NSF-Sponsored Biological and Chemical Oceanography Data Management Office

Science.gov (United States)

Allison, M. D.; Chandler, C. L.; Copley, N.; Galvarino, C.; Gegg, S. R.; Glover, D. M.; Groman, R. C.; Wiebe, P. H.; Work, T. T.; Biological; Chemical Oceanography Data Management Office

2010-12-01

Ocean biogeochemistry and marine ecosystem research projects are inherently interdisciplinary and benefit from improved access to well-documented data. Improved data sharing practices are important to the continued exploration of research themes that are a central focus of the ocean science community and are essential to interdisciplinary and international collaborations that address complex, global research themes. In 2006, the National Science Foundation Division of Ocean Sciences (NSF OCE) funded the Biological and Chemical Oceanography Data Management Office (BCO-DMO) to serve the data management requirements of scientific investigators funded by the National Science Foundation’s Biological and Chemical Oceanography Sections. BCO-DMO staff members work with investigators to manage marine biogeochemical, ecological, and oceanographic data and information developed in the course of scientific research. These valuable data sets are documented, stored, disseminated, and protected over short and intermediate time frames. One of the goals of the BCO-DMO is to facilitate regional, national, and international data and information exchange through improved data discovery, access, display, downloading, and interoperability. In May 2010, NSF released a statement to the effect that in October 2010, it is planning to require that all proposals include a data management plan in the form of a two-page supplementary document. The data management plan would be an element of the merit review process. NSF has long been committed to making data from NSF-funded research publicly available and the new policy will strengthen this commitment. BCO-DMO is poised to assist in creating the data management plans and in ultimately serving the data and information resulting from NSF OCE funded research. We will present an overview of the data management system capabilities including: geospatial and text-based data discovery and access systems; recent enhancements to data search tools; data

Research and Teaching: Implementation of Interactive Engagement Teaching Methods in a Physical Oceanography Course

Science.gov (United States)

Keiner, Louis E.; Gilman, Craig

2015-01-01

This study measures the effects of increased faculty-student engagement on student learning, success rates, and perceptions in a Physical Oceanography course. The study separately implemented two teaching methods that had been shown to be successful in a different discipline, introductory physics. These methods were the use of interactive…

The ecology of plankton in biological oceanography: a tribute to Marta Estrada’s task

Directory of Open Access Journals (Sweden)

Jordi Solé

2016-09-01

Full Text Available Plankton ecology has been the object of intense research and progress in the last few decades. This has been partly due to technological advances that have facilitated the multidisciplinary and high-resolution sampling of ecosystems and improved experimentation and analytical methodologies, and to sophisticated modelling. In addition, exceptional researchers have had the vision to integrate all these innovative tools to form a solid theoretical background in ecology. Here we provide an overview of the outstanding research work conducted by Professor Marta Estrada and her pioneering contribution to different areas of research in the last four decades. Her research in biological oceanography has mainly focussed on phytoplankton ecology, taxonomy and physiology, the functional structure of plankton communities, and physical and biological interactions in marine ecosystems. She has combined a variety of field and laboratory approaches and methodologies, from microscopy to satellite observations, including in-depth statistical data analysis and modelling. She has been a reference for scientists all over the world. Here, her contributions to plankton ecology are summarized by some of her students and closest collaborators, who had the privilege to share their science and everyday experiences with her.

West Hackberry Strategic Petroleum Reserve site brine-disposal monitoring, Year I report. Volume II. Physical and chemical oceanography. Final report

Energy Technology Data Exchange (ETDEWEB)

DeRouen, L.R.; Hann, R.W.; Casserly, D.M.; Giammona, C.; Lascara, V.J. (eds.)

1983-02-01

This project centers around the Strategic Petroleum Site (SPR) known as the West Hackberry salt dome which is located in southwestern Louisiana, and which is designed to store 241 million barrels of crude oil. Oil storage caverns are formed by injecting water into salt deposits, and pumping out the resulting brine. Studies described in this report were designed as follow-on studies to three months of pre-discharge characterization work, and include data collected during the first year of brine leaching operations. The objectives were to: (1) characterize the environment in terms of physical, chemical and biological attributes; (2) determine if significant adverse changes in ecosystem productivity and stability of the biological community are occurring as a result of brine discharge; and (3) determine the magnitude of any change observed. Contents of Volume II include: introduction; physical oceanography; estuarine hydrology and hydrography; analysis of discharge plume; and water and sediment quality.

Other relevant papers in physical oceanography

International Nuclear Information System (INIS)

Nyffeler, F.

1989-01-01

During the past few years, significant progress has occurred in the field of physical oceanography partly as a consequence of developing cooperation and international participation in well-coordinated ocean research programmes. Although these programs were not designed specifically to address CRESP problems, many have proved to be directly relevant to CRESP objectives. For example, MODE, POLYMODE, and Tourbillon were intensive site-specific experiments that included studies of dispersion processes throughout the water column. NOAMP and GME were also site specific, involved the entire water column, and even stressed near-bottom and suspended-sediment processes. Others, (e.g., WOCE) are larger in scope and include extensive observations of the general circulation of entire ocean basins. As a whole, they contribute immensely to improving the data base for exchange and transport processes and thereby for the verification and validation of both regional-scale and general-circulation ocean models. That, in turn, is directly relevant to radiological assessments. Selected papers deriving from experiments such as these are discussed and referenced below

Oceanography for Landlocked Classrooms. Monograph V.

Science.gov (United States)

Madrazo, Gerry M., Jr., Ed.; Hounshell, Paul B., Ed.

This monograph attempts to show the importance of bringing marine biology into science classrooms, discusses what makes the ocean so important and explains why oceanography should be included in the science curriculum regardless of where students live. Section I, "Getting Started," includes discussions on the following: (1) "Why Marine Biology?";…

Science review of the Beaufort Institute of Oceanography, the Halifax Fisheries Research Laboratory, and the St. Andrews Biological Station, 1990-91. Revue des sciences de l'Institut oceanographique de Bedford, du Laboratoire de recherche halieutique de Halifax, et de la Station biologique de St. Andrews, 1990-91

Energy Technology Data Exchange (ETDEWEB)

Smith, T E; Cook, J [eds.

1992-01-01

A review is presented of the research and survey programs being undertaken in 1990-91 at the Bedford Institute of Oceanography, the Halifax Fisheries Research Laboratory, and the St. Andrews Biological Station (all in Nova Scotia). The broad objectives of these programs are to perform applied research leading to the provision of advice on the management of marine and freshwater environments, including fisheries and offshore hydrocarbon resources; to perform targeted basic research in accordance with the mandates of Canada's Department of Fisheries and Oceans, Environment Canada, and Energy, Mines and Resources; to perform surveys and cartographic work; and to respond to major marine environmental emergencies. The research and survey work encompasses the fields of marine geology and geophysics, physical oceanography, marine chemistry, biological oceanography, fisheries research, seabird research, and navigational surveys and cartography. Topics of specific projects reviewed include marine pollution detection, phytoplankton profiling, seal populations, ocean mapping, geographic information systems, fish and invertebrate nutrition, shellfish culture, lobster habitat ecology, physics and biology of the Georges Bank frontal system, water-level instrumentation, data acquisition techniques, sea ice monitoring, salmon management, nearshore sedimentary processes, and oil/gas distribution in offshore basins. Separate abstracts have been prepared for three project reports from this review.

Assessment of the U.S. outer continental shelf environmental studies program. 1. Physical oceanography. Final report

International Nuclear Information System (INIS)

1990-01-01

Federal responsibility for oil and gas development on the U.S. outer continental shelf (OCS) resides with the Minerals Management Service (MMS) of the U.S. Department of the Interior (DOI). The DOI's Environmental Studies Program (ESP) is the program through which MMS conducts environmental studies on the OCS and collects information to prepare environmental impact statements (EISs). It appeared to MMS in 1986 that the time was ripe to assess the status of the present program and to explore the needs for future studies. MMS requested an evaluation of the adequacy and applicability of ESP studies, a review of the general state of knowledge in the appropriate disciplines, and recommendations for future studies. Three panels were established, one of which, the Physical Oceanography Panel, investigated the physical oceanographic aspects of the ESP, the subject of the report, which is the first of three in a series. In reviewing the ESP's physical oceanography program, the panel evaluated the quality and relevance of studies carried out in waters under federal control, which extend from the limits of state jurisdictions (3-12 miles offshore) and include the central and outer continental shelf waters and the continental slope

The International System of Units (SI) in Oceanography. Report of IAPSO Working Group on Symbols, Units and Nomenclature in Physical Oceanography (SUN). Unesco Technical Papers in Marine Science 45. IAPSO Publication Scientifique No. 32.

Science.gov (United States)

United Nations Educational, Scientific, and Cultural Organization, Paris (France). Div. of Marine Sciences.

This report introduces oceanographers to the International System of Units (SI) in physical oceanography. The SI constitutes a universal language, designed to be understood by all scientists. It facilitates their mutual comprehension and exchange of views and results of their work. The first part of the report is devoted to physical quantities,…

Using Oceanography to Support Active Learning

Science.gov (United States)

Byfield, V.

2012-04-01

Teachers are always on the lookout for material to give their brightest students, in order to keep them occupied, stimulated and challenged, while the teacher gets on with helping the rest. They are also looking for material that can inspire and enthuse those who think that school is 'just boring!' Oceanography, well presented, has the capacity to do both. As a relatively young science, oceanography is not a core curriculum subject (possibly an advantage), but it draws on the traditional sciences of biology, chemistry, physic and geology, and can provide wonderful examples for teaching concepts in school sciences. It can also give good reasons for learning science, maths and technology. Exciting expeditions (research cruises) to far-flung places; opportunities to explore new worlds, a different angle on topical debates such as climate change, pollution, or conservation can bring a new life to old subjects. Access to 'real' data from satellites or Argo floats can be used to develop analytical and problem solving skills. The challenge is to make all this available in a form that can easily be used by teachers and students to enhance the learning experience. We learn by doing. Active teaching methods require students to develop their own concepts of what they are learning. This stimulates new neural connections in the brain - the physical manifestation of learning. There is a large body of evidence to show that active learning is much better remembered and understood. Active learning develops thinking skills through analysis, problem solving, and evaluation. It helps learners to use their knowledge in realistic and useful ways, and see its importance and relevance. Most importantly, properly used, active learning is fun. This paper presents experiences from a number of education outreach projects that have involved the National Oceanography Centre in Southampton, UK. All contain some element of active learning - from quizzes and puzzles to analysis of real data from

Proceedings of a workshop on physical oceanography related to the subseabed disposal of high-level nuclear waste

International Nuclear Information System (INIS)

Marietta, M.G.

1981-04-01

At this workshop a group of expert scientists: (1) assessed the current state of knowledge with regard to the physical oceanographic questions that must be answered generally if high level nuclear waste is to be disposed of on or under the seabed; (2) discussed physical oceanographic science necessarily related to the US Subseabed Disposal Program; (3) recommended necessary research; and (4) identified other ongoing programs with which important liaisons should be made and continued. This report is a collection of workshop presentations, and recommendations, and a synthesis of topical group recommendations into a unified statement of research needs. The US Seabed Disposal Program is described. The goal is to assess the technical, environmental and engineering feasibility of seabed disposal. The environmental studies program will assess possible ecosystem and health effects from radionuclides which may be released due to accidental leakage. Discussion on the following topics are also included: bottom boundary layer; mixing across isopycnal surfaces; circulation modeling; mesoscale dispersion; deep circulation of the Pacific Ocean; vertical transport at edges; instrumentation; chemical oceanography; plutonium distribution in the Pacific; biology report; chemical dumping report; and low-level waste report

Oceanography of the Chilean Patagonia

Science.gov (United States)

Pantoja, Silvio; Luis Iriarte, José; Daneri, Giovanni

2011-03-01

Chilean Patagonia is one of the most extended fjord regions in the world that covers nearly 240,000 km 2 with an extremely complex coastline and topography in one of the least densely populated areas of the country (1-8 inhabitants every 10 km 2). In recent years, the area has been undergoing somewhat intense pressure since several commercial projects in hydroelectricity, tourism, and commercial salmon and mytilid cultures have been developed, or are in progress. Concomitantly, several large research programs have been devised to study the physical, chemical, and biological environment of Patagonia, such as the CIMAR FIORDO, and recently COPAS Sur-Austral based at Universidad de Concepcion, that attempts to close the bridge between oceanographic knowledge and its use by society. In this introductory article we summarize the collection of papers comprising this Special Issue of Continental Shelf Research. These papers deal with aspects of regional oceanography and geology, inorganic and organic geochemistry, ecology of pelagic and benthic organisms, and past changes in productivity.

Meteorology, physical oceanography, transport of water, biogeochemistry, and other parameters collected at fixed locations in the open ocean from the OceanSITES network

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This collection comprises data covering meteorology, physical oceanography, transport of water, biogeochemistry, and parameters relevant to the carbon cycle, ocean...

The status of coastal oceanography in heavily impacted Yellow and East China Sea: Past trends, progress, and possible futures

Science.gov (United States)

Wang, Xiao Hua; Cho, Yang-Ki; Guo, Xinyu; Wu, Chau-Ron; Zhou, Junliang

2015-09-01

Coastal environments are a key location for transport, commercial, residential and defence infrastructure, and have provided conditions suitable for economic growth. They also fulfil important cultural, recreational and aesthetic needs; have intrinsic ecosystem service values; and provide essential biogeochemical functions such as primary productivity, nutrient cycling and water filtration. The rapid expansion in economic development and anticipated growth of the population in the coastal zones along the Yellow and East China Sea basin has placed this region under intense multiple stresses. Here we aim to: 1) synthesize the new knowledge/science in coastal oceanography since 2010 within the context of the scientific literature published in English; 2) report on a citation analysis that assesses whether new research topics have emerged and integrated over time, indicate the location of modelling and field-based studies; and 3) suggest where the new research should develop for heavily impacted estuaries and coastal seas of East Asia. The conclusions of the synthesis include: 1) China has emerged as a dominant force in the region in producing scientific literature in coastal oceanography, although the area of publications has shifted from its traditional fields such as physical oceanography; 2) there has been an increasing number of publications with cross-disciplinary themes between physical oceanography and other fields of the biological, chemical, and geological disciplines, but vigorous and systematic funding mechanisms are still lacking to ensure the viability of large scale multi-disciplinary teams and projects in order to support trans-disciplinary research and newly emerging fields; 3) coastal oceanography is responding to new challenges, with many papers studying the impacts of human activities on marine environment and ecology, but so far very few studying management and conservation strategies or offering policy solutions.

Dissertations Initiative for the Advancement of Limnology and Oceanography (DIALOG)

Science.gov (United States)

1994-01-01

The DIALOG Program was founded by the American Society of Limnology and Oceanography (ASLO), in order to reduce the historical, institutional and philosophical barriers that limit the exchange of information between limnologists and oceanographers, and to foster interdisciplinary and inter-institutional research. This was achieved by targeting a recent cohort of Ph.D. recipients whose work included a biological component of limnology or oceanography. The program included: (1) publication of the submitted Ph.D. dissertation abstracts; (2) a symposium to facilitate exchange across institutions and disciplines; and (3) establishment of a centralized data base for applicant characterization and tracking.

High-precision GPS autonomous platforms for sea ice dynamics and physical oceanography

Science.gov (United States)

Elosegui, P.; Wilkinson, J.; Olsson, M.; Rodwell, S.; James, A.; Hagan, B.; Hwang, B.; Forsberg, R.; Gerdes, R.; Johannessen, J.; Wadhams, P.; Nettles, M.; Padman, L.

2012-12-01

Project "Arctic Ocean sea ice and ocean circulation using satellite methods" (SATICE), is the first high-rate, high-precision, continuous GPS positioning experiment on sea ice in the Arctic Ocean. The SATICE systems collect continuous, dual-frequency carrier-phase GPS data while drifting on sea ice. Additional geophysical measurements also collected include ocean water pressure, ocean surface salinity, atmospheric pressure, snow-depth, air-ice-ocean temperature profiles, photographic imagery, and others, enabling sea ice drift, freeboard, weather, ice mass balance, and sea-level height determination. Relatively large volumes of data from each buoy are streamed over a satellite link to a central computer on the Internet in near real time, where they are processed to estimate the time-varying buoy positions. SATICE system obtains continuous GPS data at sub-minute intervals with a positioning precision of a few centimetres in all three dimensions. Although monitoring of sea ice motions goes back to the early days of satellite observations, these autonomous platforms bring out a level of spatio-temporal detail that has never been seen before, especially in the vertical axis. These high-resolution data allows us to address new polar science questions and challenge our present understanding of both sea ice dynamics and Arctic oceanography. We will describe the technology behind this new autonomous platform, which could also be adapted to other applications that require high resolution positioning information with sustained operations and observations in the polar marine environment, and present results pertaining to sea ice dynamics and physical oceanography.

Oceanography related to deep sea waste disposal

International Nuclear Information System (INIS)

1978-09-01

In connection with studies on the feasibility of the safe disposal of radioactive waste, from a large scale nuclear power programme, either on the bed of the deep ocean or within the deep ocean bed, preparation of the present document was commissioned by the (United Kingdom) Department of the Environment. It attempts (a) to summarize the present state of knowledge of the deep ocean environment relevant to the disposal options and assess the processes which could aid or hinder dispersal of material released from its container; (b) to identify areas of research in which more work is needed before the safety of disposal on, or beneath, the ocean bed can be assessed; and (c) to indicate which areas of research can or should be undertaken by British scientists. The programmes of international cooperation in this field are discussed. The report is divided into four chapters dealing respectively with geology and geophysics, geochemistry, physical oceanography and marine biology. (U.K.)

An oceanography summer school in Ghana, West Africa

Science.gov (United States)

Arbic, B. K.; Ansong, J. K.; Johnson, W.; Nyadjro, E. S.; Nyarko, E.

2016-02-01

Because oceanography is a global science, it clearly benefits from the existence of a world-wide network of oceanographers. As with most STEM disciplines, sub-Saharan Africa is not as well represented in the field of oceanography as it should be, given its large population. The need for oceanographers in sub-Saharan Africa is great, due to a long list of ocean-related issues affecting African development, including but not limited to fishing, oil drilling, sea level rise, coastal erosion, shipping, and piracy. We view this as an opportunity as well as a challenge. Many of the world's fastest growing economies are in sub-Saharan Africa, and STEM capacity building could further fuel this growth. With support from the US National Science Foundation, we ran an oceanography summer school from August 24-27, 2015, at the Regional Maritime University (RMU) in Ghana, West Africa. This first summer school was lecture-based, with a focus on basic chemical oceanography, basic physical oceanography, ocean modeling, and satellite oceanography. About 35 participants came to almost every lecture, and about 20 other participants came to some of the lectures as their time permitted. The participants included RMU faculty, 12 students from the Kwame Nkrumah University of Science and Technology, one Associate Oceanographer from the University of Ghana, and some participants from private sector companies and Ghanaian governmental agencies. There were long and lively discussions at the end of each lecture, and there was a lengthy discussion at the conclusion of the school on how to improve future summer schools. In 2016 and 2017, we plan to divide into smaller groups so that participants can pursue their particular interests in greater depth, and to allow time for student presentations. We also plan to begin exploring the potential for research partnerships, and to utilize distance learning to involve more faculty and students from locations throughout Ghana and perhaps from even other

From satellite altimetry to Argo and operational oceanography: three revolutions in oceanography

Directory of Open Access Journals (Sweden)

P. Y. Le Traon

2013-10-01

Full Text Available The launch of the French/US mission Topex/Poseidon (T/P (CNES/NASA in August 1992 was the start of a revolution in oceanography. For the first time, a very precise altimeter system optimized for large-scale sea level and ocean circulation observations was flying. T/P alone could not observe the mesoscale circulation. In the 1990s, the ESA satellites ERS-1/2 were flying simultaneously with T/P. Together with my CLS colleagues, we demonstrated that we could use T/P as a reference mission for ERS-1/2 and bring the ERS-1/2 data to an accuracy level comparable to T/P. Near-real-time high-resolution global sea level anomaly maps were then derived. These maps have been operationally produced as part of the SSALTO/DUACS system for the last 15 yr. They are now widely used by the oceanographic community and have contributed to a much better understanding and recognition of the role and importance of mesoscale dynamics. Altimetry needs to be complemented with global in situ observations. At the end of the 90s, a major international initiative was launched to develop Argo, the global array of profiling floats. This has been an outstanding success. Argo floats now provide the most important in situ observations to monitor and understand the role of the ocean on the earth climate and for operational oceanography. This is a second revolution in oceanography. The unique capability of satellite altimetry to observe the global ocean in near-real-time at high resolution and the development of Argo were essential for the development of global operational oceanography, the third revolution in oceanography. The Global Ocean Data Assimilation Experiment (GODAE was instrumental in the development of the required capabilities. This paper provides an historical perspective on the development of these three revolutions in oceanography which are very much interlinked. This is not an exhaustive review and I will mainly focus on the contributions we made together with many

Current and future prospects for the application of systematic theoretical methods to the study of problems in physical oceanography

Energy Technology Data Exchange (ETDEWEB)

Constantin, A., E-mail: adrian.constantin@kcl.ac.uk [Department of Mathematics, King' s College London, Strand, London WC2R 2LS (United Kingdom); Faculty of Mathematics, University of Vienna, Oskar-Morgenstern-Platz 1, 1090 Vienna (Austria); Johnson, R.S., E-mail: r.s.johnson@ncl.ac.uk [School of Mathematics & Statistics, Newcastle University, Newcastle upon Tyne NE1 7RU (United Kingdom)

2016-09-07

Highlights: • Systematic theoretical methods in studies of equatorial ocean dynamics. • Linear wave-current interactions in stratified flows. • Exact solutions – Kelvin waves, azimuthal non-uniform currents. • Three-dimensional nonlinear currents. • Hamiltonian formulation for the governing equations and for structure-preserving/enhancing approximations. - Abstract: This essay is a commentary on the pivotal role of systematic theoretical methods in physical oceanography. At some level, there will always be a conflict between theory and experiment/data collection: Which is pre-eminent? Which should come first? This issue appears to be particularly marked in physical oceanography, to the extreme detriment of the development of the subject. It is our contention that the classical theory of fluids, coupled with methods from the theory of differential equations, can play a significant role in carrying the subject, and our understanding, forward. We outline the philosophy behind a systematic theoretical approach, highlighting some aspects of equatorial ocean dynamics where these methods have already been successful, paving the way for much more in the future and leading, we expect, to the better understanding of this and many other types of ocean flow. We believe that the ideas described here promise to reveal a rich and beautiful dynamical structure.

Meteorology Products - Naval Oceanography Portal

Science.gov (United States)

section Advanced Search... Sections Home Time Earth Orientation Astronomy Meteorology Oceanography Ice You are here: Home › FNMOC › Meteorology Products FNMOC Logo FNMOC Navigation Meteorology Products Oceanography Products Tropical Applications Climatology and Archived Data Info Meteorology Products Global

A Source Book for Teaching Chemical Oceanography.

Science.gov (United States)

Loder, Theodore C.; Glibert, Patricia M.

Chemical oceanography or marine chemistry are taught in many colleges and universities. This publication provides sources for instructors of such courses. The first section of this report is a detailed composite outline of a course in chemical oceanography. It includes fundamental topics taught in many chemical oceanography classes. The outline…

Physics and biology

International Nuclear Information System (INIS)

Frauenfelder, H.

1988-01-01

The author points out that the coupling between physics and biology is becoming closer as time goes on. He tries to show that physical studies on biological systems not only yield insight into biology but also provide results of interest to physics. Biological systems are extremly complex system. Ideally one would like to understand the behavior of such systems in terms of the behavior of its constituent atoms. Since in small organisms this may be 10 20 atoms, it is clear these are not simple many-body systems. He reviews the basic elements of cells and then considers the broader questions of structure, complexity, and function, which must be looked at on levels from the cell to the organism. Despite the vast amount of observational material already in existence, biophysics and biological physics are only at a beginning. We can expect that physics will continue to interact strongly with biology. Actually, the connection also includes chemistry and mathematics. New tools that become available in physics will continue to be applied to biological problems. We can expect that the flow of information will not be one way; biological systems will provide new information on many old and new parts of physics, from reaction theory and transport phenomena to complexity, cooperativity, and nonlinear processes

The Fleet Numerical Meteorology and Oceanography Center (FNMOC) - Naval

Science.gov (United States)

Meteorology Oceanography Ice You are here: Home › FNMOC FNMOC Logo FNMOC Navigation Meteorology Products Oceanography Products Tropical Applications Climatology and Archived Data Info The Fleet Numerical Meteorology and Oceanography Center (FNMOC) The Fleet Numerical Meteorology and Oceanography Center (FNMOC

Mass spectrometry in oceanography

International Nuclear Information System (INIS)

Aggarwal, Suresh K.

2000-01-01

Mass spectrometry plays an important role in oceanography for various applications. Different types of inorganic as well as organic mass spectrometric techniques are being exploited world-wide to understand the different aspects of marine science, for palaeogeography, palaeoclimatology and palaeoecology, for isotopic composition and concentrations of different elements as well as for speciation studies. The present paper reviews some of the applications of atomic mass spectrometric techniques in the area of oceanography

A New Data Management System for Biological and Chemical Oceanography

Science.gov (United States)

Groman, R. C.; Chandler, C.; Allison, D.; Glover, D. M.; Wiebe, P. H.

2007-12-01

The Biological and Chemical Oceanography Data Management Office (BCO-DMO) was created to serve PIs principally funded by NSF to conduct marine chemical and ecological research. The new office is dedicated to providing open access to data and information developed in the course of scientific research on short and intermediate time-frames. The data management system developed in support of U.S. JGOFS and U.S. GLOBEC programs is being modified to support the larger scope of the BCO-DMO effort, which includes ultimately providing a way to exchange data with other data systems. The open access system is based on a philosophy of data stewardship, support for existing and evolving data standards, and use of public domain software. The DMO staff work closely with originating PIs to manage data gathered as part of their individual programs. In the new BCO-DMO data system, project and data set metadata records designed to support re-use of the data are stored in a relational database (MySQL) and the data are stored in or made accessible by the JGOFS/GLOBEC object- oriented, relational, data management system. Data access will be provided via any standard Web browser client user interface through a GIS application (Open Source, OGC-compliant MapServer), a directory listing from the data holdings catalog, or a custom search engine that facilitates data discovery. In an effort to maximize data system interoperability, data will also be available via Web Services; and data set descriptions will be generated to comply with a variety of metadata content standards. The office is located at the Woods Hole Oceanographic Institution and web access is via http://www.bco-dmo.org.

Physical oceanography - Developing end-to-end models of the California Current Large Marine Ecosystem

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The purpose of this project is to develop spatially discrete end-to-end models of the California Current LME, linking oceanography, biogeochemistry, food web...

A Retrospective Self-Assessment of the SURFO Summer Internship Program in Oceanography

Science.gov (United States)

Pockalny, R. A.; Donohue, K. A.; Fliegler, J.

2009-12-01

The Summer Undergraduate Research Fellowships in Oceanography (SURFO) program at the Graduate School of Oceanography/University of Rhode Island is an NSF-funded Research Experience for Undergraduates site program with a programmatic research niche focused on quantitative aspects of Oceanography. Each summer-cohort includes 9-12 participants (rising seniors) who are paired with a primary research advisor and often with a graduate student mentor. The primary components of the 10-week program include a 4-week introductory phase and a 6-week core research phase. A retrospective self-assessment instrument gauged the confidence, attitude and comfort level of participants with; 1) core math and science subjects, 2) oceanography-related subjects, 3) research skills, and 4) SURFO and GSO staff. SURFO participants evaluated themselves at the start of the program, after the introductory phase, and at the end of the program. Participants were also asked to reassess their initial evaluations and provide an updated score. The pre-assessment results indicate that the program recruits students from the target group (e.g., strong physics and math backgrounds, but with limited exposure to oceanography). The results also indicate that the students are initially comfortable with their advising team, but not so comfortable with their research topic and research skills. The post-introductory phase results indicate large increases in comfort level with the advising team and the local research community yet little or no change is indicated for research skills. The final assessments show large changes in oceanography-content knowledge, research topic, and research skills. The retrospective reassessment indicates an initial overconfidence in most categories. Overall, the largest changes occurred during the core research portion of the program. These results reinforce the importance/effectiveness of authentic, hands-on, inquiry-based research for higher learning and training the next

Biological oceanography of the red oceanic system

Science.gov (United States)

Theil, Hjalmar; Weikert, Horst

1. In 1977, 1979 and 1980-81, investigations were carried out which aimed at evaluating the potential risks from mining metalliferous muds precipating in the Atlantis II Deep of the central Red Sea. This environmental research was initiated by the Saudi Sudanese Red Sea Joint Commission in order to avoid any danger for the Red Sea ecosystem. The broad environmental research programme coherent studies in physical, chemical, biological, and geological oceanography as well as toxicological investigations in the oceanic and in reef zones. We summarise the results from our biological fiels studies in the open sea. 2. The biological investigations were concentrated on the area of the Atlantis II Deep. Benthos was sampled between 700-2000m. For comparison a few samples were also taken further north in the central Red Sea, and to east and west along the flanking deep terraces (500-1000m). Plankton studies covered the total water column above the Deep, and were extended along the axial through to north and south. 3. Benthos sampling was carried out using a heavy closing trawl, a large box grab (box size 50 × 50 cm), Van Veen grabs and traps; photographic surveys were made a phototrap and a photosled. Community respiration was measured with a ship-board method using grab subsamples. Nutrient concentrations, seston and phytoplankton standing stocks as well as in situ primary production were determined from hydrocast samples. Data on zooplankton and micronekton composition and standing stock were obtained from samples collected using different multiple opening-and-closing nets equipped with 100 μm, 300 μm, and 1000 μm mesh sizes. Daily and ontogenetical vertical migration patterns were studied by comparisons of data from midday and midnight tows. 4. Throughout the whole area the sediment is a pteropod ooze containing low contentrations of organic matter; measured organic carbon and nitrogen contents were 0.5 and 0.05% respectively, and chloroplastic pigment equivalents

Oceanography Information System of Spanish Institute of Oceanography (IEO)

Science.gov (United States)

Tello, Olvido; Gómez, María; González, Sonsoles

2016-04-01

Since 1914, the Spanish Institute of Oceanography (IEO) performs multidisciplinary studies of the marine environment. In same case are systematic studies and in others are specific studies for special requirements (El Hierro submarine volcanic episode, spill Prestige, others.). Different methodologies and data acquisition techniques are used depending on studies aims. The acquired data are stored and presented in different formats. The information is organized into different databases according to the subject and the variables represented (geology, fisheries, aquaculture, pollution, habitats, etc.). Related to physical and chemical oceanography data, in 1964 was created the DATA CENTER of IEO (CEDO), in order to organize the data about physical and chemical variables, to standardize this information and to serve the international data network SeaDataNet. www.seadatanet.org. This database integrates data about temperature, salinity, nutrients, and tidal data. CEDO allows consult and download the data. http://indamar.ieo.es On the other hand, related to data about marine species in 1999 was developed SIRENO DATABASE. All data about species collected in oceanographic surveys carried out by researches of IEO, and data from observers on fishing vessels are incorporated in SIRENO database. In this database is stored catch data, biomass, abundance, etc. This system is based on architecture ORACLE. Due to the large amount of information collected over the 100 years of IEO history, there is a clear need to organize, standardize, integrate and relate the different databases and information, and to provide interoperability and access to the information. Consequently, in 2000 it emerged the first initiative to organize the IEO spatial information in an Oceanography Information System, based on a Geographical Information System (GIS). The GIS was consolidated as IEO institutional GIS and was created the Spatial Data Infrastructure of IEO (IDEO) following trend of INSPIRE. All

Estuarine Oceanography. CEGS Programs Publication Number 18.

Science.gov (United States)

Wright, F. F.

Estuarine Oceanography is one in a series of single-topic problem modules intended for use in undergraduate and earth science courses. Designed for those interested in coastal oceanography or limnology, the module is structured as a laboratory supplement for undergraduate college classes but should be useful at all levels. The module has two…

From biologically-inspired physics to physics-inspired biology From biologically-inspired physics to physics-inspired biology

Science.gov (United States)

Kornyshev, Alexei A.

2010-10-01

The conference 'From DNA-Inspired Physics to Physics-Inspired Biology' (1-5 June 2009, International Center for Theoretical Physics, Trieste, Italy) that myself and two former presidents of the American Biophysical Society—Wilma Olson (Rutgers University) and Adrian Parsegian (NIH), with the support of an ICTP team (Ralf Gebauer (Local Organizer) and Doreen Sauleek (Conference Secretary)), have organized was intended to establish stronger links between the biology and physics communities on the DNA front. The relationships between them were never easy. In 1997, Adrian published a paper in Physics Today ('Harness the Hubris') summarizing his thoughts about the main obstacles for a successful collaboration. The bottom line of that article was that physicists must seriously learn biology before exploring it and even having an interpreter, a friend or co-worker, who will be cooperating with you and translating the problems of biology into a physical language, may not be enough. He started his story with a joke about a physicist asking a biologist: 'I want to study the brain. Tell me something about it!' Biologist: 'First, the brain consists of two parts, and..' Physicist: 'Stop. You have told me too much.' Adrian listed a few direct avenues where physicists' contributions may be particularly welcome. This gentle and elegantly written paper caused, however, a stormy reaction from Bob Austin (Princeton), published together with Adrian's notes, accusing Adrian of forbidding physicists to attack big questions in biology straightaway. Twelve years have passed and many new developments have taken place in the biologist-physicist interaction. This was something I addressed in my opening conference speech, with my position lying somewhere inbetween Parsegian's and Austin's, which is briefly outlined here. I will first recall certain precepts or 'dogmas' that fly in the air like Valkyries, poisoning those relationships. Since the early seventies when I was a first year Ph

The social oceanography of top oceanic predators and the decline of sharks: A call for a new field

Science.gov (United States)

Jacques, Peter J.

2010-07-01

The decline of top oceanic predators (TOPs), such as great sharks, and worldwide erosion of the marine food web is among the most important functional changes in marine systems. Yet, even though human pressures on sharks are one of the most important factors in the collapse of TOPs, the social science of shark fishing has not kept pace with the biophysical science. Such a gap highlights the need for a marine social science, and this paper uses the case of sharks to illustrate some advances that a coherent marine social science community could bring to science and sustainability, and calls for the development of this new field. Social oceanography is proposed as a “discursive space” that will allow multiple social science and humanities disciplines to holistically study and bring insight to a diverse but essential community. Such a community will not provide answers for the physical sciences, but it will add a new understanding of the contingencies that riddle social behavior that ultimately interact with marine systems. Such a field should reflect the broad and diverse approaches, epistemologies, philosophies of science and foci that are in the human disciplines themselves. Social oceanography would complete the triumvirate of biological and physical oceanography where human systems profoundly impact these other areas. This paper tests the theory that institutional rules are contingent on social priorities and paradigms. I used content analysis of all available (1995-2006) State of the World Fisheries and Aquaculture (SOFIA) reports from the United Nations Food and Agricultural Organization (FAO) to measure the symbolic behavior-i.e., what they say-as an indication of the value of sharks in world fisheries. Similar tests were also performed for marine journals and the Convention on Migratory Species of Wild Animals to corroborate these findings. Then, I present an institutional analysis of all international capacity building and regulatory institutions as they

Oceanography Branch Hydrographic Database

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Oceanography group maintains and provides Conductivity/Temperature/Depth (CTD) instruments to all Center cruises for measuring water column profiles of...

Short Training Course in Oceanography. Red Sea & Gulf of Aden Programme (PERSGA).

Science.gov (United States)

Arab Organization for Education and Science, Cairo (Egypt).

This document presents a training course in oceanography intended for Junior Bachelor of Science (B.S.) graduates in physics, mathematics, chemistry, zoology, botany or geology to give them the minimum qualifications required to work in any of the marine science stations. This 14-week course, organized by the Arab League Educational, Cultural and…

Introduction to fisheries oceanography

Digital Repository Service at National Institute of Oceanography (India)

Sumitra-Vijayaraghavan

Fisheries oceanography can be applied to fisheries ecology, fisheries management and practical fishing. Physico-chemical parameters of the environment (temperature, currents, waves, light, oxygen and salinity) have profound effect on fish...

In the Footsteps of Roger Revelle: Seagoing Oceanography for Middle School Science

Science.gov (United States)

Brice, D.; Foley, S.; Knox, R. A.; Mauricio, P.

2007-12-01

Now in its fourth year, "In the Footsteps of Roger Revelle" (IFRR) is a middle school science education program that draws student interest, scientific content and coherence with National Science Standards from real-time research at sea in fields of physical science. As a successful collaboration involving Scripps Institution of Oceanography (SIO), Woods Hole Oceanographic Institution (WHOI), National Oceanic and Atmospheric Administration (NOAA), Office of Naval Research (ONR), National Science Foundation (NSF), San Diego County Office of Education (SDCOE), and San Marcos Middle School (SMMS), IFRR brings physical oceanography and related sciences to students at the San Marcos Middle School in real-time from research vessels at sea using SIO's HiSeasNet satellite communication system. With their science teacher on the ship as an education outreach specialist or ashore guiding students in their interactions with selected scientists at sea, students observe shipboard research being carried out live via videoconference, daily e-mails, interviews, digital whiteboard sessions, and web interaction. Students then research, design, develop, deploy, and field-test their own data-collecting physical oceanography instruments in their classroom. The online interactive curriculum encourages active inquiry with intellectually stimulating problem-solving, enabling students to gain critical insight and skill while investigating some of the most provocative questions of our time, and seeing scientists as role- models. Recent science test scores with IFRR students have shown significant increases in classes where this curriculum has been implemented as compared to other classes where the traditional curriculum has been used. IFRR has provided students in the San Diego area with a unique opportunity for learning about oceanographic research, which could inspire students to become oceanographers or at least scientifically literate citizens - a benefit for a country that depends

Key Concepts in Microbial Oceanography

Science.gov (United States)

Bruno, B. C.; Achilles, K.; Walker, G.; Weersing, K.; Team, A

2008-12-01

The Center for Microbial Oceanography: Research and Education (C-MORE) is a multi-institution Science and Technology Center, established by the National Science Foundation in 2006. C-MORE's research mission is to facilitate a more comprehensive understanding of the diverse assemblages of microorganisms in the sea, ranging from the genetic basis of marine microbial biogeochemistry including the metabolic regulation and environmental controls of gene expression, to the processes that underpin the fluxes of carbon, related bioelements, and energy in the marine environment. The C-MORE education and outreach program is focused on increasing scientific literacy in microbial oceanography among students, educators, and the general public. A first step toward this goal is defining the key concepts that constitute microbial oceanography. After lengthy discussions with scientists and educators, both within and outside C-MORE, we have arrived at six key concepts: 1) Marine microbes are very small and have been around for a long time; 2) Life on Earth could not exist without microbes; 3) Most marine microbes are beneficial; 4) Microbes are everywhere: they are extremely abundant and diverse; 5) Microbes significantly impact our global climate; and 6) There are new discoveries every day in the field of microbial oceanography. A C-MORE-produced brochure on these six key concepts will be distributed at the meeting. Advanced copies may be requested by email or downloaded from the C-MORE web site(http://cmore.soest.hawaii.edu/downloads/MO_key_concepts_hi-res.pdf). This brochure also includes information on career pathways in microbial oceanography, with the aim of broadening participation in the field. C-MORE is eager to work in partnership to incorporate these key concepts into other science literacy publications, particularly those involving ocean and climate literacy. We thank the following contributors and reviewers: P Chisholm, A Dolberry, and A Thompson (MIT); N Lawrence

Argo workstation: a key component of operational oceanography

Science.gov (United States)

Dong, Mingmei; Xu, Shanshan; Miao, Qingsheng; Yue, Xinyang; Lu, Jiawei; Yang, Yang

2018-02-01

Operational oceanography requires the quantity, quality, and availability of data set and the timeliness and effectiveness of data products. Without steady and strong operational system supporting, operational oceanography will never be proceeded far. In this paper we describe an integrated platform named Argo Workstation. It operates as a data processing and management system, capable of data collection, automatic data quality control, visualized data check, statistical data search and data service. After it is set up, Argo workstation provides global high quality Argo data to users every day timely and effectively. It has not only played a key role in operational oceanography but also set up an example for operational system.

The common extremalities in biology and physics maximum energy dissipation principle in chemistry, biology, physics and evolution

CERN Document Server

Moroz, Adam

2011-01-01

This book is the first unified systemic description of dissipative phenomena, taking place in biology, and non-dissipative (conservative) phenomena, which is more relevant to physics. Fully updated and revised, this new edition extends our understanding of nonlinear phenomena in biology and physics from the extreme / optimal perspective. The first book to provide understanding of physical phenomena from a biological perspective and biological phenomena from a physical perspective Discusses emerging fields and analysis Provides examples.

Towards physical principles of biological evolution

Science.gov (United States)

Katsnelson, Mikhail I.; Wolf, Yuri I.; Koonin, Eugene V.

2018-03-01

Biological systems reach organizational complexity that far exceeds the complexity of any known inanimate objects. Biological entities undoubtedly obey the laws of quantum physics and statistical mechanics. However, is modern physics sufficient to adequately describe, model and explain the evolution of biological complexity? Detailed parallels have been drawn between statistical thermodynamics and the population-genetic theory of biological evolution. Based on these parallels, we outline new perspectives on biological innovation and major transitions in evolution, and introduce a biological equivalent of thermodynamic potential that reflects the innovation propensity of an evolving population. Deep analogies have been suggested to also exist between the properties of biological entities and processes, and those of frustrated states in physics, such as glasses. Such systems are characterized by frustration whereby local state with minimal free energy conflict with the global minimum, resulting in ‘emergent phenomena’. We extend such analogies by examining frustration-type phenomena, such as conflicts between different levels of selection, in biological evolution. These frustration effects appear to drive the evolution of biological complexity. We further address evolution in multidimensional fitness landscapes from the point of view of percolation theory and suggest that percolation at level above the critical threshold dictates the tree-like evolution of complex organisms. Taken together, these multiple connections between fundamental processes in physics and biology imply that construction of a meaningful physical theory of biological evolution might not be a futile effort. However, it is unrealistic to expect that such a theory can be created in one scoop; if it ever comes to being, this can only happen through integration of multiple physical models of evolutionary processes. Furthermore, the existing framework of theoretical physics is unlikely to suffice

Connecting Oceanography and Music

Science.gov (United States)

Beauregard, J. L.

2016-02-01

Capturing and retaining the interest of non-science majors in science classes can be difficult, no matter what type of science. At Berklee College of Music, this challenge is especially significant, as all students are music majors. In my Introductory Oceanography course, I use a final project as a way for the students to link class material with their own interests. The students may choose any format to present their projects to the class; however, many students write and perform original music. The performances of ocean-themed music have become a huge draw of the Introductory Oceanography course. In an effort to expand the reach of this music, several colleagues and I organized the first Earth Day event at Berklee, `Earthapalooza 2015.' This event included performances of music originally written for the final projects, as well as other musical performances, poetry readings, guest talks, and information booths. Although the idea of an Earth Day event is not new, this event is unique in that student performances really resonate with the student audience. Additionally, since many of these students will enter professional careers in the performance and recording industries, the potential exists for them to expose large audiences to the issues of oceanography through music. In this presentation, I will play examples of original student compositions and show video of the live student performances. I will also discuss the benefits and challenges of the final projects and the Earth Day event. Finally, I will highlight the future plans to continue ocean-themed music at Berklee.

Basic radiotherapy physics and biology

CERN Document Server

Chang, David S; Das, Indra J; Mendonca, Marc S; Dynlacht, Joseph R

2014-01-01

This book is a concise and well-illustrated review of the physics and biology of radiation therapy intended for radiation oncology residents, radiation therapists, dosimetrists, and physicists. It presents topics that are included on the Radiation Therapy Physics and Biology examinations and is designed with the intent of presenting information in an easily digestible format with maximum retention in mind. The inclusion of mnemonics, rules of thumb, and reader-friendly illustrations throughout the book help to make difficult concepts easier to grasp. Basic Radiotherapy Physics and Biology is a

CSIR-National Institute of Oceanography

Digital Repository Service at National Institute of Oceanography (India)

Tapaswi, M.P.

CSIR-National Institute of Oceanography being one of its kind in the country The article describes the on-going researches and projects in contributing to the science in the field of Marine science....

The Physics of Proteins An Introduction to Biological Physics and Molecular Biophysics

CERN Document Server

Frauenfelder, Hans; Chan, Winnie S

2010-01-01

Physics and the life sciences have established new connections within the past few decades, resulting in biological physics as an established subfield with strong groups working in many physics departments. These interactions between physics and biology form a two-way street with physics providing new tools and concepts for understanding life, while biological systems can yield new insights into the physics of complex systems. To address the challenges of this interdisciplinary area, The Physics of Proteins: An Introduction to Biological Physics and Molecular Biophysics is divided into three interconnected sections. In Parts I and II, early chapters introduce the terminology and describe the main biological systems that physicists will encounter. Similarities between biomolecules, glasses, and solids are stressed with an emphasis on the fundamental concepts of living systems. The central section (Parts III and IV) delves into the dynamics of complex systems. A main theme is the realization that biological sys...

Simulation of annual cycles of phytoplankton, zooplankton and nutrients using a mixed layer model coupled with a biological model

OpenAIRE

Troupin, Charles

2006-01-01

In oceanography, the mixed layer refers to the near surface part of the water column where physical and biological variables are distributed quasi homogeneously. Its depth depends on conditions at the air-sea interface (heat and freshwater fluxes, wind stress) and on the characteristics of the flow (stratification, shear), and has a strong influence on biological dynamics. The aim of this work is to model the behaviour of the mixed layer in waters situated to the south of Gr...

Physics of biological membranes

Science.gov (United States)

Mouritsen, Ole G.

The biological membrane is a complex system consisting of an aqueous biomolecular planar aggregate of predominantly lipid and protein molecules. At physiological temperatures, the membrane may be considered a thin (˜50Å) slab of anisotropic fluid characterized by a high lateral mobility of the various molecular components. A substantial fraction of biological activity takes place in association with membranes. As a very lively piece of condensed matter, the biological membrane is a challenging research topic for both the experimental and theoretical physicists who are facing a number of fundamental physical problems including molecular self-organization, macromolecular structure and dynamics, inter-macromolecular interactions, structure-function relationships, transport of energy and matter, and interfacial forces. This paper will present a brief review of recent theoretical and experimental progress on such problems, with special emphasis on lipid bilayer structure and dynamics, lipid phase transitions, lipid-protein and lipid-cholesterol interactions, intermembrane forces, and the physical constraints imposed on biomembrane function and evolution. The paper advocates the dual point of view that there are a number of interesting physics problems in membranology and, at the same time, that the physical properties of biomembranes are important regulators of membrane function.

Basic concepts in oceanography

International Nuclear Information System (INIS)

Small, L.F.

1997-01-01

Basic concepts in oceanography include major wind patterns that drive ocean currents, and the effects that the earth's rotation, positions of land masses, and temperature and salinity have on oceanic circulation and hence global distribution of radioactivity. Special attention is given to coastal and near-coastal processes such as upwelling, tidal effects, and small-scale processes, as radionuclide distributions are currently most associated with coastal regions. (author)

Bridging Physics and Biology Using Resistance and Axons

Science.gov (United States)

Dyer, Joshua M.

2014-01-01

When teaching physics, it is often difficult to get biology-oriented students to see the relevance of physics. A complaint often heard is that biology students are required to take physics for the Medical College Admission Test (MCAT) as part of a "weeding out" process, but that they don't feel like they need physics for biology. Despite…

Bridging Physics and Biology Using Resistance and Axons

Science.gov (United States)

Dyer, Joshua M.

2014-11-01

When teaching physics, it is often difficult to get biology-oriented students to see the relevance of physics.1 A complaint often heard is that biology students are required to take physics for the Medical College Admission Test (MCAT) as part of a "weeding out" process, but that they don't feel like they need physics for biology. Despite this impression held by students, there have been calls for better physics education for future physicians and life scientists.2,3 Research is being performed to improve physics classes and labs by linking topics in biology and physics.4,5 Described here is a laboratory experiment covering the topics of resistance of materials and circuits/Kirchhoff's laws in a biology context with their direct application to neurons, axons, and electrical impulse transmission within animals. This experiment will also demonstrate the mechanism believed to cause multiple sclerosis. The apparatus was designed with low-cost and readily available materials in mind.

Biology-inspired AMO physics

Science.gov (United States)

Mathur, Deepak

2015-01-01

This Topical Review presents an overview of increasingly robust interconnects that are being established between atomic, molecular and optical (AMO) physics and the life sciences. AMO physics, outgrowing its historical role as a facilitator—a provider of optical methodologies, for instance—now seeks to partner biology in its quest to link systems-level descriptions of biological entities to insights based on molecular processes. Of course, perspectives differ when AMO physicists and biologists consider various processes. For instance, while AMO physicists link molecular properties and dynamics to potential energy surfaces, these have to give way to energy landscapes in considerations of protein dynamics. But there are similarities also: tunnelling and non-adiabatic transitions occur both in protein dynamics and in molecular dynamics. We bring to the fore some such differences and similarities; we consider imaging techniques based on AMO concepts, like 4D fluorescence microscopy which allows access to the dynamics of cellular processes, multiphoton microscopy which offers a built-in confocality, and microscopy with femtosecond laser beams to saturate the suppression of fluorescence in spatially controlled fashion so as to circumvent the diffraction limit. Beyond imaging, AMO physics contributes with optical traps that probe the mechanical and dynamical properties of single ‘live’ cells, highlighting differences between healthy and diseased cells. Trap methodologies have also begun to probe the dynamics governing of neural stem cells adhering to each other to form neurospheres and, with squeezed light to probe sub-diffusive motion of yeast cells. Strong field science contributes not only by providing a source of energetic electrons and γ-rays via laser-plasma accelerations schemes, but also via filamentation and supercontinuum generation, enabling mainstream collision physics into play in diverse processes like DNA damage induced by low-energy collisions to

Perspective: Reaches of chemical physics in biology

Science.gov (United States)

Gruebele, Martin; Thirumalai, D.

2013-01-01

Chemical physics as a discipline contributes many experimental tools, algorithms, and fundamental theoretical models that can be applied to biological problems. This is especially true now as the molecular level and the systems level descriptions begin to connect, and multi-scale approaches are being developed to solve cutting edge problems in biology. In some cases, the concepts and tools got their start in non-biological fields, and migrated over, such as the idea of glassy landscapes, fluorescence spectroscopy, or master equation approaches. In other cases, the tools were specifically developed with biological physics applications in mind, such as modeling of single molecule trajectories or super-resolution laser techniques. In this introduction to the special topic section on chemical physics of biological systems, we consider a wide range of contributions, all the way from the molecular level, to molecular assemblies, chemical physics of the cell, and finally systems-level approaches, based on the contributions to this special issue. Chemical physicists can look forward to an exciting future where computational tools, analytical models, and new instrumentation will push the boundaries of biological inquiry. PMID:24089712

Perspective: Reaches of chemical physics in biology.

Science.gov (United States)

Gruebele, Martin; Thirumalai, D

2013-09-28

Chemical physics as a discipline contributes many experimental tools, algorithms, and fundamental theoretical models that can be applied to biological problems. This is especially true now as the molecular level and the systems level descriptions begin to connect, and multi-scale approaches are being developed to solve cutting edge problems in biology. In some cases, the concepts and tools got their start in non-biological fields, and migrated over, such as the idea of glassy landscapes, fluorescence spectroscopy, or master equation approaches. In other cases, the tools were specifically developed with biological physics applications in mind, such as modeling of single molecule trajectories or super-resolution laser techniques. In this introduction to the special topic section on chemical physics of biological systems, we consider a wide range of contributions, all the way from the molecular level, to molecular assemblies, chemical physics of the cell, and finally systems-level approaches, based on the contributions to this special issue. Chemical physicists can look forward to an exciting future where computational tools, analytical models, and new instrumentation will push the boundaries of biological inquiry.

Dynamic oceanography determines fine scale foraging behavior of Masked Boobies in the Gulf of Mexico.

Directory of Open Access Journals (Sweden)

Caroline L Poli

Full Text Available During breeding, foraging marine birds are under biological, geographic, and temporal constraints. These contraints require foraging birds to efficiently process environmental cues derived from physical habitat features that occur at nested spatial scales. Mesoscale oceanography in particular may change rapidly within and between breeding seasons, and findings from well-studied systems that relate oceanography to seabird foraging may transfer poorly to regions with substantially different oceanographic conditions. Our objective was to examine foraging behavior of a pan-tropical seabird, the Masked Booby (Sula dactylatra, in the understudied Caribbean province, a moderately productive region driven by highly dynamic currents and fronts. We tracked 135 individuals with GPS units during May 2013, November 2013, and December 2014 at a regionally important breeding colony in the southern Gulf of Mexico. We measured foraging behavior using characteristics of foraging trips and used area restricted search as a proxy for foraging events. Among individual attributes, nest stage contributed to differences in foraging behavior whereas sex did not. Birds searched for prey at nested hierarchical scales ranging from 200 m-35 km. Large-scale coastal and shelf-slope fronts shifted position between sampling periods and overlapped geographically with overall foraging locations. At small scales (at the prey patch level, the specific relationship between environmental variables and foraging behavior was highly variable among individuals but general patterns emerged. Sea surface height anomaly and velocity of water were the strongest predictors of area restricted search behavior in random forest models, a finding that is consistent with the characterization of the Gulf of Mexico as an energetic system strongly influenced by currents and eddies. Our data may be combined with tracking efforts in the Caribbean province and across tropical regions to advance

Dynamic oceanography determines fine scale foraging behavior of Masked Boobies in the Gulf of Mexico

Science.gov (United States)

Poli, Caroline L.; Harrison, Autumn-Lynn; Vallarino, Adriana; Gerard, Patrick D.; Jodice, Patrick G.R.

2017-01-01

During breeding, foraging marine birds are under biological, geographic, and temporal constraints. These contraints require foraging birds to efficiently process environmental cues derived from physical habitat features that occur at nested spatial scales. Mesoscale oceanography in particular may change rapidly within and between breeding seasons, and findings from well-studied systems that relate oceanography to seabird foraging may transfer poorly to regions with substantially different oceanographic conditions. Our objective was to examine foraging behavior of a pan-tropical seabird, the Masked Booby (Sula dactylatra), in the understudied Caribbean province, a moderately productive region driven by highly dynamic currents and fronts. We tracked 135 individuals with GPS units during May 2013, November 2013, and December 2014 at a regionally important breeding colony in the southern Gulf of Mexico. We measured foraging behavior using characteristics of foraging trips and used area restricted search as a proxy for foraging events. Among individual attributes, nest stage contributed to differences in foraging behavior whereas sex did not. Birds searched for prey at nested hierarchical scales ranging from 200 m—35 km. Large-scale coastal and shelf-slope fronts shifted position between sampling periods and overlapped geographically with overall foraging locations. At small scales (at the prey patch level), the specific relationship between environmental variables and foraging behavior was highly variable among individuals but general patterns emerged. Sea surface height anomaly and velocity of water were the strongest predictors of area restricted search behavior in random forest models, a finding that is consistent with the characterization of the Gulf of Mexico as an energetic system strongly influenced by currents and eddies. Our data may be combined with tracking efforts in the Caribbean province and across tropical regions to advance understanding of seabird

Quantum physics meets biology.

Science.gov (United States)

Arndt, Markus; Juffmann, Thomas; Vedral, Vlatko

2009-12-01

Quantum physics and biology have long been regarded as unrelated disciplines, describing nature at the inanimate microlevel on the one hand and living species on the other hand. Over the past decades the life sciences have succeeded in providing ever more and refined explanations of macroscopic phenomena that were based on an improved understanding of molecular structures and mechanisms. Simultaneously, quantum physics, originally rooted in a world-view of quantum coherences, entanglement, and other nonclassical effects, has been heading toward systems of increasing complexity. The present perspective article shall serve as a "pedestrian guide" to the growing interconnections between the two fields. We recapitulate the generic and sometimes unintuitive characteristics of quantum physics and point to a number of applications in the life sciences. We discuss our criteria for a future "quantum biology," its current status, recent experimental progress, and also the restrictions that nature imposes on bold extrapolations of quantum theory to macroscopic phenomena.

Physical properties of biological entities: an introduction to the ontology of physics for biology.

Directory of Open Access Journals (Sweden)

Daniel L Cook

Full Text Available As biomedical investigators strive to integrate data and analyses across spatiotemporal scales and biomedical domains, they have recognized the benefits of formalizing languages and terminologies via computational ontologies. Although ontologies for biological entities-molecules, cells, organs-are well-established, there are no principled ontologies of physical properties-energies, volumes, flow rates-of those entities. In this paper, we introduce the Ontology of Physics for Biology (OPB, a reference ontology of classical physics designed for annotating biophysical content of growing repositories of biomedical datasets and analytical models. The OPB's semantic framework, traceable to James Clerk Maxwell, encompasses modern theories of system dynamics and thermodynamics, and is implemented as a computational ontology that references available upper ontologies. In this paper we focus on the OPB classes that are designed for annotating physical properties encoded in biomedical datasets and computational models, and we discuss how the OPB framework will facilitate biomedical knowledge integration.

Physical properties of biological entities: an introduction to the ontology of physics for biology.

Science.gov (United States)

Cook, Daniel L; Bookstein, Fred L; Gennari, John H

2011-01-01

As biomedical investigators strive to integrate data and analyses across spatiotemporal scales and biomedical domains, they have recognized the benefits of formalizing languages and terminologies via computational ontologies. Although ontologies for biological entities-molecules, cells, organs-are well-established, there are no principled ontologies of physical properties-energies, volumes, flow rates-of those entities. In this paper, we introduce the Ontology of Physics for Biology (OPB), a reference ontology of classical physics designed for annotating biophysical content of growing repositories of biomedical datasets and analytical models. The OPB's semantic framework, traceable to James Clerk Maxwell, encompasses modern theories of system dynamics and thermodynamics, and is implemented as a computational ontology that references available upper ontologies. In this paper we focus on the OPB classes that are designed for annotating physical properties encoded in biomedical datasets and computational models, and we discuss how the OPB framework will facilitate biomedical knowledge integration. © 2011 Cook et al.

Intermediate physics for medicine and biology

CERN Document Server

Hobbie, Russell K

2015-01-01

This classic text has been used in over 20 countries by advanced undergraduate and beginning graduate students in biophysics, physiology, medical physics, neuroscience, and biomedical engineering. It bridges the gap between an introductory physics course and the application of physics to the life and biomedical sciences. Extensively revised and updated, the fifth edition incorporates new developments at the interface between physics and biomedicine. New coverage includes cyclotrons, photodynamic therapy, color vision, x-ray crystallography, the electron microscope, cochlear implants, deep brain stimulation, nanomedicine, and other topics highlighted in the National Research Council report BIO2010. As with the previous edition, the first half of the text is primarily biological physics, emphasizing the use of ideas from physics to understand biology and physiology, and the second half is primarily medical physics, describing the use of physics in medicine for diagnosis (mainly imaging) and therapy. Among the m...

History of oceanography of the Indian Ocean

Digital Repository Service at National Institute of Oceanography (India)

Sengupta, R.

This paper highlights history of the oceanography of the Indian Ocean. Oceanographic activities during Ancient period, Medieval period, British period, Post-Independence period are briefly discussed. The role of the IIOE, IOC, UNESCO are also...

Link between physics and biology

International Nuclear Information System (INIS)

Zaider, M.; Brenner, D.J.; Hall, E.J.; Kliauga, P.

1988-01-01

In the general causative chain: radiation physics-radiation chemistry - radiobiology - cancer treatment, physics, the initiating and therefore cardinal agent, continues to play the role of the poor relation. The main reason for this state of affairs rests with the fact that most models of radiation action - the actual link between physics and biology - make very little or no use of information concerning the radiation field: they are simply convenient vehicles for describing a large body of radiobiological data with analytical expressions containing a minimum number of parameters. In spite of their practical usefulness such models will not be further considered here. It is a reasonable assertion that the main goal of radiation biophysics is to elucidate the mechanisms of radiation action on biological entities

Biology-inspired AMO physics

International Nuclear Information System (INIS)

Mathur, Deepak

2015-01-01

This Topical Review presents an overview of increasingly robust interconnects that are being established between atomic, molecular and optical (AMO) physics and the life sciences. AMO physics, outgrowing its historical role as a facilitator—a provider of optical methodologies, for instance—now seeks to partner biology in its quest to link systems-level descriptions of biological entities to insights based on molecular processes. Of course, perspectives differ when AMO physicists and biologists consider various processes. For instance, while AMO physicists link molecular properties and dynamics to potential energy surfaces, these have to give way to energy landscapes in considerations of protein dynamics. But there are similarities also: tunnelling and non-adiabatic transitions occur both in protein dynamics and in molecular dynamics. We bring to the fore some such differences and similarities; we consider imaging techniques based on AMO concepts, like 4D fluorescence microscopy which allows access to the dynamics of cellular processes, multiphoton microscopy which offers a built-in confocality, and microscopy with femtosecond laser beams to saturate the suppression of fluorescence in spatially controlled fashion so as to circumvent the diffraction limit. Beyond imaging, AMO physics contributes with optical traps that probe the mechanical and dynamical properties of single ‘live’ cells, highlighting differences between healthy and diseased cells. Trap methodologies have also begun to probe the dynamics governing of neural stem cells adhering to each other to form neurospheres and, with squeezed light to probe sub-diffusive motion of yeast cells. Strong field science contributes not only by providing a source of energetic electrons and γ-rays via laser-plasma accelerations schemes, but also via filamentation and supercontinuum generation, enabling mainstream collision physics into play in diverse processes like DNA damage induced by low-energy collisions to

Physics and Biology Collaborate to Color the World

Science.gov (United States)

Liu, Dennis W. C.

2013-01-01

To understand how life works, it is essential to understand physics and chemistry. Most biologists have a clear notion of where chemistry fits into their life sciences research and teaching. Although we are physical beings, physics does not always find a place in the biology curriculum. Physics informs and enlightens biology in myriad dimensions,…

Toward University Modeling Instruction—Biology: Adapting Curricular Frameworks from Physics to Biology

Science.gov (United States)

Manthey, Seth; Brewe, Eric

2013-01-01

University Modeling Instruction (UMI) is an approach to curriculum and pedagogy that focuses instruction on engaging students in building, validating, and deploying scientific models. Modeling Instruction has been successfully implemented in both high school and university physics courses. Studies within the physics education research (PER) community have identified UMI's positive impacts on learning gains, equity, attitudinal shifts, and self-efficacy. While the success of this pedagogical approach has been recognized within the physics community, the use of models and modeling practices is still being developed for biology. Drawing from the existing research on UMI in physics, we describe the theoretical foundations of UMI and how UMI can be adapted to include an emphasis on models and modeling for undergraduate introductory biology courses. In particular, we discuss our ongoing work to develop a framework for the first semester of a two-semester introductory biology course sequence by identifying the essential basic models for an introductory biology course sequence. PMID:23737628

Toward university modeling instruction--biology: adapting curricular frameworks from physics to biology.

Science.gov (United States)

Manthey, Seth; Brewe, Eric

2013-06-01

University Modeling Instruction (UMI) is an approach to curriculum and pedagogy that focuses instruction on engaging students in building, validating, and deploying scientific models. Modeling Instruction has been successfully implemented in both high school and university physics courses. Studies within the physics education research (PER) community have identified UMI's positive impacts on learning gains, equity, attitudinal shifts, and self-efficacy. While the success of this pedagogical approach has been recognized within the physics community, the use of models and modeling practices is still being developed for biology. Drawing from the existing research on UMI in physics, we describe the theoretical foundations of UMI and how UMI can be adapted to include an emphasis on models and modeling for undergraduate introductory biology courses. In particular, we discuss our ongoing work to develop a framework for the first semester of a two-semester introductory biology course sequence by identifying the essential basic models for an introductory biology course sequence.

Utilizing social media for informal ocean conservation and education: The BioOceanography Project

Science.gov (United States)

Payette, J.

2016-02-01

Science communication through the use of social media is a rapidly evolving and growing pursuit in academic and scientific circles. Online tools and social media are being used in not only scientific communication but also scientific publication, education, and outreach. Standards and usage of social media as well as other online tools for communication, networking, outreach, and publication are always in development. Caution and a conservative attitude towards these novel "Science 2.0" tools is understandable because of their rapidly changing nature and the lack of professional standards for using them. However there are some key benefits and unique ways social media, online systems, and other Open or Open Source technologies, software, and "Science 2.0" tools can be utilized for academic purposes such as education and outreach. Diverse efforts for ocean conservation and education will continue to utilize social media for a variety of purposes. The BioOceanography project is an informal communication, education, outreach, and conservation initiative created for enhancing knowledge related to Oceanography and Marine Science with an unbiased yet conservation-minded approach and in an Open Source format. The BioOceanography project is ongoing and still evolving, but has already contributed to ocean education and conservation communication in key ways through a concerted web presence since 2013, including a curated Twitter account @_Oceanography and BioOceanography blog style website. Social media tools like those used in this project, if used properly can be highly effective and valuable for encouraging students, networking with researchers, and educating the general public in Oceanography.

Intermediate Physics for Medicine and Biology

CERN Document Server

Hobbie, Russell K

2007-01-01

Intended for advanced undergraduate and beginning graduate students in biophysics, physiology, medical physics, cell biology, and biomedical engineering, this wide-ranging text bridges the gap between introductory physics and its application to the life and biomedical sciences. This extensively revised and updated fourth edition reflects new developments at the burgeoning interface between physics and biomedicine. Among the many topics treated are: forces in the skeletal system; fluid flow, with examples from the circulatory system; the logistic equation; scaling; transport of neutral particles by diffusion and by solvent drag; membranes and osmosis; equipartition of energy in statistical mechanics; the chemical potential and free energy; biological magnetic fields; membranes and gated channels in membranes; linear and nonlinear feedback systems; nonlinear phenomena, including biological clocks and chaotic behavior; signal analysis, noise and stochastic resonance detection of weak signals; image formation and...

IEOOS: the Spanish Institute of Oceanography Observing System

Science.gov (United States)

Tel, E.; Balbin, R.; Cabanas, J. M.; Garcia, M. J.; Garcia-Martinez, M. C.; Gonzalez-Pola, C.; Lavin, A.; Lopez-Jurado, J. L.; Rodriguez, C.; Ruiz-Villarreal, M.; Sanchez-Leal, R. F.; Vargas-Yanez, M.; Velez-Belchi, P.

2015-10-01

Since its foundation, 100 years ago, the Spanish Institute of Oceanography (IEO) has been observing and measuring the ocean characteristics. Here is a summary of the initiatives of the IEO in the field of the operational oceanography (OO). Some systems like the tide gauges network has been working for more than 70 years. The IEO standard sections began at different moments depending on the local projects, and nowadays there are more than 180 coastal stations and deep-sea ones that are systematically sampled, obtaining physical and biochemical measurements. At this moment, the IEO Observing System (IEOOS) includes 6 permanent moorings equipped with currentmeters, an open-sea ocean-meteorological buoy offshore Santander and an SST satellital image reception station. It also supports the Spanish contribution to the ARGO international program with 47 deployed profilers, and continuous monitoring thermosalinometers, meteorological stations and ADCP onboard the IEO research vessels. The system is completed with the IEO contribution to the RAIA and Gibraltar observatories, and the development of regional prediction models. All these systematic measurements allow the IEO to give responses to ocean research activities, official agencies requirements and industrial and main society demands as navigation, resource management, risks management, recreation, etc, as well as for management development pollution-related economic activities or marine ecosystems. All these networks are linked to international initiatives, framed largely in supranational programs Earth observation sponsored by the United Nations or the European Union. The synchronic observation system permits following spatio-temporal description of some events, as new deep water formation in the Mediterranean Sea and the injection of heat to intermediate waters in the Bay of Biscay after some colder northern storms in winter 2005.

Diploma of Higher Studies in Oceanography. Red Sea & Gulf of Aden Programme (PERSGA).

Science.gov (United States)

Arab Organization for Education and Science, Cairo (Egypt).

This document presents four courses for the diploma of higher studies in oceanography conducted by the Department of Oceanography, Faculty of Science, University of Alexandria, Egypt. These courses are organized by the Arab League Educational, Cultural and Scientific Organization (ALECSO). Each course is designed to be taught in one academic year…

Physical models of biological information and adaptation.

Science.gov (United States)

Stuart, C I

1985-04-07

The bio-informational equivalence asserts that biological processes reduce to processes of information transfer. In this paper, that equivalence is treated as a metaphor with deeply anthropomorphic content of a sort that resists constitutive-analytical definition, including formulation within mathematical theories of information. It is argued that continuance of the metaphor, as a quasi-theoretical perspective in biology, must entail a methodological dislocation between biological and physical science. It is proposed that a general class of functions, drawn from classical physics, can serve to eliminate the anthropomorphism. Further considerations indicate that the concept of biological adaptation is central to the general applicability of the informational idea in biology; a non-anthropomorphic treatment of adaptive phenomena is suggested in terms of variational principles.

Physics and biology of protein

International Nuclear Information System (INIS)

Go, Nobuhiro

2008-01-01

This is a record of my lecture given at the occasion of Yukawa-Tomonaga Centennial Symposium. At first I will mention very briefly how Yukawa contributed to the development of biophysics in Japan. Then I will be concerned with the relationship between physics and biology by discussing various aspects of protein. How far and in what sense can physics approach the essence of protein? In what aspects are something beyond physics important? (author)

When physics is not "just physics": complexity science invites new measurement frames for exploring the physics of cognitive and biological development.

Science.gov (United States)

Kelty-Stephen, Damian; Dixon, James A

2012-01-01

The neurobiological sciences have struggled to resolve the physical foundations for biological and cognitive phenomena with a suspicion that biological and cognitive systems, capable of exhibiting and contributing to structure within themselves and through their contexts, are fundamentally distinct or autonomous from purely physical systems. Complexity science offers new physics-based approaches to explaining biological and cognitive phenomena. In response to controversy over whether complexity science might seek to "explain away" biology and cognition as "just physics," we propose that complexity science serves as an application of recent advances in physics to phenomena in biology and cognition without reducing or undermining the integrity of the phenomena to be explained. We highlight that physics is, like the neurobiological sciences, an evolving field and that the threat of reduction is overstated. We propose that distinctions between biological and cognitive systems from physical systems are pretheoretical and thus optional. We review our own work applying insights from post-classical physics regarding turbulence and fractal fluctuations to the problems of developing cognitive structure. Far from hoping to reduce biology and cognition to "nothing but" physics, we present our view that complexity science offers new explanatory frameworks for considering physical foundations of biological and cognitive phenomena.

Secretary of the Navy Professor of Oceanography

Science.gov (United States)

2013-11-18

of Oceanography, La Jolla, CA; 5-10 June 2011 Attended: Algae + Fish = Ocean Mixing? Conference, La Jolla, CA; 5-6 July 2011 Attended: JASON Summer...the scientific work of Klaus Hasselmann at the Max Planck Institute for Meteorology; Hamburg , Germany; 09 November 2011 Keynote Address: Nansen

Biological physics in México: Review and new challenges.

Science.gov (United States)

Hernández-Lemus, Enrique

2011-03-01

Biological and physical sciences possess a long-standing tradition of cooperativity as separate but related subfields of science. For some time, this cooperativity has been limited by their obvious differences in methods and views. Biological physics has recently experienced a kind of revival (or better a rebirth) due to the growth of molecular research on animate matter. New avenues for research have been opened for both theoretical and experimental physicists. Nevertheless, in order to better travel for such paths, the contemporary biological physicist should be armed with a set of specialized tools and methods but also with a new attitude toward multidisciplinarity. In this review article, we intend to somehow summarize what has been done in the past (in particular, as an example we will take a closer look at the Mexican case), to show some examples of fruitful investigations in the biological physics area and also to set a proposal of new curricula for physics students and professionals interested in applying their science to get a better understanding of the physical basis of biological function.

Optimizing Introductory Physics for the Life Sciences: Placing Physics in Biological Context

Science.gov (United States)

Crouch, Catherine

2014-03-01

Physics is a critical foundation for today's life sciences and medicine. However, the physics content and ways of thinking identified by life scientists as most important for their fields are often not taught, or underemphasized, in traditional introductory physics courses. Furthermore, such courses rarely give students practice using physics to understand living systems in a substantial way. Consequently, students are unlikely to recognize the value of physics to their chosen fields, or to develop facility in applying physics to biological systems. At Swarthmore, as at several other institutions engaged in reforming this course, we have reorganized the introductory course for life science students around touchstone biological examples, in which fundamental physics contributes significantly to understanding biological phenomena or research techniques, in order to make explicit the value of physics to the life sciences. We have also focused on the physics topics and approaches most relevant to biology while seeking to develop rigorous qualitative reasoning and quantitative problem solving skills, using established pedagogical best practices. Each unit is motivated by and culminates with students analyzing one or more touchstone examples. For example, in the second semester we emphasize electric potential and potential difference more than electric field, and start from students' typically superficial understanding of the cell membrane potential and of electrical interactions in biochemistry to help them develop a more sophisticated understanding of electric forces, field, and potential, including in the salt water environment of life. Other second semester touchstones include optics of vision and microscopes, circuit models for neural signaling, and magnetotactic bacteria. When possible, we have adapted existing research-based curricular materials to support these examples. This talk will describe the design and development process for this course, give examples of

Biology meets Physics: Reductionism and Multi-scale Modeling of Morphogenesis

DEFF Research Database (Denmark)

Green, Sara; Batterman, Robert

2017-01-01

A common reductionist assumption is that macro-scale behaviors can be described "bottom-up" if only sufficient details about lower-scale processes are available. The view that an "ideal" or "fundamental" physics would be sufficient to explain all macro-scale phenomena has been met with criticism ...... modeling in developmental biology. In such contexts, the relation between models at different scales and from different disciplines is neither reductive nor completely autonomous, but interdependent....... from philosophers of biology. Specifically, scholars have pointed to the impossibility of deducing biological explanations from physical ones, and to the irreducible nature of distinctively biological processes such as gene regulation and evolution. This paper takes a step back in asking whether bottom......-up modeling is feasible even when modeling simple physical systems across scales. By comparing examples of multi-scale modeling in physics and biology, we argue that the “tyranny of scales” problem present a challenge to reductive explanations in both physics and biology. The problem refers to the scale...

Pragmatic information in biology and physics.

Science.gov (United States)

Roederer, Juan G

2016-03-13

I will show how an objective definition of the concept of information and the consideration of recent results about information processing in the human brain help clarify some fundamental aspects of physics and biology. Rather than attempting to define information ab initio, I introduce the concept of interaction between material bodies as a primary concept. Two distinct categories can be identified: (i) interactions which can always be reduced to a superposition of physical interactions (forces) between elementary constituents; and (ii) interactions between complex bodies which cannot be expressed as a superposition of interactions between parts, and in which patterns and forms (in space and/or time) play the determining role. Pragmatic information is then defined as the link between a given pattern and the ensuing pattern-specific change. I will show that pragmatic information is a biological concept; it plays no active role in the purely physical domain-it only does so when a living organism intervenes. The consequences for physics (including foundations of quantum mechanics) and biology (including brain function) will be discussed. This will include speculations about three fundamental transitions, from the quantum to the classical domain, from natural inanimate to living systems, and from subhuman to human brain information-processing operations, introduced here in their direct connection with the concept of pragmatic information. © 2016 The Author(s).

Physical Biology : challenges for our second decade

Science.gov (United States)

Levine, Herbert

2014-06-01

It is quite an honor to be asked to become the third editor-in-chief of Physical Biology . I am following in the footsteps of Tim Newman, who served with energy and enthusiasm. Hopefully, the entire community fully appreciates his contributions to moving the field forward. Thank you, Tim! With the honor, however, goes a clear responsibility. Our journal has survived its birth pangs and emerged as a serious venue for publishing quality research papers using physical science to address the workings of living matter. With the support of scientists in this field and with the ongoing commitment of the IOP, we have successfully reached adolescence. Yet, there is clearly much room to grow and there are clear challenges in defining and maintaining our special niche in the publishing landscape. In this still-developing state, the journal very much mimics the state of the field of physical biology itself. Few scientists continue to question the relevance of physical science for the investigation of the living world. But, will our new perspective and the methods that come with it really lead to radically new principles of how life works? Or, will breakthroughs continue to come from experimental biology (perhaps aided by the traditional physicist-as-tool-builder paradigm), leaving us to put quantitative touches on established fundamentals? In thinking about these questions for the field and for the journal, I have tried to understand what is really unique about our joint endeavors. I have become convinced that living matter represents a new challenge to our physical-science based conceptual framework. Not only is it far from equilibrium, as has been generally recognized, but it violates our simple notions of the separability of constituents, their interactions and the resulting large-scale behavior. Unlike, say, atomic physicists who can do productive research while safely ignoring the latest developments in QCD (let alone particle physics at higher energies), we do not yet

NODC Standard Product: Climatic atlas of the Arctic Seas 2004 - Database of the Barents, Kara, Laptev, and White Seas - Oceanography and marine biology (NODC Accession 0098061)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This Atlas presents primary data on meteorology, oceanography, and hydrobiology from the Barents, Kara, Laptev, and White Seas, which were collected during the...

Biological processes in the water column of the South Atlantic bight

Energy Technology Data Exchange (ETDEWEB)

Paffenhoefer, G.A.; Yoder, J.A.

1980-01-31

Progress is reported on research conducted during 1979 on the biological oceanography of the South Atlantic Bight. The presentation consists of a number of published articles and abstracts of oral presentations. (ACR)

PREFACE: Nanobiology: from physics and engineering to biology

Science.gov (United States)

Nussinov, Ruth; Alemán, Carlos

2006-03-01

Biological systems are inherently nano in scale. Unlike nanotechnology, nanobiology is characterized by the interplay between physics, materials science, synthetic organic chemistry, engineering and biology. Nanobiology is a new discipline, with the potential of revolutionizing medicine: it combines the tools, ideas and materials of nanoscience and biology; it addresses biological problems that can be studied and solved by nanotechnology; it devises ways to construct molecular devices using biomacromolecules; and it attempts to build molecular machines utilizing concepts seen in nature. Its ultimate aim is to be able to predictably manipulate these, tailoring them to specified needs. Nanobiology targets biological systems and uses biomacromolecules. Hence, on the one hand, nanobiology is seemingly constrained in its scope as compared to general nanotechnology. Yet the amazing intricacy of biological systems, their complexity, and the richness of the shapes and properties provided by the biological polymers, enrich nanobiology. Targeting biological systems entails comprehension of how they work and the ability to use their components in design. From the physical standpoint, ultimately, if we are to understand biology we need to learn how to apply physical principles to figure out how these systems actually work. The goal of nanobiology is to assist in probing these systems at the appropriate length scale, heralding a new era in the biological, physical and chemical sciences. Biology is increasingly asking quantitative questions. Quantitation is essential if we are to understand how the cell works, and the details of its regulation. The physical sciences provide tools and strategies to obtain accurate measurements and simulate the information to allow comprehension of the processes. Nanobiology is at the interface of the physical and the biological sciences. Biology offers to the physical sciences fascinating problems, sophisticated systems and a rich repertoire of

Subseabed Disposal Project annual report, FY85 to termination of project: Physical Oceanography and Water Column Geochemistry Studies, October 1984 through May 1986

Energy Technology Data Exchange (ETDEWEB)

Kupferman, S.L. (ed.)

1987-05-01

This report covers the work of the Physical Oceanography and Water Column Geochemistry (POWCG) Studies Group of the Subseabed Disposal Project (SDP) from October 1984 to termination of the project in May 1986. The overview of the work includes an introduction, general descriptions of the activities, and a summary. Detailed discussions are included as appendices. During the period of this report the POWCG Studies Group held a meeting to develop a long-term research plan for the Nares Abyssal Plain, which was recently designated as a study area for the Environmental Study Group of the SDP. The POWCG Studies Group has also planned and participated in two interdisciplinary oceanographic missions to the Nares which have resulted in the acquisition of data and samples which can be used to begin to understand the workings of the ecosystem at the site, and for developing a preliminary site assessment. The papers in the appendices have been processed for inclusion in the Energy Data Base.

Subseabed Disposal Project annual report, FY85 to termination of project: Physical Oceanography and Water Column Geochemistry Studies, October 1984 through May 1986

International Nuclear Information System (INIS)

Kupferman, S.L.

1987-05-01

This report covers the work of the Physical Oceanography and Water Column Geochemistry (POWCG) Studies Group of the Subseabed Disposal Project (SDP) from October 1984 to termination of the project in May 1986. The overview of the work includes an introduction, general descriptions of the activities, and a summary. Detailed discussions are included as appendices. During the period of this report the POWCG Studies Group held a meeting to develop a long-term research plan for the Nares Abyssal Plain, which was recently designated as a study area for the Environmental Study Group of the SDP. The POWCG Studies Group has also planned and participated in two interdisciplinary oceanographic missions to the Nares which have resulted in the acquisition of data and samples which can be used to begin to understand the workings of the ecosystem at the site, and for developing a preliminary site assessment. The papers in the appendices have been processed for inclusion in the Energy Data Base

The Physics of Marine Biology.

Science.gov (United States)

Conn, Kathleen

1992-01-01

Discusses ways in which marine biology can be integrated into the physics classroom. Topics suggested for incorporation include the harmonic motion of ocean waves, ocean currents, the interaction of visible light with ocean water, pressure, light absorption, and sound transfer in water. (MDH)

Introductory physics in biological context: An approach to improve introductory physics for life science students

Science.gov (United States)

Crouch, Catherine H.; Heller, Kenneth

2014-05-01

We describe restructuring the introductory physics for life science students (IPLS) course to better support these students in using physics to understand their chosen fields. Our courses teach physics using biologically rich contexts. Specifically, we use examples in which fundamental physics contributes significantly to understanding a biological system to make explicit the value of physics to the life sciences. This requires selecting the course content to reflect the topics most relevant to biology while maintaining the fundamental disciplinary structure of physics. In addition to stressing the importance of the fundamental principles of physics, an important goal is developing students' quantitative and problem solving skills. Our guiding pedagogical framework is the cognitive apprenticeship model, in which learning occurs most effectively when students can articulate why what they are learning matters to them. In this article, we describe our courses, summarize initial assessment data, and identify needs for future research.

Naval Meteorology and Oceanography Command exhibit

Science.gov (United States)

2000-01-01

Designed to entertain while educating, StenniSphere at the John C. Stennis Space Center in Hancock County, Miss., includes informative displays and exhibits from NASA and other agencies located at Stennis, such as this one from the Naval Meteorology and Oceanography Command. Visitors can 'travel' three-dimensionally under the sea and check on the weather back home in the Weather Center. StenniSphere is open free of charge from 9 a.m. to 5 p.m. daily.

Scripps Institution of Oceanography Ferromanganese Nodule Analysis File - IDOE Portion

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Scripps Institution of Oceanography (SIO) compiled data on the geochemistry of marine ferromanganese nodules, funded by the U.S. National Science Foundation...

Physical mechanisms of biological molecular motors

International Nuclear Information System (INIS)

Miller, John H. Jr.; Vajrala, Vijayanand; Infante, Hans L.; Claycomb, James R.; Palanisami, Akilan; Fang Jie; Mercier, George T.

2009-01-01

Biological motors generally fall into two categories: (1) those that convert chemical into mechanical energy via hydrolysis of a nucleoside triphosphate, usually adenosine triphosphate, regarded as life's chemical currency of energy and (2) membrane bound motors driven directly by an ion gradient and/or membrane potential. Here we argue that electrostatic interactions play a vital role for both types of motors and, therefore, the tools of physics can greatly contribute to understanding biological motors

SWOT Oceanography and Hydrology Data Product Simulators

Science.gov (United States)

Peral, Eva; Rodriguez, Ernesto; Fernandez, Daniel Esteban; Johnson, Michael P.; Blumstein, Denis

2013-01-01

The proposed Surface Water and Ocean Topography (SWOT) mission would demonstrate a new measurement technique using radar interferometry to obtain wide-swath measurements of water elevation at high resolution over ocean and land, addressing the needs of both the hydrology and oceanography science communities. To accurately evaluate the performance of the proposed SWOT mission, we have developed several data product simulators at different levels of fidelity and complexity.

Physical mechanisms of biological molecular motors

Energy Technology Data Exchange (ETDEWEB)

Miller, John H. Jr. [Department of Physics and Texas Center for Superconductivity, University of Houston, 4800 Calhoun Road, Ste. 617 SR1 Houston, TX 77204-5005 (United States)], E-mail: jhmiller@uh.edu; Vajrala, Vijayanand; Infante, Hans L. [Department of Physics and Texas Center for Superconductivity, University of Houston, 4800 Calhoun Road, Ste. 617 SR1 Houston, TX 77204-5005 (United States); Claycomb, James R. [Department of Physics and Texas Center for Superconductivity, University of Houston, 4800 Calhoun Road, Ste. 617 SR1 Houston, TX 77204-5005 (United States); Department of Mathematics and Physics, Houston Baptist University, 7502 Fondren Road, Houston, TX 77074-3298 (United States); Palanisami, Akilan; Fang Jie; Mercier, George T. [Department of Physics and Texas Center for Superconductivity, University of Houston, 4800 Calhoun Road, Ste. 617 SR1 Houston, TX 77204-5005 (United States)

2009-03-01

Biological motors generally fall into two categories: (1) those that convert chemical into mechanical energy via hydrolysis of a nucleoside triphosphate, usually adenosine triphosphate, regarded as life's chemical currency of energy and (2) membrane bound motors driven directly by an ion gradient and/or membrane potential. Here we argue that electrostatic interactions play a vital role for both types of motors and, therefore, the tools of physics can greatly contribute to understanding biological motors.

Fisheries Oceanography in the Virgin Islands: Preliminary Results from a Collaborative Research Endeavor

Science.gov (United States)

Smith, R. H.; Gerard, T. L.; Johns, E. M.; Lamkin, J. T.

2008-05-01

A multi-species spawning aggregation located on the banks south of St. Thomas includes several economically important fish species, including dog snapper, yellowfin grouper, Nassau grouper, and tiger grouper. Increased fishing pressure on these banks has prompted the Caribbean Fisheries Council to take actions such as seasonally closing fishing grounds and establishing Marine Protected Areas (MPAs). Due to a lack of biological and oceanographic data for the region, these management decisions have been based on professional judgment rather than scientific data. In response to this situation, NOAA scientists from SEFSC and AOML began an interdisciplinary field study in the region in 2007. Research cruises utilize biological sampling techniques such as MOCNESS, neuston, and bongo trawl tows simultaneously with standard physical sampling methods such as CTD/LADCP casts, hull- mounted water velocity measurements, and Lagrangian drifter deployments. The three year project aims to determine how the unprotected banks of the Virgin Islands and surrounding region, the seasonally closed banks and MPAs, and near-shore areas are ecologically linked in terms of larval dispersal, transport, and life history patterns. This collaboration should produce an assessment, based on scientific data, of the effectiveness of Caribbean Research Council management decisions and suggest modifications and improvements to current policy. Additionally, this project will also provide fisheries independent data, and develop ecological indices which can be integrated into stock assessment models. Analysis of data gathered during the project's first research cruise is yielding preliminary results. A total of 26,809 fish larvae were collected from the Grammanik and Red Hind Banks and surrounding regions. Of this total, 585 Serranidae (grouper) and 93 Lutjanidae (snapper) larval specimens were collected. Typical sampling transects included near-shore, shelf-break, and offshore regimes. The most

Physical activity and biological maturation: a systematic review

Directory of Open Access Journals (Sweden)

Eliane Denise Araújo Bacil

2015-03-01

Full Text Available OBJECTIVE: To analyze the association between physical activity (PA and biological maturation in children and adolescents. DATA SOURCE: We performed a systematic review in April 2013 in the electronic databases of PubMed/MEDLINE, SportDiscus, Web of Science and LILACS without time restrictions. A total of 628 potentially relevant articles were identified and 10 met the inclusion criteria for this review: cross-sectional or longitudinal studies, published in Portuguese, English or Spanish, with schoolchildren aged 9-15 years old of both genders. DATA SYNTHESIS: Despite the heterogeneity of the studies, there was an inverse association between PA and biological maturation. PA decreases with increased biological and chronological age in both genders. Boys tend to be more physically active than girls; however, when controlling for biological age, the gender differences disappear. The association between PA and timing of maturation varies between the genders. Variation in the timing of biological maturation affects the tracking of PA in early adolescent girls. This review suggests that mediators (BMI, depression, low self-esteem, and concerns about body weight can explain the association between PA and biological maturation. CONCLUSIONS: There is an association between PA and biological maturation. PA decreases with increasing biological age with no differences between genders. As for the timing of biological maturation, this association varies between genders.

Physics with illustrative examples from medicine and biology

CERN Document Server

Benedek, George B

Physics: with illustrative examples from medicine and biology is a three-volume set of textbooks in introductory physics written at the calculus level and designed primarily for students with career objectives in the life sciences.

Shedding Light on the Sea: André Morel's Legacy to Optical Oceanography

Science.gov (United States)

Antoine, David; Babin, Marcel; Berthon, Jean-François; Bricaud, Annick; Gentili, Bernard; Loisel, Hubert; Maritorena, Stéphane; Stramski, Dariusz

2014-01-01

André Morel (1933-2012) was a prominent pioneer of modern optical oceanography, enabling significant advances in this field. Through his forward thinking and research over more than 40 years, he made key contributions that this field needed to grow and to reach its current status. This article first summarizes his career and then successively covers different aspects of optical oceanography where he made significant contributions, from fundamental work on optical properties of water and particles to global oceanographic applications using satellite ocean color observations. At the end, we share our views on André's legacy to our research field and scientific community.

Physical biology of human brain development

Directory of Open Access Journals (Sweden)

Silvia eBudday

2015-07-01

Full Text Available Neurodevelopment is a complex, dynamic process that involves a precisely orchestrated sequence of genetic, environmental, biochemical, and physical events. Developmental biology and genetics have shaped our understanding of the molecular and cellular mechanisms during neurodevelopment. Recent studies suggest that physical forces play a central role in translating these cellular mechanisms into the complex surface morphology of the human brain. However, the precise impact of neuronal differentiation, migration, and connection on the physical forces during cortical folding remains unknown. Here we review the cellular mechanisms of neurodevelopment with a view towards surface morphogenesis, pattern selection, and evolution of shape. We revisit cortical folding as the instability problem of constrained differential growth in a multi-layered system. To identify the contributing factors of differential growth, we map out the timeline of neurodevelopment in humans and highlight the cellular events associated with extreme radial and tangential expansion. We demonstrate how computational modeling of differential growth can bridge the scales-from phenomena on the cellular level towards form and function on the organ level-to make quantitative, personalized predictions. Physics-based models can quantify cortical stresses, identify critical folding conditions, rationalize pattern selection, and predict gyral wavelengths and gyrification indices. We illustrate that physical forces can explain cortical malformations as emergent properties of developmental disorders. Combining biology and physics holds promise to advance our understanding of human brain development and enable early diagnostics of cortical malformations with the ultimate goal to improve treatment of neurodevelopmental disorders including epilepsy, autism spectrum disorders, and schizophrenia.

Biological, chemical and medical physics

International Nuclear Information System (INIS)

1990-01-01

This is an overview of the actual situation in Brazil, concerning three important areas of physics: biological, chemical and medical. It gives a brief historical of research in these areas. It talks as well, about perspectives and financing. It contains many tables with the main research groups in activity in Brazilian institutions. (A.C.A.S.)

Physical Activity, Physical Performance, and Biological Markers of Health among Sedentary Older Latinos

Directory of Open Access Journals (Sweden)

Gerardo Moreno

2014-01-01

Full Text Available Background. Physical activity is associated with better physical health, possibly by changing biological markers of health such as waist circumference and inflammation, but these relationships are unclear and even less understood among older Latinos—a group with high rates of sedentary lifestyle. Methods. Participants were 120 sedentary older Latino adults from senior centers. Community-partnered research methods were used to recruit participants. Inflammatory (C-reactive protein and metabolic markers of health (waist circumference, HDL-cholesterol, triglycerides, insulin, and glucose, physical activity (Yale physical activity survey, and physical performance (short physical performance NIA battery were measured at baseline and 6-month followup. Results. Eighty percent of the sample was female. In final adjusted cross-sectional models, better physical activity indices were associated with faster gait speed (P<0.05. In adjusted longitudinal analyses, change in self-reported physical activity level correlated inversely with change in CRP (β=-0.05; P=0.03 and change in waist circumference (β=-0.16; P=0.02. Biological markers of health did not mediate the relationship between physical activity and physical performance. Conclusion. In this community-partnered study, higher physical activity was associated with better physical performance in cross-sectional analyses. In longitudinal analysis, increased physical activity was associated with improvements in some metabolic and inflammatory markers of health.

Physics in Brazil in the next decade: atomic, molecular and optical physics, biological, chemical and medical physics, physics teaching and plasma physics

International Nuclear Information System (INIS)

1990-01-01

This is an overview of physics in Brazil in the next decade. It is specially concerned with atomic, molecular and optical physics, biological chemical and medical physics, and also teaching of physics and plasma physics. It presents the main research groups in Brazil in the above mentioned areas. It talks as well, about financing new projects and the costs involved to improve these areas. (A.C.A.S.)

BOOK REVIEW Handbook of Physics in Medicine and Biology Handbook of Physics in Medicine and Biology

Science.gov (United States)

Tabakov, Slavik

2010-11-01

This is a multi-author handbook (66 authors) aiming to describe various applications of physics to medicine and biology, from anatomy and physiology to medical equipment. This unusual reference book has 44 chapters organized in seven sections: 1. Anatomical physics; 2. Physics of perception; 3. Biomechanics; 4. Electrical physics; 5. Diagnostic physics; 6. Physics of accessory medicine; 7. Physics of bioengineering. Each chapter has separate page numbering, which is inconvenient but understandable with the number of authors. Similarly there is some variation in the emphasis of chapters: for some the emphasis is more technical and for others clinical. Each chapter has a separate list of references. The handbook includes hundreds of diagrams, images and tables, making it a useful tool for both medical physicists/engineers and other medical/biology specialists. The first section (about 40 pages) includes five chapters on physics of the cell membrane; protein signaling; cell biology and biophysics of the cell membrane; cellular thermodynamics; action potential transmission and volume conduction. The physics of these is well explained and illustrated with clear diagrams and formulae, so it could be a suitable reference for physicists/engineers. The chapters on cellular thermodynamics and action potential transmission have a very good balance of technical/clinical content. The second section (about 85 pages) includes six chapters on medical decision making; senses; somatic senses: touch and pain; hearing; vision; electroreception. Again these are well illustrated and a suitable reference for physicists/engineers. The chapter on hearing stands out with good balance and treatment of material, but some other chapters contain less physics and are close to typical physiological explanations. One could query the inclusion of the chapter on medical decision making, which also needs more detail. The third section (about 80 pages) includes eight chapters on biomechanics

Naval Meteorology and Oceanography Command exhibit entrance

Science.gov (United States)

2000-01-01

StenniSphere at NASA's John C. Stennis Space Center in Hancock County, Miss., invites visitors to discover why America comes to Stennis Space Center before going into space. Designed to entertain while educating, StenniSphere includes informative displays and exhibits from NASA and other agencies located at Stennis, such as this one from the Naval Meteorology and Oceanography Command. Visitors can 'travel' three-dimensionally under the sea and check on the weather back home in the Weather Center.

Operationele Oceanografie en Rapid Environmental Assessment (Operational Oceanography and Rapid Environmental Assessment)

National Research Council Canada - National Science Library

te Raa, L. A; Lam, F. P; Schouten, M. W

2008-01-01

.... Possible applications of operational oceanography in REA include improved sonar performance predictions with three-dimensional sound speed forecasts, support of AUV mission planning with the help...

Some aspects of biological production and fishery resources of the EEZ of India

Digital Repository Service at National Institute of Oceanography (India)

Bhargava, R.M.S.

Region and season-wise biological production in the Exclusive Economic Zone (EEZ) of India has been computed from the data of more than twenty years available at the Indian National Oceanographic Data Centre of the National Institute of Oceanography...

Oceanography: 1998 Paris Meeting Abstracts: Coastal and Marginal Seas. Volume 11, Number 2

National Research Council Canada - National Science Library

Rhodes, Judith

1998-01-01

This grant supported a successful international multidisciplinary scientific meeting addressing the topic "Coastal and Marginal Seas," hosted by The Oceanography Society and UNESCO's Intergovernmental...

Physical integrity: the missing link in biological monitoring and TMDLs.

Science.gov (United States)

Asmus, Brenda; Magner, Joseph A; Vondracek, Bruce; Perry, Jim

2009-12-01

The Clean Water Act mandates that the chemical, physical, and biological integrity of our nation's waters be maintained and restored. Physical integrity has often been defined as physical habitat integrity, and as such, data collected during biological monitoring programs focus primarily on habitat quality. However, we argue that channel stability is a more appropriate measure of physical integrity and that channel stability is a foundational element of physical habitat integrity in low-gradient alluvial streams. We highlight assessment tools that could supplement stream assessments and the Total Maximum Daily Load stressor identification process: field surveys of bankfull cross-sections; longitudinal thalweg profiles; particle size distribution; and regionally calibrated, visual, stream stability assessments. Benefits of measuring channel stability include a more informed selection of reference or best attainable stream condition for an Index of Biotic Integrity, establishment of a baseline for monitoring changes in present and future condition, and indication of channel stability for investigations of chemical and biological impairments associated with sediment discontinuity and loss of habitat quality.

Research at the interface of physics and biology: bridging the two fields

Science.gov (United States)

Shukla, Kamal

2014-10-01

I firmly believe that interaction between physics and biology is not only natural, but inevitable. Kamal Shukla provides a personal perspective on working at the interface between the physical and biological sciences.

Getting the measure of things: the physical biology of stem cells.

Science.gov (United States)

Lowell, Sally

2013-10-01

In July 2013, the diverse fields of biology, physics and mathematics converged to discuss 'The Physical Biology of Stem Cells', the subject of the third annual symposium of the Cambridge Stem Cell Institute, UK. Two clear themes resonated throughout the meeting: the new insights gained from advances in the acquisition and interpretation of quantitative data; and the importance of 'thinking outside the nucleus' to consider physical influences on cell fate.

Breaking Frontiers: Submicron Structures in Physics and Biology - 52 Zakopane School of Physics

International Nuclear Information System (INIS)

2008-01-01

The 52 Zakopane School of Physics held in Zakopane from 19 to 24 May 2008. The main task of the symposium was to present the newest results of research in field of submicron structures in physics, biology and medicine. Some new technologies as well as their applications are also presented

Breaking Frontiers: Submicron Structures in Physics and Biology - 52 Zakopane School of Physics

Energy Technology Data Exchange (ETDEWEB)

NONE

2008-07-01

The 52 Zakopane School of Physics held in Zakopane from 19 to 24 May 2008. The main task of the symposium was to present the newest results of research in field of submicron structures in physics, biology and medicine. Some new technologies as well as their applications are also presented.

Space plasma physics stationary processes

CERN Document Server

Hasegawa, Akira

1989-01-01

During the 30 years of space exploration, important discoveries in the near-earth environment such as the Van Allen belts, the plasmapause, the magnetotail and the bow shock, to name a few, have been made. Coupling between the solar wind and the magnetosphere and energy transfer processes between them are being identified. Space physics is clearly approaching a new era, where the emphasis is being shifted from discoveries to understanding. One way of identifying the new direction may be found in the recent contribution of atmospheric science and oceanography to the development of fluid dynamics. Hydrodynamics is a branch of classical physics in which important discoveries have been made in the era of Rayleigh, Taylor, Kelvin and Helmholtz. However, recent progress in global measurements using man-made satellites and in large scale computer simulations carried out by scientists in the fields of atmospheric science and oceanography have created new activities in hydrodynamics and produced important new discover...

Meeting summary housing and registration information

Science.gov (United States)

The 1986 Ocean Sciences Meeting of the American Geophysical Union and the American Society of Limnology and Oceanography (ASLO) will be held January 13-17, 1986, in New Orleans, La., at the Fairmont Hotel. Co-sponsoring societies are the Acoustical Society of America (ASA), the American Meteorological Society (AMS), the Marine Technology Society (MTS), and the Institute of Electrical and Electronics Engineers, Oceanic Engineering Society (OES).Some of the most compelling problems in science and technology span two or more disciplines, and this is especially true of oceanography, which is an amalgamation of several sciences with technology. This meeting will cover topics that include physical and biological oceanography, atmospheric sciences, chemical and geological oceanography, underwater acoustics, and ocean technology.

From Proposal Writing to Data Collection to Presentation: Physical Oceanography Laboratory Class Students Explore the Fundamentals of Science

Science.gov (United States)

Buijsman, M. C.; Church, I.; Haydel, J.; Martin, K. M.; Shiller, A. M.; Wallace, D. J.; Blancher, J.; Foltz, A.; Griffis, A. M.; Kosciuch, T. J.; Kincketootle, A.; Pierce, E.; Young, V. A.

2016-02-01

To better prepare first-year Department of Marine Science MSc students of the University of Southern Mississippi for their science careers, we plan to execute a semester-long Physical Oceanography laboratory class that exposes the enrolled students to all aspects of interdisciplinary research: writing a proposal, planning a cruise, collecting and analyzing data, and presenting their results. Although some of these aspects may be taught in any such class, the incorporation of all these aspects makes this class unique.The fieldwork will be conducted by boat in the Rigolets in Louisiana, a 13-km long tidal strait up to 1 km wide connecting the Mississippi Sound with Lake Pontchartrain. The students have the opportunity to collect ADCP, CTD, multibeam sonar, sediment and water samples.A second novel characteristic of this class is that the instructor partnered with the Lake Pontchartrain Basin Foundation, a not for profit environmental advocacy group. The foundation will give an hour-long seminar on the natural history of the study area and its environmental problems. This information provides context for the students' research proposals and allows them to formulate research questions and hypotheses that connect their research objectives to societally relevant issues, such as coastal erosion, salt water intrusion, and water quality. The proposal writing and cruise planning is done in the first month of the 3.5-month long semester. In the second month two surveys are conducted. The remainder of the semester is spent on analysis and reporting. Whenever possible we teach Matlab for the students to use in their data analysis. In this presentation, we will report on the successes and difficulties associated with teaching such a multi-faceted class.

Biological/Genetic Regulation of Physical Activity Level: Consensus from GenBioPAC.

Science.gov (United States)

Lightfoot, J Timothy; DE Geus, Eco J C; Booth, Frank W; Bray, Molly S; DEN Hoed, Marcel; Kaprio, Jaakko; Kelly, Scott A; Pomp, Daniel; Saul, Michael C; Thomis, Martine A; Garland, Theodore; Bouchard, Claude

2018-04-01

Physical activity unquestionably maintains and improves health; however, physical activity levels globally are low and not rising despite all the resources devoted to this goal. Attention in both the research literature and the public policy domain has focused on social-behavioral factors; however, a growing body of literature suggests that biological determinants play a significant role in regulating physical activity levels. For instance, physical activity level, measured in various manners, has a genetic component in both humans and nonhuman animal models. This consensus article, developed as a result of an American College of Sports Medicine-sponsored round table, provides a brief review of the theoretical concepts and existing literature that supports a significant role of genetic and other biological factors in the regulation of physical activity. Future research on physical activity regulation should incorporate genetics and other biological determinants of physical activity instead of a sole reliance on social and other environmental determinants.

WE-DE-202-00: Connecting Radiation Physics with Computational Biology

International Nuclear Information System (INIS)

2016-01-01

Radiation therapy for the treatment of cancer has been established as a highly precise and effective way to eradicate a localized region of diseased tissue. To achieve further significant gains in the therapeutic ratio, we need to move towards biologically optimized treatment planning. To achieve this goal, we need to understand how the radiation-type dependent patterns of induced energy depositions within the cell (physics) connect via molecular, cellular and tissue reactions to treatment outcome such as tumor control and undesirable effects on normal tissue. Several computational biology approaches have been developed connecting physics to biology. Monte Carlo simulations are the most accurate method to calculate physical dose distributions at the nanometer scale, however simulations at the DNA scale are slow and repair processes are generally not simulated. Alternative models that rely on the random formation of individual DNA lesions within one or two turns of the DNA have been shown to reproduce the clusters of DNA lesions, including single strand breaks (SSBs), double strand breaks (DSBs) without the need for detailed track structure simulations. Efficient computational simulations of initial DNA damage induction facilitate computational modeling of DNA repair and other molecular and cellular processes. Mechanistic, multiscale models provide a useful conceptual framework to test biological hypotheses and help connect fundamental information about track structure and dosimetry at the sub-cellular level to dose-response effects on larger scales. In this symposium we will learn about the current state of the art of computational approaches estimating radiation damage at the cellular and sub-cellular scale. How can understanding the physics interactions at the DNA level be used to predict biological outcome? We will discuss if and how such calculations are relevant to advance our understanding of radiation damage and its repair, or, if the underlying biological

WE-DE-202-00: Connecting Radiation Physics with Computational Biology

Energy Technology Data Exchange (ETDEWEB)

NONE

2016-06-15

Radiation therapy for the treatment of cancer has been established as a highly precise and effective way to eradicate a localized region of diseased tissue. To achieve further significant gains in the therapeutic ratio, we need to move towards biologically optimized treatment planning. To achieve this goal, we need to understand how the radiation-type dependent patterns of induced energy depositions within the cell (physics) connect via molecular, cellular and tissue reactions to treatment outcome such as tumor control and undesirable effects on normal tissue. Several computational biology approaches have been developed connecting physics to biology. Monte Carlo simulations are the most accurate method to calculate physical dose distributions at the nanometer scale, however simulations at the DNA scale are slow and repair processes are generally not simulated. Alternative models that rely on the random formation of individual DNA lesions within one or two turns of the DNA have been shown to reproduce the clusters of DNA lesions, including single strand breaks (SSBs), double strand breaks (DSBs) without the need for detailed track structure simulations. Efficient computational simulations of initial DNA damage induction facilitate computational modeling of DNA repair and other molecular and cellular processes. Mechanistic, multiscale models provide a useful conceptual framework to test biological hypotheses and help connect fundamental information about track structure and dosimetry at the sub-cellular level to dose-response effects on larger scales. In this symposium we will learn about the current state of the art of computational approaches estimating radiation damage at the cellular and sub-cellular scale. How can understanding the physics interactions at the DNA level be used to predict biological outcome? We will discuss if and how such calculations are relevant to advance our understanding of radiation damage and its repair, or, if the underlying biological

West Hackberry Strategic Petroleum Reserve site brine disposal monitoring, Year I report. Volume V. Supporting data for estuarine hydrology, discharge plume analysis, chemical oceanography, biological oceanography, and data management. Final report

Energy Technology Data Exchange (ETDEWEB)

DeRouen, L.R.; Hann, R.W.; Casserly, D.M.; Giammona, C.; Lascara, V.J. (eds.)

1983-02-01

This project centers around the Strategic Petroleum Site (SPR) known as the West Hackberry salt dome which located in southwestern Louisiana, and which is designed to store 241 million barrels of crude oil. Oil storage caverns are formed by injecting water into salt deposits, and pumping out the resulting brine. Studies described in this report were designed as follow-on studies to three months of pre-discharge characterization work, and include data collected during the first year of brine leaching operations. The objectives were to: (1) characterize the environment in terms of physical, chemical and biological attributes; (2) determine if significant adverse changes in ecosystem productivity and stability of the biological community are occurring as a result of brine discharge; and (3) determine the magnitude of any change observed. Volume V contains appendices for the following: supporting data for estuarine hydrology and hydrography; supporting data analysis of discharge plume; supporting data for water and sediment chemistry; CTD/DO and pH profiles during biological monitoring; supporting data for nekton; and supporting data for data management.

Three genetic stocks of frigate tuna Auxis thazard thazard (Lacepede, 1800) along the Indian coast revealed from sequence analyses of mitochondrial DNA D-loop region

Digital Repository Service at National Institute of Oceanography (India)

GirishKumar; Kunal, S.P.; Menezes, M.R.; Meena, R.M.

revealed from sequence analyses of mitochondrial DNA D-loop region Name of authors: 1. Girish Kumar* Biological Oceanography Division (BOD) National Institute of Oceanography (NIO) Dona Paula, Goa 403004, India. Email: girishkumar....nio@gmail.com Tel: +919766548060 2. Swaraj Priyaranjan Kunal Biological Oceanography Division (BOD) National Institute of Oceanography (NIO) Dona Paula, Goa 403004, India. Email: swar.mbt@gmail.com 3. Maria Rosalia Menezes Biological Oceanography...

Conference: Statistical Physics and Biological Information

International Nuclear Information System (INIS)

Gross, David J.; Hwa, Terence

2001-01-01

In the spring of 2001, the Institute for Theoretical Physics ran a 6 month scientific program on Statistical Physics and Biological Information. This program was organized by Walter Fitch (UC Irvine), Terence Hwa (UC San Diego), Luca Peliti (University Federico II), Naples Gary Stormo (Washington University School of Medicine) and Chao Tang (NEC). Overall scientific supervision was provided by David Gross, Director, ITP. The ITP has an online conference/program proceeding which consists of audio and transparencies of almost all of the talks held during this program. Over 100 talks are available on the site at http://online.kitp.ucsb.edu/online/infobio01/

The Indigo V Indian Ocean Expedition: a prototype for citizen microbial oceanography

DEFF Research Database (Denmark)

Lauro, Frederico; Senstius, Svend Jacob; Cullen, Jay

2014-01-01

Microbial Oceanography has long been an extremely expensive discipline, requiring ship time for sample collection and thereby economically constraining the number of samples collected. This is especially true for under-sampled water bodies such as the Indian Ocean. Specialised scientific equipmen...

Applications of 14C-AMS on archaeology, climate, environment, geology, oceanography and biology

International Nuclear Information System (INIS)

Gomes, P.R.S.; Anjos, R.M.; Macario, K.D.; Santos, G.M.

2005-01-01

The first experiment discusses the chronology of prehistoric settlements of the central-south Brazilian coast. In the southern Brazilian coast there is a high density of these shellmounds, dated in general between 6,000 and 2,000 BP. A charcoal sample from a coastal shellmound of Rio de Janeiro State was dated by 14 C-AMS to 7,860±80 years BP. This is an unexpected result that pulls back by some two thousand years the antiquity consensually accepted for the settlement of that region. We performed an experiment concerning the isotopic signature of the local waters of an important Brazilian coastal upwelling, located in Arraial do Cabo, R.J., with applications in the fields of Oceanography and Marine Ecology. We assess the contribution of the wind-driven coastal upwelling of Arraial do Cabo to the local biological production. The variation of the carbon isotopic compositions was investigated in a population of a seaweed. Upwelling events were simulated in the laboratory, in order to study three regimes: total upwelling (SACW), partial upwelling (mixed water) and no-upwelling (TW). Water samples were collected at 70 m depth (SACW) and at 10 m (TW). The seaweed was cultivated during seven days, in controlled conditions, into the three mentioned types of water. The results of 14 C-AMS measurements in the seaweed tissue show a clear indication of difference in the isotopic signature of the water sources, allowing to infer the differences of the water sources. We believe that the present results contribute to opening new perspectives for the use of 14 C as a tracer of the biological production in upwelling areas all over the world. The next reported experiment is on climate at the Amazon region. An increase in the Hg flux is a strong indicator of disturbance in a forest ecosystem related to abrupt changes in the water balance, and its changes reflect changes in the ocean and average regional temperatures. In regions where the geological background of mercury is

Oceanographic profiles of temperature, salinity, nutrients, and plankton in the Mediterranean Sea from the CEAB institute (1979-1997) (NODC Accession 0044830)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Historical profile physical, chemical, and biological data collected in the Mediterranean Sea and submitted by Dr. Antonio Cruzado, head oceanography laboratory, and...

Perspectives on theory at the interface of physics and biology

Science.gov (United States)

Bialek, William

2018-01-01

Theoretical physics is the search for simple and universal mathematical descriptions of the natural world. In contrast, much of modern biology is an exploration of the complexity and diversity of life. For many, this contrast is prima facie evidence that theory, in the sense that physicists use the word, is impossible in a biological context. For others, this contrast serves to highlight a grand challenge. I am an optimist, and believe (along with many colleagues) that the time is ripe for the emergence of a more unified theoretical physics of biological systems, building on successes in thinking about particular phenomena. In this essay I try to explain the reasons for my optimism, through a combination of historical and modern examples.

IMOS National Reference Stations: A Continental-Wide Physical, Chemical and Biological Coastal Observing System

Science.gov (United States)

Lynch, Tim P.; Morello, Elisabetta B.; Evans, Karen; Richardson, Anthony J.; Rochester, Wayne; Steinberg, Craig R.; Roughan, Moninya; Thompson, Peter; Middleton, John F.; Feng, Ming; Sherrington, Robert; Brando, Vittorio; Tilbrook, Bronte; Ridgway, Ken; Allen, Simon; Doherty, Peter; Hill, Katherine; Moltmann, Tim C.

2014-01-01

Sustained observations allow for the tracking of change in oceanography and ecosystems, however, these are rare, particularly for the Southern Hemisphere. To address this in part, the Australian Integrated Marine Observing System (IMOS) implemented a network of nine National Reference Stations (NRS). The network builds on one long-term location, where monthly water sampling has been sustained since the 1940s and two others that commenced in the 1950s. In-situ continuously moored sensors and an enhanced monthly water sampling regime now collect more than 50 data streams. Building on sampling for temperature, salinity and nutrients, the network now observes dissolved oxygen, carbon, turbidity, currents, chlorophyll a and both phytoplankton and zooplankton. Additional parameters for studies of ocean acidification and bio-optics are collected at a sub-set of sites and all data is made freely and publically available. Our preliminary results demonstrate increased utility to observe extreme events, such as marine heat waves and coastal flooding; rare events, such as plankton blooms; and have, for the first time, allowed for consistent continental scale sampling and analysis of coastal zooplankton and phytoplankton communities. Independent water sampling allows for cross validation of the deployed sensors for quality control of data that now continuously tracks daily, seasonal and annual variation. The NRS will provide multi-decadal time series, against which more spatially replicated short-term studies can be referenced, models and remote sensing products validated, and improvements made to our understanding of how large-scale, long-term change and variability in the global ocean are affecting Australia's coastal seas and ecosystems. The NRS network provides an example of how a continental scaled observing systems can be developed to collect observations that integrate across physics, chemistry and biology. PMID:25517905

IMOS National Reference Stations: a continental-wide physical, chemical and biological coastal observing system.

Directory of Open Access Journals (Sweden)

Tim P Lynch

Full Text Available Sustained observations allow for the tracking of change in oceanography and ecosystems, however, these are rare, particularly for the Southern Hemisphere. To address this in part, the Australian Integrated Marine Observing System (IMOS implemented a network of nine National Reference Stations (NRS. The network builds on one long-term location, where monthly water sampling has been sustained since the 1940s and two others that commenced in the 1950s. In-situ continuously moored sensors and an enhanced monthly water sampling regime now collect more than 50 data streams. Building on sampling for temperature, salinity and nutrients, the network now observes dissolved oxygen, carbon, turbidity, currents, chlorophyll a and both phytoplankton and zooplankton. Additional parameters for studies of ocean acidification and bio-optics are collected at a sub-set of sites and all data is made freely and publically available. Our preliminary results demonstrate increased utility to observe extreme events, such as marine heat waves and coastal flooding; rare events, such as plankton blooms; and have, for the first time, allowed for consistent continental scale sampling and analysis of coastal zooplankton and phytoplankton communities. Independent water sampling allows for cross validation of the deployed sensors for quality control of data that now continuously tracks daily, seasonal and annual variation. The NRS will provide multi-decadal time series, against which more spatially replicated short-term studies can be referenced, models and remote sensing products validated, and improvements made to our understanding of how large-scale, long-term change and variability in the global ocean are affecting Australia's coastal seas and ecosystems. The NRS network provides an example of how a continental scaled observing systems can be developed to collect observations that integrate across physics, chemistry and biology.

Ionising radiation - physical and biological effects

International Nuclear Information System (INIS)

Holter, Oe.; Ingebretsen, F.; Parr, H.

1979-01-01

The physics of ionising radiation is briefly presented. The effects of ionising radiation on biological cells, cell repair and radiosensitivity are briefly treated, where after the effects on man and mammals are discussed and related to radiation doses. Dose limits are briefly discussed. The genetic effects are discussed separately. Radioecology is also briefly treated and a table of radionuclides deriving from reactors, and their radiation is given. (JIW)

Effective, Active Learning Strategies for the Oceanography Classroom

Science.gov (United States)

Dmochowski, J. E.; Marinov, I.

2014-12-01

A decline in enrollment in STEM fields at the university level has prompted extensive research on alternative ways of teaching and learning science. Inquiry-based learning as well as the related "flipped" or "active" lectures, and similar teaching methods and philosophies have been proposed as more effective ways to disseminate knowledge in science classes than the traditional lecture. We will provide a synopsis of our experiences in implementing some of these practices into our Introductory Oceanography, Global Climate Change, and Ocean Atmosphere Dynamics undergraduate courses at the University of Pennsylvania, with both smaller and larger enrollments. By implementing tools such as at-home modules; computer labs; incorporation of current research; pre- and post-lecture quizzes; reflective, qualitative writing assignments; peer review; and a variety of in-class learning strategies, we aim to increase the science literacy of the student population and help students gain a more comprehensive knowledge of the topic, enhance their critical thinking skills, and correct misconceptions. While implementing these teaching techniques with college students is not without complications, we argue that a blended class that flexibly and creatively accounts for class size and science level improves the learning experience and the acquired knowledge. We will present examples of student assignments and activities as well as describe the lessons we have learned, and propose ideas for moving forward to best utilize innovative teaching tools in order to increase science literacy in oceanography and other climate-related courses.

An electronic atlas on the oceanography of the South China Sea

Science.gov (United States)

Rostov, I. D.; Moroz, V. V.; Rudykh, N. I.; Rostov, V. I.

2009-12-01

The digital atlas on CD ROM includes a set of generalized data on the South China Sea oceanography. The data is presented in the form of spreadsheets, graphics, and text. The atlas contains a brief annotated description of the main physical-geographical characteristics and the particularities of the hydrological regime, water masses, tidal phenomena, and water mass circulation. The atlas is an interactive information-reference system including elements of dynamic data visualization. It contains a body of data on the long-term observations of the temperature and salinity; gridded blocks of the average annual, seasonal, and monthly data at the standard depth horizons; and data on the hydrochemical characteristics and water currents obtained by automatic buoy stations (ABS). A list of existing open access data bases and web sites is given where additional online and archived information on a range of special issues and problems related to regional studies and exploitation is provided. The system allows for fast access to specifically selected online or generalized reference information (via the Internet) and for its imaging.

Simbios: an NIH national center for physics-based simulation of biological structures.

Science.gov (United States)

Delp, Scott L; Ku, Joy P; Pande, Vijay S; Sherman, Michael A; Altman, Russ B

2012-01-01

Physics-based simulation provides a powerful framework for understanding biological form and function. Simulations can be used by biologists to study macromolecular assemblies and by clinicians to design treatments for diseases. Simulations help biomedical researchers understand the physical constraints on biological systems as they engineer novel drugs, synthetic tissues, medical devices, and surgical interventions. Although individual biomedical investigators make outstanding contributions to physics-based simulation, the field has been fragmented. Applications are typically limited to a single physical scale, and individual investigators usually must create their own software. These conditions created a major barrier to advancing simulation capabilities. In 2004, we established a National Center for Physics-Based Simulation of Biological Structures (Simbios) to help integrate the field and accelerate biomedical research. In 6 years, Simbios has become a vibrant national center, with collaborators in 16 states and eight countries. Simbios focuses on problems at both the molecular scale and the organismal level, with a long-term goal of uniting these in accurate multiscale simulations.

Coordinating an IPLS class with a biology curriculum: NEXUS/Physics

Science.gov (United States)

Redish, Edward

2014-03-01

A multi-disciplinary team of scientists has been reinventing the Introductory Physics for Life Scientists (IPLS) course at the University of Maryland. We focus on physics that connects elements common to the curriculum for all life scientists - molecular and cellular biology - with building general scientific competencies, such as mathematical modeling, reasoning from core principles, and multi-representation translation. The prerequisites for the class include calculus, chemistry, and biology. In addition to building the basic ideas of the Newtonian framework, electric currents, and optics, our prerequisites allow us to include topics such as atomic interactions and chemical bonding, random motion and diffusion, thermodynamics (including entropy and free energy), and spectroscopy. Our chemical bonding unit helps students link the view of energy developed in traditional macroscopic physics with the idea of chemical bonding as a source of energy presented in their chemistry and biology classes. Education research has played a central role in our design, as has a strong collaboration between our Discipline-Based Education and the Biophysics Research groups. These elements permit us to combine modern pedagogy with cutting-edge insights into the physics of living systems. Supported in part by a grant from HHMI and the US NSF grant #1122818/.

Marine Science Teaching at the University Level. Report of the Unesco Workshop on University Curricula. Unesco Technical Papers in Marine Science No. 19.

Science.gov (United States)

United Nations Educational, Scientific, and Cultural Organization, Paris (France). Div. of Marine Sciences.

A group of marine science education educators from several countries were requested to provide guidelines for the education and training of marine scientists and formulate recommended curricula in the following disciplines: marine biology (including fisheries biology), physical oceanography, and marine geology. Included in the report are: (1)…

Physical parameters and biological effects of the LVR-15 epithermal neutron beam

International Nuclear Information System (INIS)

Burian, J.; Marek, M.; Rejchrt, J.; Viererbl, L.; Gambarini, G.; Mares, V.; Vanossi, E.; Judas, L.

2006-01-01

Monitoring of the physical and biological properties of the epithermal neutron beam constructed at the multipurpose LVR-15 nuclear reactor for NCT therapy of brain tumors showed that its physical and biological properties are stable in time and independent on an ad hoc reconfiguration of the reactor core before its therapeutic use. Physical parameters were monitored by measurement of the neutron spectrum, neutron profile, fast neutron kerma rate in tissue and photon absorbed dose, the gel dosimetry was used with the group of standard measurement methods. The RBE of the beam, as evaluated by 3 different biological models, including mouse intestine crypt regeneration assay, germinative zones of the immature rat brain and C6 glioma cells in culture, ranged from 1.70 to 1.99. (author)

Advances in Physical and Biological Radiation Detectors. Proceedings of a Symposium on New Developments in Physical and Biological Radiation Detectors

International Nuclear Information System (INIS)

1971-01-01

Radiation dosimetry is a fundamental part of all radiation protection work. The measurements are made with a variety of instruments, and health physicists, after professional interpretation of the data, can assess the levels of exposure which might be encountered in a given area or the individual doses received by workers, visitors and others at places where the possibility of radiation exposure exists. The types of radiation concerned here are photon radiations, ranging from soft X-rays to gamma rays, and particulate radiations such as β-rays, α-particles, protons, neutrons and fission fragments. The type of technique used depends not only on the type of radiation but also on such factors as whether the radiation is from a source internal or external to the body. Radiation dosimetry is not only used at nuclear facilities; it has diverse applications, for example in determining doses when radiation sources are employed for medical diagnostics and therapy, in safeguarding workers in any industry where isotopes are used, and in assessing the effect of both naturally occurring and man-made radiations on the general public and the environment. The advances of modern technology have increased the variety of sources; an example can be given from colour television, where the high potential necessary in certain colour cathode-ray tubes generates a non-negligible amount of X-rays. The Symposium on New Developments in Physical and Biological Radiation Detectors was one of a continuing series of meetings in which the International Atomic Energy Agency furthers the exchange of information on all aspects of personnel and area dosimetry. The Symposium was devoted in particular to a study of the dose meters themselves - their radiation-sensitive elements (both physical and biological),their instrumentation, and calibration and standardization. Several speakers suggested that the situation in the standardization and calibration of measuring equipment and sources was

Microbiology and atmospheric processes: biological, physical and chemical characterization of aerosol particles

Directory of Open Access Journals (Sweden)

D. G. Georgakopoulos

2009-04-01

Full Text Available The interest in bioaerosols has traditionally been linked to health hazards for humans, animals and plants. However, several components of bioaerosols exhibit physical properties of great significance for cloud processes, such as ice nucleation and cloud condensation. To gain a better understanding of their influence on climate, it is therefore important to determine the composition, concentration, seasonal fluctuation, regional diversity and evolution of bioaerosols. In this paper, we will review briefly the existing techniques for detection, quantification, physical and chemical analysis of biological particles, attempting to bridge physical, chemical and biological methods for analysis of biological particles and integrate them with aerosol sampling techniques. We will also explore some emerging spectroscopy techniques for bulk and single-particle analysis that have potential for in-situ physical and chemical analysis. Lastly, we will outline open questions and further desired capabilities (e.g., in-situ, sensitive, both broad and selective, on-line, time-resolved, rapid, versatile, cost-effective techniques required prior to comprehensive understanding of chemical and physical characterization of bioaerosols.

Applications of Oregon State University's TRIGA reactor in health physics education

International Nuclear Information System (INIS)

Higginbotham, J.F.

1990-01-01

The Oregon State University TRIGA reactor (OSTR) is used to support a broad range of traditional academic disciplines, including anthropology, oceanography, geology, physics, nuclear chemistry, and nuclear engineering. However, it also finds extensive application in the somewhat more unique area of health physics education and research. This paper summarizes these health physics applications and briefly describes how the OSTR makes important educational contributions to the field of health physics

Bringing the physical sciences into your cell biology research.

Science.gov (United States)

Robinson, Douglas N; Iglesias, Pablo A

2012-11-01

Historically, much of biology was studied by physicists and mathematicians. With the advent of modern molecular biology, a wave of researchers became trained in a new scientific discipline filled with the language of genes, mutants, and the central dogma. These new molecular approaches have provided volumes of information on biomolecules and molecular pathways from the cellular to the organismal level. The challenge now is to determine how this seemingly endless list of components works together to promote the healthy function of complex living systems. This effort requires an interdisciplinary approach by investigators from both the biological and the physical sciences.

Radiations at the physics-biology interface. Utilization of radiations for research

International Nuclear Information System (INIS)

Douzou, P.

1997-01-01

Structural biology, which study the relation between the structure of biomolecules and their function, is at the interface between physics and biology. With the help of large radiation instruments such as X ray diffraction and neutron scattering, important advancements have been accomplished in the understanding of specific biological functions and led to the development of protein engineering (such as directed mutagenesis)

Ranking serials in oceanography: An analysis based on the Indian contributions and their citations

Digital Repository Service at National Institute of Oceanography (India)

Tapaswi, M.P.; Maheswarappa, B.S.

An analysis of serials preferred and cited in various communications by the Indian oceanographers during 1963 to 1992 is presented. A shift in preference of serials from general sciences to oceanography (interdisciplinary) and to core subject...

Conference: Statistical Physics and Biological Information; F

International Nuclear Information System (INIS)

Gross, David J.; Hwa, Terence

2001-01-01

In the spring of 2001, the Institute for Theoretical Physics ran a 6 month scientific program on Statistical Physics and Biological Information. This program was organized by Walter Fitch (UC Irvine), Terence Hwa (UC San Diego), Luca Peliti (University Federico II), Naples Gary Stormo (Washington University School of Medicine) and Chao Tang (NEC). Overall scientific supervision was provided by David Gross, Director, ITP. The ITP has an online conference/program proceeding which consists of audio and transparencies of almost all of the talks held during this program. Over 100 talks are available on the site at http://online.kitp.ucsb.edu/online/infobio01/

The Cytoskeleton: Mechanical, Physical, and Biological Interactions

Science.gov (United States)

1996-01-01

This workshop, entitled "The Cytoskeleton: Mechanical, Physical, and Biological Interactions," was sponsored by the Center for Advanced Studies in the Space Life Sciences at the Marine Biological Laboratory. This Center was established through a cooperative agreement between the MBL and the Life Sciences Division of the National Aeronautics and Space Administration. To achieve these goals, the Center sponsors a series of workshops on various topics in the life sciences. Elements of the cytoskeleton have been implicated in the effects of gravity on the growth of plants fungi. An intriguing finding in this regard is the report indicating that an integrin-like protein may be the gravireceptor in the internodal cells of Chara. Involvement of the cytoskeleton in cellular graviperception of the basidiomycete Flammulina velutipes has also been reported. Although the responses of mammalian cells to gravity are not well documented, it has been proposed that integrins can act as mechanochemical transducers in mammalian cells. Little is known about the integrated mechanical and physical properties of cytoplasm, this workshop would be the best place to begin developing interdisciplinary approaches to the effects of mechanical stresses on cells and their most likely responsive cytoplasmic elements- the fibrous proteins comprising the cytoskeleton.

Geographical information system analysis for oceanographic parameters in the coastal waters of Goa, India - A case study

Digital Repository Service at National Institute of Oceanography (India)

Suryanarayana, A.; Joglekar, V.V.

A geographical information system (GIS) is used to create oceanography database and to do the spatial analysis of physical, chemical and biological characteristics of the coastal waters of Goa, India. Vector maps depicting distributions of currents...

An introduction to nuclear physics, with applications in medicine and biology

International Nuclear Information System (INIS)

Dyson, N.A.

1981-01-01

A concise account of the applications of nuclear physics to medical and biological science is given. Half the book is devoted to the basic aspects of nuclear and radiation physics such as interactions between radiation and matter, nuclear reactions and the production of isotopes, an introduction to α, β and γ-radiation detectors and finally the radiation from nuclear decay. Information is then given on the applications of radioisotopes and neutrons and other accelerator-based applications in medicine and biology. The book is aimed at not only those undergraduates and postgraduates who are devoting their main effort to medical physics, but also to those students who are looking primarily for an introduction to nuclear physics together with an account of some of the ways in which it impinges on the work of other scientists. (U.K.)

Putting the Deep Biosphere on the Map for Oceanography Courses: Gas Hydrates As a Case Study for the Deep Biosphere

Science.gov (United States)

Sikorski, J. J.; Briggs, B. R.

2014-12-01

The ocean is essential for life on our planet. It covers 71% of the Earth's surface, is the source of the water we drink, the air we breathe, and the food we eat. Yet, the exponential growth in human population is putting the ocean and thus life on our planet at risk. However, based on student evaluations from our introductory oceanography course it is clear that our students have deficiencies in ocean literacy that impact their ability to recognize that the ocean and humans are inextricably connected. Furthermore, life present in deep subsurface marine environments is also interconnected to the study of the ocean, yet the deep biosphere is not typically covered in undergraduate oceanography courses. In an effort to improve student ocean literacy we developed an instructional module on the deep biosphere focused on gas hydrate deposits. Specifically, our module utilizes Google Earth and cutting edge research about microbial life in the ocean to support three inquiry-based activities that each explore different facets of gas hydrates (i.e. environmental controls, biologic controls, and societal implications). The relevant nature of the proposed module also makes it possible for instructors of introductory geology courses to modify module components to discuss related topics, such as climate, energy, and geologic hazards. This work, which will be available online as a free download, is a solid contribution toward increasing the available teaching resources focused on the deep biosphere for geoscience educators.

Isobio software: biological dose distribution and biological dose volume histogram from physical dose conversion using linear-quadratic-linear model.

Science.gov (United States)

Jaikuna, Tanwiwat; Khadsiri, Phatchareewan; Chawapun, Nisa; Saekho, Suwit; Tharavichitkul, Ekkasit

2017-02-01

To develop an in-house software program that is able to calculate and generate the biological dose distribution and biological dose volume histogram by physical dose conversion using the linear-quadratic-linear (LQL) model. The Isobio software was developed using MATLAB version 2014b to calculate and generate the biological dose distribution and biological dose volume histograms. The physical dose from each voxel in treatment planning was extracted through Computational Environment for Radiotherapy Research (CERR), and the accuracy was verified by the differentiation between the dose volume histogram from CERR and the treatment planning system. An equivalent dose in 2 Gy fraction (EQD 2 ) was calculated using biological effective dose (BED) based on the LQL model. The software calculation and the manual calculation were compared for EQD 2 verification with pair t -test statistical analysis using IBM SPSS Statistics version 22 (64-bit). Two and three-dimensional biological dose distribution and biological dose volume histogram were displayed correctly by the Isobio software. Different physical doses were found between CERR and treatment planning system (TPS) in Oncentra, with 3.33% in high-risk clinical target volume (HR-CTV) determined by D 90% , 0.56% in the bladder, 1.74% in the rectum when determined by D 2cc , and less than 1% in Pinnacle. The difference in the EQD 2 between the software calculation and the manual calculation was not significantly different with 0.00% at p -values 0.820, 0.095, and 0.593 for external beam radiation therapy (EBRT) and 0.240, 0.320, and 0.849 for brachytherapy (BT) in HR-CTV, bladder, and rectum, respectively. The Isobio software is a feasible tool to generate the biological dose distribution and biological dose volume histogram for treatment plan evaluation in both EBRT and BT.

Physics and the molecular revolution in plant biology: union needed for managing the future

Directory of Open Access Journals (Sweden)

Ulrich Lüttge

2016-10-01

Full Text Available The question was asked if there is still a prominent role of biophysics in plant biology in an age when molecular biology appears to be dominating. Mathematical formation of theory is essential in systems biology, and mathematics is more inherent in biophysics than in molecular biology. A survey is made identifying and briefly characterizing fields of plant biology where approaches of biophysics remain essential. In transport at membranes electrophysiology and thermodynamics are biophysical topics. Water is a special molecule. Its transport follows the physical laws of osmosis and gradients of water potential on the background of physics of hydraulic architecture. Photobiology needs understanding of the physics of electro-magnetic radiation of quantitative nature in photosynthesis and of qualitative nature in perception by the photo-sensors cryptochromes, phototropins and phytochrome in environmental responses and development. Biophysical oscillators can play a role in biological timing by the circadian clock. Integration in the self-organization of modules, such as roots, stems and leaves, for the emergence of whole plants as unitary organisms needs storage and transport of information where physical modes of signaling are essential with cross talks between electrical and hydraulic signals and with chemical signals. Examples are gravitropism and root-shoot interactions in water relations. All of these facets of plant biophysics overlie plant molecular biology and exchange with it. It is advocated that a union of approaches of plant molecular biology and biophysics needs to be cultivated. In many cases it is already operative. In bionics biophysics is producing output for practical applications linking biology with technology. Biomimetic engineering intrinsically uses physical approaches. An extreme biophysical perspective is looking out for life in space. Sustained and increased practice of biophysics with teaching and research deserves strong

Interface between Physics and Biology: Training a New Generation of Creative Bilingual Scientists.

Science.gov (United States)

Riveline, Daniel; Kruse, Karsten

2017-08-01

Whereas physics seeks for universal laws underlying natural phenomena, biology accounts for complexity and specificity of molecular details. Contemporary biological physics requires people capable of working at this interface. New programs prepare scientists who transform respective disciplinary views into innovative approaches for solving outstanding problems in the life sciences. Copyright © 2017 Elsevier Ltd. All rights reserved.

Future directions for radiological physics: An interface with molecular biology

International Nuclear Information System (INIS)

Braby, L.A.

1987-01-01

Recent experiments with low energy x-rays and fast molecular ions have shown that the products of the interaction of several ionizations within a few nanometers dominate radiation effects. However, the authors still can only make assumptions about the physical and chemical nature of this initial damage. Enzymatic repair of DNA damage is another key factor, but they have little idea of what governs the success or failure (misrepair) of these processes. Unresolved problems like these dictate the future direction of radiological physics. Molecular biology techniques are being applied to determine molecular alterations which result in observed damage. Interpretation of these experiments will require new data on the physics of energy transfer to macromolecules and the stochastics of energy deposition in time. Future studies will attempt to identify the initial damage, before biological processes have amplified it. This will require a detailed understanding of the role of chromatin structure in governing gene expression, the transport of energy within macromolecules, the transport of ions and radicals in the semiordered environment near DNA strands, and many other physical characteristics within the living cell

Uncovering the underlying physical mechanisms of biological systems via quantification of landscape and flux

International Nuclear Information System (INIS)

Xu Li; Chu Xiakun; Yan Zhiqiang; Zheng Xiliang; Zhang Kun; Zhang Feng; Yan Han; Wu Wei; Wang Jin

2016-01-01

In this review, we explore the physical mechanisms of biological processes such as protein folding and recognition, ligand binding, and systems biology, including cell cycle, stem cell, cancer, evolution, ecology, and neural networks. Our approach is based on the landscape and flux theory for nonequilibrium dynamical systems. This theory provides a unifying principle and foundation for investigating the underlying mechanisms and physical quantification of biological systems. (topical review)

Biological mechanisms underlying the role of physical fitness in health and resilience

OpenAIRE

Silverman, Marni N.; Deuster, Patricia A.

2014-01-01

Physical fitness, achieved through regular exercise and/or spontaneous physical activity, confers resilience by inducing positive psychological and physiological benefits, blunting stress reactivity, protecting against potentially adverse behavioural and metabolic consequences of stressful events and preventing many chronic diseases. In this review, we discuss the biological mechanisms underlying the beneficial effects of physical fitness on mental and physical health. Physical fitness appear...

The Effects Of Physical And Biological Cohesion On Bedforms

Science.gov (United States)

Parsons, D. R.; Schindler, R.; Baas, J.; Hope, J. A.; Malarkey, J.; Paterson, D. M.; Peakall, J.; Manning, A. J.; Ye, L.; Aspden, R.; Alan, D.; Bass, S. J.

2014-12-01

Most coastal sediments consist of complex mixtures of cohesionless sands, physically-cohesive clays and extra cellular polymeric substances (EPS) that impart biological cohesion. Yet, our ability to predict bedform dimensions in these substrates is reliant on predictions based exclusively on cohesionless sand. We present findings from the COHBED project - which explicitly examines how bedform dynamics are modified by natural cohesion. Our experimental results show that for ripples, height and length are inversely proportional to initial clay content and bedforms take longer to appear, with no ripples when clay content exceeds 18%. When clay is replaced by EPS the development time and time of first appearance of ripples both increase by two orders of magnitude, with no bedforms above 0.125% EPS. For dunes, height and length are also inversely proportional to initial substrate clay content, resulting in a transition from dunes to ripples normally associated with velocity decreases. Addition of low EPS concentrations into the substrate results in yet smaller bedforms at the same clay contents and at high EPS concentrations, biological cohesion supersedes all electrostatic bonding, and bedform size is no longer related to mud content. The contrast in physical and biological cohesion effects on bedform development result from the disparity between inter-particle electrostatic bonding of clay particles and EPS grain coating and strands that physically link sediments together, which effects winnowing rates as bedforms evolve. These findings have wide ranging implications for bedform predictions in both modern and ancient environments. Coupling of biological and morphological processes not only requires an understanding of how bedform dimensions influence biota and habitat, but also how benthic species can modify bedform dimensions. Consideration of both aspects provides a means in which fluid dynamics, sediment transport and ecosystem energetics can be linked to yield

Scandium: its occurrence, chemistry, physics, metallurgy, biology, and technology

International Nuclear Information System (INIS)

Horovitz, C.T.

1975-01-01

This book describes the following aspects of scandium: discovery and history, occurrence in nature, geochemistry and mineralogy, chemical, physical and technological properties, fabrication and metallurgy, its biological significance and toxicology, and its uses. (Extensive references for each chapter)

DNA confinement in nanochannels: physics and biological applications

DEFF Research Database (Denmark)

Reisner, Walter; Pedersen, Jonas Nyvold; Austin, Robert H

2012-01-01

in nanochannels, creating a linear unscrolling of the genome along the channel for analysis. We will first review the fundamental physics of DNA nanochannel confinement—including the effect of varying ionic strength—and then discuss recent applications of these systems to genomic mapping. Apart from the intense...... direct assessment of the genome in its native state). In this review, we will discuss how the information contained in genomic-length single DNA molecules can be accessed via physical confinement in nanochannels. Due to self-avoidance interactions, DNA molecules will stretch out when confined...... biological interest in extracting linear sequence information from elongated DNA molecules, from a physics view these systems are fascinating as they enable probing of single-molecule conformation in environments with dimensions that intersect key physical length-scales in the 1 nm to 100μm range. (Some...

Archive of Geosample Data and Information from the Scripps Institution of Oceanography (SIO) Geological Collections

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The University of California San Diego (UCSD) Scripps Institution of Oceanography (SIO) is a partner in the Index to Marine and Lacustrine Geological Samples (IMLGS)...

Biology and physics competencies for pre-health and other life sciences students.

Science.gov (United States)

Hilborn, Robert C; Friedlander, Michael J

2013-06-01

The recent report on the Scientific Foundations for Future Physicians (SFFP) and the revised Medical College Admissions Test (MCAT) reframe the preparation for medical school (and other health professional schools) in terms of competencies: what students should know and be able to do with that knowledge, with a strong emphasis on scientific inquiry and research skills. In this article, we will describe the thinking that went into the SFFP report and what it says about scientific and quantitative reasoning, focusing on biology and physics and the overlap between those fields. We then discuss how the SFFP report set the stage for the discussion of the recommendations for the revised MCAT, which will be implemented in 2015, again focusing the discussion on biology and physics. Based on that framework, we discuss the implications for undergraduate biology and physics education if students are to be prepared to demonstrate these competencies.

Physical trajectory profile data from glider sp006 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Solomon Sea from 2015-12-14 to 2016-03-30 (NCEI Accession 0153787)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp042 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Solomon Sea from 2016-11-04 to 2017-02-23 (NCEI Accession 0161310)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp001 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Solomon Sea from 2016-08-15 to 2016-11-16 (NCEI Accession 0157002)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp001 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Solomon Sea from 2015-01-12 to 2015-04-08 (NCEI Accession 0137973)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp018 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Solomon Sea from 2014-06-10 to 2014-09-21 (NCEI Accession 0138030)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp053 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Solomon Sea from 2015-08-29 to 2015-12-13 (NCEI Accession 0145713)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp027 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Solomon Sea from 2015-06-16 to 2015-09-23 (NCEI Accession 0145712)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp018 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Solomon Sea from 2016-02-18 to 2016-05-28 (NCEI Accession 0153549)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Time in physics and biology

Directory of Open Access Journals (Sweden)

BRUNO GÜNTHER

2004-01-01

Full Text Available In contrast with classical physics, particularly with Sir Isaac Newton, where time is a continuous function, generally valid, eternally and evenly flowing as an absolute time dimension, in the biological sciences, time is in essence of cyclical nature (physiological periodicities, where future passes to past through an infinitely thin boundary, the present. In addition, the duration of the present (DP leads to the so-called 'granulation of time' in living beings, so that by the fusion of two successive pictures of the world, which are not entirely similar, they attain the perception of 'movement,' both in the real world as well as in the sham-movement in the mass media (TV.

Physical trajectory profile data from glider sp024 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Solomon Sea from 2017-01-30 to 2017-05-08 (NCEI Accession 0162888)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group. (This deployment supported by NOAA.) The National Centers for...

Physical trajectory profile data from glider sp026 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Solomon Sea from 2017-04-20 to 2017-07-31 (NCEI Accession 0164709)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group. (This deployment supported by NOAA.) The National Centers for...

Biological-based and physical-based optimization for biological evaluation of prostate patient's plans

Science.gov (United States)

Sukhikh, E.; Sheino, I.; Vertinsky, A.

2017-09-01

Modern modalities of radiation treatment therapy allow irradiation of the tumor to high dose values and irradiation of organs at risk (OARs) to low dose values at the same time. In this paper we study optimal radiation treatment plans made in Monaco system. The first aim of this study was to evaluate dosimetric features of Monaco treatment planning system using biological versus dose-based cost functions for the OARs and irradiation targets (namely tumors) when the full potential of built-in biological cost functions is utilized. The second aim was to develop criteria for the evaluation of radiation dosimetry plans for patients based on the macroscopic radiobiological criteria - TCP/NTCP. In the framework of the study four dosimetric plans were created utilizing the full extent of biological and physical cost functions using dose calculation-based treatment planning for IMRT Step-and-Shoot delivery of stereotactic body radiation therapy (SBRT) in prostate case (5 fractions per 7 Gy).

8. International Conference on Pulse Investigations in Chemistry, Biology and Physics - PULS'2008. Abstracts

International Nuclear Information System (INIS)

2008-01-01

The Report comprises abstracts of 68 communications (oral and posters) presented during the 8. International Conference on Pulse Investigations in Chemistry, Biology and Physics - PULS'2008, held on September 6 - 12, 2008 in Cracow. Presentations cover a variety of research fields representing different fields of pulse radiolysis in chemistry, biology and physics

8. International Conference on Pulse Investigations in Chemistry, Biology and Physics - PULS'2008. Abstracts

Energy Technology Data Exchange (ETDEWEB)

NONE

2008-07-01

The Report comprises abstracts of 68 communications (oral and posters) presented during the 8. International Conference on Pulse Investigations in Chemistry, Biology and Physics - PULS'2008, held on September 6 - 12, 2008 in Cracow. Presentations cover a variety of research fields representing different fields of pulse radiolysis in chemistry, biology and physics.

Bottom friction. A practical approach to modelling coastal oceanography

Science.gov (United States)

Bolanos, Rodolfo; Jensen, Palle; Kofoed-Hansen, Henrik; Tornsfeldt Sørensen, Jacob

2017-04-01

Coastal processes imply the interaction of the atmosphere, the sea, the coastline and the bottom. The spatial gradients in this area are normally large, induced by orographic and bathymetric features. Although nowadays it is possible to obtain high-resolution bathymetry, the details of the seabed, e.g. sediment type, presence of biological material and living organisms are not available. Additionally, these properties as well as bathymetry can also be highly dynamic. These bottom characteristics are very important to describe the boundary layer of currents and waves and control to a large degree the dissipation of flows. The bottom friction is thus typically a calibration parameter in numerical modelling of coastal processes. In this work, we assess this process and put it into context of other physical processes uncertainties influencing wind-waves and currents in the coastal areas. A case study in the North Sea is used, particularly the west coast of Denmark, where water depth of less than 30 m cover a wide fringe along the coast, where several offshore wind farm developments are being carried out. We use the hydrodynamic model MIKE 21 HD and the spectral wave model MIKE 21 SW to simulate atmosphere and tidal induced flows and the wind wave generation and propagation. Both models represent state of the art and have been developed for flexible meshes, ideal for coastal oceanography as they can better represent coastlines and allow a variable spatial resolution within the domain. Sensitivity tests to bottom friction formulations are carried out into context of other processes (e.g. model forcing uncertainties, wind and wave interactions, wind drag coefficient). Additionally, a map of varying bottom properties is generated based on a literature survey to explore the impact of the spatial variability. Assessment of different approaches is made in order to establish a best practice regarding bottom friction and coastal oceanographic modelling. Its contribution is also

The Pale Blue Dot: Utilizing Real World Globes in High School and Undergraduate Oceanography Classrooms

Science.gov (United States)

Rogers, D. B.

2017-12-01

Geoscience classrooms have benefitted greatly from the use of interactive, dry-erasable globes to supplement instruction on topics that require three-dimensional visualization, such as seismic wave propagation and the large-scale movements of tectonic plates. Indeed, research by Bamford (2013) demonstrates that using three-dimensional visualization to illustrate complex processes enhances student comprehension. While some geoscience courses tend to bake-in lessons on visualization, other disciplines of earth science that require three-dimensional visualization, such as oceanography, tend to rely on students' prior spatial abilities. In addition to spatial intelligence, education on the three-dimensional structure of the ocean requires knowledge of the external processes govern the behavior of the ocean, as well as the vertical and lateral distribution of water properties around the globe. Presented here are two oceanographic activities that utilize RealWorldGlobes' dry-erase globes to supplement traditional oceanography lessons on thermohaline and surface ocean circulation. While simultaneously promoting basic plotting techniques, mathematical calculations, and unit conversions, these activities touch on the processes that govern global ocean circulation, the principles of radiocarbon dating, and the various patterns exhibited by surface ocean currents. These activities challenge students to recognize inherent patterns within their data and synthesize explanations for their occurrence. Spatial visualization and critical thinking are integral to any geoscience education, and the combination of these abilities with engaging hands-on activities has the potential to greatly enhance oceanography education in both secondary and postsecondary settings

Ocean images in music compositions and folksongs

Science.gov (United States)

Liu, C. M.

2017-12-01

In general, ocean study usually ranges from physical oceanography, chemical oceanography, marine biology, marine geology, and other related fields. In addition to pure scientific fields, ocean phenomenon influence not only human mood but also the shaping of local cultures. In this paper, we present some ocean images and concepts appeared in music compositions and folksongs to show the mixing, influence and interaction between them. This may give a novel way not for science teachers but also music teachers to deliver the knowledge of ocean science in classes.

How Can We Improve Problem Solving in Undergraduate Biology? Applying Lessons from 30 Years of Physics Education Research

Science.gov (United States)

Hoskinson, A.-M.; Caballero, M. D.; Knight, J. K.

2013-01-01

If students are to successfully grapple with authentic, complex biological problems as scientists and citizens, they need practice solving such problems during their undergraduate years. Physics education researchers have investigated student problem solving for the past three decades. Although physics and biology problems differ in structure and content, the instructional purposes align closely: explaining patterns and processes in the natural world and making predictions about physical and biological systems. In this paper, we discuss how research-supported approaches developed by physics education researchers can be adopted by biologists to enhance student problem-solving skills. First, we compare the problems that biology students are typically asked to solve with authentic, complex problems. We then describe the development of research-validated physics curricula emphasizing process skills in problem solving. We show that solving authentic, complex biology problems requires many of the same skills that practicing physicists and biologists use in representing problems, seeking relationships, making predictions, and verifying or checking solutions. We assert that acquiring these skills can help biology students become competent problem solvers. Finally, we propose how biology scholars can apply lessons from physics education in their classrooms and inspire new studies in biology education research. PMID:23737623

How can we improve problem solving in undergraduate biology? Applying lessons from 30 years of physics education research.

Science.gov (United States)

Hoskinson, A-M; Caballero, M D; Knight, J K

2013-06-01

If students are to successfully grapple with authentic, complex biological problems as scientists and citizens, they need practice solving such problems during their undergraduate years. Physics education researchers have investigated student problem solving for the past three decades. Although physics and biology problems differ in structure and content, the instructional purposes align closely: explaining patterns and processes in the natural world and making predictions about physical and biological systems. In this paper, we discuss how research-supported approaches developed by physics education researchers can be adopted by biologists to enhance student problem-solving skills. First, we compare the problems that biology students are typically asked to solve with authentic, complex problems. We then describe the development of research-validated physics curricula emphasizing process skills in problem solving. We show that solving authentic, complex biology problems requires many of the same skills that practicing physicists and biologists use in representing problems, seeking relationships, making predictions, and verifying or checking solutions. We assert that acquiring these skills can help biology students become competent problem solvers. Finally, we propose how biology scholars can apply lessons from physics education in their classrooms and inspire new studies in biology education research.

Physical trajectory profile data from glider sp031 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Equatorial Pacific Ocean from 2015-09-10 to 2015-12-16 (NCEI Accession 0145667)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp053 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Equatorial Pacific Ocean from 2016-07-20 to 2016-10-20 (NCEI Accession 0156796)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp050 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Equatorial Pacific Ocean from 2016-03-30 to 2016-07-20 (NCEI Accession 0155979)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp050 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Equatorial Pacific Ocean from 2015-02-06 to 2015-05-14 (NCEI Accession 0137988)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp020 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Equatorial Pacific Ocean from 2015-12-16 to 2016-03-30 (NCEI Accession 0153550)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp020 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Equatorial Pacific Ocean from 2014-08-03 to 2014-12-12 (NCEI Accession 0137977)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp031 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Equatorial Pacific Ocean from 2014-04-12 to 2014-08-02 (NCEI Accession 0138031)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

The relative importance of physical and biological energy in landscape evolution

Science.gov (United States)

Turowski, J. M.; Schwanghart, W.

2017-12-01

Landscapes are formed by the interplay of uplift and geomorphic processes, including interacting and competing physical and biological processes. For example, roots re-inforce soil and thereby stabilize hillslopes and the canopy cover of the forest may mediate the impact of precipitation. Furthermore, plants and animals act as geomorphic agents, directly altering landscape response and dynamics by their actions: tree roots may crack rocks, thus changing subsurface water flows and exposing fresh material for denudation; fungi excrete acids that accelerate rates of chemical weathering, and burrowing animals displace soil and rocks while digging holes for shelter or in search of food. Energetically, landscapes can be viewed as open systems in which topography stores potential energy above a base level. Tectonic processes add energy to the system by uplift and mechanically altering rock properties. Especially in unvegetated regions, erosion and transport by wind can be an important geomorphic process. Advection of atmospheric moisture in high altitudes provides potential energy that is converted by water fluxes through catchments. At the same time, the conversion of solar energy through atmospheric and biological processes drives primary production of living organisms. If we accept that biota influence geomorphic processes, then what is their energetic contribution to landscape evolution relative to physical processes? Using two case studies, we demonstrate that all components of energy input are negligible apart from biological production, quantified by net primary productivity (NPP) and potential energy conversion by water that is placed high up in the landscape as rainfall and leaves it as runoff. Assuming that the former is representative for biological energy and the latter for physical energy, we propose that the ratio of these two values can be used as a proxy for the relative importance of biological and physical processes in landscape evolution. All necessary

Robustness: confronting lessons from physics and biology.

Science.gov (United States)

Lesne, Annick

2008-11-01

The term robustness is encountered in very different scientific fields, from engineering and control theory to dynamical systems to biology. The main question addressed herein is whether the notion of robustness and its correlates (stability, resilience, self-organisation) developed in physics are relevant to biology, or whether specific extensions and novel frameworks are required to account for the robustness properties of living systems. To clarify this issue, the different meanings covered by this unique term are discussed; it is argued that they crucially depend on the kind of perturbations that a robust system should by definition withstand. Possible mechanisms underlying robust behaviours are examined, either encountered in all natural systems (symmetries, conservation laws, dynamic stability) or specific to biological systems (feedbacks and regulatory networks). Special attention is devoted to the (sometimes counterintuitive) interrelations between robustness and noise. A distinction between dynamic selection and natural selection in the establishment of a robust behaviour is underlined. It is finally argued that nested notions of robustness, relevant to different time scales and different levels of organisation, allow one to reconcile the seemingly contradictory requirements for robustness and adaptability in living systems.

The ARMADA Project: Bringing Oceanography and the Arctic to the Midwest

Science.gov (United States)

Pazol, J.

2010-12-01

In the fall of 2009, I spent 6 weeks aboard the Coast Guard Icebreaker Healy on a mapping expedition in the Arctic Ocean, through participation in the University of Rhode Island's ARMADA Project. Because I grew up in the Midwest, went to college here, and teach in the Chicago suburbs, I had limited first-hand experience in oceanography, as did most of my students. During my time aboard the ship, I primarily served as a member of the mapping team, collecting bathymetric and seismic data. My other science activities included aiding geologists and acoustic engineers in dredging projects and deployment of under-ice recording devices. I collected water data, sent off weather balloons, and assisted marine mammal observers. For the ARMADA Project I kept an on-line journal, which had a far-reaching impact. Students in many schools kept track of my activities and communicated with me via e-mail. Colleagues and friends shared the journal through other media, such as Facebook. Several of my entries were published in blogs belonging to NOAA and the USGS. I received a grant for renting a satellite phone, and through it was able to make "Live from the Arctic" phone calls. After introductory PowerPoints I communicated with more than 420 students in 5 schools in 3 states. When I returned, I made a series of presentations about the Arctic and my adventures to hundreds of people and was featured in an educational magazine with a circulation of more than 90,000. I also participated in an in-depth mentoring program with a new teacher to help her succeed during the first years of her career. The results: My students and I now have a direct connection to the Arctic and to the fields of oceanography, acoustic engineering, and geology. On their own initiative, students have developed individual projects exploring aspects of my research. They have attended presentations from the Extreme Ice Center and have become involved in drilling issues in the Chukchi Sea. A group of students is

Influence of different natural physical fields on biological processes

Science.gov (United States)

Mashinsky, A. L.

2001-01-01

In space flight conditions gravity, magnetic, and electrical fields as well as ionizing radiation change both in size, and in direction. This causes disruptions in the conduct of some physical processes, chemical reactions, and metabolism in living organisms. In these conditions organisms of different phylogenetic level change their metabolic reactions undergo changes such as disturbances in ionic exchange both in lower and in higher plants, changes in cell morphology for example, gyrosity in Proteus ( Proteus vulgaris), spatial disorientation in coleoptiles of Wheat ( Triticum aestivum) and Pea ( Pisum sativum) seedlings, mutational changes in Crepis ( Crepis capillaris) and Arabidopsis ( Arabidopsis thaliana) seedling. It has been found that even in the absence of gravity, gravireceptors determining spatial orientation in higher plants under terrestrial conditions are formed in the course of ontogenesis. Under weightlessness this system does not function and spatial orientation is determined by the light flux gradient or by the action of some other factors. Peculiarities of the formation of the gravireceptor apparatus in higher plants, amphibians, fish, and birds under space flight conditions have been observed. It has been found that the system in which responses were accompanied by phase transition have proven to be gravity-sensitive under microgravity conditions. Such reactions include also the process of photosynthesis which is the main energy production process in plants. In view of the established effects of microgravity and different natural physical fields on biological processes, it has been shown that these processes change due to the absence of initially rigid determination. The established biological effect of physical fields influence on biological processes in organisms is the starting point for elucidating the role of gravity and evolutionary development of various organisms on Earth.

Physical trajectory profile data from glider sp028 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-08-17 to 2016-09-16 (NCEI Accession 0156601)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp025 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2014-11-25 to 2014-11-27 (NCEI Accession 0137979)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp039 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-02-18 to 2016-09-06 (NCEI Accession 0156570)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp028 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2015-11-24 to 2016-03-10 (NCEI Accession 0145666)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp028 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-06-28 to 2016-08-23 (NCEI Accession 0156400)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp025 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2015-08-13 to 2015-11-18 (NCEI Accession 0145665)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp025 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2014-06-11 to 2014-09-15 (NCEI Accession 0137978)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp011 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-06-02 to 2016-09-06 (NCEI Accession 0156569)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp041 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-09-08 to 2016-12-14 (NCEI Accession 0157607)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp052 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2015-07-28 to 2016-02-18 (NCEI Accession 0145670)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp064 deployed by University of California - San Diego; Scripps Institution of Oceanography in the |Coastal Waters of California from 2016-12-14 to 2017-03-29 (NCEI Accession 0162258)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp028 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-12-14 to 2017-03-28 (NCEI Accession 0162257)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp054 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-03-17 to 2016-10-11 (NCEI Accession 0156772)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp030 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-02-18 to 2016-06-02 (NCEI Accession 0153551)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp052 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-09-06 to 2017-03-14 (NCEI Accession 0162198)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp030 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-09-06 to 2016-11-30 (NCEI Accession 0157115)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp011 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2015-11-05 to 2016-02-18 (NCEI Accession 0145664)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp025 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-03-10 to 2016-06-28 (NCEI Accession 0155280)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp064 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-05-17 to 2016-08-23 (NCEI Accession 0156410)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp064 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2015-10-30 to 2016-02-03 (NCEI Accession 0145715)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp025 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-09-13 to 2016-12-14 (NCEI Accession 0157580)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp039 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2015-01-22 to 2015-07-16 (NCEI Accession 0138033)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp030 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2015-01-09 to 2015-04-27 (NCEI Accession 0137984)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp035 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2015-03-31 to 2015-07-16 (NCEI Accession 0138032)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp011 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2014-05-01 to 2014-08-13 (NCEI Accession 0137974)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp063 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-02-03 to 2016-05-17 (NCEI Accession 0153552)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp063 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2014-09-15 to 2014-11-04 (NCEI Accession 0137991)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp052 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2014-08-14 to 2015-01-09 (NCEI Accession 0137990)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp011 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-11-30 to 2017-03-14 (NCEI Accession 0162197)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp028 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2014-06-05 to 2014-09-05 (NCEI Accession 0137981)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp047 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2015-08-27 to 2016-03-17 (NCEI Accession 0145668)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp011 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2014-09-23 to 2015-01-09 (NCEI Accession 0137975)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp063 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-08-23 to 2016-08-28 (NCEI Accession 0156530)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp011 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2015-04-27 to 2015-08-13 (NCEI Accession 0137976)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp030 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2014-08-13 to 2014-11-25 (NCEI Accession 0137983)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp040 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2015-04-09 to 2015-07-14 (NCEI Accession 0138034)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp051 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2014-11-12 to 2015-01-08 (NCEI Accession 0137989)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp048 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2015-01-27 to 2015-08-27 (NCEI Accession 0145669)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp025 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2015-01-08 to 2015-04-09 (NCEI Accession 0137980)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp048 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2014-01-16 to 2014-07-29 (NCEI Accession 0138035)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp047 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2014-06-23 to 2015-01-22 (NCEI Accession 0137987)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

Physical trajectory profile data from glider sp049 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2016-04-05 to 2016-06-02 (NCEI Accession 0153788)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group (supported by NOAA). The National Centers for Environmental...

In the Footsteps of Roger Revelle: A STEM Partnership Between Scripps Institution of Oceanography, Office of Naval Research and Middle School Science Students Bringing Next Generation Science Standards into the Classroom through Ocean Science

Science.gov (United States)

Brice, D.; Appelgate, B., Jr.; Mauricio, P.

2014-12-01

Now in its tenth year, "In the Footsteps of Roger Revelle" (IFRR) is a middle school science education program that draws student interest, scientific content and coherence with Next Generation Science Standards from real-time research at sea in fields of physical science. As a successful collaboration involving Scripps Institution of Oceanography (SIO),Office of Naval Research (ONR), and San Marcos Middle School (SMMS), IFRR brings physical oceanography and related sciences to students at the San Marcos Middle School in real-time from research vessels at sea using SIO's HiSeasNet satellite communication system. With a generous grant from ONR, students are able to tour the SIO Ships and spend a day at sea doing real oceanographic data collection and labs. Through real-time and near-realtime broadcasts and webcasts, students are able to share data with scientists and gain an appreciation for the value of Biogeochemical research in the field as it relates to their classroom studies. Interaction with scientists and researchers as well as crew members gives students insights into not only possible career paths, but the vital importance of cutting edge oceanographic research on our society. With their science teacher on the ship as an education outreach specialist or ashore guiding students in their interactions with selected scientists at sea, students observe shipboard research being carried out live via videoconference, Skype, daily e-mails, interviews, digital whiteboard sessions, and web interaction. Students then research, design, develop, deploy, and field-test their own data-collecting physical oceanography instruments in their classroom. The online interactive curriculum models the Next Generation Science Standards encouraging active inquiry and critical thinking with intellectually stimulating problem- solving, enabling students to gain critical insight and skill while investigating some of the most provocative questions of our time, and seeing scientists as

Research on condensed matter and atomic physics using major experimental facilities and devices: Physics, chemistry, biology. Reports on results. Vol. 3. 4. Chemistry. 5. Biology. 6. Development of methods and instruments

International Nuclear Information System (INIS)

1993-01-01

This report in three volumes substantiates the contents of the programme survey published in September 1989. The progress reports cover the following research areas: Vol. I, (1). Atomic and molecular physics - free atoms, molecules, macromolecules, clusters, matrix-isolated atoms and molecules. (2) Physics and chemistry of surfaces and interfaces - epitaxy, surface structure, adsorption, electrical, magnetic, and optical properties, thin films, synthetic layer structure. Vol. II, (3). Solid-state physics, and materials science -structural research, lattice dynamics, magnetic structure and dynamics, electronic states; load; spin and pulse density fluctuations; diffusion and internal motion, defects, unordered systems and liquids. Vol. III, (4). Chemistry - bonding and structure, kinetics and reaction mechanisms, polymer research, analysis and synthesis. (5). Biology, - structure and dynamics of biological macromolecules, membrane and cell biology. (6) Development of methods and instruments - neutron sources, synchrotron sources, special accelerators, research with interlinked systems and devices. (orig.) [de

1960-69 Cumulative Index of Articles Related to Oceanography and Limnology Education in The Science Teacher.

Science.gov (United States)

Cohen, Maxwell

Indexed are articles relating to oceanography and limnology published in "The Science Teacher" between 1960 and 1969. Articles are indexed under title, author, and topic. Topics include background information, course descriptions, and laboratory equipment and techniques. (EB)

Russian science readings (chemistry, physics, biology)

CERN Document Server

Light, L

1949-01-01

Some years' experience in teaching Russian to working scientists who had already acquired the rudiments of the grammar convinced me of the need for a reader of the present type that would smooth the path of those wishing to study Russian scientific literature in the original. Although the subject matter comprises what I have described for convenience as chemistry, physics and biology, it could be read with equal profit by those engaged in any branch of pure or applied science. All the passages are taken from school textbooks, and acknowledgements are due to the authors of the works listed at the foot of the contents page.

Physical trajectory profile data from glider sp055 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2017-03-14 to 2017-06-28 (NCEI Accession 0163867)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group. (This deployment supported by NOAA.) The National Centers for...

Physical trajectory profile data from glider sp030 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2017-04-05 to 2017-07-11 (NCEI Accession 0164208)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group. (This deployment supported by NOAA.) The National Centers for...

Physical trajectory profile data from glider sp025 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2017-03-28 to 2017-07-11 (NCEI Accession 0164207)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group. (This deployment supported by NOAA.) The National Centers for...

Physical trajectory profile data from glider sp049 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2017-05-18 to 2017-08-24 (NCEI Accession 0165396)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group. (This deployment supported by NOAA.) The National Centers for...

Physical trajectory profile data from glider sp056 deployed by University of California - San Diego; Scripps Institution of Oceanography in the Coastal Waters of California from 2017-03-29 to 2017-07-01 (NCEI Accession 0164292)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Spray glider profile data from Scripps Institution of Oceanography Instrument Development Group. (This deployment supported by NOAA.) The National Centers for...

Designing and testing a classroom curriculum to teach preschoolers about the biology of physical activity: The respiration system as an underlying biological causal mechanism

Science.gov (United States)

Ewing, Tracy S.

The present study examined young children's understanding of respiration and oxygen as a source of vital energy underlying physical activity. Specifically, the purpose of the study was to explore whether a coherent biological theory, characterized by an understanding that bodily parts (heart and lungs) and processes (oxygen in respiration) as part of a biological system, can be taught as a foundational concept to reason about physical activity. The effects of a biology-based intervention curriculum designed to teach preschool children about bodily functions as a part of the respiratory system, the role of oxygen as a vital substance and how physical activity acts an energy source were examined. Participants were recruited from three private preschool classrooms (two treatment; 1 control) in Southern California and included a total of 48 four-year-old children (30 treatment; 18 control). Findings from this study suggested that young children could be taught relevant biological concepts about the role of oxygen in respiratory processes. Children who received biology-based intervention curriculum made significant gains in their understanding of the biology of respiration, identification of physical and sedentary activities. In addition these children demonstrated that coherence of conceptual knowledge was correlated with improved accuracy at activity identification and reasoning about the inner workings of the body contributing to endurance. Findings from this study provided evidence to support the benefits of providing age appropriate but complex coherent biological instruction to children in early childhood settings.

Radiation physics, biophysics, and radiation biology

International Nuclear Information System (INIS)

Hall, E.J.; Zaider, M.

1993-05-01

Research at the Center for Radiological Research is a multidisciplenary blend of physics, chemistry and biology aimed at understanding the mechanisms involved in the health problems resulting from human exposure to ionizing radiations. The focus is increased on biochemistry and the application of the techniques of molecular biology to the problems of radiation biology. Research highlights of the program from the past year are described. A mathematical model describing the production of single-strand and double-strand breaks in DNA as a function radiation quality has been completed. For the first time Monte Carlo techniques have been used to obtain directly the spatial distribution of DNA moieties altered by radiation. This information was obtained by including the transport codes a realistic description of the electronic structure of DNA. We have investigated structure activity relationships for the potential oncogenicity of a new generation of bioreductive drugs that function as hypoxic cytotoxins. Experimental and theoretical investigation of the inverse dose rate effect, whereby medium LET radiations actually produce an c effect when the dose is protracted, is now at a point where the basic mechanisms are reasonably understood and the complex interplay between dose, dose rate and radiation quality which is necessary for the effect to be present can now be predicted at least in vitro. In terms of early radiobiological damage, a quantitative link has been established between basic energy deposition and locally multiply damaged sites, the radiochemical precursor of DNA double strand breaks; specifically, the spatial and energy deposition requirements necessary to form LMDs have been evaluated. For the first time, a mechanically understood ''biological fingerprint'' of high-LET radiation has been established. Specifically measurement of the ratio of inter-to intra-chromosomal aberrations produces a unique signature from alpha-particles or neutrons

Radiation physics, biophysics, and radiation biology

Energy Technology Data Exchange (ETDEWEB)

Hall, E.J.; Zaider, M.

1993-05-01

Research at the Center for Radiological Research is a multidisciplenary blend of physics, chemistry and biology aimed at understanding the mechanisms involved in the health problems resulting from human exposure to ionizing radiations. The focus is increased on biochemistry and the application of the techniques of molecular biology to the problems of radiation biology. Research highlights of the program from the past year are described. A mathematical model describing the production of single-strand and double-strand breaks in DNA as a function radiation quality has been completed. For the first time Monte Carlo techniques have been used to obtain directly the spatial distribution of DNA moieties altered by radiation. This information was obtained by including the transport codes a realistic description of the electronic structure of DNA. We have investigated structure activity relationships for the potential oncogenicity of a new generation of bioreductive drugs that function as hypoxic cytotoxins. Experimental and theoretical investigation of the inverse dose rate effect, whereby medium LET radiations actually produce an c effect when the dose is protracted, is now at a point where the basic mechanisms are reasonably understood and the complex interplay between dose, dose rate and radiation quality which is necessary for the effect to be present can now be predicted at least in vitro. In terms of early radiobiological damage, a quantitative link has been established between basic energy deposition and locally multiply damaged sites, the radiochemical precursor of DNA double strand breaks; specifically, the spatial and energy deposition requirements necessary to form LMDs have been evaluated. For the first time, a mechanically understood biological fingerprint'' of high-LET radiation has been established. Specifically measurement of the ratio of inter-to intra-chromosomal aberrations produces a unique signature from alpha-particles or neutrons.

Sailing for Science: on board experiences for transferring knowledge on Historical Oceanography for Future Innovation

Science.gov (United States)

Garvani, Sara; Carmisciano, Cosmo; Locritani, Marina; Grossi, Luigi; Mori, Anna; Stroobant, Mascha; Schierano, Erika; De Strobel, Federico; Manzella, Giuseppe; Muzi, Enrico; Leccese, Dario; Sinapi, Luigi; Morellato, Claudio; La Tassa, Hebert; Talamoni, Roberta; Coelho, Emanuel; Nacini, Francesca

2017-04-01

Smart, sustainable and inclusive Blue Growth means also knowing past technology and the paths followed by ancients in order to understand and monitor marine environments. In general, history of Science is a matter that is not enough explored and explained or promoted in high schools or university official programmes, and, usually, scientist do not consider it as an important part of their curricula. However, bad or good ideas, abandoned or forgotten beliefs, concepts, opinions, do still have a great potential for inspiring present and future scientists, no matter in which historical period they may have been formulated: they should be always be taken into consideration, critically examined and observed by a very close point of view, not just as part of the intellectual framework of some obsolete 'Cabinet of Curiosities' with limited access except for the chosen few. Moreover, history of Science should be transmitted in a more practical way, with hands-on labs showing the limits and challenges that prior generations of ocean explorers, investigators and seafarers had to face in order to answer to crucial questions as self-orientation in open sea, understanding main currents and waves, predicting meteorological conditions for a safe navigation. Oceanography is a relatively young branch of science, and still needs further approvals and knowledge (National Science Foundation, 2000). The Scientific Dissemination Group (SDG) "La Spezia Gulf of Science" - made up by Research Centres, Schools and Cultural associations located in La Spezia (Liguria, Italy) - has a decadal experience in initiatives aimed at people and groups of people of all ages, who are keen on science or who can be guided in any case to take an interest in scientific matters (Locritani et al., 2015). Amongst the SDG activities, the tight relationship with the Historical Oceanography Society, the Italian Navy and the Naval Technical Museum (that collects a rich heritage of civilization, technology and

Physical Activity: A Tool for Improving Health (Part 1--Biological Health Benefits)

Science.gov (United States)

Gallaway, Patrick J.; Hongu, Nobuko

2015-01-01

Extension educators have been promoting and incorporating physical activities into their community-based programs and improving the health of individuals, particularly those with limited resources. This article is the first of a three-part series describing the benefits of physical activity for human health: 1) biological health benefits of…

The Gravity of Regenerative Medicine; Physics, Chemistry & Biology behind it

Directory of Open Access Journals (Sweden)

Dedeepiya V

2008-01-01

Full Text Available The in-vitro expansion of cells of the organs/tissues and their re-implantation into the affected region/ tissue for treating cell/organ failure have been in practice for long, but in limited specialties. The in-vitro cell culture protocols use variety of biological reagents derived from animal sources and recombinant technologies. However, the optimal quantity of such biological components such as growth factors, cytokines etc.,needed for such cells to be grown in a non-physiological environment is still unknown. The use of such biological components have started to stir a controversy of late, due to the recognition of its potential hazards such as spread of prion diseases and contamination with non-human sialic acid proteins. Therefore synthetic reproducible biomaterials are gaining popularity in cell culture and tissue engineering. The biomaterials made of several chemical components based on physical parameters are starting to change certain concepts about the niche of cell culture and that of stem cell expansion and differentiation to specific lineages. Engler et al have already proven that a simple change in the matrix elasticity alone could change the lineage of the cells. Spencer et al have reported that a change in bioelectricity could change the morphogenesis during development. NCRM has been involved in cell culture and tissue engineering using approximately 240 different materials ranging from polymer hydrogel, gel with adherent inserts, nano composite materials, nano-coating technologies, nano-sheets and nano-films. These materials are used in cell culture in different hybrid combinations such as Floating 3D cell culture without adherent components in a homogenous hydrogel. Floating 3D cell culture with anchorage inserts. Flat surface- 2D adherent cell culture. Combined flat surface 2D cell culture (for differentiating cells and floating 3D culture (for undifferentiated cells. These combinations have started yielding several

Charge Migration in DNA Perspectives from Physics, Chemistry, and Biology

CERN Document Server

Chakraborty, Tapash

2007-01-01

Charge migration through DNA has been the focus of considerable interest in recent years. A deeper understanding of the nature of charge transfer and transport along the double helix is important in fields as diverse as physics, chemistry and nanotechnology. It has also important implications in biology, in particular in DNA damage and repair. This book presents contributions from an international team of researchers active in this field. It contains a wide range of topics that includes the mathematical background of the quantum processes involved, the role of charge transfer in DNA radiation damage, a new approach to DNA sequencing, DNA photonics, and many others. This book should be of value to researchers in condensed matter physics, chemical physics, physical chemistry, and nanoscale sciences.

Computer Programs in Marine Science: Key to Oceanographic Records Documentation No. 5.

Science.gov (United States)

Firestone, Mary A.

Presented are abstracts of 700 computer programs in marine science. The programs listed are categorized under a wide range of headings which include physical oceanography, chemistry, coastal and estuarine processes, biology, pollution, air-sea interaction and heat budget, navigation and charting, curve fitting, and applied mathematics. The…

Surface treatments for biological, chemical and physical applications

CERN Document Server

Karaman, Mustafa

2017-01-01

A step-by-step guide to the topic with a mix of theory and practice in the fields of biology, chemistry and physics. Straightforward and well-structured, the first chapter introduces fundamental aspects of surface treatments, after which examples from nature are given. Subsequent chapters discuss various methods to surface modification, including chemical and physical approaches, followed by the characterization of the functionalized surfaces. Applications discussed include the lotus effect, diffusion barriers, enzyme immobilization and catalysis. Finally, the book concludes with a look at future technology advances. Throughout the text, tutorials and case studies are used for training purposes to grant a deeper understanding of the topic, resulting in an essential reference for students as well as for experienced engineers in R&D.

Physical limits of feedback noise-suppression in biological networks

International Nuclear Information System (INIS)

Zhang, Jiajun; Yuan, Zhanjiang; Zhou, Tianshou

2009-01-01

Feedback is a ubiquitous control mechanism of biological networks, and has also been identified in a variety of regulatory systems and organisms. It has been shown that, for a given gain and with negligible intrinsic noise, negative feedback impairs noise buffering whereas positive feedback enhances noise buffering. We further investigate the influence of negative and positive feedback on noise in output signals by considering both intrinsic and extrinsic noise as well as operator noise. We find that, while maintaining the system sensitivity, either there exists a minimum of the output noise intensity corresponding to a biologically feasible feedback strength, or the output noise intensity is a monotonic function of feedback strength bounded by both biological and dynamical constraints. In both cases, feedback noise-suppression is physically limited. In other words, noise suppressed by negative or positive feedback cannot be reduced without limitation even in the case of slow transcription

Physical basis for biological effect

International Nuclear Information System (INIS)

Goodhead, D.T.

1987-01-01

Absorbed dose, or particle fluence, alone, are poor predictors of the biological effectiveness of ionizing radiations. Various radiation 'quality' parameters have been proposed to account quantitatively for the differences due to type of radiation. These include LET, quality factor (Q), lineal energy, specific energy and Z 2 /β 2 . However, all of these have major shortcomings, largely because they fail to describe adequately the microscopic stochastic properties of radiation which are primarily responsible for their relative effectiveness. Most biophysical models of radiation action now agree that the biological effectiveness of radiations are to a large extent determined by their very localized spatial properties of energy deposition (perhaps DNA and associated structures) and that the probability of residual permanent cellular damage (after cellular repair) depends on the nature of this initial macromolecular damage. Common features of these models make it clear that major future advances in identifying critical physical parameters of radiations for general practical application, or to describe their fundamental mechanisms of action, require accurate knowledge of the spatial patterns of energy deposition down to distances of the order of nanometres. Therefore, adequate descriptions are required of the nature and spatial distribution of the initial charged particles and of the interaction-by-interaction structure of the ensuing charged particle tracks. Recent development and application of Monte Carlo track structure simulations have already made it possible to commence such analyses of radiobiological data. (author). 56 refs, 7 figs

From Molecules to Living Organisms : an Interplay between Biology and Physics : Lecture Notes of the Les Houches School of Physics

CERN Document Server

Nury, Hughes; Parcy, François; Ruigrok, Rob W H; Ziegler, Christine; Cugliandolo, Leticia F; Session CII

2016-01-01

The aim of this book is to provide new ideas for studying living matter by a simultaneous understanding of behavior from molecules to the cell, to the whole organism in the light of physical concepts. Indeed, forces guide most biological phenomena. In some cases these forces can be well-described and thus used to model a particular biological phenomenon. This is exemplified here by the study of membranes, where their shapes and curvatures can be modeled using a limited number of parameters that are measured experimentally. The growth of plants is another example where the combination of physics, biology and mathematics leads to a predictive model. The laws of thermodynamics are essential, as they dictate the behavior of proteins, or more generally biological molecules, in an aqueous environment. Integrated studies from the molecule to a larger scale need a combination of cutting-edge approaches, such as the use of new X-ray sources, in-cell NMR, cryo-electron microscopy or single-molecule microscopy. Some are...

Milkweed Seed Dispersal: A Means for Integrating Biology and Physics.

Science.gov (United States)

Bisbee, Gregory D.; Kaiser, Cheryl A.

1997-01-01

Describes an activity that integrates biology and physics concepts by experimenting with the seed dispersal of common milkweed or similar wind-dispersed seeds. Student teams collect seeds and measure several parameters, review principles of trajectory motion, perform experiments, and graph data. Students examine the ideas of…

Essential concepts and underlying theories from physics, chemistry, and mathematics for "biochemistry and molecular biology" majors.

Science.gov (United States)

Wright, Ann; Provost, Joseph; Roecklein-Canfield, Jennifer A; Bell, Ellis

2013-01-01

Over the past two years, through an NSF RCN UBE grant, the ASBMB has held regional workshops for faculty members from around the country. The workshops have focused on developing lists of Core Principles or Foundational Concepts in Biochemistry and Molecular Biology, a list of foundational skills, and foundational concepts from Physics, Chemistry, and Mathematics that all Biochemistry or Molecular Biology majors must understand to complete their major coursework. The allied fields working group created a survey to validate foundational concepts from Physics, Chemistry, and Mathematics identified from participant feedback at various workshops. One-hundred twenty participants responded to the survey and 68% of the respondents answered yes to the question: "We have identified the following as the core concepts and underlying theories from Physics, Chemistry, and Mathematics that Biochemistry majors or Molecular Biology majors need to understand after they complete their major courses: 1) mechanical concepts from Physics, 2) energy and thermodynamic concepts from Physics, 3) critical concepts of structure from chemistry, 4) critical concepts of reactions from Chemistry, and 5) essential Mathematics. In your opinion, is the above list complete?" Respondents also delineated subcategories they felt should be included in these broad categories. From the results of the survey and this analysis the allied fields working group constructed a consensus list of allied fields concepts, which will help inform Biochemistry and Molecular Biology educators when considering the ASBMB recommended curriculum for Biochemistry or Molecular Biology majors and in the development of appropriate assessment tools to gauge student understanding of how these concepts relate to biochemistry and molecular biology. © 2013 by The International Union of Biochemistry and Molecular Biology.

[Chemical, physical and biological risks in law enforcement].

Science.gov (United States)

Magrini, Andrea; Grana, Mario; Vicentini, Laura

2014-01-01

Chemical, physical and biological risks among public safety and security forces. Law enforcement personnel, involved in routine tasks and in emergency situations, are exposed to numerous and several occupational hazards (chemical, physical and biological) whith likely health and security consequences. These risks are particularly high when the organization and preparation are inadequate, there is a lacking or insufficient coordination, information, education and communication and safety and personal protective equipment are inadequate or insufficient. Despite the objective difficulties, caused by the actual special needs related to the service performed or the organizational peculiarities, the risk identification and assessment is essential for worker health and safety of personnel, as provided for by Legislative Decree no. 81/2008. Chemical risks include airborne pollutants due to vehicular traffic (carbon monoxide, ultrafine particles, benzene, polycyclic aromatic hydrocarbons, aldehydes, nitrogen and sulfur oxides, lead), toxic gases generated by combustion process following fires (aromatic hydrocarbons, PAHs, dioxins and furans, biphenyls, formaldehyde, metals and cyanides), substances emitted in case of chemical accidents (solvents, pesticides, toxic gases, caustics), drugs (methylamphetamine), riot control agents and self-defence spray, lead at firing ranges, and several materials and reagents used in forensic laboratory. The physical hazards are often caused by activities that induce biomechanical overload aid the onset of musculoskeletal disorders, the use of visual display terminals and work environments that may expose to heat stress and discomfort, high and low pressure, noise, vibrations, ionizing and non-ionizing radiation. The main biological risks are blood-borne diseases (viral hepatitis, AIDS), airborne diseases (eg, tuberculosis, meningitis, SARS, anthrax), MRSA, and vector-borne diseases. Many of these risk factors are unavoidable or are not

How biological (fish) noise affects the performance of shallow water passive array system

Digital Repository Service at National Institute of Oceanography (India)

Fernandes, W.A.; Chakraborty, B.; Haris, K.; Vijayakumar, K.; Sundar, D.; Luis, R.A.A.; Mahanty, M.M.; Latha, G.

=UTF-8 How biological (fish) noise affects the performance of shallow water passive array system William Fernandes, Bishwajit Chakraborty, K. Haris, K. Vijaykumar, D. Sundar, R.A.A. Luis CSIR-National Institute of Oceanography, Dona Paula... source distribution as well as the environmental parameters (i.e., water depth, sound speed profile, and seafloor properties). In a waveguide bounded by sea surface and seabed, multipath propagation prevails and the spatial structure of the noise...

The oceanography programme of the Federal German Government

International Nuclear Information System (INIS)

1993-01-01

The oceanography programme of the Federal German Government has the following general aims: 1. To lay the foundation for better understanding of the role of the ocean as a climate factor and repercussions on the ocean from climate change as a basis for future preventive and protective action. 2. Identification of natural and anthropogenous factors of stress to the coastal seas, the coastal regions and the open ocean, research into their dynamics and impact, and development of bases, methods and concepts for describing and evaluating the condition of the coastal seas, coastal regions and open ocean and for projecting and/or remedying relative changes. 3. Development of methods and techniques for climate and environment-related research into and monitoring of the oceans and for careful exploitation of living and non-living resources. (orig.) [de

Integration of physics and biology: synergistic undergraduate education for the 21st century.

Science.gov (United States)

Woodin, Terry; Vasaly, Helen; McBride, Duncan; White, Gary

2013-06-01

This is an exciting time to be a biologist. The advances in our field and the many opportunities to expand our horizons through interaction with other disciplines are intellectually stimulating. This is as true for people tasked with helping the field move forward through support of research and education projects that serve the nation's needs as for those carrying out that research and educating the next generation of biologists. So, it is a pleasure to contribute to this edition of CBE-Life Sciences Education. This column will cover three aspects of the interactions of physics and biology as seen from the viewpoint of four members of the Division of Undergraduate Education of the National Science Foundation. The first section places the material to follow in context. The second reviews some of the many interdisciplinary physics-biology projects we support. The third highlights mechanisms available for supporting new physics-biology undergraduate education projects based on ideas that arise, focusing on those needing and warranting outside support to come to fruition.

Biological Physics : Poincaré seminar

CERN Document Server

Bio-physique : séminaire Poincaré

2011-01-01

This new volume in the Poincaré Seminar Series, describing recent developments at the interface between physics and biology, is directed towards a broad audience of physicists, biologists, and mathematicians. Both the theoretical and experimental aspects are covered, and particular care is devoted to the pedagogical nature of the presentations. The first survey article, by Jean-Francois Joanny and Jacques Prost, describes the theoretical advances made in the study of "active gels", with applications to liquid crystals and cell motility. Jasper van der Gucht and Cécile Sykes then report on recent advances made with biomimetic model systems in the understanding of cytokinesis. The next article, by Jonathon Howard, presents several molecular models for motor proteins, which are compared with experimental results for kinesin. David Lacoste and Kirone Mallick then show theoretically that similar ratchet models of motor proteins naturally satisfy a fundamental time-reversal symmetry, the Gallavotti-Cohen fluctuat...

A generic framework for individual-based modelling and physical-biological interaction

DEFF Research Database (Denmark)

Christensen, Asbjørn; Mariani, Patrizio; Payne, Mark R.

2018-01-01

The increased availability of high-resolution ocean data globally has enabled more detailed analyses of physical-biological interactions and their consequences to the ecosystem. We present IBMlib, which is a versatile, portable and computationally effective framework for conducting Lagrangian...... scales. The open-source framework features a minimal robust interface to facilitate the coupling between individual-level biological models and oceanographic models, and we provide application examples including forward/backward simulations, habitat connectivity calculations, assessing ocean conditions...

Introduction to solitons and their applications in physics and biology

International Nuclear Information System (INIS)

Peyrard, M.

1995-01-01

The response of most of the physical systems to combined excitations is not a simple superposition of their response to individual stimuli. This is particularly true for biological systems in which the nonlinear effects are often the dominant ones. The intrinsic treatment of nonlinearities in mathematical models and physical systems has led to the emergence of the chaos and solitons concepts. The concept of soliton, relevant for systems with many degrees of freedom, provides a new tool in the studies of biomolecules because it has no equivalent in the world of linear excitations. The aim of this lecture is to present the main ideas that underline the soliton concept and to discuss some applications. Solitons are solitary waves, that propagate at constant speed without changing their shape. They are extremely stable to perturbations, in particular to collisions with small amplitude linear waves and with other solitons. Conditions to have solitons and equations of solitons propagation are analysed. Solitons can be divided into two main classes: topological and non-topological solitons which can be found at all scales and in various domains of physics and chemistry. Using simple examples, this paper shows how linear expansions can miss completely essential physical properties of a system. This is particularly characteristic for the pendulum chain example. Soliton theory offers alternative methods. Multiple scale approximations, or expansion on a soliton basis, can be very useful to provide a description of some physical phenomena. Nonlinear energy localization is also a very important concept valid for a large variety of systems. These concepts are probably even more relevant for biological molecules than for solid state physics, because these molecules are very deformable objects where large amplitude nonlinear motions or conformational changes are crucial for function. (J.S.). 14 refs., 9 figs

CSIR ScienceScope: Space science & technology in CSIR

CSIR Research Space (South Africa)

CSIR

2008-10-01

Full Text Available biology and carbon fluxes.” Bernard says his interest in water em- anates from all the time he spent in the water as a boy, growing up near Lake Malawi. He obtained his BSc in oceanography and physics at the University of Southampton in the United... not only re- lies on earth observation data, but em- braces chemistry, physics, biology and mathematics by transcending disciplinary boundaries to treat the earth as an inte- grated system. The observation and com- putationally intensive coupled...

Proceedings of the fifth annual NEA-seabed working group meeting

International Nuclear Information System (INIS)

Anderson, D.R.

1980-09-01

European Communities, the Federal Republic of Germany, France, Japan, Netherlands, Switzerland, the United Kingdom, and the United States on national policies and positions on seabed disposal are summarized. Task group reports on systems analysis, site assessment, canisters, waste forms, sediment and rocks, physical oceanography, and biology are presented

Proceedings of the fifth annual NEA-seabed working group meeting

Energy Technology Data Exchange (ETDEWEB)

Anderson, D. R. [ed.

1980-09-01

European Communities, the Federal Republic of Germany, France, Japan, Netherlands, Switzerland, the United Kingdom, and the United States on national policies and positions on seabed disposal are summarized. Task group reports on systems analysis, site assessment, canisters, waste forms, sediment and rocks, physical oceanography, and biology are presented. (DMC)

After the Greeting: Realizing the Potential of Physical Models in Cell Biology.

Science.gov (United States)

Paluch, Ewa K

2015-12-01

Biophysics is increasingly taking center stage in cell biology as the tools for precise quantifications of cellular behaviors expand. Interdisciplinary approaches, combining quantitative physical modeling with cell biology, are of growing interest to journal editors, funding agencies, and hiring committees. However, despite an ever-increasing emphasis on the importance of interdisciplinary research, the student trained in biology may still be at a loss as to what it actually means. I discuss here some considerations on how to achieve meaningful and high-quality interdisciplinary work. Copyright © 2015 Elsevier Ltd. All rights reserved.

Mechanobiology by the numbers: a close relationship between biology and physics.

Science.gov (United States)

Schwarz, Ulrich S

2017-12-01

Studies of mechanobiology lie at the interface of various scientific disciplines from biology to physics. Accordingly, quantification and mathematical modelling have been instrumental in fuelling the progress in this rapidly developing research field, assisting experimental work on many levels.

Perspectives on chemical oceanography in the 21st century: Participants of the COME ABOARD Meeting examine aspects of the field in the context of 40 years of DISCO

Science.gov (United States)

Fassbender, Andrea J.; Palevsky, Hilary I.; Martz, Todd R.; Ingalls, Anitra E.; Gledhill, Martha; Fawcett, Sarah E.; Brandes, Jay; Aluwihare, Lihini; Anderson, Robert M.; Bender, Sara; Boyle, Ed; Bronk, Debbie; Buesseler, Ken; Burdige, David J.; Casciotti, Karen; Close, Hilary; Conte, Maureen; Cutter, Greg; Estapa, Meg; Fennel, Katja; Ferron, Sara; Glazer, Brian; Goni, Miguel; Grand, Max; Guay, Chris; Hatta, Mariko; Hayes, Chris; Horner, Tristan; Ingall, Ellery; Johnson, Kenneth G.; Juranek, Laurie; Knapp, Angela; Lam, Phoebe; Luther, George; Matrai, Paty; Nicholson, David; Paytan, Adina; Pellenbarg, Robert; Popendorf, Kim; Reddy, Christopher M.; Ruttenberg, Kathleen; Sabine, Chris; Sansone, Frank; Shaltout, Nayrah; Sikes, Liz; Sundquist, Eric T.; Valentine, David; Wang, Zhao (Aleck); Wilson, Sam; Barrett, Pamela; Behrens, Melanie; Belcher, Anna; Biermann, Lauren; Boiteau, Rene; Clarke, Jennifer; Collins, Jamie; Coppola, Alysha; Ebling, Alina M.; Garcia-Tigreros, Fenix; Goldman, Johanna; Guallart, Elisa F.; Haskell, William; Hurley, Sarah; Janssen, David; Johnson, Winn; Lennhartz, Sinikka; Liu, Shuting; Rahman, Shaily; Ray, Daisy; Sarkar, Amit; Steiner, Zvika; Widner, Brittany; Yang, Bo

2017-01-01

The questions that chemical oceanographers prioritize over the coming decades, and the methods we use to address these questions, will define our field's contribution to 21st century science. In recognition of this, the U.S. National Science Foundation and National Oceanic and Atmospheric Administration galvanized a community effort (the Chemical Oceanography MEeting: A BOttom-up Approach to Research Directions, or COME ABOARD) to synthesize bottom-up perspectives on selected areas of research in Chemical Oceanography. Representing only a small subset of the community, COME ABOARD participants did not attempt to identify targeted research directions for the field. Instead, we focused on how best to foster diverse research in Chemical Oceanography, placing emphasis on the following themes: strengthening our core chemical skillset; expanding our tools through collaboration with chemists, engineers, and computer scientists; considering new roles for large programs; enhancing interface research through interdisciplinary collaboration; and expanding ocean literacy by engaging with the public. For each theme, COME ABOARD participants reflected on the present state of Chemical Oceanography, where the community hopes to go and why, and actionable pathways to get there. A unifying concept among the discussions was that dissimilar funding structures and metrics of success may be required to accommodate the various levels of readiness and stages of knowledge development found throughout our community. In addition to the science, participants of the concurrent Dissertations Symposium in Chemical Oceanography (DISCO) XXV, a meeting of recent and forthcoming Ph.D. graduates in Chemical Oceanography, provided perspectives on how our field could show leadership in addressing long-standing diversity and early-career challenges that are pervasive throughout science. Here we summarize the COME ABOARD Meeting discussions, providing a synthesis of reflections and perspectives on the

Research on condensed matter and atomic physics using major experimental facilities and devices: Physics, chemistry, biology. Reports on results. Vol. 2. 3. Solid state physics and materials science

International Nuclear Information System (INIS)

1993-01-01

This report in three volumes substantiates the contents of the programme survey published in September 1989. The progress reports cover the following research areas: Vol. I, (1). Atomic and molecular physics - free atoms, molecules, macromolecules, clusters, matrix-isolated atoms and molecules. (2) Physics and chemistry of surfaces and interfaces - epitaxy, surface structure, adsorption, electrical, magnetic, and optical properties, thin films, synthetic layer structure. Vol. II, (3). Solid-state physics, and materials science -structural research, lattice dynamics, magnetic structure and dynamics, electronic states; load; spin and pulse density fluctuations; diffusion and internal motion, defects, unordered systems and liquids. Vol. III, (4). Chemistry - bonding and structure, kinetics and reaction mechanisms, polymer research, analysis and synthesis. (5). Biology, - structure and dynamics of biological macromolecules, membrane and cell biology. (6) Development of methods and instruments - neutron sources, synchrotron sources, special accelerators, research with interlinked systems and devices. (orig.) [de

Health: The No-Man's-Land Between Physics and Biology.

Science.gov (United States)

Mansfield, Peter J

2015-10-01

Health as a positive attribute is poorly understood because understanding requires concepts from physics, of which physicians and other life scientists have a very poor grasp. This paper reviews the physics that bears on biology, in particular complex quaternions and scalar fields, relates these to the morphogenetic fields proposed by biologists, and defines health as an attribute of living action within these fields. The distinction of quality, as juxtaposed with quantity, proves essential. Its basic properties are set out, but a science and mathematics of quality are awaited. The implications of this model are discussed, particularly as proper health enhancement could set a natural limit to demand for, and therefore the cost of, medical services.

Cellular response to ionizing radiations: a study of the roles of physics and biology

International Nuclear Information System (INIS)

DeWyngaert, J.K.

1982-01-01

A study of the complementary roles of physics and biology in determining the response of cellular systems to ionizing radiations has been conducted. Upon exposure to radiation, a cell responds in a binary (yes/no) manner in terms of its proliferative ability (survival). The relationship between the survival probability and absorbed dose may then be examined in terms of relevant physical and biological parameters. The approach to these studies was to vary the physics and biology independently and observe separately their influences upon the measured effect. Unique to these studies was the use of heterogeneous tumor systems. These are solid tumors found to consist of genetically related but identifiably distinct populations of cells. The two heterogeneous systems studied, a murine system consisting of four subpopulations and a human tumor system with two subpopulations, were exposed to graded doses of 14 MeV neutrons or x-rays and their effectiveness in inducing cell lethality compared. A further examination of the radiation effect involved a study at the chemical level, measuring the ability of oxygen to potentiate the damage produced by photon irradiation. To summarize, the physics, biology and the environment have all been varied, and the systematics of the responses studied. The data were analyzed within the formalisms of the dual theory of radiation action, the repair-misrepair model, and the repair saturation model of cell killing. The change in survival curve shape and the increased effectiveness in cell killing for higher Linear Energy Transfer (LET) radiations (neutrons vs. x-rays) are discussed in relation to explanations in terms of either physical or biochemical processes

UNCERTAINTY ON RADIATION DOSES ESTIMATED BY BIOLOGICAL AND RETROSPECTIVE PHYSICAL METHODS.

Science.gov (United States)

Ainsbury, Elizabeth A; Samaga, Daniel; Della Monaca, Sara; Marrale, Maurizio; Bassinet, Celine; Burbidge, Christopher I; Correcher, Virgilio; Discher, Michael; Eakins, Jon; Fattibene, Paola; Güçlü, Inci; Higueras, Manuel; Lund, Eva; Maltar-Strmecki, Nadica; McKeever, Stephen; Rääf, Christopher L; Sholom, Sergey; Veronese, Ivan; Wieser, Albrecht; Woda, Clemens; Trompier, Francois

2018-03-01

Biological and physical retrospective dosimetry are recognised as key techniques to provide individual estimates of dose following unplanned exposures to ionising radiation. Whilst there has been a relatively large amount of recent development in the biological and physical procedures, development of statistical analysis techniques has failed to keep pace. The aim of this paper is to review the current state of the art in uncertainty analysis techniques across the 'EURADOS Working Group 10-Retrospective dosimetry' members, to give concrete examples of implementation of the techniques recommended in the international standards, and to further promote the use of Monte Carlo techniques to support characterisation of uncertainties. It is concluded that sufficient techniques are available and in use by most laboratories for acute, whole body exposures to highly penetrating radiation, but further work will be required to ensure that statistical analysis is always wholly sufficient for the more complex exposure scenarios.

Radiation physics, biophysics, and radiation biology

International Nuclear Information System (INIS)

Hall, E.J.; Zaider, M.

1991-05-01

Research at the Radiological Research Laboratory is a blend of physics, chemistry, and biology, involving research at the basic level with the admixture of a small proportion of pragmatic or applied research in support of radiation protection and/or radiotherapy. Current research topics include: oncogenic transformation assays, mutation studies involving interactions between radiation and environmental contaminants, isolation, characterization and sequencing of a human repair gene, characterization of a dominant transforming gene found in C3H 10T1/2 cells, characterize ab initio the interaction of DNA and radiation, refine estimates of the radiation quality factor Q, a new mechanistic model of oncogenesis showing the role of long-term low dose medium LET radiation, and time dependent modeling of radiation induced chromosome damage and subsequent repair or misrepair

Biological Movement and Laws of Physics.

Science.gov (United States)

Latash, Mark L

2017-07-01

Living systems may be defined as systems able to organize new, biology-specific, laws of physics and modify their parameters for specific tasks. Examples include the force-length muscle dependence mediated by the stretch reflex, and the control of movements with modification of the spatial referent coordinates for salient performance variables. Low-dimensional sets of referent coordinates at a task level are transformed to higher-dimensional sets at lower hierarchical levels in a way that ensures stability of performance. Stability of actions can be controlled independently of the actions (e.g., anticipatory synergy adjustments). Unintentional actions reflect relaxation processes leading to drifts of corresponding referent coordinates in the absence of changes in external load. Implications of this general framework for movement disorders, motor development, motor skill acquisition, and even philosophy are discussed.

Research on condensed matter and atomic physics, using major experimental facilities and devices: Physics, chemistry, biology. Reports on results. Vol. 1. 1. Atomic and molecular physics. 2. Physics and chemistry of surfaces and interfaces

International Nuclear Information System (INIS)

1993-01-01

This report in three volumes substantiates the contents of the programme survey published in September 1989. The progress reports cover the following research areas: Vol. I, (1). Atomic and molecular physics - free atoms, molecules, macromolecules, clusters, matrix-isolated atoms and molecules. (2) Physics and chemistry of surfaces and interfaces - epitaxy, surface structure, adsorption, electrical, magnetic, and optical properties, thin films, synthetic layer structure. Vol. II, (3). Solid-state physics, and materials science -structural research, lattice dynamics, magnetic structure and dynamics, electronic states; load; spin and pulse density fluctuations; diffusion and internal motion, defects, unordered systems and liquids. Vol. III, (4). Chemistry - bonding and structure, kinetics and reaction mechanisms, polymer research, analysis and synthesis. (5). Biology, - structure and dynamics of biological macromolecules, membrane and cell biology. (6) Development of methods and instruments - neutron sources, synchrotron sources, special accelerators, research with interlinked systems and devices. (orig.) [de

4D-Var data assimilation system for a coupled physical-biological ...

Indian Academy of Sciences (India)

A 3-compartment model of phytoplankton growth dynamics has been coupled with a primitive-equation circulation model to better understand and quantify physical and biological processes in the Adriatic Sea. This paper presents the development and application of a data assimilation procedure based on optimal.

S.E.A. Lab. Science Experiments and Activities. Marine Science for High School Students in Chemistry, Biology and Physics.

Science.gov (United States)

Hart, Kathy, Ed.

A series of science experiments and activities designed for secondary school students taking biology, chemistry, physics, physical science or marine science courses are outlined. Each of the three major sections--chemistry, biology, and physics--addresses concepts that are generally covered in those courses but incorporates aspects of marine…

Radiation physics, biophysics, and radiation biology. Progress report, December 1, 1993--November 30, 1994

Energy Technology Data Exchange (ETDEWEB)

Hall, E.J.; Zaider, M.

1994-05-01

Research at the Center for Radiological Research is a blend of physics, chemistry and biology and epitomizes the multidisciplinary approach towards understanding the mechanisms involved in the health problems resulting from human exposure to ionizing radiations. To an increasing extent, the focus of attention is on biochemistry and the application of the techniques of molecular biology to the problems of radiation biology. Research highlights from the past year are briefly described.

Radiation physics, biophysics, and radiation biology. Progress report, December 1, 1993--November 30, 1994

International Nuclear Information System (INIS)

Hall, E.J.; Zaider, M.

1994-05-01

Research at the Center for Radiological Research is a blend of physics, chemistry and biology and epitomizes the multidisciplinary approach towards understanding the mechanisms involved in the health problems resulting from human exposure to ionizing radiations. To an increasing extent, the focus of attention is on biochemistry and the application of the techniques of molecular biology to the problems of radiation biology. Research highlights from the past year are briefly described

Biological and Physical Space Research Laboratory 2002 Science Review

Science.gov (United States)

Curreri, P. A. (Editor); Robinson, M. B. (Editor); Murphy, K. L. (Editor)

2003-01-01

With the International Space Station Program approaching core complete, our NASA Headquarters sponsor, the new Code U Enterprise, Biological and Physical Research, is shifting its research emphasis from purely fundamental microgravity and biological sciences to strategic research aimed at enabling human missions beyond Earth orbit. Although we anticipate supporting microgravity research on the ISS for some time to come, our laboratory has been vigorously engaged in developing these new strategic research areas.This Technical Memorandum documents the internal science research at our laboratory as presented in a review to Dr. Ann Whitaker, MSFC Science Director, in July 2002. These presentations have been revised and updated as appropriate for this report. It provides a snapshot of the internal science capability of our laboratory as an aid to other NASA organizations and the external scientific community.

Oceanography and Geoscience Scholars at Texas A&M University Funded through the NSF S-STEM (Scholarships in Science, Technology, Engineering and Mathematics) Program

Science.gov (United States)

Richardson, M. J.; Gardner, W. D.

2016-02-01

Over the last seven years we have led the creation and implementation of the Oceanography and Geoscience Scholars programs at Texas A&M University. Through these programs we have been able to provide scholarship support for 92 undergraduates in Geosciences and 29 graduate students in Oceanography. Fifty-seven undergraduate scholars have graduated in Geosciences: 30 undergraduate students in Meteorology, 7 in Geology, and 20 in Environmental Geosciences. Two students have graduated in other STEM disciplines. Twenty-four students are in the process of completing their undergraduate degrees in STEM disciplines. Twenty-three students have graduated with MS or PhD degrees in Oceanography and five PhD students are completing their dissertations. As specified in the program solicitation all of the scholars are academically talented students with demonstrated financial need as defined by the FAFSA (Free Application for Federal Student Aid). We have endeavored to recruit students from underrepresented groups. One-third of the undergraduate scholars were from underrepresented groups; 28% of the graduate students. We will present the challenges and successes of these programs.

NSC review

Energy Technology Data Exchange (ETDEWEB)

1977-01-01

Activities of the National Science Council of the Republic of China are reported in the natural and mathematical sciences (chemistry, physics, mathematics, earth sciences, oceanography); engineering and applied sciences; biological, agricultural, and medical sciences; and humanities and social sciences. Efforts in international science cooperation and services for scientific researchers are also summarized. (RWR)

4D-Var data assimilation system for a coupled physical biological ...

Indian Academy of Sciences (India)

A 3-compartment model of phytoplankton growth dynamics has been coupled with a primitive-equation circulation model to better understand and quantify physical and biological processes in the Adriatic Sea. This paper presents the development and application of a data assimilation procedure based on optimal control ...

Physics of non-Newtonian fluids and interdisciplinary relations (biology and criminology)

Science.gov (United States)

Holubova, R.

2018-03-01

The aim of the paper is the presentation of an interdisciplinary topic that allows applying content knowledge in physics, mathematics and biology in real life environment. Students use to play games and view crime scenes but in common they have little knowledge about the science used during crime scene investigation. In this paper the science background of blood spatter analysis is presented—the physics of non-Newtonian fluids, the biology of blood and mathematics—the measurement and calculation of the angle of inpact, the relationship between height and spatter diameter. This topic was choosen according to the analysis of interviews with secondary and high school learners realized at four schools in Moravia, Czech Republic. The topic can be taught at secondary schools so as at a higher level at high schools. Hands-on activities are included. The teaching strategy supports group work. The appropriateness and reasonableness of the topic was checked in the real teaching process and the activities have had a positive feedback.

Modelling the Influence of Shielding on Physical and Biological Organ Doses

CERN Document Server

Ballarini, Francesca; Ferrari, Alfredo; Ottolenghi, Andrea; Pelliccioni, Maurizio; Scannicchio, Domenico

2002-01-01

Distributions of "physical" and "biological" dose in different organs were calculated by coupling the FLUKA MC transport code with a geometrical human phantom inserted into a shielding box of variable shape, thickness and material. While the expression "physical dose" refers to the amount of deposited energy per unit mass (in Gy), "biological dose" was modelled with "Complex Lesions" (CL), clustered DNA strand breaks calculated in a previous work based on "event-by-event" track-structure simulations. The yields of complex lesions per cell and per unit dose were calculated for different radiation types and energies, and integrated into a version of FLUKA modified for this purpose, allowing us to estimate the effects of mixed fields. As an initial test simulation, the phantom was inserted into an aluminium parallelepiped and was isotropically irradiated with 500 MeV protons. Dose distributions were calculated for different values of the shielding thickness. The results were found to be organ-dependent. In most ...

Research Data in Core Journals in Biology, Chemistry, Mathematics, and Physics.

Directory of Open Access Journals (Sweden)

Ryan P Womack

Full Text Available This study takes a stratified random sample of articles published in 2014 from the top 10 journals in the disciplines of biology, chemistry, mathematics, and physics, as ranked by impact factor. Sampled articles were examined for their reporting of original data or reuse of prior data, and were coded for whether the data was publicly shared or otherwise made available to readers. Other characteristics such as the sharing of software code used for analysis and use of data citation and DOIs for data were examined. The study finds that data sharing practices are still relatively rare in these disciplines' top journals, but that the disciplines have markedly different practices. Biology top journals share original data at the highest rate, and physics top journals share at the lowest rate. Overall, the study finds that within the top journals, only 13% of articles with original data published in 2014 make the data available to others.

U.S. Capability to Support Ocean Engineering in the Arctic.

Science.gov (United States)

1984-11-01

ntinudoladgsdvlpetlh Arctic will have an effect on its physical and biolociral U.S. Capability *to Support Ocean Engineering in the Arctic Committee on Assessment of...Richard J. Seymour * Exxon Production Research Scripps Institution of Oceanography - Houston, Texas La Jolla, California William Creelman William H... physical and biological environment. A subject of concern and controversy has been the potential effect that oil and gas activities may have on the

Supporting students in building interdisciplinary connections across physics and biology

Science.gov (United States)

Turpen, Chandra

2014-03-01

Our research team has been engaged in the iterative redesign of an Introductory Physics course for Life Science (IPLS) majors to explicitly bridge biology and physics in ways that are authentic to the disciplines. Our interdisciplinary course provides students opportunities to examine how modeling decisions (e.g. knowing when and how to use different concepts, identifying implicit assumptions, making and justifying assumptions) may differ depending on canonical disciplinary aims and interests. Our focus on developing students' interdisciplinary reasoning skills requires 1) shifting course topics to focus on core ideas that span the disciplines, 2) shifting epistemological expectations, and 3) foregrounding typically tacit disciplinary assumptions. In working to build an authentic interdisciplinary course that bridges physics and biology, we pay careful attention to supporting students in constructing these bridges. This course has been shown to have important impacts: a) students seek meaningful connections between the disciplines, b) students perceive relevance and utility of ideas from different disciplines, and c) students reconcile challenging disciplinary ideas. Although our focus has been on building interdisciplinary coherence, we have succeeded in maintaining strong student learning gains on fundamental physics concepts and allowed students to deepen their understanding of challenging concepts in thermodynamics. This presentation will describe the shifts in course content and the modern pedagogical approaches that have been integrated into the course, and provide an overview of key research results from this project. These results may aid physicists in reconsidering how they can meaningfully reach life-science students. This work is supported by NSF-TUES DUE 11-22818, the HHMI NEXUS grant, and a NSF Graduate Research Fellowship (DGE 0750616).

Leveraging a Relationship with Biology to Expand a Relationship with Physics

Science.gov (United States)

Sawtelle, Vashti; Turpen, Chandra

2016-01-01

This work examines how experiences in one disciplinary domain (biology) can impact the relationship a student builds with another domain (physics). We present a model for disciplinary relationships using the constructs of identity, affect, and epistemology. With these constructs we examine an ethnographic case study of a student who experienced a…

Radiation physics, biophysics, and radiation biology: Progress report, December 1, 1987-November 30, 1988

International Nuclear Information System (INIS)

Hall, E.J.; Zaider, M.; Delegianis, M.J.

1988-07-01

Research at the Radiological Research Laboratory is a blend of physics, chemistry, and biology, involving research at the basic level with the admixture of a small proportion of pragmatic or applied research in support of radiation protection and/or radiation therapy. At the current level of funding, approximately one quarter of the research of the Laboratory could be regarded as in support of radiotherapy, with the remainder addressing more basic issues. The new initiatives have been in two directions. First, there has been an increased emphasis on research in radiation chemistry, inasmuch as this subject which involves the study of free radicals and fast radiation chemistry processes starts to bridge the gap between physics and biology, between the initial deposition of radiant energy and its final expression in terms of biological consequences. Second, the emphasis in the biological research has moved towards studies at the molecular level, with the appointment of new members of staff with expertise in this area. Individual chapters were processed separately for the data base

The definitions of information and meaning two possible boundaries between physics and biology.

Science.gov (United States)

Barbieri, Marcello

2004-01-01

The standard approach to the definition of the physical quantities has not produced satisfactory results with the concepts of information and meaning. In the case of information we have at least two unrelated definitions, while in the case of meaning we have no definition at all. Here it is shown that both information and meaning can be defined by operative procedures, but it is also pointed out that we need to recognize them as a new type of natural entities. They are not quantities (neither fundamental nor derived) because they cannot be measured, and they are not qualities because are not subjective features. Here it is proposed to call them nominable entities, i.e., entities which can be specified only by naming their components in their natural order. If the genetic code is not a linguistic metaphor but a reality, we must conclude that information and meaning are real natural entities, and now we must also conclude that they are not equivalent to the quantities and qualities of our present theoretical framework. This gives us two options. One is to extend the definition of physics and say that the list of its fundamental entities must include information and meaning. The other is to say that physics is the science of quantities only, and in this case information and meaning become the exclusive province of biology. The boundary between physics and biology, in short, is a matter of convention, but the existence of information and meaning is not. We can decide to study them in the framework of an extended physics or in a purely biological framework, but we cannot avoid studying them for what they are, i.e., as fundamental components of the fabric of Nature.

The Use of Textbooks for Advanced-Level GCE Courses in Physics, Chemistry and Biology by Sixth-Form Students.

Science.gov (United States)

Newton, D. P.

1984-01-01

A survey of sixth-form students to determine the level of A-level textbook use in physics, chemistry, and biology in English schools found that texts are used primarily after the lesson, at the student's discretion, and with great variations between students. Biology texts were used most, and physics texts used least. (MBR)

Preservice Teachers' Epistemological Beliefs in Physics, Chemistry, and Biology: A Mixed Study

Science.gov (United States)

Topcu, Mustafa Sami

2013-01-01

The purposes of the study were to assess preservice teachers' domain-specific epistemological beliefs and to investigate whether preservice teachers distinguish disciplinary differences (physics, chemistry, and biology) in domain-specific epistemological beliefs. Mixed-method research design guided the present research. The researcher explored…

Oil sardine and Indian mackerel: Their fishery, problems and coastal oceanography

Digital Repository Service at National Institute of Oceanography (India)

Madhupratap, M.; Shetye, S.R.; Nair, K.N.V.; Nair, S.R.S.

The sardine and mackerel fishery is commercially exploited successfully along the west coast of India. The fish itself times its appearance to exploit the productive southwest monsoon period. The chain of events-physical, chemical and biological...

Anil, Dr Arga Chandrashekar

Indian Academy of Sciences (India)

Home; Fellowship. Fellow Profile. Elected: 2015 Section: Earth & Planetary Sciences. Anil, Dr Arga Chandrashekar Ph.D. (Karnatak). Date of birth: 23 January 1959. Specialization: Biological Oceanography, Marine Ecology, Marine Biology Address: Chief Scientist, National Institute of Oceanography, Dona Paula 403 004, ...

Physical Chemistry for the Chemical and Biological Sciences (by Raymond Chang)

Science.gov (United States)

Pounds, Andrew

2001-05-01

This book does offer an alternative approach to physical chemistry that is particularly well suited for those who want to pursue a course of study more focused on the biological sciences. It could also be an excellent choice for schools that mainly serve preprofessional programs or for schools that have split physical chemistry tracks to independently serve the B.S. and B.A. degrees. Since the book focuses on single-variable mathematics, schools that require only one year of calculus for their chemistry degree could also think about adopting it. However, in general, the use of the text as a drop-in replacement for physical chemistry for the B.S. degree is questionable owing to its lack of focus on quantum mechanics and its implications for spectroscopy.

The Central Role of the Mississippi River and its Delta in the Oceanography, Ecology and Economy of the Gulf of Mexico: A Synthesis

Science.gov (United States)

Kolker, A.; Chu, P. Y.; Taylor, C.; Roberts, B. J.; Renfro, A. A.; Peyronnin, N.; Fitzpatrick, C.

2017-12-01

While it has long been recognized that the Mississippi River is the largest source of freshwater, nutrients and sediments to the Gulf of Mexico, many questions remain unanswered about the impacts of the material on oceanography of the system. Here we report on the results of a regional synthesis study that examined how the Mississippi River and its delta influence the oceanography, ecology and the economy of the Gulf of Mexico. By employing a series of expert-opinion working groups, and using multi-dimensional numerical physical oceanographic models coupled to in-situ environmental data, this project is working to quantify how variability in discharge, meteorological forcings, and seasonal conditions influence the spatial distribution of the Mississippi River plume and its influence. Results collected to date indicate that the dimensions of the river plume are closely coupled to discharge, but in a non-linear fashion, that incorporates fluxes, flow distributions, offshore and meteorological forcings in the context of the local bathymetry. Ongoing research is using these human and numerical tools to help further elucidate the impacts of this river on the biogeochemistry of the region, and the distribution of key macrofauna. Further work by this team is examining how the delta's impacts on the ecology of the region, and the role that the delta plays as both a source of material for key offshore fauna, and a barrier to dispersal. This information is being used to help further the development of a research agenda for the northern Gulf of Mexico that will be useful through the mid-21st century.

Integrating soil physical and biological properties in contrasting tillage systems in organic and conventional farming

NARCIS (Netherlands)

Crittenden, S.J.; Goede, de R.G.M.

2016-01-01

Though soil physical and soil biological properties are intrinsically linked in the soil environment they are often studied separately. This work adds value to analyses of soil biophysical quality of tillage systems under organic and conventional farming systems by correlating physical and

Physics of Non-Newtonian Fluids and Interdisciplinary Relations (Biology and Criminology)

Science.gov (United States)

Holubova, R.

2018-01-01

The aim of the paper is the presentation of an interdisciplinary topic that allows applying content knowledge in physics, mathematics and biology in real life environment. Students use to play games and view crime scenes but in common they have little knowledge about the science used during crime scene investigation. In this paper the science…

Helium ions for radiotherapy? Physical and biological verifications of a novel treatment modality

Energy Technology Data Exchange (ETDEWEB)

Krämer, Michael, E-mail: m.kraemer@gsi.de; Scifoni, Emanuele; Schuy, Christoph; Rovituso, Marta; Maier, Andreas; Kaderka, Robert; Kraft-Weyrather, Wilma [Biophysics, GSI Helmholtzzentrum für Schwerionenforschung GmbH, Planckstr. 1, 64291 Darmstadt (Germany); Tinganelli, Walter; Durante, Marco [Biophysics, GSI Helmholtzzentrum für Schwerionenforschung GmbH, Planckstr. 1, 64291 Darmstadt, Germany and Trento Institute for Fundamental Physics and Application (TIFPA-INFN), 38123, via Sommarive 14, Trento (Italy); Brons, Stephan; Tessonnier, Thomas [Heidelberger Ionenstrahl-Therapiezentrum (HIT), Im Neuenheimer Feld 450, 69120 Heidelberg, Germany and Radioonkologie und Strahlentherapie, Universitätsklinikums Heidelberg, Im Neuenheimer Feld 400, 69120 Heidelberg (Germany); Parodi, Katia [Heidelberger Ionenstrahl-Therapiezentrum (HIT), Im Neuenheimer Feld 450, 69120 Heidelberg (Germany); Radioonkologie und Strahlentherapie, Universitätsklinikums Heidelberg, Im Neuenheimer Feld 400, 69120 Heidelberg (Germany); Ludwig-Maximilians-Universitaet Muenchen (LMU Munich), Department of Medical Physics, Am Coulombwall 1, 85748 Munich (Germany)

2016-04-15

Purpose: Modern facilities for actively scanned ion beam radiotherapy allow in principle the use of helium beams, which could present specific advantages, especially for pediatric tumors. In order to assess the potential use of these beams for radiotherapy, i.e., to create realistic treatment plans, the authors set up a dedicated {sup 4}He beam model, providing base data for their treatment planning system TRiP98, and they have reported that in this work together with its physical and biological validations. Methods: A semiempirical beam model for the physical depth dose deposition and the production of nuclear fragments was developed and introduced in TRiP98. For the biological effect calculations the last version of the local effect model was used. The model predictions were experimentally verified at the HIT facility. The primary beam attenuation and the characteristics of secondary charged particles at various depth in water were investigated using {sup 4}He ion beams of 200 MeV/u. The nuclear charge of secondary fragments was identified using a ΔE/E telescope. 3D absorbed dose distributions were measured with pin point ionization chambers and the biological dosimetry experiments were realized irradiating a Chinese hamster ovary cells stack arranged in an extended target. Results: The few experimental data available on basic physical processes are reproduced by their beam model. The experimental verification of absorbed dose distributions in extended target volumes yields an overall agreement, with a slight underestimation of the lateral spread. Cell survival along a 4 cm extended target is reproduced with remarkable accuracy. Conclusions: The authors presented a simple simulation model for therapeutical {sup 4}He beams which they introduced in TRiP98, and which is validated experimentally by means of physical and biological dosimetries. Thus, it is now possible to perform detailed treatment planning studies with {sup 4}He beams, either exclusively or in

Complex network problems in physics, computer science and biology

Science.gov (United States)

Cojocaru, Radu Ionut

There is a close relation between physics and mathematics and the exchange of ideas between these two sciences are well established. However until few years ago there was no such a close relation between physics and computer science. Even more, only recently biologists started to use methods and tools from statistical physics in order to study the behavior of complex system. In this thesis we concentrate on applying and analyzing several methods borrowed from computer science to biology and also we use methods from statistical physics in solving hard problems from computer science. In recent years physicists have been interested in studying the behavior of complex networks. Physics is an experimental science in which theoretical predictions are compared to experiments. In this definition, the term prediction plays a very important role: although the system is complex, it is still possible to get predictions for its behavior, but these predictions are of a probabilistic nature. Spin glasses, lattice gases or the Potts model are a few examples of complex systems in physics. Spin glasses and many frustrated antiferromagnets map exactly to computer science problems in the NP-hard class defined in Chapter 1. In Chapter 1 we discuss a common result from artificial intelligence (AI) which shows that there are some problems which are NP-complete, with the implication that these problems are difficult to solve. We introduce a few well known hard problems from computer science (Satisfiability, Coloring, Vertex Cover together with Maximum Independent Set and Number Partitioning) and then discuss their mapping to problems from physics. In Chapter 2 we provide a short review of combinatorial optimization algorithms and their applications to ground state problems in disordered systems. We discuss the cavity method initially developed for studying the Sherrington-Kirkpatrick model of spin glasses. We extend this model to the study of a specific case of spin glass on the Bethe

Foundations of anticipatory logic in biology and physics.

Science.gov (United States)

Bettinger, Jesse S; Eastman, Timothy E

2017-12-01

Recent advances in modern physics and biology reveal several scenarios in which top-down effects (Ellis, 2016) and anticipatory systems (Rosen, 1980) indicate processes at work enabling active modeling and inference such that anticipated effects project onto potential causes. We extrapolate a broad landscape of anticipatory systems in the natural sciences extending to computational neuroscience of perception in the capacity of Bayesian inferential models of predictive processing. This line of reasoning also comes with philosophical foundations, which we develop in terms of counterfactual reasoning and possibility space, Whitehead's process thought, and correlations with Eastern wisdom traditions. Copyright © 2017 Elsevier Ltd. All rights reserved.

Progress report, Biology and Health Physics Division, October 1 to December 31, 1975

International Nuclear Information System (INIS)

1976-01-01

Interim research results are reported in health physics (dosimetry, monitoring), environmental research, population research (tumor induction in mammals, human health record linkage), and biology (radiobiology of rodents, bacteria, bacteriophage T4, and insects). (E.C.B.)

Physical, chemical, and biological properties of radiocerium relevant to radiation protection guidelines

International Nuclear Information System (INIS)

Anon.

1978-01-01

Present knowledge of the relevant physical, chemical, and biological properties of radiocerium as a basis for establishing radiation protection guidelines is summarized. The first section of the report reviews the chemical and physical properties of radiocerium relative to the biological behavior of internally-deposited cerium and other lanthanides. The second section of the report gives the sources of radiocerium in the environment and the pathways to man. The third section of the report describes the metabolic fate of cerium in several mammalian species as a basis for predicting its metabolic fate in man. The fourth section of the report considers the biomedical effects of radiocerium in light of extensive animal experimentation. The last two sections of the report describe the history of radiation protection guidelines for radiocerium and summarize data required for evaluating the adequacy of current radiation protection guidelines. Each section begins with a summary of the most important findings that follow

Educational Experiences in Oceanography through Hands-On Involvement with Surface Drifters: an Introduction to Ocean Currents, Engineering, Data Collection, and Computer Science

Science.gov (United States)

Anderson, T.

2015-12-01

The Northeast Fisheries Science Center's (NEFSC) Student Drifters Program is providing education opportunities for students of all ages. Using GPS-tracked ocean drifters, various educational institutions can provide students with hands-on experience in physical oceanography, engineering, and computer science. In building drifters many high school and undergraduate students may focus on drifter construction, sometimes designing their own drifter or attempting to improve current NEFSC models. While learning basic oceanography younger students can build drifters with the help of an educator and directions available on the studentdrifters.org website. Once drifters are deployed, often by a local mariner or oceanographic partner, drifter tracks can be visualised on maps provided at http://nefsc.noaa.gov/drifter. With the lesson plans available for those interested in computer science, students may download, process, and plot the drifter position data with basic Python code provided. Drifter tracks help students to visualize ocean currents, and also allow them to understand real particle tracking applications such as in search and rescue, oil spill dispersion, larval transport, and the movement of injured sea animals. Additionally, ocean circulation modelers can use student drifter paths to validate their models. The Student Drifters Program has worked with over 100 schools, several of them having deployed drifters on the West Coast. Funding for the program often comes from individual schools and small grants but in the future will preferably come from larger government grants. NSF, Sea-Grant, NOAA, and EPA are all possible sources of funding, especially with the support of multiple schools and large marine education associations. The Student Drifters Program is a unique resource for educators, students, and scientists alike.

A model of heavy ion detection in physical and biological systems

International Nuclear Information System (INIS)

Waligorski, M.P.R.

1988-01-01

Track structure theory (the Katz model) and its application to the detection of heavy ions in physical and biological systems are reviewed. Following the use of a new corrected formula describing the radial distribution of average dose around the path of a heavy ion, based on results of Monte Carlo calculations and on results of experimental measurements, better agreement is achieved between model calculations and experimentally measured relative effectiveness, for enzymatic and viral systems, for the Fricke dosemeter and for alanine and thermoluminescent (TDL-700) dosemeters irradiated with beams of heavy charged particles. From experimentally measured RBE dependences for survival and frequency of neoplastic transformations in a mammalian cell culture irradiated with beams of energetic heavy ions, values of model parameters for these biological endpoints have been extracted, and a model extrapolation to the low-dose region performed. Results of model calculations are then compared with evaluations of the lung cancer hazard in populations exposed to radon and its progeny. The model can be applied to practical phenomenological analysis of radiation damage in solid-state systems and to dosimetry of charged particle and fast neutron beams using a variety of detectors. The model can also serve as a guide in building more basic models of the action of ionizing radiation with physical and biological systems and guide of development of models of radiation risk more relevant than that used presently. 185 refs., 31 figs., 3 tabs. (author)

Progress report, Biology and Health Physics Division, July 1 to September 30, 1975

International Nuclear Information System (INIS)

1975-11-01

Interim results are reported for research in health physics, i.e. dosimetry, detectors, and monitoring; environmental research (limnology, radionuclide migration and kinetics; population research (radiation carcinogenesis, radiation effects in human populations); and biology (radiobiology). (E.C.B.)

Progress report, Biology and Health Physics Division, April 1 to June 30, 1975

International Nuclear Information System (INIS)

1975-09-01

Interim results are reported on research at CRNL in health physics (dosimetry, instrumentation, monitoring); environmental research (limnology, radionuclide migration and kinetics); populaton research (tumor induction in mammals, human health records); and biology (radiobiology, genetic studies). (E.C.B.)

Physical and biological factors determining the effective proton range

International Nuclear Information System (INIS)

Grün, Rebecca; Friedrich, Thomas; Krämer, Michael; Scholz, Michael; Zink, Klemens; Durante, Marco; Engenhart-Cabillic, Rita

2013-01-01

Purpose: Proton radiotherapy is rapidly becoming a standard treatment option for cancer. However, even though experimental data show an increase of the relative biological effectiveness (RBE) with depth, particularly at the distal end of the treatment field, a generic RBE of 1.1 is currently used in proton radiotherapy. This discrepancy might affect the effective penetration depth of the proton beam and thus the dose to the surrounding tissue and organs at risk. The purpose of this study was thus to analyze the impact of a tissue and dose dependent RBE of protons on the effective range of the proton beam in comparison to the range based on a generic RBE of 1.1.Methods: Factors influencing the biologically effective proton range were systematically analyzed by means of treatment planning studies using the Local Effect Model (LEM IV) and the treatment planning software TRiP98. Special emphasis was put on the comparison of passive and active range modulation techniques.Results: Beam energy, tissue type, and dose level significantly affected the biological extension of the treatment field at the distal edge. Up to 4 mm increased penetration depth as compared to the depth based on a constant RBE of 1.1. The extension of the biologically effective range strongly depends on the initial proton energy used for the most distal layer of the field and correlates with the width of the distal penumbra. Thus, the range extension, in general, was more pronounced for passive as compared to active range modulation systems, whereas the maximum RBE was higher for active systems.Conclusions: The analysis showed that the physical characteristics of the proton beam in terms of the width of the distal penumbra have a great impact on the RBE gradient and thus also the biologically effective penetration depth of the beam

Tritium in the Physical and Biological Sciences. Vol. II. Proceedings of the Symposium on the Detection and Use of Tritium in the Physical and Biological Sciences

Energy Technology Data Exchange (ETDEWEB)

NONE

1962-02-15

The use of tritium for research in physics, chemistry, biology and hydrology has in recent years become increasingly important. It was for this reason that the first international conference to discuss the progress of new developments was organized by the IAEA in conjunction with the Joint Commission on Applied Radioactivity and held from 3 - 10 May 1961, in Vienna. The first five sessions of the Symposium were devoted to the use of tritium in hydrology, physics and chemistry. Special emphasis was laid on the role of tritium as a tracer in hydrology, especially in the study of water movement. The establishment and improvement of counting and detection techniques to facilitate the application of tritium as a tracer was another aspect discussed in this part of the proceedings. Papers were read on the preparation of tritiated compounds and it was generally agreed that further clarification of the mechanism of various techniques, and of the Wilzbach gas exposure technique in particular, would lead to further developments in the synthesis of a number of tritium compounds important in biology. Other papers were concerned with tritium applications to studies of the mechanism of some chemical reactions together with the effects of tritium isotopes. During the second part of the Symposium the biological applications of tritium and tritiated compounds were discussed. These included general problems connected with the biological uses of tritium and the radiation effects of tritium on living organisms such as viruses, bacteria and cancer cells. The value of tritium in biological studies became apparent because of the ease with which a large number of metabolically active compounds such as hormones, vitamins and other important constituents in the body can be labelled with tritium. Tritium is also a weak beta-emitter and autoradiographs of tissues and single cells containing tritium-labelled compounds allow an excellent localization of the tracer. The Symposium was attended by

Tritium in the Physical and Biological Sciences. Vol. II. Proceedings of the Symposium on the Detection and Use of Tritium in the Physical and Biological Sciences

International Nuclear Information System (INIS)

1962-01-01

The use of tritium for research in physics, chemistry, biology and hydrology has in recent years become increasingly important. It was for this reason that the first international conference to discuss the progress of new developments was organized by the IAEA in conjunction with the Joint Commission on Applied Radioactivity and held from 3 — 10 May 1961, in Vienna. The first five sessions of the Symposium were devoted to the use of tritium in hydrology, physics and chemistry. Special emphasis was laid on the role of tritium as a tracer in hydrology, especially in the study of water movement. The establishment and improvement of counting and detection techniques to facilitate the application of tritium as a tracer was another aspect discussed in this part of the proceedings. Papers were read on the preparation of tritiated compounds and it was generally agreed that further clarification of the mechanism of various techniques, and of the Wilzbach gas exposure technique in particular, would lead to further developments in the synthesis of a number of tritium compounds important in biology. Other papers were concerned with tritium applications to studies of the mechanism of some chemical reactions together with the effects of tritium isotopes. During the second part of the Symposium the biological applications of tritium and tritiated compounds were discussed. These included general problems connected with the biological uses of tritium and the radiation effects of tritium on living organisms such as viruses, bacteria and cancer cells. The value of tritium in biological studies became apparent because of the ease with which a large number of metabolically active compounds such as hormones, vitamins and other important constituents in the body can be labelled with tritium. Tritium is also a weak beta-emitter and autoradiographs of tissues and single cells containing tritium-labelled compounds allow an excellent localization of the tracer. The Symposium was attended

Simulating biological processes: stochastic physics from whole cells to colonies

Science.gov (United States)

Earnest, Tyler M.; Cole, John A.; Luthey-Schulten, Zaida

2018-05-01

The last few decades have revealed the living cell to be a crowded spatially heterogeneous space teeming with biomolecules whose concentrations and activities are governed by intrinsically random forces. It is from this randomness, however, that a vast array of precisely timed and intricately coordinated biological functions emerge that give rise to the complex forms and behaviors we see in the biosphere around us. This seemingly paradoxical nature of life has drawn the interest of an increasing number of physicists, and recent years have seen stochastic modeling grow into a major subdiscipline within biological physics. Here we review some of the major advances that have shaped our understanding of stochasticity in biology. We begin with some historical context, outlining a string of important experimental results that motivated the development of stochastic modeling. We then embark upon a fairly rigorous treatment of the simulation methods that are currently available for the treatment of stochastic biological models, with an eye toward comparing and contrasting their realms of applicability, and the care that must be taken when parameterizing them. Following that, we describe how stochasticity impacts several key biological functions, including transcription, translation, ribosome biogenesis, chromosome replication, and metabolism, before considering how the functions may be coupled into a comprehensive model of a ‘minimal cell’. Finally, we close with our expectation for the future of the field, focusing on how mesoscopic stochastic methods may be augmented with atomic-scale molecular modeling approaches in order to understand life across a range of length and time scales.

Science requirements for free-flying imaging radar (FIREX) experiment for sea ice, renewable resources, nonrenewable resources and oceanography

Science.gov (United States)

Carsey, F.

1982-01-01

A future bilateral SAR program was studied. The requirements supporting a SAR mission posed by science and operations in sea-ice-covered waters, oceanography, renewable resources, and nonrenewable resources are addressed. The instrument, mission, and program parameters were discussed. Research investigations supporting a SAR flight and the subsequent overall mission requirements and tradeoffs are summarized.

Where Is Earth Science? Mining for Opportunities in Chemistry, Physics, and Biology

Science.gov (United States)

Thomas, Julie; Ivey, Toni; Puckette, Jim

2013-01-01

The Earth sciences are newly marginalized in K-12 classrooms. With few high schools offering Earth science courses, students' exposure to the Earth sciences relies on the teacher's ability to incorporate Earth science material into a biology, chemistry, or physics course. ''G.E.T. (Geoscience Experiences for Teachers) in the Field'' is an…

RENEB - Running the European Network of biological dosimetry and physical retrospective dosimetry.

Science.gov (United States)

Kulka, Ulrike; Abend, Michael; Ainsbury, Elizabeth; Badie, Christophe; Barquinero, Joan Francesc; Barrios, Lleonard; Beinke, Christina; Bortolin, Emanuela; Cucu, Alexandra; De Amicis, Andrea; Domínguez, Inmaculada; Fattibene, Paola; Frøvig, Anne Marie; Gregoire, Eric; Guogyte, Kamile; Hadjidekova, Valeria; Jaworska, Alicja; Kriehuber, Ralf; Lindholm, Carita; Lloyd, David; Lumniczky, Katalin; Lyng, Fiona; Meschini, Roberta; Mörtl, Simone; Della Monaca, Sara; Monteiro Gil, Octávia; Montoro, Alegria; Moquet, Jayne; Moreno, Mercedes; Oestreicher, Ursula; Palitti, Fabrizio; Pantelias, Gabriel; Patrono, Clarice; Piqueret-Stephan, Laure; Port, Matthias; Prieto, María Jesus; Quintens, Roel; Ricoul, Michelle; Romm, Horst; Roy, Laurence; Sáfrány, Géza; Sabatier, Laure; Sebastià, Natividad; Sommer, Sylwester; Terzoudi, Georgia; Testa, Antonella; Thierens, Hubert; Turai, Istvan; Trompier, François; Valente, Marco; Vaz, Pedro; Voisin, Philippe; Vral, Anne; Woda, Clemens; Zafiropoulos, Demetre; Wojcik, Andrzej

2017-01-01

A European network was initiated in 2012 by 23 partners from 16 European countries with the aim to significantly increase individualized dose reconstruction in case of large-scale radiological emergency scenarios. The network was built on three complementary pillars: (1) an operational basis with seven biological and physical dosimetric assays in ready-to-use mode, (2) a basis for education, training and quality assurance, and (3) a basis for further network development regarding new techniques and members. Techniques for individual dose estimation based on biological samples and/or inert personalized devices as mobile phones or smart phones were optimized to support rapid categorization of many potential victims according to the received dose to the blood or personal devices. Communication and cross-border collaboration were also standardized. To assure long-term sustainability of the network, cooperation with national and international emergency preparedness organizations was initiated and links to radiation protection and research platforms have been developed. A legal framework, based on a Memorandum of Understanding, was established and signed by 27 organizations by the end of 2015. RENEB is a European Network of biological and physical-retrospective dosimetry, with the capacity and capability to perform large-scale rapid individualized dose estimation. Specialized to handle large numbers of samples, RENEB is able to contribute to radiological emergency preparedness and wider large-scale research projects.

Physical descriptions of the bacterial nucleoid at large scales, and their biological implications

Energy Technology Data Exchange (ETDEWEB)

Benza, Vincenzo G [Dipartimento di Fisica e Matematica, Universita dell' Insubria, Como (Italy); Bassetti, Bruno [Universita degli Studi di Milano, Dip. Fisica, Via Celoria 16, 20133 Milano (Italy); Dorfman, Kevin D [Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, MN 55455 (United States); Scolari, Vittore F; Lagomarsino, Marco Cosentino [CNRS, UMR 7238 ' Microorganism Genomics' , Genomic Physics Group (France); Bromek, Krystyna; Cicuta, Pietro [Cavendish Laboratory, University of Cambridge, Cambridge CB3 0HE (United Kingdom)

2012-07-15

Recent experimental and theoretical approaches have attempted to quantify the physical organization (compaction and geometry) of the bacterial chromosome with its complement of proteins (the nucleoid). The genomic DNA exists in a complex and dynamic protein-rich state, which is highly organized at various length scales. This has implications for modulating (when not directly enabling) the core biological processes of replication, transcription and segregation. We overview the progress in this area, driven in the last few years by new scientific ideas and new interdisciplinary experimental techniques, ranging from high space- and time-resolution microscopy to high-throughput genomics employing sequencing to map different aspects of the nucleoid-related interactome. The aim of this review is to present the wide spectrum of experimental and theoretical findings coherently, from a physics viewpoint. In particular, we highlight the role that statistical and soft condensed matter physics play in describing this system of fundamental biological importance, specifically reviewing classic and more modern tools from the theory of polymers. We also discuss some attempts toward unifying interpretations of the current results, pointing to possible directions for future investigation. (review article)

Physical biological coupling in the Pearl River Estuary

Science.gov (United States)

Harrison, Paul J.; Yin, Kedong; Lee, J. H. W.; Gan, Jianping; Liu, Hongbin

2008-07-01

The Pearl River Estuary is a subtropical estuary and the second largest in China based on discharge volume from the Pearl River. Processes in the estuary vary spatially and temporally (wet vs dry season). In the dry season at the head of the estuary, hypoxic and nearly anoxic conditions occur and NH 4 reaches >600 μM, NO 3 is ˜300 μM and nitrite is ˜60 μM indicating that nitrification and denitrification may be important dry season processes in the region extending 40 km upstream of the Humen outlet. There are very few biological studies conducted in this upper section of the estuary in either the dry or wet seasons and hence there is a need for further research in this region of the river. In the wet season, the salinity wedge extends to the Hongqimen outlet and oxygen is low (35-80% saturation). Nitrate is ˜100 μM, silicate ˜140 μM; and phosphate is relatively low at ˜0.5 μM, yielding an N:P ratio up to ˜200:1 in summer. Nutrients decrease in the lower estuary and primary productivity may become potentially P-limited. Eutrophication is not as severe as one would expect from the nutrient inputs from the Pearl River and from Hong Kong's sewage discharge. This estuary shows a remarkable capacity to cope with excessive nutrients. Physical processes such as river discharge, tidal flushing, turbulent dispersion, wind-induced mixing, and estuarine circulation play an important role in controlling the production and accumulation of algal blooms and the potential occurrence of hypoxia. Superimposed on the physical processes of the estuary are the chemical and biological processes involved in the production of the bloom. For example, the 100N:1P ratio indicates that P potentially limits the amount of algal biomass (and potential biological oxygen demand) in summer. While extended periods of hypoxia are rare in Hong Kong waters, episodic events have been reported to occur during late summer due to factors such as low wind, high rainfall and river discharge which

Radiation physics, biophysics and radiation biology. Progress report, October 1, 1980-September 30, 1981

International Nuclear Information System (INIS)

1981-07-01

Separate abstracts were prepared for the 29 papers in this progress report which deal with radiobiological physics, the biological effects of ionizing radiations, and the modification of these effects by chemical and pharmacological agents

The universal numbers. From Biology to Physics.

Science.gov (United States)

Marchal, Bruno

2015-12-01

I will explain how the mathematicians have discovered the universal numbers, or abstract computer, and I will explain some abstract biology, mainly self-reproduction and embryogenesis. Then I will explain how and why, and in which sense, some of those numbers can dream and why their dreams can glue together and must, when we assume computationalism in cognitive science, generate a phenomenological physics, as part of a larger phenomenological theology (in the sense of the greek theologians). The title should have been "From Biology to Physics, through the Phenomenological Theology of the Universal Numbers", if that was not too long for a title. The theology will consist mainly, like in some (neo)platonist greek-indian-chinese tradition, in the truth about numbers' relative relations, with each others, and with themselves. The main difference between Aristotle and Plato is that Aristotle (especially in its common and modern christian interpretation) makes reality WYSIWYG (What you see is what you get: reality is what we observe, measure, i.e. the natural material physical science) where for Plato and the (rational) mystics, what we see might be only the shadow or the border of something else, which might be non physical (mathematical, arithmetical, theological, …). Since Gödel, we know that Truth, even just the Arithmetical Truth, is vastly bigger than what the machine can rationally justify. Yet, with Church's thesis, and the mechanizability of the diagonalizations involved, machines can apprehend this and can justify their limitations, and get some sense of what might be true beyond what they can prove or justify rationally. Indeed, the incompleteness phenomenon introduces a gap between what is provable by some machine and what is true about that machine, and, as Gödel saw already in 1931, the existence of that gap is accessible to the machine itself, once it is has enough provability abilities. Incompleteness separates truth and provable, and machines can

Natural physical and biological processes compromise the long-term performance of compacted soil caps

International Nuclear Information System (INIS)

Smith, E.D.

1995-01-01

Compacted soil barriers are components of essentially all caps placed on closed waste disposal sites. The intended functions of soil barriers in waste facility caps include restricting infiltration of water and release of gases and vapors, either independently or in combination with synthetic membrane barriers, and protecting other manmade or natural barrier components. Review of the performance of installed soil barriers and of natural processes affecting their performance indicates that compacted soil caps may function effectively for relatively short periods (years to decades), but natural physical and biological processes can be expected to cause them to fail in the long term (decades to centuries). This paper addresses natural physical and biological processes that compromise the performance of compacted soil caps and suggests measures that may reduce the adverse consequences of these natural failure mechanisms

Biological vs. physical mixing effects on benthic food web dynamics.

Directory of Open Access Journals (Sweden)

Ulrike Braeckman

Full Text Available Biological particle mixing (bioturbation and solute transfer (bio-irrigation contribute extensively to ecosystem functioning in sediments where physical mixing is low. Macrobenthos transports oxygen and organic matter deeper into the sediment, thereby likely providing favourable niches to lower trophic levels (i.e., smaller benthic animals such as meiofauna and bacteria and thus stimulating mineralisation. Whether this biological transport facilitates fresh organic matter assimilation by the metazoan lower part of the food web through niche establishment (i.e., ecosystem engineering or rather deprives them from food sources, is so far unclear. We investigated the effects of the ecosystem engineers Lanice conchilega (bio-irrigator and Abra alba (bioturbator compared to abiotic physical mixing events on survival and food uptake of nematodes after a simulated phytoplankton bloom. The (13C labelled diatom Skeletonema costatum was added to 4 treatments: (1 microcosms containing the bioturbator, (2 microcosms containing the bio-irrigator, (3 control microcosms and (4 microcosms with abiotic manual surface mixing. Nematode survival and subsurface peaks in nematode density profiles were most pronounced in the bio-irrigator treatment. However, nematode specific uptake (Δδ(13C of the added diatoms was highest in the physical mixing treatment, where macrobenthos was absent and the diatom (13C was homogenised. Overall, nematodes fed preferentially on bulk sedimentary organic material rather than the added diatoms. The total C budget (µg C m(-2, which included TO(13C remaining in the sediment, respiration, nematode and macrobenthic uptake, highlighted the limited assimilation by the metazoan benthos and the major role of bacterial respiration. In summary, bioturbation and especially bio-irrigation facilitated the lower trophic levels mainly over the long-term through niche establishment. Since the freshly added diatoms represented only a limited food

Non-ionizing radiations : physical characteristics, biological effects and health hazard assessment

International Nuclear Information System (INIS)

Repacholi, M.H.

1988-01-01

The Workshop was a project of the International Non-Ionizing Radiation Committee of IRPA and comprised a series of educational lectures and demonstrations intended to give a comprehensive overview of non-ionizing electromagnetic radiation: physical characteristics, sources of concern, levels of exposure, mechanisms of interaction and reported effects of these fields and radiations with biological tissues, human studies, health risk assessment, national and international standards and guidelines, and protective measures

Marriages of mathematics and physics: A challenge for biology.

Science.gov (United States)

Islami, Arezoo; Longo, Giuseppe

2017-12-01

The human attempts to access, measure and organize physical phenomena have led to a manifold construction of mathematical and physical spaces. We will survey the evolution of geometries from Euclid to the Algebraic Geometry of the 20th century. The role of Persian/Arabic Algebra in this transition and its Western symbolic development is emphasized. In this relation, we will also discuss changes in the ontological attitudes toward mathematics and its applications. Historically, the encounter of geometric and algebraic perspectives enriched the mathematical practices and their foundations. Yet, the collapse of Euclidean certitudes, of over 2300 years, and the crisis in the mathematical analysis of the 19th century, led to the exclusion of "geometric judgments" from the foundations of Mathematics. After the success and the limits of the logico-formal analysis, it is necessary to broaden our foundational tools and re-examine the interactions with natural sciences. In particular, the way the geometric and algebraic approaches organize knowledge is analyzed as a cross-disciplinary and cross-cultural issue and will be examined in Mathematical Physics and Biology. We finally discuss how the current notions of mathematical (phase) "space" should be revisited for the purposes of life sciences. Copyright © 2017. Published by Elsevier Ltd.

The biology and polymer physics underlying large-scale chromosome organization.

Science.gov (United States)

Sazer, Shelley; Schiessel, Helmut

2018-02-01

Chromosome large-scale organization is a beautiful example of the interplay between physics and biology. DNA molecules are polymers and thus belong to the class of molecules for which physicists have developed models and formulated testable hypotheses to understand their arrangement and dynamic properties in solution, based on the principles of polymer physics. Biologists documented and discovered the biochemical basis for the structure, function and dynamic spatial organization of chromosomes in cells. The underlying principles of chromosome organization have recently been revealed in unprecedented detail using high-resolution chromosome capture technology that can simultaneously detect chromosome contact sites throughout the genome. These independent lines of investigation have now converged on a model in which DNA loops, generated by the loop extrusion mechanism, are the basic organizational and functional units of the chromosome. © 2017 The Authors. Traffic published by John Wiley & Sons Ltd.

Environmental parameters of the Tennessee River in Alabama. 2: Physical, chemical, and biological parameters. [biological and chemical effects of thermal pollution from nuclear power plants on water quality

Science.gov (United States)

Rosing, L. M.

1976-01-01

Physical, chemical and biological water quality data from five sites in the Tennessee River, two in Guntersville Reservoir and three in Wheeler Reservoir were correlated with climatological data for three annual cycles. Two of the annual cycles are for the years prior to the Browns Ferry Nuclear Power Plant operations and one is for the first 14 months of Plant operations. A comparison of the results of the annual cycles indicates that two distinct physical conditions in the reservoirs occur, one during the warm months when the reservoirs are at capacity and one during the colder winter months when the reservoirs have been drawn-down for water storage during the rainy months and for weed control. The wide variations of physical and chemical parameters to which the biological organisms are subjected on an annual basis control the biological organisms and their population levels. A comparison of the parameters of the site below the Power plant indicates that the heated effluent from the plant operating with two of the three reactors has not had any effect on the organisms at this site. Recommendations given include the development of prediction mathematical models (statistical analysis) for the physical and chemical parameters under specific climatological conditions which affect biological organisms. Tabulated data of chemical analysis of water and organism populations studied is given.

Estuary-ocean connectivity: fast physics, slow biology.

Science.gov (United States)

Raimonet, Mélanie; Cloern, James E

2017-06-01

Estuaries are connected to both land and ocean so their physical, chemical, and biological dynamics are influenced by climate patterns over watersheds and ocean basins. We explored climate-driven oceanic variability as a source of estuarine variability by comparing monthly time series of temperature and chlorophyll-a inside San Francisco Bay with those in adjacent shelf waters of the California Current System (CCS) that are strongly responsive to wind-driven upwelling. Monthly temperature fluctuations inside and outside the Bay were synchronous, but their correlations weakened with distance from the ocean. These results illustrate how variability of coastal water temperature (and associated properties such as nitrate and oxygen) propagates into estuaries through fast water exchanges that dissipate along the estuary. Unexpectedly, there was no correlation between monthly chlorophyll-a variability inside and outside the Bay. However, at the annual scale Bay chlorophyll-a was significantly correlated with the Spring Transition Index (STI) that sets biological production supporting fish recruitment in the CCS. Wind forcing of the CCS shifted in the late 1990s when the STI advanced 40 days. This shift was followed, with lags of 1-3 years, by 3- to 19-fold increased abundances of five ocean-produced demersal fish and crustaceans and 2.5-fold increase of summer chlorophyll-a in the Bay. These changes reflect a slow biological process of estuary-ocean connectivity operating through the immigration of fish and crustaceans that prey on bivalves, reduce their grazing pressure, and allow phytoplankton biomass to build. We identified clear signals of climate-mediated oceanic variability in this estuary and discovered that the response patterns vary with the process of connectivity and the timescale of ocean variability. This result has important implications for managing nutrient inputs to estuaries connected to upwelling systems, and for assessing their responses to changing

Oceanography at coastal scales: Introduction to the special issue on results from the EU FP7 FIELD_AC project

Science.gov (United States)

Sánchez-Arcilla, Agustín; Wolf, Judith; Monbaliu, Jaak

2014-09-01

The high-resolution and coupled forecasting of wind, waves and currents, in restricted coastal domains, offer a number of important challenges; these limit the quality of predictions, in the present state-of-the-art. This paper presents the main results obtained for such coastal domains, with reference to a variety of modelling suites and observing networks for: a) Liverpool Bay; b) German Bight; c) Gulf of Venice; and d) the Catalan coast. All of these areas are restricted domains, where boundary effects play a significant role in the resulting inner dynamics. This contribution addresses also the themes of the other papers in this Special Issue, ranging from observations to simulations. Emphasis is placed upon the physics controlling such restricted areas. The text deals also with the transfer to end-users and other interested parties, since the requirements on resolution, accuracy and robustness must be linked to their applications. Finally, some remarks are included on the way forward for coastal oceanography and the synergetic combination of in-situ and remote measurements, with high-resolution 3D simulations.

Temperature, salinity and oxygen data collected from the Oden in the Amundsen and Ross Seas, 2010 - 2011 (NCEI Accession 0104260)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Data were collected to investigate the physical oceanography of the Amundsen and Ross Seas. Funded under the following projects: Physical Oceanography of the...

Shifting to structures in physics and biology: a prophylactic for promiscuous realism.

Science.gov (United States)

French, Steven

2011-06-01

Within the philosophy of science, the realism debate has been revitalised by the development of forms of structural realism. These urge a shift in focus from the object oriented ontologies that come and go through the history of science to the structures that remain through theory change. Such views have typically been elaborated in the context of theories of physics and are motivated by, first of all, the presence within such theories of mathematical equations that allow straightforward representation of the relevant structures; and secondly, the implications of such theories for the individuality and identity of putative objects. My aim in this paper is to explore the possibility of extending such views to biological theories. An obvious concern is that within the context of the latter it is typically insisted that we cannot find the kinds of highly mathematised structures that structural realism can point to in physics. I shall indicate how the model-theoretic approach to theories might help allay such concerns. Furthermore, issues of identity and individuality also arise within biology. Thus Dupré has recently noted that there exists a 'General Problem of Biological Individuality' which relates to the issue of how one divides 'massively integrated and interconnected' systems into discrete components. In response Dupré advocates a form of 'Promiscuous Realism' that holds, for example, that there is no unique way of dividing the phylogenetic tree into kinds. Instead I shall urge serious consideration of those aspects of the work of Dupré and others that lean towards a structuralist interpretation. By doing so I hope to suggest possible ways in which a structuralist stance might be extended to biology. Copyright © 2010 Elsevier Ltd. All rights reserved.

Dynamic light scattering with applications to chemistry, biology, and physics

CERN Document Server

Berne, Bruce J

2000-01-01

Lasers play an increasingly important role in a variety of detection techniques, making inelastic light scattering a tool of growing value in the investigation of dynamic and structural problems in chemistry, biology, and physics. Until the initial publication of this work, however, no monograph treated the principles behind current developments in the field.This volume presents a comprehensive introduction to the principles underlying laser light scattering, focusing on the time dependence of fluctuations in fluid systems; it also serves as an introduction to the theory of time correlation f

Archive of Geosample Data and Information from the University of Rhode Island (URI) Graduate School of Oceanography (GSO), Marine Geological Samples Laboratory (MGSL)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Marine Geological Samples Laboratory (MGSL) of the Graduate School of Oceanography (GSO), University of Rhode Island is a partner in the Index to Marine and...

Living matter—nexus of physics and biology in the 21st century

Science.gov (United States)

Gardel, Margaret L.

2012-01-01

Cells are made up of complex assemblies of cytoskeletal proteins that facilitate force transmission from the molecular to cellular scale to regulate cell shape and force generation. The “living matter” formed by the cytoskeleton facilitates versatile and robust behaviors of cells, including their migration, adhesion, division, and morphology, that ultimately determine tissue architecture and mechanics. Elucidating the underlying physical principles of such living matter provides great opportunities in both biology and physics. For physicists, the cytoskeleton provides an exceptional toolbox to study materials far from equilibrium. For biologists, these studies will provide new understanding of how molecular-scale processes determine cell morphological changes. PMID:23112229

Vertical stratification of physical, chemical and biological components in two saline lakes Shira and Shunet (South Siberia, Russia)

NARCIS (Netherlands)

Degermendzhy, A.G.; Zadereev, E.S.; Rogozin, D.Y.; Prokopkin, I.; Barkhatov, Y.V.; Tolomeev, A.; Khromechek, E.B.; Janse, J.H.; Mooij, W.M.; Gulati, R.D.

2010-01-01

A feature of meromictic lakes is that several physicochemical and biological gradients affect the vertical distribution of different organisms. The vertical stratification of physical, chemical and biological components in saline, fishless meromictic lakes Shira and Shunet (Siberia, Russia) is quite

Evaluation of conformal radiotherapy techniques through physics and biologic criteria

International Nuclear Information System (INIS)

Bloch, Jonatas Carrero

2012-01-01

In the fight against cancer, different irradiation techniques have been developed based on technological advances and aiming to optimize the elimination of tumor cells with the lowest damage to healthy tissues. The radiotherapy planning goal is to establish irradiation technical parameters in order to achieve the prescribed dose distribution over the treatment volumes. While dose prescription is based on radiosensitivity of the irradiated tissues, the physical calculations on treatment planning take into account dosimetric parameters related to the radiation beam and the physical characteristics of the irradiated tissues. To incorporate tissue's radiosensitivity into radiotherapy planning calculations can help particularize treatments and establish criteria to compare and elect radiation techniques, contributing to the tumor control and the success of the treatment. Accordingly, biological models of cellular response to radiation have to be well established. This work aimed to study the applicability of using biological models in radiotherapy planning calculations to aid evaluating radiotherapy techniques. Tumor control probability (TCP) was studied for two formulations of the linear-quadratic model, with and without repopulation, as a function of planning parameters, as dose per fraction, and of radiobiological parameters, as the α/β ratio. Besides, the usage of biological criteria to compare radiotherapy techniques was tested using a prostate planning simulated with Monte Carlo code PENELOPE. Afterwards, prostate planning for five patients from the Hospital das Clinicas da Faculdade de Medicina de Ribeirao Preto, USP, using three different techniques were compared using the tumor control probability. In that order, dose matrices from the XiO treatment planning system were converted to TCP distributions and TCP-volume histograms. The studies performed allow the conclusions that radiobiological parameters can significantly influence tumor control

Bacterial Siderophores and their Biotechnological applications

Digital Repository Service at National Institute of Oceanography (India)

Mohandass, C.

Siderophores and their Biotechnological applications C. Mohandass Biological Oceanography Division National Institute of Oceanography Dona-paula, Goa.403 004.India. Introduction Siderophore is the Greek phrase for ?iron bearer? and is applied to molecules... the efficiency of the biological carbon pump. Phytoplankton must have developed a sophisticated mechanism to uptake iron. However, little is known about the uptake mechanism. Given the importance of the biological pump in controlling atmospheric CO2, elucidating...

Studies on methanogenic consortia associated with mangrove sediments of Ennore.

Digital Repository Service at National Institute of Oceanography (India)

Ahila, N.K.; Kannapiran, E.; Ravindran, J.; Ramkumar, V.S.

page : www.jeb.co.in « E-mail : editor@jeb.co.in Journal of Environmental Biology, Vol. 35, 649-654, July 2014© Triveni Enterprises, Lucknow (India) Journal of Environmental Biology ISSN: 0254-8704 CODEN: JEBIDP Introduction Mangroves are complex...-National Institute of Oceanography, Biological Oceanography Division, Dona Paula, Goa – 403 004, India Abstract Key words In this study, methanogenic consortia were isolated and characterized from eight different sediment samples of mangrove ecosystem located...

Radiation damage and repair in cells and cell components. Part 2. Physical radiations and biological significance. Final report

International Nuclear Information System (INIS)

Fluke, D.J.

1984-08-01

The report comprises a teaching text, encompassing all physical radiations likely to be of biological interest, and the relevant biological effects and their significance. Topics include human radiobiology, delayed effects, radiation absorption in organisms, aqueous radiation chemistry, cell radiobiology, mutagenesis, and photobiology

Biological and physical controls in the Southern Ocean on past millennial-scale atmospheric CO2 changes.

Science.gov (United States)

Gottschalk, Julia; Skinner, Luke C; Lippold, Jörg; Vogel, Hendrik; Frank, Norbert; Jaccard, Samuel L; Waelbroeck, Claire

2016-05-17

Millennial-scale climate changes during the last glacial period and deglaciation were accompanied by rapid changes in atmospheric CO2 that remain unexplained. While the role of the Southern Ocean as a 'control valve' on ocean-atmosphere CO2 exchange has been emphasized, the exact nature of this role, in particular the relative contributions of physical (for example, ocean dynamics and air-sea gas exchange) versus biological processes (for example, export productivity), remains poorly constrained. Here we combine reconstructions of bottom-water [O2], export production and (14)C ventilation ages in the sub-Antarctic Atlantic, and show that atmospheric CO2 pulses during the last glacial- and deglacial periods were consistently accompanied by decreases in the biological export of carbon and increases in deep-ocean ventilation via southern-sourced water masses. These findings demonstrate how the Southern Ocean's 'organic carbon pump' has exerted a tight control on atmospheric CO2, and thus global climate, specifically via a synergy of both physical and biological processes.

Meta-cognition about biological sex and gender-stereotypic physical appearance: consequences for the assessment of leadership competence.

Science.gov (United States)

Sczesny, Sabine; Kühnen, Ulrich

2004-01-01

Previous findings are inconsistent with regard to whether men are judged as being more or less competent leaders than women. However, masculine-relative to feminine-looking persons seem to be judged consistently as more competent leaders. Can this different impact of biological sex and physical appearance be due to the disparate availability of meta-cognitive knowledge about both sources? The results of Study 1 indicated that individuals possess meta-cognitive knowledge about a possible biasing influence of persons' biological sex, but not for their physical appearance. In Study 2, participants judged the leadership competence of a male versus female stimulus person with either masculine or feminine physical appearance. In addition, the available cognitive capacity was manipulated. When high capacity was available, participants corrected for the influence of stimulus persons' sex, but they fell prey to this influence under cognitive load. However, the effect of physical appearance was not moderated by cognitive capacity.

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African Journals Online (AJOL)

USER

2016-01-23

Jan 23, 2016 ... Biological Oceanography Department, Nigerian Institute for Oceanography and .... Four active juvenile of O. niloticus of ..... many cigarette additives are carcinogenic to humans, it may follow that they .... Nutrition, 4: 135-141.

Summer nitrogenous nutrient transport and its fate in the Taiwan Strait: A coupled physical-biological modeling approach

Science.gov (United States)

Wang, Jia; Hong, Huasheng; Jiang, Yuwu; Chai, Fei; Yan, Xiao-Hai

2013-09-01

In order to understand the fate of nutrients in the Taiwan Strait during summer, we built a coupled physical-biological numerical ocean model, which can capture the basic hydrographic and biological features within the strait. The nutrient that we chose to model is dissolved inorganic nitrogen (DIN). The model includes individual reservoirs for nitrate (NO3) and ammonium (NH4). Both the observational evidence and model results show that NO3 in the strait originates primarily from the upwelling subsurface water in the northern South China Sea (SCS) that enters the strait via the eastern and western routes separated by the Taiwan Bank. The coupled physical and biological effects on the NO3 transport at these two routes are highlighted in the study. For the western route, the shallow topography and the coastal upwelling intensify the biological uptake of NO3 in the whole water column. Consequently, the nitrogenous contribution by this route is mainly in form of the particulate organic nitrogen (PON). In contrast, NO3 is transported conservatively below the nitricline at the deep eastern route, contributing the whole NO3 supply in the TWS. The model estimates the fluxes of DIN and PON into the TWS, from the northern SCS, are 1.8 and 4 kmol s-1, respectively. Over half (˜1 kmol s-1) of the DIN is synthesized into PON by the phytoplankton in the strait. Overall, this study estimates the physical and biological effects on the nutrient transport in the TWS during summer.

Advances in limnological and oceanographic research in Italy: the history of the Italian Association of Limnology and Oceanography (AIOL

Directory of Open Access Journals (Sweden)

Antonio Pusceddu

2010-06-01

Full Text Available On the occasion of the 35th year from the publication of the first issue of the Proceedings of the Italian Association of Limnology and Oceanography (AIOL we present here the results of a meta-analysis of all of the material included in the AIOL Proceedings, with the aim of analysing the last 30 years history of aquatic science in Italy as mirrored by the science presented by the AIOL members. The results of this meta-analysis were presented in September 2006 in Paris, on the occasion of the 100th anniversary of the ‘Institut oce´anographique, fondation Albert Ier, prince de Monaco’. We have screened the 17 volumes of the Proceedings and classified the articles into papers dealing with: (i Biology and Ecology; (ii Chemistry; (iii Physics, and (iv Geology, which represent the most relevant ‘disciplines’ of the AIOL. The articles were also classified as ‘oceanographic’ or ‘limnological’ papers, including all marine and freshwater aspects, respectively. Articles were finally classified on the basis of the environment where the studies were carried out: the water column or the benthic environment. The results of this analysis highlight the presence of wide fluctuations in the number of publications produced by the AIOL scientific community during more then three decades of the activity of the association in Italy. We also show that these fluctuations were associated with variable fluctuations in the availability of funding for aquatic research. The overall picture of the scientific outputs of the AIOL members as revealed by the analysis of the papers published on the AIOL Proceedings indicates that the Association had a fruitful activity during the last part of the past century, but experienced a major flaw during the first years of this century. Only in the last few years such activity restarted, thus giving rise to a possible new deal in the development of aquatic science in Italy.

Teleology in biology, chemistry and physics education: what primary teachers should know

Directory of Open Access Journals (Sweden)

KOSTAS KAMPOURAKIS

2007-01-01

Full Text Available Recent research in cognitive psychology suggests that children develop intuitions that may clash with what is accepted by scientists, thus making certain scientific concepts difficult to understand. Children possess intuitions about design and purpose that make them provide teleological explanations to many different sorts of tasks. One possible explanation for the origin of the bias to view objects as made for something derives from an early sensitivity to intentional agents and to their behavior as intentional object users and object makers. What is important is that teleological explanations may not be exclusively restricted in biological phenomena, as commonly assumed. Consequently, primary school teachers should take that into account when teaching biology, chemistry or physics concepts and try to refrain from enforcing students’ teleological intuitions.

Physical Activity and Telomere Biology: Exploring the Link with Aging-Related Disease Prevention

Directory of Open Access Journals (Sweden)

Andrew T. Ludlow

2011-01-01

Full Text Available Physical activity is associated with reduced risk of several age-related diseases as well as with increased longevity in both rodents and humans. Though these associations are well established, evidence of the molecular and cellular factors associated with reduced disease risk and increased longevity resulting from physical activity is sparse. A long-standing hypothesis of aging is the telomere hypothesis: as a cell divides, telomeres shorten resulting eventually in replicative senescence and an aged phenotype. Several reports have recently associated telomeres and telomere-related proteins to diseases associated with physical inactivity and aging including cardiovascular disease, insulin resistance, and hypertension. Interestingly several reports have also shown that longer telomeres are associated with higher physical activity levels, indicating a potential mechanistic link between physical activity, reduced age-related disease risk, and longevity. The primary purpose of this review is to discuss the potential importance of physical activity in telomere biology in the context of inactivity- and age-related diseases. A secondary purpose is to explore potential mechanisms and important avenues for future research in the field of telomeres and diseases associated with physical inactivity and aging.

Courses in Modern Physics for Non-science Majors, Future Science Teachers, and Biology Students

Science.gov (United States)

Zollman, Dean

2001-03-01

For the past 15 years Kansas State University has offered a course in modern physics for students who are not majoring in physics. This course carries a prerequisite of one physics course so that the students have a basic introduction in classical topics. The majors of students range from liberal arts to engineering. Future secondary science teachers whose first area of teaching is not physics can use the course as part of their study of science. The course has evolved from a lecture format to one which is highly interactive and uses a combination of hands-on activities, tutorials and visualizations, particularly the Visual Quantum Mechanics materials. Another course encourages biology students to continue their physics learning beyond the introductory course. Modern Miracle Medical Machines introduces the basic physics which underlie diagnosis techniques such as MRI and PET and laser surgical techniques. Additional information is available at http://www.phys.ksu.edu/perg/

Advantages and challenges of using physics curricula as a model for reforming an undergraduate biology course.

Science.gov (United States)

Donovan, D A; Atkins, L J; Salter, I Y; Gallagher, D J; Kratz, R F; Rousseau, J V; Nelson, G D

2013-06-01

We report on the development of a life sciences curriculum, targeted to undergraduate students, which was modeled after a commercially available physics curriculum and based on aspects of how people learn. Our paper describes the collaborative development process and necessary modifications required to apply a physics pedagogical model in a life sciences context. While some approaches were easily adapted, others provided significant challenges. Among these challenges were: representations of energy, introducing definitions, the placement of Scientists' Ideas, and the replicability of data. In modifying the curriculum to address these challenges, we have come to see them as speaking to deeper differences between the disciplines, namely that introductory physics--for example, Newton's laws, magnetism, light--is a science of pairwise interaction, while introductory biology--for example, photosynthesis, evolution, cycling of matter in ecosystems--is a science of linked processes, and we suggest that this is how the two disciplines are presented in introductory classes. We illustrate this tension through an analysis of our adaptations of the physics curriculum for instruction on the cycling of matter and energy; we show that modifications of the physics curriculum to address the biological framework promotes strong gains in student understanding of these topics, as evidenced by analysis of student work.

Open Water Processes of the San Francisco Estuary: From Physical Forcing to Biological Responses

Directory of Open Access Journals (Sweden)

Wim Kimmerer

2004-02-01

Full Text Available This paper reviews the current state of knowledge of the open waters of the San Francisco Estuary. This estuary is well known for the extent to which it has been altered through loss of wetlands, changes in hydrography, and the introduction of chemical and biological contaminants. It is also one of the most studied estuaries in the world, with much of the recent research effort aimed at supporting restoration efforts. In this review I emphasize the conceptual foundations for our current understanding of estuarine dynamics, particularly those aspects relevant to restoration. Several themes run throughout this paper. First is the critical role physical dynamics play in setting the stage for chemical and biological responses. Physical forcing by the tides and by variation in freshwater input combine to control the movement of the salinity field, and to establish stratification, mixing, and dilution patterns throughout the estuary. Many aspects of estuarine dynamics respond to interannual variation in freshwater flow; in particular, abundance of several estuarine-dependent species of fish and shrimp varies positively with flow, although the mechanisms behind these relationships are largely unknown. The second theme is the importance of time scales in determining the degree of interaction between dynamic processes. Physical effects tend to dominate when they operate at shorter time scales than biological processes; when the two time scales are similar, important interactions can arise between physical and biological variability. These interactions can be seen, for example, in the response of phytoplankton blooms, with characteristic time scales of days, to stratification events occurring during neap tides. The third theme is the key role of introduced species in all estuarine habitats; particularly noteworthy are introduced waterweeds and fishes in the tidal freshwater reaches of the estuary, and introduced clams there and in brackish water. The

Extremophilic microbes: Diversity and perspectives

Digital Repository Service at National Institute of Oceanography (India)

Satyanarayana, T.; Raghukumar, C.; Shivaji, S.

variety of high temperature, natural and man - made habitats exist. These include volcanic and geothermal areas with te m peratures o f ten greater than boiling, sun - heated litter and soil or sediments reaching 70 ?C, and biological self - heated... Department of Microbiology, University of Delhi South Campus, New Delhi 110 021, India 2 Biological Oceanography Division, National Institute of Oceanography, Dona Paula, Goa 403 004, India 3 Centre for Cellular and Molecular Biology, Uppal Road...

Life sciences: Nuclear medicine, radiation biology, medical physics, 1980-1994. International Atomic Energy Agency Publications

International Nuclear Information System (INIS)

1994-11-01

The catalogue lists all sales publications of the IAEA dealing with Life Sciences issued during the period 1980-1994. The publications are grouped in the following chapters: Nuclear Medicine (including Radiopharmaceuticals), Radiation Biology and Medical Physics (including Dosimetry)

Microgravity Fluids for Biology, Workshop

Science.gov (United States)

Griffin, DeVon; Kohl, Fred; Massa, Gioia D.; Motil, Brian; Parsons-Wingerter, Patricia; Quincy, Charles; Sato, Kevin; Singh, Bhim; Smith, Jeffrey D.; Wheeler, Raymond M.

2013-01-01

Microgravity Fluids for Biology represents an intersection of biology and fluid physics that present exciting research challenges to the Space Life and Physical Sciences Division. Solving and managing the transport processes and fluid mechanics in physiological and biological systems and processes are essential for future space exploration and colonization of space by humans. Adequate understanding of the underlying fluid physics and transport mechanisms will provide new, necessary insights and technologies for analyzing and designing biological systems critical to NASAs mission. To enable this mission, the fluid physics discipline needs to work to enhance the understanding of the influence of gravity on the scales and types of fluids (i.e., non-Newtonian) important to biology and life sciences. In turn, biomimetic, bio-inspired and synthetic biology applications based on physiology and biology can enrich the fluid mechanics and transport phenomena capabilities of the microgravity fluid physics community.

Nitrogen Retention in Coastal Marine Sediments—a Field Study of the Relative Importance of Biological and Physical Removal in a Danish Estuary

DEFF Research Database (Denmark)

Laurentius Nielsen, Søren; Risgaard-Petersen, Nils; Banta, Gary

2017-01-01

The aim of this study was to elucidate the relative importance of physical versus biological loss processes for the removal of microphytobenthic (MPB) bound nitrogen in a coastal environment at different times of the year via a dual isotope labeling technique. We used 51Cr, binding to inorganic...... were able to discern the relative importance of physical and biological processes. The isotope marking was supplemented with measurements of sediment chlorophyll biomass and oxygen fluxes, allowing us to evaluate MPB biomass as well as primary production vs. respiration in the sediment. In spring...... was physically dominated due to low MPB biomasses and activity combined with a significant storm event. Our data support the hypothesis that the relative balance between physical and biological processes in determining retention and removal of MPB-bound nitrogen changes seasonally....

Recovery of deep-sea meiofauna after artificial disturbance in the Central Indian Basin

Digital Repository Service at National Institute of Oceanography (India)

Ingole, B.S.; Goltekar, N.R.; Gonsalves, S.; Ansari, Z.A.

-1 1 Recovery of Deep-sea Meiofauna after Artificial Disturbance in the Central Indian Basin INGOLE B.S*., R. GOLTEKAR, S. GONSALVES and Z. A. ANSARI Biological Oceanography Division, National Institute of Oceanography, Dona Paula, Goa; 403004...

Disentangling physical and biological drivers of phytoplankton dynamics in a coastal system.

Science.gov (United States)

Cianelli, Daniela; D'Alelio, Domenico; Uttieri, Marco; Sarno, Diana; Zingone, Adriana; Zambianchi, Enrico; d'Alcalà, Maurizio Ribera

2017-11-20

This proof-of-concept study integrates the surface currents measured by high-frequency coastal radars with plankton time-series data collected at a fixed sampling point from the Mediterranean Sea (MareChiara Long Term Ecological Research site in the Gulf of Naples) to characterize the spatial origin of phytoplankton assemblages and to scrutinize the processes ruling their dynamics. The phytoplankton community generally originated from the coastal waters whereby species succession was mainly regulated by biological factors (life-cycle processes, species-specific physiological performances and inter-specific interactions). Physical factors, e.g. the alternation between coastal and offshore waters and the horizontal mixing, were also important drivers of phytoplankton dynamics promoting diversity maintenance by i) advecting species from offshore and ii) diluting the resident coastal community so as to dampen resource stripping by dominant species and thereby increase the numerical importance of rarer species. Our observations highlight the resilience of coastal communities, which may favour their persistence over time and the prevalence of successional events over small time and space scales. Although coastal systems may act differently from one another, our findings provide a conceptual framework to address physical-biological interactions occurring in coastal basins, which can be generalised to other areas.

A Comparison of Biological and Physical Risk Factors for Cardiovascular Disease in Overweight/Obese Individuals With and Without Prediabetes.

Science.gov (United States)

Liu, Tingting

2017-12-01

Compared with type 2 diabetes, evaluating the direct biological and physical risk factors for cardiovascular disease (CVD) in overweight/obese adults with and without prediabetes is less understood. Therefore, the aim of the study was to compare baseline biological and physical risk factors for CVD among overweight/obese adults with and without prediabetes. A secondary data analysis was performed. Three hundred forty-one overweight/obese participants were included in the analysis. Compared with non-prediabetics, prediabetics had higher fasting blood glucose, body mass index, waist-to-hip ratio, and triglycerides. Prediabetics were also more likely to be insulin resistant than non-prediabetics. Participants with prediabetes had much lower cardiorespiratory fitness than those without prediabetes. Findings from this study suggest that healthy overweight/obese adults with prediabetes were likely at higher biological and physical risk of CVD at baseline compared with those without prediabetes. Early intervention to improve CVD risk progression among persons with prediabetes is essential.

Life as physics and chemistry: A system view of biology.

Science.gov (United States)

Baverstock, Keith

2013-04-01

Cellular life can be viewed as one of many physical natural systems that extract free energy from their environments in the most efficient way, according to fundamental physical laws, and grow until limited by inherent physical constraints. Thus, it can be inferred that it is the efficiency of this process that natural selection acts upon. The consequent emphasis on metabolism, rather than replication, points to a metabolism-first origin of life with the adoption of DNA template replication as a second stage development. This order of events implies a cellular regulatory system that pre-dates the involvement of DNA and might, therefore, be based on the information acquired as peptides fold into proteins, rather than on genetic regulatory networks. Such an epigenetic cell regulatory model, the independent attractor model, has already been proposed to explain the phenomenon of radiation induced genomic instability. Here it is extended to provide an epigenetic basis for the morphological and functional diversity that evolution has yielded, based on natural selection of the most efficient free energy transduction. Empirical evidence which challenges the current genetic basis of cell and molecular biology and which supports the above proposal is discussed. Copyright © 2012 Elsevier Ltd. All rights reserved.

Radiation physics, biophysics, and radiation biology

International Nuclear Information System (INIS)

Hall, E.J.; Zaider, M.; Delegianis, M.J.

1989-07-01

An important event of the year was the designation of our Laboratory as a Center for Radiological Research by the Dean of the Faculty of Medicine and Vice-President for Health Sciences. Center status acknowledges the size and importance of the research efforts in this area, and allows a greater measure of independence in administrative matters. While the name has changed from a Laboratory to a Center within the Medical School, the mission and charge remain the same. The efforts of the Center are a multidisciplinary mix of physics, chemistry, and biology, mostly at a basic level, with the admixture of a small proportion of pragmatic or applied research in support of radiation protection or radiation therapy. About a quarter of our funding, mostly individual research awards, could be regarded as in direct support of radiotherapy, with the remainder (an NCI program project grant and DOE grants) being in support of research addressing more basic issues. An important effort currently underway concerns ab-initio calculations of the dielectric response function of condensed water. This investigation has received the coveted designation, ''Grand Challenge Project,'' awarded by DOE to research work which represents ''distinct advance on a major scientific or engineering problem that is broadly recognized as important within the mission of the Department.''

Quantum Processes and Dynamic Networks in Physical and Biological Systems.

Science.gov (United States)

Dudziak, Martin Joseph

Quantum theory since its earliest formulations in the Copenhagen Interpretation has been difficult to integrate with general relativity and with classical Newtonian physics. There has been traditionally a regard for quantum phenomena as being a limiting case for a natural order that is fundamentally classical except for microscopic extrema where quantum mechanics must be applied, more as a mathematical reconciliation rather than as a description and explanation. Macroscopic sciences including the study of biological neural networks, cellular energy transports and the broad field of non-linear and chaotic systems point to a quantum dimension extending across all scales of measurement and encompassing all of Nature as a fundamentally quantum universe. Theory and observation lead to a number of hypotheses all of which point to dynamic, evolving networks of fundamental or elementary processes as the underlying logico-physical structure (manifestation) in Nature and a strongly quantized dimension to macroscalar processes such as are found in biological, ecological and social systems. The fundamental thesis advanced and presented herein is that quantum phenomena may be the direct consequence of a universe built not from objects and substance but from interacting, interdependent processes collectively operating as sets and networks, giving rise to systems that on microcosmic or macroscopic scales function wholistically and organically, exhibiting non-locality and other non -classical phenomena. The argument is made that such effects as non-locality are not aberrations or departures from the norm but ordinary consequences of the process-network dynamics of Nature. Quantum processes are taken to be the fundamental action-events within Nature; rather than being the exception quantum theory is the rule. The argument is also presented that the study of quantum physics could benefit from the study of selective higher-scale complex systems, such as neural processes in the brain

Biological scaling and physics

Indian Academy of Sciences (India)

Unknown

Conversely, the average life-span, which is inverse to the ... Some find the catchy “life has an added dimension” (West et al ... works argument, which applies even outside biology, has .... While accounting for the (– 1/4) power, the thread of.

Teledetection applied to the superficial oceanography phenomena study

International Nuclear Information System (INIS)

Melo, Jeimmy

2002-01-01

The present document is consider the physical and biological variables important part in the integration of the climatic system, like improvement to the knowledge of the present marine processes in the Colombian marine areas by means of the advantage of the technological resources available at the present time for the obtaining of information in real time of physical and biological processes, agreed to the constitutional mandate of sustainable development. The images of color of the ocean provided by located remote sensors in the satellites allow considering primary the organic productivity of a synoptic way, in great areas. This is of great importance to more effectively support the rational handling of the fishing resources and to make a contribution on the paper of the ocean in the global climatic change. The marine phytoplankton can significantly alter to the carbon interchange in interactions ocean-atmosphere. The marine photosynthesis reduces the partial pressure of superficial water CO 2 , with the result of which a portion of organic carbon just formed (new productivity) sinks outside the afotica zone. The previous thing induces a net effect of carbon flow from the atmosphere to the ocean. One of the potential applications of the use of the images of satellite of color of the ocean is the calculation of the chlorophyll concentration and its relation with the sobreexperience of larvae of fish of commercial interest. Different types from developed mathematical models for concerning oceanic waters in the accomplishment of estimations of primary productivity with base in color images of the ocean exist mainly - time out - for that reason, the necessity of develop model similar for the calculation of the productivity primary of the phytoplankton of the Colombian marine area

Differences in biological maturation, anthropometry and physical performance between playing positions in youth team handball

NARCIS (Netherlands)

Matthys, S.P.; Fransen, J.; Vaeyens, R.; Lenoir, M.; Philippaerts, R.

2013-01-01

It was the goal of this cross-sectional study to examine differences in maturity, anthropometry and physical performance between youth handball players across different playing positions (i.e. goalkeeper, back, pivot and wing). Multivariate analysis of covariance (MANCOVA), accounting for biological

Effects of Physical Exercise on Cognitive Functioning and Wellbeing: Biological and Psychological Benefits

Directory of Open Access Journals (Sweden)

Laura Mandolesi

2018-04-01

Full Text Available Much evidence shows that physical exercise (PE is a strong gene modulator that induces structural and functional changes in the brain, determining enormous benefit on both cognitive functioning and wellbeing. PE is also a protective factor for neurodegeneration. However, it is unclear if such protection is granted through modifications to the biological mechanisms underlying neurodegeneration or through better compensation against attacks. This concise review addresses the biological and psychological positive effects of PE describing the results obtained on brain plasticity and epigenetic mechanisms in animal and human studies, in order to clarify how to maximize the positive effects of PE while avoiding negative consequences, as in the case of exercise addiction.

Biological effectiveness and application of heavy ions in radiation therapy described by a physical and biological model

International Nuclear Information System (INIS)

Olsen, K.J.; Hansen, J.W.

1982-12-01

A description is given of the physical basis for applying track structure theory in the determination of the effectiveness of heavy-ion irradiation of single- and multi-hit target systems. It will be shown that for applying the theory to biological systems the effectiveness of heavy-ion irradiation is inadequately described by an RBE-factor, whereas the complete formulation of the probability of survival must be used, as survival depends on both radiation quality and dose. The theoretical model of track structure can be used in dose-effect calculations for neutron-, high-LET, and low-LET radiation applied simultaneously in therapy. (author)

Proceedings of twelfth ISMAS symposium cum workshop on mass spectrometry

International Nuclear Information System (INIS)

Alamelu, D.; Jaison, P.G.; Aggarwal, S.K.

2007-03-01

Mass Spectrometry is an important analytical tool and has encompassed almost all branches of science and technology including Agricultural, biology, Chemistry, Earth sciences, environment, Forensic Science, Medical Sciences, Hydrology, Nuclear Technology, Oceanography, Physics etc. Recent advancements in the instrumentation of Mass Spectrometry have further strengthened its role for various applications. It is indeed a matter of great pleasure to present this special Issue of ISMAS Bulletin which is brought out on the occasion of the 12th ISMAS Symposium cum Workshop on Mass spectrometry (12th ISMAS-WS 2007) being held at Cidade-de-Goa, Dona Paula, Goa from March 25 to 30, 2007 in association with National Institute of Oceanography, Goa. This Symposium cum Workshop is co-sponsored by Scientific Departments of Government of India. Papers relevant to INIS are indexed separately

Normal mode analysis and applications in biological physics.

Science.gov (United States)

Dykeman, Eric C; Sankey, Otto F

2010-10-27

Normal mode analysis has become a popular and often used theoretical tool in the study of functional motions in enzymes, viruses, and large protein assemblies. The use of normal modes in the study of these motions is often extremely fruitful since many of the functional motions of large proteins can be described using just a few normal modes which are intimately related to the overall structure of the protein. In this review, we present a broad overview of several popular methods used in the study of normal modes in biological physics including continuum elastic theory, the elastic network model, and a new all-atom method, recently developed, which is capable of computing a subset of the low frequency vibrational modes exactly. After a review of the various methods, we present several examples of applications of normal modes in the study of functional motions, with an emphasis on viral capsids.

Physical, biological and clinical basis of light ions using in radiotherapy: EULIMA project

International Nuclear Information System (INIS)

Chauvel, P.

1991-01-01

Improving the efficiency of radiotherapy is a constant concern in oncology: more than half of the patients who contract cancer receive radiotherapy at some stage. Use of charged particles in radiotherapy represents indisputable progress in localization of the dose delivered to tumour masses, thereby allowing reduction of dose received by adjacent healthy tissues. Protons improve the physical selectivity of the irradiation, i.e. the dose distribution. High-LET (Linear Energy Transfer) radiations produce different biological effects, decreasing the differences in radiosensitivity, and allowing radiation therapy to control radioresistant tumours. Fast neutrons represent the most known of these high-LET particles, but they suffer of a relatively poor physical selectivity. The two approaches (physical selectivity and biological advantages) are joined in by light ions (Carbon, Oxygen, Neon). Highly selective high-LET radiation therapy can be performed for radioresistant tumours without damage to healthy tissues. Preliminary results obtained in Berkeley (USA) demonstrate an improved local control of unresectable, slowly growing tumours, confirming what could be extrapolated from proton and neutrontherapy. Furthermore, radioactive light ion beams can be used to verify the accuracy of treatment planning by checking the range of the particle with a PET camera, and in the future for the treatment itself. In the framework of its programme Europe against Cancer, the Commission of the European Communities participates in the funding of the EULIMA (European Light Ion Medical Accelerator) project feasibility study, aiming to design an hospital-based light ion therapy facility in Europe [fr

A Cluster Randomized Controlled Trial on the Effects of Technology-aided Testing and Feedback on Physical Activity and Biological Age Among Employees in a Medium-sized Enterprise.

Science.gov (United States)

Liukkonen, Mika; Nygård, Clas-Håkan; Laukkanen, Raija

2017-12-01

It has been suggested that engaging technology can empower individuals to be more proactive about their health and reduce their health risks. The aim of the present intervention was to study the effects of technology-aided testing and feedback on physical activity and biological age of employees in a middle-sized enterprise. In all, 121 employees (mean age 42 ± 10 years) participated in the 12-month three-arm cluster randomized trial. The fitness measurement process (Body Age) determined the participants' biological age in years. Physical activity was measured with the International Physical Activity Questionnaire Short Form. Physical activity did not change during the intervention. Biological age (better fitness) improved in all groups statistically significantly ( p  physical activity but may enhance physical fitness measured by biological age.

Synthetic biological networks

International Nuclear Information System (INIS)

Archer, Eric; Süel, Gürol M

2013-01-01

Despite their obvious relationship and overlap, the field of physics is blessed with many insightful laws, while such laws are sadly absent in biology. Here we aim to discuss how the rise of a more recent field known as synthetic biology may allow us to more directly test hypotheses regarding the possible design principles of natural biological networks and systems. In particular, this review focuses on synthetic gene regulatory networks engineered to perform specific functions or exhibit particular dynamic behaviors. Advances in synthetic biology may set the stage to uncover the relationship of potential biological principles to those developed in physics. (review article)

Annual Report of the Assembly of Mathematical and Physical Sciences for Calendar Year 1978 (January 1, 1978 - December 31, 1978).

Science.gov (United States)

1978-01-01

Colin B. Bull (1980) College of Mathematical and Physical Bruce A. Taft (1981) Science Department of Oceanography Ohio State University Washington...Gottschalk, Joseph Kestin (1981) and Richard W. Kline Division of Engineering Department of Energy Brown University (Engineering) Harold E. Bamford ...Research and Engineering (Climate dynamics, international Laboratory cooperation) (Arctic ecology, soil science) George Gryc (1981) Colin B. Bull (1980

Predicting Salmonella populations from biological, chemical, and physical indicators in Florida surface waters.

Science.gov (United States)

McEgan, Rachel; Mootian, Gabriel; Goodridge, Lawrence D; Schaffner, Donald W; Danyluk, Michelle D

2013-07-01

Coliforms, Escherichia coli, and various physicochemical water characteristics have been suggested as indicators of microbial water quality or index organisms for pathogen populations. The relationship between the presence and/or concentration of Salmonella and biological, physical, or chemical indicators in Central Florida surface water samples over 12 consecutive months was explored. Samples were taken monthly for 12 months from 18 locations throughout Central Florida (n = 202). Air and water temperature, pH, oxidation-reduction potential (ORP), turbidity, and conductivity were measured. Weather data were obtained from nearby weather stations. Aerobic plate counts and most probable numbers (MPN) for Salmonella, E. coli, and coliforms were performed. Weak linear relationships existed between biological indicators (E. coli/coliforms) and Salmonella levels (R(2) Florida surface water through logistic regression.

The Hanford Nuclear Reservation (1943-1987): a case study of the interface between physics and biology during the cold war

Energy Technology Data Exchange (ETDEWEB)

Macuglia, Daniele [Fishbein Center for the History of Science and Medicine, University of Chicago, IL (United States)

2011-07-01

During its active period (1943-1987) the Hanford Nuclear Reservation shaped the history of US nuclear research. It also constitutes an interesting case study of the interface between physics, biology and the politics of Cold War society. Although supposed to turn the US into a stronger military force during the Cold War, the remarkable biological consequences of the nuclear research carried out in the facility ended up overshadowing its original political purpose. The high-level of radioactive waste harmed thousands of people living in the area, causing relevant environmental disasters which make the site the most contaminated area in the US even today. Nuclear research is uniquely dangerous since radiation can cause severe consequences both in terms of lives injured and environmental damage. I address various ways in which nuclear physics and biology were used - and abused - at the Hanford Site to combine the needs of politics with the needs of a healthy society. This paper further investigates the moral responsibility of science to society and the way in which biological research informed nuclear physics about the deleterious consequences of radiation on environment and on the human body.

Treatment plan ranking using physical and biological indices

International Nuclear Information System (INIS)

Ebert, M. A.; University of Western Asutralia, WA

2001-01-01

Full text: The ranking of dose distributions is of importance in several areas such as i) comparing rival treatment plans, ii) comparing iterations in an optimisation routine, and iii) dose-assessment of clinical trial data. This study aimed to investigate the influence of choice of objective function in ranking tumour dose distributions. A series of physical (mean, maximum, minimum, standard deviation of dose) dose-volume histogram (DVH) reduction indices and biologically-based (tumour-control probability - TCP; equivalent uniform dose -EUD) indices were used to rank a series of hypothetical DVHs, as well as DVHs obtained from a series of 18 prostate patients. The distribution in ranking and change in distribution with change in indice parameters were investigated. It is found that not only is the ranking of DVHs dependent on the actual model used to perform the DVH reduction, it is also found to depend on the inherent characteristics of each model (i.e., selected parameters). The adjacent figure shows an example where the 18 prostate patients are ranked (grey-scale from black to white) by EUD when an α value of 0.8 Gy -1 is used in the model. The change of ranking as α varies is evident. Conclusion: This study has shown that the characteristics of the model selected in plan optimisation or DVH ranking will have an impact on the ranking obtained. Copyright (2001) Australasian College of Physical Scientists and Engineers in Medicine

Nuclear physics and biology

International Nuclear Information System (INIS)

Valentin, L.

1994-01-01

This paper is about nuclear instrumentation and biological concepts, based on images from appropriate Β detectors. First, three detectors are described: the SOFI detector, for gene mapping, the SOFAS detector, for DNA sequencing and the RIHR detector, for in situ hybridization. Then, the paper presents quantitative imaging in molecular genetic and functional imaging. (TEC)

Tritium in the Physical and Biological Sciences. V. 1. Proceedings of a Symposium

Energy Technology Data Exchange (ETDEWEB)

NONE

1962-01-15

The use of tritium for research in physics, chemistry, biology and hydrology has in recent years become increasingly important. It was for this reason that the first international conference to discuss the progress of new developments was organized by the IAEA in conjunction with the Joint Commission on Applied Radioactivity and held from 3-10 May 1961, in Vienna. The first five sessions of the Symposium were devoted to the use of tritium in hydrology, physics and chemistry. Special emphasis was laid on the role of tritium as a tracer in hydrology, especially in the study of water movement. The establishment and improvement of counting and detection techniques to facilitate the application of tritium as a tracer was another aspect discussed in this part of the proceedings. Papers were read on the preparation of tritiated compounds and it was generally agreed that further clarification of the mechanism of various techniques, and of the Wilzbach gas exposure technique in particular, would lead to further developments in the synthesis of a number of tritium compounds important in biology. Other papers were concerned with tritium applications to studies of the mechanism of some chemical reactions together with the effects of tritium isotopes. During the second part of the Symposium the biological applications of tritium and tritiated compounds were discussed. These included general problems connected with the biological uses of tritium and the radiation effects of tritium on living organisms such as viruses, bacteria and cancer cells. The value of tritium in biological studies became apparent because of the ease with which a large number of metabolically active compounds such as hormones, vitamins and other important constituents in the body can be labelled with tritium. Tritium is also a weak beta-emitter and autoradiographie s of tissues and single cells containing tritium-labelled compounds allow an excellent localization of the tracer. The Symposium was attended by

IBPRO - A Novel Short-Duration Teaching Course in Advanced Physics and Biology Underlying Cancer Radiotherapy.

Science.gov (United States)

Joiner, Michael C; Tracey, Monica W; Kacin, Sara E; Burmeister, Jay W

2017-06-01

This article provides a summary and status report of the ongoing advanced education program IBPRO - Integrated course in Biology and Physics of Radiation Oncology. IBPRO is a five-year program funded by NCI. It addresses the recognized deficiency in the number of mentors available who have the required knowledge and skill to provide the teaching and training that is required for future radiation oncologists and researchers in radiation sciences. Each year, IBPRO brings together 50 attendees typically at assistant professor level and upwards, who are already qualified/certified radiation oncologists, medical physicists or biologists. These attendees receive keynote lectures and activities based on active learning strategies, merging together the clinical, biological and physics underpinnings of radiation oncology, at the forefront of the field. This experience is aimed at increasing collaborations, raising the level and amount of basic and applied research undertaken in radiation oncology, and enabling attendees to confidently become involved in the future teaching and training of researchers and radiation oncologists.

The effects of urbanization on the biological, physical, and chemical characteristics of coastal New England streams

Science.gov (United States)

Coles, James F.; Cuffney, Thomas F.; McMahon, Gerard; Beaulieu, Karen M.

2004-01-01

During August 2000, responses of biological communities (invertebrates, fish, and algae), physical habitat, and water chemistry to urban intensity were compared among 30 streams within 80 miles of Boston, Massachusetts. Sites chosen for sampling represented a gradient of the intensity of urban development (urban intensity) among drainage basins that had minimal natural variability. In this study, spatial differences were used as surrogates for temporal changes to represent the effects of urbanization over time. The degree of urban intensity for each drainage basin was characterized with a standardized urban index (0-100, lowest to highest) derived from land cover, infrastructure, and socioeconomic variables. Multivariate and multimetric analyses were used to compare urban index values with biological, physical, and chemical data to determine how the data indicated responses to urbanization. Multivariate ordinations were derived for the invertebrate-, fish-, and algae-community data by use of correspondence analysis, and ordinations were derived for the chemical and physical data by use of principal-component analysis. Site scores from each of the ordinations were plotted in relation to the urban index to test for a response. In all cases, the primary axis scores showed the strongest response to the urban index, indicating that urbanization was a primary factor affecting the data ordination. For the multimetric analyses, each of the biological data sets was used to calculate a series of community metrics. For the sets of chemical and physical data, the individual variables and various combinations of individual variables were used as measured and derived metrics, respectively. Metrics that were generally most responsive to the urban index for each data set included: EPT (Ephemeroptera, Plecoptera, Trichoptera) taxa for invertebrates; cyprinid taxa for fish; diatom taxa for algae; bicarbonate, conductivity, and nitrogen for chemistry; and water depth and temperature

Nonequilibrium thermodynamics transport and rate processes in physical, chemical and biological systems

CERN Document Server

Demirel, Yasar

2014-01-01

Natural phenomena consist of simultaneously occurring transport processes and chemical reactions. These processes may interact with each other and may lead to self-organized structures, fluctuations, instabilities, and evolutionary systems. Nonequilibrium Thermodynamics, 3rd edition emphasizes the unifying role of thermodynamics in analyzing the natural phenomena. This third edition updates and expands on the first and second editions by focusing on the general balance equations for coupled processes of physical, chemical, and biological systems. The new edition contains a new chapte

Physical and biological pretreatment quality assurance of the head and neck cancer plan with the volumetric modulated arc therapy

Science.gov (United States)

Park, So-Hyun; Lee, Dong-Soo; Lee, Yun-Hee; Lee, Seu-Ran; Kim, Min-Ju; Suh, Tae-Suk

2015-09-01

The aim of this work is to demonstrate both the physical and the biological quality assurance (QA) aspects as pretreatment QA of the head and neck (H&N) cancer plan for the volumetric modulated arc therapy (VMAT). Ten H&N plans were studied. The COMPASS® dosimetry analysis system and the tumor control probability (TCP) and the normal tissue complication probability (NTCP) calculation free program were used as the respective measurement and calculation tools. The reliability of these tools was verified by a benchmark study in accordance with the TG-166 report. For the physical component of QA, the gamma passing rates and the false negative cases between the calculated and the measured data were evaluated. The biological component of QA was performed based on the equivalent uniform dose (EUD), TCP and NTCP values. The evaluation was performed for the planning target volumes (PTVs) and the organs at risks (OARs), including the eyes, the lens, the parotid glands, the esophagus, the spinal cord, and the brainstem. All cases had gamma passing rates above 95% at an acceptance tolerance level with the 3%/3 mm criteria. In addition, the false negative instances were presented for the PTVs and OARs. The gamma passing rates exhibited a weak correlation with false negative cases. For the biological QA, the physical dose errors affect the EUD and the TCP for the PTVs, but no linear correlation existed between them. The EUD and NTCP for the OARs were shown the random differences that could not be attributed to the dose errors from the physical QA. The differences in the EUD and NTCP between the calculated and the measured results were mainly demonstrated for the parotid glands. This study describes the importance and the necessity of improved QA to accompany both the physical and the biological aspects for accurate radiation treatment.

Predicting Salmonella Populations from Biological, Chemical, and Physical Indicators in Florida Surface Waters

OpenAIRE

McEgan, Rachel; Mootian, Gabriel; Goodridge, Lawrence D.; Schaffner, Donald W.; Danyluk, Michelle D.

2013-01-01

Coliforms, Escherichia coli, and various physicochemical water characteristics have been suggested as indicators of microbial water quality or index organisms for pathogen populations. The relationship between the presence and/or concentration of Salmonella and biological, physical, or chemical indicators in Central Florida surface water samples over 12 consecutive months was explored. Samples were taken monthly for 12 months from 18 locations throughout Central Florida (n = 202). Air and wat...

Graduate student training and creating new physics labs for biology students, killing two birds with one stone.

Science.gov (United States)

Jones, Barbara

2001-03-01

At UCSD biology majors are required to take 3 quarters of a calculus based physics course. This is taught in a standard format large lecture class partly by faculty and partly by freeway flyers. We are working with physics graduate students who are also participating in our PFPF (Preparing Future Physics Faculty) program to write, review, and teach new weekly labs for these biology students. This provides an experience for the grad student that is both rewarding to them and useful to the department. The grad students participate in curriculum development, they observe the students behaviour in the labs, and assess the effectiveness of different lab formats. The labs are intended to provide an interactive, hands on experience with a wide variety of equipment which is mostly both simple and inexpensive. Both students and grads find the labs to be engaging and fun. Based on group discussions the labs are modified to try to try to create the best teaching environment. The biology students benefit from the improvements both in the quality of the labs they do, and from the enthusiasm of the TAs who take an active interest in their learning. The ability to make significant changes to the material taught maintains the interest of the grad students and helps to make the labs a stable and robust environment.

Oceanography of Glacier Bay, Alaska: Implications for biological patterns in a glacial fjord estuary

Science.gov (United States)

Etherington, L.L.; Hooge, P.N.; Hooge, Elizabeth Ross; Hill, D.F.

2007-01-01

Alaska, U.S.A, is one of the few remaining locations in the world that has fjords that contain temperate idewater glaciers. Studying such estuarine systems provides vital information on how deglaciation affects oceanographic onditions of fjords and surrounding coastal waters. The oceanographic system of Glacier Bay, Alaska, is of particular interest ue to the rapid deglaciation of the Bay and the resulting changes in the estuarine environment, the relatively high oncentrations of marine mammals, seabirds, fishes, and invertebrates, and the Bay’s status as a national park, where ommercial fisheries are being phased out. We describe the first comprehensive broad-scale analysis of physical and iological oceanographic conditions within Glacier Bay based on CTD measurements at 24 stations from 1993 to 2002. easonal patterns of near-surface salinity, temperature, stratification, turbidity, and euphotic depth suggest that freshwater nput was highest in summer, emphasizing the critical role of glacier and snowmelt to this system. Strong and persistent tratification of surface waters driven by freshwater input occurred from spring through fall. After accounting for seasonal nd spatial variation, several of the external physical factors (i.e., air temperature, precipitation, day length) explained a large mount of variation in the physical properties of the surface waters. Spatial patterns of phytoplankton biomass varied hroughout the year and were related to stratification levels, euphotic depth, and day length. We observed hydrographic atterns indicative of strong competing forces influencing water column stability within Glacier Bay: high levels of freshwater ischarge promoted stratification in the upper fjord, while strong tidal currents over the Bay’s shallow entrance sill enhanced ertical mixing. Where these two processes met in the central deep basins there were optimal conditions of intermediate tratification, higher light levels, and potential nutrient renewal

Teaching Introductory Oceanography through Case Studies: Project based approach for general education students

Science.gov (United States)

Farnsworth, K. L.; House, M.; Hovan, S. A.

2013-12-01

A recent workshop sponsored by SERC-On the Cutting Edge brought together science educators from a range of schools across the country to discuss new approaches in teaching oceanography. In discussing student interest in our classes, we were struck by the fact that students are drawn to emotional or controversial topics such as whale hunting and tsunami hazard and that these kinds of topics are a great vehicle for introducing more complex concepts such as wave propagation, ocean upwelling and marine chemistry. Thus, we have developed an approach to introductory oceanography that presents students with real-world issues in the ocean sciences and requires them to explore the science behind them in order to improve overall ocean science literacy among non-majors and majors at 2 and 4 year colleges. We have designed a project-based curriculum built around topics that include, but are not limited to: tsunami hazard, whale migration, ocean fertilization, ocean territorial claims, rapid climate change, the pacific trash patch, overfishing, and ocean acidification. Each case study or project consists of three weeks of class time and is structured around three elements: 1) a media analysis; 2) the role of ocean science in addressing the issue; 3) human impact/response. Content resources range from textbook readings, popular or current print news, documentary film and television, and data available on the world wide web from a range of sources. We employ a variety of formative assessments for each case study in order to monitor student access and understanding of content and include a significant component of in-class student discussion and brainstorming guided by faculty input to develop the case study. Each study culminates in summative assessments ranging from exams to student posters to presentations, depending on the class size and environment. We envision this approach for a range of classroom environments including large group face-to-face instruction as well as hybrid

Interest in STEM is contagious for students in biology, chemistry, and physics classes.

Science.gov (United States)

Hazari, Zahra; Potvin, Geoff; Cribbs, Jennifer D; Godwin, Allison; Scott, Tyler D; Klotz, Leidy

2017-08-01

We report on a study of the effect of peers' interest in high school biology, chemistry, and physics classes on students' STEM (science, technology, engineering, and mathematics)-related career intentions and course achievement. We define an interest quorum as a science class where students perceive a high level of interest for the subject matter from their classmates. We hypothesized that students who experience such an interest quorum are more likely to choose STEM careers. Using data from a national survey study of students' experiences in high school science, we compared the effect of five levels of peer interest reported in biology, chemistry, and physics courses on students' STEM career intentions. The results support our hypothesis, showing a strong, positive effect of an interest quorum even after controlling for differences between students that pose competing hypotheses such as previous STEM career interest, academic achievement, family support for mathematics and science, and gender. Smaller positive effects of interest quorums were observed for course performance in some cases, with no detrimental effects observed across the study. Last, significant effects persisted even after controlling for differences in teaching quality. This work emphasizes the likely importance of interest quorums for creating classroom environments that increase students' intentions toward STEM careers while enhancing or maintaining course performance.

Interest in STEM is contagious for students in biology, chemistry, and physics classes

Science.gov (United States)

Hazari, Zahra; Potvin, Geoff; Cribbs, Jennifer D.; Godwin, Allison; Scott, Tyler D.; Klotz, Leidy

2017-01-01

We report on a study of the effect of peers’ interest in high school biology, chemistry, and physics classes on students’ STEM (science, technology, engineering, and mathematics)–related career intentions and course achievement. We define an interest quorum as a science class where students perceive a high level of interest for the subject matter from their classmates. We hypothesized that students who experience such an interest quorum are more likely to choose STEM careers. Using data from a national survey study of students‘ experiences in high school science, we compared the effect of five levels of peer interest reported in biology, chemistry, and physics courses on students‘ STEM career intentions. The results support our hypothesis, showing a strong, positive effect of an interest quorum even after controlling for differences between students that pose competing hypotheses such as previous STEM career interest, academic achievement, family support for mathematics and science, and gender. Smaller positive effects of interest quorums were observed for course performance in some cases, with no detrimental effects observed across the study. Last, significant effects persisted even after controlling for differences in teaching quality. This work emphasizes the likely importance of interest quorums for creating classroom environments that increase students’ intentions toward STEM careers while enhancing or maintaining course performance. PMID:28808678

Physical, chemical, and biological data collected in Weeks Bay, Alabama (June 1990 - May 2000) (NODC Accession 0116469)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Abstract: This dataset contains ten years of physical, chemical, and biological data collected during shipboard surveys in Weeks Bay, Alabama, between June 1990 and...

Biological effects and physical safety aspects of NMR imaging and in vivo spectroscopy

Energy Technology Data Exchange (ETDEWEB)

Tenforde, T.S.; Budinger, T.F.

1985-08-01

An assessment is made of the biological effects and physical hazards of static and time-varying fields associated with the NMR devices that are being used for clinical imaging and in vivo spectroscopy. A summary is given of the current state of knowledge concerning the mechanisms of interaction and the bioeffects of these fields. Additional topics that are discussed include: (1) physical effects on pacemakers and metallic implants such as aneurysm clips, (2) human health studies related to the effects of exposure to nonionizing electromagnetic radiation, and (3) extant guidelines for limiting exposure of patients and medical personnel to the fields produced by NMR devices. On the basis of information available at the present time, it is concluded that the fields associated with the current generation of NMR devices do not pose a significant health risk in themselves. However, rigorous guidelines must be followed to avoid the physical interaction of these fields with metallic implants and medical electronic devices. 476 refs., 5 figs., 2 tabs.

Biological effects and physical safety aspects of NMR imaging and in vivo spectroscopy

International Nuclear Information System (INIS)

Tenforde, T.S.; Budinger, T.F.

1985-08-01

An assessment is made of the biological effects and physical hazards of static and time-varying fields associated with the NMR devices that are being used for clinical imaging and in vivo spectroscopy. A summary is given of the current state of knowledge concerning the mechanisms of interaction and the bioeffects of these fields. Additional topics that are discussed include: (1) physical effects on pacemakers and metallic implants such as aneurysm clips, (2) human health studies related to the effects of exposure to nonionizing electromagnetic radiation, and (3) extant guidelines for limiting exposure of patients and medical personnel to the fields produced by NMR devices. On the basis of information available at the present time, it is concluded that the fields associated with the current generation of NMR devices do not pose a significant health risk in themselves. However, rigorous guidelines must be followed to avoid the physical interaction of these fields with metallic implants and medical electronic devices. 476 refs., 5 figs., 2 tabs

Promoting convergence: The integrated graduate program in physical and engineering biology at Yale University, a new model for graduate education.

Science.gov (United States)

Noble, Dorottya B; Mochrie, Simon G J; O'Hern, Corey S; Pollard, Thomas D; Regan, Lynne

2016-11-12

In 2008, we established the Integrated Graduate Program in Physical and Engineering Biology (IGPPEB) at Yale University. Our goal was to create a comprehensive graduate program to train a new generation of scientists who possess a sophisticated understanding of biology and who are capable of applying physical and quantitative methodologies to solve biological problems. Here we describe the framework of the training program, report on its effectiveness, and also share the insights we gained during its development and implementation. The program features co-teaching by faculty with complementary specializations, student peer learning, and novel hands-on courses that facilitate the seamless blending of interdisciplinary research and teaching. It also incorporates enrichment activities to improve communication skills, engage students in science outreach, and foster a cohesive program cohort, all of which promote the development of transferable skills applicable in a variety of careers. The curriculum of the graduate program is integrated with the curricular requirements of several Ph.D.-granting home programs in the physical, engineering, and biological sciences. Moreover, the wide-ranging recruiting activities of the IGPPEB serve to enhance the quality and diversity of students entering graduate school at Yale. We also discuss some of the challenges we encountered in establishing and optimizing the program, and describe the institution-level changes that were catalyzed by the introduction of the new graduate program. The goal of this article is to serve as both an inspiration and as a practical "how to" manual for those who seek to establish similar programs at their own institutions. © 2016 by The International Union of Biochemistry and Molecular Biology, 44(6):537-549, 2016. © 2016 The Authors Biochemistry and Molecular Biology Education published by Wiley Periodicals, Inc. on behalf of International Union of Biochemistry and Molecular Biology.

Correlating Multimodal Physical Sensor Information with Biological Analysis in Ultra Endurance Cycling

Directory of Open Access Journals (Sweden)

Giles D.Warrington

2010-07-01

Full Text Available The sporting domain has traditionally been used as a testing ground for new technologies which subsequently make their way into the public domain. This includes sensors. In this article a range of physical and biological sensors deployed in a 64 hour ultra-endurance non-stop cycling race are described. A novel algorithm to estimate the energy expenditure while cycling and resting during the event are outlined. Initial analysis in this noisy domain of “sensors in the field” are very encouraging and represent a first with respect to cycling.

Population genetic structure of skipjack tuna Katsuwonus pelamis from the Indian coast using sequence analysis of the mitochondrial DNA D-loop region

Digital Repository Service at National Institute of Oceanography (India)

Menezes, M.R.; Kumar, G.; Kunal, S.P.

Biology (2012) 80, 2198–2212 doi:10.1111/j.1095-8649.2012.03270.x, available online at wileyonlinelibrary.com Population genetic structure of skipjack tuna Katsuwonus pelamis from the Indian coast using sequence analysis of the mitochondrial DNA D...-loop region M. R. Menezes*, G. Kumar and S. P. Kunal Biological Oceanography Division, National Institute of Oceanography (CSIR), Dona Paula, Goa 403 004, India (Received 26 May 2011, Accepted 14 February 2012) Genetic structure of skipjack tuna Katsuwonus...

The human heart and the circulatory system as an interesting interdisciplinary topic in lessons of physics and biology

International Nuclear Information System (INIS)

Volná, M; Látal, F; Kubínek, R; Richterek, L

2014-01-01

Many topics which are closely related can be found in the national curriculum of the Czech Republic for physics and biology. One of them is the heart and the circulatory system in the human body. This topic was examined cross curriculum, a teaching module was created and the topic was chosen for our research. The task was to determine if the students of bachelor study are aware of connections between physics and biology within this topic and whether we can help them effectively to describe the corresponding physics phenomena in the human body connected, for example, with a heart attack or with the measurement of blood pressure. In this paper, the heart and the circulatory system are presented as suitable topics for an interdisciplinary teaching module which includes both theoretical and experimental parts. The module was evaluated by a group of first-year undergraduate students of physics at the Faculty of Science, Palacký University. The acquired knowledge was compared with another control group through a test. The highest efficiency of the module was evaluated on the basis of questions that covered the calculation problems. (paper)

Progress report, Biology and Health Physics Division, January 1 to March 31, 1978

International Nuclear Information System (INIS)

Progress of work in Biology and Health Physics Division is reported for first quarter 1978. Measurements of liquid and plastic scintillator responses over a wide range of gamma-ray energies and calculations of the shape of the Compton electron distribution have been made for different scintillator sizes. Other work performed in health physics included determination of errors involved in accurate determination of dose-equivalents resulting from tritium ingestion, and development of radiation monitors and techniques for using them to best advantage. A wide range of environmental studies were underway during the quarter, notably 14 C/ 12 C ratio measurement using an accelerator-spectrometer and contiuing studies of the beneficial uses of thermal effluents. Development of computer linkage techniques for medical records continued. Practical applications of the approach include linkage of personal exposure histories with death records pertaining to the exposed individuals. Work in the Biology Branch has continued to focus upon the effects of radiation on a variety of living organisms, ranging from bacterial viruses to humans. The principal sensitive target for long-term biological effects of radiation on all living organisms is DNA. The chemical nature of the damage caused in DNA by radiation and the response of cells to this damage is being studied by a variety of biochemical and genetic techniques. A review of literature on the causes of cancer in humans has continued. If effects are linearly related to total dose, as is normally assumed for purposes of radiation protection, then the total number of fatal cancers predicted to arise from the use of nuclear power in the future should be about 100 times less than the number induced by urban air pollution resulting from the combustion of coal and oil to produce the same amount of electricity. (OST)

Comparison of Technology Use between Biology and Physics Teachers in a 1:1 Laptop Environment

Science.gov (United States)

Crook, Simon J.; Sharma, Manjula D.; Wilson, Rachel

2015-01-01

Using a mixed-methods approach the authors compared the associated practices of senior physics teachers (n = 7) and students (n = 53) in a 1:1 laptop environment with those of senior biology teachers (n = 10) and students (n = 125) also in a 1:1 laptop environment, in seven high schools in Sydney, NSW, Australia. They found that the physics…

Structures linking physical and biological processes in headwater streams of the Maybeso watershed, Southeast Alaska

Science.gov (United States)

Mason D. Bryant; Takashi Gomi; Jack J. Piccolo

2007-01-01

We focus on headwater streams originating in the mountainous terrain of northern temperate rain forests. These streams rapidly descend from gradients greater than 20% to less than 5% in U-shaped glacial valleys. We use a set of studies on headwater streams in southeast Alaska to define headwater stream catchments, link physical and biological processes, and describe...

From the Physical World to the Biological Universe: Historical Developments Underlying SETI

Science.gov (United States)

Dick, Steven J.

More than thirty years ago the French historian of science Alexandre Koyré (1957) wrote his classic volume, From the Closed World to the Infinite Universe, in which he argued that a fundamental shift in world view had taken place in 17th century cosmology. Between Nicholas of Cusa in the fifteenth century and Newton and Leibniz in the seventeenth, he found that the very terms in which humans thought about their universe had changed. These changes he characterized broadly as the destruction of the closed finite cosmos and the geometrization of space. The occasion of the Third International Bioastronomy Symposium in France is an especially appropriate time to argue that the SETI endeavor represents a test for a similar fundamental shift in cosmological world view, from the physical world to the biological universe. I define the biological universe, equivalent to what I have called before the biophysical cosmology (Dick, 1989), as the scientific world view which holds that life is widespread throughout the universe. In this case the biological universe does not necessarily supersede the physical universe, but a universe filled with life would certainly fundamentally alter our attitude toward the universe, and our place in it. Although Koyré mentioned life beyond the Earth as an adjunct to the revolution from the closed world to the infinite universe, only in the 1980s has the history of science begun to give full treatment to the subject. What follows is meant to be a contribution to that ongoing endeavor to understand where the extraterrestrial life debate fits in the history of science. The modern era in the extraterrestrial life debate is normally dated from Cocconi and Morrison's paper in 1959, and though one can always find precursors, this in my view is a valid perception. Cocconi and Morrison gave definite form to SETI, Frank Drake independently first carried out the experiment, a network of interested scientists began to form and met in Green Bank in

Physics must join with biology in better assessing risk from low-dose irradiation

International Nuclear Information System (INIS)

Feinendegen, L. E.; Neumann, R. D.

2005-01-01

This review summarises the complex response of mammalian cells and tissues to low doses of ionising radiation. This thesis encompasses induction of DNA damage, and adaptive protection against both renewed damage and against propagation of damage from the basic level of biological organisation to the clinical expression of detriment. The induction of DNA damage at low radiation doses apparently is proportional to absorbed dose at the physical/chemical level. However, any propagation of such damage to higher levels of biological organisation inherently follows a sigmoid function. Moreover, low-dose-induced inhibition of damage propagation is not linear, but instead follows a dose-effect function typical for adaptive protection, after an initial rapid rise it disappears at doses higher than ∼0.1-0.2 Gy to cells. The particular biological response duality at low radiation doses precludes the validity of the linear-no-threshold hypothesis in the attempt to relate absorbed dose to cancer. In fact, theory and observation support not only a lower cancer incidence than expected from the linear-no-threshold hypothesis, but also a reduction of spontaneously occurring cancer, a hormetic response, in the healthy individual. (authors)

Analysis of MIR-18 results for physical and biological dosimetry: radiation shielding effectiveness in LEO

International Nuclear Information System (INIS)

Cucinotta, F.A.; Wilson, J.W.; Williams, J.R.; Dicello, J.F.

2000-01-01

We compare models of radiation transport and biological response to physical and biological dosimetry results from astronauts on the Mir space station. Transport models are shown to be in good agreement with physical measurements and indicate that the ratio of equivalent dose from the Galactic Cosmic Rays (GCR) to protons is about 3/2:1 and that this ratio will increase for exposures to internal organs. Two biological response models are used to compare to the Mir biodosimetry for chromosome aberration in lymphocyte cells; a track-structure model and the linear-quadratic model with linear energy transfer (LET) dependent weighting coefficients. These models are fit to in vitro data for aberration formation in human lymphocytes by photons and charged particles. Both models are found to be in reasonable agreement with data for aberrations in lymphocytes of Mir crew members: however there are differences between the use of LET dependent weighting factors and track structure models for assigning radiation quality factors. The major difference in the models is the increased effectiveness predicted by the track model for low charge and energy ions with LET near 10 keV/μm. The results of our calculations indicate that aluminum shielding, although providing important mitigation of the effects of trapped radiation, provides no protective effect from the galactic cosmic rays (GCR) in low-earth orbit (LEO) using either equivalent dose or the number of chromosome aberrations as a measure until about 100 g/cm 2 of material is used

Physical, chemical, and biological data collected in Mobile Bay, Alabama in May 1989-December 1999 (NODC Accession 0116496)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This dataset contains physical, chemical, and biological data collected during ten years of near-monthly shipboard surveys carried out in Mobile Bay between May 1989...

The effect of shape on drag: a physics exercise inspired by biology

Science.gov (United States)

Fingerut, Jonathan; Johnson, Nicholas; Mongeau, Eric; Habdas, Piotr

2017-07-01

As part of a biomechanics course aimed at upper-division biology and physics majors, but applicable to a range of student learning levels, this laboratory exercise provides an insight into the effect of shape on hydrodynamic performance, as well an introduction to computer aided design (CAD) and 3D printing. Students use hydrodynamic modeling software and simple CAD programs to design a shape with the least amount of drag based on strategies gleaned from the study of natural forms. Students then print the shapes using a 3D printer and test their shapes against their classmates in a friendly competition. From this exercise, students gain a more intuitive sense of the challenges that organisms face when moving through fluid environments, the physical phenomena involved in moving through fluids at high Reynolds numbers and observe how and why certain morphologies, such as streamlining, are common answers to the challenge of swimming at high speeds.

The Photo-Physics of Polythiophene Nanoparticles for Biological Applications.

Science.gov (United States)

Bargigia, Ilaria; Zucchetti, Elena; Srimath Kandada, Ajay Ram; Moreira, Miguel; Bossio, Caterina; Wong, Walter; Miranda, Paulo; Decuzzi, Paolo; Soci, Cesare; D'Andrea, Cosimo; Lanzani, Guglielmo

2018-05-01

In this work the photo-physics of poly(3-hexyltiophene) nanoparticles (NPs) is investigated in the context of their biological applications. The NPs made as colloidal suspensions in aqueous buffers present a distinct absorption band in the low energy region. Based on systematic analysis of absorption and transient absorption spectra taken under different pH conditions, this band is associated to charge transfer states generated by the polarization of loosely bound polymer chains and originated from complexes formed with electron withdrawing species. Importantly, the ground state depletion of these states upon photo-excitation is active even in the microsecond timescales, suggesting that they act as precursor states for long-living polarons which could be beneficial for cellular stimulation. Preliminary results of transient absorption microscopy of NPs internalized within the cells reveal the presence of long-living species, further substantiating their relevance in bio-interfaces. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

A novel biological 'twin-father' temporal paradox of General Relativity in a Gödel universe - Where reproductive biology meets theoretical physics.

Science.gov (United States)

Ashrafian, Hutan

2018-03-01

Several temporal paradoxes exist in physics. These include General Relativity's grandfather and ontological paradoxes and Special Relativity's Langevin-Einstein twin-paradox. General relativity paradoxes can exist due to a Gödel universe that follows Gödel's closed timelike curves solution to Einstein's field equations. A novel biological temporal paradox of General Relativity is proposed based on reproductive biology's phenomenon of heteropaternal fecundation. Herein, dizygotic twins from two different fathers are the result of concomitant fertilization during one menstrual cycle. In this case an Oedipus-like individual exposed to a Gödel closed timelike curve would sire a child during his maternal fertilization cycle. As a consequence of heteropaternal superfecundation, he would father his own dizygotic twin and would therefore generate a new class of autofraternal superfecundation, and by doing so creating a 'twin-father' temporal paradox. Copyright © 2017 Elsevier Ltd. All rights reserved.

Oceanography of marginal seas

Digital Repository Service at National Institute of Oceanography (India)

DileepKumar, M.

in the first two shallow seas are driven by surface densification following evaporation that in the latter is largely influenced by freshwater discharge from Irrawaddy and inflows across the Andaman Ridge from east Bay of Bengal. Biological productivity...

Radioactive discharges from Sellafield (UK)

International Nuclear Information System (INIS)

Pentreath, R.J.

1985-01-01

This study of low-level liquid radioactive discharges from the British Nuclear Fuels Ltd Sellafield site into the eastern basin of the Irish Sea, prepared on the basis of existing publications and documents, reviews chemical forms and rate of discharges, physical oceanography, sediment distribution and fisheries of the Irish Sea, behaviour of radionuclides in seawater, association with sedimentary materials, accumulation of radionuclides by biological materials, environmental monitoring, surveillance and assessment of radiation exposure of the public and impact on the environment

Biological-Physical Coupling in the Gulf of Maine: Satellite and Model Studies of Phytoplankton Variability

Science.gov (United States)

Thomas, Andrew C.; Chai, F.; Townsend, D. W.; Xue, H.

2002-01-01

The goals of this project were to acquire, process, QC, archive and analyze SeaWiFS chlorophyll fields over the Gulf of Maine and Scotia Shelf region. The focus of the analysis effort was to calculate and quantify seasonality and interannual. variability of SeaWiFS-measured phytoplankton biomass in the study area and compare these to physical forcing and hydrography. An additional focus within this effort was on regional differences within the heterogeneous biophysical regions of the Gulf of Maine / Scotia Shelf. Overall goals were approached through the combined use of SeaWiFS and AVHRR data and the development of a coupled biology-physical numerical model.

Emerging concepts for management of river ecosystems and challenges to applied integration of physical and biological sciences in the Pacific Northwest, USA

Science.gov (United States)

Rieman, Bruce; Dunham, Jason B.; Clayton, James

2006-01-01

Integration of biological and physical concepts is necessary to understand and conserve the ecological integrity of river systems. Past attempts at integration have often focused at relatively small scales and on mechanistic models that may not capture the complexity of natural systems leaving substantial uncertainty about ecological responses to management actions. Two solutions have been proposed to guide management in the face of that uncertainty: the use of “natural variability” in key environmental patterns, processes, or disturbance as a reference; and the retention of some areas as essentially unmanaged reserves to conserve and represent as much biological diversity as possible. Both concepts are scale dependent because dominant processes or patterns that might be referenced will change with scale. Context and linkages across scales may be as important in structuring biological systems as conditions within habitats used by individual organisms. Both ideas view the physical environment as a template for expression, maintenance, and evolution of ecological diversity. To conserve or restore a diverse physical template it will be important to recognize the ecologically important differences in physical characteristics and processes among streams or watersheds that we might attempt to mimic in management or represent in conservation or restoration reserves.

Radiation physics, biophysics, and radiation biology. Progress report, December 1, 1985-November 30, 1986

International Nuclear Information System (INIS)

Hall, E.J.

1986-07-01

This is the annual report of the Radiological Research Laboratory of the Department of Radiation Oncology, Columbia University. The bulk of the research of the Laboratory involves basic and fundamental aims, not confined to radiotherapy. Research carried out in the Laboratory covers the determination of microdosimetry quantities, computer simulation of particle tracks, determination of oncogenic transformation, and the transfection of DNA into cells. The Hallmark of the Laboratory is the interaction between physics and biology

The biological and physical role of mulch in the rehabilitation of custed soil in the Sahel

NARCIS (Netherlands)

Mando, A.; Stroosnijder, L.

1999-01-01

During three consecutive years (1993–1995) a split-plot design with three replications was used to study the biological and physical role of mulch in the improvement of crusted soil water balance and its productivity in the north of Burkina Faso. The main treatment was the use of an insecticide, to

Radiation physics, biophysics, and radiation biology. Final report, October 1, 1971--September 30, 1977

International Nuclear Information System (INIS)

Rossi, H.H.; Hall, E.J.

1978-02-01

Research under Contract EY-76-C-02-3243 has been carried out in the area of Radiation Physics, Biophysics and Radiation Biology. During the period of this contract the major accomplishments include, in Physics, the refinement of tissue equivalent dosimetry, the formulation of the concepts of microdosimetry, the development of apparatus used in microdosimetry, and the development of ionization chambers with internal gas multiplication. Principal contributions in Radiobiology have included the determination of RBE and OER as a function of neutron energy, the study of combined effects of radiation and a variety of other agents, and the investigation of the transformation of cells in tissue culture. Theoretical research centered around the development of the theoretical framework of microdosimetry and the establishment of the Theory of Dual Radiation Action. In a cooperative effort with Brookhaven National Laboratory, a major accelerator facility dedicated exclusively to Radiobiology and Radiation Physics, has been developed. Members of the laboratory have performed extensive service to national and international organizations

Biological physics and synchrotron radiation

International Nuclear Information System (INIS)

Filhol, J.M.; Chavanne, J.; Weckert, E.

2001-01-01

This conference deals with the applications of synchrotron radiation to current problems in biology and medicine. Seven sessions take stock on the subject: sources and detectors; inelastic scattering and dynamics; muscle diffraction; reaction mechanisms; macromolecular assemblies; medical applications; imaging and spectroscopy. The document presents the papers abstracts. (A.L.B.)

Biological physics and synchrotron radiation

Energy Technology Data Exchange (ETDEWEB)

Filhol, J M; Chavanne, J [European Synchrotron Radiation Facility, 38 - Grenoble (France); Weckert, E [Hasylab at Desy, Hamburg (Germany); and others

2001-07-01

This conference deals with the applications of synchrotron radiation to current problems in biology and medicine. Seven sessions take stock on the subject: sources and detectors; inelastic scattering and dynamics; muscle diffraction; reaction mechanisms; macromolecular assemblies; medical applications; imaging and spectroscopy. The document presents the papers abstracts. (A.L.B.)

Essential Concepts and Underlying Theories from Physics, Chemistry, and Mathematics for "Biochemistry and Molecular Biology" Majors

Science.gov (United States)

Wright, Ann; Provost, Joseph; Roecklein-Canfield, Jennifer A.; Bell, Ellis

2013-01-01

Over the past two years, through an NSF RCN UBE grant, the ASBMB has held regional workshops for faculty members from around the country. The workshops have focused on developing lists of Core Principles or Foundational Concepts in Biochemistry and Molecular Biology, a list of foundational skills, and foundational concepts from Physics, Chemistry,…

Annual mean statistics of the surface fluxes of the tropical Indian Ocean

Digital Repository Service at National Institute of Oceanography (India)

RameshKumar, M.R.; Rao, L.V.G.

MEAN STATISTICS OF THE SURFACE FLUXES OF THE TROPICAL INDIAN OCEAN (Research Note) M. R. RAMESH KUMAR and L. V. GANGADHARA RAO Physical Oceanography Division, National Institute of Oceanography, Dona Paula, 403004, Goa, India (Received in final...

Chemistry and Biology

Science.gov (United States)

Wigston, David L.

1970-01-01

Discusses the relationship between chemisty and biology in the science curriculum. Points out the differences in perception of the disciplines, which the physical scientists favoring reductionism. Suggests that biology departments offer a special course for chemistry students, just as the chemistry departments have done for biology students.…

Climate change and physical disturbance cause similar community shifts in biological soil crusts

Science.gov (United States)

Ferrenberg, Scott; Reed, Sasha C.; Belnap, Jayne

2015-01-01

Biological soil crusts (biocrusts)—communities of mosses, lichens, cyanobacteria, and heterotrophs living at the soil surface—are fundamental components of drylands worldwide, and destruction of biocrusts dramatically alters biogeochemical processes, hydrology, surface energy balance, and vegetation cover. While there has been long-standing concern over impacts of 5 physical disturbances on biocrusts (e.g., trampling by livestock, damage from vehicles), there is also increasing concern over the potential for climate change to alter biocrust community structure. Using long-term data from the Colorado Plateau, USA, we examined the effects of 10 years of experimental warming and altered precipitation (in full-factorial design) on biocrust communities, and compared the effects of altered climate with those of long-term physical 10 disturbance (>10 years of replicated human trampling). Surprisingly, altered climate and physical disturbance treatments had similar effects on biocrust community structure. Warming, altered precipitation frequency [an increase of small (1.2 mm) summer rainfall events], and physical disturbance from trampling all promoted early successional community states marked by dramatic declines in moss cover and increased cyanobacteria cover, with more variable effects 15 on lichens. While the pace of community change varied significantly among treatments, our results suggest that multiple aspects of climate change will affect biocrusts to the same degree as physical disturbance. This is particularly disconcerting in the context of warming, as temperatures for drylands are projected to increase beyond those imposed by the climate treatments used in our study.

A timeless biology.

Science.gov (United States)

Tozzi, Arturo; Peters, James F; Chafin, Clifford; De Falco, Domenico; Torday, John S

2018-05-01

Contrary to claims that physics is timeless while biology is time-dependent, we take the opposite standpoint: physical systems' dynamics are constrained by the arrow of time, while living assemblies are time-independent. Indeed, the concepts of "constraints" and "displacements" shed new light on the role of continuous time flow in life evolution, allowing us to sketch a physical gauge theory for biological systems in long timescales. In the very short timescales of biological systems' individual lives, time looks like "frozen" and "fixed", so that the second law of thermodynamics is momentarily wrecked. The global symmetries (standing for biological constrained trajectories, i.e. the energetic gradient flows dictated by the second law of thermodynamics in long timescales) are broken by local "displacements" where time is held constant, i.e., modifications occurring in living systems. Such displacements stand for brief local forces, able to temporarily "break" the cosmic increase in entropy. The force able to restore the symmetries (called "gauge field") stands for the very long timescales of biological evolution. Therefore, at the very low speeds of life evolution, time is no longer one of the four phase space coordinates of a spacetime Universe: it becomes just a gauge field superimposed to three-dimensional biological systems. We discuss the implications in biology: when assessing living beings, the underrated role of isolated "spatial" modifications needs to be emphasized, living apart the evolutionary role of time. Copyright © 2017 Elsevier Ltd. All rights reserved.

Dynamics and thermodynamics in hierarchically organized systems applications in physics, biology and economics

CERN Document Server

Auger, P

2013-01-01

One of the most fundamental and efficient ways of conceptualizing complex systems is to organize them hierarchically. A hierarchically organized system is represented by a network of interconnected subsystems, each of which has its own network of subsystems, and so on, until some elementary subsystems are reached that are not further decomposed. This original and important book proposes a general mathematical theory of a hierarchical system and shows how it can be applied to very different topics such as physics (Hamiltonian systems), biology (coupling the molecular and the cellular levels), e

WE-E-17A-07: Patient-Specific Mathematical Neuro-Oncology: Biologically-Informed Radiation Therapy and Imaging Physics

Energy Technology Data Exchange (ETDEWEB)

Swanson, K; Corwin, D [Northwestern University, Chicago, IL (United States); Rockne, R

2014-06-15

Purpose: To demonstrate a method of generating patient-specific, biologically-guided radiation therapy (RT) plans and to quantify and predict response to RT in glioblastoma. We investigate the biological correlates and imaging physics driving T2-MRI based response to radiation therapy using an MRI simulator. Methods: We have integrated a patient-specific biomathematical model of glioblastoma proliferation, invasion and radiotherapy with a multiobjective evolutionary algorithm for intensity-modulated RT optimization to construct individualized, biologically-guided plans. Patient-individualized simulations of the standard-of-care and optimized plans are compared in terms of several biological metrics quantified on MRI. An extension of the PI model is used to investigate the role of angiogenesis and its correlates in glioma response to therapy with the Proliferation-Invasion-Hypoxia- Necrosis-Angiogenesis model (PIHNA). The PIHNA model is used with a brain tissue phantom to predict tumor-induced vasogenic edema, tumor and tissue density that is used in a multi-compartmental MRI signal equation for generation of simulated T2- weighted MRIs. Results: Applying a novel metric of treatment response (Days Gained) to the patient-individualized simulation results predicted that the optimized RT plans would have a significant impact on delaying tumor progression, with Days Gained increases from 21% to 105%. For the T2- MRI simulations, initial validation tests compared average simulated T2 values for white matter, tumor, and peripheral edema to values cited in the literature. Simulated results closely match the characteristic T2 value for each tissue. Conclusion: Patient-individualized simulations using the combination of a biomathematical model with an optimization algorithm for RT generated biologically-guided doses that decreased normal tissue dose and increased therapeutic ratio with the potential to improve survival outcomes for treatment of glioblastoma. Simulated T2-MRI

WE-E-17A-07: Patient-Specific Mathematical Neuro-Oncology: Biologically-Informed Radiation Therapy and Imaging Physics

International Nuclear Information System (INIS)

Swanson, K; Corwin, D; Rockne, R

2014-01-01

Purpose: To demonstrate a method of generating patient-specific, biologically-guided radiation therapy (RT) plans and to quantify and predict response to RT in glioblastoma. We investigate the biological correlates and imaging physics driving T2-MRI based response to radiation therapy using an MRI simulator. Methods: We have integrated a patient-specific biomathematical model of glioblastoma proliferation, invasion and radiotherapy with a multiobjective evolutionary algorithm for intensity-modulated RT optimization to construct individualized, biologically-guided plans. Patient-individualized simulations of the standard-of-care and optimized plans are compared in terms of several biological metrics quantified on MRI. An extension of the PI model is used to investigate the role of angiogenesis and its correlates in glioma response to therapy with the Proliferation-Invasion-Hypoxia- Necrosis-Angiogenesis model (PIHNA). The PIHNA model is used with a brain tissue phantom to predict tumor-induced vasogenic edema, tumor and tissue density that is used in a multi-compartmental MRI signal equation for generation of simulated T2- weighted MRIs. Results: Applying a novel metric of treatment response (Days Gained) to the patient-individualized simulation results predicted that the optimized RT plans would have a significant impact on delaying tumor progression, with Days Gained increases from 21% to 105%. For the T2- MRI simulations, initial validation tests compared average simulated T2 values for white matter, tumor, and peripheral edema to values cited in the literature. Simulated results closely match the characteristic T2 value for each tissue. Conclusion: Patient-individualized simulations using the combination of a biomathematical model with an optimization algorithm for RT generated biologically-guided doses that decreased normal tissue dose and increased therapeutic ratio with the potential to improve survival outcomes for treatment of glioblastoma. Simulated T2-MRI

Applications of 14C - AMS on Archaeology, Climate, Environment, Geology, Oceanography and Biology

International Nuclear Information System (INIS)

Gomes, P. R. S.; Macario, K. D.; Anjos, R. M.

2007-01-01

In this contribution we describe several experiments on 14 C-AMS (Accelerator Mass Spectrometry) related to historical, ecological and environmental questions. We discuss the chronology of prehistoric settlements of the central-south Brazilian coast. The unexpected result pulls back by some two thousand years the antiquity consensually accepted for the settlement of that region. We performed an experiment concerning the isotopic signature of the local waters of an important Brazilian coastal upwelling. The results of 14 C-AMS measurements in seaweed tissue show differences in the isotopic signature of the water sources. The present results contribute to opening new perspectives for the use of 14 C as a tracer of the biological production in upwelling areas all over the world. We performed experiments on climate at the Amazon region. At remote lakes of the Amazon region, the Hg accumulation rate archived in sediment cores is a powerful tool for the interpretation of the paleoclimatology and paleoecology of the region. Different sedimentation regimes are observed from ∼41500 yr. BP to the present. The understanding of sea-level fluctuations are fundamental for human occupation of littoral areas and hydrocarbon industry on offshore exploration. We performed radiocarbon dating of foraminifera shell samples, collected in upper slope of Campos Basin, in Southern Brazil. The mean accumulation ratio for the whole column is 6.17 cm/1000 years. Fluctuations in this mean values indicate that the ocean bottom dynamics has some variation during the period. (Author)

Dynamics of the Outer Planets

Science.gov (United States)

1992-01-01

this is at least partly an illusion; it is amusing to speculate than the human tendency to prefer (16,17) over (4) is rooted in our natural tendency...1 0u 2 2(27) Ir 80 2r 90 ’I which, as 0 is a periodic coordinate, integrates to 0. Thus J dO = -2--r = 0. (28)kTO atar I I 235 To obtain an energy...ept. of Oceanography l.a Jolla, CA 92093-0175 College Station, TX 77843 Hancock Library of Biology & Oceanography Fisheries-Oceanography Library Alan

Does adiposity mediate the relationship between physical activity and biological risk factors in youth?

DEFF Research Database (Denmark)

Tarp, J; Bugge, A; Andersen, L B

2018-01-01

BACKGROUND/OBJECTIVES: To model the association between accumulating 60 daily minutes of moderate-to-vigorous physical activity and a composite score of biological risk factors into a direct and an indirect effect, using abdominal obesity as the mediator. SUBJECTS/METHODS: Cross-sectional data from.......11, -0.02) to the indirect effect indicating that 22% of the total effect was mediated by central adiposity. Modelling 30 and 90 min of moderate-to-vigorous physical activity per day resulted in changes in the direct but not the indirect effect. CONCLUSIONS: One hour of daily moderate...... of insulin, glucose, triacylglycerol and inverse HDL-cholesterol. Abdominal obesity was assessed by the waist-circumference:height ratio. Two-stage regression analysis, allowing for exposure-mediator interaction, was used for the effect decomposition. RESULTS: Participants achieving 60 daily minutes...

RV SONNE SO243 Cruise Report / Fahrtbericht Guayaquil, Ecuador: 05. October 2015 Antofagasta, Chile: 22. October 2015 SO243 ASTRA-OMZ: AIR SEA INTERACTION OF TRACE ELEMENTS IN OXYGEN MINIMUM ZONES

OpenAIRE

Marandino, Christa A.

2016-01-01

The ASTRA-OMZ SO243 cruise on board the R/V Sonne took place between the 5th and 22nd October 2015 from Guayaquil, Ecuador to Antofagasta, Chile. Scientists from Germany, the U.S.A, and Norway participated, spanning chemical, biological, and physical oceanography, as well as atmospheric science. The main goal of the cruise was to determine the impact of low oxygen conditions on trace element cycling and distributions, as well as to determine how air-sea exchange of trace elements is influence...

Health-related quality of life of Portuguese children and adolescents according to their biological maturation and volume of physical activity.

Science.gov (United States)

Garcia, Catarina; Teles, Júlia; Barrigas, Carlos; Fragoso, Isabel

2018-06-01

The purpose of this study was to analyze the relationship between biological maturation and health-related quality of life (HRQoL) in Portuguese children and adolescents of both sexes when the effect of chronological age (CA) and volume of physical activity (VPA) were removed. HRQoL, biological maturation, CA, and VPA were assessed in 750 children and adolescents, 11-17 years old, from 3 schools in Lisbon, Portugal. The KIDSCREEN-52 was used to assess HRQoL. Maturity indicator was bone age (BA), using Tanner-Whitehouse III method (TW3). The participants were classified into three different maturity categories: late, on time, and early maturers. VPA was assessed by questionnaire (RAPIL II). An analysis of covariance (ANCOVA), using the CA and the VPA as covariates was completed. The level of significance was set at p ≤ 0.05. Analysis of covariance suggested an influence of biological maturation in physical well-being dimension in both sexes, with early-maturing girls and boys having worst perception. Maturity groups were also influent in moods and emotions for girls. CA seems to be particularly important in self-perception and parent relation and home life for girls and in school environment for boys. Biological maturation and CA have relevant impact on some HRQoL dimensions. These variables, due to their nature and effect should be considered particularly when working with specific domains of HRQoL as physical well-being in both sexes, moods and emotions and self-perception and parent relation and home life for girls and in school environment for boys.

Use of ERTS-1 pictures in coastal oceanography in British Columbia

Science.gov (United States)

Gower, J. F. R.

1973-01-01

The ERTS-1 color composite picture of the Vancouver-Victoria region illustrates the value of ERTS data for coastal oceanography. The water of the Fraser River plume which is so clearly visible in the center of the scene has been of interest to oceanographers on the west coast of Canada for a long time as an easily visible tracer of surface water circulation in the strait of Georgia. Maps of the plume at different states of the tide and with different river flow and weather were compiled from oblique aerial photographs in 1950 and used in the siting of sewage and other outfalls in the Vancouver area. More recently high level aerial photomosaics have been used to map the plume area, but the plume can spread over distances of 30 to 40 miles and many photographs, with the uneven illumination inherent in wide angle coverage, are needed for the mosaic. The ERTS satellite gives the first complete view of the plume area. Electronic enhancement of the images shows that the satellite's narrow angle coverage allows very weak surface turbidity features to be made visible to give information on surface currents over a wide area.

Importancia de la biología molecular para la Fisioterapia moderna Importance of molecular biology for the modern Physical Therapy

Directory of Open Access Journals (Sweden)

Carolina Ramírez Ramírez

2011-12-01

Full Text Available Para que el cuerpo de conocimiento de una profesión crezca y se fortalezca debe estar al día con los avances científicos y tecnológicos que surgen continuamente para incluirlos en el repertorio de recursos que usa para la investigación de problemas específicos de su saber. Recientemente el desciframiento del código genético y la secuenciación del genoma humano creó la base para el surgimiento de metodologías y técnicas en el área de la biología molecular, las cuales permitieron profundizar en el conocimiento de la estructura y función de los tejidos humanos y también mejoraron el entendimiento de los mecanismos por los cuales actúan formas de intervención usadas cotidianamente por profesionales en salud. La Fisioterapia utiliza modalidades físicas que interactúan con los tejidos corporales, por ello la biología molecular permite un mejor entendimiento de los efectos que las dichas modalidades generan en el tejido sobre el cual son aplicadas. Por tanto el objetivo de este artículo es reflexionar sobre la necesidad de que el Fisioterapeuta se apropie del conocimiento en ésta área de las ciencias básicas, usarlo como herramienta para la solución de preguntas relevantes de su quehacer clínico y así contribuir de manera efectiva con la generación de nuevo conocimiento que promueva la práctica basada en la evidencia y fomente el crecimiento de la profesión. Salud UIS 2011; 43 (3: 317-320A profession can be improved through the development and application of scientific and technological advances around the issues relating to their expertise. Recently, the deciphering of the genetic code and human genome sequencing creates the basis for the development of methodologies and techniques of molecular biology. These resources have allowed a deeper understanding of the human tissue structure and function, and intervention mechanisms used by health professionals. Physiotherapy uses physical modalities affecting the tissues of the

Hydrology and Oceanography Analysis Regarding The NPP Site Screening Process at Banten Province

International Nuclear Information System (INIS)

Yarianto-S-Budi-Susilo

2007-01-01

Regarding the NPP development in the future, it is needed to make inventory of potential site in the Java Island as well as in the outside Java Island. The NPP site inventory availability is to answer the energy demand challenge. Site screening process should be performed in accordance with the IAEA safety standard regarding the site selection, investigating several aspects related to the NPP safety (exclusion, safety and suitability factor) in the large area to obtain potential site candidates. For the site survey stage of hydrology and oceanography aspects, the analysis are more focused on the tidal phenomena along the north coastline, bathymetry, water resource, and hydrology system in the Banten Province. The method used are secondary data collection, field confirmation and internet searching. The result of the study showed that Tanjung Pujut and Tanjung Pasir are suitable based on the bathymetry and water intake facility consideration. Meanwhile Tanjung Kait and Tanjung Pasir more suitable considering tsunami aspects that may be generated by Krakatau Volcano. (author)

Methods for the physical characterization and quantification of extracellular vesicles in biological samples.

Science.gov (United States)

Rupert, Déborah L M; Claudio, Virginia; Lässer, Cecilia; Bally, Marta

2017-01-01

Our body fluids contain a multitude of cell-derived vesicles, secreted by most cell types, commonly referred to as extracellular vesicles. They have attracted considerable attention for their function as intercellular communication vehicles in a broad range of physiological processes and pathological conditions. Extracellular vesicles and especially the smallest type, exosomes, have also generated a lot of excitement in view of their potential as disease biomarkers or as carriers for drug delivery. In this context, state-of-the-art techniques capable of comprehensively characterizing vesicles in biological fluids are urgently needed. This review presents the arsenal of techniques available for quantification and characterization of physical properties of extracellular vesicles, summarizes their working principles, discusses their advantages and limitations and further illustrates their implementation in extracellular vesicle research. The small size and physicochemical heterogeneity of extracellular vesicles make their physical characterization and quantification an extremely challenging task. Currently, structure, size, buoyant density, optical properties and zeta potential have most commonly been studied. The concentration of vesicles in suspension can be expressed in terms of biomolecular or particle content depending on the method at hand. In addition, common quantification methods may either provide a direct quantitative measurement of vesicle concentration or solely allow for relative comparison between samples. The combination of complementary methods capable of detecting, characterizing and quantifying extracellular vesicles at a single particle level promises to provide new exciting insights into their modes of action and to reveal the existence of vesicle subpopulations fulfilling key biological tasks. Copyright © 2016 Elsevier B.V. All rights reserved.

Are biological effects of desert shrubs more important than physical effects on soil microorganisms?

Science.gov (United States)

Berg, Naama; Steinberger, Yosef

2010-01-01

Vegetation cover plays a major role in providing organic matter and in acting as a physical barrier, with both together contributing to the formation of "fertile islands," which play an active role in prolonging biological activity in desert ecosystems. By undertaking this study, a longterm research, we designed an experiment to separate the two components-the physical and biotic parts of the perennial plants-and to identify the factor that contributes the most to the ecosystem. The study site was located in the northern Negev Desert, Israel, where 50 Hammada scoparia shrubs and 50 artificial plants were randomly marked. Soil samples were collected monthly over 3 years of research at three locations: under the canopy of H. scoparia shrubs, in the vicinity of the artificial plants, and between the shrubs (control). The contribution to microbial activity was measured by evaluation of the microbial community functions in soil. The functional aspects of the microbial community that were measured were CO2 evolution, microbial biomass, microbial functional diversity, and the physiological profile of the community. The results of this study are presented in two ways: (1) according to the three locations/treatments; and (2) according to the phenological situation of the vegetation (annual and perennial plants) in the research field: the growing phase, the drying process, and the absence of annual plants. The only parameters that were found to affect microbial activity were the contribution of the organic matter of perennial shrubs and the growth of vegetation (annual and perennial) during the growing seasons. The physical component was found to have no effect on soil microbial functional diversity, which elucidates the important contribution of the desert shrub in enhancing biological multiplicity and activity.

Clinical oncology based upon radiation biology

International Nuclear Information System (INIS)

Hirata, Hideki

2016-01-01

This paper discussed the biological effects of radiation as physical energy, especially those of X-ray as electromagnetic radiation, by associating the position of clinical oncology with classical radiation cell biology as well as recent molecular biology. First, it described the physical and biological effects of radiation, cell death due to radiation and recovery, radiation effects at tissue level, and location information and dosage information in the radiotherapy of cancer. It also described the territories unresolved through radiation biology, such as low-dose high-sensitivity, bystander effects, etc. (A.O.)

Promoting Ocean Literacy through American Meteorological Society Programs

Science.gov (United States)

Passow, Michael; Abshire, Wendy; Weinbeck, Robert; Geer, Ira; Mills, Elizabeth

2017-04-01

American Meteorological Society Education Programs provide course materials, online and physical resources, educator instruction, and specialized training in ocean, weather, and climate sciences (https://www.ametsoc.org/ams/index.cfm/education-careers/education-program/k-12-teachers/). Ocean Science literacy efforts are supported through the Maury Project, DataStreme Ocean, and AMS Ocean Studies. The Maury Project is a summer professional development program held at the US Naval Academy designed to enhance effective teaching of the science, technology, engineering, and mathematics of oceanography. DataStreme Ocean is a semester-long course offered twice a year to participants nationwide. Created and sustained with major support from NOAA, DS Ocean explores key concepts in marine geology, physical and chemical oceanography, marine biology, and climate change. It utilizes electronically-transmitted text readings, investigations and current environmental data. AMS Ocean Studies provides complete packages for undergraduate courses. These include online textbooks, investigations manuals, RealTime Ocean Portal (course website), and course management system-compatible files. It can be offered in traditional lecture/laboratory, completely online, and hybrid learning environments. Assistance from AMS staff and other course users is available.

DEGRO 2009. Radiation oncology - medical physics - radiation biology. Abstracts; DEGRO 2009. Radioonkologie - Medizinische Physik - Strahlenbiologie. Abstracts

Energy Technology Data Exchange (ETDEWEB)

NONE

2009-06-15

The special volume of the journal covers the abstracts of the DEGRO 2009 meeting on radiation oncology, medical physics, and radiation biology, covering the following topics: seldom diseases, gastrointestinal tumors, radiation reactions and radiation protection, medical care and science, central nervous system, medical physics, the non-parvicellular lung carcinomas, ear-nose-and throat, target-oriented radiotherapy plus ''X'', radio-oncology - young academics, lymphomas, mammary glands, modern radiotherapy, life quality and palliative radiotherapy, radiotherapy of the prostate carcinoma, imaging for planning and therapy, the digital documentation in clinics and practical experiences, NMR imaging and tomography, hadrons - actual status in Germany, urinal tract oncology, radiotoxicity.

A singular evolutive extended Kalman filter to assimilate real in situ data in a 1-D marine ecosystem model

Directory of Open Access Journals (Sweden)

I. Hoteit

2003-01-01

Full Text Available A singular evolutive extended Kalman (SEEK filter is used to assimilate real in situ data in a water column marine ecosystem model. The biogeochemistry of the ecosystem is described by the European Regional Sea Ecosystem Model (ERSEM, while the physical forcing is described by the Princeton Ocean Model (POM. In the SEEK filter, the error statistics are parameterized by means of a suitable basis of empirical orthogonal functions (EOFs. The purpose of this contribution is to track the possibility of using data assimilation techniques for state estimation in marine ecosystem models. In the experiments, real oxygen and nitrate data are used and the results evaluated against independent chlorophyll data. These data were collected from an offshore station at three different depths for the needs of the MFSPP project. The assimilation results show a continuous decrease in the estimation error and a clear improvement in the model behavior. Key words. Oceanography: general (ocean prediction; numerical modelling – Oceanography: biological and chemical (ecosystems and ecology

TH-A-19A-05: Modeling Physics Properties and Biologic Effects Induced by Proton and Helium Ions

Energy Technology Data Exchange (ETDEWEB)

Taleei, R; Titt, U; Peeler, C; Guan, F; Mirkovic, D; Grosshans, D; Mohan, R [UT MD Anderson Cancer Center, Houston, TX (United States)

2014-06-15

Purpose: Currently, proton and carbon ions are used for cancer treatment. More recently, other light ions including helium ions have shown interesting physical and biological properties. The purpose of this work is to study the biological and physical properties of helium ions (He-3) in comparison to protons. Methods: Monte Carlo simulations with FLUKA, GEANT4 and MCNPX were used to calculate proton and He-3 dose distributions in water phantoms. The energy spectra of proton and He-3 beams were calculated with high resolution for use in biological models. The repair-misrepairfixation (RMF) model was subsequently used to calculate the RBE. Results: The proton Bragg curve calculations show good agreement between the three general purpose Monte Carlo codes. In contrast, the He-3 Bragg curve calculations show disagreement (for the magnitude of the Bragg peak) between FLUKA and the other two Monte Carlo codes. The differences in the magnitude of the Bragg peak are mainly due to the discrepancy in the secondary fragmentation cross sections used by the codes. The RBE for V79 cell lines is about 0.96 and 0.98 at the entrance of proton and He-3 ions depth dose respectively. The RBE increases to 1.06 and 1.59 at the Bragg peak of proton and He-3 ions. The results demonstrated that LET, microdosimetric parameters (such as dose-mean lineal energy) and RBE are nearly constant along the plateau region of Bragg curve, while all parameters increase within the Bragg peak and at the distal edge for both proton and He-3 ions. Conclusion: The Monte Carlo codes should revise the fragmentation cross sections to more accurately simulate the physical properties of He-3 ions. The increase in RBE for He-3 ions is higher than for proton beams at the Bragg peak.

Biological validation of physical coastal waters classification along the NE Atlantic region based on rocky macroalgae distribution

Science.gov (United States)

Ramos, Elvira; Puente, Araceli; Juanes, José Antonio; Neto, João M.; Pedersen, Are; Bartsch, Inka; Scanlan, Clare; Wilkes, Robert; Van den Bergh, Erika; Ar Gall, Erwan; Melo, Ricardo

2014-06-01

A methodology to classify rocky shores along the North East Atlantic (NEA) region was developed. Previously, biotypes and the variability of environmental conditions within these were recognized based on abiotic data. A biological validation was required in order to support the ecological meaning of the physical typologies obtained. A database of intertidal macroalgae species occurring in the coastal area between Norway and the South Iberian Peninsula was generated. Semi-quantitative abundance data of the most representative macroalgal taxa were collected in three levels: common, rare or absent. Ordination and classification multivariate analyses revealed a clear latitudinal gradient in the distribution of macroalgae species resulting in two distinct groups: one northern and one southern group, separated at the coast of Brittany (France). In general, the results based on biological data coincided with the results based on physical characteristics. The ecological meaning of the coastal waters classification at a broad scale shown in this work demonstrates that it can be valuable as a practical tool for conservation and management purposes.

Comparative Study of the Physical, Topographical and Biological Properties of Electrospinning PCL, PLLA, their Blend and Copolymer Scaffolds

Science.gov (United States)

Bolbasov, E.; Goreninskii, S.; Tverdokhlebov, S.; Mishanin, A.; Viknianshchuk, A.; Bezuidenhout, D.; Golovkin, A.

2018-05-01

Biodegradable polymers (blends, copolymers) could be the ideal materials for manufacturing of scaffolds for small diameter vascular graft. Such material characteristics as mechanical properties, chemical structure, nano- and micro topography, surface charge, porosity, wettability etc. are becoming the most important aspects for effectiveness of prosthesis biofunctionalization because of their great impact on cell adhesion, spreading, cell proliferation, differentiation and cell function. The aim of the study is to compare physical, topographical and biological properties of polycaprolactone (PCL), poly-L-lactic acid (PLLA), polycaprolactone + poly-L-lactic acid blend (PCL PLLA), L-lactide/Caprolactone copolymer (PLC7015) scaffolds fabricated with the same fiber thickness using electrospun technology. PCL PLLA scaffolds had the highest average pore area (pactive phase of adhesion process. We propose that physical and topographical properties of PCL, PLLA, their blend and copolymer are of a great dependence of chemical structure but could be changed during the manufacturing process that will lead to changes in biological properties.

Relationship Between Physical and Biological Properties on the Microscale: A Cross-Comparison Between Differing Coastal Domains

Science.gov (United States)

2013-09-01

persistent layers of particulate matter (defined by turbidity or chlorophyll); DISTRIBUTION STATEMENT A. Approved for public release; distribution...mesoscale physical processes on thin zooplankton layers at four sites along the west coast of the U.S. Estuaries and Coasts. 30: 575-590 Dekshenieks...Nash and J.N. Moum (2013), Stratification and mixing regimes in biological thin layers over the Mid- Atlantic bight, submitted to Limnol. Oceanogr

Biomaterials — where biology, physics, chemistry, engineering and medicine meet

Science.gov (United States)

Hing, K. A.

2008-03-01

The success or failure of an implant material in the body depends on a complex interaction between a synthetic 'foreign body' and the 'host tissue'. These interactions occur at many levels from the sub-microscopic level, where subtle changes in the surface physio-chemistry can substantially alter the nature of the biomaterial-host tissue interface, through the microscopical level (e.g. sensitivity to surface topography) to the macrostructural level (e.g. dependence on scaffold porosity). Thus the factors that control these responses are not only biologically determined but also mechanically, physically and chemically mediated, although identifying where one starts and the other finishes can be difficult. Design of a successful medical device has therefore to call on expertise within a wide range of disciplines. In terms of both investigating the basic science behind the factors which orchestrate a biological response and developing research tools that enable study of these responses. However, a medical device must also meet the economic and practical demands of health care professionals who will ultimately be using it in the clinic. Bone graft substitute materials are used in orthopaedics as an alternative or adjunct to autografting, a practice where the patient 'donates' bone from a healthy site to aid bone repair at a damaged or diseased site. These materials are used in a wide range of procedures from total hip revision to spinal fusion and their evolution over the last 10 years illustrates how an interdisciplinary approach has benefited their development and may lead to further innovation in the future.

Patterns in the Physical, Chemical, and Biological Composition of Icelandic Lakes and the Dominant Factors Controlling Variability Across Watersheds

Science.gov (United States)

Greco, A.; Strock, K.; Edwards, B. R.

2017-12-01

Fourteen lakes were sampled in the southern and western area of Iceland in June of 2017. The southern systems, within the Eastern Volcanic Zone, have minimal soil development and active volcanoes that produce ash input to lakes. Lakes in the Western Volcanic Zone were more diverse and located in older bedrock with more extensively weathered soil. Physical variables (temperature, oxygen concentration, and water clarity), chemical variables (pH, conductivity, dissolved and total nitrogen and phosphorus concentrations, and dissolved organic carbon concentration), and biological variables (algal biomass) were compared across the lakes sampled in these geographic regions. There was a large range in lake characteristics, including five to eighteen times higher algal biomass in the southern systems that experience active ash input to lakes. The lakes located in the Eastern Volcanic Zone also had higher conductivity and lower pH, especially in systems receiving substantial geothermal input. These results were analyzed in the context of more extensive lake sampling efforts across Iceland (46 lakes) to determine defining characteristics of lakes in each region and to identify variables that drive heterogeneous patterns in physical, chemical, and biological lake features within each region. Coastal systems, characterized by high conductivity, and glacially-fed systems, characterized by high iron concentrations, were unique from lakes in all other regions. Clustering and principal component analyses revealed that lake type (plateau, valley, spring-fed, and direct-runoff) was not the primary factor explaining variability in lake chemistry outside of the coastal and glacial lake types. Instead, lakes differentiated along a gradient of iron concentration and total nitrogen concentration. The physical and chemical properties of subarctic lakes are especially susceptible to both natural and human-induced environmental impacts. However, relatively little is known about the

Divorcing physics from biology? Optimal foraging and Lévy flights. Comment on "Liberating Lévy walk research from the shackles of optimal foraging" by A.M. Reynolds

Science.gov (United States)

Miramontes, Octavio

2015-09-01

Life on planet Earth emerged around 3.48 billion years ago [1]. The exact chain of events that lead to this is one of the most important unsolved problems in the history of science. Most of the research done so far is concerned mainly with understanding the source of the complex self-replicating machinery for the assembly of prebiotic organic molecules. This seems to be a problem in the field of biochemistry and very little attention has been given to the role played by the laws of physics in shaping the emergence of life and its evolutionary dynamics. Pioneering work by I. Prigogine and H. Haken, among others, showed that out-of-equilibrium thermodynamics and self-organization are physical phenomena acting right at the core of any emergent biological process. Furthermore, authors such as S.A. Kauffman and B.C. Goodwin [2,3] concluded that biological evolution is constrained by physical principles and have successfully asked the biological community to review the concept that natural selection and random mutations are the real sources of biological creativity. By doing this, a new generation of young biologists is now aware that the dynamics of living matter is not separated in any way from physical principles. A new Physics of Life is gaining momentum.

Temperature, salinity, chlorophyll pigments, nutrients and other parameters as part of the ECOHAB-GOM: The Ecology and Oceanography of Toxic Alexandrium Blooms in the Gulf of Maine project (NODC Accession 0064309)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The subproject described here is one of several components of ECOHAB-GOM: The Ecology and Oceanography of Toxic Alexandrium Blooms in the Gulf of Maine, a multi-PI,...

Marine parasites as biological tags in South American Atlantic waters, current status and perspectives.

Science.gov (United States)

Cantatore, D M P; Timi, J T

2015-01-01

Many marine fisheries in South American Atlantic coasts (SAAC) are threatened by overfishing and under serious risk of collapsing. The SAAC comprises a diversity of environments, possesses a complex oceanography and harbours a vast biodiversity that provide an enormous potential for using parasites as biological tags for fish stock delineation, a prerequisite for the implementation of control and management plans. Here, their use in the SAAC is reviewed. Main evidence is derived from northern Argentine waters, where fish parasite assemblages are dominated by larval helminth species that share a low specificity, long persistence and trophic transmission, parasitizing almost indiscriminately all available fish species. The advantages and constraints of such a combination of characteristics are analysed and recommendations are given for future research. Shifting the focus from fish/parasite populations to communities allows expanding the concept of biological tags from local to regional scales, providing essential information to delineate ecosystem boundaries for host communities. This new concept arose as a powerful tool to help the implementation of ecosystem-based approaches to fisheries management, the new paradigm for fisheries science. Holistic approaches, including parasites as biological tags for stock delineation will render valuable information to help insure fisheries and marine ecosystems against further depletion and collapse.

Nuclear medicine physics

CERN Document Server

De Lima, Joao Jose

2011-01-01

Edited by a renowned international expert in the field, Nuclear Medicine Physics offers an up-to-date, state-of-the-art account of the physics behind the theoretical foundation and applications of nuclear medicine. It covers important physical aspects of the methods and instruments involved in modern nuclear medicine, along with related biological topics. The book first discusses the physics of and machines for producing radioisotopes suitable for use in conventional nuclear medicine and PET. After focusing on positron physics and the applications of positrons in medicine and biology, it descr

Study of a multitrophical integrated aquatic system for the teaching-learning of the subjects physics, chemistry and biology in the bachelor

Science.gov (United States)

Ramirez, Eva; Espinosa, Cecilia

2017-04-01

In Mexico exist due to the lack of water in the City, which is where the College of Sciences and Humanities Orient (at UNAM) is located. This is because a point of view from the Chemical, Physics and Biology subjects is important to find learning strategies that motivate students to seek solutions to problems such as these. As Science Mentors, students were asked to propose water treatment from the homes they live in. From these investigations the students concluded that it was necessary to study in depth the wetlands like Multi-trophic Aquatic System that allow the treatment of gray water, so that a prototype of Micro-scale Multitrophic Aquatic System was set up in the laboratory, where the pH was measured , The concentration of oxygen, phosphates, from a Chemical perspective. As for the subject of Biology, we worked on the search for mycorrhizal fungi associated with the growth of plants for the purification of water. In physics we worked the sedimentation system. Artificial wetlands are man-made zones in which, in a controlled manner, mechanisms for the removal of contaminants present in wastewater, occurring in natural wetlands through physical, biological and chemical processes, are constructed mechanically and Is waterproofed to prevent losses of water to the subsoil, the use of substrates different from the original land for rooting the plants and their selection that will colonize the wetland benefit the recovery of water. The present project aims to structure an Artificial Wetland to carry out didactic strategies, activities with students, as well as work on research projects in the sciences of Chemistry, Physics and Biology. Through the application of chemical, biological and physical concepts and processes, so that students of the different semesters of the College of Sciences and Humanities Plantel Oriente, appropriate the relevant knowledge in the area of experimental sciences, developing thinking skills and achieve Significant learning, which are

Report of the Second Brazil/U.S. Workshop on Physical Oceanography Held 18-21 September 1989 at the Institute of Oceanography, University of Sao Paulo, Sao Paulo, Brazil

National Research Council Canada - National Science Library

Smith, Frank

1989-01-01

.... physical oceanographers met to present results of work in the tropical and South Atlantic Oceans, identify major scientific questions about that region, and discuss possible collaborative research opportunities...

Biological and physical induced oxygen dynamics in melting sea ice of the Fram Strait

DEFF Research Database (Denmark)

Glud, Ronnie; Rysgaard, Søren; Turner, Gavin

2014-01-01

correlation (EC) measurements on the underside of the ice revealed a light-dependent O2 exchange rate. However, the integrated signal resolved a net O2 uptake of 7.70 mmol m−2 d−1. The net O2 exchange was therefore dominated by the production of O2-depleted meltwater rather than biological activity. The EC......We investigated the production, consumption, and exchange of O2 in melting sea ice to assess the biological- and physical-induced O2 turnover. The underside of the ice was covered with 5–20 cm3 large, buoyant algal aggregates. Their gross primary production amounted to 0.49 mmol C m−2 d−1, which...... was 4.5 times higher than the primary production of sea ice–encrusted microalgae (0.11 mmol C m−2 d−1). The phototrophic biomass of the aggregates (2.94 mg chlorophyll a m−2) was six times higher than that encountered in the sea ice itself. Taxono-specific investigations strongly suggest...

Marine biology, intertidal ecology, and a new place for biology.

Science.gov (United States)

Benson, Keith R

2015-01-01

At the present time, there is considerable interest for the physical setting of science, that is, its actual 'place' of practice. Among historians of biology, place has been considered to be a crucial component for the study of ecology. Other historians have noted the 'built' environments (laboratories) for the study of biology along the seashore, even referring to these places in terms more applicable to vacation sites. In this paper, I examine the place of intertidal ecology investigations, both in terms of the physical space and the built space. Part of the examination will investigate the aesthetic aspect of the Pacific Coast, part will evaluate the unique character of the intertidal zone, and part will consider the construction of natural laboratories and built laboratories as characteristic places for biology.

DEGRO 2012. 18. annual congress of the German Radiation Oncology Society. Radiation oncology - medical physics - radiation biology. Abstracts

International Nuclear Information System (INIS)

Anon.

2012-01-01

The volume includes the abstracts of the contributions and posters of the 18th annual congress of the German Radiation Oncology Society DEGRO 2012. The lectures covered the following topics: Radiation physics, therapy planning; gastrointestinal tumors; radiation biology; stererotactic radiotherapy/breast carcinomas; quality management - life quality; head-neck-tumors/lymphomas; NSCL (non-small cell lung carcinomas); pelvic tumors; brain tumors/pediatric tumors. The poster sessions included the following topics: quality management, recurrent tumor therapy; brachytherapy; breast carcinomas and gynecological tumors; pelvis tumors; brain tumors; stereotactic radiotherapy; head-neck carcinomas; NSCL, proton therapy, supporting therapy; clinical radio-oncology, radiation biology, IGRT/IMRT.

Nature's longest threads new frontiers in the mathematics and physics of information in biology

CERN Document Server

Sreekantan, B V

2014-01-01

Organisms endowed with life show a sense of awareness, interacting with and learning from the universe in and around them. Each level of interaction involves transfer of information of various kinds, and at different levels. Each thread of information is interlinked with the other, and woven together, these constitute the universe — both the internal self and the external world — as we perceive it. They are, figuratively speaking, Nature's longest threads. This volume reports inter-disciplinary research and views on information and its transfer at different levels of organization by reputed scientists working on the frontier areas of science. It is a frontier where physics, mathematics and biology merge seamlessly, binding together specialized streams such as quantum mechanics, dynamical systems theory, and mathematics. The topics would interest a broad cross-section of researchers in life sciences, physics, cognition, neuroscience, mathematics and computer science, as well as interested amateurs, familia...

Decomposing the effects of ocean warming on chlorophyll a concentrations into physically and biologically driven contributions

International Nuclear Information System (INIS)

Olonscheck, D; Hofmann, M; Schellnhuber, H J; Worm, B

2013-01-01

Recently compiled observational data suggest a substantial decline in the global median chlorophyll a concentration over the 20th century, a trend that appears to be linked to ocean warming. Several modelling studies have considered changes in the ocean’s physical structure as a possible cause, while experimental work supports a biological mechanism, namely an observed increase in zooplankton grazing rate that outpaces phytoplankton production at higher temperatures. Here, we present transient simulations derived from a coupled ocean general circulation and carbon cycle model forced by atmospheric fields under unabated anthropogenic global warming (IPCC SRES A1FI scenario). The simulations account for both physical and biological mechanisms, and can reproduce about one quarter of the observed chlorophyll a decline during the 20th century, when using realistically parameterized temperature sensitivity of zooplankton metabolism (Q 10 between 2 and 4) and phytoplankton growth (Q 10 ∼ 1.9). Therefore, we have employed and re-calibrated the standard ecosystem model which assumes a lower temperature sensitivity of zooplankton grazing (Q 10 = 1.1049) by re-scaling phytoplankton growth rates and zooplankton grazing rates. Our model projects a global chlorophyll a decline of >50% by the end of the 21st century. While phytoplankton abundance and chlorophyll a experience pronounced negative effects, primary production and zooplankton concentrations are less sensitive to ocean warming. Although changes in physical structure play an important role, much of the simulated change in chlorophyll a and productivity is related to the uneven temperature sensitivity of the marine ecosystem. (letter)

Soil quality evaluation following the implementation of permanent cover crops in semi-arid vineyards. Organic matter, physical and biological soil properties

Energy Technology Data Exchange (ETDEWEB)

Virto, I.; Imaz, M. J.; Fernandez-Ugalde, O.; Urrutia, I.; Enrique, A.; Bescansa, P.

2012-07-01

Changing from conventional vineyard soil management, which includes keeping bare soil through intense tilling and herbicides, to permanent grass cover (PGC) is controversial in semi-arid land because it has agronomic and environmental advantages but it can also induce negative changes in the soil physical status. The objectives of this work were (i) gaining knowledge on the effect of PGC on the soil physical and biological quality, and (ii) identifying the most suitable soil quality indicators for vineyard calcareous soils in semi-arid land. Key soil physical, organic and biological characteristics were determined in a Cambic Calcisol with different time under PGC (1 and 5 years), and in a conventionally managed control. Correlation analysis showed a direct positive relationship between greater aggregate stability (WSA), soil-available water capacity (AWC), microbial biomass and enzymatic activity in the topsoil under PGC. Total and labile organic C concentrations (SOC and POM-C) were also correlated to microbial parameters. Factor analysis of the studied soil attributes using principal component analysis (PCA) was done to identify the most sensitive soil quality indicators. Earthworm activity, AWC, WSA, SOC and POM-C were the soil attributes with greater loadings in the two factors determined by PCA, which means that these properties can be considered adequate soil quality indicators in this agrosystem. These results indicate that both soil physical and biological attributes are different under PGC than in conventionally-managed soils, and need therefore to be evaluated when assessing the consequences of PGC on vineyard soil quality. (Author) 65 refs.

Physical, chemical, and biological properties of soil under soybean cultivation and at an adjacent rainforest in Amazonia

Science.gov (United States)

T.P. Beldini; R.C. Oliveira Junior; Michael Keller; P.B. de Camargo; P.M. Crill; A. Damasceno da Silva; D. Bentes dos Santos; D. Rocha de Oliveira

2015-01-01

Land-use change in the Amazon basin has occurred at an accelerated pace during the last decade, and it is important that the effects induced by these changes on soil properties are better understood. This study investigated the chemical, physical, and biological properties of soil in a field under cultivation of soy and rice, and at an adjacent primary rain forest....

Fusion of biological membranes

Indian Academy of Sciences (India)

Home; Journals; Pramana – Journal of Physics; Volume 64; Issue 6. Fusion of biological membranes. K Katsov M Müller M Schick. Invited Talks:- Topic 11. Biologically motivated problems (protein-folding models, dynamics at the scale of the cell; biological networks, evolution models, etc.) Volume 64 Issue 6 June 2005 pp ...

Biological condition gradient: Applying a framework for determining the biological integrity of coral reefs

Science.gov (United States)

The goals of the U.S. Clean Water Act (CWA) are to restore and maintain the chemical, physical and biological integrity of water resources. Although clean water is a goal, another is to safeguard biological communities by defining levels of biological integrity to protect aquatic...

Effect of physical exertion on the biological monitoring of exposure to various solvents following exposure by inhalation in human volunteers: III. Styrene.

Science.gov (United States)

Truchon, Ginette; Brochu, Martin; Tardif, Robert

2009-08-01

This study evaluated the impact of different work load intensities on biological indicators of styrene exposure. Four adult Caucasian men, aged 20 to 44 years, were recruited. Groups of 2-4 volunteers were exposed to 20 ppm of styrene in an exposure chamber according to scenarios involving either aerobic, muscular, or both types of physical exercise for 3 or 7 hr. The target intensities for each 30-min exercise period-interspaced with 15 min at rest-were the following: REST, 38 watts AERO (time-weighted average intensity), 34 watts AERO/MUSC, 49 watts AERO/MUSC, and 54 watts AERO for 7 hr and 22 watts MUSC for 3 hr. End-exhaled air samples were collected at 15 time points during and after 7-hr exposures for the determination of styrene concentrations. Urine samples were collected before the start of exposure, after the first 3 hr of exposure, and at the end of exposure for the determination of mandelic acid (MA) and phenylglyoxilic acid (PGA) concentrations. Compared with exposure at rest, styrene in alveolar air increased by a factor up to 1.7, while the sum of urinary MA and PGA increased by a factor ranging from 1.2 to 3.5, depending on the exposure scenario. Concentrations of biological indicators of styrene fluctuated with physical exertion and were correlated with the magnitude of the physical activity and pulmonary ventilation. Despite the physical exertion effect, urinary concentrations of styrene metabolites after a single-day exposure remain below the current biological exposure index value recommended by ACGIH; therefore, no additional health risk is expected. However, results shows that work load intensities must be considered in the interpretation of biological monitoring data and in the evaluation of the health risk associated with styrene exposure.

Radiation physics, biophysics, and radiation biology

International Nuclear Information System (INIS)

Hall, E.J.

1992-05-01

The following research programs from the Center for Radiological Research of Columbia University are described: Design and development of a new wall-less ultra miniature proportional counter for nanodosimetry; some recent measurements of ionization distributions for heavy ions at nanometer site sizes with a wall-less proportional counter; a calculation of exciton energies in periodic systems with helical symmetry: application to a hydrogen fluoride chain; electron energy-loss function in polynucleotide and the question of plasmon excitation; a non-parametric, microdosimetric-based approach to the evaluation of the biological effects of low doses of ionizing radiation; high-LET radiation risk assessment at medium doses; high-LET radiobiological effects: increased lesion severity or increased lesion proximity; photoneutrons generated by high energy medical linacs; the biological effectiveness of neutrons; implications for radiation protection; molecular characterization of oncogenes induced by neutrons; and the inverse dose-rate effect for oncogenic transformation by charged particles is LET dependent

Recovery of Areas Degraded by Mining Within the Amazon Forest: Interaction of the Physical Condition of Soil and Biological Activity

Science.gov (United States)

Ribeiro, A. I.; Mello, G. F.; Longo, R. M.; Fengler, F. H.; Peche Filho, A., Sr.

2017-12-01

One of the greatest natural riches of Brazil is the Amazon rainforest. The Amazon region is known for its abundance of mineral resources, and may include topaz, oil, and especially cassiterite. In this scope, the mining sector in Brazil has great strategic importance because it accounts for approximately 30% of the country's exports with a mineral production of 40 billion dollars (Brazilian Mining Institute, 2015). In this scenario, as a consequence of mining, the Amazonian ecosystem has been undergoing a constant process of degradation. An important artifice in the exploitation of mineral resources is the rehabilitation and/or recovery of degraded areas. This recovery requires the establishment of degradation indicators and also the quality of the soil associated with its biota, since the Amazonian environment is dynamic, heterogeneous and complex in its physical, chemical and biological characteristics. In this way, this work presupposes that it is possible to characterize the different stages of recovery of tillage floor areas in deactivated cassiterite mines, within the Amazonian forest, in order to evaluate the interactions between the level of biological activity (Serrapilheira Height, Coefficient Metabolic, Basal Breath) and physical soil characteristics (aggregate DMG, Porosity, Total Soil Density, Moisture Content), through canonical correlation analysis. The results present correlations between the groups of indicators. Thus, from the use of the groups defined by canonical correlations, it was possible to identify the response of the set of physical and biological variables to the areas at different stages of recovery.

Darwin's legacy: why biology is not physics, or why evolution has not become a common sense.

Science.gov (United States)

Singh, Rama S

2011-10-01

Cosmology and evolution together have enabled us to look deep into the past and comprehend evolution-from the big bang to the cosmos, from molecules to humans. Here, I compare the nature of theories in biology and physics and ask why physical theories get accepted by the public without necessarily comprehending them but biological theories do not. Darwin's theory of natural selection, utterly simple in its premises but profound in its consequences, is not accepted widely. Organized religions, and creationists in particularly, have been the major critic of evolution, but not all opposition to evolution comes from organized religions. A great many people, between evolutionary biologists on one hand and creationists on the other, many academics included, who may not be logically opposed to evolution nevertheless do not accept it. This is because the process of and the evidence for evolution are invisible to a nonspecialist, or the theory may look too simple to explain complex traits to some, or because people compare evolution against God and find evolutionary explanations threatening to their beliefs. Considering how evolution affects our lives, including health and the environment to give just two examples, a basic course in evolution should become a required component of all our college and university educational systems.

Transport and transfer rates in the waters of the continental shelf. Annual report

International Nuclear Information System (INIS)

Biscaye, P.E.; Broecker, W.S.; Feely, H.W.; Gerard, R.D.

1976-04-01

The report is to the Energy Research and Development Administration on accomplishments of the Lamont-Doherty Geological Observatory geochemistry and physical oceanography groups during the 1975-1976 funding period on grant E(11-1)2185. Goals are to obtain detailed, quantitative knowledge of the rates of mixing within coastal waters of the New York Bight and across the continental slope and the exchange of water masses and species transported within them between shelf and Atlantic Ocean waters. The research is aimed at understanding the chemical, physical, and biological processes which control the origin, dispersal, and fate of particulate matter and trace metals, and to ultimately model the impact of energy related pollutants on the continental shelf

Meeting report: Ocean ‘omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013)

Science.gov (United States)

Gilbert, Jack A; Dick, Gregory J.; Jenkins, Bethany; Heidelberg, John; Allen, Eric; Mackey, Katherine R. M.

2014-01-01

The National Science Foundation’s EarthCube End User Workshop was held at USC Wrigley Marine Science Center on Catalina Island, California in August 2013. The workshop was designed to explore and characterize the needs and tools available to the community that is focusing on microbial and physical oceanography research with a particular emphasis on ‘omic research. The assembled researchers outlined the existing concerns regarding the vast data resources that are being generated, and how we will deal with these resources as their volume and diversity increases. Particular attention was focused on the tools for handling and analyzing the existing data, on the need for the construction and curation of diverse federated databases, as well as development of shared, interoperable, “big-data capable” analytical tools. The key outputs from this workshop include (i) critical scientific challenges and cyber infrastructure constraints, (ii) the current and future ocean ‘omics science grand challenges and questions, and (iii) data management, analytical and associated and cyber-infrastructure capabilities required to meet critical current and future scientific challenges. The main thrust of the meeting and the outcome of this report is a definition of the ‘omics tools, technologies and infrastructures that facilitate continued advance in ocean science biology, marine biogeochemistry, and biological oceanography. PMID:25197495

Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013).

Science.gov (United States)

Gilbert, Jack A; Dick, Gregory J; Jenkins, Bethany; Heidelberg, John; Allen, Eric; Mackey, Katherine R M; DeLong, Edward F

2014-06-15

The National Science Foundation's EarthCube End User Workshop was held at USC Wrigley Marine Science Center on Catalina Island, California in August 2013. The workshop was designed to explore and characterize the needs and tools available to the community that is focusing on microbial and physical oceanography research with a particular emphasis on 'omic research. The assembled researchers outlined the existing concerns regarding the vast data resources that are being generated, and how we will deal with these resources as their volume and diversity increases. Particular attention was focused on the tools for handling and analyzing the existing data, on the need for the construction and curation of diverse federated databases, as well as development of shared, interoperable, "big-data capable" analytical tools. The key outputs from this workshop include (i) critical scientific challenges and cyber infrastructure constraints, (ii) the current and future ocean 'omics science grand challenges and questions, and (iii) data management, analytical and associated and cyber-infrastructure capabilities required to meet critical current and future scientific challenges. The main thrust of the meeting and the outcome of this report is a definition of the 'omics tools, technologies and infrastructures that facilitate continued advance in ocean science biology, marine biogeochemistry, and biological oceanography.

Radiation biology. Chapter 20

Energy Technology Data Exchange (ETDEWEB)

Wondergem, J. [International Atomic Energy Agency, Vienna (Austria)

2014-09-15

Radiation biology (radiobiology) is the study of the action of ionizing radiations on living matter. This chapter gives an overview of the biological effects of ionizing radiation and discusses the physical, chemical and biological variables that affect dose response at the cellular, tissue and whole body levels at doses and dose rates relevant to diagnostic radiology.

The integration of the contents of the subject Physics-Chemistry (I in Biology-Chemistry specialty

Directory of Open Access Journals (Sweden)

M. Sc. Luis AZCUY LORENZ

2017-12-01

Full Text Available This work is the result of a research task developed in the Natural Sciences Education Department during 2013-2014 academic year, and it emerged from the necessity of solving some insufficiencies in the use of the real potentialities offered by the content of the subject Physics-Chemistry (I, that is part of the curriculum of the Biology-Chemistry career. Its main objective is to offer a set of exercises to contribute to achieve the integration of contents from the subject Physics-chemistry (I in the mentioned career at «Ignacio Agramonte Loynaz» University of Camaguey. The exercises proposed are characterized for being related to the real practice and to other subjects of the career. Their implementation through review lessons, partial tests and final evaluations during the formative experiment made possible a better academic result in the learners overall performance.

The Physical Oceanography of the Alboran Sea.

Science.gov (United States)

1987-03-01

concentrated in Lanoix, 1974) fluctuated about 38.47 ppt and 13.15’C , ie northern part (Fig. 20). Its path in the eastern basin (in situ ). Bryden et al...inclinacion transversal de las W ater. aguas atlanticas y Mediterraneas en el Estrecho de Gibraltar. Boletin del Instituto Espaiol de X1. References

Mentoring Program for Women in Physical Oceanography

Science.gov (United States)

Lozier, M. Susan

2006-03-01

Efforts over the past several decades toward increasing the number of women entering science and engineering fields have largely been successful, with undergraduate and graduate school enrollments averaging between 30 and 50 percent women (see Nelson Diversity Survey, http://cheminfo.chem.ou.edu/faculty/djn/diversity/ top50.html). Ph.D. attainments show similar progress. However, the percentage of women occupying tenure-track positions has not risen commensurably. Across the board, women in science and engineering fill on average only 15 to 25 percent of academic positions. Since the number of women in graduate school has been sufficiently large for at least a decade, it is difficult to ascribe the lower percentage of women in faculty positions to a small pool of potential candidates. As reported in the Chronicle of Higher Education (3 December 2004), the disparity between the number of women trained in a field and the number of women occupying positions in that field is instead attributed by some to subtle biases that keep women out of research or academic positions; others, according to the report, argue that women are simply staying away of their own accord from these positions.

Physical Oceanography of the Gulf of Aden