview of the different treatment processes has been given. In particular, biological, photocatalytic and integrated biological-p...

  9. A process-dissociation examination of the cognitive processes underlying unconscious thought

    OpenAIRE

    Damian, RI; Sherman, JW

    2013-01-01

    Conscious and unconscious thought have been previously found to differentially impact decision-making quality. However, little research has directly measured the processes underlying these modes of thinking. We propose that both thinking modes are characterized by rule-based and intuitive processing. In two experiments, we used the Process Dissociation Procedure to independently measure these cognitive processes. We tested three competing hypotheses: (a) conscious thinking evokes both increas...

  10. BIOCHEMICAL PROCESSES IN CHERNOZEM SOIL UNDER DIFFERENT FERTILIZATION SYSTEMS

    Directory of Open Access Journals (Sweden)

    Ecaterina Emnova

    2012-06-01

    Full Text Available The paper deals with the evaluation of the intensity of certain soil biochemical processes (e.g. soil organic C mineralization at Organic and mixed Mineral+Organic fertilization of typical chernozem in crop rotation dynamics (for 6 years by use of eco-physiological indicators of biological soil quality: microbial biomass carbon, basal soil respiration, as well as, microbial and metabolic quotients. Soil sampling was performed from a long-term field crop experiment, which has been established in 1971 at the Balti steppe (Northern Moldova. The crop types had a more considerable impact on the soil microbial biomass accumulation and community biochemical activity compared to long-term Organic or mixed Mineral + Organic fertilizers amendments. The Org fertilization system doesn’t make it possible to avoid the loss of organic C in arable typical chernozem. The organic fertilizer (cattle manure is able to mitigate the negative consequences of long-term mineral fertilization.

  11. Biologic

    CERN Document Server

    Kauffman, L H

    2002-01-01

    In this paper we explore the boundary between biology and the study of formal systems (logic). In the end, we arrive at a summary formalism, a chapter in "boundary mathematics" where there are not only containers but also extainers ><, entities open to interaction and distinguishing the space that they are not. The boundary algebra of containers and extainers is to biologic what boolean algebra is to classical logic. We show how this formalism encompasses significant parts of the logic of DNA replication, the Dirac formalism for quantum mechanics, formalisms for protein folding and the basic structure of the Temperley Lieb algebra at the foundations of topological invariants of knots and links.

  12. Effect of Process-Oriented Guided-Inquiry Learning on Non-majors Biology Students' Understanding of Biological Classification

    Science.gov (United States)

    Wozniak, Breann M.

    The purpose of this study was to examine the effect of process-oriented guided-inquiry learning (POGIL) on non-majors college biology students' understanding of biological classification. This study addressed an area of science instruction, POGIL in the non-majors college biology laboratory, which has yet to be qualitatively and quantitatively researched. A concurrent triangulation mixed methods approach was used. Students' understanding of biological classification was measured in two areas: scores on pre and posttests (consisting of 11 multiple choice questions), and conceptions of classification as elicited in pre and post interviews and instructor reflections. Participants were Minnesota State University, Mankato students enrolled in BIOL 100 Summer Session. One section was taught with the traditional curriculum (n = 6) and the other section in the POGIL curriculum (n = 10) developed by the researcher. Three students from each section were selected to take part in pre and post interviews. There were no significant differences within each teaching method (p vocabulary terms, physical characteristics, and types of evidence used to classify. Both groups extended their understanding, but only POGIL students could explain how molecular evidence is used in classification. 2) The challenges preventing students from understanding classification were: familiar animal categories and aquatic habitats, unfamiliar organisms, combining and subdividing initial groupings, and the hierarchical nature of classification. The POGIL students were the only group to surpass these challenges after the teaching intervention. This study shows that POGIL is an effective technique at eliciting students' misconceptions, and addressing these misconceptions, leading to an increase in student understanding of biological classification.

  13. Kinetics of quasi-isoenergetic transition processes in biological macromolecules

    International Nuclear Information System (INIS)

    A master equation describing the evolution of averaged molecular state occupancies in molecular systems where alternation of molecular energy levels is caused by discrete dichotomous and trichotomous stochastic fields, is derived. This study is focused on the kinetics of quasi-isoenergetic transition processes in the presence of moderately high frequency stochastic field. A novel physical mechanism for temperature-independent transitions in flexible molecular systems is proposed. This mechanism becomes effective when the conformation transitions between quasi-isoenergetic molecular states take place. At room temperatures, stochastic broadening of molecular energy levels predominates the energy of low-frequency vibrations accompanying the transition. This leads to a cancellation of the temperature dependence in the stochastically averaged rate constants. As examples, physical interpretations of the temperature-independent onset of P2X3 receptor desensitization in neuronal membranes, as well as degradation of PER2 protein in embrionic fibroblasts, are provided.

  14. Kinetics of quasi-isoenergetic transition processes in biological macromolecules

    CERN Document Server

    ,

    2012-01-01

    A master equation describing the evolution of averaged molecular state occupancies in molecular systems where alternation of molecular energy levels is caused by discrete dichotomous and trichotomous stochastic fields, is derived. This study is focused on the kinetics of quasi-isoenergetic transition processes in the presence of moderately high frequency stochastic field. A novel physical mechanism for temperature-independent transitions in flexible molecular systems is proposed. This mechanism becomes effective when the conformation transitions between quasi-isoenergetic molecular states take place. At room temperatures, stochastic broadening of molecular energy levels predominates the energy of low frequency vibrations accompanying the transition. This leads to a cancellation of the temperature dependence in the stochastically averaged rate constants. As examples, physical interpretations of the temperature-independent onset of P2X$_3$ receptor desensitization in neuronal membranes, as well as degradation o...

  15. Hydrogen reactivity toward carbon monoxide under mechanochemical processing

    Energy Technology Data Exchange (ETDEWEB)

    Delogu, Francesco [Dipartimento di Ingegneria Chimica e Materiali, Universita degli Studi di Cagliari, piazza d' Armi, I-09123 Cagliari (Italy); Garroni, Sebastiano; Mulas, Gabriele [Dipartimento di Chimica, Universita degli Studi di Sassari, via Vienna 2, I-07100 Sassari (Italy)

    2010-05-15

    The study focuses on the hydrogenation of carbon monoxide over Co-Fe-based catalysts. The catalytic reactions were performed under both isothermal and mechanical activation conditions and their rates estimated by monitoring the gradual consumption of carbon monoxide. Aimed at carrying out a sound comparison, the rate of mechanically activated processes was referred to individual collisions by normalizing its value to the amount of powder involved in individual collisions and to the time interval of ongoing deformation. This allowed to point out that the amount of carbon monoxide converted per unit of catalyst mass and unit of time under mechanical activation conditions is at least four orders of magnitude larger than the one reacted under thermal activation conditions. This result is tentatively connected with the generation of local excited states at the catalyst surface. (author)

  16. Group-buying inventory policy with demand under Poisson process

    Directory of Open Access Journals (Sweden)

    Tammarat Kleebmek

    2016-02-01

    Full Text Available The group-buying is the modern business of selling in the uncertain market. With an objective to minimize costs for sellers arising from ordering and reordering, we present in this paper the group buying inventory model, with the demand governed by a Poisson process and the product sale distributed as Binomial distribution. The inventory level is under continuous review, while the lead time is fixed. A numerical example is illustrated.

  17. Group-buying inventory policy with demand under Poisson process

    OpenAIRE

    Tammarat Kleebmek; Angkana Boonyued; Wuttichai Srisodapho

    2016-01-01

    The group-buying is the modern business of selling in the uncertain market. With an objective to minimize costs for sellers arising from ordering and reordering, we present in this paper the group buying inventory model, with the demand governed by a Poisson process and the product sale distributed as Binomial distribution. The inventory level is under continuous review, while the lead time is fixed. A numerical example is illustrated.

  18. Optical measurement of temperature in biological cells under infrared laser light exposure (λ=800 nm)

    Science.gov (United States)

    Moreau, David; Lefort, Claire; Leveque, Philippe; O'Connor, Rod P.

    2015-07-01

    Interest in the interaction between laser light and biological samples has gained momentum in recent years, particularly in neurobiology, where there is significant potential to stimulate neurons with infrared laser light. Despite recent reports showing the application of infrared light for neurostimulation, the underlying mechanism is still unknown. The two main hypotheses are based on thermal or electrostatic mechanisms. Here, a novel optical method is presented to make temperature measurements in human neural cells under infrared laser excitation (λ=800nm) using the dye Rhodamine B (RhB). The measurement of temperature is based on the property of RhB, a fluorescent dye whose fluorescence intensity decreases linearly with increases in temperature. We present and detail the setup and measurement procedure that has temporal resolution of few milliseconds, based around a fluorescent live-cell imaging microscope used for cellular microfluorimetry experiments.

  19. Biological Networks Underlying Abiotic Stress Tolerance in Temperate Crops—A Proteomic Perspective

    OpenAIRE

    Klára Kosová; Pavel Vítámvás; Milan Oldřich Urban; Miroslav Klíma; Amitava Roy; Ilja Tom Prášil

    2015-01-01

    Abiotic stress factors, especially low temperatures, drought, and salinity, represent the major constraints limiting agricultural production in temperate climate. Under the conditions of global climate change, the risk of damaging effects of abiotic stresses on crop production increases. Plant stress response represents an active process aimed at an establishment of novel homeostasis under altered environmental conditions. Proteins play a crucial role in plant stress response since they are d...

  20. Carbon removal and nitrification in a rotating biological contractor under different steady-state conditions

    Energy Technology Data Exchange (ETDEWEB)

    Lowhorn, R.W. (Ben Cor Construction Co., Chattanooga, TN); Bustamante, R.B.; Bonner, W.P.

    1980-01-01

    The stage-by-stage degradation of soluble organics was monitored during waste water treatment. The effects of process parameters on nitration of waste water were determined. The rotating biological contactor, applying the fixed film prinicple, was used in this study. Parameters affecting nitrifying bacteria are: dissolved oxygen, temperature, pH, ammonia, nitrite, mean-cell retention time, organic matter, alkalinity, and rotational speed. It was shown that an increase in chemical oxygen demand can occur in the stages following heterotrophic activity in an RBC unit as a result of inadequate buffering capacity in waste water. (DMC)

  1. Aerobic storage under dynamic conditions in activated sludge processes

    DEFF Research Database (Denmark)

    Majone, M.; Dircks, K.

    1999-01-01

    In activated sludge processes, several plant configurations (like plug-flow configuration of the aeration tanks, systems with selectors, contact-stabilization processes or SBR processes) impose a concentration gradient of the carbon sources to the biomass. As a consequence, the biomass grows under...... main reference to its relevance on population dynamics in the activated sludge. Possible conceptual approaches to storage modelling are also presented, including both structured and unstructured modelling. (C) 1999 IAWQ Published by Elsevier Science Ltd. All rights reserved....... mechanisms can also contribute to substrate removal, depending on the microbial composition and the previous "history" of the biomass. In this paper the type and the extent of this dynamic response is discussed by review of experimental studies on pure cultures, mixed cultures and activated sludges and with...

  2. A Practical Approach to Quantitative Processing and Analysis of Small Biological Structures by Fluorescent Imaging

    Science.gov (United States)

    Noller, Crystal M.; Boulina, Maria; McNamara, George; Szeto, Angela; McCabe, Philip M.

    2016-01-01

    Standards in quantitative fluorescent imaging are vaguely recognized and receive insufficient discussion. A common best practice is to acquire images at Nyquist rate, where highest signal frequency is assumed to be the highest obtainable resolution of the imaging system. However, this particular standard is set to insure that all obtainable information is being collected. The objective of the current study was to demonstrate that for quantification purposes, these correctly set acquisition rates can be redundant; instead, linear size of the objects of interest can be used to calculate sufficient information density in the image. We describe optimized image acquisition parameters and unbiased methods for processing and quantification of medium-size cellular structures. Sections of rabbit aortas were immunohistochemically stained to identify and quantify sympathetic varicosities, >2 μm in diameter. Images were processed to reduce background noise and segment objects using free, open-access software. Calculations of the optimal sampling rate for the experiment were based on the size of the objects of interest. The effect of differing sampling rates and processing techniques on object quantification was demonstrated. Oversampling led to a substantial increase in file size, whereas undersampling hindered reliable quantification. Quantification of raw and incorrectly processed images generated false structures, misrepresenting the underlying data. The current study emphasizes the importance of defining image-acquisition parameters based on the structure(s) of interest. The proposed postacquisition processing steps effectively removed background and noise, allowed for reliable quantification, and eliminated user bias. This customizable, reliable method for background subtraction and structure quantification provides a reproducible tool for researchers across biologic disciplines.

  3. Automated Processing of Imaging Data through Multi-tiered Classification of Biological Structures Illustrated Using Caenorhabditis elegans.

    Science.gov (United States)

    Zhan, Mei; Crane, Matthew M; Entchev, Eugeni V; Caballero, Antonio; Fernandes de Abreu, Diana Andrea; Ch'ng, QueeLim; Lu, Hang

    2015-04-01

    Quantitative imaging has become a vital technique in biological discovery and clinical diagnostics; a plethora of tools have recently been developed to enable new and accelerated forms of biological investigation. Increasingly, the capacity for high-throughput experimentation provided by new imaging modalities, contrast techniques, microscopy tools, microfluidics and computer controlled systems shifts the experimental bottleneck from the level of physical manipulation and raw data collection to automated recognition and data processing. Yet, despite their broad importance, image analysis solutions to address these needs have been narrowly tailored. Here, we present a generalizable formulation for autonomous identification of specific biological structures that is applicable for many problems. The process flow architecture we present here utilizes standard image processing techniques and the multi-tiered application of classification models such as support vector machines (SVM). These low-level functions are readily available in a large array of image processing software packages and programming languages. Our framework is thus both easy to implement at the modular level and provides specific high-level architecture to guide the solution of more complicated image-processing problems. We demonstrate the utility of the classification routine by developing two specific classifiers as a toolset for automation and cell identification in the model organism Caenorhabditis elegans. To serve a common need for automated high-resolution imaging and behavior applications in the C. elegans research community, we contribute a ready-to-use classifier for the identification of the head of the animal under bright field imaging. Furthermore, we extend our framework to address the pervasive problem of cell-specific identification under fluorescent imaging, which is critical for biological investigation in multicellular organisms or tissues. Using these examples as a guide, we envision

  4. Automated Processing of Imaging Data through Multi-tiered Classification of Biological Structures Illustrated Using Caenorhabditis elegans.

    Directory of Open Access Journals (Sweden)

    Mei Zhan

    2015-04-01

    Full Text Available Quantitative imaging has become a vital technique in biological discovery and clinical diagnostics; a plethora of tools have recently been developed to enable new and accelerated forms of biological investigation. Increasingly, the capacity for high-throughput experimentation provided by new imaging modalities, contrast techniques, microscopy tools, microfluidics and computer controlled systems shifts the experimental bottleneck from the level of physical manipulation and raw data collection to automated recognition and data processing. Yet, despite their broad importance, image analysis solutions to address these needs have been narrowly tailored. Here, we present a generalizable formulation for autonomous identification of specific biological structures that is applicable for many problems. The process flow architecture we present here utilizes standard image processing techniques and the multi-tiered application of classification models such as support vector machines (SVM. These low-level functions are readily available in a large array of image processing software packages and programming languages. Our framework is thus both easy to implement at the modular level and provides specific high-level architecture to guide the solution of more complicated image-processing problems. We demonstrate the utility of the classification routine by developing two specific classifiers as a toolset for automation and cell identification in the model organism Caenorhabditis elegans. To serve a common need for automated high-resolution imaging and behavior applications in the C. elegans research community, we contribute a ready-to-use classifier for the identification of the head of the animal under bright field imaging. Furthermore, we extend our framework to address the pervasive problem of cell-specific identification under fluorescent imaging, which is critical for biological investigation in multicellular organisms or tissues. Using these examples as a

  5. Biological Denitrification of High Nitrate Processing Wastewaters from Explosives Production Plant.

    Science.gov (United States)

    Cyplik, Paweł; Marecik, Roman; Piotrowska-Cyplik, Agnieszka; Olejnik, Anna; Drożdżyńska, Agnieszka; Chrzanowski, Lukasz

    2012-05-01

    Wastewater samples originating from an explosives production plant (3,000 mg N l(-1) nitrate, 4.8 mg l(-1) nitroglycerin, 1.9 mg l(-1) nitroglycol and 1,200 mg l(-1) chemical oxygen demand) were subjected to biological purification. An attempt to completely remove nitrate and to decrease the chemical oxygen demand was carried out under anaerobic conditions. A soil isolated microbial consortium capable of biodegrading various organic compounds and reduce nitrate to atmospheric nitrogen under anaerobic conditions was used. Complete removal of nitrates with simultaneous elimination of nitroglycerin and ethylene glycol dinitrate (nitroglycol) was achieved as a result of the conducted research. Specific nitrate reduction rate was estimated at 12.3 mg N g(-1) VSS h(-1). Toxicity of wastewater samples during the denitrification process was studied by measuring the activity of dehydrogenases in the activated sludge. Mutagenicity was determined by employing the Ames test. The maximum mutagenic activity did not exceed 0.5. The obtained results suggest that the studied wastewater samples did not exhibit mutagenic properties. PMID:22593607

  6. Mapping the functional properties of soft biological tissues under shear loading

    Science.gov (United States)

    Buckley, Mark Raymond

    The structure and composition of articular cartilage and other load-bearing biological tissues are highly complex and heterogeneous. As a result, their functional mechanical properties exhibit clear spatial variations. Unlocking the structure-function relationship in these materials is critical for devising strategies to restore tissue impaired by injury or disease and can provide a template for successful implant design. Here, we describe a tissue deformation imaging stage (TDIS) allowing for simultaneous force measurement and visualization of microscale deformation in soft biological tissues under controlled shear strain. In combination with a fast confocal microscope, the TDIS is used to test the microscale response of articular cartilage to shear loading. To obtain the location-specific shear modulus of this tissue, we employ a high-resolution technique that involves tracking the deformation of a line photobleached into a fluorescently stained sample loaded in the TDIS. We find that the quasi-static and dynamic shear moduli are lowest roughly 100 mum below the articular surface. Here, articular cartilage is highly nonlinear, stiffening under increased shear strain and becoming more compliant under increased compressive strain. Using a simple thought model, we relate these results to structural features of the collagen network in articular cartilage. Furthermore, we demonstrate that the region of maximum compliance is also the primary site of shear energy dissipation in articular cartilage. Our findings suggest that damage to or surgical removal of the surface of this tissue will increase the joint's susceptibility to shear-induced damage. Finally, similar experiments are performed on intervertebral disc and growth plate, demonstrating the versatility of our in-situ strain mapping techniques.

  7. Removal of reactive blue 19 from wastewaters by physicochemical and biological processes - a review

    International Nuclear Information System (INIS)

    The developments for the removal of reactive blue 19 dye (RB 19) by various physicochemical methods such as sonolysis, photo catalysis, electrochemical, ozonolysis, adsorption, hydrolysis and biological methods like microbial degradation, bio sorption, chemical and biological reductive decolorisation has been presented. It was found that none of the individual physical and chemical technique can be used in wastewater treatment with good economics and high energy efficiency. For example, the application of adsorption method is restricted as adsorbent materials requires frequent regenerations; ozonolysis and photo catalysis processes can efficiently decolorize and degrade the dye but these face operational difficulties are not cost effective. Similarly the performance of biological treatment processes is required to enhance by developing efficient strains of bacteria, fungi. The comparison of physiochemical and biological treatment of RB 19 dye suggested that biological treatment of RB 19 dye is comparatively cost-effective process. However, the integrated approach can be used to decolorize and degrade the dye by combining both physicochemical and biological processes. (author)

  8. Biological factors underlying regularity and chaos in aquatic ecosystems: Simple models of complex dynamics

    Indian Academy of Sciences (India)

    A B Medvinsky; S V Petrovskii; D A Tikhonov; I A Tikhonova; G R Ivanitsky; E Venturino; H Malchow

    2001-03-01

    This work is focused on the processes underlying the dynamics of spatially inhomogeneous plankton communities. We demonstrate that reaction—diffusion mathematical models are an appropriate tool for searching and understanding basic mechanisms of complex spatio-temporal plankton dynamics and fractal properties of planktivorous fish school walks.

  9. Roles of extracellular polymeric substances in enhanced biological phosphorus removal process.

    Science.gov (United States)

    Li, Wen-Wei; Zhang, Hai-Ling; Sheng, Guo-Ping; Yu, Han-Qing

    2015-12-01

    Enhanced biological phosphorus removal (EBPR) process is known to mainly rely on the ability of phosphorus-accumulating organisms to take up, transform and store excess amount of phosphorus (P) inside the cells. However, recent studies have revealed considerable accumulation of P also in the extracellular polymeric substances (EPS) of sludge, implying a non-negligible role of EPS in P removal by EBPR sludge. However, the contribution of EPS to P uptake and the forms of accumulated extracellular P vary substantially in different studies, and the underlying mechanism of P transformation and transportation in EPS remains poorly understood. This review provides a new recognition into the P removal process in EBPR system by incorporating the role of EPS. It overviews on the characteristics of P accumulation in EPS, explores the mechanism of P transformation and transportation in EBPR sludge and EPS, summarizes the main influential factors for the P-accumulation properties of EPS, and discusses the remaining knowledge gaps and needed future efforts that may lead to better understanding and use of such an EPS role for maximizing P recovery from wastewater. PMID:26143588

  10. Operation and control of SBR processes for enhanced biological nutrient removal from wastewater

    OpenAIRE

    Puig Broch, Sebastià

    2008-01-01

    In the last decades, the awareness of environmental issues has increased in society considerably. There is an increasing need to improve the effluent quality of domestic wastewater treatment processes. This thesis describes the application of the Sequencing Batch Reactor (SBR) technology for Biological Nutrient Removal (BNR) from the wastewater. In particular, the work presented evolves from the nitrogen removal to the biological nutrient removal (i.e. nitrogen plus phosphorous removal) with ...

  11. Micropollutant removal from municipal wastewater: from conventional treatments to advanced biological processes

    OpenAIRE

    Margot, Jonas

    2015-01-01

    Many micropollutants present in municipal wastewater, such as pharmaceuticals and pesticides, are poorly removed in conventional wastewater treatment plants (WWTPs), and may generate adverse effects on aquatic life. The objective of this thesis was to study and develop various options to improve micropollutant removal from municipal wastewaters. Various technologies were investigated, from conventional biological treatments to advanced physico-chemical and biological processes such as ozonati...

  12. Degrading organic micropollutants: The next challenge in the evolution of biological wastewater treatment processes

    OpenAIRE

    Naresh eSinghal; Octavio ePerez-Garcia

    2016-01-01

    Global water scarcity is driving the need for identifying new water source. Wastewater could be a potential water resource if appropriate treatment technologies could be developed. One of the barriers to obtaining high quality water from wastewater arises from the presence of organic micropollutants, which are biologically active at trace levels. Removal of these compounds from wastewater by current physico-chemical technologies is prohibitively expensive. While biological treatment processes...

  13. Biological and Physiological Markers of Tactile Sensorial Processing in Healthy Newborns

    OpenAIRE

    Gonçalves, MG; Caldeira-da-Silva, P

    2012-01-01

    The main objective of this review is to provide a descriptive analysis of the biological and physiological markers of tactile sensorial processing in healthy, full-term newborns. Research articles were selected according to the following study design criteria: (a) tactile stimulation for touch sense as an independent variable; (b) having at least one biological or physiological variable as a dependent variable; and (c) the group of participants were characterized as full-term and healthy newb...

  14. Invalidation: a central process underlying maltreatment of women with disabilities.

    Science.gov (United States)

    Hassouneh-Phillips, Dena; McNeff, Elizabeth; Powers, Laurie; Curry, Mary Ann

    2005-01-01

    Recent qualitative studies indicate that maltreatment of women with disabilities by health care providers is a serious quality of care issue. To begin to address this problem, we conducted a secondary analysis of data derived from three qualitative studies of abuse of women with disabilities. Findings identified Invalidation as a central process underlying maltreatment. Invalidation was characterized by health care providers Taking Over care, Discounting, Objectifying, and Hurting women with disabilities during health care encounters. These findings highlight the need to educate health care providers about social and interpersonal aspects of disability and address the problem of Invalidation in health care settings. PMID:16048867

  15. Efficient Option Pricing under Levy Processes, with CVA and FVA

    Directory of Open Access Journals (Sweden)

    Jimmy eLaw

    2015-07-01

    Full Text Available We generalize the Piterbarg (2010 model to include 1 bilateral default risk as in Burgard and Kjaer (2012, and 2 jumps in the dynamics of the underlying asset using general classes of L'evy processes of exponential type. We develop an efficient explicit-implicit scheme for European options and barrier options taking CVA-FVA into account. We highlight the importance of this work in the context of trading, pricing and management a derivative portfolio given the trajectory of regulations.

  16. Heavy-ion radiobiology: new approaches to delineate mechanisms underlying enhanced biological effectiveness.

    Science.gov (United States)

    Blakely, E A; Kronenberg, A

    1998-11-01

    Shortly after the discovery of polonium and radium by Marie Curie and her husband and colleague, Pierre Curie, it was learned that exposure to these alpha-particle emitters produced deleterious biological effects. The mechanisms underlying the increased biological effectiveness of densely ionizing radiations, including alpha particles, neutrons and highly energetic heavy charged particles, remain an active area of investigation. In this paper, we review recent advances in several areas of the radiobiology of these densely ionizing radiations, also known as heavy ions. Advances are described in the areas of DNA damage and repair, chromosome aberrations, mutagenesis, neoplastic transformation in vitro, genomic instability, normal tissue radiobiology and carcinogenesis in vivo. We focus on technical innovations, including novel applications of pulsed-field gel electrophoresis, fluorescence in situ hybridization (FISH), linkage analysis, and studies of gene expression and protein expression. We also highlight the use of new cellular and animal systems, including those with defined DNA repair deficiencies, as well as epithelial cell model systems to assess neoplastic transformation both in vitro and in vivo. The studies reviewed herein have had a substantial impact on our understanding of the genotoxic effects of heavy ions as well as their distinct effects on tissue homeostasis. The use of these radiations in cancer therapy is also discussed. The use of both heavy-ion and proton therapy is on the upswing in several centers around the world, due to their unique energy deposition characteristics that enhance the therapeutic effect and help reduce damage to normal tissue. PMID:9806616

  17. Heavy-ion radiobiology: new approaches to delineate mechanisms underlying enhanced biological effectiveness

    Science.gov (United States)

    Blakely, E. A.; Kronenberg, A.; Chatterjee, A. (Principal Investigator)

    1998-01-01

    Shortly after the discovery of polonium and radium by Marie Curie and her husband and colleague, Pierre Curie, it was learned that exposure to these alpha-particle emitters produced deleterious biological effects. The mechanisms underlying the increased biological effectiveness of densely ionizing radiations, including alpha particles, neutrons and highly energetic heavy charged particles, remain an active area of investigation. In this paper, we review recent advances in several areas of the radiobiology of these densely ionizing radiations, also known as heavy ions. Advances are described in the areas of DNA damage and repair, chromosome aberrations, mutagenesis, neoplastic transformation in vitro, genomic instability, normal tissue radiobiology and carcinogenesis in vivo. We focus on technical innovations, including novel applications of pulsed-field gel electrophoresis, fluorescence in situ hybridization (FISH), linkage analysis, and studies of gene expression and protein expression. We also highlight the use of new cellular and animal systems, including those with defined DNA repair deficiencies, as well as epithelial cell model systems to assess neoplastic transformation both in vitro and in vivo. The studies reviewed herein have had a substantial impact on our understanding of the genotoxic effects of heavy ions as well as their distinct effects on tissue homeostasis. The use of these radiations in cancer therapy is also discussed. The use of both heavy-ion and proton therapy is on the upswing in several centers around the world, due to their unique energy deposition characteristics that enhance the therapeutic effect and help reduce damage to normal tissue.

  18. Decision-Making Under Risk: Integrating Perspectives From Biology, Economics, and Psychology.

    Science.gov (United States)

    Mishra, Sandeep

    2014-04-25

    Decision-making under risk has been variably characterized and examined in many different disciplines. However, interdisciplinary integration has not been forthcoming. Classic theories of decision-making have not been amply revised in light of greater empirical data on actual patterns of decision-making behavior. Furthermore, the meta-theoretical framework of evolution by natural selection has been largely ignored in theories of decision-making under risk in the human behavioral sciences. In this review, I critically examine four of the most influential theories of decision-making from economics, psychology, and biology: expected utility theory, prospect theory, risk-sensitivity theory, and heuristic approaches. I focus especially on risk-sensitivity theory, which offers a framework for understanding decision-making under risk that explicitly involves evolutionary considerations. I also review robust empirical evidence for individual differences and environmental/situational factors that predict actual risky decision-making that any general theory must account for. Finally, I offer steps toward integrating various theoretical perspectives and empirical findings on risky decision-making. PMID:24769798

  19. Sustainable Process Design under uncertainty analysis: targeting environmental indicators

    DEFF Research Database (Denmark)

    L. Gargalo, Carina; Gani, Rafiqul

    2015-01-01

    This study focuses on uncertainty analysis of environmental indicators used to support sustainable process design efforts. To this end, the Life Cycle Assessment methodology is extended with a comprehensive uncertainty analysis to propagate the uncertainties in input LCA data to the environmental...... extended LCA procedure is flexible and generic and can handle various sources of uncertainties in environmental impact analysis. This is expected to contribute to more reliable calculation of impact categories and robust sustainable process design....... from algae biomass is used as a case study. The results indicate there are considerable uncertainties in the calculated environmental indicators as revealed by CDFs. The underlying sources of these uncertainties are indeed the significant variation in the databases used for the LCA analysis. The...

  20. ER Protein Processing Under Oxidative Stress: Implications and Prevention.

    Science.gov (United States)

    Khalil, Mahmoud F; Valenzuela, Carlos; Sisniega, Daniella; Skouta, Rachid; Narayan, Mahesh

    2016-06-01

    Elevated levels of mitochondrial nitrosative stress have been associated with the pathogenesis of both Parkinson's and Alzheimer's diseases. The mechanism involves catalytic poisoning of the endoplasmic reticulum (ER)-resident oxidoreductase chaperone, protein disulfide isomerase (PDI), and the subsequent accumulation of ER-processed substrate proteins. Using a model system to mimic mitochondrial oxidative and nitrosative stress, we demonstrate a PDI-independent mechanism whereby reactive oxygen species (ROS) compromise regeneration rates of disulfide bond-containing ER-processed proteins. Under ROS-duress, the secretion-destined traffic adopts disulfide-exposed structures making the protein flux retrotranslocation biased. We also demonstrate that ROS-compromised protein maturation rates can be rescued by the polyphenol ellagic acid (EA). Our results are significant in that they reveal an additional mechanism which could promote neurodegenerative disorders. Furthermore, our data reveal that EA possesses therapeutic potential as a lead prophylactic agent against oxidative/nitrosative stress-related neurodegenerative diseases. PMID:26983927

  1. Biological control of white mold by Trichoderma harzianum in common bean under field conditions

    Directory of Open Access Journals (Sweden)

    Daniel Diego Costa Carvalho

    2015-12-01

    Full Text Available Abstract: The objective of this work was to evaluate Trichoderma harzianum isolates for biological control of white mold in common bean (Phaseolus vulgaris. Five isolates were evaluated for biocontrol of white mold in 'Perola' common bean under field conditions, in the 2009 and 2010 crop seasons. A commercial isolate (1306 and a control treatment were included. Foliar applications at 2x109 conidia mL-1 were performed at 42 and 52 days after sowing (DAS, in 2009, and at 52 DAS in 2010. The CEN287, CEN316, and 1306 isolates decreased the number of Sclerotinia sclerotiorum apothecia per square meter in comparison to the control, in both crop seasons. CEN287, CEN316, and 1306 decreased white mold severity during the experimental period, when compared to the control.

  2. Integration of advanced oxidation technologies and biological processes: recent developments, trends, and advances.

    Science.gov (United States)

    Tabrizi, Gelareh Bankian; Mehrvar, Mehrab

    2004-01-01

    The greatest challenge of today's wastewater treatment technology is to optimize the use of biological and chemical wastewater treatment processes. The choice of the process and/or integration of the processes depend strongly on the wastewater characteristics, concentrations, and the desired efficiencies. It has been observed by many investigators that the coupling of a bioreactor and advanced oxidation processes (AOPs) could reduce the final concentrations of the effluent to the desired values. However, optimizing the total cost of the treatment is a challenge, as AOPs are much more expensive than biological processes alone. Therefore, an appropriate design should not only consider the ability of this coupling to reduce the concentration of organic pollutants, but also try to obtain the desired results in a cost effective process. To consider the total cost of the treatment, the residence time in biological and photochemical reactors, the kinetic rates, and the capital and operating costs of the reactors play significant roles. In this study, recent developments and trends (1996-2003) on the integration of photochemical and biological processes for the degradation of problematic pollutants in wastewater have been reviewed. The conditions to get the optimum results from this integration have also been considered. In most of the studies, it has been shown that the integrated processes were more efficient than individual processes. However, slight changes in the configuration of the reactors, temperature, pH, treatment time, concentration of the oxidants, and microorganism's colonies could lead to a great deviation in results. It has also been demonstrated that the treatment cost in both reactors is a function of time, which changes by the flow rate. The minimum cost in the coupling of the processes cannot be achieved unless considering the best treatment time in chemical and biological reactors individually. PMID:15533022

  3. Mineralization of 2-chlorophenol by sequential electrochemical reductive dechlorination and biological processes.

    Science.gov (United States)

    Arellano-González, Miguel Ángel; González, Ignacio; Texier, Anne-Claire

    2016-08-15

    In this work, a novel approach was applied to obtain the mineralization of 2-chlorophenol (2-CP) in an electrochemical-biological combined system where an electrocatalytic dehydrogenation process (reductive dechlorination) was coupled to a biological denitrification process. Reductive dechlorination of 2-CP was conducted in an ECCOCEL-type reactor on a Pd-Ni/Ti electrode at a potential of -0.40V vs Ag/AgCl(s)/KCl(sat), achieving 100 percent transformation of 2-CP into phenol. The electrochemically pretreated effluent was fed to a rotating cylinder denitrifying bioreactor where the totality of phenol was mineralized by denitrification, obtaining CO2 and N2 as the end products. The total time required for 2-CP mineralization in the combined electrochemical-biological process was 7.5h. This value is close to those previously reported for electrochemical and advanced oxidation processes but in this case, an efficient process was obtained without accumulation of by-products or generation of excessive energy costs due to the selective electrochemical pretreatment. This study showed that the use of electrochemical reductive pretreatment combined with biological processes could be a promising technology for the removal of recalcitrant molecules, such as chlorophenols, from wastewaters by more efficient, rapid, and environmentally friendly processes. PMID:27131458

  4. Modeling soil moisture processes and recharge under a melting snowpack

    Science.gov (United States)

    Flint, A.L.; Flint, L.E.; Dettinger, M.D.

    2008-01-01

    Recharge into granitic bedrock under a melting snowpack is being investigated as part of a study designed to understand hydrologic processes involving snow at Yosemite National Park in the Sierra Nevada Mountains of California. Snowpack measurements, accompanied by water content and matric potential measurements of the soil under the snowpack, allowed for estimates of infiltration into the soil during snowmelt and percolation into the bedrock. During portions of the snowmelt period, infiltration rates into the soil exceeded the permeability of the bedrock and caused ponding to be sustained at the soil-bedrock interface. During a 5-d period with little measured snowmelt, drainage of the ponded water into the underlying fractured granitic bedrock was estimated to be 1.6 cm d?1, which is used as an estimate of bedrock permeability. The numerical simulator TOUGH2 was used to reproduce the field data and evaluate the potential for vertical flow into the fractured bedrock or lateral flow at the bedrock-soil interface. During most of the snowmelt season, the snowmelt rates were near or below the bedrock permeability. The field data and model results support the notion that snowmelt on the shallow soil overlying low permeability bedrock becomes direct infiltration unless the snowmelt rate greatly exceeds the bedrock permeability. Late in the season, melt rates are double that of the bedrock permeability (although only for a few days) and may tend to move laterally at the soil-bedrock interface downgradient and contribute directly to streamflow. ?? Soil Science Society of America.

  5. Lubricant for hot processing of metals under pressure

    Energy Technology Data Exchange (ETDEWEB)

    Forostyan, Yu.N.; Fokin, G.T.; Forostyan, Ye.I.; Kvasnitskiy, A.A.; Marchenko, V.N.; Shchiglyk, N.M.; Yashkin, E.G.

    1982-01-01

    Lubricant formula for hot processing of metals under pressure (%): hydrolyzed lignin 5-5/sup 0/, CaO 1-10, CaSO/sub 4/ 0.1-2, trisodiumphosphate 5-15, NaOH 1.5-5, polymerized cod liver oil 10-20, antiseptic 0.01-1, water the rest. In comparison with the prototype, this formulation assures reduced pressure of the instrument on the metal and increases wear-resistance. The formula was tested under the following conditions: mill with steel rollers 200 mm in diameter. Steel samples (brand SP 28) were rolled under 1050/sup 0/ at a rate of 0.5 m/sec, maintaining a constant gap between the rollers. For the test product and the analog, data was as follows: thickness of sample prior to rolling (mm) 4.72-4.73 and 4.71; thickness of sample after rolling (mm) 2.71-2.73 and 2.74; sample compression (%) 42.3-42.6 and 41.9; average rolling force (t) 24.2-25.4 and 26.2; reduction of force (%) 26.3-29.8 and 24.0.

  6. Landauer in the Age of Synthetic Biology: Energy Consumption and Information Processing in Biochemical Networks

    Science.gov (United States)

    Mehta, Pankaj; Lang, Alex H.; Schwab, David J.

    2016-03-01

    A central goal of synthetic biology is to design sophisticated synthetic cellular circuits that can perform complex computations and information processing tasks in response to specific inputs. The tremendous advances in our ability to understand and manipulate cellular information processing networks raises several fundamental physics questions: How do the molecular components of cellular circuits exploit energy consumption to improve information processing? Can one utilize ideas from thermodynamics to improve the design of synthetic cellular circuits and modules? Here, we summarize recent theoretical work addressing these questions. Energy consumption in cellular circuits serves five basic purposes: (1) increasing specificity, (2) manipulating dynamics, (3) reducing variability, (4) amplifying signal, and (5) erasing memory. We demonstrate these ideas using several simple examples and discuss the implications of these theoretical ideas for the emerging field of synthetic biology. We conclude by discussing how it may be possible to overcome these limitations using "post-translational" synthetic biology that exploits reversible protein modification.

  7. Quantum chemical methods for the investigation of photoinitiated processes in biological systems: theory and applications.

    Science.gov (United States)

    Dreuw, Andreas

    2006-11-13

    With the advent of modern computers and advances in the development of efficient quantum chemical computer codes, the meaningful computation of large molecular systems at a quantum mechanical level became feasible. Recent experimental effort to understand photoinitiated processes in biological systems, for instance photosynthesis or vision, at a molecular level also triggered theoretical investigations in this field. In this Minireview, standard quantum chemical methods are presented that are applicable and recently used for the calculation of excited states of photoinitiated processes in biological molecular systems. These methods comprise configuration interaction singles, the complete active space self-consistent field method, and time-dependent density functional theory and its variants. Semiempirical approaches are also covered. Their basic theoretical concepts and mathematical equations are briefly outlined, and their properties and limitations are discussed. Recent successful applications of the methods to photoinitiated processes in biological systems are described and theoretical tools for the analysis of excited states are presented. PMID:17009357

  8. Processes regulating progressive nitrogen limitation under elevated carbon dioxide: a meta-analysis

    Science.gov (United States)

    Liang, Junyi; Qi, Xuan; Souza, Lara; Luo, Yiqi

    2016-05-01

    The nitrogen (N) cycle has the potential to regulate climate change through its influence on carbon (C) sequestration. Although extensive research has explored whether or not progressive N limitation (PNL) occurs under CO2 enrichment, a comprehensive assessment of the processes that regulate PNL is still lacking. Here, we quantitatively synthesized the responses of all major processes and pools in the terrestrial N cycle with meta-analysis of CO2 experimental data available in the literature. The results showed that CO2 enrichment significantly increased N sequestration in the plant and litter pools but not in the soil pool, partially supporting one of the basic assumptions in the PNL hypothesis that elevated CO2 results in more N sequestered in organic pools. However, CO2 enrichment significantly increased the N influx via biological N fixation and the loss via N2O emission, but decreased the N efflux via leaching. In addition, no general diminished CO2 fertilization effect on plant growth was observed over time up to the longest experiment of 13 years. Overall, our analyses suggest that the extra N supply by the increased biological N fixation and decreased leaching may potentially alleviate PNL under elevated CO2 conditions in spite of the increases in plant N sequestration and N2O emission. Moreover, our syntheses indicate that CO2 enrichment increases soil ammonium (NH4+) to nitrate (NO3-) ratio. The changed NH4+/NO3- ratio and subsequent biological processes may result in changes in soil microenvironments, above-belowground community structures and associated interactions, which could potentially affect the terrestrial biogeochemical cycles. In addition, our data synthesis suggests that more long-term studies, especially in regions other than temperate ones, are needed for comprehensive assessments of the PNL hypothesis.

  9. An ontology-based approach to systems biology literature retrieval and processing

    OpenAIRE

    Lourenço, Anália; Simões, Alberto; Almeida, J. J.; Rocha, Miguel; Rocha, I; Ferreira, E. C.

    2007-01-01

    This paper details the SysBio Explorer, a Systems Biology Literature Retrieval and Processing Framework, whose aim relies on the automatic inference of regulatory and metabolic networks based on biomedical literature. The SysBio Explorer does not focus on any organism or problem in particular and encompasses a number of processing and analysis techniques. It works over full-text documents, applying Natural Language Processing techniques and using biomedical dictionaries and ontologies togethe...

  10. Design and application of calorimeters for monitoring biological processes in stirred tank bioreactors

    OpenAIRE

    Regestein, Lars

    2013-01-01

    Developing and improving online monitoring techniques for processes is always a matter of interest for industrial and research applications. Independent of kind and complexity of the reaction, measuring the heat generation (calorimetry) is a universal tool for process monitoring. Therefore, two new calorimetric measurement techniques (chip calorimeter and reactor calorimeter) for process monitoring in stirred tank reactors were developed, validated and applied to several biological systems. ...

  11. Nonequilibrium thermodynamics transport and rate processes in physical, chemical and biological systems

    CERN Document Server

    Demirel, Yasar

    2014-01-01

    Natural phenomena consist of simultaneously occurring transport processes and chemical reactions. These processes may interact with each other and may lead to self-organized structures, fluctuations, instabilities, and evolutionary systems. Nonequilibrium Thermodynamics, 3rd edition emphasizes the unifying role of thermodynamics in analyzing the natural phenomena. This third edition updates and expands on the first and second editions by focusing on the general balance equations for coupled processes of physical, chemical, and biological systems. The new edition contains a new chapte

  12. N deposition as a threat to the World's protected areas under the Convention on Biological Diversity

    International Nuclear Information System (INIS)

    This paper combines the world's protected areas (PAs) under the Convention on Biological Diversity (CBD), common classification systems of ecosystem conservation status, and current knowledge on ecosystem responses to nitrogen (N) deposition to determine areas most at risk. The results show that 40% (approx. 11% of total area) of PAs currently receive >10 kg N/ha/yr with projections for 2030 indicating that this situation is not expected to change. Furthermore, 950 PAs are projected to receive >30 kg N/ha/yr by 2030 (approx. twice the 2000 number), of which 62 (approx. 11,300 km2) are also Biodiversity Hotspots and G200 ecoregions; with forest and grassland ecosystems in Asia particularly at risk. Many of these sites are known to be sensitive to N deposition effects, both in terms of biodiversity changes and ecosystem services they provide. Urgent assessment of high risk areas identified in this study is recommended to inform the conservation efforts of the CBD. - Highlights: → Significant areas of the Protected Areas Programme under the CBD will likely be under threat of high N deposition levels by the year 2030.→ Approx. 950 PAs are projected to receive N deposition levels of more than 30 kg N/ha/yr by 2030.→ 62 of these sites are also Biodiversity Hotspots and G200 ecoregions, where forest and grassland ecosystems in Asia will be particularly at risk.→ Many of these sites are known to be sensitive to N deposition effects, both in terms of biodiversity changes and ecosystem services they provide → Urgent assessment of high risk areas identified in this study is recommended to inform the conservation efforts of the CBD. - Significant areas of the UNEP Protected Areas Programme under the CBD receive high N deposition rates that are likely to increase in the future, especially in Asia, and may pose a significant threat to biodiversity.

  13. Interconnection of reactive oxygen species chemistry across the interfaces of atmospheric, environmental, and biological processes.

    Science.gov (United States)

    Anglada, Josep M; Martins-Costa, Marilia; Francisco, Joseph S; Ruiz-López, Manuel F

    2015-03-17

    Oxidation reactions are ubiquitous and play key roles in the chemistry of the atmosphere, in water treatment processes, and in aerobic organisms. Ozone (O3), hydrogen peroxide (H2O2), hydrogen polyoxides (H2Ox, x > 2), associated hydroxyl and hydroperoxyl radicals (HOx = OH and HO2), and superoxide and ozonide anions (O2(-) and O3(-), respectively) are the primary oxidants in these systems. They are commonly classified as reactive oxygen species (ROS). Atmospheric chemistry is driven by a complex system of chain reactions of species, including nitrogen oxides, hydroxyl and hydroperoxide radicals, alkoxy and peroxy radicals, and ozone. HOx radicals contribute to keeping air clean, but in polluted areas, the ozone concentration increases and creates a negative impact on plants and animals. Indeed, ozone concentration is used to assess air quality worldwide. Clouds have a direct effect on the chemical composition of the atmosphere. On one hand, cloud droplets absorb many trace atmospheric gases, which can be scavenged by rain and fog. On the other hand, ionic species can form in this medium, which makes the chemistry of the atmosphere richer and more complex. Furthermore, recent studies have suggested that air-cloud interfaces might have a significant impact on the overall chemistry of the troposphere. Despite the large differences in molecular composition, concentration, and thermodynamic conditions among atmospheric, environmental, and biological systems, the underlying chemistry involving ROS has many similarities. In this Account, we examine ROS and discuss the chemical characteristics common to all of these systems. In water treatment, ROS are key components of an important subset of advanced oxidation processes. Ozonation, peroxone chemistry, and Fenton reactions play important roles in generating sufficient amounts of hydroxyl radicals to purify wastewater. Biochemical processes within living organisms also involve ROS. These species can come from pollutants in

  14. In Vivo Bioluminescent Imaging (BLI: Noninvasive Visualization and Interrogation of Biological Processes in Living Animals

    Directory of Open Access Journals (Sweden)

    Steven Ripp

    2010-12-01

    Full Text Available In vivo bioluminescent imaging (BLI is increasingly being utilized as a method for modern biological research. This process, which involves the noninvasive interrogation of living animals using light emitted from luciferase-expressing bioreporter cells, has been applied to study a wide range of biomolecular functions such as gene function, drug discovery and development, cellular trafficking, protein-protein interactions, and especially tumorigenesis, cancer treatment, and disease progression. This article will review the various bioreporter/biosensor integrations of BLI and discuss how BLI is being applied towards a new visual understanding of biological processes within the living organism.

  15. Evaluation of the processing of dry biological ferment for gamma radiation

    International Nuclear Information System (INIS)

    The developed work had with objectives to demonstrate if it had alteration in the growth of UFC in plate and in the viability of yeasts and total bacteria when dry biological ferment was dealt with by different doses to gamma radiation and under different times storage, to determine the D10 dose for total bacteria and yeasts in this product and to analyzed the processing of this product it promoted some benefit without causing unfeasibility of exactly. The different samples of dry biological ferment had been irradiated at IPEN in a Gammacell - 220 source at 0.5; 1; 2 and 3 kGy doses (dose rate of 3.51 kGy/h). This procedure referring samples to each dose of radiation had been after destined to the microbiological analysis and the test of viability while excessively the samples had been stored the ambient temperature (23 degree C). The increase of the dose of radiation caused a reduction in the counting of yeasts growth, of total bacteria growth and also in the frequency of viable yeast cells, demonstrated by FDA-EB fluorescent method. Beyond of radiation the storage time also it influenced in counting reduction of total bacteria and reduction of frequency of viable cells. According with the analysis of simple linear regression, the dose of radiation necessary to eliminate 90% of the yeast population was between 1.10 and 2.23 kGy and for the bacterial population varied between 2.31 and 2.95 kGy. These results demonstrated clearly the negative points of the application of ionizing radiation in dry biological ferment; therefore the interval of D10 found for total bacteria is superior to found for yeasts. Being thus, the use of this resource for the improvement of the product quality becomes impracticable, since to reduce significantly the bacterial population necessarily we have that to diminish the population of yeasts. With yeasts reduction of we will go significantly to modify the quality and the viability of product. (author)

  16. An efficient process for wastewater treatment to mitigate free nitrous acid generation and its inhibition on biological phosphorus removal

    Science.gov (United States)

    Zhao, Jianwei; Wang, Dongbo; Li, Xiaoming; Yang, Qi; Chen, Hongbo; Zhong, Yu; An, Hongxue; Zeng, Guangming

    2015-02-01

    Free nitrous acid (FNA), which is the protonated form of nitrite and inevitably produced during biological nitrogen removal, has been demonstrated to strongly inhibit the activity of polyphosphate accumulating organisms (PAOs). Herein we reported an efficient process for wastewater treatment, i.e., the oxic/anoxic/oxic/extended-idle process to mitigate the generation of FNA and its inhibition on PAOs. The results showed that this new process enriched more PAOs which thereby achieved higher phosphorus removal efficiency than the conventional four-step (i.e., anaerobic/oxic/anoxic/oxic) biological nutrient removal process (41 +/- 7% versus 30 +/- 5% in abundance of PAOs and 97 +/- 0.73% versus 82 +/- 1.2% in efficiency of phosphorus removal). It was found that this new process increased pH value but decreased nitrite accumulation, resulting in the decreased FNA generation. Further experiments showed that the new process could alleviate the inhibition of FNA on the metabolisms of PAOs even under the same FNA concentration.

  17. Integrated physicochemical and biological treatment process for fluoride and phosphorus removal from fertilizer plant wastewater.

    Science.gov (United States)

    Gouider, Mbarka; Mlaik, Najwa; Feki, Mongi; Sayadi, Sami

    2011-08-01

    The phosphate fertilizer industry produces highly hazardous and acidic wastewaters. This study was undertaken to develop an integrated approach for the treatment of wastewaters from the phosphate industry. Effluent samples were collected from a local phosphate fertilizer producer and were characterized by their high fluoride and phosphate content. First, the samples were pretreated by precipitation of phosphate and fluoride ions using hydrated lime. The resulting low- fluoride and phosphorus effluent was then treated with the enhanced biological phosphorus removal (EBPR) process to monitor the simultaneous removal of carbon, nitrogen, and phosphorus. Phosphorus removal included a two-stage anaerobic/aerobic system operating under continuous flow. Pretreated wastewater was added to the activated sludge and operated for 160 days in the reactor. The operating strategy included increasing the organic loading rate (OLR) from 0.3 to 1.2 g chemical oxygen demand (COD)/L.d. The stable and high removal rates of COD, NH4(+)-N, and PO4(3-)-P were then recorded. The mean concentrations of the influent were approximately 3600 mg COD/L, 60 mg N/L, and 14 mg P/L, which corresponded to removal efficiencies of approximately 98%, 86%, and 92%, respectively. PMID:21905410

  18. NifH: Structural and Mechanistic Similarities with Proteins Involved in Diverse Biological Processes

    Directory of Open Access Journals (Sweden)

    Surobhi Lahiri

    2008-01-01

    Full Text Available The NifH protein is a subunit of the nitrogenase enzyme that catalyzes the reduction of atmospheric nitrogen to ammonia. This protein contains highly conserved regions including the nucleotide binding sites, metal center ligands and the Switch I and Switch II domains. A number of proteins have structural and mechanistic similarities as well as evolutionary relationships with the NifH protein, notable among them being: light independent protochlorophyllide (Pchlide reductase (ChlL/FrxC or bChL, arsenite pump ATPase (ArsA, 2-hydroxyglutaryl dehydratase Component A (CompA involved in glutamate degradation and MinD that functions in spatial regulation of cell division. Although involved in very diverse biological processes, these proteins share an underlying common structural framework. This review mainly focuses on the structural similarities of these proteins with the NifH protein and discusses recent reports of complementation studies involving NifH and few of the proteins mentioned.

  19. Functional assessment of ubiquitin-depended processes under microgravity conditions

    Science.gov (United States)

    Zhabereva, Anastasia; Shenkman, Boris S.; Gainullin, Murat; Gurev, Eugeny; Kondratieva, Ekaterina; Kopylov, Arthur

    Ubiquitylation, a widespread and important posttranslational modification of eukaryotic proteins, controls a multitude of critical cellular processes, both in normal and pathological conditions. The present work aims to study involvement of ubiquitin-dependent regulation in adaptive response to the external stimuli. Experiments were carried out on C57BL/6 mice. The microgravity state under conditions of real spaceflight on the biosatellite “BION-M1” was used as a model of stress impact. Additionally, number of control series including the vivarium control and experiments in Ground-based analog were also studied. The aggregate of endogenously ubiquitylated proteins was selected as specific feature of ubiquitin-dependent processes. Dynamic changes of modification pattern were characterized in liver tissue by combination of some methods, particularly by specific isolation of explicit protein pool, followed by immunodetection and/or mass spectrometry-based identification. The main approach includes specific extraction of proteins, modified by multiubiquitin chains of different length and topology. For this purpose two techniques were applied: 1) immunoprecipitation with antibodies against ubiquitin and/or multiubiquitin chains; 2) pull-down using synthetic protein construct termed Tandem Ubiquitin Binding Entities (TUBE, LifeSensors). TUBE represents fusion protein, composed of well characterized ubiquitin-binding domains, and thereby allows specific high-affinity binding and extraction of ubiquitylated proteins. Resulting protein fractions were analyzed by immunoblotting with antibodies against different types of multiubiquitin chains. Using this method we mapped endogenously modified proteins involved in two different types of ubiquitin-dependent processes, namely catabolic and non-catabolic ubiquitylation, in liver tissues, obtained from both control as well as experimental groups of animals, mentioned above. Then, isolated fractions of ubiquitylated proteins

  20. Tracer testing of processes under variable flow and volume

    International Nuclear Information System (INIS)

    Continuous flow vessel system of pilot scale was constructed and provided computer control for programmed variation of flow rate and volume of liquid. Radioisotope and chemical tracers pulses were used for determination of residence time distributions (RTDs). It has been shown earlier that the RTDs of such vessels are invariable under variations of flow or volume of flow, if they are presented as a functions of an appropriate, integrated variable, and if the process flow pattern is not affected by the stated variations. The experimental responses of the individual vessels tested were therefore converted to RTD functions of such variable. In turned out that they converged close to each other within a wide range of steady states and dynamic variations of flow and volume. This is considered to indicate the expediency of the integrated variable used and invariance of the vessel flow pattern within the same range. Additional tests with continuous, randomly variable tracer feed support these conclusions. (author)

  1. Nutrient Recovery of Plant Leachates Under Thermal, Biological, and Photocatalytic Pretreatments

    Science.gov (United States)

    Wong, Les

    2015-01-01

    Nutrient recovery has always been a problem for long distance and long-term space missions. To allow humans to man these missions, a steady source of oxygen, water, and food are necessary for survival beyond Earth's atmosphere. Plants are currently an area of interest since they are capable of providing all three resources for life sustainability. We are currently interested in nutrient recovery for future plant growth and simple aqueous leachate extractions can recover some of the nutrients. However, leaching plants also removes water-soluble organic plant wastes, which inhibits plant growth if not separated properly. To combat the issues with waste and maximize nutrient recovery, we are attempting to pre-treat the plant matter using biological, thermal, and photocatalytic methods before subjecting the solution with variable-strength acid digestion. For the biological method, the inoculums: mixed heterotrophic/nitrifying bioreactor effluent and Trichoderma vessei are used in an attempt to liberate more nutrients from the plant matter. For the thermal method, plants are subjected to varying temperatures at different retention times to determine nutrient recovery. Lastly, the photocatalytic method utilizes TiO (sub 2)'s oxidizing abilities under specific pHs and retention times to reduce organic wastes and improve nutrient gains. A final acid digestion serves to liberate nutrients even further in order to maximize recovery. So far, we have tested ideal acid digestion variables for practicality and performance in our experiments. We found that a low retention time of 10 minutes and a high acid concentration of 0.1 and 1 mole HCl were the most effective at nutrient recovery. For space travel purposes, 0.1 mole currently looks like a viable acid digestion to use since it is relatively effective and sustainable from a mass and energy balance if acid recovery can be performed on waste brines. Biological pretreatments do not look to be too effective and the thermal and

  2. Degrading organic micropollutants: The next challenge in the evolution of biological wastewater treatment processes

    Directory of Open Access Journals (Sweden)

    Naresh eSinghal

    2016-05-01

    Full Text Available Global water scarcity is driving the need for identifying new water source. Wastewater could be a potential water resource if appropriate treatment technologies could be developed. One of the barriers to obtaining high quality water from wastewater arises from the presence of organic micropollutants, which are biologically active at trace levels. Removal of these compounds from wastewater by current physico-chemical technologies is prohibitively expensive. While biological treatment processes are comparatively cheap, current systems are not capable of degrading the wide range of organic micropollutants present in wastewater. As current wastewater treatment processes were developed for treating conventional pollutants present at mg/L levels, degrading the ng/L levels of micropollutants will require a different approach to system design and operation. In this paper we discuss strategies that could be employed to develop biological wastewater treatment systems capable of degrading organic micropollutants.

  3. Whole process reclamation and utilization of wastes produced in the biological fermentation industry

    Institute of Scientific and Technical Information of China (English)

    YAN Ling-jun; LI Da-peng; MA Fang; Chein-chi Chang; XU Shan-wen; QIU Shan

    2008-01-01

    Wastes yielded in the vintage process and the biological fermentation of itaconic acid and sodium gluconate of a winery in Shandong,such as grain stillage,melon lees,cornstarch protein residues,itaconic acid mother liquid,itaconic acid mycelium and sodium gluconate mycelium,were studied.Hish-activity biological protein feed,foliar fertilizer and irrigation fertilizer were generated from these wastes by applying biological/microbial technologies.Meanwhile,a whole set of technological pathways Was put forward.As a result,the optimal economical and social benefits can be obtained with low natural resource consumption and environmental costs by converting wastes into useful matters.In conclusion,through the utilization of limited resources in the whole process of reclamation and utilization of wastes,the harmony promotion Can be achieved between the economic system and the natural ecosystem.

  4. Cognitive Processes in Decisions Under Risk Are Not the Same As in Decisions Under Uncertainty

    Directory of Open Access Journals (Sweden)

    Kirsten G Volz

    2012-07-01

    Full Text Available We deal with risk versus uncertainty, a distinction that is of fundamental importance for cognitive neuroscience yet largely neglected. In a world of risk (small world, all alternatives, consequences, and probabilities are known. In uncertain (large worlds, some of this information is unknown or unknowable. Most of cognitive neuroscience studies exclusively study the neural correlates for decisions under risk (e.g., lotteries, with the tacit implication that understanding these would lead to an understanding of decision making in general. First, we show that normative strategies for decisions under risk do not generalize to uncertain worlds, where simple heuristics are often the more accurate strategies. Second, we argue that the cognitive processes for making decisions in a world of risk are not the same as those for dealing with uncertainty. Because situations with known risks are the exception rather than the rule in human evolution, it is unlikely that our brains are adapted to them. We therefore suggest a paradigm shift towards studying decision processes in uncertain worlds and provide first examples.

  5. Changes in the biological diversity and concentration of total DNA under the influence of mineral fertilizers in agrochernozemic soils

    Science.gov (United States)

    Tkhakakhova, Azida; Kutovaya, Olga; Ivanova, Ekaterina; Pavlyuchenko, Anatoly

    2014-05-01

    Chernozems represent the most valuable soil resource for Russian agriculture. Their sustainable use in intensive farming systems with preservation of the biological diversity and biological activity of these soils is of crucial importance for the agri-environmental security of Russia. We studied the influence of different rates of mineral fertilizers on the biological activity of chernozems on experimental fields of the Dokuchaev Research Institute of Agriculture in Kamennaya Steppe (Voronezh oblast). Soil samples were taken at the end of April 2013 from the plow horizon on trials with different rates of fertilization: NPK-0, NPK-60, and NPK-120 (kg/ha); a long-term fallow plot was used as an absolute control. The biological activity was analyzed by routine inoculation methods and by the molecular biology techniques based on DNA isolation from the soil samples. Quantitative parameters of the isolated and purified DNA were determined by measuring the fluorescence of the DNA preparations with added intercalating dyes; GelDoc XR system and Image Lab and TotalLab Quant. software were used. Microbiological studies showed the high biological activity of the chernozems soil in all the trials. No significant differences were found between the trials for the microbiological processes of the carbon cycle. There was a weakly expressed tendency for an increase in the activity of actinomycetes from the soil with zero fertilization (5.11 log10CFU/g) to the soil with maximum (NPK-120) fertilization (5.69 log10CFU/g) and the fallow soil (5.73 log10CFU/g); the number of cultivated micromycetes decreased from the soil with zero fertilization (4.76 log10CFU/g) to the soil with maximum fertilization (4.14 log10CFU/g) and to the fallow soil (4.1 log10CFU/g). A less equilibrium state is typical of the microorganisms participating in the nitrogen cycle. The number of cultivated aerobic and anaerobic nitrogen-fixing bacteria somewhat increased in the fertilized trials (NPK-60, NPK-120

  6. Survey of biological processes for odor reduction; Kartlaeggning och studie av biologiska processer foer luktreduktion

    Energy Technology Data Exchange (ETDEWEB)

    Arrhenius, Karine; Rosell, Lars [SP Technical Research Inst. of Sweden, Boraas (Sweden); Hall, Gunnar [SIK Swedish Inst. for Food and Biotechnology, Gothenburg (Sweden)

    2009-09-15

    This project aims to characterize chemical and subsequently odor emissions from a digester plant located closed to Boraas in Sweden (Boraas Energi och Miljoe AB). The digestion produces mainly 2 by-products, biogas and high quality organic biofertilizer. Biogas is a renewable source of electrical and heat energy and subsequently digester have a promising future. Unfortunately, release of unpleasant odours is one of the problems that may limit development of the technique as odours strongly influence the level of acceptance of the neighbours. The number of complaints due to odours depends mostly, upon the degree of odour release, the weather condition and plant environment (which influence the risks for spreading out), and the tolerance of the neighbours. These parameters are strongly variable. Many processes inside the plant distributed on a large surface may contribute to odour release. Chemical emissions were studied, in this project, by extensive sampling inside the plant. Results were then evaluated regarding risk for odour releases. The goal was to suggest controls and routines to limit releases. The conditions leading to the higher risks for odour emissions were studied by performing sampling at different periods of the year and subsequently different weather conditions. At first, places for measurement were chosen together with personal of the plant. Three zones are considered to mainly contribute to the odour emissions: the landfill region, the cisterns region and the leaching lake region. Totally 13 places were studied with regard to odour and chemical emissions under 2008-2009 at different weather conditions. Some results from a previous project (2007) are also presented here. Results show that the spreading out of can be maintained to an acceptable level as long as the plant is functioning without disturbances. The early stages of the treatment of waste should be confined in locals with closed doors to avoid spreading out of odours. Through controlled

  7. Treatment of linear alkylbenzene sulfonate (LAS) wastewater by internal electrolysis--biological contact oxidation process.

    Science.gov (United States)

    Cao, X Z; Li, Y M

    2011-01-01

    Surfactant wastewater is usually difficult to treat due to its toxicity and poor biodegradability. A separate physico-chemical or biochemical treatment method achieves a satisfactory effect with difficulty. In this study, treatment of the wastewater collected from a daily chemical plant by the combination processes of Fe/C internal electrolysis and biological contact oxidation was investigated. For the internal electrolysis process, the optimal conditions were: pH = 4-5, Fe/C = (10-15):1, air-water ratio = (10-20):1 and hydraulic retention time (HRT)= 2 h. For the biological contact oxidation process, the optimal conditions were: HRT = 12 h, DO = 4.0-5.0 mg/L. Treated by the above combined processes, the effluent could meet the I-grade criteria specified in Integrated Wastewater Discharge Standard of China (GB 8978-1996). The results provide valuable information for full-scale linear alkylbenzene sulfonate wastewater treatment. PMID:22053469

  8. Biodrying for mechanical-biological treatment of wastes: A review of process science and engineering

    OpenAIRE

    Velis, C.A.; Longhurst, Philip J.; Drew, Gillian H; Smith, Richard; Pollard, Simon J. T.

    2009-01-01

    Biodrying is a variation of aerobic decomposition, used within mechanical–biological treatment (MBT) plants to dry and partially stabilise residual municipal waste. Biodrying MBT plants can produce a high quality solid recovered fuel (SRF), high in biomass content. Here, process objectives, operating principles, reactor designs, parameters for process monitoring and control, and their effect on biodried output quality are critically examined. Within the biodrying reactors, w...

  9. Treatment of Textile Wastewater by Combining Biological Processes and Advanced Oxidation

    OpenAIRE

    Punzi, Marisa

    2015-01-01

    Treatment of textile wastewater is challenging because the water contains toxic compounds that have low biodegradability. Dyes, detergents, surfactants, biocides and more are used to improve the textile process and to make the clothes resistant to physical, chemical and biological agents. New technologies have been developed in the last decades and in particular Advanced Oxidation Processes (AOPs) have shown considerable potential for treatment of industrial effluents. These pr...

  10. Improvement of Chickpea Growth and Biological N Fixation under Water Salinity Stress

    International Nuclear Information System (INIS)

    This work had been carried out under greenhouse conditions of IAM-Bari, aimed at evaluating the effects of water and soil salinity on growth, yield and nitrogen fixation by chickpea plants inoculated with selected Rhizobium strains. Isotope dilution approach (15N) was applied for quantification of biological N fixation and portions derived from fertilizer and soil (Ndff and Ndfs, respectively). Number of pods was decreased gradually with increasing water salinity levels. High levels of salinity negatively affected shoot, root dry matter, seed yield and N accumulated in shoots and roots. A slight difference in seed N was noticed between fresh water and 9 dS/m treatments. Nitrogen derived from fertilizer by shoots was slightly increased with 3, 6 and 9 dS/m treatments, while they were notably higher than the fresh water control. More than 80% and 70% of N accumulated in shoots and seeds, respectively were derived from fixation. Portions of N2-fixed in shoots was decreased with the level of 3 dS/m as compared to the fresh water, then tended to increase with both 6 and 9 dS/m treatments. Stability of %Ndfa with increasing salinity was noticed with seeds-N. Soil-N came next as a fraction of nitrogen demand, where it increased with increasing water salinity levels. Under adverse conditions of salinity, the plants offered some of their N requirements from the other two N sources. Application of the suitable Rhizobium bacteria strains could be profits for both of the plant growth and soil fertility via N2 fixation. (Authors)

  11. Proliferation of diversified clostridial species during biological soil disinfestation incorporated with plant biomass under various conditions.

    Science.gov (United States)

    Mowlick, Subrata; Takehara, Toshiaki; Kaku, Nobuo; Ueki, Katsuji; Ueki, Atsuko

    2013-09-01

    Biological soil disinfestation (BSD) involves the anaerobic decomposition of plant biomass by microbial communities leading to control of plant pathogens. We analyzed bacterial communities in soil of a model experiment of BSD, as affected by biomass incorporation under various conditions, to find out the major anaerobic bacterial groups which emerged after BSD treatments. The soil was treated with Brassica juncea plants, wheat bran, or Avena strigosa plants, irrigated at 20 or 30 % moisture content and incubated at 25-30 °C for 17 days. The population of Fusarium oxysporum f. sp. spinaciae incorporated at the start of the experiment declined markedly for some BSD conditions and rather high concentrations of acetate and butyrate were detected from these BSD-treated soils. The polymerase chain reaction-denaturing gradient gel electrophoresis analysis based on the V3 region of 16S rRNA gene sequences from the soil DNA revealed that bacterial profiles greatly changed according to the treatment conditions. Based on the clone library analysis, phylogenetically diverse clostridial species appeared exceedingly dominant in the bacterial community of BSD soil incorporated with Brassica plants or wheat bran, in which the pathogen was suppressed completely. Species in the class Clostridia such as Clostridium saccharobutylicum, Clostridium acetobutylicum, Clostridium xylanovorans, Oxobacter pfennigii, Clostridium pasteurianum, Clostridium sufflavum, Clostridium cylindrosporum, etc. were commonly recognized as closely related species of the dominant clone groups from these soil samples. PMID:23132344

  12. How to Build a Course in Mathematical–Biological Modeling: Content and Processes for Knowledge and Skill

    OpenAIRE

    Hoskinson, Anne-Marie

    2010-01-01

    Biological problems in the twenty-first century are complex and require mathematical insight, often resulting in mathematical models of biological systems. Building mathematical–biological models requires cooperation among biologists and mathematicians, and mastery of building models. A new course in mathematical modeling presented the opportunity to build both content and process learning of mathematical models, the modeling process, and the cooperative process. There was little guidance fro...

  13. Exploitation of biological wastes for the production of value-added products under solid-state fermentation conditions.

    Science.gov (United States)

    Rodríguez Couto, Susana

    2008-07-01

    Biological wastes contain several reusable substances of high value such as soluble sugars and fibre. Direct disposal of such wastes to soil or landfill causes serious environmental problems. Thus, the development of potential value-added processes for these wastes is highly attractive. These biological wastes can be used as support-substrates in solid-state fermentation (SSF) to produce industrially relevant metabolites with great economical advantage. In addition, it is an environmentally friendly method of waste management. This paper reviews the reutilization of biological wastes for the production of value-added products using the SSF technique. PMID:18543242

  14. Microfluidic solutions enabling continuous processing and monitoring of biological samples: A review.

    Science.gov (United States)

    Karle, Marc; Vashist, Sandeep Kumar; Zengerle, Roland; von Stetten, Felix

    2016-07-27

    The last decade has witnessed tremendous advances in employing microfluidic solutions enabling Continuous Processing and Monitoring of Biological Samples (CPMBS), which is an essential requirement for the control of bio-processes. The microfluidic systems are superior to the traditional inline sensors due to their ability to implement complex analytical procedures, such as multi-step sample preparation, and enabling the online measurement of parameters. This manuscript provides a backgound review of microfluidic approaches employing laminar flow, hydrodynamic separation, acoustophoresis, electrophoresis, dielectrophoresis, magnetophoresis and segmented flow for the continuous processing and monitoring of biological samples. The principles, advantages and limitations of each microfluidic approach are described along with its potential applications. The challenges in the field and the future directions are also provided. PMID:27251944

  15. Natural physical and biological processes compromise the long-term performance of compacted soil caps

    International Nuclear Information System (INIS)

    Compacted soil barriers are components of essentially all caps placed on closed waste disposal sites. The intended functions of soil barriers in waste facility caps include restricting infiltration of water and release of gases and vapors, either independently or in combination with synthetic membrane barriers, and protecting other manmade or natural barrier components. Review of the performance of installed soil barriers and of natural processes affecting their performance indicates that compacted soil caps may function effectively for relatively short periods (years to decades), but natural physical and biological processes can be expected to cause them to fail in the long term (decades to centuries). This paper addresses natural physical and biological processes that compromise the performance of compacted soil caps and suggests measures that may reduce the adverse consequences of these natural failure mechanisms

  16. Optimization and Control of Pressure Swing Adsorption Processes Under Uncertainty

    KAUST Repository

    Khajuria, Harish

    2012-03-21

    The real-time periodic performance of a pressure swing adsorption (PSA) system strongly depends on the choice of key decision variables and operational considerations such as processing steps and column pressure temporal profiles, making its design and operation a challenging task. This work presents a detailed optimization-based approach for simultaneously incorporating PSA design, operational, and control aspects under the effect of time variant and invariant disturbances. It is applied to a two-bed, six-step PSA system represented by a rigorous mathematical model, where the key optimization objective is to maximize the expected H2 recovery while achieving a closed loop product H2 purity of 99.99%, for separating 70% H2, 30% CH4 feed. The benefits over sequential design and control approach are shown in terms of closed-loop recovery improvement of more than 3%, while the incorporation of explicit/multiparametric model predictive controllers improves the closed loop performance. © 2012 American Institute of Chemical Engineers (AIChE).

  17. Complex physiological and molecular processes underlying root gravitropism

    Science.gov (United States)

    Chen, Rujin; Guan, Changhui; Boonsirichai, Kanokporn; Masson, Patrick H.

    2002-01-01

    Gravitropism allows plant organs to guide their growth in relation to the gravity vector. For most roots, this response to gravity allows downward growth into soil where water and nutrients are available for plant growth and development. The primary site for gravity sensing in roots includes the root cap and appears to involve the sedimentation of amyloplasts within the columella cells. This process triggers a signal transduction pathway that promotes both an acidification of the wall around the columella cells, an alkalinization of the columella cytoplasm, and the development of a lateral polarity across the root cap that allows for the establishment of a lateral auxin gradient. This gradient is then transmitted to the elongation zones where it triggers a differential cellular elongation on opposite flanks of the central elongation zone, responsible for part of the gravitropic curvature. Recent findings also suggest the involvement of a secondary site/mechanism of gravity sensing for gravitropism in roots, and the possibility that the early phases of graviresponse, which involve differential elongation on opposite flanks of the distal elongation zone, might be independent of this auxin gradient. This review discusses our current understanding of the molecular and physiological mechanisms underlying these various phases of the gravitropic response in roots.

  18. Anticipatory processes under academic stress: an ERP study.

    Science.gov (United States)

    Duan, Hongxia; Yuan, Yiran; Yang, Can; Zhang, Liang; Zhang, Kan; Wu, Jianhui

    2015-03-01

    It is well known that preparing for and taking high-stakes exams has a significant influence on the emotional and physiological wellbeing of exam-takers, but few studies have investigated the resulting cognitive changes. The current study examined the effect of examination-induced academic stress on anticipation in information processing. Anticipation was indexed using the contingent negative variation (CNV). Electroencephalograms (EEG) were collected from 42 participants using the classic S1-S2 paradigm. These participants were preparing for the Chinese National Postgraduate Entrance Exam (NPEE). EEGs were also collected from 21 age-matched, non-exam comparison participants. The levels of perceived stress and state anxiety were higher and both the initial CNV (iCNV) and the late CNV (lCNV) were more negative in the exam group than in the non-exam group. These results suggest that participants under academic stress experienced greater anticipation of upcoming events. More important, for the non-exam group, state anxiety was positively related to both the iCNV and lCNV amplitude, and this correlation existed when trait anxiety was controlled; however, there was no such relationship in the exam group. These results suggested that the cortical anticipatory activity in the high-stressed exam group reached the maximum ceiling, leaving little room for transient increases in state anxiety. PMID:25659936

  19. Behavioral processes underlying the decline of narcissists' popularity over time.

    Science.gov (United States)

    Leckelt, Marius; Küfner, Albrecht C P; Nestler, Steffen; Back, Mitja D

    2015-11-01

    Following a dual-pathway approach to the social consequences of grandiose narcissism, we investigated the behavioral processes underlying (a) the decline of narcissists' popularity in social groups over time and (b) how this is differentially influenced by the 2 narcissism facets admiration and rivalry. In a longitudinal laboratory study, participants (N = 311) first provided narcissism self-reports using the Narcissistic Personality Inventory and the Narcissistic Admiration and Rivalry Questionnaire, and subsequently interacted with each other in small groups in weekly sessions over the course of 3 weeks. All sessions were videotaped and trained raters coded participants' behavior during the interactions. Within the sessions participants provided mutual ratings on assertiveness, untrustworthiness, and likability. Results showed that (a) over time narcissists become less popular and (b) this is reflected in an initially positive but decreasing effect of narcissistic admiration as well as an increasing negative effect of narcissistic rivalry. As hypothesized, these patterns of results could be explained by means of 2 diverging behavioral pathways: The negative narcissistic pathway (i.e., arrogant-aggressive behavior and being seen as untrustworthy) plays an increasing role and is triggered by narcissistic rivalry, whereas the relevance of the positive narcissistic pathway (i.e., dominant-expressive behavior and being seen as assertive) triggered by narcissistic admiration decreases over time. These findings underline the utility of a behavioral pathway approach for disentangling the complex effects of personality on social outcomes. PMID:26191958

  20. Preparing investigations for determining the mechanism in the desulfurization of biogas with a biologic laundry process; Vorbereitende Untersuchungen zur Ermittlung der Mechanismen in der Entschwefelung von Biogas mit einem biologischen Waschverfahren

    Energy Technology Data Exchange (ETDEWEB)

    Genzowsky, Kristoffer

    2010-05-15

    The author of the contribution under consideration examines an innovative desulfurization process of biogas from agricultural biogas plants. For this purpose, an existing pilot plant was operated at a 200-L experimental biogas digester. It is used to record and classify physical and biological processes in the desulfurization process. The degradation efficiency of the biological desulfurization process is determined. Recommendations for an optimized pilot plant will be given.

  1. Subcortical processing of speech regularities underlies reading and music aptitude in children

    Directory of Open Access Journals (Sweden)

    Strait Dana L

    2011-10-01

    Full Text Available Abstract Background Neural sensitivity to acoustic regularities supports fundamental human behaviors such as hearing in noise and reading. Although the failure to encode acoustic regularities in ongoing speech has been associated with language and literacy deficits, how auditory expertise, such as the expertise that is associated with musical skill, relates to the brainstem processing of speech regularities is unknown. An association between musical skill and neural sensitivity to acoustic regularities would not be surprising given the importance of repetition and regularity in music. Here, we aimed to define relationships between the subcortical processing of speech regularities, music aptitude, and reading abilities in children with and without reading impairment. We hypothesized that, in combination with auditory cognitive abilities, neural sensitivity to regularities in ongoing speech provides a common biological mechanism underlying the development of music and reading abilities. Methods We assessed auditory working memory and attention, music aptitude, reading ability, and neural sensitivity to acoustic regularities in 42 school-aged children with a wide range of reading ability. Neural sensitivity to acoustic regularities was assessed by recording brainstem responses to the same speech sound presented in predictable and variable speech streams. Results Through correlation analyses and structural equation modeling, we reveal that music aptitude and literacy both relate to the extent of subcortical adaptation to regularities in ongoing speech as well as with auditory working memory and attention. Relationships between music and speech processing are specifically driven by performance on a musical rhythm task, underscoring the importance of rhythmic regularity for both language and music. Conclusions These data indicate common brain mechanisms underlying reading and music abilities that relate to how the nervous system responds to

  2. Reduction of fine particulate matter in urban areas through biological fixation processes

    International Nuclear Information System (INIS)

    The article retrieves an experiment carried out in Milan under the tunnel connecting Viale Brianza and Viale Lunigiana that was aimed at assessing the efficacy of the system patented by the company Eurovix for the reduction of particulate matter by means of biological fixation of PM10 to the ground. at the same time we evaluated the reduction, by means of selective enzymatic degradation of IPA concentration absorbed on particulate matter

  3. Sex Differences in the Development of Brain Mechanisms for Processing Biological Motion

    OpenAIRE

    Anderson, L.C.; Bolling, D. Z.; Schelinski, S.; Coffman, M.C.; Pelphrey, K.A.; Kaiser, M.D.

    2013-01-01

    Disorders related to social functioning including autism and schizophrenia differ drastically in incidence and severity between males and females. Little is known about the neural systems underlying these sex-linked differences in risk and resiliency. Using functional magnetic resonance imaging and a task involving the visual perception of point-light displays of coherent and scrambled biological motion, we discovered sex differences in the development of neural systems for basic social perce...

  4. Quantum Biology

    CERN Document Server

    Sergi, Alessandro

    2009-01-01

    A critical assessment of the recent developments of molecular biology is presented. The thesis that they do not lead to a conceptual understanding of life and biological systems is defended. Maturana and Varela's concept of autopoiesis is briefly sketched and its logical circularity avoided by postulating the existence of underlying {\\it living processes}, entailing amplification from the microscopic to the macroscopic scale, with increasing complexity in the passage from one scale to the other. Following such a line of thought, the currently accepted model of condensed matter, which is based on electrostatics and short-ranged forces, is criticized. It is suggested that the correct interpretation of quantum dispersion forces (van der Waals, hydrogen bonding, and so on) as quantum coherence effects hints at the necessity of including long-ranged forces (or mechanisms for them) in condensed matter theories of biological processes. Some quantum effects in biology are reviewed and quantum mechanics is acknowledge...

  5. Cell biological mechanism for triggering of ABA accumula-tion under water stress in Vicia faba leaves

    Institute of Scientific and Technical Information of China (English)

    张大鹏; 何芳莲; 贾文锁

    2001-01-01

    Water stress-induced ABA accumulation is a cellular signaling process from water stress perception to activation of genes encoding key enzymes of ABA biosynthesis, of which the water stress-signal perception by cells or triggering mechanism of the ABA accumulation is the center in the whole process of ABA related-stress signaling in plants. The cell biological mechanism for triggering of ABA accumulation under water stress was studied in leaves of Vicia faba. Mannitol at 890 mmol· kg-1 osmotic concentration induced an increase of more than 5 times in ABA concentra-tion in detached leaf tissues, but the same concentration of mannitol only induced an increase of less than 40 % in ABA concentration in protoplasts. Like in detached leaf tissues, ABA concentra-tion in isolated cells increased more than 10 times under the treatment of mannitol at 890 mmol·kg-1 concentration, suggesting that the interaction between plasmalemma and cell wall was essential to triggering of the water stress-induced ABA accumulation. Neither Ca2+-che- lating agent EGTA nor Ca2+ channel activator A23187 nor the two cytoskeleton inhibitors, colchicine and cyto-chalasin B, had any effect on water stress-induced ABA accumulation. Interestingly water stress-induced ABA accumulation was effectively inhibited by a non-plasmalemma-perme- able sulfhy-dryl-modifier PCMBS (p-chloromercuriphenyl-sulfonic acid), suggesting that plasmalemma pro-tein(s) may be involved in the triggering of water stress-induced ABA accumulation, and the protein may contain sulfhydryl group at its function domain.

  6. Quantum Biology

    Directory of Open Access Journals (Sweden)

    Alessandro Sergi

    2009-06-01

    Full Text Available A critical assessment of the recent developmentsof molecular biology is presented.The thesis that they do not lead to a conceptualunderstanding of life and biological systems is defended.Maturana and Varela's concept of autopoiesis is briefly sketchedand its logical circularity avoided by postulatingthe existence of underlying living processes,entailing amplification from the microscopic to the macroscopic scale,with increasing complexity in the passage from one scale to the other.Following such a line of thought, the currently accepted model of condensed matter, which is based on electrostatics and short-ranged forces,is criticized. It is suggested that the correct interpretationof quantum dispersion forces (van der Waals, hydrogen bonding, and so onas quantum coherence effects hints at the necessity of includinglong-ranged forces (or mechanisms for them incondensed matter theories of biological processes.Some quantum effects in biology are reviewedand quantum mechanics is acknowledged as conceptually important to biology since withoutit most (if not all of the biological structuresand signalling processes would not even exist. Moreover, it is suggested that long-rangequantum coherent dynamics, including electron polarization,may be invoked to explain signal amplificationprocess in biological systems in general.

  7. Biological Denitrification of High Nitrate Processing Wastewaters from Explosives Production Plant

    OpenAIRE

    Cyplik, Paweł; Marecik, Roman; Piotrowska-Cyplik, Agnieszka; Olejnik, Anna; Drożdżyńska, Agnieszka; Chrzanowski, Łukasz

    2011-01-01

    Wastewater samples originating from an explosives production plant (3,000 mg N l−1 nitrate, 4.8 mg l−1 nitroglycerin, 1.9 mg l−1 nitroglycol and 1,200 mg l−1 chemical oxygen demand) were subjected to biological purification. An attempt to completely remove nitrate and to decrease the chemical oxygen demand was carried out under anaerobic conditions. A soil isolated microbial consortium capable of biodegrading various organic compounds and reduce nitrate to atmospheric nitrogen under anaerobic...

  8. THE STUDY OF THE BIOLOGICAL PROPERTIES OF PROBIOTIC LACTOBACILLUS SPP. STRAINS UNDER AEROBIC AND MICROAEROPHILIC CULTIVATION CONDITIONS

    Directory of Open Access Journals (Sweden)

    Babych E.M.

    2014-01-01

    Full Text Available The biological properties (growth characteristics, adhesive activity and sensitivity to antimicrobial of probiotic Lactobacillus strains were studied under different gas composition of incubation atmosphere. It was found that the number of viable lactobacilli cells in the one dose of investigated probiotic preparations was lower than it was claimed by the manufacturer. Gas composition of incubation atmosphere affects cell viability of probiotic strains. The number of colony forming units of lactobacilli under microaerophilic conditions increased in 1,19-1,33 times as compared with aerobic conditions. It was proved that adhesive activity of probiotic Lactobacillus strains and sensitivity to 2th, 3th, 4th generations of cephalosporins (cefuroxime, cefotaxime, cefepime and tetracyclines (doxycycline also increased under microaerophilic conditions. The changes of the biological properties of lactobacilli under different cultivation conditions require further study for optimization of correction of dysbiotic disorders.

  9. Oil refinery wastewater treatment using coupled electrocoagulation and fixed film biological processes

    Science.gov (United States)

    Pérez, Laura S.; Rodriguez, Oscar M.; Reyna, Silvia; Sánchez-Salas, José Luis; Lozada, J. Daniel; Quiroz, Marco A.; Bandala, Erick R.

    2016-02-01

    Oil refinery wastewater was treated using a coupled treatment process including electrocoagulation (EC) and a fixed film aerobic bioreactor. Different variables were tested to identify the best conditions using this procedure. After EC, the effluent was treated in an aerobic biofilter. EC was capable to remove over 88% of the overall chemical oxygen demand (COD) in the wastewater under the best working conditions (6.5 V, 0.1 M NaCl, 4 electrodes without initial pH adjustment) with total petroleum hydrocarbon (TPH) removal slightly higher than 80%. Aluminum release from the electrodes to the wastewater was found an important factor for the EC efficiency and closely related with several operational factors. Application of EC allowed to increase the biodegradability of the sample from 0.015, rated as non-biodegradable, up to 0.5 widely considered as biodegradable. The effluent was further treated using an aerobic biofilter inoculated with a bacterial consortium including gram positive and gram negative strains and tested for COD and TPH removal from the EC treated effluent during 30 days. Cell count showed the typical bacteria growth starting at day three and increasing up to a maximum after eight days. After day eight, cell growth showed a plateau which agreed with the highest decrease on contaminant concentration. Final TPHs concentration was found about 600 mgL-1 after 30 days whereas COD concentration after biological treatment was as low as 933 mgL-1. The coupled EC-aerobic biofilter was capable to remove up to 98% of the total TPH amount and over 95% of the COD load in the oil refinery wastewater.

  10. Heterogeneous processes at the intersection of chemistry and biology: A computational approach

    International Nuclear Information System (INIS)

    Heterogeneous processes hold the key to understanding many problems in biology and atmospheric science. In particular, recent experiments have shown that heterogeneous chemistry at the surface of sea-salt aerosols plays a large role in important atmospheric processes with far reaching implications towards understanding of the fate and transport of aerosolized chemical weapons (i.e. organophosphates such as sarin and VX). Unfortunately, the precise mechanistic details of the simplest surface enhanced chemical reactions remain unknown. Understanding heterogeneous processes also has implications in the biological sciences. Traditionally, it is accepted that enzymes catalyze reactions by stabilizing the transition state, thereby lowering the free energy barrier. However, recent findings have shown that a multitude of phenomena likely contribute to the efficiency of enzymes, such as coupled protein motion, quantum mechanical tunneling, or strong electrostatic binding. The objective of this project was to develop and validate a single computational framework based on first principles simulations using tera-scale computational resources to answer fundamental scientific questions about heterogeneous chemical processes relevant to atmospheric chemistry and biological sciences

  11. Group processing in an undergraduate biology course for preservice teachers: Experiences and attitudes

    Science.gov (United States)

    Schellenberger, Lauren Brownback

    Group processing is a key principle of cooperative learning in which small groups discuss their strengths and weaknesses and set group goals or norms. However, group processing has not been well-studied at the post-secondary level or from a qualitative or mixed methods perspective. This mixed methods study uses a phenomenological framework to examine the experience of group processing for students in an undergraduate biology course for preservice teachers. The effect of group processing on students' attitudes toward future group work and group processing is also examined. Additionally, this research investigated preservice teachers' plans for incorporating group processing into future lessons. Students primarily experienced group processing as a time to reflect on past performance. Also, students experienced group processing as a time to increase communication among group members and become motivated for future group assignments. Three factors directly influenced students' experiences with group processing: (1) previous experience with group work, (2) instructor interaction, and (3) gender. Survey data indicated that group processing had a slight positive effect on students' attitudes toward future group work and group processing. Participants who were interviewed felt that group processing was an important part of group work and that it had increased their group's effectiveness as well as their ability to work effectively with other people. Participants held positive views on group work prior to engaging in group processing, and group processing did not alter their atittude toward group work. Preservice teachers who were interviewed planned to use group work and a modified group processing protocol in their future classrooms. They also felt that group processing had prepared them for their future professions by modeling effective collaboration and group skills. Based on this research, a new model for group processing has been created which includes extensive

  12. Biological Production in Lakes. Physical Processes in Terrestrial and Aquatic Ecosystems, Ecological Processes.

    Science.gov (United States)

    Walters, R. A.; Carey, G. F.

    These materials were designed to be used by life science students for instruction in the application of physical theory to ecosystem operation. Most modules contain computer programs which are built around a particular application of a physical process. Primary production in aquatic ecosystems is carried out by phytoplankton, microscopic plants…

  13. 78 FR 74218 - Imposition of Additional Sanctions on Syria Under the Chemical and Biological Weapons Control and...

    Science.gov (United States)

    2013-12-10

    ... Imposition of Additional Sanctions on Syria Under the Chemical and Biological Weapons Control and Warfare.... ACTION: Notice. SUMMARY: On August 2, 2013, a determination was made that the Government of Syria used... Notice 8460. That determination resulted in sanctions against the Government of Syria. Section 307(b)...

  14. Large-scale photonic neural networks with biology-like processing elements: the role of electron-trapping materials

    Science.gov (United States)

    Farhat, Nabil H.; Wen, Zhimin

    1995-08-01

    Neural networks employing pulsating biology-oriented integrate-and-fire (IF) model neurons, that can exhibit synchronicity (phase-locking), bifurcation, and chaos, have features that make them potentially useful for learning and recognition of spatio-temporal patterns, generation of complex motor control, emulating higher-level cortical functions like feature binding, separation of object from background, cognition and other higher-level functions; all of which are beyond the ready reach of nonpulsating sigmoidal neuron networks. The spiking nature of biology-oriented neural networks makes their study in digital hardware impractical. Prange and Klar convincingly argued that the best way of realizing such networks is through analog CMOS technology rather than digital hardware. They showed, however, that the number of neurons one can accommodate on a VLSI chip limited to a hundred or so, even when submicron CMOS technology is used, because of the relatively large size of the neuron/dendrite cell. One way of reducing the size of neuron/dendrite cell is to reduce the structural complexity of the cell by realizing some of the processes needed in the cell's operation externally to the chip and by coupling these processes to the cell optically. Two such processes are the relaxation mechanism of the IF neuron and dendritic-tree processing. We have shown, by examining the blue light impulse response of electron trapping materials (ETMs) used under simultaneous infrared and blue light bias, that these materials offer features that can be used in realizing both the optical relaxation and synapto-dendritic response mechanisms. Experimental results demonstrating the potential of this approach in realizing dense arrays of biology-oriented neuron/dendrite cells will be presented, focusing on the concept and design of ETM-based image intensifier as new enabling technology.

  15. Protein-polymer nano-machines. Towards synthetic control of biological processes

    Directory of Open Access Journals (Sweden)

    Alexander Cameron

    2004-09-01

    Full Text Available Abstract The exploitation of nature's machinery at length scales below the dimensions of a cell is an exciting challenge for biologists, chemists and physicists, while advances in our understanding of these biological motifs are now providing an opportunity to develop real single molecule devices for technological applications. Single molecule studies are already well advanced and biological molecular motors are being used to guide the design of nano-scale machines. However, controlling the specific functions of these devices in biological systems under changing conditions is difficult. In this review we describe the principles underlying the development of a molecular motor with numerous potential applications in nanotechnology and the use of specific synthetic polymers as prototypic molecular switches for control of the motor function. The molecular motor is a derivative of a TypeI Restriction-Modification (R-M enzyme and the synthetic polymer is drawn from the class of materials that exhibit a temperature-dependent phase transition. The potential exploitation of single molecules as functional devices has been heralded as the dawn of new era in biotechnology and medicine. It is not surprising, therefore, that the efforts of numerous multidisciplinary teams 12. have been focused in attempts to develop these systems. as machines capable of functioning at the low sub-micron and nanometre length-scales 3. However, one of the obstacles for the practical application of single molecule devices is the lack of functional control methods in biological media, under changing conditions. In this review we describe the conceptual basis for a molecular motor (a derivative of a TypeI Restriction-Modification enzyme with numerous potential applications in nanotechnology and the use of specific synthetic polymers as prototypic molecular switches for controlling the motor function 4.

  16. The neurophysiology of human biological motion processing: a high-density electrical mapping study.

    Science.gov (United States)

    Krakowski, Aaron I; Ross, Lars A; Snyder, Adam C; Sehatpour, Pejman; Kelly, Simon P; Foxe, John J

    2011-05-01

    The neural processing of biological motion (BM) is of profound experimental interest since it is often through the movement of another that we interpret their immediate intentions. Neuroimaging points to a specialized cortical network for processing biological motion. Here, high-density electrical mapping and source-analysis techniques were employed to interrogate the timing of information processing across this network. Participants viewed point-light-displays depicting standard body movements (e.g. jumping), while event-related potentials (ERPs) were recorded and compared to ERPs to scrambled motion control stimuli. In a pair of experiments, three major phases of BM-specific processing were identified: 1) The earliest phase of BM-sensitive modulation was characterized by a positive shift of the ERP between 100 and 200 ms after stimulus onset. This modulation was observed exclusively over the right hemisphere and source-analysis suggested a likely generator in close proximity to regions associated with general motion processing (KO/hMT). 2) The second phase of BM-sensitivity occurred from 200 to 350 ms, characterized by a robust negative-going ERP modulation over posterior middle temporal regions bilaterally. Source-analysis pointed to bilateral generators at or near the posterior superior temporal sulcus (STS). 3) A third phase of processing was evident only in our second experiment, where participants actively attended the BM aspect of the stimuli, and was manifest as a centro-parietal positive ERP deflection, likely related to later cognitive processes. These results point to very early sensory registration of biological motion, and highlight the interactive role of the posterior STS in analyzing the movements of other living organisms. PMID:21276862

  17. HRI catalytic two-stage liquefaction (CTSL) process materials: chemical analysis and biological testing

    Energy Technology Data Exchange (ETDEWEB)

    Wright, C.W.; Later, D.W.

    1985-12-01

    This report presents data from the chemical analysis and biological testing of coal liquefaction materials obtained from the Hydrocarbon Research, Incorporated (HRI) catalytic two-stage liquefaction (CTSL) process. Materials from both an experimental run and a 25-day demonstration run were analyzed. Chemical methods of analysis included adsorption column chromatography, high-resolution gas chromatography, gas chromatography/mass spectrometry, low-voltage probe-inlet mass spectrometry, and proton nuclear magnetic resonance spectroscopy. The biological activity was evaluated using the standard microbial mutagenicity assay and an initiation/promotion assay for mouse-skin tumorigenicity. Where applicable, the results obtained from the analyses of the CTSL materials have been compared to those obtained from the integrated and nonintegrated two-stage coal liquefaction processes. 18 refs., 26 figs., 22 tabs.

  18. Marketing the use of the space environment for the processing of biological and pharmaceutical materials

    Science.gov (United States)

    1984-01-01

    The perceptions of U.S. biotechnology and pharmaceutical companies concerning the potential use of the space environment for the processing of biological substances was examined. Physical phenomena that may be important in space-base processing of biological materials are identified and discussed in the context of past and current experiment programs. The capabilities of NASA to support future research and development, and to engage in cooperative risk sharing programs with industry are discussed. Meetings were held with several biotechnology and pharmaceutical companies to provide data for an analysis of the attitudes and perceptions of these industries toward the use of the space environment. Recommendations are made for actions that might be taken by NASA to facilitate the marketing of the use of the space environment, and in particular the Space Shuttle, to the biotechnology and pharmaceutical industries.

  19. Humin-based complexes and study of their biological activity under irradiation

    International Nuclear Information System (INIS)

    Full text : Several experimental studies have indicated that humin acids has features such as antioxidant activity, antiradiation activity and other. It is known that the humin acids are biologically active organic compounds with characteristics of high polyfunctional and complexing acids. The biological activity of these compounds is connected with presence of phenolic and hydroxyl groups. The main goal of this research is to increase biological activity and sorption properties of humin acids and obtaining of their modified and enriched forms with organic minerals and their analysis on model plant objects. Humin acids solutions can stimulate the life activity of irradiated plants with critical doses and plants growing in the polluted soils with radionuclides

  20. A Comparative Study of the Bacterial Community in Denitrifying and Traditional Enhanced Biological Phosphorus Removal Processes

    OpenAIRE

    Lv, Xiao-Mei; Shao, Ming-Fei; Li, Chao-Lin; Li, Ji; Gao, Xin-lei; Sun, Fei-Yun

    2014-01-01

    Denitrifying phosphorus removal is an attractive wastewater treatment process due to its reduced carbon source demand and sludge minimization potential. Two lab-scale sequencing batch reactors (SBRs) were operated in alternating anaerobic-anoxic (A-A) or anaerobic-oxic (A-O) conditions to achieve denitrifying enhanced biological phosphate removal (EBPR) and traditional EBPR. No significant differences were observed in phosphorus removal efficiencies between A-A SBR and A-O SBR, with phosphoru...

  1. Influence of Technological Processes on Biologically Active Compounds of Produced Grapes Juices

    Czech Academy of Sciences Publication Activity Database

    Tříska, Jan; Balík, J.; Strohalm, J.; Novotná, P.; Vrchotová, Naděžda; Lefnerová, D.; Landfeld, A.; Híc, P.; Tománková, E.; Veverka, J.; Houška, M.

    2016-01-01

    Roč. 9, č. 3 (2016), s. 421-429. ISSN 1935-5130 R&D Projects: GA MŠk(CZ) LO1415; GA MZe QJ1210258; GA MZe QI91B094 Institutional support: RVO:67179843 Keywords : Grapevine juices * Thermomaceration * Biologically active compounds * Antioxidative capacity * Total polyphenols * Antimutagenic activity Subject RIV: GM - Food Processing Impact factor: 2.691, year: 2014

  2. Influence of physical and chemical factors on biological leaching process of copper from printed circuit boards

    OpenAIRE

    Willner, J

    2013-01-01

    The article presents the results of the research regarding the biological leaching of this metal from electronic wastes components in the form of printed circuit boards. The purpose of the study was to evaluate the influence of some physical and chemical factors (e.g. pH, oxidation-reduction potential) on bioleaching process and efficiency of copper transfer from solid phase into solution. Bioleaching experiments were carried out with pure cultures of Acidithiobacillus ferrooxidans. The obtai...

  3. Diurnal rhythmicity in biological processes involved in bioavailability of functional food factors

    OpenAIRE

    Tsurusaki, Takashi; Sakakibara, Hiroyuki; Aoshima, Yoshiki; Yamazaki, Shunsuke; Sakono, Masanobu; Shimoi, Kayoko

    2013-01-01

    In the past few decades, many types of functional factors have been identified in dietary foods; for example, flavonoids are major groups widely distributed in the plant kingdom. However, the absorption rates of the functional food factors are usually low, and many of these are difficult to be absorbed in the intact forms because of metabolization by biological processes during absorption. To gain adequate beneficial effects, it is therefore mandatory to know whether functional food factors a...

  4. The effect of key process operational conditions on enhanced biological phosphorus removal from wastewater

    OpenAIRE

    Carvalheira, Mónica Isabel Gonçalves

    2014-01-01

    Enhanced biological phosphorus removal (EBPR) is the most economic and sustainable option used in wastewater treatment plants (WWTPs) for phosphorus removal. In this process it is important to control the competition between polyphosphate accumulating organisms (PAOs) and glycogen accumulating organisms (GAOs), since EBPR deterioration or failure can be related with the proliferation of GAOs over PAOs. This thesis is focused on the effect of operational conditions (volatile fatty acid (VFA) c...

  5. Degradation of aqueous methyl tert-butyl ether by photochemical, biological, and their combined processes

    Directory of Open Access Journals (Sweden)

    Azadeh Asadi

    2006-01-01

    Full Text Available The degradation of aqueous methyl tert-butyl ether (MTBE at relatively high concentrations was investigated by various photo-induced oxidation processes such as UV/H2O2 and UV/TiO2 as well as biological processes and their combination. It was shown that the degradation of MTBE by UV/H2O2 and TiO2 photocatalytic followed a first-order model with apparent rate constant of 1.31×10−1 and 1.21×10−2 min-1, respectively. It was observed that UV/H2O2/TiO2 process did not have any advantages over each of the other processes alone. The biodegradation of methyl tert-butyl ether (MTBE was evaluated using aerobic mixed culture with three different approaches, including ultimate biological oxygen demand (BODU assessment, nonacclimated, and acclimated mixed cultures. The apparent rate constant for the biodegradation of MTBE by nonacclimated mixed culture was 4.36×10−2 day-1. It was shown that the acclimatization of the mixed cultures enhanced the rate of biodegradation of MTBE to 3.24×10−1mg L-1h-1. Finally, the effects of the photocatalytic pretreatment of aqueous MTBE on its subsequent biological treatment were studied. It was observed that the rate of bioreaction was not enhanced and the photocatalytic pretreatment had adverse effects on its biological treatment so that the apparent rate constant decreased to 2.83×10−1 mg L-1h-1.

  6. Diffusion processes in biological membranes studied by molecular dynamics simulations and analytical models

    OpenAIRE

    Stachura, Slawomir,

    2014-01-01

    Various recent experimental and simulation studies show that the lateral diffusion of molecules in biological membranes exhibits anomalies, in the sense that the molecular mean square displacements increase sub-linearily instead of linearly with time. Mathematically, such diffusion processes can be modeled by generalized diffusion equations which involve an additional fractional time derivative compared to the corresponding normal counterpart. The aim of this thesis is to gain some more physi...

  7. An iron-facilitated chemical and biological process for phosphorus removal and recovery during wastewater treatment

    OpenAIRE

    Zhao, Kang; 趙鈧

    2013-01-01

    Phosphorus (P) is an important pollutant of concern in wastewater that causes eutrophication and algal blooms in water body. On the other hand, P is a valuable natural resource for agricultural and industrial use. With the rapid depletion of mineral phosphorus on earth, there is a need to recover phosphorus from wastewater. In this study, a new chemical and biological process facilitated with iron dosing has been developed for P removal and recovery during wastewater treatment. The system con...

  8. Intended process water management concept for the mechanical biological treatment of municipal solid waste

    OpenAIRE

    D. Weichgrebe; S. Maerker; T. Böning; H. Stegemann

    2008-01-01

    Accumulating operational experience in both aerobic and anaerobic mechanical biological waste treatment (MBT) makes it increasingly obvious that controlled water management would substantially reduce the cost of MBT and also enhance resource recovery of the organic and inorganic fraction. The MBT plant at Gescher, Germany, is used as an example in order to determine the quantity and composition of process water and leachates from intensive and subsequent rotting, pressing water from anaerobic...

  9. 'TISUCROMA': A Software for Color Processing of Biological Tissue's Images

    International Nuclear Information System (INIS)

    In this work a software intended to plot and analyze digital image RGB histograms from normal and abnormal regions of biological tissue. The obtained RGB histograms from each zone can be used to show the image in only one color or the mixture of some of them. The Software was developed in Lab View to process the images in a laptop. Some medical application examples are shown. (Author)

  10. Biological Networks Underlying Abiotic Stress Tolerance in Temperate Crops—A Proteomic Perspective

    Directory of Open Access Journals (Sweden)

    Klára Kosová

    2015-09-01

    Full Text Available Abiotic stress factors, especially low temperatures, drought, and salinity, represent the major constraints limiting agricultural production in temperate climate. Under the conditions of global climate change, the risk of damaging effects of abiotic stresses on crop production increases. Plant stress response represents an active process aimed at an establishment of novel homeostasis under altered environmental conditions. Proteins play a crucial role in plant stress response since they are directly involved in shaping the final phenotype. In the review, results of proteomic studies focused on stress response of major crops grown in temperate climate including cereals: common wheat (Triticum aestivum, durum wheat (Triticum durum, barley (Hordeum vulgare, maize (Zea mays; leguminous plants: alfalfa (Medicago sativa, soybean (Glycine max, common bean (Phaseolus vulgaris, pea (Pisum sativum; oilseed rape (Brassica napus; potato (Solanum tuberosum; tobacco (Nicotiana tabaccum; tomato (Lycopersicon esculentum; and others, to a wide range of abiotic stresses (cold, drought, salinity, heat, imbalances in mineral nutrition and heavy metals are summarized. The dynamics of changes in various protein functional groups including signaling and regulatory proteins, transcription factors, proteins involved in protein metabolism, amino acid metabolism, metabolism of several stress-related compounds, proteins with chaperone and protective functions as well as structural proteins (cell wall components, cytoskeleton are briefly overviewed. Attention is paid to the differences found between differentially tolerant genotypes. In addition, proteomic studies aimed at proteomic investigation of multiple stress factors are discussed. In conclusion, contribution of proteomic studies to understanding the complexity of crop response to abiotic stresses as well as possibilities to identify and utilize protein markers in crop breeding processes are discussed.

  11. Tissue-specific laser microdissection of the Brassica napus funiculus improves gene discovery and spatial identification of biological processes

    Science.gov (United States)

    Chan, Ainsley C.; Khan, Deirdre; Girard, Ian J.; Becker, Michael G.; Millar, Jenna L.; Sytnik, David; Belmonte, Mark F.

    2016-01-01

    The three primary tissue systems of the funiculus each undergo unique developmental programs to support the growth and development of the filial seed. To understand the underlying transcriptional mechanisms that orchestrate development of the funiculus at the globular embryonic stage of seed development, we used laser microdissection coupled with RNA-sequencing to produce a high-resolution dataset of the mRNAs present in the epidermis, cortex, and vasculature of the Brassica napus (canola) funiculus. We identified 7761 additional genes in these tissues compared with the whole funiculus organ alone using this technology. Differential expression and enrichment analyses were used to identify several biological processes associated with each tissue system. Our data show that cell wall modification and lipid metabolism are prominent in the epidermis, cell growth and modification occur in the cortex, and vascular tissue proliferation and differentiation occur in the central vascular strand. We provide further evidence that each of the three tissue systems of the globular stage funiculus are involved in specific biological processes that all co-ordinate to support seed development. The identification of genes and gene regulators responsible for tissue-specific developmental processes of the canola funiculus now serves as a valuable resource for seed improvement research. PMID:27194740

  12. Reduction of Biological Sludge Production Applying an Alternating Oxic/anoxic Process in Water Line.

    Science.gov (United States)

    Eusebi, Anna Laura; Panigutti, Maximiliano; Battistoni, Paolo

    2016-06-01

    Alternating oxic/anoxic process, applied for the main objective of the improvement of nitrogen performances, was studied in terms of secondary effect of biomass reduction. The process was carried out in one real water resource recovery facility and the data were compared with the previous conventional period when a conventional process was adopted. The main mechanism of the process for the sludge minimization is recognized in the metabolic uncoupling. In fact, an increase of the specific oxygen uptake rate in the biological reactor was recorded stimulated by the change of the oxidation reduction potential environment. Moreover, the heterotrophic growth yield was measured equal to 0.385 kgVSS/kgCOD. The global percentage of reduction was tested with the mass balance of solids. The process is able to decrease the observed sludge yield up to 20%. The specific energy consumption was evaluated. PMID:27225780

  13. ADAPT: building conceptual models of the physical and biological processes across permafrost landscapes

    Science.gov (United States)

    Allard, M.; Vincent, W. F.; Lemay, M.

    2012-12-01

    Fundamental and applied permafrost research is called upon in Canada in support of environmental protection, economic development and for contributing to the international efforts in understanding climatic and ecological feedbacks of permafrost thawing under a warming climate. The five year "Arctic Development and Adaptation to Permafrost in Transition" program (ADAPT) funded by NSERC brings together 14 scientists from 10 Canadian universities and involves numerous collaborators from academia, territorial and provincial governments, Inuit communities and industry. The geographical coverage of the program encompasses all of the permafrost regions of Canada. Field research at a series of sites across the country is being coordinated. A common protocol for measuring ground thermal and moisture regime, characterizing terrain conditions (vegetation, topography, surface water regime and soil organic matter contents) is being applied in order to provide inputs for designing a general model to provide an understanding of transfers of energy and matter in permafrost terrain, and the implications for biological and human systems. The ADAPT mission is to produce an 'Integrated Permafrost Systems Science' framework that will be used to help generate sustainable development and adaptation strategies for the North in the context of rapid socio-economic and climate change. ADAPT has three major objectives: to examine how changing precipitation and warming temperatures affect permafrost geosystems and ecosystems, specifically by testing hypotheses concerning the influence of the snowpack, the effects of water as a conveyor of heat, sediments, and carbon in warming permafrost terrain and the processes of permafrost decay; to interact directly with Inuit communities, the public sector and the private sector for development and adaptation to changes in permafrost environments; and to train the new generation of experts and scientists in this critical domain of research in Canada

  14. Starch hydrolysis under low water conditions: a conceptual process design

    NARCIS (Netherlands)

    Veen, van der M.E.; Veelaert, S.; Goot, van der A.J.; Boom, R.M.

    2006-01-01

    A process concept is presented for the hydrolysis of starch to glucose in highly concentrated systems. Depending on the moisture content, the process consists of two or three stages. The two-stage process comprises combined thermal and enzymatic liquefaction, followed by enzymatic saccharification.

  15. Wastewater resource recovery via the Enhanced Biological Phosphorus Removal and Recovery (EBP2R) process coupled with green microalgae cultivation

    DEFF Research Database (Denmark)

    Valverde Perez, Borja

    completely counters the benefit of resource recovery. As an alternative, this thesis proposes a new fully biochemical resource recovery process, referred to as TRENS. The TRENS consists of an enhanced biological phosphorus removal and recovery (EBP2R) process combined with a photobioreactor (PBR). The EBP2R...... was reduced to sulphur reduced compounds, such as sulphide, by sulphate reducing bacteria (SRBs). Phosphorus removal was poor during the filamentous bulking event, which was a consequence of the interactions between SRBs and PAOs in the anaerobic phase. SRBs can compete with PAOs for volatile fatty acids...... under anaerobic conditions. Additionally, sulphide can inhibit phosphorus release by PAOs. As a result, PAOs were washed out from the systems. Filamentous bulking was mitigated and phosphorus removal was restored by reducing the anaerobic SRT of the SBR. However, this strategy failed when applied...

  16. Biological processes in the water column of the South Atlantic Bight: Phytoplankton response. Final progress report

    Energy Technology Data Exchange (ETDEWEB)

    Verity, P.G.; Yoder, J.A.

    1992-03-10

    This study addressed shelf-wide processes and nearshore (coastal boundary zone) processes occurring in the southeastern. Coastal boundary zone (CBZ) US continental shelf dynamics involve studies of circulation and of biological and chemical transformations. Continental shelf processes affect the removal of material from the coastal boundary zone into areas where the material no longer interacts with or influences concentrations in the CBZ. The two arbitrarily separate components are, in fact, unified. The CBZ typically extends about 300 km along-shore and about 20 km offshore from its center off Savannah, Georgia, where most runoff occurs. The rates of biological and chemical transformations are controlled by proximity to the bottom and the amounts of fine suspended organic matter originating from rivers and salt marshes. Once material is removed from this zone, either by a long-shelf or cross-shelf advection to regions where the materials are no longer in contact with the bottom, the suite of factors governing the rates of chemical and biological transformations changes. The determination of contrasting rates in these two environments was one of the central focuses of the South Atlantic Bight program.

  17. Males Under-Estimate Academic Performance of Their Female Peers in Undergraduate Biology Classrooms

    OpenAIRE

    Grunspan, Daniel Z.; Eddy, Sarah L.; Brownell, Sara E.; Benjamin L Wiggins; Crowe, Alison J.; Goodreau, Steven M

    2016-01-01

    Women who start college in one of the natural or physical sciences leave in greater proportions than their male peers. The reasons for this difference are complex, and one possible contributing factor is the social environment women experience in the classroom. Using social network analysis, we explore how gender influences the confidence that college-level biology students have in each other's mastery of biology. Results reveal that males are more likely than females to be named by peers as ...

  18. Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication.

    Science.gov (United States)

    Montague, Michael J; Li, Gang; Gandolfi, Barbara; Khan, Razib; Aken, Bronwen L; Searle, Steven M J; Minx, Patrick; Hillier, LaDeana W; Koboldt, Daniel C; Davis, Brian W; Driscoll, Carlos A; Barr, Christina S; Blackistone, Kevin; Quilez, Javier; Lorente-Galdos, Belen; Marques-Bonet, Tomas; Alkan, Can; Thomas, Gregg W C; Hahn, Matthew W; Menotti-Raymond, Marilyn; O'Brien, Stephen J; Wilson, Richard K; Lyons, Leslie A; Murphy, William J; Warren, Wesley C

    2014-12-01

    Little is known about the genetic changes that distinguish domestic cat populations from their wild progenitors. Here we describe a high-quality domestic cat reference genome assembly and comparative inferences made with other cat breeds, wildcats, and other mammals. Based upon these comparisons, we identified positively selected genes enriched for genes involved in lipid metabolism that underpin adaptations to a hypercarnivorous diet. We also found positive selection signals within genes underlying sensory processes, especially those affecting vision and hearing in the carnivore lineage. We observed an evolutionary tradeoff between functional olfactory and vomeronasal receptor gene repertoires in the cat and dog genomes, with an expansion of the feline chemosensory system for detecting pheromones at the expense of odorant detection. Genomic regions harboring signatures of natural selection that distinguish domestic cats from their wild congeners are enriched in neural crest-related genes associated with behavior and reward in mouse models, as predicted by the domestication syndrome hypothesis. Our description of a previously unidentified allele for the gloving pigmentation pattern found in the Birman breed supports the hypothesis that cat breeds experienced strong selection on specific mutations drawn from random bred populations. Collectively, these findings provide insight into how the process of domestication altered the ancestral wildcat genome and build a resource for future disease mapping and phylogenomic studies across all members of the Felidae. PMID:25385592

  19. Effectiveness of biological geotextiles in reducing runoff and soil loss under different environmental conditions using laboratory and field plot data

    Science.gov (United States)

    Smets, T.

    2009-04-01

    Preliminary investigations suggest biological geotextiles could be an effective and inexpensive soil conservation method, with enormous global potential. Biological geotextiles are a possible temporary alternative for vegetation cover and can offer immediate soil protection. However, limited data are available on the erosion-reducing effects of biological geotextiles. Therefore, the objective of this study is to evaluate the effectiveness of selected types of biological geotextile in reducing runoff and soil loss under controlled laboratory conditions and under field conditions reflecting different environments (i.e. continental, temperate and tropical). In laboratory experiments, interrill runoff, interrill erosion and concentrated flow erosion were simulated using various rainfall intensities, flow shear stresses and slope gradients. Field plot data on the effects of biological geotextiles on sheet and rill erosion were collected in several countries under natural rainfall (U.K., Hungary, Lithuania, South Africa, Brazil, China and Thailand). The laboratory experiments indicate that all tested biological geotextiles were effective in reducing interrill runoff (on average 59% of the value for bare soil) and interrill erosion rates (on average 16% of the value for bare soil). Since simulated concentrated flow discharge sometimes flowed below the geotextiles, the effectiveness in reducing concentrated flow erosion was significantly less (on average 59% of the value for bare soil). On field plots, where both interrill and rill erosion occur, all tested geotextiles reduced runoff depth by a mean of 54% of the control value for bare soil and in some cases, runoff depth increased compared to bare soil surfaces, which can be attributed to the impermeable and hydrophobic characteristics of some biological geotextiles. In the field, soil loss rates due to interrill and rill erosion were reduced by a mean of 21% of the value of bare soil by biological geotextiles. This study

  20. Combined processes of two-stage Fenton-biological anaerobic filter-biological aerated filter for advanced treatment of landfill leachate.

    Science.gov (United States)

    Wang, Xiaojun; Han, Jijun; Chen, Zhiwei; Jian, Lei; Gu, Xiaoyang; Lin, Che-Jen

    2012-12-01

    There are numerous non-biodegradable organic materials in the mature landfill leachate. To meet the new discharge standard of China, additional advanced treatment is needed for the effluent from the biological treatment processes of leachate. In this study, a combined process including two stages of "Fenton-biological anaerobic filter (BANF)-biological aerated filter (BAF)" was evaluated to address the advanced treatment need. The Fenton oxidation was applied to reduce chemical oxygen demand (COD) and enhance biodegradability of refractory organics, and the BANF-BAF process was then applied to remove the total nitrogen (TN). The treatment achieved effluent concentrations of CODcost of these processes was about 36.1CHY/t (5.70USD/t). PMID:22841597

  1. Some problems of biological effects under the combined action of nitrogen oxides, their metabolites and radiation

    International Nuclear Information System (INIS)

    The progress of power engineering envisages the intensive construction of nuclear-energy plants, where an organic or nuclear fuel is used. Nowadays the concept of nuclear-energy plant with the coolant based on dissociating N2O4 is being developed. A great deal of radioactive and chemical products escapes into surroundings as the result of the power plants being in service. Their action on organisms is performed simultaneously, that could have an essential effect on the quantitative and qualitative regularities of response. The estimation of the combined effect of nitrogen oxides, sodium nitrite and nitrate and radiation has been carried out on the base of the investigation into methemoglobin formation, genetic effects and the pathomorphological changes in lungs. The formation of methemoglobin has been studied on rats in 1, 3, 7 and 15 days after the single total irradiation of 300 and 700 R doses at the gamma-installation (UGU-420) using a radioactive 60Co. Methemoglobin was determined in the interval of 15-180 min after NaNO2 administration in the dosage of 7.0 mg per 100 g body weight. The irradiation essentially affects the process of methemoglobin formation and its reduction. The methemoglobin content in the blood of radiation exposed animals exceeds the value, that could be expected to obtain by summing up its concentration under the separate effects of nitrite and irradiation. The genetic effects of sodium nitrite and nitrate and X-radiation have been studied on the Drosophila. The one-day flies were exposed to the radiation dose of 1500 R in the medium with the sodium nitrite or nitrate contents of 0.1 or 1.0 g/l, respectively. The combined action estimated through the frequency of the dominant lethal mutation, recessive coupled with a lethal mutation sex, viability and fecundity definitely differs from the expected summing values of the separate effect indices of radiation and toxic factors. The morpho- and functional changes in the rat lungs (the

  2. Preliminary degradation process study of infectious biological waste in a 5 k W thermal plasma equipment

    International Nuclear Information System (INIS)

    This work is a preliminary study of infectious biological waste degradation process by thermal plasma and was made in Thermal Plasma Applications Laboratory of Environmental Studies Department of the National Institute of Nuclear Research (ININ). Infectious biological waste degradation process is realized by using samples such polyethylene, cotton, glass, etc., but the present study scope is to analyze polyethylene degradation process with mass and energy balances involved. Degradation method is realized as follow: a polyethylene sample is put in an appropriated crucible localized inside a pyrolysis reactor chamber, the plasma jet is projected to the sample, by the pyrolysis phenomena the sample is degraded into its constitutive particles: carbon and hydrogen. Air was utilized as a recombination gas in order to obtain the higher percent of CO2 if amount of O2 is greater in the recombination gas, the CO generation is reduced. The effluent gases of exhaust pyrolysis reactor through are passed through a heat exchanger to get cooled gases, the temperature water used is 15 Centigrade degrees. Finally the gases was tried into absorption tower with water as an absorbent fluid. Thermal plasma degradation process is a very promising technology, but is necessary to develop engineering process area to avail all advantages of thermal plasma. (Author)

  3. Reclaimation of petroleum-based wastewater by noval ozone immobilized biological activated carbon process

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Wastewater reclamation in the petroleum industries in Northern China is important because of the shortage of water resource. Conventional treatment technology used in treating petroleum-based wastewater,namely the 3-phase biological process, typically removes COD, BOD, grease, volatile hydrobenzenes, cyanides, sulfides and suspended solids. However, the process is often ineffective in ammonia-nitrogen removal,and thus the treated effluent quantity can't meet the required standards for reuse. This paper investigated a novel ozone immobilized biological activated carbon (O3-IBAC) process for ammonia nitrogen removal from petroleum-based wastewater. Operated at a HRT (Hydraulic Retention Time) of 15 minutes in IBAC1 and 27 minutes in IBAC2, the O3-IBAC process achieved ammonia nitrogen removal efficiency of 91%. In addition, the removal efficiencies of COD, volatile hydrobenzenes, suspended solids, turbidity and petroleum-based micropollutants were all above 90%. Competition between the autotrophs and heterotrophs was observed, which was indicated by an increase of ammonia nitrogen removal with a decrease of COD removal, and vise versa. Nitrite accumulation in IBAC1 followed by erobic shortcut denitrification in IBAC2 led to 28% of the Total Nitrogen removal efficiency. Pollutant reduction in the IBAC process was achieved by a rapid physical adsorption and biodegradation on the activated carbon, which effectively retained the pollutants in the system despite the short hydraulic retention time.

  4. Physics and chemistry of minerals under laser processing

    Science.gov (United States)

    Kotova, O.; Leonenko, N.

    2016-04-01

    New experimental data of the influence of laser irradiation on the phase composition minerals of bauxite and red mud and their technological features have been represented. The mechanisms of formation of micro- and nanophases on mineral surfaces under the influence of laser irradiation were shown. It is underlined that changes of condition of surface atoms, concentration of metals, agglomeration of titanium minerals and new phase formation occurred under laser irradiation on bauxites and red mud.

  5. Blurred Star Image Processing for Star Sensors under Dynamic Conditions

    OpenAIRE

    Lei Guo; Weina Zhang; Wei Quan

    2012-01-01

    The precision of star point location is significant to identify the star map and to acquire the aircraft attitude for star sensors. Under dynamic conditions, star images are not only corrupted by various noises, but also blurred due to the angular rate of the star sensor. According to different angular rates under dynamic conditions, a novel method is proposed in this article, which includes a denoising method based on adaptive wavelet threshold and a restoration method based on the large ang...

  6. Biological and geochemical processes involved during denitrification in Callovo-Oxfordian clay

    International Nuclear Information System (INIS)

    Document available in extended abstract form only. The clay-rich Callovo-Oxfordian (COx) formation has been selected for the disposal of medium and high level, long-lived radioactive waste. After waste cell closure and degradation of package some intermediate-level waste will release nitrate. The latter is likely to diffuse into the surrounding environment (engineered barriers and geological host formation) and interact with a variety compounds present in the barrier components and the rocks. These interactions may result in modification of chemical conditions and impact storage conditions and radionuclide retention. Our work is focused on the understanding of the fate of nitrates released during and after degradation of waste package. We developed a coupled approach considering both geochemical and biological processes of nitrate reduction to simulate reactions occurring at the interface of the engineered barrier and the clay-rich COx formation. Laboratory experiments have been carried out in order to acquire data on kinetics of denitrification coupled with a molecular approach using enzymatic and metabolic activities as a tool for an accurate estimation of biomass. Denitrification has been monitored in a synthetic solution comparable to COx pore water supplemented with acetate and nitrate and amended with a heterotrophic denitrifying strain, Pseudomonas mandelii. Several conditions are applied considering different acetate/nitrate ratios in the presence or absence of COx clay. Before the beginning of experiments, the headspace is flushed with N2 gas to remove oxygen from flasks. Acetylene is used to stop denitrification reaction after the production of N2O gas and thus avoid the formation of N2 gas. Two successive redox reactions are thus expected to occur in experiments. Samples are regularly collected to analyze physical and chemical parameters as well as biological parameters. Biomass is estimated and monitored using both optical microscopy and quantitative

  7. Biodrying for mechanical-biological treatment of wastes: a review of process science and engineering.

    Science.gov (United States)

    Velis, C A; Longhurst, P J; Drew, G H; Smith, R; Pollard, S J T

    2009-06-01

    Biodrying is a variation of aerobic decomposition, used within mechanical-biological treatment (MBT) plants to dry and partially stabilise residual municipal waste. Biodrying MBT plants can produce a high quality solid recovered fuel (SRF), high in biomass content. Here, process objectives, operating principles, reactor designs, parameters for process monitoring and control, and their effect on biodried output quality are critically examined. Within the biodrying reactors, waste is dried by air convection, the necessary heat provided by exothermic decomposition of the readily decomposable waste fraction. Biodrying is distinct from composting in attempting to dry and preserve most of biomass content of the waste matrix, rather than fully stabilise it. Commercial process cycles are completed within 7-15 days, with mostly H(2)O((g)) and CO(2) loses of ca. 25-30% w/w, leading to moisture contents of MBT process operators, regulators and end-users of SRF. PMID:19216072

  8. Monitoring and characterization of yeasts behavior under fermentation processes using technometric approaches

    OpenAIRE

    Castro, Cristiana C.

    2013-01-01

    Tese de doutoramento em Chemical and Biological Engineering Technometrics concerns on the development and use of statistical methods in different fields, such as biotechnological processes, in order to understand their multivariate and multidimensional complexity. Chemical changes occurring within these processes can be monitored using chemometric tools that combined with bioinformatic methodologies, can provide an enlarged overview of the process, enabling the unbiased study ...

  9. Metastability in reversible diffusion processes invariant under a symmetry group

    OpenAIRE

    Dutercq, Sébastien

    2016-01-01

    We extend the analysis of the problem of metastability of Markovian jump processes with symmetries, initiated in a previous work, to reversible diffusion processes. Using representation theory of finite groups, we prove an Eyring-Kramers law for the low-lying spectrum of the generator of the diffusion, thereby generalizing results by A. Bovier, V. Gayrard, and M. Klein.

  10. The role of biological processes in the synthesis of plant origin of magnetic nano particles

    International Nuclear Information System (INIS)

    Full text:In recent years, in various spheres, particular in the use of medicine and the use of iron oxide (magnetit-Fe3O4, magemit Fe2O3) needed in the diagnostics the problems of synthesis of magnetic nano particles are in the centre of the focus of many scholars.The implementation of biological methods of synthesis of magnetic nano particles, it is very urgent clarification of the role of biological processes synthesis of nano particles. What is the role of biological processes in the synthesis of magnetic nano particles plant in order to clarify the model of the wheat (Triticum vulgare) and pea (Cicer arietinum L.) plants and seeds have been used. The study of the effects of radiation on organisms of different types of cell and chromosome levels of various radiation effects and radiation to understand the nature of the influence of the nature of the forecast allows you to substantiate. Chromosome aberation was has been taken in the cells of pea sprout exposures radiation rays as a criterion of cytogenetic effects. EPR studies of the pea and wheat seeds (control and radiations) were used. In accordance with the results of EPR experiments were carried out with pea seeds.

  11. Development of process energy intensity formula under different state variables

    Institute of Scientific and Technical Information of China (English)

    陈光

    2004-01-01

    In a production process, the actual energy consumption is greatly affected by the production state.Certain processing operations are classified into six states, including normal production, abnormal production,planned overhaul, unplanned overhaul, transitional period from unplanned overhaul to normal production (referred for short as unplanned transition) and transitional period from planned overhaul to normal production (referred for short as planned transition). The article takes the analysis of relationship between different states of a certain processing operation and corresponding energy consumptions as a startup point to develop a process energy intensity formula with variables of operating rate, yielding rate and operating frequency, etc. This process energy intensity formula can be used to analyze effectively the pattern of impact exerted by different state variables on energy consumption.

  12. Assessing the Soil Physiological Potential Using Pedo-Biological Diagnosis Under Minimum-Tillage System and Mineral Fertilization

    Directory of Open Access Journals (Sweden)

    Lazar Bireescu

    2014-11-01

    Full Text Available The main objective of sustainable agriculture is the protection of environment and natural vegetal and soil resources. Accordingly, the objective of this research was to assess the impact of technological systems by minimum tillage on soil biological activity, using the Pedo-Biological Diagnosis of Soil Resources. Our research was conducted on haplic chernozem from Experimental Station of UASVM of Iasi, Romania, during the seasonal dynamic, to the soybean crop, on unfertilized and fertilized agrofond, using moderate mineral doses (N80P80 as average of 2009–2010 period, under minimum tillage (2x disk, paraplow, chisel compared to conventional (plugging at 20 cm and 30 cm. In the case of soil works with chisel and paraplow without return of furrow, the Pedo-Biological Diagnosis highlights an increase of soil physiological potential, in the both variants (unfertilized and fertilized, unlike the method of alternating the depth of plugging that proved to be ineffective.

  13. Standards, Data Exchange and Intellectual Property Rights in Systems Biology (UNDER REVIEW)

    DEFF Research Database (Denmark)

    van Zimmeren, Esther; Rutz, Berthold; Minssen, Timo

    2016-01-01

    scientists. In 2015, Biotechnology Journal published a report from an expert meeting on “Synthetic Biology & Intellectual Property Rights” organized by the Danish Agency for Science, Technology and Innovation sponsored by the European Research Area Network in Synthetic Biology (ERASynBio), in which we...... provided a number of recommendations for a variety of stakeholders. The current article offers some deeper reflections about IPRs in Systems Biology (SysBio) resulting from an Expert Meeting funded by another European Research Area Network, ERASysAPP. SysBio involves the interdisciplinary study of...... SysBio and IPRs. This article reflects on a number of particularly relevant issues that were discussed at the meeting and offers some first recommendations....

  14. The relative contributions of biological and abiotic processes to carbon dynamics in subarctic sea ice

    DEFF Research Database (Denmark)

    Søgaard, Dorte Haubjerg; Thomas, David; Rysgaard, Søren;

    2013-01-01

    and CaCO3 precipitation. The net biological production could only explain 4 % of this sea-ice-driven CO2 uptake. Abiotic processes contributed to an air-sea CO2 uptake of 1.5 mmol m(-2) sea ice day(-1), and dissolution of CaCO3 increased the air-sea CO2 uptake by 36 % compared to a theoretical estimate......Knowledge on the relative effects of biological activity and precipitation/dissolution of calcium carbonate (CaCO3) in influencing the air-ice CO2 exchange in sea-ice-covered season is currently lacking. Furthermore, the spatial and temporal occurrence of CaCO3 and other biogeochemical parameters...

  15. State of the art of biological processes for coal gasification wastewater treatment.

    Science.gov (United States)

    Zhao, Qian; Liu, Yu

    2016-01-01

    The treatment of coal gasification wastewater (CGW) poses a serious challenge on the sustainable development of the global coal industry. The CGW contains a broad spectrum of high-strength recalcitrant substances, including phenolic, monocyclic and polycyclic aromatic hydrocarbons, heterocyclic nitrogenous compounds and long chain aliphatic hydrocarbon. So far, biological treatment of CGW has been considered as an environment-friendly and cost-effective method compared to physiochemical approaches. Thus, this reviews aims to provide a comprehensive picture of state of the art of biological processes for treating CGW wastewater, while the possible biodegradation mechanisms of toxic and refractory organic substances were also elaborated together with microbial community involved. Discussion was further extended to advanced bioprocesses to tackle high-concentration ammonia and possible options towards in-plant zero liquid discharge. PMID:27364381

  16. Biological armors under impact—effect of keratin coating, and synthetic bio-inspired analogues

    International Nuclear Information System (INIS)

    A number of biological armors, such as turtle shells, consist of a strong exoskeleton covered with a thin keratin coating. The mechanical role upon impact of this keratin coating has surprisingly not been investigated thus far. Low-velocity impact tests on the turtle shell reveal a unique toughening phenomenon attributed to the thin covering keratin layer, the presence of which noticeably improves the fracture energy and shell integrity. Synthetic substrate/coating analogues were subsequently prepared and exhibit an impact behavior similar to the biological ones. The results of the present study may improve our understanding, and even future designs, of impact-tolerant structures. (paper)

  17. The Distribution of Family Sizes Under a Time-Homogeneous Birth and Death Process.

    Science.gov (United States)

    Moschopoulos, Panagis; Shpak, Max

    2010-05-11

    The number of extant individuals within a lineage, as exemplified by counts of species numbers across genera in a higher taxonomic category, is known to be a highly skewed distribution. Because the sublineages (such as genera in a clade) themselves follow a random birth process, deriving the distribution of lineage sizes involves averaging the solutions to a birth and death process over the distribution of time intervals separating the origin of the lineages. In this article, we show that the resulting distributions can be represented by hypergeometric functions of the second kind. We also provide approximations of these distributions up to the second order, and compare these results to the asymptotic distributions and numerical approximations used in previous studies. For two limiting cases, one with a relatively high rate of lineage origin, one with a low rate, the cumulative probability densities and percentiles are compared to show that the approximations are robust over a wide range of parameters. It is proposed that the probability distributions of lineage size may have a number of relevant applications to biological problems such as the coalescence of genetic lineages and in predicting the number of species in living and extinct higher taxa, as these systems are special instances of the underlying process analyzed in this article. PMID:23543815

  18. Electrochemical advanced oxidation and biological processes for wastewater treatment: a review of the combined approaches.

    Science.gov (United States)

    Ganzenko, Oleksandra; Huguenot, David; van Hullebusch, Eric D; Esposito, Giovanni; Oturan, Mehmet A

    2014-01-01

    As pollution becomes one of the biggest environmental challenges of the twenty-first century, pollution of water threatens the very existence of humanity, making immediate action a priority. The most persistent and hazardous pollutants come from industrial and agricultural activities; therefore, effective treatment of this wastewater prior to discharge into the natural environment is the solution. Advanced oxidation processes (AOPs) have caused increased interest due to their ability to degrade hazardous substances in contrast to other methods, which mainly only transfer pollution from wastewater to sludge, a membrane filter, or an adsorbent. Among a great variety of different AOPs, a group of electrochemical advanced oxidation processes (EAOPs), including electro-Fenton, is emerging as an environmental-friendly and effective treatment process for the destruction of persistent hazardous contaminants. The only concern that slows down a large-scale implementation is energy consumption and related investment and operational costs. A combination of EAOPs with biological treatment is an interesting solution. In such a synergetic way, removal efficiency is maximized, while minimizing operational costs. The goal of this review is to present cutting-edge research for treatment of three common and problematic pollutants and effluents: dyes and textile wastewater, olive processing wastewater, and pharmaceuticals and hospital wastewater. Each of these types is regarded in terms of recent scientific research on individual electrochemical, individual biological and a combined synergetic treatment. PMID:24965093

  19. Failure Processes in Embedded Monolayer Graphene under Axial Compression

    OpenAIRE

    Androulidakis, Charalampos; Koukaras, Emmanuel N.; Frank, Otakar; Tsoukleri, Georgia; Sfyris, Dimitris; Parthenios, John; Pugno, Nicola; Papagelis, Konstantinos; Novoselov, Kostya S.; Galiotis, Costas

    2014-01-01

    Exfoliated monolayer graphene flakes were embedded in a polymer matrix and loaded under axial compression. By monitoring the shifts of the 2D Raman phonons of rectangular flakes of various sizes under load, the critical strain to failure was determined. Prior to loading care was taken for the examined area of the flake to be free of residual stresses. The critical strain values for first failure were found to be independent of flake size at a mean value of –0.60% corresponding to a yield stre...

  20. Is biological treatment a viable alternative for micropollutant removal in drinking water treatment processes?

    Science.gov (United States)

    Benner, Jessica; Helbling, Damian E; Kohler, Hans-Peter E; Wittebol, Janneke; Kaiser, Elena; Prasse, Carsten; Ternes, Thomas A; Albers, Christian N; Aamand, Jens; Horemans, Benjamin; Springael, Dirk; Walravens, Eddy; Boon, Nico

    2013-10-15

    In western societies, clean and safe drinking water is often taken for granted, but there are threats to drinking water resources that should not be underestimated. Contamination of drinking water sources by anthropogenic chemicals is one threat that is particularly widespread in industrialized nations. Recently, a significant amount of attention has been given to the occurrence of micropollutants in the urban water cycle. Micropollutants are bioactive and/or persistent chemicals originating from diverse sources that are frequently detected in water resources in the pg/L to μg/L range. The aim of this review is to critically evaluate the viability of biological treatment processes as a means to remove micropollutants from drinking water resources. We first place the micropollutant problem in context by providing a comprehensive summary of the reported occurrence of micropollutants in raw water used directly for drinking water production and in finished drinking water. We then present a critical discussion on conventional and advanced drinking water treatment processes and their contribution to micropollutant removal. Finally, we propose biological treatment and bioaugmentation as a potential targeted, cost-effective, and sustainable alternative to existing processes while critically examining the technical limitations and scientific challenges that need to be addressed prior to implementation. This review will serve as a valuable source of data and literature for water utilities, water researchers, policy makers, and environmental consultants. Meanwhile this review will open the door to meaningful discussion on the feasibility and application of biological treatment and bioaugmentation in drinking water treatment processes to protect the public from exposure to micropollutants. PMID:24053940

  1. Kinetic analysis of enhanced biological phosphorus removal in a hybrid integrated fixed film activated sludge process

    International Nuclear Information System (INIS)

    Hybrid integrated fixed film activated sludge is a promising process for the enhancement of nitrification, denitrification and phosphorus removal in conventional activated sludge systems that can be used for upgrading biological nutrient removal, particularly when they have space limitations or need modifications that will require large monetary expenses. In this research, successful implementation of hybrid integrated fixed film activated sludge process at temperate zone wastewater treatment facilities has been studied by the placement of fixed film media into aerobic, anaerobic and anoxic zones. The primary objective of this study was to investigate the incorporation of enhanced biological phosphorus removal into hybrid integrated fixed film activated sludge systems and study the interactions between the fixed biomass and the mixed liquor suspended solids with respect to substrate competition and nutrient removal efficiencies. A pilot-scale anaerobic-anoxic-oxic configuration system was used. The system was operated at different mean cell residence times and influent chemical oxygen demand/total phosphorus ratios and with split influent flows. The experimental results confirmed that enhanced biological phosphorus removal could be incorporated successfully into hybrid integrated fixed film activated sludge system, but the redistribution of biomass resulting from the integration of fixed film media and the competition of organic substrate between enhanced biological phosphorus removal and denitrification would affect performances. Also, kinetic analysis of the reactor with regarding to phosphorus removal has been studied with different kinetic models and consequently the modified Stover-Kincannon kinetic model has been chosen for modeling studies and experimental data analysis of the hybrid integrated fixed film activated sludge reactor

  2. Solar System Processes Underlying Planetary Formation, Geodynamics, and the Georeactor

    CERN Document Server

    Herndon, J M

    2006-01-01

    Only three processes, operant during the formation of the Solar System, are responsible for the diversity of matter in the Solar System and are directly responsible for planetary internal-structures, including planetocentric nuclear fission reactors, and for dynamical processes, including and especially, geodynamics. These processes are: (i) Low-pressure, low-temperature condensation from solar matter in the remote reaches of the Solar System or in the interstellar medium; (ii) High-pressure, high-temperature condensation from solar matter associated with planetary-formation by raining out from the interiors of giant-gaseous protoplanets, and; (iii) Stripping of the primordial volatile components from the inner portion of the Solar System by super-intense solar wind associated with T-Tauri phase mass-ejections, presumably during the thermonuclear ignition of the Sun. As described herein, these processes lead logically, in a causally related manner, to a coherent vision of planetary formation with profound imp...

  3. Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations

    Directory of Open Access Journals (Sweden)

    Kleessen Sabrina

    2012-03-01

    Full Text Available Abstract Background Flux balance analysis (FBA together with its extension, dynamic FBA, have proven instrumental for analyzing the robustness and dynamics of metabolic networks by employing only the stoichiometry of the included reactions coupled with adequately chosen objective function. In addition, under the assumption of minimization of metabolic adjustment, dynamic FBA has recently been employed to analyze the transition between metabolic states. Results Here, we propose a suite of novel methods for analyzing the dynamics of (internally perturbed metabolic networks and for quantifying their robustness with limited knowledge of kinetic parameters. Following the biochemically meaningful premise that metabolite concentrations exhibit smooth temporal changes, the proposed methods rely on minimizing the significant fluctuations of metabolic profiles to predict the time-resolved metabolic state, characterized by both fluxes and concentrations. By conducting a comparative analysis with a kinetic model of the Calvin-Benson cycle and a model of plant carbohydrate metabolism, we demonstrate that the principle of regulatory on/off minimization coupled with dynamic FBA can accurately predict the changes in metabolic states. Conclusions Our methods outperform the existing dynamic FBA-based modeling alternatives, and could help in revealing the mechanisms for maintaining robustness of dynamic processes in metabolic networks over time.

  4. THEMIS: Fairness in Federated Stream Processing under Overload

    OpenAIRE

    Kalyvianaki, E.; Fiscato, M.; Salonidis, T.; Pietzuch, P.

    2016-01-01

    Federated stream processing systems, which utilise nodes from multiple independent domains, can be found increasingly in multi-provider cloud deployments, internet-of-things systems, collaborative sensing applications and large-scale grid systems. To pool resources from several sites and take advantage of local processing, submitted queries are split into query fragments, which are executed collaboratively by different sites. When supporting many concurrent users, however, queries may exhaust...

  5. Stochastic processes in nuclear reactors under parametric excitation

    International Nuclear Information System (INIS)

    The statistical properties of a neutron field subject to parametric excitations are analyzed. The goal is to determine under what conditions noise techniques, developed for steady state systems, can be applied to measure properties of systems that are changing in time

  6. Elevated temperature altered photosynthetic products in wheat seedlings and organic compounds and biological activity in rhizopshere soil under cadmium stress

    Science.gov (United States)

    Jia, Xia; Zhao, Yonghua; Wang, Wenke; He, Yunhua

    2015-09-01

    The objective of this study was to investigate the effects of slightly elevated atmospheric temperature in the spring on photosynthetic products in wheat seedlings and on organic compounds and biological activity in rhizosphere soil under cadmium (Cd) stress. Elevated temperature was associated with increased soluble sugars, reducing sugars, starch, and total sugars, and with decreased amino acids in wheat seedlings under Cd stress. Elevated temperature improved total soluble sugars, free amino acids, soluble phenolic acids, and organic acids in rhizosphere soil under Cd stress. The activity of amylase, phenol oxidase, invertase, β-glucosidase, and L-asparaginase in rhizosphere soil was significantly improved by elevated temperature under Cd stress; while cellulase, neutral phosphatase, and urease activity significantly decreased. Elevated temperature significantly improved bacteria, fungi, actinomycetes, and total microorganisms abundance and fluorescein diacetate activity under Cd stress. In conclusion, slightly elevated atmospheric temperature in the spring improved the carbohydrate levels in wheat seedlings and organic compounds and biological activity in rhizosphere soil under Cd stress in the short term. In addition, elevated atmospheric temperature in the spring stimulated available Cd by affecting pH, DOC, phenolic acids, and organic acids in rhizosphere soil, which resulted in the improvement of the Cd uptake by wheat seedlings.

  7. Inhibition of a biological sulfide oxidation under haloalkaline conditions by thiols and diorgano polysulfanes

    NARCIS (Netherlands)

    Roman, Pawel; Lipińska, Joanna; Bijmans, Martijn F.M.; Sorokin, Dimitry Y.; Keesman, Karel J.; Janssen, Albert J.H.

    2016-01-01

    A novel approach has been developed for the simultaneous description of reaction kinetics to describe the formation of polysulfide and sulfate anions from the biological oxidation of hydrogen sulfide (H2S) using a quick, sulfide-dependent respiration test. Next to H2S, thiol

  8. Biologically Based Methods for Pest Management in Agriculture under Changing Climates: Challenges and Future Directions

    OpenAIRE

    Casper Nyamukondiwa; Frank Chidawanyika; Pride Mudavanhu

    2012-01-01

    The current changes in global climatic regimes present a significant societal challenge, affecting in all likelihood insect physiology, biochemistry, biogeography and population dynamics. With the increasing resistance of many insect pest species to chemical insecticides and an increasing organic food market, pest control strategies are slowly shifting towards more sustainable, ecologically sound and economically viable options. Biologically based pest management strategies present such oppor...

  9. Essential Concepts and Underlying Theories from Physics, Chemistry, and Mathematics for "Biochemistry and Molecular Biology" Majors

    Science.gov (United States)

    Wright, Ann; Provost, Joseph; Roecklein-Canfield, Jennifer A.; Bell, Ellis

    2013-01-01

    Over the past two years, through an NSF RCN UBE grant, the ASBMB has held regional workshops for faculty members from around the country. The workshops have focused on developing lists of Core Principles or Foundational Concepts in Biochemistry and Molecular Biology, a list of foundational skills, and foundational concepts from Physics, Chemistry,…

  10. Effect of Ferric Chloride on the Properties of Biological Sludge in Co-precipitation Phosphorus Removal Process

    Institute of Scientific and Technical Information of China (English)

    ZHANG Zhibin; LI Yi; WEI Leilei; L(U) Yufeng; WANG Meng; GAO Baoyu

    2013-01-01

    This paper studied the effect of ferric chloride on waste sludge digestion,dewatering and sedimentation under the optimized doses in co-precipitation phosphorus removal process.The experimental results showed that the concentration of mixed liquid suspended solid (MLSS) was 2436 mg·L-1 and 2385 mg·L-1 in co-precipitation phosphorus removal process (CPR) and biological phosphorous removal process (BPR),respectively.The sludge reduction ratio for each process was 22.6% and 24.6% in aerobic digestion,and 27.6% and 29.9% in anaerobic digestion,respectively.Due to the addition of chemical to the end of aeration tank,the sludge content of CPR was slightly higher than that of BPR,but the sludge reduction rate for both processes had no distinct difference.The sludge volume index (SVI) and sludge specific resistance of BPR were 126 ml·g-1 and 11.7×1012 m·kg-1,respectively,while those of CPR were only 98 ml·g-1 and 7.1×1012 m·kg-1,indicating that CPR chemical could improve sludge settling and dewatering.

  11. Intended process water management concept for the mechanical biological treatment of municipal solid waste

    Institute of Scientific and Technical Information of China (English)

    D. Weichgrebe; S. Maerker; T. Boning; H. Stegemann

    2008-01-01

    Accumulating operational experience in both aerobic and anaerobic mechanical biological waste treatment (MBT) makes it increasingly obvious that controlled water management would substantially reduce the cost of MBT and also enhance resource recovery of the organic and inorganic fraction. The MBT plant at Gescher, Germany, is used as an example in order to determine the quantity and composition of process water and leachates from intensive and subsequent rotting, pressing water from anaerobic digestion and scrubber water from acid exhaust air treatment, and hence prepare an MBT water balance. The potential of, requirements for and limits to internal process water reuse as well as the possibilities of resource recovery from scrubber water are also examined. Finally, an assimilated process water management concept with the purpose of an extensive reduction of wastewater quantity and freshwater demand is presented.

  12. Intended process water management concept for the mechanical biological treatment of municipal solid waste

    Directory of Open Access Journals (Sweden)

    D. Weichgrebe

    2008-03-01

    Full Text Available Accumulating operational experience in both aerobic and anaerobic mechanical biological waste treatment (MBT makes it increasingly obvious that controlled water management would substantially reduce the cost of MBT and also enhance resource recovery of the organic and inorganic fraction. The MBT plant at Gescher, Germany, is used as an example in order to determine the quantity and composition of process water and leachates from intensive and subsequent rotting, pressing water from anaerobic digestion and scrubber water from acid exhaust air treatment, and hence prepare an MBT water balance. The potential of, requirements for and limits to internal process water reuse as well as the possibilities of resource recovery from scrubber water are also examined. Finally, an assimilated process water management concept with the purpose of an extensive reduction of wastewater quantity and freshwater demand is presented.

  13. Proteomic dissection of biological pathways/processes through profiling protein-protein interaction networks

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    Cellular functions, either under the normal or pathological conditions or under different stresses, are the results of the coordinated action of multiple proteins interacting in macromolecular complexes or assemblies. The precise determination of the specific composition of protein complexes, especially using scalable and high-throughput methods, represents a systematic approach toward revealing particular cellular biological functions. In this regard, the direct profiling protein-protein interactions (PPIs) represent an efficient way to dissect functional pathways for revealing novel protein functions. In this review, we illustrate the technological evolution for the large-scale and precise identification of PPIs toward higher physiologically relevant accuracy. These techniques aim at improving the efficiency of complex pull-down, the signal specificity and accuracy in distinguishing specific PPIs, and the accuracy of identifying physiological relevant PPIs. A newly developed streamline proteomic approach for mapping the binary relationship of PPIs in a protein complex is introduced.

  14. Biological treatment process for removing petroleum hydrocarbons from oil field produced waters

    Energy Technology Data Exchange (ETDEWEB)

    Tellez, G.; Khandan, N.

    1995-12-31

    The feasibility of removing petroleum hydrocarbons from oil fields produced waters using biological treatment was evaluated under laboratory and field conditions. Based on previous laboratory studies, a field-scale prototype system was designed and operated over a period of four months. Two different sources of produced waters were tested in this field study under various continuous flow rates ranging from 375 1/D to 1,800 1/D. One source of produced water was an open storage pit; the other, a closed storage tank. The TDS concentrations of these sources exceeded 50,000 mg/l; total n-alkanes exceeded 100 mg/l; total petroleum hydrocarbons exceeded 125 mg/l; and total BTEX exceeded 3 mg/l. Removals of total n-alkanes, total petroleum hydrocarbons, and BTEX remained consistently high over 99%. During these tests, the energy costs averaged $0.20/bbl at 12 bbl/D.

  15. Activity pattern and thermal biology of a day-flying hawkmoth (Macroglossum stellatarum) under Mediterranean summer conditions

    OpenAIRE

    Herrera, Carlos M.

    1992-01-01

    1 The daily activity pattern and aspects of the thermal biology are described for the day-flying hawkmoth, Macroglossum stellatarum L. (Lepidoptera: Sphingidae), while foraging at a flowering population of Lavandula latifolia (Labiatae) under the dry-hot summer conditions of a southeastern Spanish locality. 2 The average abundance of M.stellatarum remained fairly constant from sunrise to about 17.00 hours (GMT), and a distinct peak occurred in the evening (18.00—20.00 hou...

  16. Optimal integrated process control and maintenance under general deterioration

    International Nuclear Information System (INIS)

    We develop an integrated Statistical Process Control (SPC) and preventive maintenance (PM) model for three-state processes (two operational states and a non-operational failure state) taking into account the interrelation between quality degradation and proneness to complete failure. No restriction is placed on the distributions of the times to quality shifts and failures and different types of inspection policies and tools are allowed signifying a wide practical applicability of the model. The proposed scheme leads to significant economic improvement compared to: (a) independently obtained SPC and PM policies, which treat quality shifts and failures in isolation, and (b) approximate models, which assume Markovian deterioration. - Highlights: ► Joint statistical process control and maintenance procedures are considered. ► The random times to quality shifts and failures follow general distributions. ► The model combines minimal and perfect preventive maintenance actions. ► The economic effectiveness of the proposed integrated model is illustrated.

  17. Reduction of overestimation in interval arithmetic simulation of biological wastewater treatment processes

    Science.gov (United States)

    Rauh, Andreas; Kletting, Marco; Aschemann, Harald; Hofer, Eberhard P.

    2007-02-01

    A novel interval arithmetic simulation approach is introduced in order to evaluate the performance of biological wastewater treatment processes. Such processes are typically modeled as dynamical systems where the reaction kinetics appears as additive nonlinearity in state. In the calculation of guaranteed bounds of state variables uncertain parameters and uncertain initial conditions are considered. The recursive evaluation of such systems of nonlinear state equations yields overestimation of the state variables that is accumulating over the simulation time. To cope with this wrapping effect, innovative splitting and merging criteria based on a recursive uncertain linear transformation of the state variables are discussed. Additionally, re-approximation strategies for regions in the state space calculated by interval arithmetic techniques using disjoint subintervals improve the simulation quality significantly if these regions are described by several overlapping subintervals. This simulation approach is used to find a practical compromise between computational effort and simulation quality. It is pointed out how these splitting and merging algorithms can be combined with other methods that aim at the reduction of overestimation by applying consistency techniques. Simulation results are presented for a simplified reduced-order model of the reduction of organic matter in the activated sludge process of biological wastewater treatment.

  18. Potential biological hazard of importance for HACCP plans in fresh fish processing

    Directory of Open Access Journals (Sweden)

    Baltić Milan Ž.

    2009-01-01

    Full Text Available The Hazard Analysis and Critical Control Point (HACCP system is scientifically based and focused on problem prevention in order to assure the produced food products are safe to consume. Prerequisite programs such as GMP (Good Manufacturing Practices, GHP (Good Hygienic Practices are an essential foundation for the development and implementation of successful HACCP plans. One of the preliminary tasks in the development of HACCP plan is to conduct a hazard analysis. The process of conducting a hazard analysis involves two stages. The first is hazard identification and the second stage is the HACCP team decision which potential hazards must be addressed in the HACCP plan. By definition, the HACCP concept covers all types of potential food safety hazards: biological, chemical and physical, whether they are naturally occurring in the food, contributed by the environment or generated by a mistake in the manufacturing process. In raw fish processing, potential significant biological hazards which are reasonably likely to cause illness of humans are parasites (Trematodae, Nematodae, Cestodae, bacteria (Salmonella, E. coli, Vibrio parahemolyticus, Vibrio vulnificus, Listeria monocytogenes, Clostridium botulinum, Staphyloccocus aureus, viruses (Norwalk virus, Entero virusesi, Hepatitis A, Rotovirus and bio-toxins. Upon completion of hazard analysis, any measure(s that are used to control the hazard(s should be described.

  19. Combination of Advanced Oxidation Processes and biological treatments for wastewater decontamination--a review.

    Science.gov (United States)

    Oller, I; Malato, S; Sánchez-Pérez, J A

    2011-09-15

    Nowadays there is a continuously increasing worldwide concern for development of alternative water reuse technologies, mainly focused on agriculture and industry. In this context, Advanced Oxidation Processes (AOPs) are considered a highly competitive water treatment technology for the removal of those organic pollutants not treatable by conventional techniques due to their high chemical stability and/or low biodegradability. Although chemical oxidation for complete mineralization is usually expensive, its combination with a biological treatment is widely reported to reduce operating costs. This paper reviews recent research combining AOPs (as a pre-treatment or post-treatment stage) and bioremediation technologies for the decontamination of a wide range of synthetic and real industrial wastewater. Special emphasis is also placed on recent studies and large-scale combination schemes developed in Mediterranean countries for non-biodegradable wastewater treatment and reuse. The main conclusions arrived at from the overall assessment of the literature are that more work needs to be done on degradation kinetics and reactor modeling of the combined process, and also dynamics of the initial attack on primary contaminants and intermediate species generation. Furthermore, better economic models must be developed to estimate how the cost of this combined process varies with specific industrial wastewater characteristics, the overall decontamination efficiency and the relative cost of the AOP versus biological treatment. PMID:20956012

  20. Nanomaterial processing using self-assembly-bottom-up chemical and biological approaches

    International Nuclear Information System (INIS)

    Nanotechnology is touted as the next logical sequence in technological evolution. This has led to a substantial surge in research activities pertaining to the development and fundamental understanding of processes and assembly at the nanoscale. Both top-down and bottom-up fabrication approaches may be used to realize a range of well-defined nanostructured materials with desirable physical and chemical attributes. Among these, the bottom-up self-assembly process offers the most realistic solution toward the fabrication of next-generation functional materials and devices. Here, we present a comprehensive review on the physical basis behind self-assembly and the processes reported in recent years to direct the assembly of nanoscale functional blocks into hierarchically ordered structures. This paper emphasizes assembly in the synthetic domain as well in the biological domain, underscoring the importance of biomimetic approaches toward novel materials. In particular, two important classes of directed self-assembly, namely, (i) self-assembly among nanoparticle–polymer systems and (ii) external field-guided assembly are highlighted. The spontaneous self-assembling behavior observed in nature that leads to complex, multifunctional, hierarchical structures within biological systems is also discussed in this review. Recent research undertaken to synthesize hierarchically assembled functional materials have underscored the need as well as the benefits harvested in synergistically combining top-down fabrication methods with bottom-up self-assembly. (review article)

  1. Combination of Advanced Oxidation Processes and biological treatments for wastewater decontamination-A review

    International Nuclear Information System (INIS)

    Nowadays there is a continuously increasing worldwide concern for development of alternative water reuse technologies, mainly focused on agriculture and industry. In this context, Advanced Oxidation Processes (AOPs) are considered a highly competitive water treatment technology for the removal of those organic pollutants not treatable by conventional techniques due to their high chemical stability and/or low biodegradability. Although chemical oxidation for complete mineralization is usually expensive, its combination with a biological treatment is widely reported to reduce operating costs. This paper reviews recent research combining AOPs (as a pre-treatment or post-treatment stage) and bioremediation technologies for the decontamination of a wide range of synthetic and real industrial wastewater. Special emphasis is also placed on recent studies and large-scale combination schemes developed in Mediterranean countries for non-biodegradable wastewater treatment and reuse. The main conclusions arrived at from the overall assessment of the literature are that more work needs to be done on degradation kinetics and reactor modeling of the combined process, and also dynamics of the initial attack on primary contaminants and intermediate species generation. Furthermore, better economic models must be developed to estimate how the cost of this combined process varies with specific industrial wastewater characteristics, the overall decontamination efficiency and the relative cost of the AOP versus biological treatment.

  2. Worry and rumination : underlying processes and transdiagnostic characteristics

    NARCIS (Netherlands)

    Drost, Jolijn

    2014-01-01

    Worry and rumination are cognitive processes that have been proposed to constitute a driving force across many psychological disorders, emotional disorders in particular. The two concepts are often referred to by the overarching term repetitive negative thinking (RNT), however whether they are indee

  3. Minimization of water consumption under uncertainty for PC process

    International Nuclear Information System (INIS)

    Integrated gasification combined cycle (IGCC) technology is becoming increasingly important for the development of advanced power generation systems. As an emerging technology different process configurations have been heuristically proposed for IGCC processes. One of these schemes combines water-gas shift reaction and chemical-looping combustion for the CO2 removal prior the fuel gas is fed to the gas turbine reducing its size (improving economic performance) and producing sequestration-ready CO2 (improving its cleanness potential). However, these schemes have not been energetically integrated and process synthesis techniques can be used to obtain optimal flowsheets and designs. This work studies the heat exchange network synthesis (HENS) for the water-gas shift reaction train employing a set of alternative designs provided by Aspen energy analyzer (AEA) and combined in a process superstructure that was simulated in Aspen Plus (AP). For the alternative designs, large differences in the performance parameters (for instance, the utility requirements) predictions from AEA and AP were observed, suggesting the necessity of solving the HENS problem within the AP simulation environment and avoiding the AEA simplifications. A CAPE-OPEN compliant capability which makes use of a MINLP algorithm for sequential modular simulators was employed to obtain a heat exchange network that provided a cost of energy that was 27% lower than the base case.

  4. Study Under AC Stimulation on Excitement Properties of Weighted Small-World Biological Neural Networks with Side-Restrain Mechanism

    Institute of Scientific and Technical Information of China (English)

    YUAN Wu-Jie; LUO Xiao-Shu; JIANG Pin-Qun

    2007-01-01

    In this paper,we propose a new model of weighted small-world biological neural networks based on biophysical Hodgkin-Huxley neurons with side-restrain mechanism.Then we study excitement properties of the model under alternating current (AC) stimulation.The study shows that the excitement properties in the networks are preferably consistent with the behavior properties of a brain nervous system under different AC stimuli,such as refractory period and the brain neural excitement response induced by different intensities of nolse and coupling.The results of the study have reference worthiness for the brain nerve electrophysiology and epistemological science.

  5. Study Under AC Stimulation on Excitement Properties of Weighted Small-World Biological Neural Networks with Side-Restrain Mechanism

    International Nuclear Information System (INIS)

    In this paper, we propose a new model of weighted small-world biological neural networks based on biophysical Hodgkin-Huxley neurons with side-restrain mechanism. Then we study excitement properties of the model under alternating current (AC) stimulation. The study shows that the excitement properties in the networks are preferably consistent with the behavior properties of a brain nervous system under different AC stimuli, such as refractory period and the brain neural excitement response induced by different intensities of noise and coupling. The results of the study have reference worthiness for the brain nerve electrophysiology and epistemological science.

  6. Principles for integrating reactive species into in vivo biological processes: Examples from exercise physiology.

    Science.gov (United States)

    Margaritelis, Nikos V; Cobley, James N; Paschalis, Vassilis; Veskoukis, Aristidis S; Theodorou, Anastasios A; Kyparos, Antonios; Nikolaidis, Michalis G

    2016-04-01

    The equivocal role of reactive species and redox signaling in exercise responses and adaptations is an example clearly showing the inadequacy of current redox biology research to shed light on fundamental biological processes in vivo. Part of the answer probably relies on the extreme complexity of the in vivo redox biology and the limitations of the currently applied methodological and experimental tools. We propose six fundamental principles that should be considered in future studies to mechanistically link reactive species production to exercise responses or adaptations: 1) identify and quantify the reactive species, 2) determine the potential signaling properties of the reactive species, 3) detect the sources of reactive species, 4) locate the domain modified and verify the (ir)reversibility of post-translational modifications, 5) establish causality between redox and physiological measurements, 6) use selective and targeted antioxidants. Fulfilling these principles requires an idealized human experimental setting, which is certainly a utopia. Thus, researchers should choose to satisfy those principles, which, based on scientific evidence, are most critical for their specific research question. PMID:26721187

  7. Influence of physical and chemical factors on biological leaching process of copper from printed circuit boards

    Directory of Open Access Journals (Sweden)

    J. Willner

    2013-04-01

    Full Text Available The article presents the results of the research regarding the biological leaching of this metal from electronic wastes components in the form of printed circuit boards. The purpose of the study was to evaluate the influence of some physical and chemical factors (e.g. pH, oxidation-reduction potential on bioleaching process and efficiency of copper transfer from solid phase into solution. Bioleaching experiments were carried out with pure cultures of Acidithiobacillus ferrooxidans. The obtained results were discussed.

  8. Antibiotic abatement in different advanced oxidation processes coupled with a biological sequencing batch biofilm reactor

    International Nuclear Information System (INIS)

    During the last decade, the lack of fresh water is becoming a major concern. Recently, the present of recalcitrant products such as pharmaceuticals has caused a special interest due to their undefined environmental impact. Among these antibiotics are one of the numerous recalcitrant pollutants present in surface waters that might not be completely removed in the biological stage of sewage treatment plants because of their antibacterial nature. Advanced Oxidation Processes (AOPs) have proved to be highly efficient for the degradation of most organic pollutants in wastewaters. (Author)

  9. Theoretical study of the molecular bases that control photochemical processes with biological and nanotechnological interest

    OpenAIRE

    Saurí Peris, Vicenta

    2013-01-01

    El trabajo desarrollado en la tesis doctoral que lleva por título "Theoretical study of the molecular bases that control photochemical processes with biological and nanotechnological interest" se enmarca en las líneas de investigación del grupo QCEXVAL (Quantum Chemistry of the Excited State University of Valencia), que nació en el seno del departamento de Química Física de la Universitat de València en 1993. Se han abordado temas de interés metodológico, biológico y nanotecnológico. La prime...

  10. Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions

    OpenAIRE

    Yingyu Law; Rasmus Hansen Kirkegaard; Angel Anisa Cokro; Xianghui Liu; Krithika Arumugam; Chao Xie; Mikkel Stokholm-Bjerregaard; Drautz-Moses, Daniela I.; Per Halkjær Nielsen; Stefan Wuertz; Rohan B. H. Williams

    2016-01-01

    Management of phosphorus discharge from human waste is essential for the control of eutrophication in surface waters. Enhanced biological phosphorus removal (EBPR) is a sustainable, efficient way of removing phosphorus from waste water without employing chemical precipitation, but is assumed unachievable in tropical temperatures due to conditions that favour glycogen accumulating organisms (GAOs) over polyphosphate accumulating organisms (PAOs). Here, we show these assumptions are unfounded b...

  11. Suitability of Commercial Transport Media for Biological Pathogens under Nonideal Conditions

    OpenAIRE

    Peter Emanuel; Kyle Hubbard; Gregory Pellar

    2011-01-01

    There is extensive data to support the use of commercial transport media as a stabilizer for known clinical samples; however, there is little information to support their use outside of controlled conditions specified by the manufacturer. Furthermore, there is no data to determine the suitability of said media for biological pathogens, specifically those of interest to the US military. This study evaluates commercial off-the-shelf (COTS) transport media based on sample recovery, viability, an...

  12. Composting of the solid fraction of digestate derived from pig slurry: Biological processes and compost properties

    Energy Technology Data Exchange (ETDEWEB)

    Tambone, Fulvia, E-mail: fulvia.tambone@unimi.it; Terruzzi, Laura; Scaglia, Barbara; Adani, Fabrizio

    2015-01-15

    Highlights: • Anaerobic digestion leads to the production of a biologically stable digestate. • Solid–liquid separation produces a solid fraction having high fertilizer value. • Composting process shows low biological activity due to high biological stability of digestate. • Solid digestate fraction can be composted in a short time or used directly as organic fertilizer. - Abstract: The aim of this paper was to assess the characteristics of the solid fractions (SF) obtained by mechanical separation of digestate, their compostability and compost quality. To do so, the SF of digestates obtained from anaerobic digestion of pig slurry, energy crops and agro-industrial residues were sampled in five plants located in Northern Italy. Results obtained indicated that anaerobic digestion by itself promoted the high biological stability of biomasses with a Potential Dynamic Respiration Index (PDRI) close to 1000 mgO{sub 2} kg V S{sup −1} h{sup −1}. Subsequent composting of digestates, with an added bulking agent, did not give remarkably different results, and led only to a slight modification of the characteristics of the initial non-composted mixtures; the composts obtained fully respected the legal limits for high quality compost. Chemical studies of organic matter composition of the biomasses by using CP MAS {sup 13}C NMR, indicated that the compost was composed of a high relative content of O-alkyl-C (71.47% of total C) (cellulose and hemicelluloses) and a low alkyl-C (12.42%) (i.e. volatile fatty acids, steroid-like molecules, aliphatic biopolymers and proteins)

  13. Composting of the solid fraction of digestate derived from pig slurry: Biological processes and compost properties

    International Nuclear Information System (INIS)

    Highlights: • Anaerobic digestion leads to the production of a biologically stable digestate. • Solid–liquid separation produces a solid fraction having high fertilizer value. • Composting process shows low biological activity due to high biological stability of digestate. • Solid digestate fraction can be composted in a short time or used directly as organic fertilizer. - Abstract: The aim of this paper was to assess the characteristics of the solid fractions (SF) obtained by mechanical separation of digestate, their compostability and compost quality. To do so, the SF of digestates obtained from anaerobic digestion of pig slurry, energy crops and agro-industrial residues were sampled in five plants located in Northern Italy. Results obtained indicated that anaerobic digestion by itself promoted the high biological stability of biomasses with a Potential Dynamic Respiration Index (PDRI) close to 1000 mgO2 kg V S−1 h−1. Subsequent composting of digestates, with an added bulking agent, did not give remarkably different results, and led only to a slight modification of the characteristics of the initial non-composted mixtures; the composts obtained fully respected the legal limits for high quality compost. Chemical studies of organic matter composition of the biomasses by using CP MAS 13C NMR, indicated that the compost was composed of a high relative content of O-alkyl-C (71.47% of total C) (cellulose and hemicelluloses) and a low alkyl-C (12.42%) (i.e. volatile fatty acids, steroid-like molecules, aliphatic biopolymers and proteins)

  14. Males Under-Estimate Academic Performance of Their Female Peers in Undergraduate Biology Classrooms.

    Science.gov (United States)

    Grunspan, Daniel Z; Eddy, Sarah L; Brownell, Sara E; Wiggins, Benjamin L; Crowe, Alison J; Goodreau, Steven M

    2016-01-01

    Women who start college in one of the natural or physical sciences leave in greater proportions than their male peers. The reasons for this difference are complex, and one possible contributing factor is the social environment women experience in the classroom. Using social network analysis, we explore how gender influences the confidence that college-level biology students have in each other's mastery of biology. Results reveal that males are more likely than females to be named by peers as being knowledgeable about the course content. This effect increases as the term progresses, and persists even after controlling for class performance and outspokenness. The bias in nominations is specifically due to males over-nominating their male peers relative to their performance. The over-nomination of male peers is commensurate with an overestimation of male grades by 0.57 points on a 4 point grade scale, indicating a strong male bias among males when assessing their classmates. Females, in contrast, nominated equitably based on student performance rather than gender, suggesting they lacked gender biases in filling out these surveys. These trends persist across eleven surveys taken in three different iterations of the same Biology course. In every class, the most renowned students are always male. This favoring of males by peers could influence student self-confidence, and thus persistence in this STEM discipline. PMID:26863320

  15. Males Under-Estimate Academic Performance of Their Female Peers in Undergraduate Biology Classrooms.

    Directory of Open Access Journals (Sweden)

    Daniel Z Grunspan

    Full Text Available Women who start college in one of the natural or physical sciences leave in greater proportions than their male peers. The reasons for this difference are complex, and one possible contributing factor is the social environment women experience in the classroom. Using social network analysis, we explore how gender influences the confidence that college-level biology students have in each other's mastery of biology. Results reveal that males are more likely than females to be named by peers as being knowledgeable about the course content. This effect increases as the term progresses, and persists even after controlling for class performance and outspokenness. The bias in nominations is specifically due to males over-nominating their male peers relative to their performance. The over-nomination of male peers is commensurate with an overestimation of male grades by 0.57 points on a 4 point grade scale, indicating a strong male bias among males when assessing their classmates. Females, in contrast, nominated equitably based on student performance rather than gender, suggesting they lacked gender biases in filling out these surveys. These trends persist across eleven surveys taken in three different iterations of the same Biology course. In every class, the most renowned students are always male. This favoring of males by peers could influence student self-confidence, and thus persistence in this STEM discipline.

  16. Males Under-Estimate Academic Performance of Their Female Peers in Undergraduate Biology Classrooms

    Science.gov (United States)

    Brownell, Sara E.; Wiggins, Benjamin L.; Crowe, Alison J.; Goodreau, Steven M.

    2016-01-01

    Women who start college in one of the natural or physical sciences leave in greater proportions than their male peers. The reasons for this difference are complex, and one possible contributing factor is the social environment women experience in the classroom. Using social network analysis, we explore how gender influences the confidence that college-level biology students have in each other’s mastery of biology. Results reveal that males are more likely than females to be named by peers as being knowledgeable about the course content. This effect increases as the term progresses, and persists even after controlling for class performance and outspokenness. The bias in nominations is specifically due to males over-nominating their male peers relative to their performance. The over-nomination of male peers is commensurate with an overestimation of male grades by 0.57 points on a 4 point grade scale, indicating a strong male bias among males when assessing their classmates. Females, in contrast, nominated equitably based on student performance rather than gender, suggesting they lacked gender biases in filling out these surveys. These trends persist across eleven surveys taken in three different iterations of the same Biology course. In every class, the most renowned students are always male. This favoring of males by peers could influence student self-confidence, and thus persistence in this STEM discipline. PMID:26863320

  17. Neural Correlates of Feedback Processing in Decision Making under Risk

    Directory of Open Access Journals (Sweden)

    Beate eSchuermann

    2012-07-01

    Full Text Available Introduction. Event-related brain potentials (ERP provide important information about the sensitivity of the brain to process varying risks. The aim of the present study was to determine how different risk levels are reflected in decision-related ERPs, namely the feedback-related negativity (FRN and the P300. Material and Methods. 20 participants conducted a probabilistic two-choice gambling task while an electroencephalogram was recorded. Choices were provided between a low-risk option yielding low rewards and low losses and a high-risk option yielding high rewards and high losses. While options differed in expected risks, they were equal in expected values and in feedback probabilities. Results. At the behavioral level, participants were generally risk-averse but modulated their risk-taking behavior according to reward history. An early positivity (P200 was enhanced on negative feedbacks in high-risk compared to low-risk options. With regard to the FRN, there were significant amplitude differences between positive and negative feedbacks in high-risk options, but not in low-risk options. While the FRN on negative feedbacks did not vary with decision riskiness, reduced amplitudes were found for positive feedbacks in high-risk relative to low-risk choices. P300 amplitudes were larger in high-risk decisions, and in an additive way, after negative compared to positive feedback. Discussion. The present study revealed significant influences of risk and valence processing on ERPs. FRN findings suggest that the reward prediction error signal is increased after high-risk decisions. The increased P200 on negative feedback in risky decisions suggests that large negative prediction errors are processed as early as in the P200 time range. The later P300 amplitude is sensitive to feedback valence as well as to the risk of a decision. Thus, the P300 carries additional information for reward processing, mainly the enhanced motivational significance of risky

  18. Comparing biological and thermochemical processing of sugarcane bagasse: An energy balance perspective

    International Nuclear Information System (INIS)

    The technical performance of lignocellulosic enzymatic hydrolysis and fermentation versus pyrolysis processes for sugarcane bagasse was evaluated, based on currently available technology. Process models were developed for bioethanol production from sugarcane bagasse using three different pretreatment methods, i.e. dilute acid, liquid hot water and steam explosion, at various solid concentrations. Two pyrolysis processes, namely fast pyrolysis and vacuum pyrolysis, were considered as alternatives to biological processing for the production of biofuels from sugarcane bagasse. For bioethanol production, a minimum of 30% solids in the pretreatment reactor was required to render the process energy self-sufficient, which led to a total process energy demand equivalent to roughly 40% of the feedstock higher heating value. Both vacuum pyrolysis and fast pyrolysis could be operated as energy self-sufficient if 45% of the produced char from fast pyrolysis is used to fuel the process. No char energy is required to fuel the vacuum pyrolysis process due to lower process energy demands (17% compared to 28% of the feedstock higher heating value). The process models indicated that effective process heat integration can result in a 10-15% increase in all process energy efficiencies. Process thermal efficiencies between 52 and 56% were obtained for bioethanol production at pretreatment solids at 30% and 50%, respectively, while the efficiencies were 70% for both pyrolysis processes. The liquid fuel energy efficiency of the best bioethanol process is 41%, while that of crude bio-oil production before upgrading is 67% and 56% via fast and vacuum pyrolysis, respectively. Efficiencies for pyrolysis processes are expected to decrease by up to 15% should upgrade to a transportation fuel of equivalent quality to bioethanol be taken into consideration. -- Highlights: → Liquid biofuels can be produced via lignocellulosic enzymatic hydrolysis and fermentation or pyrolysis. → A minimum of

  19. A model for optimization of process integration investments under uncertainty

    International Nuclear Information System (INIS)

    The long-term economic outcome of energy-related industrial investment projects is difficult to evaluate because of uncertain energy market conditions. In this article, a general, multistage, stochastic programming model for the optimization of investments in process integration and industrial energy technologies is proposed. The problem is formulated as a mixed-binary linear programming model where uncertainties are modelled using a scenario-based approach. The objective is to maximize the expected net present value of the investments which enables heat savings and decreased energy imports or increased energy exports at an industrial plant. The proposed modelling approach enables a long-term planning of industrial, energy-related investments through the simultaneous optimization of immediate and later decisions. The stochastic programming approach is also suitable for modelling what is possibly complex process integration constraints. The general model formulation presented here is a suitable basis for more specialized case studies dealing with optimization of investments in energy efficiency. -- Highlights: → Stochastic programming approach to long-term planning of process integration investments. → Extensive mathematical model formulation. → Multi-stage investment decisions and scenario-based modelling of uncertain energy prices. → Results illustrate how investments made now affect later investment and operation opportunities. → Approach for evaluation of robustness with respect to variations in probability distribution.

  20. Techno-economic evaluation of a two-step biological process for hydrogen production.

    Science.gov (United States)

    Ljunggren, Mattias; Zacchi, Guido

    2010-01-01

    An integrated biological process for the production of hydrogen based on thermophilic and photo-heterotrophic fermentation was evaluated from a technical and economic standpoint. Besides the two fermentation steps the process also includes pretreatment of the raw material (potato steam peels) and purification of hydrogen using amine absorption. The study aimed neither at determining the absolute cost of biohydrogen nor at an economic optimization of the production process, but rather at studying the effects of different parameters on the production costs of biohydrogen as a guideline for future improvements. The effect of the key parameters, hydrogen productivity and yield and substrate concentration in the two fermentations on the cost of the hydrogen produced was studied. The selection of the process conditions was based mainly on laboratory data. The process was simulated by use of the software Aspen Plus and the capital costs were estimated using the program Aspen Icarus Process Evaluator. The study shows that the photo-fermentation is the main contributor to the hydrogen production cost mainly because of the cost of plastic tubing, for the photo-fermentors, which represents 40.5% of the hydrogen production cost. The costs of the capital investment and chemicals were also notable contributors to the hydrogen production cost. Major economic improvements could be achieved by increasing the productivity of the two fermentation steps on a medium-term to long-term scale. PMID:20039381

  1. Advances in wastewater nitrogen removal by biological processes: state of the art review

    Directory of Open Access Journals (Sweden)

    Andrea G. Capodaglio

    2016-04-01

    Full Text Available The paper summarizes the state-of-the-art of the most recent advances in biological nitrogen removal, including process design criteria and technological innovations. With reference to the Modified Ludzck Ettinger (MLE process (pre-denitrification and nitrification in the activated sludge process, the most common nitrogen removal process used nowadays, a new design equation for the denitrification reactor based on specific denitrification rate (SDNR has been proposed. In addition, factors influencing SDNR (DO in the anoxic reactor; hydrodynamic behavior are analyzed, and technological solutions are proposed. Concerning technological advances, the paper presents a summary of various “deammonification” processes, better known by their patent names like ANAMMOX®, DEMON®, CANON®, ANITA® and others. These processes have already found applications in the treatment of high-strength wastewater such as digested sludge liquor and landfill leachate. Among other emerging denitrification technologies, consideration is given to the Membrane Biofilm Reactors (MBfRs that can be operated both in oxidation and reduction mode.

  2. Controlled Carbon Source Addition to an Alternating Nitrification-Denitrification Wastewater Treatment Process Including Biological P Removal

    DEFF Research Database (Denmark)

    Isaacs, Steven Howard; Henze, Mogens

    1995-01-01

    The paper investigates the effect of adding an external carbon source on the rate of denitrification in an alternating activated sludge process including biological P removal. Two carbon sources were examined, acetate and hydrolysate derived from biologically hydrolyzed sludge. Preliminary batch ...

  3. Assessing Students' Abilities in Processes of Scientific Inquiry in Biology Using a Paper-and-Pencil Test

    Science.gov (United States)

    Nowak, Kathrin Helena; Nehring, Andreas; Tiemann, Rüdiger; Upmeier zu Belzen, Annette

    2013-01-01

    The aim of the study was to describe, categorise and analyse students' (aged 14-16) processes of scientific inquiry in biology and chemistry education. Therefore, a theoretical structure for scientific inquiry for both biology and chemistry, the VerE model, was developed. This model consists of nine epistemological acts, which combine…

  4. Biologically active collagen-based scaffolds: advances in processing and characterization.

    Science.gov (United States)

    Yannas, I V; Tzeranis, D S; Harley, B A; So, P T C

    2010-04-28

    A small number of type I collagen-glycosaminoglycan scaffolds (collagen-GAG scaffolds; CGSs) have unusual biological activity consisting primarily in inducing partial regeneration of organs in the adult mammal. Two of these are currently in use in a variety of clinical settings. CGSs appear to induce regeneration by blocking the adult healing response, following trauma, consisting of wound contraction and scar formation. Several structural determinants of biological activity have been identified, including ligands for binding of fibroblasts to the collagen surface, the mean pore size (which affects ligand density) and the degradation rate (which affects the duration of the wound contraction-blocking activity by the scaffold). Processing variables that affect these determinants include the kinetics of swelling of collagen fibres in acetic acid, freezing of the collagen-GAG suspension and cross-linking of the freeze-dried scaffold. Recent developments in the processing of CGSs include fabrication of scaffolds that are paucidisperse in pore size, scaffolds with gradients in physicochemical properties (and therefore biological activity) and scaffolds that incorporate a mineral component. Advances in the characterization of the pore structure of CGSs have been made using confocal and nonlinear optical microscopy (NLOM). The mechanical behaviour of CGSs, as well as the resistance to degradative enzymes, have been studied. Following seeding with cells (typically fibroblasts), contractile forces in the range 26-450 nN per cell are generated by the cells, leading to buckling of scaffold struts. Ongoing studies of cell-seeded CGSs with NLOM have shown an advantage over the use of confocal microscopy due to the ability of the former method to image the CGS surfaces without staining (which alters its surface ligands), reduced cell photodamage, reduced fluorophore photobleaching and the ability to image deeper inside the scaffold. PMID:20308118

  5. Irreversible magnetic processes under biaxial and uniaxial magnetic anisotropies

    Science.gov (United States)

    Pokharel, S.; Akioya, O.; Alqhtany, N. H.; Dickens, C.; Morgan, W.; Wuttig, M.; Lisfi, A.

    2016-05-01

    Irreversible magnetic processes have been investigated in magnetic systems with two different anisotropy symmetries (uniaxial and biaxial) through angular measurement of the switching field, the irreversible susceptibility and the magnetic viscosity. These two systems consist of two-dimensional cobalt ferrite hetero-structures epitaxially grown on (100) and (110) MgO substrate. It is found that for uniaxial anisotropy the irreversible characteristics of the magnetization are large and display a strong angular dependence, which exhibits its maximum at the easy axis and drops quickly to vanish at the hard axis. However, for biaxial anisotropy the magnetization irreversible characteristics are considerably reduced and are less sensitive to the field angle.

  6. An Automatic Number Plate Recognition System under Image Processing

    Directory of Open Access Journals (Sweden)

    Sarbjit Kaur

    2016-03-01

    Full Text Available Automatic Number Plate Recognition system is an application of computer vision and image processing technology that takes photograph of vehicles as input image and by extracting their number plate from whole vehicle image , it display the number plate information into text. Mainly the ANPR system consists of 4 phases: - Acquisition of Vehicle Image and Pre-Processing, Extraction of Number Plate Area, Character Segmentation and Character Recognition. The overall accuracy and efficiency of whole ANPR system depends on number plate extraction phase as character segmentation and character recognition phases are also depend on the output of this phase. Further the accuracy of Number Plate Extraction phase depends on the quality of captured vehicle image. Higher be the quality of captured input vehicle image more will be the chances of proper extraction of vehicle number plate area. The existing methods of ANPR works well for dark and bright/light categories image but it does not work well for Low Contrast, Blurred and Noisy images and the detection of exact number plate area by using the existing ANPR approach is not successful even after applying existing filtering and enhancement technique for these types of images. Due to wrong extraction of number plate area, the character segmentation and character recognition are also not successful in this case by using the existing method. To overcome these drawbacks I proposed an efficient approach for ANPR in which the input vehicle image is pre-processed firstly by iterative bilateral filtering , adaptive histogram equalization and number plate is extracted from pre-processed vehicle image using morphological operations, image subtraction, image binarization/thresholding, sobel vertical edge detection and by boundary box analysis. Sometimes the extracted plate area also contains noise, bolts, frames etc. So the extracted plate area is enhanced by using morphological operations to improve the quality of

  7. Management of biological processes in alley farming: Need for more research

    International Nuclear Information System (INIS)

    Alley farming involves the integration of trees, managed as hedgerows, within cropping systems. Research has shown that the system is highly stable and sustainable. The trees act within the system both as a nutrient pump and nutrient source, ensuring the constant injection of nutrients and their efficient cycling within the system. Nitrogen-fixing trees have a great capacity for maintaining soil fertility and sustainability in such systems, because of biological nitrogen fixation and its contribution to soil fertility. Some tree species such as Leucaena leucocephala, Gliricidia sepium can fix as much as 200-300 kg N/ha/year while others such as Faidherbia albida may fix only one tenth. Senna siamea and S. spectabilis do not fix N2. Nitrogen input from prunings of nitrogen fixing trees to alley farming systems is high but its use efficiency by an associated crop is low (10-30%). It may be that not enough is known of the basics of the biological processes to improve N use efficiency in alley cropping. This paper calls for increased research into such processes using precise and appropriate methodologies such as isotope aided techniques. (author). 33 refs, 2 tabs

  8. Combined advanced oxidation and biological treatment processes for the removal of pesticides from aqueous solutions

    International Nuclear Information System (INIS)

    Advanced oxidation processes were combined with biological treatment processes in this study to remove both pesticides and then the COD load from aqueous solutions. It was found that O3 and O3/UV oxidation systems were able to reach 90 and 100%, removal of the pesticide Deltamethrin, respectively, in a period of 210 min. The use of O3 combined with UV radiation enhances pesticides degradation and the residual pesticide reaches zero in the case of Deltamethrin. The combined O3/UV system can reduce COD up to 20% if the pH of the solution is above 4. Both pesticide degradation and COD removal in the combined O3/UV system follow the pseudo-first-order kinetics and the parameters of this model were evaluated. The application of the biological treatment to remove the bulk COD from different types of feed solution was investigated. More than 95% COD removal was achieved when treated wastewater by the O3/UV system was fed to the bioreactor. The parameters of the proposed Grau model were estimated

  9. A single-stage biological process for municipal sewage treatment in tourist areas.

    Science.gov (United States)

    Di Iaconi, C; De Sanctis, M; Lopez, A

    2014-11-01

    This pilot scale study aims to test the effectiveness of an innovative compact biological system (SBBGR - Sequencing Batch Biofilter Granular Reactor) for treating municipal wastewater in tourist areas characterised by intense seasonal water demand and wastewater discharge. The results obtained after a long term operation of 463 days have shown that the proposed system is able to assure average removal efficiencies higher than 90% for COD (chemical oxygen demand), total suspended solids and TKN (total Kjeldahl nitrogen) independently of the influent concentration values and organic loading, which ranged from 0.2 to 5.1 kgCOD/m(3)biofilter.d Furthermore, the plant showed a high degree of operation flexibility and stability in response to the organic load variations occurring in tourist areas. In fact, no significant deterioration in the plant's effluent quality was observed even during a sudden several-fold increase in organic loading. High nitrogen removal efficiencies (80%, on average) were also achieved thanks to the establishment of simultaneous nitrification-denitrification process favoured by the plant's high biomass concentration and operating conditions. Finally, the system was characterized by an excess sludge production much lower (60-80% lower) than that of conventional biological systems operating without a primary clarifier. An acceptable level of stabilization of excess sludge was also obtained so that a further stabilization process was no longer required. PMID:24908613

  10. eQTL Regulating Transcript Levels Associated with Diverse Biological Processes in Tomato.

    Science.gov (United States)

    Ranjan, Aashish; Budke, Jessica M; Rowland, Steven D; Chitwood, Daniel H; Kumar, Ravi; Carriedo, Leonela; Ichihashi, Yasunori; Zumstein, Kristina; Maloof, Julin N; Sinha, Neelima R

    2016-09-01

    Variation in gene expression, in addition to sequence polymorphisms, is known to influence developmental, physiological, and metabolic traits in plants. Genetic mapping populations have facilitated identification of expression quantitative trait loci (eQTL), the genetic determinants of variation in gene expression patterns. We used an introgression population developed from the wild desert-adapted Solanum pennellii and domesticated tomato (Solanum lycopersicum) to identify the genetic basis of transcript level variation. We established the effect of each introgression on the transcriptome and identified approximately 7,200 eQTL regulating the steady-state transcript levels of 5,300 genes. Barnes-Hut t-distributed stochastic neighbor embedding clustering identified 42 modules revealing novel associations between transcript level patterns and biological processes. The results showed a complex genetic architecture of global transcript abundance pattern in tomato. Several genetic hot spots regulating a large number of transcript level patterns relating to diverse biological processes such as plant defense and photosynthesis were identified. Important eQTL regulating transcript level patterns were related to leaf number and complexity as well as hypocotyl length. Genes associated with leaf development showed an inverse correlation with photosynthetic gene expression, but eQTL regulating genes associated with leaf development and photosynthesis were dispersed across the genome. This comprehensive eQTL analysis details the influence of these loci on plant phenotypes and will be a valuable community resource for investigations on the genetic effects of eQTL on phenotypic traits in tomato. PMID:27418589

  11. Connecting marine productivity to sea-spray via nanoscale biological processes: Phytoplankton Dance or Death Disco?

    Science.gov (United States)

    O'Dowd, Colin; Ceburnis, Darius; Ovadnevaite, Jurgita; Bialek, Jakub; Stengel, Dagmar B.; Zacharias, Merry; Nitschke, Udo; Connan, Solene; Rinaldi, Matteo; Fuzzi, Sandro; Decesari, Stefano; Cristina Facchini, Maria; Marullo, Salvatore; Santoleri, Rosalia; Dell'Anno, Antonio; Corinaldesi, Cinzia; Tangherlini, Michael; Danovaro, Roberto

    2015-10-01

    Bursting bubbles at the ocean-surface produce airborne salt-water spray-droplets, in turn, forming climate-cooling marine haze and cloud layers. The reflectance and ultimate cooling effect of these layers is determined by the spray’s water-uptake properties that are modified through entrainment of ocean-surface organic matter (OM) into the airborne droplets. We present new results illustrating a clear dependence of OM mass-fraction enrichment in sea spray (OMss) on both phytoplankton-biomass, determined from Chlorophyll-a (Chl-a) and Net Primary Productivity (NPP). The correlation coefficient for OMss as a function of Chl-a increased form 0.67 on a daily timescale to 0.85 on a monthly timescale. An even stronger correlation was found as a function of NPP, increasing to 0.93 on a monthly timescale. We suggest the observed dependence is through the demise of the bloom, driven by nanoscale biological processes (such as viral infections), releasing large quantities of transferable OM comprising cell debris, exudates and other colloidal materials. This OM, through aggregation processes, leads to enrichment in sea-spray, thus demonstrating an important coupling between biologically-driven plankton bloom termination, marine productivity and sea-spray modification with potentially significant climate impacts.

  12. CHANGES IN THE MICROBIAL COMPOSITION OF MUNICIPAL WASTEWATER TREATED IN BIOLOGICAL PROCESSES

    Directory of Open Access Journals (Sweden)

    Aleksandra Jolanta Bawiec

    2016-07-01

    Full Text Available Municipal wastewater is characterized by diverse microbial content, largely dependent on their sources as well as many other factors like condition and health of their producer, but also environmental factors. The number and share of individual bacterial population in wastewater is changing during the process of their treatment in wastewater treatment plants. The microbial content of treated wastewater is significantly affected by the type of technology used for wastewater treatment. The paper presents the results of the species composition of bacteria present in the wastewater at various stages of treatment for the two different technologies. Samples of wastewater from hydroponic wastewater treatment plant and from the plant which technology is based on biofilters were analysed. A key mechanism for wastewater treatment in both cases is biological treatment, using microbial activity that decomposes pollutants in the wastewater, which significantly contributes to changes in the species composition of bacteria comparing to microbiological composition of sewage flowing into the treatment plant. Analyses of microbial composition showed that in the objects consisting of preliminary tank and biofilter, composition of bacteria species is changing, but many species isolated from raw sewage is also found in treated wastewater. In the plant with hydroponic lagoon after wastewater treatment throughout the process system, bacteria present in raw sewage or in wastewater after biological treatment were not identified in the outlet.

  13. Distorted wave calculations for electron loss process induced by bare ion impact on biological targets

    International Nuclear Information System (INIS)

    Distorted wave models are employed to investigate the electron loss process induced by bare ions on biological targets. The two main reactions which contribute to this process, namely, the single electron ionization as well as the single electron capture are here studied. In order to further assess the validity of the theoretical descriptions used, the influence of particular mechanisms are studied, like dynamic screening for the case of electron ionization and energy deposition on the target by the impacting projectile for the electron capture one. Results are compared with existing experimental data. - Highlights: ► Distorted wave models are used to investigate ion-molecule collisions. ► Differential and total cross-sections for capture and ionization are evaluated. ► The influence of dynamic screening is determined. ► Capture reaction dominates the mean energy deposited by the projectile on the target

  14. Signal processing for molecular and cellular biological physics: an emerging field

    Science.gov (United States)

    Little, Max A.; Jones, Nick S.

    2013-01-01

    Recent advances in our ability to watch the molecular and cellular processes of life in action—such as atomic force microscopy, optical tweezers and Forster fluorescence resonance energy transfer—raise challenges for digital signal processing (DSP) of the resulting experimental data. This article explores the unique properties of such biophysical time series that set them apart from other signals, such as the prevalence of abrupt jumps and steps, multi-modal distributions and autocorrelated noise. It exposes the problems with classical linear DSP algorithms applied to this kind of data, and describes new nonlinear and non-Gaussian algorithms that are able to extract information that is of direct relevance to biological physicists. It is argued that these new methods applied in this context typify the nascent field of biophysical DSP. Practical experimental examples are supplied. PMID:23277603

  15. Sensitivity analysis for casting process under stochastic modelling

    Directory of Open Access Journals (Sweden)

    Amit Kumar

    2015-09-01

    Full Text Available The present paper studies the reliability analysis of the casting process in foundry work using a probabilistic approach. As foundry industries in many developing countries suffer from poor quality of casting due to improper management, lack of resources and wrong working methods followed, which results in the decrement of productivity. Hence, to ensure the quality and productivity, favorable steps must be taken. The considered casting system has four main types of defects; namely mold shift, shrinkage, cold shut and blowholes. The complete casting system can fail due to the misalignment of the mold and combination of defects such as shrinkage and blow holes and can also fail by defects of shrinkage, blow holes and cold shut, simultaneously. The system is analyzed with the help of the supplementary variable technique and Laplace transformation. The availability, reliability, mean time to failure, sensitivity analysis and cost-effectiveness have been evaluated for the considered system. The results have been shown with the help of graphs, which predicts the behavior of the casting process system when any one of the defect or more than one defect appears.

  16. Degradation of a textile reactive azo dye by a combined biological-photocatalytic process: Candida tropicalis Jks2 -Tio2/Uv

    Science.gov (United States)

    2012-01-01

    In the present study, the decolorization and degradation of Reactive Black 5 (RB5) azo dye was investigated by biological, photocatalytic (UV/TiO2) and combined processes. Application of Candida tropicalis JKS2 in treatment of the synthetic medium containing RB5 indicated complete decolorization of the dye with 200 mg/L in less than 24 h. Degradation of the aromatic rings, resulting from the destruction of the dye, did not occur during the biological treatment. Mineralization of 50 mg/L RB5 solution was obtained after 80 min by photocatalytic process (in presence of 0.2 g/L TiO2). COD (chemical oxygen demand) was not detectable after complete decolorization of 50 mg/L RB5 solution. However, photocatalytic process was not effective in the removal of the dye at high concentrations (≥200 mg/L). With 200 mg/L concentration, 74.9% of decolorization was achieved after 4 h illumination under photocatalytic process and the absorbance peak in UV region (attributed to aromatic rings) was not completely removed. A two-step treatment process, namely, biological treatment by yeast followed by photocatalytic degradation, was also assessed. In the combined process (with 200 mg/L RB5), absorbance peak in UV region significantly disappeared after 2 h illumination and about 60% COD removal was achieved in the biological step. It is suggested that the combined process is more effective than the biological and photocatalytic treatments in the remediation of aromatic rings. PMID:23369285

  17. Degradation of a textile reactive azo dye by a combined biological-photocatalytic process: Candida tropicalis Jks2 -Tio2/Uv

    Directory of Open Access Journals (Sweden)

    Narjes Jafari

    2012-12-01

    Full Text Available In the present study, the decolorization and degradation of Reactive Black 5 (RB5 azo dye was investigated by biological, photocatalytic (UV/TiO2 and combined processes.Application of Candida tropicalis JKS2 in treatment of the synthetic medium containing RB5 indicated complete decolorization of the dye with 200 mg/L in less than 24 h. Degradation ofthe aromatic rings, resulting from the destruction of the dye, did not occur during the biological treatment. Mineralization of 50 mg/L RB5 solution was obtained after 80 min by photocatalytic process (in presence of 0.2 g/L TiO2. COD (chemical oxygen demand wasnot detectable after complete decolorization of 50 mg/L RB5 solution. However,photocatalytic process was not effective in the removal of the dye at high concentrations (≥200 mg/L. With 200 mg/L concentration, 74.9% of decolorization was achieved after 4 hillumination under photocatalytic process and the absorbance peak in UV region (attributed to aromatic rings was not completely removed. A two-step treatment process, namely,biological treatment by yeast followed by photocatalytic degradation, was also assessed. In the combined process (with 200 mg/L RB5, absorbance peak in UV region significantly disappeared after 2 h illumination and about 60 % COD removal was achieved in the biological step. It is suggested that the combined process is more effective than the biological and photocatalytic treatments in the remediation of aromatic rings.

  18. Degradation of a textile reactive azo dye by a combined biological-photocatalytic process: Candida tropicalis Jks2 -Tio2/Uv

    Directory of Open Access Journals (Sweden)

    Jafari Narjes

    2012-12-01

    Full Text Available Abstract In the present study, the decolorization and degradation of Reactive Black 5 (RB5 azo dye was investigated by biological, photocatalytic (UV/TiO2 and combined processes. Application of Candida tropicalis JKS2 in treatment of the synthetic medium containing RB5 indicated complete decolorization of the dye with 200 mg/L in less than 24 h. Degradation of the aromatic rings, resulting from the destruction of the dye, did not occur during the biological treatment. Mineralization of 50 mg/L RB5 solution was obtained after 80 min by photocatalytic process (in presence of 0.2 g/L TiO2. COD (chemical oxygen demand was not detectable after complete decolorization of 50 mg/L RB5 solution. However, photocatalytic process was not effective in the removal of the dye at high concentrations (≥200 mg/L. With 200 mg/L concentration, 74.9% of decolorization was achieved after 4 h illumination under photocatalytic process and the absorbance peak in UV region (attributed to aromatic rings was not completely removed. A two-step treatment process, namely, biological treatment by yeast followed by photocatalytic degradation, was also assessed. In the combined process (with 200 mg/L RB5, absorbance peak in UV region significantly disappeared after 2 h illumination and about 60% COD removal was achieved in the biological step. It is suggested that the combined process is more effective than the biological and photocatalytic treatments in the remediation of aromatic rings.

  19. Biological Niches within Human Calcified Aortic Valves: Towards Understanding of the Pathological Biomineralization Process

    Directory of Open Access Journals (Sweden)

    Valentina Cottignoli

    2015-01-01

    Full Text Available Despite recent advances, mineralization site, its microarchitecture, and composition in calcific heart valve remain poorly understood. A multiscale investigation, using scanning electron microscopy (SEM, transmission electron microscopy (TEM, and energy dispersive X-ray spectrometry (EDS, from micrometre up to nanometre, was conducted on human severely calcified aortic and mitral valves, to provide new insights into calcification process. Our aim was to evaluate the spatial relationship existing between bioapatite crystals, their local growing microenvironment, and the presence of a hierarchical architecture. Here we detected the presence of bioapatite crystals in two different mineralization sites that suggest the action of two different growth processes: a pathological crystallization process that occurs in biological niches and is ascribed to a purely physicochemical process and a matrix-mediated mineralized process in which the extracellular matrix acts as the template for a site-directed nanocrystals nucleation. Different shapes of bioapatite crystallization were observed at micrometer scale in each microenvironment but at the nanoscale level crystals appear to be made up by the same subunits.

  20. Inferring processes underlying B-cell repertoire diversity.

    Science.gov (United States)

    Elhanati, Yuval; Sethna, Zachary; Marcou, Quentin; Callan, Curtis G; Mora, Thierry; Walczak, Aleksandra M

    2015-09-01

    We quantify the VDJ recombination and somatic hypermutation processes in human B cells using probabilistic inference methods on high-throughput DNA sequence repertoires of human B-cell receptor heavy chains. Our analysis captures the statistical properties of the naive repertoire, first after its initial generation via VDJ recombination and then after selection for functionality. We also infer statistical properties of the somatic hypermutation machinery (exclusive of subsequent effects of selection). Our main results are the following: the B-cell repertoire is substantially more diverse than T-cell repertoires, owing to longer junctional insertions; sequences that pass initial selection are distinguished by having a higher probability of being generated in a VDJ recombination event; somatic hypermutations have a non-uniform distribution along the V gene that is well explained by an independent site model for the sequence context around the hypermutation site. PMID:26194757

  1. Reliability-based design optimization under stationary stochastic process loads

    Science.gov (United States)

    Hu, Zhen; Du, Xiaoping

    2016-08-01

    Time-dependent reliability-based design ensures the satisfaction of reliability requirements for a given period of time, but with a high computational cost. This work improves the computational efficiency by extending the sequential optimization and reliability analysis (SORA) method to time-dependent problems with both stationary stochastic process loads and random variables. The challenge of the extension is the identification of the most probable point (MPP) associated with time-dependent reliability targets. Since a direct relationship between the MPP and reliability target does not exist, this work defines the concept of equivalent MPP, which is identified by the extreme value analysis and the inverse saddlepoint approximation. With the equivalent MPP, the time-dependent reliability-based design optimization is decomposed into two decoupled loops: deterministic design optimization and reliability analysis, and both are performed sequentially. Two numerical examples are used to show the efficiency of the proposed method.

  2. Quantum Information Processing with Delocalized Qubits under Global Control

    CERN Document Server

    Fitzsimons, J; Benjamin, S C; Jones, J A; Fitzsimons, Joseph; Xiao, Li; Benjamin, Simon C.; Jones, Jonathan A.

    2006-01-01

    Any technology for quantum information processing (QIP) must embody within it quantum bits (qubits) and maintain control of their key quantum properties of superposition and entanglement. Typical QIP schemes envisage an array of physical systems, such as electrons or nuclei, with each system representing a given qubit. For adequate control, systems must be distinguishable either by physical separation or unique frequencies, and their mutual interactions must be individually manipulable. These difficult requirements exclude many nanoscale technologies where systems are densely packed and continuously interacting. Here we demonstrate a new paradigm: restricting ourselves to global control pulses we permit systems to interact freely and continuously, with the consequence that qubits can become delocalized over the entire device. We realize this using NMR studies of three carbon-13 nuclei in alanine, demonstrating all the key aspects including a quantum mirror, one- and two-qubit gates, permutation of densely pac...

  3. Irreversible magnetic processes under biaxial and uniaxial magnetic anisotropies

    Directory of Open Access Journals (Sweden)

    S. Pokharel

    2016-05-01

    Full Text Available Irreversible magnetic processes have been investigated in magnetic systems with two different anisotropy symmetries (uniaxial and biaxial through angular measurement of the switching field, the irreversible susceptibility and the magnetic viscosity. These two systems consist of two-dimensional cobalt ferrite hetero-structures epitaxially grown on (100 and (110 MgO substrate. It is found that for uniaxial anisotropy the irreversible characteristics of the magnetization are large and display a strong angular dependence, which exhibits its maximum at the easy axis and drops quickly to vanish at the hard axis. However, for biaxial anisotropy the magnetization irreversible characteristics are considerably reduced and are less sensitive to the field angle.

  4. Healthcare professionals under pressure in involuntary admission processes.

    Science.gov (United States)

    van den Hooff, Susanne; Leget, Carlo; Goossensen, Anne

    2015-10-01

    The main objective of this paper is to describe how quality of care may be improved during an involuntary admission process of patients suffering from Korsakoff's syndrome. It presents an empirically grounded analysis with different perspectives on 'doing good' during this process. Family carers', healthcare professionals' and legal professionals' ways of understanding and ordering this problematic situation appear very different. This could prevent patients from getting the proper care they need, with risk of more suffering and quality of life below the minimum acceptable. All this possibly lead to immoral dehumanizing situations. Firstly, the background of our empirical study is sketched. Secondly, the different perspectives on 'doing good' are summarized and compared. Thirdly, the tensions arising from the different conceptualizations of autonomy and different types of responsibilities of the actors are clarified. A common 'doing good' during involuntary admission necessitates removal of any tensions within the relational network by weighing and balancing the different perspectives on autonomy and the resulting responsibilities. With this in mind, we propose a renewed time/action table for involuntary admission, which tends to address all patients' needs at the right time. The solution presented might help healthcare professionals, who are squeezed in between patients, family carers, legal professionals and overall rules, to create practices in which patients suffering from Korsakoff's syndrome can maintain their dignity and receive the care they need. Earlier interventions, timely and adequate diagnosis, and diminishment of tensions between the different actors by fine-tuning their paradigmatic frameworks are suggested to be part of a solution. PMID:26058413

  5. Boundary and mixed lubrication friction modeling under forming process conditions

    Science.gov (United States)

    Meinders, V. T.; Hol, J.; van den Boogaard, A. H.

    2013-12-01

    A multi-scale friction model for large-scale forming simulations is presented. A framework has been developed for the boundary and mixed lubrication regime, including the effect of surface changes due to normal loading, sliding and straining the underlying bulk material. Adhesion and ploughing effects have been accounted for to characterize friction conditions on the micro scale. To account for the lubricant effects special hydrodynamic contact elements have been developed. Pressure degrees of freedom are introduced to capture the pressure values which are computed by a finite element discretization of the 2D averaged Reynolds equations. The boundary friction model and the hydrodynamic friction model have been coupled to cover the boundary and mixed lubrication regime. To prove the numerical efficiency of the multi-scale friction model, finite element simulations have been carried out on a top hat section. The computed local friction coefficients show to be dependent on the punch stroke, punch speed and location in the product, and are far from constant. The location and range of friction coefficient values are in the order of what to expect from practice. The agreement between the numerical results and the experiments for different lubrication types and amount of lubrication is good. The multi-scale friction model proves to be stable, and compared to a Coulomb-based FE simulation, with only a modest increase in computation time.

  6. A differential genome-wide transcriptome analysis: impact of cellular copper on complex biological processes like aging and development.

    Directory of Open Access Journals (Sweden)

    Jörg Servos

    explain the underlying mechanisms controlling complex biological processes like aging and development.

  7. Development of a computational system for management of risks in radiosterilization processes of biological tissues

    International Nuclear Information System (INIS)

    Risk management can be understood to be a systematic management which aims to identify record and control the risks of a process. Applying risk management becomes a complex activity, due to the variety of professionals involved. In order to execute risk management the following are requirements of paramount importance: the experience, discernment and judgment of a multidisciplinary team, guided by means of quality tools, so as to provide standardization in the process of investigating the cause and effects of risks and dynamism in obtaining the objective desired, i.e. the reduction and control of the risk. This work aims to develop a computational system of risk management (software) which makes it feasible to diagnose the risks of the processes of radiosterilization of biological tissues. The methodology adopted was action-research, according to which the researcher performs an active role in the establishment of the problems found, in the follow-up and in the evaluation of the actions taken owing to the problems. The scenario of this action-research was the Laboratory of Biological Tissues (LTB) in the Radiation Technology Center IPEN/CNEN-SP - Sao Paulo/Brazil. The software developed was executed in PHP and Flash/MySQL language, the server (hosting), the software is available on the Internet (www.vcrisk.com.br), which the user can access from anywhere by means of the login/access password previously sent by email to the team responsible for the tissue to be analyzed. The software presents friendly navigability whereby the user is directed step-by-step in the process of investigating the risk up to the means of reducing it. The software 'makes' the user comply with the term and present the effectiveness of the actions taken to reduce the risk. Applying this system provided the organization (LTB/CTR/IPEN) with dynamic communication, effective between the members of the multidisciplinary team: a) in decision-making; b) in lessons learned; c) in knowing the new risk

  8. [Rome: capital of an empire under the banner of political biology (1936-1942)].

    Science.gov (United States)

    Vallejo, Gustavo

    2012-01-01

    This paper analyzes the symbolic conformation of Rome and Romanism as important factors in the affirmation of the power of fascism, especially after the proclamation of the Empire in 1936. Within this framework, it explores the role of science in legitimizing the direct correlation of this symbolic universe with a praxis that exalted racial superiority inherited from Ancient Rome. It investigates the links between the eugenic discourse and the exercise of power behind the "biology policy", including fascist organicism and racism. In fact, Rome was the essence of an empire that was reborn after fifteen centuries and, between its historical legacy and the new scenarios created by fascism for disciplining the population, Romanism had to condense all of the merits of the race, encouraging military conquests and promoting responsibility for maintaining racial purity and avoiding "unwanted miscegenation" with conquered peoples. The idea of Romanism also encouraged a continuation of the persecution of Jews started in Germany. Hence, science ratified a widespread idea of the Romanization as a crusade to impose a force, exaggerated on racial grounds, which integrated confidence in environmental factors with a crude biological determinism. PMID:22849218

  9. Open water processes of the San Francisco Estuary: From physical forcing to biological responses

    Directory of Open Access Journals (Sweden)

    Wim Kimmerer

    2004-02-01

    Full Text Available This paper reviews the current state of knowledge of the open waters of the San Francisco Estuary. This estuary is well known for the extent to which it has been altered through loss of wetlands, changes in hydrography, and the introduction of chemical and biological contaminants. It is also one of the most studied estuaries in the world, with much of the recent research effort aimed at supporting restoration efforts. In this review I emphasize the conceptual foundations for our current understanding of estuarine dynamics, particularly those aspects relevant to restoration. Several themes run throughout this paper. First is the critical role physical dynamics play in setting the stage for chemical and biological responses. Physical forcing by the tides and by variation in freshwater input combine to control the movement of the salinity field, and to establish stratification, mixing, and dilution patterns throughout the estuary. Many aspects of estuarine dynamics respond to interannual variation in freshwater flow; in particular, abundance of several estuarine-dependent species of fish and shrimp varies positively with flow, although the mechanisms behind these relationships are largely unknown. The second theme is the importance of time scales in determining the degree of interaction between dynamic processes. Physical effects tend to dominate when they operate at shorter time scales than biological processes; when the two time scales are similar, important interactions can arise between physical and biological variability. These interactions can be seen, for example, in the response of phytoplankton blooms, with characteristic time scales of days, to stratification events occurring during neap tides. The third theme is the key role of introduced species in all estuarine habitats; particularly noteworthy are introduced waterweeds and fishes in the tidal freshwater reaches of the estuary, and introduced clams there and in brackish water. The

  10. Gas transport processes in sea ice: How convection and diffusion processes might affect biological imprints, a challenge for modellers

    DEFF Research Database (Denmark)

    Tison, J.-L.; Zhou, Shaola J. G.; Thomas, D. N.;

    2012-01-01

    salts under the mushy layer brine convection process. In some cases, mainly in the early stages of the freezing process (first 10-20 cm) where temperature gradients are strong and the ice still permeable on its whole thickness, repeated convection and bubble nucleation can actually increase the gas...... within the sea ice cover, including in the gaseous form. Diffusive processes will become dominant once internal melting is strong enough to stratify the brine network within the ice. In the Kapisilit case, the regular decrease of an internal gas peak intensity due to external forcing during ice growth......Recent data from a year-round survey of landfast sea ice growth in Barrow (Alaska) have shown how O2/N2 and O2/Ar ratios could be used to pinpoint primary production in sea ice and derive net productivity rates from the temporal evolution of the oxygen concentration at a given depth within the sea...

  11. Foveal Processing Under Concurrent Peripheral Load in Profoundly Deaf Adults.

    Science.gov (United States)

    Dye, Matthew W G

    2016-04-01

    Development of the visual system typically proceeds in concert with the development of audition. One result is that the visual system of profoundly deaf individuals differs from that of those with typical auditory systems. While past research has suggested deaf people have enhanced attention in the visual periphery, it is still unclear whether or not this enhancement entails deficits in central vision. Profoundly deaf and typically hearing adults were administered a variant of the useful field of view task that independently assessed performance on concurrent central and peripheral tasks. Identification of a foveated target was impaired by a concurrent selective peripheral attention task, more so in profoundly deaf adults than in the typically hearing. Previous findings of enhanced performance on the peripheral task were not replicated. These data are discussed in terms of flexible allocation of spatial attention targeted towards perceived task demands, and support a modified "division of labor" hypothesis whereby attentional resources co-opted to process peripheral space result in reduced resources in the central visual field. PMID:26657078

  12. Pilot plant study on ozonation and biological activated carbon process for drinking water treatment

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    A study on advanced drinking water treatment was conducted in a pilot scale plant taking water from conventional treatment process. Ozonation-biological activated carbon process (O3-BAC) and granular activated carbon process (GAC) were evaluated based on the following parameters: CODMn, UV254, total organic carbon (TOC), assimilable organic carbon (AOC) and biodegradable dissolved organic carbon (BDOC). In this test, the average removal rates of CODMn , UV254 and TOC in O3-BAC were18.2%, 9.0% and 10.2% higher on (AOC) than in GAC, respectively. Ozonation increased 19.3-57.6 μg Acetate-C/L in AOC-P17,45.6-130.6 μg Acetate-C/L in AOC-NOX and 0.1-0.5 mg/L in BDOC with ozone doses of 2-8 mg/L. The optimum ozone dose for maximum AOC formation was 3 mgO3/L. BAC filtration was effective process to improve biostability.

  13. A cell-free expression and purification process for rapid production of protein biologics.

    Science.gov (United States)

    Sullivan, Challise J; Pendleton, Erik D; Sasmor, Henri H; Hicks, William L; Farnum, John B; Muto, Machiko; Amendt, Eric M; Schoborg, Jennifer A; Martin, Rey W; Clark, Lauren G; Anderson, Mark J; Choudhury, Alaksh; Fior, Raffaella; Lo, Yu-Hwa; Griffey, Richard H; Chappell, Stephen A; Jewett, Michael C; Mauro, Vincent P; Dresios, John

    2016-02-01

    Cell-free protein synthesis has emerged as a powerful technology for rapid and efficient protein production. Cell-free methods are also amenable to automation and such systems have been extensively used for high-throughput protein production and screening; however, current fluidic systems are not adequate for manufacturing protein biopharmaceuticals. In this work, we report on the initial development of a fluidic process for rapid end-to-end production of recombinant protein biologics. This process incorporates a bioreactor module that can be used with eukaryotic or prokaryotic lysates that are programmed for combined transcription/translation of an engineered DNA template encoding for specific protein targets. Purification of the cell-free expressed product occurs through a series of protein separation modules that are configurable for process-specific isolation of different proteins. Using this approach, we demonstrate production of two bioactive human protein therapeutics, erythropoietin and granulocyte-macrophage colony-stimulating factor, in yeast and bacterial extracts, respectively, each within 24 hours. This process is flexible, scalable and amenable to automation for rapid production at the point-of-need of proteins with significant pharmaceutical, medical, or biotechnological value. PMID:26427345

  14. Stabilization of Desert Surfaces and Accumulation of Dust Under Biological Soil Crusts

    Science.gov (United States)

    Finstad, K. M.; Mcnicol, G.; Pfeiffer, M.; Amundson, R.

    2014-12-01

    Biological soil crusts (BSC) are known to play a critical role in the stabilization of desert surfaces by helping to protect sediment from wind and water erosion and aiding in the trapping of airborne particles. The crusts are often composed of cyanobacteria, algae, and fungi, and occupy the upper few cm of a soil. Due to their high tolerance of desiccation and ability to utilize fog and dew sources, BSC are able to exist in environments that may otherwise be too dry for vascular plants. In the hyperarid Atacama Desert, decades or more between measurable precipitation events has created a landscape devoid of macroscopic life. While precipitation is rare, coastal fog occurs regularly and microbial communities capable of utilizing fog and dew water are able to persist. Here we found cyanobacteria and lichen living in association with a thin sulfate and dust crust (~2 cm) covering the surface of 'dust plateaus'. Topographically the region is highly irregular and part of a largely erosional landscape. We hypothesized that these flat-topped plateaus are accretionary features that have been able to maintain dust accumulation for thousands of years as a result of the surface crusts. To test this hypothesis we conducted radiocarbon analysis of crusts and soil profiles at two sites approximately 30 km apart, one in a high fog zone and another in lower fog frequency zone. The radiocarbon analysis shows that sediment has been accumulating in the 'plateaus' for the past 15,000 years and that biological activity and rates of C cycling in the crust increase with increasing fog frequency and intensity. The ages of organic material in the dust decrease monotonically with decreasing soil thickness, suggestive of progressive upward growth by dust accumulation. Our data indicate that the BSC are capable of surviving in hyperarid the Atacama Desert, a Mars analogue, through the utilization of fog water, and that their presence can leave a visible geomorphic imprint on the landscape.

  15. [Study on bio-contact oxidation A/O process of Guanting Reservior water under low temperature].

    Science.gov (United States)

    He, Xing-hai; Wu, Jiang-jin; Chang, Li-chun; Wei, Shu-jun; Ke, Jian-ming

    2004-01-01

    The results of the experiments showed that biological contact A/O process could run steadily under low temperature and had better removal effect for ammonia nitrogen and had some removal effect for COD and TN from water of Guanting Reservoir. When the temperature dropped greatly, removal ratio of ammonia nitrogen dropped evidently, but gradually rose and remained at high removal level at last. Under the conditions of the experiment that the temperature was 0-5 degrees C and influent ammonia nitrogen was about 10 mg/L, ammonia nitrogen removal rate remained more than 95% at last. The change of temperature had no evident influence on removal effect of COD. And the conclusion could be got by microscope that under the temperature at 0-5 degrees C the microorganism in the biofilm still had a good activity. PMID:15330431

  16. COD FRACTIONS IN THE PROCESS OF MECHANICAL-BIOLOGICAL TREATMENT SEWAGE

    Directory of Open Access Journals (Sweden)

    Joanna Smyk

    2015-11-01

    Full Text Available The aim of the research was to determine the COD fraction thereof in sewage and their changes in the effluent after further treatment processes. The study was conducted in a sewage treatment plant in Bialystok (RLM> 100000. In sewage the highest concentrations occurred in the suspension of the organic fractions slowly biodegradable XS (303.7 mg O2/l and dissolved organic compounds readily biodegradable SS (263 mg O2/l. The lower amounts were irreducible fractions dissolved in sewage and suspended SI (56 mg O2/l and XI (101.2 mg O2/l. Almost 80% of the total COD fractions were biodegradable (SS + XS. In the treated wastewater soluble fraction SI-biodegradable (56 mg O2/l occurred in the highest concentration. The flow of wastewater by components of sewage treatment plant resulted the complete removal of biologically degradable fraction of dissolved SS. More than 94.5% of the total COD in waste water purified fractions were biologically decomposable (SI + XI. Moreover, based on the analysis of studies the following soil removal was found: BOD5 – 99.4%, COD – 92.9%, total nitrogen – 93.4%, total phosphorus – 92%. After waste water treatment, ammonia nitrogen was completely removed while the nitrate concentration increased to 4.6 mg N/dm3.

  17. Application of chemical, biological and membrane separation processes in textile industry with recourse to zero effluent discharge--a case study.

    Science.gov (United States)

    Nandy, T; Dhodapkar, R S; Pophali, G R; Kaul, S N; Devotta, S

    2005-09-01

    Environmental concerns associated with textile processing had placed the textile sector in a Southern State of India under serious threat of survival. The textile industries were closed under the orders of the Statutory Board for reason of inadequate compliance to environmental discharge norms of the State for the protection of the drinking water source of the State capital. In compliance with the direction of the Board for zero effluent discharge, advanced treatment process have been implemented for recovery of boiler feed quality water with recourse to effluent recycling/reuse. The paper describes to a case study on the adequacy assessment of the full scale effluent treatment plant comprising chemical, biological and filtration processes in a small scale textile industry. In addition, implementation of measures for discernable improvement in the performance of the existing units through effective operation & maintenance, and application of membrane separation processes leading to zero effluent discharge is also highlighted. PMID:16196413

  18. Assessment of the removal of estrogenicity in biological nutrient removal wastewater treatment processes

    International Nuclear Information System (INIS)

    The removal of estrogenicity in a University of Cape Town-biological nutrient removal (UCT-BNR) wastewater treatment process was investigated using pilot and bench scale systems, batch experiments and mathematical modeling. In the pilot BNR process, 96 ± 5% of the estrogenicity exerted by the influent wastewater was removed by the treatment process. The degradation efficiencies in the anaerobic, anoxic and aerobic zones of the pilot BNR bioreactor were 11 ± 9%, 18 ± 2% and 93 ± 10%, respectively. In order to further understand the performance of the BNR process in the removal of estrogenicity from wastewater, a bench scale BNR process was operated with synthetic wastewater dosed with E1 and E2. The removal of estrogenicity in the bench scale system (95 ± 5%) was comparable to the pilot BNR process and the degradation efficiencies were estimated to be 8 ± 0.8%, 38 ± 4% and 85 ± 22% in the anaerobic, anoxic and aerobic zones, respectively. A biotransformation model developed to predict the fate of E1 and E2 in batch tests using the sludge from the BNR process was calibrated using the data from the experiments. The biotransformation rate constants for the transformation of E2 to E1 were estimated as 71 ± 1.5, 31 ± 3.3 and 1 ± 0.9 L g COD−1 d−1 for the aerobic, anoxic and anaerobic batch tests, respectively, while the corresponding biotransformation rate constants for the transformation of E1 were estimated to be 7.3 ± 1.0, 3 ± 2.0, and 0.85 ± 0.6 L·g COD−1 d−1. A steady state mass balance model formulated to describe the interactions between E2 and E1 in BNR activated sludge reasonably described the fate of E1 and E2 in the BNR process. - Highlights: • Comparable estrogenicity removal was observed from two BNR processes. • Pseudo first order model described the transformation of E2 and E1 in BNR process. • Biotransformation of E1 in BNR activated sludge controls the degradation of E2

  19. Assessment of the removal of estrogenicity in biological nutrient removal wastewater treatment processes

    Energy Technology Data Exchange (ETDEWEB)

    Ogunlaja, O.O., E-mail: oogunlaj@uwaterloo.ca; Parker, W.J., E-mail: wjparker@uwaterloo.ca

    2015-05-01

    The removal of estrogenicity in a University of Cape Town-biological nutrient removal (UCT-BNR) wastewater treatment process was investigated using pilot and bench scale systems, batch experiments and mathematical modeling. In the pilot BNR process, 96 ± 5% of the estrogenicity exerted by the influent wastewater was removed by the treatment process. The degradation efficiencies in the anaerobic, anoxic and aerobic zones of the pilot BNR bioreactor were 11 ± 9%, 18 ± 2% and 93 ± 10%, respectively. In order to further understand the performance of the BNR process in the removal of estrogenicity from wastewater, a bench scale BNR process was operated with synthetic wastewater dosed with E1 and E2. The removal of estrogenicity in the bench scale system (95 ± 5%) was comparable to the pilot BNR process and the degradation efficiencies were estimated to be 8 ± 0.8%, 38 ± 4% and 85 ± 22% in the anaerobic, anoxic and aerobic zones, respectively. A biotransformation model developed to predict the fate of E1 and E2 in batch tests using the sludge from the BNR process was calibrated using the data from the experiments. The biotransformation rate constants for the transformation of E2 to E1 were estimated as 71 ± 1.5, 31 ± 3.3 and 1 ± 0.9 L g COD{sup −1} d{sup −1} for the aerobic, anoxic and anaerobic batch tests, respectively, while the corresponding biotransformation rate constants for the transformation of E1 were estimated to be 7.3 ± 1.0, 3 ± 2.0, and 0.85 ± 0.6 L·g COD{sup −1} d{sup −1}. A steady state mass balance model formulated to describe the interactions between E2 and E1 in BNR activated sludge reasonably described the fate of E1 and E2 in the BNR process. - Highlights: • Comparable estrogenicity removal was observed from two BNR processes. • Pseudo first order model described the transformation of E2 and E1 in BNR process. • Biotransformation of E1 in BNR activated sludge controls the degradation of E2.

  20. 78 FR 70088 - Agency Proposed Business Process Vision Under the Rehabilitation Act of 1973

    Science.gov (United States)

    2013-11-22

    ... From the Federal Register Online via the Government Publishing Office SOCIAL SECURITY ADMINISTRATION Agency Proposed Business Process Vision Under the Rehabilitation Act of 1973 AGENCY: Social Security Administration (SSA). ACTION: Notice of availability of proposed business process vision...

  1. Apparatus and process to eliminate diffusional limitations in a membrane biological reactor by pressure cycling

    Science.gov (United States)

    Efthymiou, George S.; Shuler, Michael L.

    1989-08-29

    An improved multilayer continuous biological membrane reactor and a process to eliminate diffusional limitations in membrane reactors in achieved by causing a convective flux of nutrient to move into and out of an immobilized biocatalyst cell layer. In a pressure cycled mode, by increasing and decreasing the pressure in the respective layers, the differential pressure between the gaseous layer and the nutrient layer is alternately changed from positive to negative. The intermittent change in pressure differential accelerates the transfer of nutrient from the nutrient layers to the biocatalyst cell layer, the transfer of product from the cell layer to the nutrient layer and the transfer of byproduct gas from the cell layer to the gaseous layer. Such intermittent cycling substantially eliminates mass transfer gradients in diffusion inhibited systems and greatly increases product yield and throughput in both inhibited and noninhibited systems.

  2. The biological role of a-ketoglutaric acid in physiological processes and its therapeutic potential.

    Science.gov (United States)

    Grzesiak, Paulina; Słupecka-Ziemilska, Monika; Woliński, Jarosław

    2016-01-01

    In this article we present the results of recent studies on the mechanism of action and biological role of α-ketoglutaric acid (AKG) in animals including developmental period of life. AKG is an intermediate in the Krebs cycle, which generates energy for life processes. Administration of AKG has been shown to be beneficial for proper development and function of the skeletal system during growth of young organisms, as well as in adulthood. In the form of a dietary supplement it also contributes to inhibition of osteoporosis in women. Moreover, it promotes the growth of muscle mass and accelerates wound healing. AKG has a significant impact on the morphology of the gastrointestinal tract in healthy animals and animals with damaged gastrointestinal tract mucosa. It is also a promising substance for the treatment of patients with short bowel syndrome, as it stimulates beneficial changes in intestinal morphology. Recent research has also revealed that AKG has neuroprotective effects. PMID:27416627

  3. Fate of dissolved organic nitrogen during biological nutrient removal wastewater treatment processes.

    Science.gov (United States)

    Liu, Bing; Lin, Huirong; Yu, Guozhong; Zhang, Shenghua; Zhao, Chengmei

    2013-04-01

    Due to its potential to form toxic nitrogenous disinfection byproducts (N-DBPs), dissolved organic nitrogen (DON) is considered as one of the most important parameters in wastewater treatment plants (WWTP). This study describes a comprehensive investigation of variations in DON levels in orbal oxidation ditches. The results showed that DON increased gradually from 0.71 to 1.14 mg I(-1) along anaerobic zone, anoxic zone, aerobic zone 1 and aerobic 2. Molecular weight fractionation of DON in one anaerobic zone and one aerobic zone (aerobic zone 2) was performed. We found that the proportion of small molecular weight ( 20 kDa) showed opposite trend. This variation may have been caused due to the release of different types of soluble microbial products (SMPs) during biological processes. These SMPs contained both tryptophan protein-like and aromatic protein-like substances, which were confirmed by three-dimensional excitation-emission matrix (EEM) analysis. PMID:24620601

  4. Molecular imaging with radionuclides, a powerful technique for studying biological processes in vivo

    Science.gov (United States)

    Cisbani, E.; Cusanno, F.; Garibaldi, F.; Magliozzi, M. L.; Majewski, S.; Torrioli, S.; Tsui, B. M. W.

    2007-02-01

    Our team is carrying on a systematic study devoted to the design of a SPECT detector with submillimeter resolution and adequate sensitivity (1 cps/kBq). Such system will be used for functional imaging of biological processes at molecular level in small animal. The system requirements have been defined by two relevant applications: study of atherosclerotic plaques characterization and stem cells diffusion and homing. In order to minimize costs and implementation time, the gamma detector will be based—as much as possible—on conventional components: scintillator crystal and position sensitive PhotoMultipliers read by individual channel electronics. A coded aperture collimator should be adapted to maximize the efficiency. The optimal selection of the detector components is investigated by systematic use of Monte-Carlo simulations (and laboratory validation tests); and finally preliminary results are presented and discussed here.

  5. Importance of Translational Entropy of Water in Biological Self-Assembly Processes like Protein Folding

    Directory of Open Access Journals (Sweden)

    Masahiro Kinoshita

    2009-03-01

    Full Text Available We briefly review our studies on the folding/unfolding mechanisms of proteins. In biological self-assembly processes such as protein folding, the number of accessible translational configurations of water in the system increases greatly, leading to a large gain in the water entropy. The usual view looking at only the water in the close vicinity of the protein surface is capable of elucidating neither the large entropic gain upon apoplastocyanin folding, which has recently been found in a novel experimental study, nor the pressure and cold denaturation. With the emphasis on the translational entropy of water, we are presently constructing a reliable method for predicting the native structure of a protein from its amino-acid sequence.

  6. Insights into biological information processing: structural and dynamical analysis of a human protein signalling network

    International Nuclear Information System (INIS)

    We present an investigation on the structural and dynamical properties of a 'human protein signalling network' (HPSN). This biological network is composed of nodes that correspond to proteins and directed edges that represent signal flows. In order to gain insight into the organization of cell information processing this network is analysed taking into account explicitly the edge directions. We explore the topological properties of the HPSN at the global and the local scale, further applying the generating function formalism to provide a suitable comparative model. The relationship between the node degrees and the distribution of signals through the network is characterized using degree correlation profiles. Finally, we analyse the dynamical properties of small sub-graphs showing high correlation between their occurrence and dynamic stability

  7. Composting of biological waste. Processes and utilisation. Summary report; Bioabfallkompostierung. Verfahren und Verwertung. Kurzfassung

    Energy Technology Data Exchange (ETDEWEB)

    Gronauer, A.; Claassen, N.; Ebertseder, T.; Fischer, P.; Gutser, R.; Helm, M.; Popp, L.; Schoen, H.

    1997-12-31

    The project investigated environmentally compatible concepts for processing and utilisation of biological waste by means of composting and spreading on agriculataural and gardening plots. The project comprised three parts: Composting techniques, applications of compost in agriculture and gardening, and applications in landscaping. This volume comprises the summaries of the three part-projects. (orig./SR) [Deutsch] Die umweltschonende Aufbereitung und Verwertung von Bioabfall durch Kompostierung und Rueckfuehrung auf landwirtschaftliche und gaertnerische Flaechen wurde untersucht. Dieses Projekt war dreigeteilt in die Bereiche der Kompostierung selbst, der Anwendung des Komposts in der Landwirtschaft und seiner Anwendung im Gartenbau sowie im Garten- und Landschaftsbau (GaLa-Bau). Die vorliegende Schrift enthaelt die Zusammenfassung der genannten drei Teilberichte. (orig./SR)

  8. Destruction of explosives in groundwater and process water using photocatalytic and biological methods

    Energy Technology Data Exchange (ETDEWEB)

    Rodacy, P.J.; Leslie, P.K.; Prairie, M.R. [and others

    1996-04-01

    The environmentally safe destruction of pinkwater is a significant problem that requires a multidisciplinary approach to solve. We have investigated the application of advanced oxidation processes, including the use of both UV light source and laser technologies. The reactions were run under both oxidizing and reducing atmospheres. Aerobic and anaerobic biotreatments were examined as both pre- and post-treatments to the oxidation processes. The toxicity of the wastewater at various stages of treatment was determined. Membrane preconcentration schemes were examined to determine their effectiveness as part of the total pinkwater treatment scheme.

  9. Biological processes for concentrating trace elements from uranium mine waters. Technical completion report

    International Nuclear Information System (INIS)

    Waste water from uranium mines in the Ambrosia Lake district near Grants, New Mexico, USA, contains uranium, selenium, radium and molybdenum. The Kerr-McGee Corporation has a novel treatment process for waters from two mines to reduce the concentrations of the trace contaminants. Particulates are settled by ponding, and the waters are passed through an ion exchange resin to remove uranium; barium chloride is added to precipitate sulfate and radium from the mine waters. The mine waters are subsequently passed through three consecutive algae ponds prior to discharge. Water, sediment and biological samples were collected over a 4-year period and analyzed to assess the role of biological agents in removal of inorganic trace contaminants from the mine waters. Some of the conclusions derived from this study are: (1) The concentrations of soluble uranium, selenium and molybdenum were not diminished in the mine waters by passage through the series of impoundments which constituted the mine water treatment facility. Uranium concentrations were reduced but this was due to passage of the water through an ion exchange column. (2) The particulate concentrations of the mine water were reduced at least ten-fold by passage of the waters through the impoundments. (3) The sediments were anoxic and enriched in uranium, molybdenum and selenium. The deposition of particulates and the formation of insoluble compounds were proposed as mechanisms for sediment enrichment. (4) The predominant algae of the treatment ponds were the filamentous Spirogyra and Oscillatoria, and the benthic alga, Chara. (5) Adsorptive processes resulted in the accumulation of metals in the algae cells. (6) Stimulation of sulfate reduction by the bacteria resulted in retention of molybdenum, selenium, and uranium in sediments. 1 figure, 16 tables

  10. Ozone-biological activated carbon as a pretreatment process for reverse osmosis brine treatment and recovery.

    Science.gov (United States)

    Lee, Lai Yoke; Ng, How Yong; Ong, Say Leong; Hu, Jiang Yong; Tao, Guihe; Kekre, Kiran; Viswanath, Balakrishnan; Lay, Winson; Seah, Harry

    2009-09-01

    Ozonation was used in this study to improve biodegradability of RO brine from water reclamation facilities. An ozone dosage ranging from 3 to 10 mg O(3)/L and contact times of 10 and 20 min in batch studies were found to increase the biodegradability (BOD(5)/TOC ratio) of the RO brine by 1.8-3.5 times. At the same time, total organic carbon (TOC) removal was in the range of 5.3-24.5%. The lab-scale ozone-biological activated carbon (BAC) at an ozone dosage of 6.0mg O(3)/L with 20-min contact time was able to achieve 3 times higher TOC removal compared to using BAC alone. Further processing with Capacitive Deionization (CDI) process was able to generate a product water with better water quality than the RO feed water, i.e., with more than 80% ions removal and a lower TOC concentration. The ozone-BAC pretreatment has the potential of reducing fouling in the CDI process. PMID:19580984

  11. Coking wastewater treatment for industrial reuse purpose: combining biological processes with ultrafiltration, nanofiltration and reverse osmosis.

    Science.gov (United States)

    Jin, Xuewen; Li, Enchao; Lu, Shuguang; Qiu, Zhaofu; Sui, Qian

    2013-08-01

    A full-scale plant using anaerobic, anoxic and oxic processes (A1/A2/O), along with a pilot-scale membrane bioreactor (MBR), nanofiltration (NF) and reverse osmosis (RO) integrated system developed by Shanghai Baosteel Chemical Co. Ltd., was investigated to treat coking wastewater for industrial reuse over a period of one year. The removals reached 82.5% (COD), 89.6% (BOD), 99.8% (ammonium nitrogen), 99.9% (phenol), 44.6% (total cyanide (T-CN)), 99.7% (thiocyanide (SCN-)) and 8.9% (fluoride), during the A1/A2/O biological treatment stage, and all parameters were further reduced by over 96.0%, except for fluoride (86.4%), in the final discharge effluent from the currently operating plant. The pilot-scale MBR process reduced the turbidity to less than 0.65 NTU, and most of the toxic organic compounds were degraded or intercepted by the A1/A2/O followed MBR processes. In addition, parameters including COD, T-CN, total nitrogen, fluoride, chloride ion, hardness and conductivity were significantly reduced by the NF-RO system to a level suitable for industrial reuse, with a total water production ratio of 70.7%. However, the concentrates from the NF and RO units were highly polluted and should be disposed of properly or further treated before being discharged. PMID:24520694

  12. Micro-processing of polymers and biological materials using high repetition rate femtosecond laser pulses

    Science.gov (United States)

    Ding, Li

    has been observed in or around the laser-induced refractive index modification regions. These results support the notion that femtosecond laser micro-processing method may be an excellent means of altering the refraction or higher order aberration content of corneal tissue without cell death and short-term tissue damage, and has been named as Intra-tissue Refractive Index Shaping (IRIS). The femtosecond laser micro-processing workstation has also been employed for laser transfection of single defined cells. Some preliminary results suggest that this method can be used to trace individual cells and record their biological and morphological evolution, which is quite promising in many biomedical applications especially in immunology science. In conclusion, high repetition rate femtosecond laser micro-processing has been employed to fabricate microstructures in ophthalmological hydrogels and ocular tissues. Its unique three-dimensional capability over transparent materials and biological media makes it a powerful tool and will greatly impact the future of laser material-processing.

  13. Degradation of benzalkonium chloride coupling photochemical advanced oxidation technologies with biological processes

    International Nuclear Information System (INIS)

    The combination of Advanced Oxidation Technologies (AOTs) and biological processes can be visualized as a very successful technological option for treatment of effluents, because it combines high oxidizing technologies with a conventional, low-cost and well-established treatment technology.Photochemical AOTs, like UV-C with or without H2O2, photo-Fenton (PF, UV/H2O2/Fe(II-III)) and UV/TiO2 heterogeneous photo catalysis involve the generation and use of powerful oxidizing species, mainly the hydroxyl radical.In almost all AOTs, it is possible to use sunlight. Benzalkonium chloride (dodecyldimetylbencylammonium chloride, BKC) is a widely used surfactant, which has many industrial applications.Due to its antibacterial effect, it cannot be eliminated from effluents by a biological treatment, and the complexity of its chemical structure makes necessary the use of drastic oxidizing treatments to achieve complete mineralization and to avoid the formation of byproducts even more toxic than the initial compound.In this study, different alternatives for BKC treatment using photochemical AOTs followed by bio catalytic techniques are presented.Three AOTs were tested: a) UV-C (254 nm, germicide lamp) with and without H2O2, b) PF (366 nm), c) UV/TiO2 (254 and 366 nm). PF at a 15:1:1 H2O2total/BKC0/Fe0 molar ratio at 55 degree C was the most efficient treatment in order to decrease the tensioactivity and the total organic carbon of the solution . The biocatalysis was studied in a reactor fitted with a biofilm of microorganisms coming from a sludge-water treatment plant. To evaluate the maximal BKC concentration that could be allowed to ingress to the biological reactor after the AOT treatment, the toxicity of solutions of different BKC concentrations was analyzed. The study of the relevant parameters of both processes and their combination allowed to establish the preliminary conditions for optimizing the pollutant degradation

  14. Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions.

    Science.gov (United States)

    Law, Yingyu; Kirkegaard, Rasmus Hansen; Cokro, Angel Anisa; Liu, Xianghui; Arumugam, Krithika; Xie, Chao; Stokholm-Bjerregaard, Mikkel; Drautz-Moses, Daniela I; Nielsen, Per Halkjær; Wuertz, Stefan; Williams, Rohan B H

    2016-01-01

    Management of phosphorus discharge from human waste is essential for the control of eutrophication in surface waters. Enhanced biological phosphorus removal (EBPR) is a sustainable, efficient way of removing phosphorus from waste water without employing chemical precipitation, but is assumed unachievable in tropical temperatures due to conditions that favour glycogen accumulating organisms (GAOs) over polyphosphate accumulating organisms (PAOs). Here, we show these assumptions are unfounded by studying comparative community dynamics in a full-scale plant following systematic perturbation of operational conditions, which modified community abundance, function and physicochemical state. A statistically significant increase in the relative abundance of the PAO Accumulibacter was associated with improved EBPR activity. GAO relative abundance also increased, challenging the assumption of competition. An Accumulibacter bin-genome was identified from a whole community metagenomic survey, and comparative analysis against extant Accumulibacter genomes suggests a close relationship to Type II. Analysis of the associated metatranscriptome data revealed that genes encoding proteins involved in the tricarboxylic acid cycle and glycolysis pathways were highly expressed, consistent with metabolic modelling results. Our findings show that tropical EBPR is indeed possible, highlight the translational potential of studying competition dynamics in full-scale waste water communities and carry implications for plant design in tropical regions. PMID:27193869

  15. Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions

    Science.gov (United States)

    Law, Yingyu; Kirkegaard, Rasmus Hansen; Cokro, Angel Anisa; Liu, Xianghui; Arumugam, Krithika; Xie, Chao; Stokholm-Bjerregaard, Mikkel; Drautz-Moses, Daniela I.; Nielsen, Per Halkjær; Wuertz, Stefan; Williams, Rohan B. H.

    2016-01-01

    Management of phosphorus discharge from human waste is essential for the control of eutrophication in surface waters. Enhanced biological phosphorus removal (EBPR) is a sustainable, efficient way of removing phosphorus from waste water without employing chemical precipitation, but is assumed unachievable in tropical temperatures due to conditions that favour glycogen accumulating organisms (GAOs) over polyphosphate accumulating organisms (PAOs). Here, we show these assumptions are unfounded by studying comparative community dynamics in a full-scale plant following systematic perturbation of operational conditions, which modified community abundance, function and physicochemical state. A statistically significant increase in the relative abundance of the PAO Accumulibacter was associated with improved EBPR activity. GAO relative abundance also increased, challenging the assumption of competition. An Accumulibacter bin-genome was identified from a whole community metagenomic survey, and comparative analysis against extant Accumulibacter genomes suggests a close relationship to Type II. Analysis of the associated metatranscriptome data revealed that genes encoding proteins involved in the tricarboxylic acid cycle and glycolysis pathways were highly expressed, consistent with metabolic modelling results. Our findings show that tropical EBPR is indeed possible, highlight the translational potential of studying competition dynamics in full-scale waste water communities and carry implications for plant design in tropical regions. PMID:27193869

  16. Biology and predatory potential of coccinella septempunctata linn. on schizaphis graminum aphid under controlled conditions

    International Nuclear Information System (INIS)

    The biology and predatory potential of Coccinella septempunctata (Linn.) were studied on aphid, Schizaphis graminum (Rondani) at three constant temperatures 20+-1 degree C, 25+-1 degree C and 30+-1 degree C in Insectary-Bio Control Laboratories, National Agricultural Research Centre (NARC), Islamabad. The results revealed that incubation period of C. septempunctata was 5.12, 3.62 and 3.20 days with 75.6%, 82.0% and 71.2% hatchability, respectively. The larval durations were 29.5, 15.9 and 8.1 days with predatory potential of 573.7, 575.0 and 667.8 aphids per larvae. The results indicated that with increasing temperature, develop-mental duration decreases significantly. The pupal developmental duration was 14.0, 9.2 and 5.2 days, respectively which are significantly different from each other. The adult male and female longevity were 44.7, 37.7, 30.0 and 60.3, 58.9 and 43.7 days. Fecundity rate of females were 123.5, 251.5 and 293.2 eggs per female, respectively. This indicates that adult male and female developmental duration, female fecundity rate were significantly different from each other at three constant temperatures. Maximum female and male predatory potential was 3262.8 and 2571.7 aphids at 25 +-1 degree C while minimum was 2276.8 and 1890.6 aphids, respectively. (author)

  17. Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions

    Science.gov (United States)

    Law, Yingyu; Kirkegaard, Rasmus Hansen; Cokro, Angel Anisa; Liu, Xianghui; Arumugam, Krithika; Xie, Chao; Stokholm-Bjerregaard, Mikkel; Drautz-Moses, Daniela I.; Nielsen, Per Halkjær; Wuertz, Stefan; Williams, Rohan B. H.

    2016-05-01

    Management of phosphorus discharge from human waste is essential for the control of eutrophication in surface waters. Enhanced biological phosphorus removal (EBPR) is a sustainable, efficient way of removing phosphorus from waste water without employing chemical precipitation, but is assumed unachievable in tropical temperatures due to conditions that favour glycogen accumulating organisms (GAOs) over polyphosphate accumulating organisms (PAOs). Here, we show these assumptions are unfounded by studying comparative community dynamics in a full-scale plant following systematic perturbation of operational conditions, which modified community abundance, function and physicochemical state. A statistically significant increase in the relative abundance of the PAO Accumulibacter was associated with improved EBPR activity. GAO relative abundance also increased, challenging the assumption of competition. An Accumulibacter bin-genome was identified from a whole community metagenomic survey, and comparative analysis against extant Accumulibacter genomes suggests a close relationship to Type II. Analysis of the associated metatranscriptome data revealed that genes encoding proteins involved in the tricarboxylic acid cycle and glycolysis pathways were highly expressed, consistent with metabolic modelling results. Our findings show that tropical EBPR is indeed possible, highlight the translational potential of studying competition dynamics in full-scale waste water communities and carry implications for plant design in tropical regions.

  18. Water regime of mechanical-biological pretreated waste materials under fast-growing trees.

    Science.gov (United States)

    Rüth, Björn; Lennartz, Bernd; Kahle, Petra

    2007-10-01

    In this study mechanical-biological pre-treated waste material (MBP) was tested for suitability to serve as an alternative surface layer in combination with fast-growing and water-consumptive trees for final covers at landfill sites. The aim was to quantify evapotranspiration and seepage losses by numerical model simulations for two sites in Germany. In addition, the leaf area index (LAI) of six tree species over the growing season as the driving parameter for transpiration calculations was determined experimentally. The maximum LAI varied between 3.8 and 6.1 m2 m(-2) for poplar and willow clones, respectively. The evapotranspiration calculations revealed that the use of MBP waste material for re-cultivation enhanced evapotranspiration by 40 mm year(-1) (10%) over an 11 year calculation period compared to a standard mineral soil. Between 82% (for LAI(max) = 3.8) and 87% (for LAI(max) = 6.1) of the average annual precipitation (506 mm) could be retained from the surface layer assuming eastern German climate conditions, compared with a retention efficiency between 79 and 82% for a mineral soil. Although a MBP layer in conjunction with water-consumptive trees can reduce vertical water losses as compared to mineral substrates, the effect is not sufficient to meet legal regulations. PMID:17985666

  19. Biological control of Striga hermonthica (Del.) Benth. using formulated mycoherbicides under Sudan field conditions

    OpenAIRE

    Zahran, Eldur

    2008-01-01

    Striga hermonthica is a parasitic flowering plant belonging to the family Orobanchaceae. It is a root parasite that attacks sorghum, maize, millet and several grass weeds in the semi-arid Tropics. In Sudan, Striga is widespread in irrigated and rainfed areas and considered the main biotic constraint in production of sorghum, the main staple food for the majority of Sudanese people. More than 500,000 hectares under rainfed cultivation are heavily infested with Striga, which commonly results in...

  20. Biological treatment of sulfidic spent caustics under haloalkaline conditions using soda lake bacteria

    NARCIS (Netherlands)

    Graaff, de C.M.

    2012-01-01

    In this thesis, the development of a newbiotechnological process for the treatment of undiluted sulfidic spent caustics (SSC’s) using soda lake bacteria is described. SSC’s are waste solutions that are formed in the oil and gas industry due to the caustic (NaOH) scrubbing of hydrocarbon

  1. A Theory of the Visual System Biology Underlying Development of Spatial Frequency Lateralization

    Science.gov (United States)

    Howard, Mary F.; Reggia, James A.

    2007-01-01

    The spatial frequency hypothesis contends that performance differences between the hemispheres on various visuospatial tasks are attributable to lateralized processing of the spatial frequency content of visual stimuli. Hellige has proposed that such lateralization could arise during infant development from the earlier maturation of the right…

  2. Biological diversity of copepods and cladocerans in Mediterranean temporary ponds under periods of contrasting rainfall

    Directory of Open Access Journals (Sweden)

    Maria-José BOAVIDA

    2010-02-01

    of including this little known, albeit unique, biological diversity when evaluating Mediterranean temporary ponds to conservation purposes.

  3. Behavior of pulsed laser deposited hydroxyapatite thin films under simulated biological conditions

    Science.gov (United States)

    Grigorescu, S.; Sima, F.; Axente, E.; Feugeas, F.; Mihailescu, I. N.

    2007-03-01

    In the present paper, a study concerning the in-vitro behaviour of Hydroxyapatite films obtained by Pulsed Laser Deposition technique on titanium under different conditions was performed. The structures were immersed in Hank's Solution for 21 days in accurately controlled environment conditions. Both film and immersion solution changes were analyzed by means of XRD, SEM, EDX and X-Ray fluorescence respectively. The obtained results point to an excellent behaviour of the obtained films as bioactive structures, recommending this type of covering for further analysis in view of its use in orthopedic and dental implantology.

  4. Expanding biological data standards development processes for US IOOS: visual line transect observing community for mammal, bird, and turtle data

    Science.gov (United States)

    Fornwall, M.; Gisiner, R.; Simmons, S. E.; Moustahfid, Hassan; Canonico, G.; Halpin, P.; Goldstein, P.; Fitch, R.; Weise, M.; Cyr, N.; Palka, D.; Price, J.; Collins, D.

    2012-01-01

    The US Integrated Ocean Observing System (IOOS) has recently adopted standards for biological core variables in collaboration with the US Geological Survey/Ocean Biogeographic Information System (USGS/OBIS-USA) and other federal and non-federal partners. In this Community White Paper (CWP) we provide a process to bring into IOOS a rich new source of biological observing data, visual line transect surveys, and to establish quality data standards for visual line transect observations, an important source of at-sea bird, turtle and marine mammal observation data. The processes developed through this exercise will be useful for other similar biogeographic observing efforts, such as passive acoustic point and line transect observations, tagged animal data, and mark-recapture (photo-identification) methods. Furthermore, we suggest that the processes developed through this exercise will serve as a catalyst for broadening involvement by the larger marine biological data community within the goals and processes of IOOS.

  5. Production and packaging of a biological arsenal: Evolution of centipede venoms under morphological constraint

    OpenAIRE

    Undheim, Eivind A.B.; Hamilton, Brett R.; Kurniawan, Nyoman D.; Bowlay, Greg; Cribb, Bronwen W.; Merritt, David J.; Fry, Bryan G; Glenn F. King; Venter, Deon J.

    2015-01-01

    Venom peptides have attracted considerable attention because of their value as pharmacological tools and their potential for development as novel pharmaceuticals and bioinsecticides. There is also a growing interest in venoms as model evolutionary systems, particularly for understanding antagonistic coevolutionary processes. We previously demonstrated that although centipede venoms are rich in novel proteins and peptides, there are considerable differences in venom complexity between high-ord...

  6. A compact and versatile microfluidic probe for local processing of tissue sections and biological specimens

    Science.gov (United States)

    Cors, J. F.; Lovchik, R. D.; Delamarche, E.; Kaigala, G. V.

    2014-03-01

    The microfluidic probe (MFP) is a non-contact, scanning microfluidic technology for local (bio)chemical processing of surfaces based on hydrodynamically confining nanoliter volumes of liquids over tens of micrometers. We present here a compact MFP (cMFP) that can be used on a standard inverted microscope and assist in the local processing of tissue sections and biological specimens. The cMFP has a footprint of 175 × 100 × 140 mm3 and can scan an area of 45 × 45 mm2 on a surface with an accuracy of ±15 μm. The cMFP is compatible with standard surfaces used in life science laboratories such as microscope slides and Petri dishes. For ease of use, we developed self-aligned mounted MFP heads with standardized "chip-to-world" and "chip-to-platform" interfaces. Switching the processing liquid in the flow confinement is performed within 90 s using a selector valve with a dead-volume of approximately 5 μl. We further implemented height-compensation that allows a cMFP head to follow non-planar surfaces common in tissue and cellular ensembles. This was shown by patterning different macroscopic copper-coated topographies with height differences up to 750 μm. To illustrate the applicability to tissue processing, 5 μm thick M000921 BRAF V600E+ melanoma cell blocks were stained with hematoxylin to create contours, lines, spots, gradients of the chemicals, and multiple spots over larger areas. The local staining was performed in an interactive manner using a joystick and a scripting module. The compactness, user-friendliness, and functionality of the cMFP will enable it to be adapted as a standard tool in research, development and diagnostic laboratories, particularly for the interaction with tissues and cells.

  7. Giant enhancement of fluctuation in small biological systems under external fields

    Science.gov (United States)

    Hayashi, Kumiko; Hasegawa, Shin; Tsunoda, Satoshi P.

    2016-05-01

    The giant enhancement (GE) of fluctuation under an external field is a universal phenomenon predicted by the theoretical analysis given in (Reimann et al 2001 Phys. Rev. Lett.). Here, we propose the application of the theory of the GE of fluctuation to estimate the energy barrier of a biomolecule that exhibits its function subject to thermal noise. The rotary motor protein F1 was used as a model, which is a component of FoF1 adenosine triphosphate (ATP)-synthase. In the single-molecule experiment on F1, the diffusion coefficients of a rotary probe attached to F1, which characterised the fluctuation of the system, were measured under the influence of an electro-rotary field. These diffusion coefficients were then used to estimate a high-energy barrier of the rotary potential of F1 based on the theory of the GE of fluctuation. Furthermore, the ion channel protein channelrhodopsin (ChR) was used as another research model. The current fluctuations of ions moving through ChR were numerically investigated using a simulation model of the protein in the presence of an external voltage. The energy barrier for ion conduction is discussed based on the current fluctuations.

  8. Coupling of photocatalytic and biological processes as a contribution to the detoxification of water: catalytic and technological aspects

    OpenAIRE

    Parra Cardona, Sandra Patricia; Pulgarin, César

    2005-01-01

    This research contributes to the study and development of a new degradation technique that couples solar and biological processes for the treatment of biorecalcitrant, nonbiodegradable, and/or toxic organic substances present in the aqueous medium. Efficient physicochemical pretreatments are necessary to modify the structure of the pollutants, by transforming them into less toxic and biodegradable intermediates, allowing then, a biological procedure to complete the degradation of the pollutan...

  9. Persistence of biological nitrogen fixation in high latitude grass-clover grasslands under different management practices

    Science.gov (United States)

    Tzanakakis, Vasileios; Sturite, Ievina; Dörsch, Peter

    2016-04-01

    Biological nitrogen fixation (BNF) can substantially contribute to N supply in permanent grasslands, improving N yield and forage quality, while reducing inorganic N inputs. Among the factors critical to the performance of BNF in grass-legume mixtures are selected grass and legume species, proportion of legumes, the soil-climatic conditions, in particular winter conditions, and management practices (e.g. fertilization and compaction). In high latitude grasslands, low temperatures can reduce the performance of BNF by hampering the legumés growth and by suppressing N2 fixation. Estimation of BNF in field experiments is not straightforward. Different methods have been developed providing different results. In the present study, we evaluated the performance of BNF, in a newly established field experiment in North Norway over four years. The grassland consisted of white clover (Trifolium repens L.) and red clover (Trifolium pretense L.) sawn in three proportions (0, 15 and 30% in total) together with timothy (Pheum pretense L.) and meadow fescue (Festuca pratensis L.). Three levels of compaction were applied each year (no tractor, light tractor, heavy tractor) together with two different N rates (110 kg N/ha as cattle slurry or 170 kg N/ha as cattle slurry and inorganic N fertilizer). We applied two different methods, the 15N natural abundance and the difference method, to estimate BNF in the first harvest of each year. Overall, the difference method overestimated BNF relative to the 15N natural abundance method. BNF in the first harvest was compared to winter survival of red and white clover plants, which decreased with increasing age of the grassland. However, winter conditions did not seem to affect the grassland's ability to fix N in spring. The fraction of N derived from the atmosphere (NdfA) in white and red clover was close to 100% in each spring, indicating no suppression of BNF. BNF increased the total N yield of the grasslands by up to 75%, mainly due to high

  10. A comparative study of the bacterial community in denitrifying and traditional enhanced biological phosphorus removal processes.

    Science.gov (United States)

    Lv, Xiao-Mei; Shao, Ming-Fei; Li, Chao-Lin; Li, Ji; Gao, Xin-Lei; Sun, Fei-Yun

    2014-09-17

    Denitrifying phosphorus removal is an attractive wastewater treatment process due to its reduced carbon source demand and sludge minimization potential. Two lab-scale sequencing batch reactors (SBRs) were operated in alternating anaerobic-anoxic (A-A) or anaerobic-oxic (A-O) conditions to achieve denitrifying enhanced biological phosphate removal (EBPR) and traditional EBPR. No significant differences were observed in phosphorus removal efficiencies between A-A SBR and A-O SBR, with phosphorus removal rates being 87.9% and 89.0% respectively. The community structures in denitrifying and traditional EBPR processes were evaluated by high-throughput sequencing of the PCR-amplified partial 16S rRNA genes from each sludge. The results obtained showed that the bacterial community was more diverse in A-O sludge than in A-A sludge. Taxonomy and β-diversity analyses indicated that a significant shift occurred in the dominant microbial community in A-A sludge compared with the seed sludge during the whole acclimation phase, while a slight fluctuation was observed in the abundance of the major taxonomies in A-O sludge. One Dechloromonas-related OTU outside the 4 known Candidatus "Accumulibacter" clades was detected as the main OTU in A-A sludge at the stationary operation, while Candidatus "Accumulibacter" dominated in A-O sludge. PMID:24964811

  11. Engineered G-protein coupled receptors are powerful tools to investigate biological processes and behaviors

    Directory of Open Access Journals (Sweden)

    Charles D Nichols

    2009-10-01

    Full Text Available Understanding how discreet tissues and neuronal circuits function in relation to the whole organism to regulate physiological processes and behaviors is a fundamental goal of modern biological science. Powerful and important new tools in this discovery process are modified G-protein coupled receptors (GPCRs known as ‘Receptors Activated Solely by Synthetic Ligands (RASSLs,’ and ‘Designer Receptors Exclusively Activated by a Designer Drug (DREADDs.’ Collectively, these are GPCRs modified either through rational design or directed molecular evolution, that do not respond to native ligand, but functionally respond only to synthetic ligands. Importantly, the utility of these receptors is not limited to examination of the role of GPCR-coupled effector signal transduction pathways. Due to the near ubiquitous expression of GPCRs throughout an organism, this technology, combined with whole animal transgenics to selectively target expression, has the ability to regulate activity of discreet tissues and neuronal circuits through effector pathway modulation to study function and behavior throughout the organism. Advantages over other systems currently used to modify in vivo function include the ability to rapidly, selectively and reversibly manipulate defined signal transduction pathways both in short term and long term studies, and no need for specialized equipment due to convenient systemic treatment with activating ligand.

  12. Development of Biological Coal Gasification (MicGAS Process). Topical report, July 1991--February 1993

    Energy Technology Data Exchange (ETDEWEB)

    Srivastava, K.C.

    1993-06-01

    Laboratory and bench scale reactor research carried out during the report period confirms the feasibility of biomethanation of Texas lignite (TxL) and some other low-rank coals to methane by specifically developed unique anaerobic microbial consortia. The data obtained demonstrates specificity of a particular microbial consortium to a given lignite. Development of a suitable microbial consortium is the key to the success of the process. The Mic-1 consortium was developed to tolerate higher coal loadings of 1 and 5% TxL in comparison to initial loadings of 0.01% and 0.1% TxL. Moreover, the reaction period was reduced from 60 days to 14 to 21 days. The cost of the culture medium for bioconversion was reduced by studying the effect of different growth factors on the biomethanation capability of Mic-1 consortium. Four different bench scale bioreactor configurations, namely Rotating Biological Contactor (RBC), Upflow Fluidized Bed Reactor (UFBR), Trickle Bed Reactor (TBR), and Continuously Stirred Tank Reactor (CSTR) were evaluated for scale up studies. Preliminary results indicated highest biomethanation of TxL by the Mic-1 consortium in the CSTR, and lowest in the trickle bed reactor. However, highest methane production and process efficiency were obtained in the RBC.

  13. Biological treatment of sulfidic spent caustics under haloalkaline conditions using soda lake bacteria

    OpenAIRE

    Graaff, de, R.J.

    2012-01-01

    In this thesis, the development of a newbiotechnological process for the treatment of undiluted sulfidic spent caustics (SSC’s) using soda lake bacteria is described. SSC’s are waste solutions that are formed in the oil and gas industry due to the caustic (NaOH) scrubbing of hydrocarbon streams for the removal of sulfur compounds.Without treatment, SSC’s may impose serious environmental problems because of their alkalinity (pH>12), salinity (Na+ 5-12 wt%) and high sulfide...

  14. Mashing of Rice with Barley Malt Under Nonconventional Process Conditions for Use in Food Processes

    DEFF Research Database (Denmark)

    Moe, T.; Adler-Nissen, Jens

    1994-01-01

    Non-conventional mashing conditions are relevant in the development of a lactic acid-fermented soymilk beverage where mashed rice is the source of carbohydrates for the fermentation and sweetness of the beverage. Advantages in the process layout could be achieved by mashing at higher pH and lower...... conditions when a mashing step is integrated in other food processes....

  15. Influence of tillage practices on soil biologically active organic matter content over a growing season under semiarid Mediterranean climate

    Directory of Open Access Journals (Sweden)

    D. Martín-Lammerding

    2013-02-01

    Full Text Available In semiarid areas, traditional, intensive tillage has led to the depletion of soil organic matter, which has resulted in reduced soil fertility. The aim of the present work was to evaluate the effects of different soil management systems, practised over 12 years, on soil organic carbon (SOC, nitrogen (SN and biologically active organic matter (particulate organic matter [POM]; potentially mineralisable nitrogen [PMN]; microbial biomass [MB]. A Mediterranean Alfisol, located in central Spain, was managed using combinations of conventional tillage (CT, minimum tillage (MT or no-tillage (NT, plus a cropping background of either continuous wheat (WW or a fallow/wheat/pea/barley rotation (FW. Soil was sampled at two depths on four occasions during 2006-2007. The results showed the sampling date and the cropping background to significantly affect the SOC (p<0.0057 and p<0.0001 respectively. Tillage practice, however, had no effect on SOC or SN. The C-and N-POM contents were significantly influenced by the date, tillage and rotation. These variables were significantly higher under NT than CT and under WW than FW. The PMN was influenced by date, tillage and rotation, while C-MB was significantly affected by tillage (p< 0.0063, but not by rotation. The NT plots accumulated 66% C-POM, 60% N-POM, 39% PMN and 84% C-MB more than the CT plots. After more than 12 years, the benefits of conservation practices were found in the considered soil properties, mainly under no tillage. In order to obtain a consistent data set to predict soil biological status, it is necessary further study over time.

  16. Salt marsh response to the effects of physical and biological processes

    Science.gov (United States)

    Roner, Marcella; D'Alpaos, Andrea; Ghinassi, Massimiliano; Franceschinis, Erica; Realdon, Nicola; Marani, Marco

    2014-05-01

    Salt marshes are widespread features of the tidal landscape governed by the interacting physical and biological processes. These crucially important ecosystems provide valuable services and are currently threatened by the effects of increasing rates of relative sea level rise (RSLR) and decreasing sediment supply. Although a few studies have analyzed the biomorphological evolution of salt marsh systems, a complete understanding of the two-way feedbacks between physical and biological processes is still lacking. The temporal evolution of marsh elevation is governed by the balance between inorganic and organic accretion rates, and the rate of RSLR. Studies based on field observations and modeling suggest that, in equilibrium conditions, marsh inorganic accretion rates, and the related platform elevations, decrease with distance from the main creek whereas the organic deposition gradually increases. In order to analyze salt marsh responses to the effect of physical and biological processes, about 100 sediment samples were collected on the San Felice salt marsh, Venice Lagoon. For each sample, local coordinates, surface elevations and vegetation cover were detected, whereas inorganic and organic sediment content, together with grain size distribution, were determined and analyzed. Loss On Ignition (LOI) and a double treatment with H2O2 and NaClO, were used to estimate the amount of organic matter in each sample. Particle size analysis was carried out on the inorganic fraction with a Mastersizer that uses laser diffraction techniques to measure the grain size. Our results show that the San Felice salt marsh is characterized by a concave-up profile, as commonly displayed by marshes worldwide. Marsh elevation is highest along the boundary and decreases toward the inner marsh. The inorganic deposition, which is maximum along the marsh edge, decreases with distance from the channel network, because as water moves across the marsh, the velocity is reduced and sediment

  17. Reflectance of Biological Turbid Tissues under Wide Area Illumination: Single Backward Scattering Approach

    Directory of Open Access Journals (Sweden)

    Guennadi Saiko

    2014-01-01

    Full Text Available Various scenarios of light propagation paths in turbid media (single backward scattering, multiple backward scattering, banana shape are discussed and their contributions to reflectance spectra are estimated. It has been found that a single backward or multiple forward scattering quasi-1D paths can be the major contributors to reflected spectra in wide area illumination scenario. Such a single backward scattering (SBS approximation allows developing of an analytical approach which can take into account refractive index mismatched boundary conditions and multilayer geometry and can be used for real-time spectral processing. The SBS approach can be potentially applied for the distances between the transport and reduced scattering domains. Its validation versus the Kubelka-Munk model, path integrals, and diffusion approximation of the radiation transport theory is discussed.

  18. Are biological effects of space radiation really altered under the microgravity environment?

    Science.gov (United States)

    Yatagai, Fumio; Ishioka, Noriaki

    2014-10-01

    Two major factors of space environment are space radiation and microgravity. It is generally considered that a high level of ionizing radiation (IR) in space has an influence on living organisms including humans; therefore, the possible alteration of space-radiation influences by the microgravity environment is of great concern. In fact, examination of such a possibility has been extensively conducted since the early days of space experiments, suggesting a possible synergistic effect of radiation and microgravity in some experiments but a negative observation in others. Because these complicated results remain not well understood, we propose a solution to this problem. Gene expression analysis is one of the solutions to the problem. In fact, gene expression may be changed by microgravity, and further modification may be possible through IR. This result could reveal an interactive effect of both factors on the cellular responses, which could in turn reveal whether the human-health abnormalities expected under the microgravity environment can be altered by space radiation. We believe that this is a new aspect in the study of the interactive effect of radiation and microgravity. However, further improvements in space experimental technologies are required for future studies.

  19. Mashing of Rice with Barley Malt Under Nonconventional Process Conditions for Use in Food Processes

    DEFF Research Database (Denmark)

    Moe, T.; Adler-Nissen, Jens

    1994-01-01

    Non-conventional mashing conditions are relevant in the development of a lactic acid-fermented soymilk beverage where mashed rice is the source of carbohydrates for the fermentation and sweetness of the beverage. Advantages in the process layout could be achieved by mashing at higher pH and lower...... conditions when a mashing step is integrated in other food processes.......Non-conventional mashing conditions are relevant in the development of a lactic acid-fermented soymilk beverage where mashed rice is the source of carbohydrates for the fermentation and sweetness of the beverage. Advantages in the process layout could be achieved by mashing at higher pH and lower...

  20. Biological neural networks as model systems for designing future parallel processing computers

    Science.gov (United States)

    Ross, Muriel D.

    1991-01-01

    One of the more interesting debates of the present day centers on whether human intelligence can be simulated by computer. The author works under the premise that neurons individually are not smart at all. Rather, they are physical units which are impinged upon continuously by other matter that influences the direction of voltage shifts across the units membranes. It is only the action of a great many neurons, billions in the case of the human nervous system, that intelligent behavior emerges. What is required to understand even the simplest neural system is painstaking analysis, bit by bit, of the architecture and the physiological functioning of its various parts. The biological neural network studied, the vestibular utricular and saccular maculas of the inner ear, are among the most simple of the mammalian neural networks to understand and model. While there is still a long way to go to understand even this most simple neural network in sufficient detail for extrapolation to computers and robots, a start was made. Moreover, the insights obtained and the technologies developed help advance the understanding of the more complex neural networks that underlie human intelligence.

  1. Links between physical, chemical and biological processes in Bashita-minato, a mangrove swamp in Japan

    Science.gov (United States)

    Mazda, Yoshihiro; Sato, Yoshio; Sawamoto, Shozo; Yokochi, Hiroyuki; Wolanski, Eric

    1990-12-01

    Bashita-minato in Iriomote Island, Japan, is a mangrove swamp separated from a coral reef slightly offshore by a sill made of coral sand. As a result of storm-dominated formation and erosion of the sill, the water properties in the swamp vary widely with time. When water flows over the sill into the swamp from a nearby coral reef at flood tide, the oxygen cycle and the water properties in the swamp depend on both the semi-diurnal tidal flows and the diurnal cycle of oxygen concentration in reef waters, which is caused by biological activities, i.e. photosynthesis and respiration in the shallow coral reef area. When the entrance is blocked by the sill, the swamp becomes ponded, and the water temperature increases rapidly (1 °C day -1), with a temperature maximum at a mid-water layer as in a solar pond. The bottom layer, rich in organic matter from decaying mangrove detritus, becomes anoxic within a day after the sill closure. Various chemicals are then released from the bottom mud, the irradiance extinction coefficient increasing by as much as 1 m -1 day -1. This in turn results in continuous degradations in photosynthetic activity of benthic algae and in water properties until the sill is breached again under spring high tides or intense rainfall.

  2. Advanced low carbon-to-nitrogen ratio wastewater treatment by electrochemical and biological coupling process.

    Science.gov (United States)

    Deng, Shihai; Li, Desheng; Yang, Xue; Zhu, Shanbin; Xing, Wei

    2016-03-01

    Nitrogen pollution in ground and surface water significantly affects the environment and its organisms, thereby leading to an increasingly serious environmental problem. Such pollution is difficult to degrade because of the lack of carbon sources. Therefore, an electrochemical and biological coupling process (EBCP) was developed with a composite catalytic biological carrier (CCBC) and applied in a pilot-scale cylindrical reactor to treat wastewater with a carbon-to-nitrogen (C/N) ratio of 2. The startup process, coupling principle, and dynamic feature of the EBCP were examined along with the effects of hydraulic retention time (HRT), dissolved oxygen (DO), and initial pH on nitrogen removal. A stable coupling system was obtained after 51 days when plenty of biofilms were cultivated on the CCBC without inoculation sludge. Autotrophic denitrification, with [Fe(2+)] and [H] produced by iron-carbon galvanic cells in CCBC as electron donors, was confirmed by equity calculation of CODCr and nitrogen removal. Nitrogen removal efficiency was significantly influenced by HRT, DO, and initial pH with optimal values of 3.5 h, 3.5 ± 0.1 mg L(-1), and 7.5 ± 0.1, respectively. The ammonia, nitrate, and total nitrogen (TN) removal efficiencies of 90.1 to 95.3 %, 90.5 to 99.0 %, and 90.3 to 96.5 % were maintained with corresponding initial concentrations of 40 ± 2 mg L(-1) (NH3-N load of 0.27 ± 0.01 kg NH3-N m(-3) d(-1)), 20 ± 1 mg L(-1), and 60 ± 2 mg L(-1) (TN load of 0.41 ± 0.02 kg TN m(-3) d(-1)). Based on the Eckenfelder model, the kinetics equation of the nitrogen transformation along the reactor was N e  = N 0 exp (-0.04368 h/L(1.8438)). Hence, EBCP is a viable method for advanced low C/N ratio wastewater treatment. PMID:26564190

  3. Advanced treatment of biologically pretreated coking wastewater by intensified zero-valent iron process (IZVI) combined with anaerobic filter and biological aerated filter (AF/BAF)

    Institute of Scientific and Technical Information of China (English)

    潘碌亭; 韩悦; 吴锦峰

    2015-01-01

    Experiments were conducted to investigate the behavior of the sequential system of intensified zero-valent iron process (IZVI) and anaerobic filter and biological aerated filter (AF/BAF) reactors for advanced treatment of biologically pretreated coking wastewater. Particular attention was paid to the performance of the integrated system for the removal of chemical oxygen demand (COD), ammonia nitrogen (NH3-N) and total nitrogen (TN). The average removal efficiencies of COD, NH3-N and TN were 76.28%, 96.76% and 59.97%, with the average effluent mass concentrations of 56, 0.53 and 18.83 mg/L, respectively, reaching the first grade of the national discharge standard. Moreover, the results of gas chromatography/mass spectrum (GC/MS) and gel permeation chromatography (GPC) analysis demonstrated that the refractory organic compounds with high relative molecular mass were partly removed in IZVI process by the function of oxidation-reduction, flocculation and adsorption which could also enhance the biodegradability of the system effluent. The removal efficiencies of NH3-N and TN were achieved mainly in the subsequent AF/BAF reactors by nitrification and denitrification. Overall, the results obtained show that the application of IZVI in combination with AF/BAF is a promising technology for advanced treatment of biologically pretreated coking wastewater.

  4. Processes that Drove the Transition from Chemistry to Biology: Concepts and Evidence

    Science.gov (United States)

    Pohorille, Andrew

    2012-01-01

    above background was evolved in vitro. This enzyme does not look like any contemporary protein. It is very flexible and its structure is kept together just by a single salt bridge between a charged residue and a coordinating zinc. A similar picture emerges from studies of simple transmembrane channels that mimic those in ancestral cells. Again, they are extremely flexible and do not form a conventional pore. Yet, they efficiently mediate ion transport. Studies on simple proteins that are on-going in several laboratories hold promise of revealing crucial links between chemical and biological catalysis and other ubiquitous cell functions. Interaction between composition, growth and division of protobiologically relevant vesicles and metabolic reactions that they encapsulate is an example of coupling between simple functions that promotes reproduction and evolution. Recent studies have demonstrated possible mechanisms by which vesicles might have evolved their composition from fatty acids to phospholipids, thus facilitating a number of new cellular functions. Conversely, it has been also demonstrated that an encapsulated metabolism might drive vesicle division. These are, again, examples of processes that might have driven the transition from chemistry to biology.

  5. An efficient process for wastewater treatment to mitigate free nitrous acid generation and its inhibition on biological phosphorus removal

    OpenAIRE

    Zhao, Jianwei; Wang, Dongbo; Li, Xiaoming; Yang, Qi; Chen, Hongbo; Zhong, Yu; An, Hongxue; Zeng, Guangming

    2015-01-01

    Free nitrous acid (FNA), which is the protonated form of nitrite and inevitably produced during biological nitrogen removal, has been demonstrated to strongly inhibit the activity of polyphosphate accumulating organisms (PAOs). Herein we reported an efficient process for wastewater treatment, i.e., the oxic/anoxic/oxic/extended-idle process to mitigate the generation of FNA and its inhibition on PAOs. The results showed that this new process enriched more PAOs which thereby achieved higher ph...

  6. RNA synthetic biology inspired from bacteria: construction of transcription attenuators under antisense regulation

    International Nuclear Information System (INIS)

    Among all biopolymers, ribonucleic acids or RNA have unique functional versatility, which led to the early suggestion that RNA alone (or a closely related biopolymer) might have once sustained a primitive form of life based on a single type of biopolymer. This has been supported by the demonstration of processive RNA-based replication and the discovery of 'riboswitches' or RNA switches, which directly sense their metabolic environment. In this paper, we further explore the plausibility of this 'RNA world' scenario and show, through synthetic molecular design guided by advanced RNA simulations, that RNA can also perform elementary regulation tasks on its own. We demonstrate that RNA synthetic regulatory modules directly inspired from bacterial transcription attenuators can efficiently activate or repress the expression of other RNA by merely controlling their folding paths 'on the fly' during transcription through simple RNA–RNA antisense interaction. Factors, such as NTP concentration and RNA synthesis rate, affecting the efficiency of this kinetic regulation mechanism are also studied and discussed in the light of evolutionary constraints. Overall, this suggests that direct coupling among synthesis, folding and regulation of RNAs may have enabled the early emergence of autonomous RNA-based regulation networks in absence of both DNA and protein partners

  7. A DO- and pH-based early warning system of nitrification inhibition for biological nitrogen removal processes.

    Science.gov (United States)

    Hong, Seil; Choi, Il; Lim, Byung Jin; Kim, Hyunook

    2012-01-01

    In Korea, more than 80% of municipal wastewater treatment plants (WWTPs) with capacities of 500 m3·d-1 or more are capable of removing nitrogen from wastewater through biological nitrification and denitrification processes. Normally, these biological processes show excellent performance, but if a toxic chemical is present in the influent to a WWTP, the biological processes (especially, the nitrification process) may be affected and fail to function normally; nitrifying bacteria are known very vulnerable to toxic substances. Then, the toxic compound as well as the nitrogen in wastewater may be discharged into a receiving water body without any proper treatment. Moreover, it may take significant time for the process to return back its normal state. In this study, a DO- and pH-based strategy to identify potential nitrification inhibition was developed to detect early the inflow of toxic compounds to a biological nitrogen removal process. This strategy utilizes significant changes observed in the oxygen uptake rate and the pH profiles of the mixed liquor when the activity of nitrifying bacteria is inhibited. Using the strategy, the toxicity from test wastewater with 2.5 mg·L-1 Hg2+, 0.5 mg·L-1 allythiourea, or 0.25 mg·L-1 chloroform could be successfully detected. PMID:23443381

  8. Removal of Refractory Organics from Biologically Treated Landfill Leachate by Microwave Discharge Electrodeless Lamp Assisted Fenton Process

    Directory of Open Access Journals (Sweden)

    Jiuyi Li

    2015-01-01

    Full Text Available Biologically treated leachate usually contains considerable amount of refractory organics and trace concentrations of xenobiotic pollutants. Removal of refractory organics from biologically treated landfill leachate by a novel microwave discharge electrodeless lamp (MDEL assisted Fenton process was investigated in the present study in comparison to conventional Fenton and ultraviolet Fenton processes. Conventional Fenton and ultraviolet Fenton processes could substantially remove up to 70% of the refractory organics in a membrane bioreactor treated leachate. MDEL assisted Fenton process achieved excellent removal performance of the refractory components, and the effluent chemical oxygen demand concentration was lower than 100 mg L−1. Most organic matters were transformed into smaller compounds with molecular weights less than 1000 Da. Ten different polycyclic aromatic hydrocarbons were detected in the biologically treated leachate, most of which were effectively removed by MDEL-Fenton treatment. MDEL-Fenton process provides powerful capability in degradation of refractory and xenobiotic organic pollutants in landfill leachate and could be adopted as a single-stage polishing process for biologically treated landfill leachate to meet the stringent discharge limit.

  9. Searching the literature for proteins facilitates the identification of biological processes, if advanced methods of analysis are linked

    DEFF Research Database (Denmark)

    Bauer, Johann; Bussen, Markus; Wise, Petra;

    2016-01-01

    exposed to microgravity conditions. RESEARCH DESIGN AND METHODS: We retrieved publications about microgravity related studies on each type of cell, extracted the proteins mentioned therein and analyzed them subsequently using Pathway Studio aiming to identify biological processes affected by microgravity...... of gravity is common to all the different cell types, at least some of the 19 biological processes could play a role in cellular adaption to microgravity. The application of computer programs, helping to extract and analyze proteins and genes mentioned in publications will become essential for scientists...

  10. Fröhlich Condensate: Emergence of Synergetic Dissipative Structures in Information Processing Biological and Condensed Matter Systems

    Directory of Open Access Journals (Sweden)

    Roberto Luzzi

    2012-10-01

    Full Text Available We consider the case of a peculiar complex behavior in open boson systems sufficiently away from equilibrium, having relevance in the functioning of information-processing biological and condensed matter systems. This is the so-called Fröhlich–Bose–Einstein condensation, a self-organizing-synergetic dissipative structure, a phenomenon apparently working in biological processes and present in several cases of systems of boson-like quasi-particles in condensed inorganic matter. Emphasis is centered on the quantum-mechanical-statistical irreversible thermodynamics of these open systems, and the informational characteristics of the phenomena.

  11. Influence of temperature and humidity on the biology of Triatoma mexicana (Hemiptera: Reduviidae: Triatominae under laboratory conditions

    Directory of Open Access Journals (Sweden)

    José Alejandro Martínez-Ibarra

    2008-11-01

    Full Text Available Several biological parameters related to the Triatoma mexicana life-cycle were evaluated in this study. Three cohorts were maintained under different combinations of temperature and relative humidity (RH: 25ºC/50% RH; 25ºC/75% RH; and 30ºC/75% RH. Observed hatching rates varied from 49-57.5% whereas the average time of hatching varied from 19.5-22.7 days. In the three cohorts studied, the mean time-lapse between presentation of the blood meal and the beginning of feeding was less than 5 min in all instars; the mean feeding time was longer than 10 min in all the instars; the post-feed defecation delay was over 10 min in all the instars. Less than 50% of nymphs in each cohort completed the cycle and the average time from 1st instar nymph to adult was more than 255 days for the three cohorts. The number of blood meals before molt at each nymphal instar varied from 1-9. Our results appear to indicate a lack of influence of temperature and RH on the biological parameters of T. mexicana that were studied, which could reflect the adaptation capacity of this species. We also conclude that T. mexicana can not be considered an effective transmitter of Trypanosoma cruzi to human populations in areas where this species is currently present.

  12. TF-finder: A software package for identifying transcription factors involved in biological processes using microarray data and existing knowledge base

    Directory of Open Access Journals (Sweden)

    Cui Xiaoqi

    2010-08-01

    Full Text Available Abstract Background Identification of transcription factors (TFs involved in a biological process is the first step towards a better understanding of the underlying regulatory mechanisms. However, due to the involvement of a large number of genes and complicated interactions in a gene regulatory network (GRN, identification of the TFs involved in a biology process remains to be very challenging. In reality, the recognition of TFs for a given a biological process can be further complicated by the fact that most eukaryotic genomes encode thousands of TFs, which are organized in gene families of various sizes and in many cases with poor sequence conservation except for small conserved domains. This poses a significant challenge for identification of the exact TFs involved or ranking the importance of a set of TFs to a process of interest. Therefore, new methods for recognizing novel TFs are desperately needed. Although a plethora of methods have been developed to infer regulatory genes using microarray data, it is still rare to find the methods that use existing knowledge base in particular the validated genes known to be involved in a process to bait/guide discovery of novel TFs. Such methods can replace the sometimes-arbitrary process of selection of candidate genes for experimental validation and significantly advance our knowledge and understanding of the regulation of a process. Results We developed an automated software package called TF-finder for recognizing TFs involved in a biological process using microarray data and existing knowledge base. TF-finder contains two components, adaptive sparse canonical correlation analysis (ASCCA and enrichment test, for TF recognition. ASCCA uses positive target genes to bait TFS from gene expression data while enrichment test examines the presence of positive TFs in the outcomes from ASCCA. Using microarray data from salt and water stress experiments, we showed TF-finder is very efficient in recognizing

  13. [Progress in down-stream processing of biologically produced 1,3-propanediol].

    Science.gov (United States)

    Wu, Ruchun; Xu, Yunzhen; Liu, Dehua

    2011-03-01

    1,3-propanediol is an important raw material in chemical industry. Microbial conversion of glycerol or glucose into 1,3-propanediol has been given much attention due to its renewable resource, mild reaction conditions, and other advantages. It is a challenge to efficiently separate 1,3-propanediol from a mixture of multiple components, such as 1,3-propanediol, 2,3-butanediol, water, residual glycerol, ethanol, macromolecules and salts, for the reason that 1,3-propanediol, glycerol and 2,3-butanediol are all very hydrophilic and have intense polarity. The conventional evaporation and distillation techniques used in the purification of 1,3-propanediol suffer from the problem of high energy consumption and low recovery. It makes the recovery of 1,3-propanediol from a fermentation broth become a bottleneck in industrial production. The down-stream processing of biologically produced 1,3-propanediol mainly includes the removal of protein, salts, water and other impurities. This paper analyze the research progress of these separation technologies and point out the developing direction worth further investigation. PMID:21650033

  14. New Method for Monitoring the Process of Freeze Drying of Biological Materials.

    Science.gov (United States)

    Alkeev, Nikolay; Averin, Stanislav; von Gratowski, Svetlana

    2015-12-01

    A capacitive sensor was proposed and tested for the monitoring and control of a freeze drying process of a vaccine against the Newcastle disease of birds. The residual moisture of the vaccine was measured by the thermogravimetric method. The vaccine activity was determined by titration in chicken embryos. It was shown that, at the stages of freezing and primary drying, a capacitive sensor measured the fraction of unfrozen liquid phase in a material and allowed one to control the sublimation stage of drying in an optimal way. This prevented the foaming of the material and shortened the total drying time approximately twice. The control range at the sublimation stage of drying expanded up to -70°C. It was found at the final stage of drying that the signal of a capacitive sensor passed through a maximum value. We supposed that this maximum corresponds to the minimum of intramolecular mobility of biological macromolecules and hence to the optimal residual moisture of the material, which ensures long-term preservation of its activity. We also suppose that using the capacitive sensor at the final stage of drying allows one to more precisely detect the time when the residual moisture of dried material reaches the optimal value. PMID:26022547

  15. DECOLORIZATION AND BIOLOGICAL DEGRADATION OF AZO DYE REACTIVE RED2 BY ANAEROBIC/AEROBIC SEQUENTIAL PROCESS

    Directory of Open Access Journals (Sweden)

    A. Naimabadi ، H. Movahedian Attar ، A. Shahsavani

    2009-04-01

    Full Text Available This study investigates the anaerobic treatability of reactive Red2 in an anaerobic/aerobic sequential process. Laboratory scale anaerobic baffled reactor and fixed activated sludge reactor were operated at different organic loadings and hydraulic retention times. The effects of shock dye concentration on the chemical oxygen demand and color removal efficiencies were investigated in the anaerobic baffled reactor. The effect of hydraulic retention time on the color and chemical oxygen demand removal efficiencies were also investigated in the aerobic reactor. The studies were carried out in continuous mode and the effluent of the anaerobic baffled reactor was used as feed for the fixed activated sludge reactor. Chemical oxygen demand removal efficiency of 54.5% was obtained at HRT =1 day in the anaerobic reactor. The average color removal was 89.5%. Chemical oxygen demand removal efficiency of 69% was obtained at HRT =7 h in the aerobic fixed activated sludge reactor. A slight decrease of the color was also observed in the aerobic reactor. This investigation has shown that successful treatment of a highly colored wastewater is possible in the anaerobic baffled reactor. Also the results showed that, anaerobic biological system has higher efficiency in dye removal than fixed activated sludge system, while aerobic system has higher efficiency in chemical oxygen demand removal comparing with the anaerobic baffled reactor.

  16. Electro-oxidation process and mechanism of molybdenite decomposition under ultrasonic effect

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    According to the characteristics and shortcomings of the traditional roasting process and the electro-oxidation process in the molybdenum metallurgical industry,the ultrasound electro-oxidation process was proposed to strengthen the oxidative decomposition or leaching of molybdenum.Laboratory work was carried out in an electrochemical cell with 15 nun electrode spacing at 25℃ under ultrasonic effect.The optimum conditions were found through experiments.The electro-oxidation mechanism of molybdenite decomposition under ultrasonic was investigated.A model of electro-oxidation mechanism of molybdenum under ultrasonic was given.

  17. Chemical Composition and Biological Activity of Essential Oils of Origanum vulgare L. subsp. vulgare L. under Different Growth Conditions

    Directory of Open Access Journals (Sweden)

    Enrica De Falco

    2013-12-01

    Full Text Available This research was aimed at investigating the essential oil production, chemical composition and biological activity of a crop of pink flowered oregano (Origanum vulgare L. subsp. vulgare L. under different spatial distribution of the plants (single and binate rows. This plant factor was shown to affect its growth, soil covering, fresh biomass, essential oil amount and composition. In particular, the essential oil percentage was higher for the binate row treatment at the full bloom. The chemical composition of the oils obtained by hydrodistillation was fully characterized by GC and GC-MS. The oil from plants grown in single rows was rich in sabinene, while plants grown in double rows were richer in ocimenes. The essential oils showed antimicrobial action, mainly against Gram-positive pathogens and particularly Bacillus cereus and B. subtilis.

  18. Biological carbon fixation: A study of Isochrysis sp. growth under actual coal-fired power plant's flue gas

    International Nuclear Information System (INIS)

    Preliminary study on the growth of marine microalgae Isochrysis sp. was carried out using actual flue gas from a coal-fired power station. The species was cultured using a 2×10-L customized bubble column photobioreactor skid under specified culture conditions. With an initial culture density of 0.459 Abs (optical density at 560 nm wavelength), the species was found able to survive – observed by increases in optical densities, number of cells and weights – in the presence of actual coal-fired flue gas containing on average 4.08 % O2, 200.21 mg/m3 SO2, 212.29 mg/m3 NOx, 4.73 % CO2 and 50.72 mg/m3 CO. Results thus add value to the potential and capability of microalgae, especially for Isochrysis sp., to be the biological carbon fixer in neutralizing carbon emissions from power plants.

  19. Performance of biological phosphorus removal and characteristics of microbial community in the oxic-settling-anaerobic process by FISH analysis

    Institute of Scientific and Technical Information of China (English)

    Jian-fang WANG; Qing-liang ZHAO; Wen-biao JIN; Shi-jie YOU; Jin-na ZHANG

    2008-01-01

    Performance of biological phosphorus removal in the oxic-settling-anaerobic (OSA) process was investigated. Cell staining and fluorescent in situ hybridization (FISH) were used to analyze characteristics and microbial community of sludge.Experimental results showed that phosphorus removal efficiency was near 60% and the amount of biological phosphorus accumulation in aerobic sludge of the OSA system was up to 26.9 mg/g. Biological phosphorus removal efficiency was partially inhibited by carbon sources in the continuous OSA system. Contrasted to the OSA system, biological phosphorus removal efficiency was enhanced by 14% and the average total phosphorus (TP) contents of aerobic sludge were increased by 0.36 mg/g when sufficient carbon sources were supplied in batch experiments. Staining methods indicated that about 35% of microorganisms had typical characteristics of phosphorus accumulating organisms (PAOs). FISH analysis demonstrated that PAOMIX-binding bacteria were predominant microbial communities in the OSA system, which accounted for around 28% of total bacteria.

  20. Red laser attenuation in biological tissues: study of the inflammatory process and pigmentation influence

    Science.gov (United States)

    Sabino, Caetano P.; Meneguzzo, Daiane T.; Benetti, Endi; Kato, Ilka T.; Prates, Renato A.; Ribeiro, Martha S.

    2012-03-01

    Several studies indicate that low level laser therapy (LLLT) accelerates the healing process, however, for a determined pathology, dosimetry remains difficult to be established. To understand the tissue optical properties under different conditions is extremely relevant since the dose delivered to the target tissue is known to be critical. The skin pigmentation influence on the laser attenuation is not yet well established on different mice lineages or human ethnical groups, making the dose problematic. Along the same line, inflammatory processes may cause similar problems since the tissues in this condition change their optical properties due to inflammatory cell accumulation. This work evaluated the attenuation pattern of a HeNe laser (λ=632.8 nm) using ex vivo skin samples from Balb/C and C57BL/6 mice under inflammatory stages induced in their paw by local carrageenan inoculation. The samples were placed between two microscope slides, and a CCD camera was placed orthogonal to the beam path. The intensity distribution of the scattered light was photographed in grayscale and analyzed by ImageJ software. Our findings suggest that even slight differences of the epithelial pigmentation could result in a relevant dose loss delivered to the deeper tissues. The increase of the inflammatory cell density in the connective tissue indicated a highly scattering area also resulting in a dose loss for the deeper tissues when compared to control group.

  1. A New Development in Biological Process for Wastewater Treatment to Produce Renewable Fuel

    Directory of Open Access Journals (Sweden)

    Kadhum M. Shabeeb

    2010-01-01

    Full Text Available Problem statement: Hydrogen is a clean energy source. Bio-conversion of biomass to generate hydrogen has been achieved using anaerobic fermentation of some well-defined materials, in wastewater. No data available on hydrogen yielded from wastewater using inoculum extracted from Iraqi municipal wastewater treatment plant. Approach: This study investigated the effects of substrate concentration, initial pH and process temperature on biohydrogen production from surgery wastewater using anaerobic batch reactor. Batch tests are carried out in a 2.0 L batch reactor under different temperatures of 34, 36, 38and 40°C, various initial pH of 4.5, 5.5 and 6.5 and substrate concentrations of 5, 10 and 15%. The raw seed was compost sludge obtained from municipal wastewater treatment plant in Baghdad (Al-Restomia plant. The volume of evolved gas was measured at room temperature by the water displacement method. Results: The maximum hydrogen production 160 mL L-1 is obtained at an optimum temperature of 38°C, optimum pH of 5.5 and substrate concentration 15%. Conclusion: The results indicated that the use of compost of Al-Restomia plant as a seed in anaerobic fermentation process has given excellent biogas production under applied conditions.

  2. An updated synthesis of the observed and projected impacts of climate change on the chemical, physical and biological processes in the oceans

    Directory of Open Access Journals (Sweden)

    Ella Louise Howes

    2015-06-01

    Full Text Available The 5th Assessment Report (AR5 of the Intergovernmental Panel on Climate Change (IPCC states with very high certainty that anthropogenic emissions have caused measurable changes in the physical ocean environment. These changes are summarized with special focus on those that are predicted to have the strongest, most direct effects on ocean biological processes; namely, ocean warming and associated phenomena (including stratification and sea level rise as well as deoxygenation and ocean acidification. The biological effects of these changes are then discussed for microbes (including phytoplankton, plants, animals, warm and cold-water corals, and ecosystems. The IPCC AR5 highlighted several areas related to both the physical and biological processes that required further research. As a rapidly developing field, there have been many pertinent studies published since the cut off dates for the AR5, which have increased our understanding of the processes at work. This study undertook an extensive review of recently published literature to update the findings of the AR5 and provide a synthesized review on the main issues facing future oceans. The level of detail provided in the AR5 and subsequent work provided a basis for constructing projections of the state of ocean ecosystems in 2100 under two the Representative Concentration Pathways RCP4.5 and 8.5. Finally the review highlights notable additions, clarifications and points of departure from AR5 provided by subsequent studies.

  3. Do new Access and Benefit Sharing procedures under the Convention on Biological Diversity threaten the future of biological control? Supplemental material (case studies, natural enemy releases, country views concerning ABS)

    OpenAIRE

    Cock, M.J.W.; Lenteren, van, J.C.; Brodeur, J; Barratt, I.P.; Bigler, F.; Bolckmans, K.; Cônsoli, F.L.; Haas, F.; Mason, P.G.; J.R.P. PARRA

    2010-01-01

    Under the Convention on Biological Diversity (CBD) countries have sovereign rights over their genetic resources. Agreements governing the access to these resources and the sharing of the benefits arising from their use need to be established between involved parties [i.e. Access and Benefit Sharing (ABS)]. This also applies to species collected for potential use in biological control. Recent applications of CBD principles have already made it difficult or impossible to collect and export natu...

  4. The characterization of regenerative processes on grapevine culture under DDW influence

    International Nuclear Information System (INIS)

    In order to study the influence of DDW (Deuterium Depleted Water) on regenerative processes in grapevine a culture of explants, taken out from plants belonging to Feteasca Alba and Feteasca Neagra sorts, was made in a DDW medium and compared with to usual medium. During three subculture (90-100 days of culture), the influence of DDW on the regenerative processes and the biochemical composition of biological material were observed. It was investigated the possibility of using DDW like a sterile agent for explants (in initialization stage) and in treatment against mould (in acclimatization stage). Without excluding the endogen factor, our observations on biological materials cultivated in vitro, demonstrated a positive influence of DDW, by the increase of growth and acclimatization rate. (authors)

  5. The characterization of regenerative processes on grapevine culture under DDW influence

    International Nuclear Information System (INIS)

    In order to study the influence of DDW on regenerative processes in grapevine culture, an explants culture, with plants belonging to Feteasca Alba and Feteasca Neagra varieties was made, which was growth on medium with DDW, and compared with the usual water medium. During three subculture (90-100 days of culture), the influence of DDW on the regenerative processes and the biochemical composition of biological material were observed. It was investigated the possibility of DDW use like sterile agent for explants (in initialization stage) and in treatment against mould (in acclimatization stage). Without excluding the endogenous factor, our observations on biological material coming from in vitro, demonstrated a positive influence of DDW, namely an increase of multiplication and acclimatization rate. (authors)

  6. N deposition as a threat to the World's protected areas under the Convention on Biological Diversity

    Energy Technology Data Exchange (ETDEWEB)

    Bleeker, A., E-mail: a.bleeker@ecn.nl [Energy research Centre of the Netherlands (ECN), P.O. Box 1, 1755ZG Petten (Netherlands); Hicks, W.K. [Stockholm Environment Institute (SEI), University of York (United Kingdom); Dentener, F. [European Commission, Joint Research Centre, Ispra (Italy); Galloway, J. [University of Virginia, VA (United States); Erisman, J.W. [Energy research Centre of the Netherlands (ECN), P.O. Box 1, 1755ZG Petten (Netherlands); VU University Amsterdam (Netherlands)

    2011-10-15

    This paper combines the world's protected areas (PAs) under the Convention on Biological Diversity (CBD), common classification systems of ecosystem conservation status, and current knowledge on ecosystem responses to nitrogen (N) deposition to determine areas most at risk. The results show that 40% (approx. 11% of total area) of PAs currently receive >10 kg N/ha/yr with projections for 2030 indicating that this situation is not expected to change. Furthermore, 950 PAs are projected to receive >30 kg N/ha/yr by 2030 (approx. twice the 2000 number), of which 62 (approx. 11,300 km{sup 2}) are also Biodiversity Hotspots and G200 ecoregions; with forest and grassland ecosystems in Asia particularly at risk. Many of these sites are known to be sensitive to N deposition effects, both in terms of biodiversity changes and ecosystem services they provide. Urgent assessment of high risk areas identified in this study is recommended to inform the conservation efforts of the CBD. - Highlights: > Significant areas of the Protected Areas Programme under the CBD will likely be under threat of high N deposition levels by the year 2030.> Approx. 950 PAs are projected to receive N deposition levels of more than 30 kg N/ha/yr by 2030.> 62 of these sites are also Biodiversity Hotspots and G200 ecoregions, where forest and grassland ecosystems in Asia will be particularly at risk.> Many of these sites are known to be sensitive to N deposition effects, both in terms of biodiversity changes and ecosystem services they provide > Urgent assessment of high risk areas identified in this study is recommended to inform the conservation efforts of the CBD. - Significant areas of the UNEP Protected Areas Programme under the CBD receive high N deposition rates that are likely to increase in the future, especially in Asia, and may pose a significant threat to biodiversity.

  7. Gene-ontology enrichment analysis in two independent family-based samples highlights biologically plausible processes for autism spectrum disorders.

    LENUS (Irish Health Repository)

    Anney, Richard J L

    2012-02-01

    Recent genome-wide association studies (GWAS) have implicated a range of genes from discrete biological pathways in the aetiology of autism. However, despite the strong influence of genetic factors, association studies have yet to identify statistically robust, replicated major effect genes or SNPs. We apply the principle of the SNP ratio test methodology described by O\\'Dushlaine et al to over 2100 families from the Autism Genome Project (AGP). Using a two-stage design we examine association enrichment in 5955 unique gene-ontology classifications across four groupings based on two phenotypic and two ancestral classifications. Based on estimates from simulation we identify excess of association enrichment across all analyses. We observe enrichment in association for sets of genes involved in diverse biological processes, including pyruvate metabolism, transcription factor activation, cell-signalling and cell-cycle regulation. Both genes and processes that show enrichment have previously been examined in autistic disorders and offer biologically plausibility to these findings.

  8. Monitoring of environmental effects and process performance during biological treatment of sediment from the Petroleum Harbour in Amsterdam

    International Nuclear Information System (INIS)

    A full-scale (470 m3) process for biological treatment of dredging spoil from the Petroleum Harbour in Amsterdam has been monitored during a pilot project. The dredging spoil was heavily polluted with polycyclic aromatic hydrocarbons (PAH) and mineral oil. The remediation chain involved dredging, transport of dredged spoil, hydrocyclone separation, froth flotation of the coarse particles, and biological treatment of the silt fraction (<20 μm) in stirred bioreactors. The independent monitoring was aimed at recording the environmental effects, product quality and performance of the biological process. Hydrocyclone separation (cut point 20 m) resulted in two bulk streams: 65% sand and 30% silt (based on total dry weight of the input). (author)

  9. Reverse micelle mediated synthesis, processing, mechanical and biological characterization of hydroxyapatite nanopowders for bone graft application

    Science.gov (United States)

    Banerjee, Ashis

    Hydroxyapatite (HA) is the most widely used bioceramic material in bone graft applications because of its compositional similarity with natural bone. However, synthetic HA does not show similar mechanical and biological properties to the inorganic component of bone. Properties of ceramic material depend on starting materials, processing techniques, densification and microstructure of the final product. The objective of this research was to process HA whisker reinforced HA composite using HA nanopowders and whiskers. HA nanopowders with different length scale and morphology were synthesized by reverse micelle system using NP5 and NP12 as surfactants and cyclohexane as organic solvent. The lowest average aspect ratio was 1.357+/-0.39 with average particle size of 66 nm and the highest average aspect ratio was 7.277+/-3.227 with average length of 150 nm and width of 20 nm, were synthesized. Micron sized HA whiskers with aspect ratio between 20 and 50, average particle length of 15 mum and width of 400 nm was synthesized using urea as a precipitating agent. Desired microstructure was obtained after sintering with spherical HA nanopowder and whiskers along with dopants. Addition of whiskers decreased density of the sintered compacts. However, at 10 wt% whisker content sample showed microhardness and fracture toughness of 3.6 GPa and 1.5 MPa.m1/2, respectively, and a compressive strength of 80 MPa was obtained. Mineralization study in simulated body fluid (SBF) showed formation of apatite layer on the dense HA compacts indicating a good tendency of bond formation with natural bone. Cytotoxicity results showed excellent cell attachment on the HA surface. In the Appendices, 3 journal articles have been attached which describe synthesis, processing and characterization of undoped and doped PZT nanopowders. Free standing and agglomerated PZT nanopowders were synthesized by the sucrose templated method and the citrate nitrate autocombustion method. Particle size in the range

  10. Development of chemical and biological processes for production of bioethanol. Optimization of the wet oxidation process and characterization of products

    International Nuclear Information System (INIS)

    The combination of the wet oxidation pretreatment process and alkaline hydrolysis was investigated in order to efficiently solubilize the hemicellulose, degrade the lignin, and open the solid crystalline cellulose structure of wheat straw lignocellulose without generating fermentation inhibitors. The effects of temperature, oxygen pressure, reaction time, and concentration of straw were evaluated. The degree of lignin degradation and hemicellulose solubilization increased with the reaction temperature and time. The optimum conditions were 15 minutes at 185 deg. C, producing 9.8 g/L hemicellulose. For quantification of the solubilized hemicellulose the best overall acid hydrolysis was obtained by treatment with 4 %w/v sulfuric acid for 10 minutes. The Aminex HPX-87H column was less sensitive towards impurities than the Aminex HPX-87P column. HPX-87H gave improved recovery and reproducibility, and was chosen for routine quantification of hydrolyzed hemicellulose sugars. The purity of the solid cellulose fraction also improved with higher temperature. The optimum condition for obtaining enzymatic convertible cellulose (90%) was 10 minutes at 170 deg. C using a high carbonate concentration. The hemicellulose yield and recovery were significantly reduced under these conditions indicating that a simultaneous optimal utilization of the hemicellulose and cellulose was difficult. The oxygen pressure and sodium carbonate concentration had little effect on the solubilization of hemicellulose, however, by combining wet oxidation with alkaline hydrolysis the formation of 2-furfural, a known microbial inhibitor, was minimal. Much more hemicellulose and lignin were solubilized from the straw by wet oxidation than by steaming(an alternative process). More cellulose was solubilized (and degraded) by steaming than by wet oxidation. Overall carbohydrates 'losses' of 20.1% for steaming and 16.2% for wet oxidation were found. More 2-furfural was formed by steaming than by wet oxidation

  11. Development of chemical and biological processes for production of bioethanol. Optimization of the wet oxidation process and characterization of products

    Energy Technology Data Exchange (ETDEWEB)

    Bjerre, A.B.; Skammelsen Schmidt, A.

    1997-02-01

    The combination of the wet oxidation pretreatment process and alkaline hydrolysis was investigated in order to efficiently solubilize the hemicellulose, degrade the lignin, and open the solid crystalline cellulose structure of wheat straw lignocellulose without generating fermentation inhibitors. The effects of temperature, oxygen pressure, reaction time, and concentration of straw were evaluated. The degree of lignin degradation and hemicellulose solubilization increased with the reaction temperature and time. The optimum conditions were 15 minutes at 185 deg. C, producing 9.8 g/L hemicellulose. For quantification of the solubilized hemicellulose the best overall acid hydrolysis was obtained by treatment with 4 %w/v sulfuric acid for 10 minutes. The Aminex HPX-87H column was less sensitive towards impurities than the Aminex HPX-87P column. HPX-87H gave improved recovery and reproducibility, and was chosen for routine quantification of hydrolyzed hemicellulose sugars. The purity of the solid cellulose fraction also improved with higher temperature. The optimum condition for obtaining enzymatic convertible cellulose (90%) was 10 minutes at 170 deg. C using a high carbonate concentration. The hemicellulose yield and recovery were significantly reduced under these conditions indicating that a simultaneous optimal utilization of the hemicellulose and cellulose was difficult. The oxygen pressure and sodium carbonate concentration had little effect on the solubilization of hemicellulose, however, by combining wet oxidation with alkaline hydrolysis the formation of 2-furfural, a known microbial inhibitor, was minimal. Much more hemicellulose and lignin were solubilized from the straw by wet oxidation than by steaming(an alternative process). More cellulose was solubilized (and degraded) by steaming than by wet oxidation. Overall carbohydrates `losses` of 20.1% for steaming and 16.2% for wet oxidation were found. More 2-furfural was formed by steaming than by wet oxidation.

  12. Enhanced biological nutrient removal in modified carbon source division anaerobic anoxic oxic process with return activated sludge pre-concentration☆

    Institute of Scientific and Technical Information of China (English)

    Qin Lu; Haiyan Wu; Haoyan Li; Dianhai Yang

    2015-01-01

    A pilot-scale modified carbon source division anaerobic anoxic oxic (AAO) process with pre-concentration of returned activated sludge (RAS) was proposed in this study for the enhanced biological nutrient removal (BNR) of municipal wastewater with limited carbon source. The influent carbon source was fed in step while a novel RAS pre-concentration tank was adopted to improve BNR efficiency, and the effects of an influent carbon source distribution ratio and a RAS pre-concentration ratio were investigated. The results show that the removal efficiency of TN is mainly influenced by the carbon source distribution ratio while the TP removal relies on the RAS pre-concentration ratio. The optimum carbon source distribution ratio and RAS pre-concentration ratio are 60%and 50%, respectively, with an inner recycling ratio of 100%under the optimum steady operation of pilot test, reaching an average effluent TN concentration of 9.8 mg·L−1 with a removal efficiency of 63%and an average TP removal efficiency of 94%. The mechanism of nutrient removal is discussed and the kinetics is analyzed. The results reveal that the optimal carbon source distribution ratio provides sufficient denitrifying carbon source to each anoxic phase, reducing nitrate accumulation while the RAS pre-concentration ratio improves the condition of anaerobic zone to ensure the phosphorus release due to less nitrate in the returned sludge. Therefore, nitrifying bacteria, denitrifying bacteria and phosphorus accumulation organisms play an important role under the optimum condition, enhancing the performance of nutrient removal in this test.

  13. Proteins Encoded in Genomic Regions Associated with Immune-Mediated Disease Physically Interact and Suggest Underlying Biology

    DEFF Research Database (Denmark)

    Rossin, Elizabeth J.; Hansen, Kasper Lage; Raychaudhuri, Soumya;

    2011-01-01

    Genome-wide association studies (GWAS) have defined over 150 genomic regions unequivocally containing variation predisposing to immune-mediated disease. Inferring disease biology from these observations, however, hinges on our ability to discover the molecular processes being perturbed by these...... that the RA and CD networks have predictive power by demonstrating that proteins in these networks, not encoded in the confirmed list of disease associated loci, are significantly enriched for association to the phenotypes in question in extended GWAS analysis. Finally, we test our method in 3 non-immune...... risk variants. It has previously been observed that different genes harboring causal mutations for the same Mendelian disease often physically interact. We sought to evaluate the degree to which this is true of genes within strongly associated loci in complex disease. Using sets of loci defined in...

  14. Development of methodology for the fore cast of microbiological processes under transaction to industrial cultivation

    International Nuclear Information System (INIS)

    Proposals for possible cooperation with Western partners : To obtain the scale transfers method in laboratory condition of microorganisms cultivation to industrial conditions based on the parameters of spatial cultivation to industrial conditions based on the parameters of spatial heterogeneous hydrodynamics situation in bioreactors. The problem is the impossibility to count constructive elements and regimes of ferments operation which provided optimum environment for microorganisms vital functions because the hydrodynamic, biological and mass change processes are complicated. To solve the problems it is required to : - Investigate the different sides of physiology of culture-producer of Biologically Active Substances (hereinafter BAS) - Investigate the interrelation between the stirring and biological transformation in microorganism cells - Analyze and search main tendencies required to control biosynthesis (BAS) processes and reproduction of biosynthesis results at the cultivation change scale - Analyze technical properties of the reactor and the revealing of the spatial heterogeneous hydrodynamics situation at the different scales of bioreactor parameters - Investigate cinematic energy mediums field in the different bioreactor scales - Obtain the criteria dependencies estimating the irregularity of the stirrings intensity - Prepare the methodological foundations of microbiological processes forecast required to introduce to the industrial biosynthesis environment Expected results : To detect the comparable regimes of bioreactor operation in order to achieve equal production range and realize the scale-up method

  15. Influence of biological products on the growth and development of large-fruited cranberry under greenhouse conditions

    Directory of Open Access Journals (Sweden)

    Derkowska Edyta

    2015-06-01

    Full Text Available The aim of this study was to determine the influence of various biological fertilizers on the growth and development of plants of the large-fruited cranberry and the degree of mycorrhizal association in their roots under controlled conditions. Plants of the ‘Pilgrim’, ‘Stevens’ and ‘Ben Lear’ cranberry cultivars were planted in rhizoboxes filled with soils collected from the areas of Krojczyn and Motoga. The following experimental treatments with fertilizers were applied: control plants, plants fertilized with NPK, a bacterial-mycorrhizal consortium, Vinassa, lignite + Vinassa, Florovit Natura and the fertilizer Crop-UP. The study has shown that there was a tendency to stimulate the vegetative growth and development of cranberry plants through the use of bio-fertilizers and beneficial fungi obtained from the rhizosphere of these plants. There was a tendency for the fresh and dry weight of cranberry shoots to increase, especially in ‘Ben Lear’, under the influence of the bio-fertilizer Florovit Natura when compared with the control plants fertilized with NPK. Compared with the NPK control, all of the bio-fertilizers significantly increased mycorrhizal frequency in the roots of the tested plants of the large-fruited cranberry, with the exception of Crop-UP and lignite compost used in conjunction with Vinassa in ‘Stevens’. No statistically significant differences were obtained for plant size and root colonisation by ericoid fungi in the plants grown in the soil from the areas of Motoga and Krojczyn.

  16. Biological effects of radiation and chemical agents with special regard to repair processes

    International Nuclear Information System (INIS)

    It is reasonably certain that the introduction or increase of pollutants in the environment can augment mutagenic and carcinogenic effects. These effects are operationally definable, but the genetic organization and the underlying mechanisms of DNA repair, mutagenesis and carcinogenesis are so complex as to make the extrapolation of results from mutagenicity test data to carcinogenicity somewhat uncertain. The subject is reviewed. Recent discoveries in gene organization and expression include overlapping genes in bacteriophages, split genes, processing of RNA and splicing, translocation of genes in eukaryotes, inactivation of the X-chromosome in mammals, etc. Apart from the genetic regulation, plasmids, insertion sequences and mutators can additionally affect mutation frequency. Cancers due to gene mutations, viruses, chemicals and physical agents are known. However, little is known about the epigenetic mechanisms involved. The value of mutagenicity test data is beyond question, but in view of the extraordinary complexities encountered our extrapolations will be more sound if the data have the underpinning of basic information. (author)

  17. Enhanced biological processes associated with alopecia in polar bears (Ursus maritimus).

    Science.gov (United States)

    Bowen, Lizabeth; Miles, A Keith; Stott, Jeffrey; Waters, Shannon; Atwood, Todd

    2015-10-01

    Populations of wildlife species worldwide experience incidents of mass morbidity and mortality. Primary or secondary drivers of these events may escape classical detection methods for identifying microbial insults, toxin exposure, or additional stressors. In 2012, 28% of polar bears sampled in a study in the southern Beaufort Sea region of Alaska had varying degrees of alopecia that was concomitant with reduced body condition. Concurrently, elevated numbers of sick or dead ringed seals were detected in the southern Beaufort, Chukchi, and Bering seas in 2012, resulting in the declaration of an unusual mortality event (UME) by the National Oceanic and Atmospheric Administration (NOAA). The primary and possible ancillary causative stressors of these events are unknown, and related physiological changes within individual animals have been undetectable using classical diagnostic methods. Here we present an emerging technology as a potentially guiding investigative approach aimed at elucidating the circumstances responsible for the susceptibility of certain polar bears to observed conditions. Using transcriptomic analysis we identified enhanced biological processes including immune response, viral defense, and response to stress in polar bears with alopecia. Our results support an alternative mechanism of investigation into the causative agents that, when used proactively, could serve as an early indicator for populations and species at risk. We suggest that current or classical methods for investigation into events of unusual morbidity and mortality can be costly, sometimes unfocused, and often inconclusive. Advances in technology allow for implementation of a holistic system of surveillance and investigation that could provide early warning of health concerns in wildlife species important to humans. PMID:26005754

  18. Enhanced biological processes associated with alopecia in polar bears (Ursus maritimus)

    Science.gov (United States)

    Bowen, Lizabeth; Miles, A. Keith; Stott, Jeffrey L.; Waters, Shannon C.; Atwood, Todd C.

    2015-01-01

    Populations of wildlife species worldwide experience incidents of mass morbidity and mortality. Primary or secondary drivers of these events may escape classical detection methods for identifying microbial insults, toxin exposure, or additional stressors. In 2012, 28% of polar bears sampled in a study in the southern Beaufort Sea region of Alaska had varying degrees of alopecia that was concomitant with reduced body condition. Concurrently, elevated numbers of sick or dead ringed seals were detected in the southern Beaufort, Chukchi, and Bering seas in 2012, resulting in the declaration of an unusual mortality event (UME) by the National Oceanic and Atmospheric Administration (NOAA). The primary and possible ancillary causative stressors of these events are unknown, and related physiological changes within individual animals have been undetectable using classical diagnostic methods. Here we present an emerging technology as a potentially guiding investigative approach aimed at elucidating the circumstances responsible for the susceptibility of certain polar bears to observed conditions. Using transcriptomic analysis we identified enhanced biological processes including immune response, viral defense, and response to stress in polar bears with alopecia. Our results support an alternative mechanism of investigation into the causative agents that, when used proactively, could serve as an early indicator for populations and species at risk. We suggest that current or classical methods for investigation into events of unusual morbidity and mortality can be costly, sometimes unfocused, and often inconclusive. Advances in technology allow for implementation of a holistic system of surveillance and investigation that could provide early warning of health concerns in wildlife species important to humans.

  19. Biological processes in the water column of the South Atlantic bight

    Energy Technology Data Exchange (ETDEWEB)

    Paffenhoefer, G.A.; Yoder, J.A.

    1980-01-31

    Progress is reported on research conducted during 1979 on the biological oceanography of the South Atlantic Bight. The presentation consists of a number of published articles and abstracts of oral presentations. (ACR)

  20. Numerical analysis on coal-breaking process under high pressure water jet

    Energy Technology Data Exchange (ETDEWEB)

    Jin-hua Chen; Yun-pei Liang; Guo-qiang Cheng [Shandong University of Science and Technology, Qingdao (China)

    2009-09-15

    Based on the theory of nonlinear dynamic finite element, a control equation of coal and water jet was acquired in the coal breaking process under a water jet. A calculation model of coal breaking under a water jet was established; the fluid-structure coupling of water jet and coal was implemented by penalty function and convection calculation. The dynamic process of coal breaking under a water jet was simulated and analyzed by combining the united fracture criteria of the maximum tensile strain and the maximal shear strain in the two cases of damage to coal and damage failure to coal. 5 refs., 5 figs., 2 tabs.

  1. Numerical analysis on coal-breaking process under high pressure water jet

    Institute of Scientific and Technical Information of China (English)

    CHEN Jin-hua; LIANG Yun-pei; CHENG Guo-qiang

    2009-01-01

    Based on the theory of nonlinear dynamic finite element, the control equation of coal and water jet was acquired in the coal breaking process under a water jet. The calcu-lation model of coal breaking under a water jet was established; the fluid-structure cou-pling of water jet and coal was implemented by penalty function and convection calculation. The dynamic process of coal breaking under a water jet was simulated and analyzed by combining the united fracture criteria of the maximum tensile strain and the maximal shear strain in the two cases of damage to coal and damage failure to coal.

  2. BIOLOGY STUDENTS’ TEACHER OPINIONS ABOUT THE INTEGRATION OF ICT INTO THE LEARNING AND TEACHING PROCESS

    OpenAIRE

    Andreja Špernjak

    2014-01-01

    Biology laboratory work can be performed in various ways, even using information and communication technologies (ICT). Whether a teacher incorporates it into laboratory work is related to different factors, but educators can influence students’ beliefs about the value of ICT through their pedagogical practice. In our study, student teachers of biology gave opinions on how successfully university professors use ICT in the classroom, where they acquired most knowledge about ICT and their attitu...

  3. Biologically active collagen-based scaffolds: advances in processing and characterization

    OpenAIRE

    Yannas, I.V.; Tzeranis, D. S.; Harley, B A; So, P. T. C.

    2010-01-01

    A small number of type I collagen–glycosaminoglycan scaffolds (collagen–GAG scaffolds; CGSs) have unusual biological activity consisting primarily in inducing partial regeneration of organs in the adult mammal. Two of these are currently in use in a variety of clinical settings. CGSs appear to induce regeneration by blocking the adult healing response, following trauma, consisting of wound contraction and scar formation. Several structural determinants of biological activity have been identif...

  4. Modeling the Drug Discovery Process: The Isolation and Biological Testing of Eugenol from Clove Oil

    Science.gov (United States)

    Miles, William H.; Smiley, Patricia M.

    2002-01-01

    This experiment describes the isolation and biological testing of eugenol and neutral compounds from commercially available clove oil. By coupling the chemical separation of the components of clove oil (an experiment described in many introductory organic laboratory textbooks) with a simple antibiotic test, the students "discover" the biologically active compound in clove oil. This experiment models one of the primary methods used in the discovery of new pharmaceutical agents.

  5. Bioactive composite scaffolds for bone regeneration:from the process to the biological validation

    OpenAIRE

    Ronca, Alfredo

    2010-01-01

    In this work, we have discussed the preparation and characterization of composite scaffolds for bone regeneration. The scaffolds were made with different techniques: salt leaching / phase inversion,filament winding and stereolithography. The phase of preparation is followed by a characterization from a morphological, mechanical and biological point of view. Results were very promising especially regarding the biological response of the substrates that appear to be promising for future in v...

  6. Social inclusion enhances biological motion processing: A functional near-infrared spectroscopy study

    OpenAIRE

    Bolling, Danielle Z.; Pelphrey, Kevin A.; Kaiser, Martha D.

    2012-01-01

    Humans are especially tuned to the movements of other people. Neural correlates of this social attunement have been proposed to lie in and around the right posterior superior temporal sulcus (STS) region, which robustly responds to biological motion in contrast to a variety of non-biological motions. This response persists even when no form information is provided, as in point-light displays (PLDs). The aim of the current study was to assess the ability of functional near-infrared spectroscop...

  7. Study on Numerical Simulation of Mold Filling and Solidification Processes under Pressure Conditions

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    The mold filling and solidification simulation for the high pressure die casting (HPDC) and Iow pressure die casting(LPDC) processes were studied. A mathematical model considering the turbulent flow and heat transfer phenomenonduring the HPDC process has been established and parallel computation technique was used for the mold fillingsimulation of the process. The laminar flow characteristics of the LPDC process were studied and a simplified modelfor the mold filling process of wheel castings has been developed. For the solidification simulation under pressureconditions, the cyclic characteristics and the complicated boundary conditions were considered and techniques toimprove the computational efficiency are discussed. A new criterion for predicting shrinkage porosity of Al alloy underIow pressure condition has been developed in the solidification simulation process.

  8. Biological removal of iron and manganese in rapid sand filters - Process understanding of iron and manganese removal

    DEFF Research Database (Denmark)

    Lin, Katie

    biological processes and the interaction between them. Some studies have indicated a direct competition between iron and ammonium removal when oxygen is limited, and both processes may have a negative effect on the manganese removal (de Vet et al., 2009; Tekerlekopoulou et al., 2008). However the reasons for.......g. flocculation) and physical (e.g. membrane filtration) based technologies. The removal of dissolved manganese and iron is important. If manganese and iron enter the distribution system, the water will become coloured and have a metallic taste, and it may cause problems in the distribution network due to...... precipitation and corrosion. Manganese and iron can either be removed physico-chemically or biologically or combined. The physico-chemical oxidation and precipitation of manganese can theoretically be achieved by aeration, but this process is slow unless pH is raised far above neutral, making the removal of...

  9. Effects of Sludge Retention Times on Nutrient Removal and Nitrous Oxide Emission in Biological Nutrient Removal Processes

    Directory of Open Access Journals (Sweden)

    Bo Li

    2014-03-01

    Full Text Available Sludge retention time (SRT is an important factor affecting not only the performance of the nutrient removal and sludge characteristics, but also the production of secondary pollutants such as nitrous oxide (N2O in biological nutrient removal (BNR processes. Four laboratory-scale sequencing batch reactors (SBRs, namely, SBR5, SBR10, SBR20 and SBR40 with the SRT of 5 d, 10 d, 20 d and 40 d, respectively, were operated to examine effects of SRT on nutrient removal, activated sludge characteristics and N2O emissions. The removal of chemical oxygen demand or total phosphorus was similar under SRTs of 5–40 d, SRT mainly affected the nitrogen removal and the optimal SRT for BNR was 20 d. The molecular weight distribution of the effluent organic matters was in the range of 500–3,000 Da under SRTs of 5–40 d. The lowest concentration of the effluent soluble microbial products concentration was obtained at the SRT of 5 d. Nitrifier growth was limited at a short SRT and nitrite existed in the effluent of SBR5. With increasing SRTs, mixed liquor suspended solids concentration increased while the excess sludge production was reduced due to the high endogenous decay rate at high SRTs. Endogenous decay coefficients were 0.020 d−1, 0.036 d−1, 0.037 d−1 and 0.039 d−1 under SRTs of 5–40 d, respectively. In BNR, the N2O emission occurred mainly during the aerobic phase and its emission ratio decreased with increasing SRTs. The ratio between the N2O-N emission and the removed ammonium nitrogen in the aerobic phase was 5%, 3%, 1.8% and 0.8% at the SRT of 5 d, 10 d, 20 d and 40 d, respectively. With low concentrations of dissolved oxygen and high concentrations of oxidized nitrogen, the N2O emission was significantly accelerated due to heterotrophic denitrification activities.

  10. Multistage treatment system for raw leachate from sanitary landfill combining biological nitrification-denitrification/solar photo-Fenton/biological processes, at a scale close to industrial--biodegradability enhancement and evolution profile of trace pollutants.

    Science.gov (United States)

    Silva, Tânia F C V; Silva, M Elisabete F; Cunha-Queda, A Cristina; Fonseca, Amélia; Saraiva, Isabel; Sousa, M A; Gonçalves, C; Alpendurada, M F; Boaventura, Rui A R; Vilar, Vítor J P

    2013-10-15

    A multistage treatment system, at a scale close to the industrial, was designed for the treatment of a mature raw landfill leachate, including: a) an activated sludge biological oxidation (ASBO), under aerobic and anoxic conditions; b) a solar photo-Fenton process, enhancing the bio-treated leachate biodegradability, with and without sludge removal after acidification; and c) a final polishing step, with further ASBO. The raw leachate was characterized by a high concentration of humic substances (HS) (1211 mg CHS/L), representing 39% of the dissolved organic carbon (DOC) content, and a high nitrogen content, mainly in the form of ammonium nitrogen (>3.8 g NH4(+)-N/L). In the first biological oxidation step, a 95% removal of total nitrogen and a 39% mineralization in terms of DOC were achieved, remaining only the recalcitrant fraction, mainly attributed to HS (57% of DOC). Under aerobic conditions, the highest nitrification rate obtained was 8.2 mg NH4(+)-N/h/g of volatile suspended solids (VSS), and under anoxic conditions, the maximum denitrification rate obtained was 5.8 mg (NO2(-)-N + NO3(-)-N)/h/g VSS, with a C/N consumption ratio of 2.4 mg CH3OH/mg (NO2(-)-N + NO3(-)-N). The precipitation of humic acids (37% of HS) after acidification of the bio-treated leachate corresponds to a 96% DOC abatement. The amount of UV energy and H2O2 consumption during the photo-Fenton reaction was 30% higher in the experiment without sludge removal and, consequently, the reaction velocity was 30% lower. The phototreatment process led to the depletion of HS >80%, of low-molecular-weight carboxylate anions >70% and other organic micropollutants, thus resulting in a total biodegradability increase of >70%. The second biological oxidation allowed to obtain a final treated leachate in compliance with legal discharge limits regarding water bodies (with the exception of sulfate ions), considering the experiment without sludge. Finally, the high efficiency of the overall treatment

  11. Carbon exchange in biological soil crust communities under differential temperatures and soil water contents: implications for global change

    Science.gov (United States)

    Grote, Edmund E.; Belnap, Jayne; Housman, David C.; Sparks, Jed P.

    2010-01-01

    Biological soil crusts (biocrusts) are an integral part of the soil system in arid regions worldwide, stabilizing soil surfaces, aiding vascular plant establishment, and are significant sources of ecosystem nitrogen and carbon. Hydration and temperature primarily control ecosystem CO2 flux in these systems. Using constructed mesocosms for incubations under controlled laboratory conditions, we examined the effect of temperature (5-35 1C) and water content (WC, 20-100%) on CO2 exchange in light cyanobacterially dominated) and dark cyanobacteria/lichen and moss dominated) biocrusts of the cool Colorado Plateau Desert in Utah and the hot Chihuahuan Desert in New Mexico. In light crusts from both Utah and New Mexico, net photosynthesis was highest at temperatures 430 1C. Net photosynthesis in light crusts from Utah was relatively insensitive to changes in soil moisture. In contrast, light crusts from New Mexico tended to exhibit higher rates of net photosynthesis at higher soil moisture. Dark crusts originating from both sites exhibited the greatest net photosynthesis at intermediate soil water content (40-60%). Declines in net photosynthesis were observed in dark crusts with crusts from Utah showing declines at temperatures 425 1C and those originating from New Mexico showing declines at temperatures 435 1C. Maximum net photosynthesis in all crust types from all locations were strongly influenced by offsets in the optimal temperature and water content for gross photosynthesis compared with dark respiration. Gross photosynthesis tended to be maximized at some intermediate value of temperature and water content and dark respiration tended to increase linearly. The results of this study suggest biocrusts are capable of CO2 exchange under a wide range of conditions. However, significant changes in the magnitude of this exchange should be expected for the temperature and precipitation changes suggested by current climate models.

  12. Do new Access and Benefit Sharing procedures under the Convention on Biological Diversity threaten the future of biological control? Supplemental material (case studies, natural enemy releases, country views concerning ABS)

    NARCIS (Netherlands)

    Cock, M.J.W.; Lenteren, van J.C.; Brodeur, J.; Barratt, I.P.; Bigler, F.; Bolckmans, K.; Cônsoli, F.L.; Haas, F.; Mason, P.G.; Parra, J.R.P.

    2010-01-01

    Under the Convention on Biological Diversity (CBD) countries have sovereign rights over their genetic resources. Agreements governing the access to these resources and the sharing of the benefits arising from their use need to be established between involved parties [i.e. Access and Benefit Sharing

  13. Physical, chemical, and biological properties of soil under soybean cultivation and at an adjacent rainforest in Amazonia

    Directory of Open Access Journals (Sweden)

    Troy Patrick Beldini

    2015-11-01

    Full Text Available Land-use change in the Amazon basin has occurred at an accelerated pace during the last decade, and it is important that the effects induced by these changes on soil properties are better understood. This study investigated the chemical, physical, and biological properties of soil in a field under cultivation of soy and rice, and at an adjacent primary rain forest. Increases in soil bulk density, exchangeable cations and pH were observed in the soy field soil. In the primary forest, soil microbial biomass and basal respiration rates were higher, and the microbial community was metabolically more efficient. The sum of basal respiration across the A, AB and BA horizons on a mass per area basis ranged from 7.31 to 10.05 Mg CO2-C ha-1yr-1, thus yielding estimates for total soil respiration between 9.6 and 15.5 Mg CO2-C ha-1yr-1 across sites and seasons. These estimates are in good agreement with literature values for Amazonian ecosystems. The estimates of heterotrophic respiration made in this study help to further constrain the estimates of autotrophic soil respiration and will be useful for monitoring the effects of future land-use in Amazonian ecosystems.

  14. Dryland biological soil crust cyanobacteria show unexpected decreases in abundance under long-term elevated CO2

    Science.gov (United States)

    Steven, Blaire; Gallegos-Graves, La Verne; Yeager, Chris M.; Belnap, Jayne; Evans, R. David; Kuske, Cheryl R.

    2012-01-01

    Biological soil crusts (biocrusts) cover soil surfaces in many drylands globally. The impacts of 10 years of elevated atmospheric CO2 on the cyanobacteria in biocrusts of an arid shrubland were examined at a large manipulated experiment in Nevada, USA. Cyanobacteria-specific quantitative PCR surveys of cyanobacteria small-subunit (SSU) rRNA genes suggested a reduction in biocrust cyanobacterial biomass in the elevated CO2 treatment relative to the ambient controls. Additionally, SSU rRNA gene libraries and shotgun metagenomes showed reduced representation of cyanobacteria in the total microbial community. Taxonomic composition of the cyanobacteria was similar under ambient and elevated CO2 conditions, indicating the decline was manifest across multiple cyanobacterial lineages. Recruitment of cyanobacteria sequences from replicate shotgun metagenomes to cyanobacterial genomes representing major biocrust orders also suggested decreased abundance of cyanobacteria sequences across the majority of genomes tested. Functional assignment of cyanobacteria-related shotgun metagenome sequences indicated that four subsystem categories, three related to oxidative stress, were differentially abundant in relation to the elevated CO2 treatment. Taken together, these results suggest that elevated CO2 affected a generalized decrease in cyanobacteria in the biocrusts and may have favoured cyanobacteria with altered gene inventories for coping with oxidative stress.

  15. Biological testing and chemical analysis of process materials from an integrated two stage coal liquefaction: a status report

    Energy Technology Data Exchange (ETDEWEB)

    Wilson, B.W.; Buhl, P.; Moroni, E.C.

    1983-07-01

    Samples for chemical characterization and biological testing were obtained from ITSL runs 3LCF7, 3LCF8 and 3LCF9. Chemical analysis of these materials showed that SCT products were composed of fewer compounds than analogous materials from Solvent Refined Coal (SRC) processes. Major components in the SCT materials were three-, four-, five- and six-ring neutral polycyclic aromatic hydrocarbons (PAH). Methyl(C/sub 1/) and C/sub 2/ homologs of these compounds were present in relatively low concentrations, compared to their non-alkylated homologs. Organic nitrogen was primarily in the form of tertiary polycyclic aromatic nitrogen heterocycles and carbazoles. Little or no amino PAH (APAH) or cyano PAH were detected in samples taken during normal PDU operations, however, mutagenic APAH were produced during off-normal operation. Microbial mutagenicity appeared to be due mainly to the presence of APAH which were probably formed in the LC finer due to failure of the catalyst to promote deamination following carbon-nitrogen bond scission of nitrogen-containing hydroaromatics. This failure was observed for the off-normal runs where it was likely that the catalyst had been deactivated. Carcinogenic activity of ITSL materials as assessed by (tumors per animal) in the initiation/promotion mouse skin painting assay was slightly reduced for materials produced with good catalyst under normal operation compared to those collected during recycle of the LC Finer feed. Initiation activity of the latter samples did not appear to be significantly different from that of other coal derived materials with comparable boiling ranges. The observed initiation activity was not unexpected, considering analytical data which showed the presence of four-, five- and six-ring PAH in ITSL materials.

  16. Performance of an AnMBR pilot plant treating high-strength lipid wastewater: biological and filtration processes.

    Science.gov (United States)

    Ramos, C; García, A; Diez, V

    2014-12-15

    The performance of an anaerobic membrane bioreactor (AnMBR) treating wastewater with high levels of oil and grease content from a snacks factory is studied and its effectiveness is demonstrated. The relation between the reversible and the irreversible fouling rate and the fouling propensity of the fatty matter were evaluated under a subcritical flux of 7.9 and 8.3 L/m(2) h. Low Oil and Grease (O&G) concentrations of 500 mg/L produced an irreversible fouling rate of only 0.09 mbar/d, while the fouling rate was between 0.96 and 3.95 mbar/d for an average O&G concentration of 6 g/L. In spite of the significant increase in filtration resistance from 0.31 to 6.08 × 10(12) m(-1) after 40 days of continuous operation, the critical flux level hardly decreased from 11.1 to 9.7 L/(m(2) h). With regard to the biological process, after a start-up period with an organic loading rate (OLR) of below 2 kg COD/(m(3) d), the system was able to treat wastewater between 4.6 and 36 g O&G/L and the system remained stable for OLR at around 17 kg COD/(m(3) d) for 2.8 d, without inhibitory signals. Acclimated sludge quickly reached maximum methane production and digested substrate with high oil and grease content, observing an increase in palmitic acid the first days and constant levels of propionic acid while fatty acids were in the medium. PMID:25282089

  17. Microgravity Fluids for Biology, Workshop

    Science.gov (United States)

    Griffin, DeVon; Kohl, Fred; Massa, Gioia D.; Motil, Brian; Parsons-Wingerter, Patricia; Quincy, Charles; Sato, Kevin; Singh, Bhim; Smith, Jeffrey D.; Wheeler, Raymond M.

    2013-01-01

    Microgravity Fluids for Biology represents an intersection of biology and fluid physics that present exciting research challenges to the Space Life and Physical Sciences Division. Solving and managing the transport processes and fluid mechanics in physiological and biological systems and processes are essential for future space exploration and colonization of space by humans. Adequate understanding of the underlying fluid physics and transport mechanisms will provide new, necessary insights and technologies for analyzing and designing biological systems critical to NASAs mission. To enable this mission, the fluid physics discipline needs to work to enhance the understanding of the influence of gravity on the scales and types of fluids (i.e., non-Newtonian) important to biology and life sciences. In turn, biomimetic, bio-inspired and synthetic biology applications based on physiology and biology can enrich the fluid mechanics and transport phenomena capabilities of the microgravity fluid physics community.

  18. Remediation of PCB-contaminated soils. Risk analysis of biological in situ processes

    Energy Technology Data Exchange (ETDEWEB)

    Rein, Arno

    2006-12-08

    Biological in situ measures can be efficient and cost effective options for the remediation of contaminated sites. However, the accepted application requires a detailed and reliable analysis of potential impacts. An important objective is to quantify the potential of contaminant degradation and metabolite formation. This thesis addresses a quantitative multimedia risk assessment. Methodologies and tools were developed for this objective and applied to evaluate in situ bioremediation of soils contaminated with polychlorinated biphenyls (PCBs). Soil bacteria in conjunction with plant roots were addressed (rhizoremediation) with a focus on the use of genetically modified microorganisms (GMOs). PCBs are known to be harmful compounds that are ubiquitously distributed in the environment. PCB contaminations in soil and groundwater were identified as important problems. 209 different congeners are sterically possible, but not all are of environmental significance. PCB congeners of concern were evaluated with respect to their potential toxicity, environmental occurrence and mobility. For this objective, congener specific data on the toxicity potential and the frequency in environmental matrices were collected. To quantify the mobility potential, multimedia modelling was performed applying deterministic and probabilistic procedures. 56 PCB congeners of concern were evaluated, and multimedia risk assessments of PCB-contaminated soils should concentrate on this group. Kinetics parameters were specified for degradation experiments with individual PCB congeners in solution and different bacterial strains. These laboratory assays were performed with wild-type Burkholderia sp. strain LB400 and the genetically modified Pseudomonas fluorescens strains F113pcb and F113L::1180. The F113 derivatives demonstrated a good survival ability in willow (Salix sp.) rhizosphere (mesocosm experiments). Therefore, and due to high depletion rates, rhizoremediation with F113L::1180 and willow

  19. Quantitative proteomics reveals differential biological processes in healthy neonatal cord neutrophils and adult neutrophils

    KAUST Repository

    Zhu, Jiang

    2014-06-11

    Neonatal neutrophils are characterized by the immaturity of bactericidal mechanisms that contributes largely to neonatal mortality. However, underlying molecular mechanism associated with the immaturity remains incompletely understood. In this study, we performed comparative proteomic analysis on neonatal neutrophils derived from human cord blood and adult peripheral neutrophils. A total of 1332 proteins were identified and quantified, and 127 proteins were characterized as differentially expressed between adult and cord neutrophils. The differentially expressed proteins are mapped in KEGG pathways into five clusters and indicated impaired functions of neonatal neutrophils in proteasome, lysosome, phagosome, and leukocyte transendothelial migration. In particular, many proteins associated with NETosis, a critical mechanism for antimicrobial process and auto-clearance, were also found to be downregulated in cord neutrophils. This study represents a first comparative proteome profiling of neonatal and adult neutrophils, and provides a global view of differentially expressed proteome for enhancing our understanding of their various functional difference. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  20. Study on Decision Process and Strategy Choice Behavior under Multimode Choice

    Directory of Open Access Journals (Sweden)

    Huanmei Qin

    2015-01-01

    Full Text Available Information Display Board is used to design an experimental survey and dynamic decision process data are retrieved under a multimode choice scenario with car, bus and subway, and park and ride. It is concluded that car travelers who will switch to choosing park and ride need more decision time to compare it with the existing modes (car, bus and subway and tend to mainly use compensatory decision strategies in the decision process. The most commonly used decision strategy for travelers is the combined strategy under the multimode choice scenario. Correlation analysis shows that the influencing factors of age, whether the travelers have ever used park and ride, and decision time highly correlate with decision strategy choice. These conclusions have a certain reference value for theory research of decision process under multimode choice.