WorldWideScience

Sample records for biological imaging optical

  1. Optical imaging of biological tissues

    Science.gov (United States)

    Bouza Dominguez, Jorge

    In this thesis, a new time-dependent model for describing light propagation in biological media is proposed. The model is based on the simplified spherical harmonics approximation and is represented by a set of coupled parabolic partial differential equations (TD-pSPN equations). In addition, the model is extended for modeling the time-dependent response of fluorescent agents in biological tissues and the ensuing time-domain propagation of light therein. In a comparison with Monte Carlo simulations, it is shown that the TD-pSPN equations present unique features in its derivation that makes it a more accurate alternative to the diffusion equation (DE). The TD-pSPN model (for orders N > 1) outperforms the DE in the description of the propagation of light in near-nondiffusive media and in all the physical situations where DE fails. Often, only small orders of the SP N approximation are needed to obtain accurate results. A diffuse optical tomography (DOT) algorithm is also implemented based on the TD-pSPN equations as the forward model using constrained optimization methods. The algorithm uses time-dependent (TD) data directly. Such an approach is benefited from both the accuracy of the SPN models and the richness of TD data. In the calculation of the gradient of the objective function, a time-dependent adjoint differentiation method is introduced that reduces computation time. Several numerical experiments are performed for small geometry media with embedded inclusions that mimic small animal imaging. In these experiments, the values of the optical coefficients are varied within realistic bounds that are representative of those found in the range of the near-infrared spectrum, including high absorption values. Single and multi-parameter reconstructions (absorption and diffusion coefficients) are performed. The reconstructed images based on the TD-pSPN equations (N > 1) give better estimates of the optical properties of the media than the DE. On the other hand

  2. Scintillating Optical Fiber Imagers for biology

    International Nuclear Information System (INIS)

    S.O.F.I (Scintillating Optical Fiber Imager) is a detector developed to replace the autoradiographic films used in molecular biology for the location of radiolabelled (32P) DNA molecules in blotting experiments. It analyses samples on a 25 x 25 cm2 square area still 25 times faster than autoradiographic films, with a 1.75 and 3 mm resolution for two orthogonal directions. This device performs numerised images with a dynamic upper than 100 which allows the direct quantitation of the analysed samples. First, this thesis describes the S.O.F.I. development (Scintillating Optical Fibers, coding of these fibers and specific electronic for the treatment of the Multi-Anode Photo-Multiplier signals) and experiments made in collaboration with molecular biology laboratories. In a second place, we prove the feasibility of an automatic DNA sequencer issued from S.O.F.I

  3. Molecular probes for nonlinear optical imaging of biological membranes

    Science.gov (United States)

    Blanchard-Desce, Mireille H.; Ventelon, Lionel; Charier, Sandrine; Moreaux, Laurent; Mertz, Jerome

    2001-12-01

    Second-harmonic generation (SHG) and two-photon excited fluorescence (TPEF) are nonlinear optical (NLO) phenomena that scale with excitation intensity squared, and hence give rise to an intrinsic 3-dimensional resolution when used in microscopic imaging. TPEF microscopy has gained widespread popularity in the biology community whereas SHG microscopy promises to be a powerful tool because of its sensitivity to local asymmetry. We have implemented an approach toward the design of NLO-probes specifically adapted for SHG and/or TPEF imaging of biological membranes. Our strategy is based on the design of nanoscale amphiphilic NLO-phores. We have prepared symmetrical bolaamphiphilic fluorophores combining very high two-photon absorption (TPA) cross-sections in the visible red region and affinity for cellular membranes. Their incorporation and orientation in lipid membranes can be monitored via TPEF anisotropy. We have also prepared amphiphilic push-pull chromophores exhibiting both large TPA cross-sections and very large first hyperpolarizabilities in the near-IR region. These NLO-probes have proved to be particularly useful for imaging of biological membranes by simultaneous SHG and TPEF microscopy and offer attractive prospects for real-time imaging of fundamental biological processes such as adhesion, fusion or reporting of membrane potentials.

  4. Biologically relevant photoacoustic imaging phantoms with tunable optical and acoustic properties.

    Science.gov (United States)

    Vogt, William C; Jia, Congxian; Wear, Keith A; Garra, Brian S; Joshua Pfefer, T

    2016-10-01

    Established medical imaging technologies such as magnetic resonance imaging and computed tomography rely on well-validated tissue-simulating phantoms for standardized testing of device image quality. The availability of high-quality phantoms for optical-acoustic diagnostics such as photoacoustic tomography (PAT) will facilitate standardization and clinical translation of these emerging approaches. Materials used in prior PAT phantoms do not provide a suitable combination of long-term stability and realistic acoustic and optical properties. Therefore, we have investigated the use of custom polyvinyl chloride plastisol (PVCP) formulations for imaging phantoms and identified a dual-plasticizer approach that provides biologically relevant ranges of relevant properties. Speed of sound and acoustic attenuation were determined over a frequency range of 4 to 9 MHz and optical absorption and scattering over a wavelength range of 400 to 1100 nm. We present characterization of several PVCP formulations, including one designed to mimic breast tissue. This material is used to construct a phantom comprised of an array of cylindrical, hemoglobin-filled inclusions for evaluation of penetration depth. Measurements with a custom near-infrared PAT imager provide quantitative and qualitative comparisons of phantom and tissue images. Results indicate that our PVCP material is uniquely suitable for PAT system image quality evaluation and may provide a practical tool for device validation and intercomparison. PMID:26886681

  5. Development of Spectral Domain Optical Coherence Tomography for in vivo Functional Imaging of Biological Tissues

    Science.gov (United States)

    An, Lin

    Optical coherence tomography is a rapidly developing optical imaging modality capable of noninvasively providing depth resolved information of biological tissue at micrometer scale. In this thesis, we described several OCT technologies that can be used to double the imaging depth, realize functional vasculature imaging of biological tissue and increase the imaging speed of OCT system. Aim 1: Use of a scanner to introduce spatial frequency modulation to OCT spectral interferograms for in vivo full-range Fourier-domain optical coherence tomography. A novel method was developed that could easily introduce a modulation frequency onto the X-direction (i.e., B-scan) of the FDOCT scanning system, enabling full-range Fourier-domain Optical Coherence Tomography (frFDOCT). Compared to the conventional FDOCT system, the newly developed frFDOCT system can provide increased system sensitivity and deeper imaging depth. The previous technology that can achieve frFDOCT either needed multiple steps for data capturing, which is time consuming, or required additional components which increased the system's complexity. The newly developed method generates a modulation spatial frequency in the spectral interferogram by simply offsetting the probe beam at the X-scanner. Aim 2: Using optical micro-angiography to achieve in vivo volumetric imaging of vascular perfusion within human retina and choroids. Optical Micro-Angiography (OMAG) is a functional extension of FDOCT technology. It can achieve visualization of vasculature network of biological tissue. In order to apply the OMAG method to image vasculature map of human retina and choroid, a phase compensation algorithm was developed, which could minimize the motion artifacts generated by the movements of human eye and head. Aim 3: Developing ultrahigh sensitive optical micro-angiography to achieve micro vasculature imaging of biological tissue. To improve the vasculature image quality, we developed ultrahigh sensitive OMAG (UHS

  6. Biomedical optical imaging

    CERN Document Server

    Fujimoto, James G

    2009-01-01

    Biomedical optical imaging is a rapidly emerging research area with widespread fundamental research and clinical applications. This book gives an overview of biomedical optical imaging with contributions from leading international research groups who have pioneered many of these techniques and applications. A unique research field spanning the microscopic to the macroscopic, biomedical optical imaging allows both structural and functional imaging. Techniques such as confocal and multiphoton microscopy provide cellular level resolution imaging in biological systems. The integration of this tech

  7. Imaging a full set of optical scattering properties of biological tissue by inverse spectroscopic optical coherence tomography

    OpenAIRE

    Yi, Ji; Backman, Vadim

    2012-01-01

    We here develop a method to measure and image the full optical scattering properties by inverse spectroscopic optical coherence tomography (ISOCT). Tissue is modelled as a medium with continuous refractive index (RI) fluctuation and such a fluctuation is described by the RI correlation functions. Under the first-order Born approximation, the forward model is established for ISOCT. By measuring optical quantities of tissue including the scattering power (SP) of the OCT spectrum, the reflection...

  8. Imaging a full set of optical scattering properties of biological tissue by inverse spectroscopic optical coherence tomography.

    Science.gov (United States)

    Yi, Ji; Backman, Vadim

    2012-11-01

    We here develop a method to measure and image the full optical scattering properties by inverse spectroscopic optical coherence tomography (ISOCT). Tissue is modelled as a medium with continuous refractive index (RI) fluctuation and such a fluctuation is described by the RI correlation functions. Under the first-order Born approximation, the forward model is established for ISOCT. By measuring optical quantities of tissue including the scattering power of the OCT spectrum, the reflection albedo α defined as the ratio of scattering coefficient μ(s), and the backscattering coefficient μ(b), we are able to inversely deduce the RI correlation function and image the full set of optical scattering properties. PMID:23114323

  9. Optics of Biological Particles

    CERN Document Server

    Hoekstra, Alfons; Videen, Gorden

    2007-01-01

    This book covers the optics of single biological particles, both theory and experiment, with emphasis on Elastic Light Scattering and Fluorescence. It deals with the optics of bacteria (bio-aerosols), marine particles (selected phytoplankton communities) and red and white blood cells. Moreover, there are dedicated chapters on a general theory for scattering by a cell, and modelling and simulation of scattering by inhomogeneous biological cells. Finally, one chapter is dedicated to astro-biological signatures, discussing the possibilities for detecting non-terrestrial biological material. The volume has up-to-date discussions on new experimental and numerical techniques, and many examples of applications of these techniques in real-life systems, as used to detect and characterize e.g. biological warfare agents or human blood cells.

  10. Signal and Image Processing of Optical Coherence Tomography at 1310 nm Wavelength for Non Biological Samples

    Directory of Open Access Journals (Sweden)

    Yogesh Rao

    2015-04-01

    Full Text Available OCT is a recently developed optical interferometric technique for non-invasive diagnostic medical imaging in vivo; the most sensitive optical imaging modality.OCT finds its application in ophthalmology, blood flow estimation and cancer diagnosis along with many non biomedical applications. The main advantage of OCT is its high resolution which is in µm range and depth of penetration in mm range. Unlike other techniques like X rays and CT scan, OCT does not comprise any x ray source and therefore no radiations are involved. This research work discusses the basics of spectral domain OCT (SD-OCT, experimental setup, data acquisition and signal processing involved in OCT systems. Simulation of OCT involving modelling and signal processing, carried out on Lab VIEW platform has been discussed. Using the experimental setup, some of the non biomedical samples have been scanned. The signal processing and image processing of the scanned data was carried out in MATLAB and Lab VIEW, some of the results thus obtained have been discussed in the end.

  11. Section on High Resolution Optical Imaging (HROI)

    Data.gov (United States)

    Federal Laboratory Consortium — The Section on High Resolution Optical Imaging (HROI) develops novel technologies for studying biological processes at unprecedented speed and resolution. Research...

  12. Optical image encryption topology.

    Science.gov (United States)

    Yong-Liang, Xiao; Xin, Zhou; Qiong-Hua, Wang; Sheng, Yuan; Yao-Yao, Chen

    2009-10-15

    Optical image encryption topology is proposed based on the principle of random-phase encoding. Various encryption topological units, involving peer-to-peer, ring, star, and tree topologies, can be realized by an optical 6f system. These topological units can be interconnected to constitute an optical image encryption network. The encryption and decryption can be performed in both digital and optical methods.

  13. Optical imaging and spectroscopy

    CERN Document Server

    Brady, David J

    2009-01-01

    An essential reference for optical sensor system design This is the first text to present an integrated view of the optical and mathematical analysis tools necessary to understand computational optical system design. It presents the foundations of computational optical sensor design with a focus entirely on digital imaging and spectroscopy. It systematically covers: Coded aperture and tomographic imaging Sampling and transformations in optical systems, including wavelets and generalized sampling techniques essential to digital system analysis Geometric, wave, and statis

  14. Optical technology in medicine and biology: Introduction

    Science.gov (United States)

    Burns, Stephen A.; Ediger, Marwood N.; Richards-Kortum, Rebecca R.

    1996-07-01

    This feature issue on Optical Technology in Medicine and Biology is the inaugural feature issue for a new section of Applied Optics devoted to the application of advanced optical techniques to problems in biology, medicine, and biotechnology. Although Applied Optics has always been open to research in these areas, the Optical Society's board of editors decided that the importance of this type of research merited a more prominent and focused presentation. As a result the Optical Technology division of Applied Optics was renamed the Optical Technology and Biomedical Optics division, and four new members were appointed to the Applied Optics editorial board. In addition, a call for papers was issued for an inaugural feature issue. The papers appearing in the current issue are those that were submitted in response to that call for papers and that passed the rite of peer review. The quality and breadth of the papers demonstrate the wisdom of the society's decision. We have important contributions affecting such diverse areas as biologic imaging, drug delivery, tissue optics, and laser surgery. In addition, Applied Optics has seen a sharp increase in the number of regular submissions involving biomedical optics, and the quality and breadth of these papers also bode well for the future of the publication. In addition there is already another joint Applied Optics/Journal of the Optical Society of America A Feature Issue in process, entitled Diffusing Photons in Turbid Media, scheduled for publication in January 1997. We invite you to read the papers and to participate in the future of Biomedical Optics and Optical Biotechnology by submitting manuscripts for review by your peers. We thank the OSA board of editors for this opportunity, and we encourage our colleagues to submit their papers directly to the Optical Society in the future and to share ideas and thoughts on this new area of Applied Optics.

  15. Design and implementation of optical imaging and sensor systems for characterization of deep-sea biological camouflage

    Science.gov (United States)

    Haag, Justin Mathew

    The visual ecology of deep-sea animals has long been of scientific interest. In the open ocean, where there is no physical structure to hide within or behind, diverse strategies have evolved to solve the problem of camouflage from a potential predator. Simulations of specific predator-prey scenarios have yielded estimates of the range of possible appearances that an animal may exhibit. However, there is a limited amount of quantitative information available related to both animal appearance and the light field at mesopelagic depths (200 m to 1000 m). To mitigate this problem, novel optical instrumentation, taking advantage of recent technological advances, was developed and is described in this dissertation. In the first half of this dissertation, the appearance of mirrored marine animals is quantitatively evaluated. A portable optical imaging scatterometer was developed to measure angular reflectance, described by the bidirectional reflectance distribution function (BRDF), of biological specimens. The instrument allows for BRDF capture from samples of arbitrary size, over a significant fraction of the reflectance hemisphere. Multiple specimens representing two species of marine animals, collected at mesopelagic depths, were characterized using the scatterometer. Low-dimensional parametric models were developed to simplify use of the data sets, and to validate the BRDF method. Results from principal component analysis confirm that BRDF measurements can be used to study intra- and interspecific variability of mirrored marine animal appearance. Collaborative efforts utilizing the BRDF data sets to develop physically-based scattering models are underway. In the second half of this dissertation, another key part of the deep-sea biological camouflage problem is examined. Two underwater radiometers, capable of low-light measurements, were developed to address the lack of available information related to the deep-sea light field. Quantitative comparison of spectral

  16. Optical breast imaging

    NARCIS (Netherlands)

    van de Ven, S.M.W.Y.

    2011-01-01

    Optical breast imaging uses near-infrared light to assess the optical properties of breast tissue. It can be performed relying on intrinsic breast tissue contrast alone or with the use of exogenous imaging agents that accumulate at the tumor site. Different tissue components have unique scattering a

  17. Optical interferometry for biology and medicine

    CERN Document Server

    Nolte, David D

    2012-01-01

    This book presents the fundamental physics of optical interferometry as applied to biophysical, biological and medical research. Interference is at the core of many types of optical detection and is a powerful probe of cellular and tissue structure in interfererence microscopy and in optical coherence tomography. It is also the root cause of speckle and other imaging artefacts that limit range and resolution. For biosensor applications, the inherent sensitivity of interferometry enables ultrasensitive detection of molecules in biological samples for medical diagnostics. In this book, emphasis is placed on the physics of light scattering, beginning with the molecular origins of refraction as light propagates through matter, and then treating the stochastic nature of random fields that ultimately dominate optical imaging in cells and tissue. The physics of partial coherence plays a central role in the text, with a focus on coherence detection techniques that allow information to be selectively detected out of ...

  18. Optical scatter imaging using digital Fourier microscopy

    CERN Document Server

    Seet, K Y T; Meredith, P; Zvyagin, A V

    2007-01-01

    An approach reported recently by Alexandrov et al. on optical scatter imaging, termed digital Fourier microscopy (DFM), represents an adaptation of digital Fourier holography to selective imaging of biological matter. Holographic mode of recording of the sample optical scatter enables reconstruction of the sample image. Form-factor of the sample constituents provides a basis for discrimination of these constituents implemented via flexible digital Fourier filtering at the post processing stage. Like in the dark-field microscopy, the DFM image contrast appears to improve due to the suppressed optical scatter from extended sample structures. In this paper, we present theoretical and experimental study of DFM using biological phantom that contains polymorphic scatterers.

  19. Optical imaging and metrology

    CERN Document Server

    Osten, Wolfgang

    2012-01-01

    A comprehensive review of the state of the art and advances in the field, while also outlining the future potential and development trends of optical imaging and optical metrology, an area of fast growth with numerous applications in nanotechnology and nanophysics. Written by the world's leading experts in the field, it fills the gap in the current literature by bridging the fields of optical imaging and metrology, and is the only up-to-date resource in terms of fundamental knowledge, basic concepts, methodologies, applications, and development trends.

  20. Optical probes in biology

    CERN Document Server

    Zhang, Jin; Schultz, Carsten

    2015-01-01

    Introduction and BasicsEngineering of Optimized Fluorescent Proteins: An Overview from a Cyan and FRET Perspective Lindsay Haarbosch, Joachim Goedhart, Mark A. Hink, Laura van Weeren, Daphne S. Bindels, and Theodorus W.J. GadellaFluorescent Imaging Techniques: FRET and Complementary Methods Stefan Terjung and Yury BelyaevTracking: Sensors for Tracking BiomoleculesProtein-Based Calcium Sensors Thomas Thestrup and Oliver GriesbeckMonitoring Membrane Lipids with Protein Domains Expressed in Living Cells Peter Varnai

  1. Acousto-optic laser optical feedback imaging

    CERN Document Server

    Jacquin, Olivier; Lacot, Eric; Hugon, Olivier; De Chatellus, Hugues Guillet; François, Ramaz

    2012-01-01

    We present a photon noise and diffraction limited imaging method combining the imaging laser and ultrasonic waves. The laser optical feedback imaging (LOFI) technique is an ultrasensitive imaging method for imaging objects through or embedded within a scattering medium. However, LOFI performances are dramatically limited by parasitic optical feedback occurring in the experimental setup. In this work, we have tagged the ballistic photons by an acousto-optic effect in order to filter the parasitic feedback effect and to reach the theoretical and ultimate sensitivity of the LOFI technique. We present the principle and the experimental setup of the acousto-optic laser optical feedback imaging (AO-LOFI) technique, and we demonstrate the suppression of the parasitic feedback.

  2. Optical image encryption based on diffractive imaging.

    Science.gov (United States)

    Chen, Wen; Chen, Xudong; Sheppard, Colin J R

    2010-11-15

    In this Letter, we propose a method for optical image encryption based on diffractive imaging. An optical multiple random phase mask encoding system is applied, and one of the phase-only masks is selected and laterally translated along a preset direction during the encryption process. For image decryption, a phase retrieval algorithm is proposed to extract a high-quality plaintext. The feasibility and effectiveness of the proposed method are demonstrated by numerical results. The proposed method can provide a new strategy instead of conventional interference methods, and it may open up a new research perspective for optical image encryption.

  3. Nonlinear spectral imaging of biological tissues

    Science.gov (United States)

    Palero, J. A.

    2007-07-01

    The work presented in this thesis demonstrates live high resolution 3D imaging of tissue in its native state and environment. The nonlinear interaction between focussed femtosecond light pulses and the biological tissue results in the emission of natural autofluorescence and second-harmonic signal. Because biological intrinsic emission is generally very weak and extends from the ultraviolet to the visible spectral range, a broad-spectral range and high sensitivity 3D spectral imaging system is developed. Imaging the spectral characteristics of the biological intrinsic emission reveals the structure and biochemistry of the cells and extra-cellular components. By using different methods in visualizing the spectral images, discrimination between different tissue structures is achieved without the use of any stain or fluorescent label. For instance, RGB real color spectral images of the intrinsic emission of mouse skin tissues show blue cells, green hair follicles, and purple collagen fibers. The color signature of each tissue component is directly related to its characteristic emission spectrum. The results of this study show that skin tissue nonlinear intrinsic emission is mainly due to the autofluorescence of reduced nicotinamide adenine dinucleotide (phosphate), flavins, keratin, melanin, phospholipids, elastin and collagen and nonlinear Raman scattering and second-harmonic generation in Type I collagen. In vivo time-lapse spectral imaging is implemented to study metabolic changes in epidermal cells in tissues. Optical scattering in tissues, a key factor in determining the maximum achievable imaging depth, is also investigated in this work.

  4. Photo-magnetic Imaging: Resolving Optical Contrast at MRI resolution

    OpenAIRE

    Lin, Yuting; Gao, Hao; Thayer, David; Luk, Alex L.; Gulsen, Gultekin

    2013-01-01

    In this paper, we establish the mathematical framework of a novel imaging technique, namely Photo-magnetic Imaging (PMI). PMI uses laser to illuminate biological tissues and measure the induced temperature variations using magnetic resonance imaging (MRI). PMI overcomes the limitation of conventional optical imaging and allows imaging of optical contrast at MRI spatial resolution. The image reconstruction for PMI, using a finite element-based algorithm with iterative approach, is presented in...

  5. Sound and Image Processing with Optical Biocomputers

    OpenAIRE

    Jones, Cameron L

    2003-01-01

    This paper introduces a new method to perform signal processing using cells or atoms to synthesize variation in digital data stored in optical format. Interfacing small-scale biological or chemical systems with information stored on CD, DVD and related disc media has been termed molecular media. This is defined as micron or nanoscale interference and/or augmentation of optical data translation with a specific focus on sound and image processing. The principle of this approach uses cells with ...

  6. Biological imaging in radiation oncology

    Energy Technology Data Exchange (ETDEWEB)

    Grosu, A.L.; Wiedenmann, N.; Molls, M. [Klinik und Poliklinik fuer Strahlentherapie und Radiologische Onkologie Klinikum rechts der Isar, Technical Univ. of Munich (Germany)

    2005-07-01

    The goal of this study was to discuss the value of integrating biological imaging (PET, SPECT, MRS etc.) in radiation treatment planning and monitoring. Studies in patients with brain tumors have shown that, compared to CT and MRI alone, the image fusion of CT/MRI and amino acid SPECT or PET allows a more correct delineation of gross tumor volume (GTV) and planning target volume (PTV). For FDG-PET, comparable results with different techniques are reported in the literature also for bronchial carcinoma, ear-nose-and-throat tumors, and cervical carcinoma, or, in the case of MRS, for prostate cancer. Imaging of hypoxia, cell proliferation, apoptosis, tumor angiogenesis, and gene expression leads to the identification of differently aggressive areas of a biologically inhomogeneous tumor mass that can be individually and more appropriately targeted using innovative IMRT. Thus, a biological, inhomogeneous dose distribution can be generated, the so-called dose painting. In addition, the biological imaging can play a significant role in the evaluation of the therapy response after radiochemotherapy. Clinical studies in ear-nose-and-throat tumors, bronchial carcinoma, esophagus carcinoma, and cervical carcinoma suggest that the sensitivity and specificity of FDG-PET for the therapy response are higher compared to anatomical imaging (CT and MRI). Clinical and experimental studies are required to define the real impact of these investigations in radiation treatment planning, and especially in the evaluation of therapy response. (orig.)

  7. Plasmonics Meets Biology through Optics

    Directory of Open Access Journals (Sweden)

    Luciano De Sio

    2015-06-01

    Full Text Available Plasmonic metallic nanoparticles (NPs represent a relevant class of nanomaterials, which is able to achieve light localization down to nanoscale by exploiting a phenomenon called Localized Plasmon Resonance. In the last few years, NPs have been proposed to trigger DNA release or enhance ablation of diseased tissues, while minimizing damage to healthy tissues. In view of the therapeutic relevance of such plasmonic NPs; a detailed characterization of the electrostatic interaction between positively charged gold nanorods (GNRs and a negatively charged whole-genome DNA solution is reported. The preparation of the hybrid biosystem has been investigated as a function of DNA concentration by means of ζ-potential; hydrodynamic diameter and gel electrophoresis analysis. The results have pointed out the specific conditions to achieve the most promising GNRs/DNA complex and its photo-thermal properties have been investigated. The overall study allows to envisage the possibility to ingeniously combine plasmonic and biological materials and, thus, enable design and development of an original non invasive all-optical methodology for monitoring photo-induced temperature variation with high sensitivity.

  8. Imaging investigations of optic gliomas

    International Nuclear Information System (INIS)

    Objective: To evaluate CT and MR imaging findings of optic gliomas and their clinical significance. Methods: CT and MR imaging findings of 20 patients with pathologically confirmed optic gliomas were analyzed retrospectively. The age of the patients ranged from 8 months to 69 years. Ten patients were female and ten were male. CT scanning was performed in 10 patients with contrast scanning in 2, and MR imaging was performed in 19 patients with contrast scanning in 14. Results: Of the 20 cases with optic gliomas, a fusiform thickening of the optic nerve was found on CT and/or MR imaging in 12, a tubular enlarging and kinking of the optic nerve in 5, a dumb-bell mass of the optic nerve in 2, and an ovoid mass in 1. Enlargement of intraorbital and intracanalicular segments of the optic nerve was seen in all 20 cases, simultaneous enlargement of intracranial segment in 15, a simultaneous mass of intraocular segment in 4, a simultaneous mass of optic chiasm in 6, and simultaneous enlargement of optic tract in 2. CT scanning performed in 10 patients showed iso-density mass. Enhancement of enlarged optic nerve was observed on postcontrast CT in two. MR imaging performed in 19 patients displayed a long T1 and long T2 signal intensity mass in 12, a long T1 and identical T2 signal intensity mass in 5, and an isointense mass on T1- and T2- weighted images in 2. After contrast administration in 14 cases, marked enhancement of the mass was seen in 12 cases, and moderate enhancement was demonstrated in 2. Of the 7 patients associated with neurofibromatosis I, four optic gliomas appeared as a specific sign-isointense in the center on both T1- and T2-weighted images , hypointense on T1- and T2-weighted images in the intermediate portion, and long T1 and long T2 signal intensity in peripheral portion. After statistical analysis, MR imaging was superior to CT in demonstrating the tumor involvement of the intracanalicular and intracranial segments of the optic nerve (P<0

  9. Optical physics enables advances in multiphoton imaging

    International Nuclear Information System (INIS)

    Since the initial images were taken using a multiphoton imaging technique the method has rapidly established itself as the preferred method for imaging deeply into biological samples with micron resolution in three dimensions. Multiphoton imaging has thus enabled researchers in the life sciences to undertake studies that had previously been believed to be impossible without significantly perturbing the sample. Many of these experiments have only been realized due to close cooperation between optical physicists, from a range of disciplines, and the biomedical researchers. This paper will provide a general review of the current state of the field demonstrating how the various aspects of the physics development have brought the multiphoton technique to its current position at the forefront of biological microscopy. (topical review)

  10. Multiplane 3D superresolution optical fluctuation imaging

    CERN Document Server

    Geissbuehler, Stefan; Godinat, Aurélien; Bocchio, Noelia L; Dubikovskaya, Elena A; Lasser, Theo; Leutenegger, Marcel

    2013-01-01

    By switching fluorophores on and off in either a deterministic or a stochastic manner, superresolution microscopy has enabled the imaging of biological structures at resolutions well beyond the diffraction limit. Superresolution optical fluctuation imaging (SOFI) provides an elegant way of overcoming the diffraction limit in all three spatial dimensions by computing higher-order cumulants of image sequences of blinking fluorophores acquired with a conventional widefield microscope. So far, three-dimensional (3D) SOFI has only been demonstrated by sequential imaging of multiple depth positions. Here we introduce a versatile imaging scheme which allows for the simultaneous acquisition of multiple focal planes. Using 3D cross-cumulants, we show that the depth sampling can be increased. Consequently, the simultaneous acquisition of multiple focal planes reduces the acquisition time and hence the photo-bleaching of fluorescent markers. We demonstrate multiplane 3D SOFI by imaging the mitochondria network in fixed ...

  11. Optical and digital image processing

    CERN Document Server

    Cristobal, Gabriel; Thienpont, Hugo

    2011-01-01

    In recent years, Moore's law has fostered the steady growth of the field of digital image processing, though the computational complexity remains a problem for most of the digital image processing applications. In parallel, the research domain of optical image processing has matured, potentially bypassing the problems digital approaches were suffering and bringing new applications. The advancement of technology calls for applications and knowledge at the intersection of both areas but there is a clear knowledge gap between the digital signal processing and the optical processing communities. T

  12. Semiconductor Nanocrystals for Biological Imaging

    Energy Technology Data Exchange (ETDEWEB)

    Fu, Aihua; Gu, Weiwei; Larabell, Carolyn; Alivisatos, A. Paul

    2005-06-28

    Conventional organic fluorophores suffer from poor photo stability, narrow absorption spectra and broad emission feature. Semiconductor nanocrystals, on the other hand, are highly photo-stable with broad absorption spectra and narrow size-tunable emission spectra. Recent advances in the synthesis of these materials have resulted in bright, sensitive, extremely photo-stable and biocompatible semiconductor fluorophores. Commercial availability facilitates their application in a variety of unprecedented biological experiments, including multiplexed cellular imaging, long-term in vitro and in vivo labeling, deep tissue structure mapping and single particle investigation of dynamic cellular processes. Semiconductor nanocrystals are one of the first examples of nanotechnology enabling a new class of biomedical applications.

  13. Micro-optics for imaging.

    Energy Technology Data Exchange (ETDEWEB)

    Boye, Robert R.

    2010-09-01

    This project investigates the fundamental imaging capability of an optic with a physical thickness substantially less than 1 mm. The analysis assumes that post-processing can overcome certain restrictions such as detector pixel size and image degradation due to aberrations. A first order optical analysis quickly reveals the limitations of even an ideal thin lens to provide sufficient image resolution and provides the justification for pursuing an annular design. Some straightforward examples clearly show the potential of this approach. The tradeoffs associated with annular designs, specifically field of view limitations and reduced mid-level spatial frequencies, are discussed and their impact on the imaging performance evaluated using several imaging examples. Additionally, issues such as detector acceptance angle and the need to balance aberrations with resolution are included in the analysis. With these restrictions, the final results present an excellent approximation of the expected performance of the lens designs presented.

  14. Transfection and imaging of diamond nanocrystals as scattering optical labels

    International Nuclear Information System (INIS)

    We report on the first demonstration of nanodiamond (ND) as a scattering optical label in a biological environment. NDs were efficiently transfected into cells using cationic liposomes, and imaged using differential interference and Hoffman modulation 'space' contrast microscopy techniques. We have shown that 55 nm NDs are biologically inert and produce a bright signal compared to the cell background. ND as a scattering label presents the possibility for extended biological imaging with relatively little thermal or biochemical perturbations due to the optical transparency and biologically inert nature of diamond

  15. Fluorescence confocal endomicroscopy in biological imaging

    Science.gov (United States)

    Delaney, Peter; Thomas, Steven; Allen, John; McLaren, Wendy; Murr, Elise; Harris, Martin

    2007-02-01

    In vivo fluorescence microscopic imaging of biological systems in human disease states and animal models is possible with high optical resolution and mega pixel point-scanning performance using optimised off-the-shelf turn-key devices. There are however various trade-offs between tissue access and instrument performance when miniaturising in vivo microscopy systems. A miniature confocal scanning technology that was developed for clinical human endoscopy has been configured into a portable device for direct hand-held interrogation of living tissue in whole animal models (Optiscan FIVE-1 system). Scanning probes of 6.3mm diameter with a distal tip diameter of 5.0mm were constructed either in a 150mm length for accessible tissue, or a 300mm probe for laparoscopic interrogation of internal tissues in larger animal models. Both devices collect fluorescence confocal images (excitation 488 nm; emission >505 or >550 nm) comprised of 1024 x 1204 sampling points/image frame, with lateral resolution 0.7um; axial resolution 7um; FOV 475 x 475um. The operator can dynamically control imaging depth from the tissue surface to approx 250um in 4um steps via an internally integrated zaxis actuator. Further miniaturisation is achieved using an imaging contact probe based on scanning the proximal end of a high-density optical fibre bundle (~30,000 fibres) of organs, albeit at lower resolution (30,000 sampling points/image). In rodent models, imaging was performed using various fluorescent staining protocols including fluorescently labelled receptor ligands, labelled antibodies, FITC-dextrans, vital dyes and labelled cells administered topically or intravenously. Abdominal organs of large animals were accessed laparoscopically and contrasted using i.v. fluorescein-sodium. Articular cartilage of sheep and pigs was fluorescently stained with calcein-AM or fluorescein. Surface and sub-surface cellular and sub-cellular details could be readily visualised in vivo at high resolution. In

  16. Sensorless adaptive optics and the effect of field of view in biological second harmonic generation microscopy

    Science.gov (United States)

    Vandendriessche, Stefaan; Vanbel, Maarten K.; Verbiest, Thierry

    2014-05-01

    In light of the population aging in many developed countries, there is a great economical interest in improving the speed and cost-efficiency of healthcare. Clinical diagnosis tools are key to these improvements, with biophotonics providing a means to achieve them. Standard optical microscopy of in vitro biological samples has been an important diagnosis tool since the invention of the microscope, with well known resolution limits. Nonlinear optical imaging improves on the resolution limits of linear microscopy, while providing higher contrast images and a greater penetration depth due to the red-shifted incident light compared to standard optical microscopy. It also provides information on molecular orientation and chirality. Adaptive optics can improve the quality of nonlinear optical images. We analyzed the effect of sensorless adaptive optics on the quality of the nonlinear optical images of biological samples. We demonstrate that care needs to be taken when using a large field of view. Our findings provide information on how to improve the quality of nonlinear optical imaging, and can be generalized to other in vitro biological samples. The image quality improvements achieved by adaptive optics should help speed up clinical diagnostics in vitro, while increasing their accuracy and helping decrease detection limits. The same principles apply to in vivo biological samples, and in the future it may be possible to extend these findings to other nonlinear optical effects used in biological imaging.

  17. Bioferroelectricity and optical properties of biological systems

    Science.gov (United States)

    Bystrov, Vladimir; Bystrova, Natalia

    2003-08-01

    A bioferroelectric approach to analysis of ferroelectric behavior of biological systems is presented. The optical properties of nerve fibers, biomembrane ion channels, and purple membrane films containing bacteriorhodopsin are analyzed. The features, influence of the proton subsystem and proton transfer on the hydrogen-bonded biomolecular structures are analyzed within the ferroelectric liquid-crystal model and possible biomedical applications discussed. The ferroelectric behavior of biological systems and the set of various bioferroelectric effects are considered within the limits of phenomenological theory of ferroelectrics. The nonlinear response to weak actions under conditions critical to human organism is one of specific features characterizing biological objects on molecular, cell and organism levels.

  18. Plasmonic optical trapping in biologically relevant media.

    Directory of Open Access Journals (Sweden)

    Brian J Roxworthy

    Full Text Available We present plasmonic optical trapping of micron-sized particles in biologically relevant buffer media with varying ionic strength. The media consist of 3 cell-growth solutions and 2 buffers and are specifically chosen due to their widespread use and applicability to breast-cancer and angiogenesis studies. High-precision rheological measurements on the buffer media reveal that, in all cases excluding the 8.0 pH Stain medium, the fluids exhibit Newtonian behavior, thereby enabling straightforward measurements of optical trap stiffness from power-spectral particle displacement data. Using stiffness as a trapping performance metric, we find that for all media under consideration the plasmonic nanotweezers generate optical forces 3-4x a conventional optical trap. Further, plasmonic trap stiffness values are comparable to those of an identical water-only system, indicating that the performance of a plasmonic nanotweezer is not degraded by the biological media. These results pave the way for future biological applications utilizing plasmonic optical traps.

  19. Optical fibre cantilever sensor for biological application

    Science.gov (United States)

    Li, J.; Zhou, Y. X.; Patterson, G.; Shu, W. M.; Maier, R. R. J.; Fowler, R.; Hand, D. P.; MacPherson, W. N.

    2014-05-01

    Micro-cantilever sensors have shown great promise in a wide range of application are as including chemical and biological sensing. However, many of these devices are based upon a sensor `chip' that requires careful alignment between the cantilever and the read-out system, which can be challenging. Furthermore, optical interrogation typically involves a bulky free-space system. Optical fibre addressed cantilevers have been reported previously in the literature and in this paper we propose techniques to design and fabricate polymer micro-cantilevers for attachment onto the end of standard single mode fibres using laser machining. Low-cost optical sources and a fibre coupled spectrometer are employed to monitor the cantilever deflection and therefore observe biological binding between a species of interest and an activated cantilever. Proof-of-concept experiments show that the sensor is capable of detecting pathogen concentration with down to a level of 105cfu/ml.

  20. Luminescent probes for optical in vivo imaging

    Science.gov (United States)

    Texier, Isabelle; Josserand, Veronique; Garanger, Elisabeth; Razkin, Jesus; Jin, Zhaohui; Dumy, Pascal; Favrot, Marie; Boturyn, Didier; Coll, Jean-Luc

    2005-04-01

    Going along with instrumental development for small animal fluorescence in vivo imaging, we are developing molecular fluorescent probes, especially for tumor targeting. Several criteria have to be taken into account for the optimization of the luminescent label. It should be adapted to the in vivo imaging optical conditions : red-shifted absorption and emission, limited overlap between absorption and emission for a good signal filtering, optimized luminescence quantum yield, limited photo-bleaching. Moreover, the whole probe should fulfill the biological requirements for in vivo labeling : adapted blood-time circulation, biological conditions compatibility, low toxicity. We here demonstrate the ability of the imaging fluorescence set-up developed in LETI to image the bio-distribution of molecular probes on short times after injection. Targeting with Cy5 labeled holo-transferrin of subcutaneous TS/Apc (angiogenic murine breast carcinoma model) or IGROV1 (human ovarian cancer) tumors was achieved. Differences in the kinetics of the protein uptake by the tumors were evidenced. IGROV1 internal metastatic nodes implanted in the peritoneal cavity could be detected in nude mice. However, targeted metastatic nodes in lung cancer could only be imaged after dissection of the mouse. These results validate our fluorescence imaging set-up and the use of Cy5 as a luminescent label. New fluorescent probes based on this dye and a molecular delivery template (the RAFT molecule) can thus be envisioned.

  1. Optical coherence tomography: technology and applications (biological and medical physics, biomedical engineering)

    CERN Document Server

    2013-01-01

    Optical coherence tomography (OCT) is the optical analog of ultrasound imaging and is emerging as a powerful imaging technique that enables non-invasive, in vivo, high resolution, cross-sectional imaging in biological tissue. This book introduces OCT technology and applications not only from an optical and technological viewpoint, but also from biomedical and clinical perspectives. The chapters are written by leading research groups, in a style comprehensible to a broad audience.

  2. Photoacoustic tomography imaging of biological tissues

    Science.gov (United States)

    Su, Yixiong; Wang, Ruikang K.; Xu, Kexin; Zhang, Fan; Yao, Jianquan

    2005-01-01

    Non-invasive laser-induced photoacoustic tomography is attracting more and more attentions in the biomedical optical imaging field. This imaging modality takes the advantages in that the tomography image has the optical contrast similar to the optical techniques while enjoying the high spatial resolution comparable to the ultrasound. Currently, its biomedical applications are mainly focused on breast cancer diagnosis and small animal imaging. In this paper, we report in detail a photoacoustic tomography experiment system constructed in our laboratory. In our system, a Q-switched ND:YAG pulse laser operated at 532nm with a 10ns pulse width is employed to generate photoacoustic signal. A tissue-mimicking phantom was built to test the system. When imaged, the phantom and detectors were immersed in a water tank to facilitate the acoustic detection. Based on filtered back-projection process of photoacoustic imaging, the two-dimension distribution of optical absorption in tissue phantom was reconstructed.

  3. Optical Waveguide Sensing and Imaging

    CERN Document Server

    Bock, Wojtek J; Tanev, Stoyan

    2008-01-01

    The book explores various aspects of existing and emerging fiber and waveguide optics sensing and imaging technologies including recent advances in nanobiophotonics. The focus is both on fundamental and applied research as well as on applications in civil engineering, biomedical sciences, environment, security and defence. The main goal of the multi-disciplinarry team of Editors was to provide an useful reference of state-of-the-art overviews covering a variety of complementary topics on the interface of engineering and biomedical sciences.

  4. Optically detected magnetic resonance imaging

    International Nuclear Information System (INIS)

    Optically detected magnetic resonance provides ultrasensitive means to detect and image a small number of electron and nuclear spins, down to the single spin level with nanoscale resolution. Despite the significant recent progress in this field, it has never been combined with the power of pulsed magnetic resonance imaging techniques. Here, we demonstrate how these two methodologies can be integrated using short pulsed magnetic field gradients to spatially encode the sample. This result in what we denote as an 'optically detected magnetic resonance imaging' technique. It offers the advantage that the image is acquired in parallel from all parts of the sample, with well-defined three-dimensional point-spread function, and without any loss of spectroscopic information. In addition, this approach may be used in the future for parallel but yet spatially selective efficient addressing and manipulation of the spins in the sample. Such capabilities are of fundamental importance in the field of quantum spin-based devices and sensors

  5. Visualization of the Biological Behavior of Tumor-Associated Macrophages in Living Mice with Colon Cancer Using Multimodal Optical Reporter Gene Imaging

    Directory of Open Access Journals (Sweden)

    Yun Ju Choi

    2016-03-01

    Full Text Available We sought to visualize the migration of tumor-associated macrophages (TAMs to tumor lesions and to evaluate the effects of anti-inflammatory drugs on TAM-modulated tumor progression in mice with colon cancer using a multimodal optical reporter gene system. Murine macrophage Raw264.7 cells expressing an enhanced firefly luciferase (Raw/effluc and murine colon cancer CT26 cells coexpressing Rluc and mCherry (CT26/Rluc-mCherry, CT26/RM were established. CT26/RM tumor-bearing mice received Raw/effluc via their tail veins, and combination of bioluminescence imaging (BLI and fluorescence imaging (FLI was conducted for in vivo imaging of TAMs migration and tumor progression. Dexamethasone (DEX, a potent anti-inflammatory drug, was administered intraperitoneally to tumor-bearing mice following the intravenous transfer of Raw/effluc cells. The migration of TAMs and tumor growth was monitored by serial FLI and BLI. The migration of Raw/effluc cells to tumor lesions was observed at day 1, and BLI signals were still distinct at tumor lesions on day 4. Localization of BLI signals from migrated Raw/effluc cells corresponded to that of FLI signals from CT26/RM tumors. In vivo FLI of tumors demonstrated enhanced tumor growth associated with macrophage migration to tumor lesions. Treatment with DEX inhibited the influx of Raw/effluc cells to tumor lesions and abolished the enhanced tumor growth associated with macrophage migration. These findings suggest that molecular imaging approach for TAM tracking is a valuable tool for evaluating the role of TAMs in the tumor microenvironment as well as for the development of new drugs to control TAM involvement in the modulation of tumor progression.

  6. Nonlinear Interferometric Vibrational Imaging (NIVI) with Novel Optical Sources

    Science.gov (United States)

    Boppart, Stephen A.; King, Matthew D.; Liu, Yuan; Tu, Haohua; Gruebele, Martin

    Optical imaging is essential in medicine and in fundamental studies of biological systems. Although many existing imaging modalities can supply valuable information, not all are capable of label-free imaging with high-contrast and molecular specificity. The application of molecular or nanoparticle contrast agents may adversely influence the biological system under investigation. These substances also present ongoing concerns over toxicity or particle clearance, which must be properly addressed before their approval for in vivo human imaging. Hence there is an increasing appreciation for label-free imaging techniques. It is of primary importance to develop imaging techniques that can indiscriminately identify and quantify biochemical compositions to high degrees of sensitivity and specificity through only the intrinsic optical response of endogenous molecular species. The development and use of nonlinear interferometric vibrational imaging, which is based on the interferometric detection of optical signals from coherent anti-Stokes Raman scattering (CARS), along with novel optical sources, offers the potential for label-free molecular imaging.

  7. A Biologically Inspired CMOS Image Sensor

    CERN Document Server

    Sarkar, Mukul

    2013-01-01

    Biological systems are a source of inspiration in the development of small autonomous sensor nodes. The two major types of optical vision systems found in nature are the single aperture human eye and the compound eye of insects. The latter are among the most compact and smallest vision sensors. The eye is a compound of individual lenses with their own photoreceptor arrays.  The visual system of insects allows them to fly with a limited intelligence and brain processing power. A CMOS image sensor replicating the perception of vision in insects is discussed and designed in this book for industrial (machine vision) and medical applications. The CMOS metal layer is used to create an embedded micro-polarizer able to sense polarization information. This polarization information is shown to be useful in applications like real time material classification and autonomous agent navigation. Further the sensor is equipped with in pixel analog and digital memories which allow variation of the dynamic range and in-pixel b...

  8. Integrated structural and functional optical imaging combining spectral-domain optical coherence and multiphoton microscopy

    CERN Document Server

    Vinegoni, C; Luo, W; Marks, D L; Ralston, T; Tan, W

    2005-01-01

    An integrated microscope that combines different optical techniques for simultaneous imaging is demonstrated. The microscope enables spectral-domain optical coherence microscopy based on optical backscatter, and multi-photon microscopy for the detection of two-photon fluorescence and second harmonic generation signals. The unique configuration of this integrated microscope allows for the simultaneous acquisition of both anatomical (structural) and functional imaging information with particular emphasis for applications in the fields of tissue engineering and cell biology. In addition, the contemporary analysis of the spectroscopic features can enhance contrast by differentiating among different tissue components.

  9. A fibered interference scanning optical microscope for living cell imaging

    CERN Document Server

    Jean-Baptiste~Decombe,; Villard, Catherine; Guillou, Hervé; Chevrier, Joël; Huant, Serge; Fick, Jochen

    2010-01-01

    We report on the 3-dimensional imaging of biological cells including living neurons by a recently developed fibered interferometric Scanning Optical Microscope. The topography and surface structure of mouse fibroblasts and hippocampal neurons are clearly revealed. This straightforward technique allows fast, high resolution observation of samples in liquids without lengthy alignment procedures or costly components.

  10. Coherence-Gated Sensorless Adaptive Optics Multiphoton Retinal Imaging.

    Science.gov (United States)

    Cua, Michelle; Wahl, Daniel J; Zhao, Yuan; Lee, Sujin; Bonora, Stefano; Zawadzki, Robert J; Jian, Yifan; Sarunic, Marinko V

    2016-09-07

    Multiphoton microscopy enables imaging deep into scattering tissues. The efficient generation of non-linear optical effects is related to both the pulse duration (typically on the order of femtoseconds) and the size of the focused spot. Aberrations introduced by refractive index inhomogeneity in the sample distort the wavefront and enlarge the focal spot, which reduces the multiphoton signal. Traditional approaches to adaptive optics wavefront correction are not effective in thick or multi-layered scattering media. In this report, we present sensorless adaptive optics (SAO) using low-coherence interferometric detection of the excitation light for depth-resolved aberration correction of two-photon excited fluorescence (TPEF) in biological tissue. We demonstrate coherence-gated SAO TPEF using a transmissive multi-actuator adaptive lens for in vivo imaging in a mouse retina. This configuration has significant potential for reducing the laser power required for adaptive optics multiphoton imaging, and for facilitating integration with existing systems.

  11. Coherence-Gated Sensorless Adaptive Optics Multiphoton Retinal Imaging

    Science.gov (United States)

    Cua, Michelle; Wahl, Daniel J.; Zhao, Yuan; Lee, Sujin; Bonora, Stefano; Zawadzki, Robert J.; Jian, Yifan; Sarunic, Marinko V.

    2016-01-01

    Multiphoton microscopy enables imaging deep into scattering tissues. The efficient generation of non-linear optical effects is related to both the pulse duration (typically on the order of femtoseconds) and the size of the focused spot. Aberrations introduced by refractive index inhomogeneity in the sample distort the wavefront and enlarge the focal spot, which reduces the multiphoton signal. Traditional approaches to adaptive optics wavefront correction are not effective in thick or multi-layered scattering media. In this report, we present sensorless adaptive optics (SAO) using low-coherence interferometric detection of the excitation light for depth-resolved aberration correction of two-photon excited fluorescence (TPEF) in biological tissue. We demonstrate coherence-gated SAO TPEF using a transmissive multi-actuator adaptive lens for in vivo imaging in a mouse retina. This configuration has significant potential for reducing the laser power required for adaptive optics multiphoton imaging, and for facilitating integration with existing systems. PMID:27599635

  12. Coherence-Gated Sensorless Adaptive Optics Multiphoton Retinal Imaging.

    Science.gov (United States)

    Cua, Michelle; Wahl, Daniel J; Zhao, Yuan; Lee, Sujin; Bonora, Stefano; Zawadzki, Robert J; Jian, Yifan; Sarunic, Marinko V

    2016-01-01

    Multiphoton microscopy enables imaging deep into scattering tissues. The efficient generation of non-linear optical effects is related to both the pulse duration (typically on the order of femtoseconds) and the size of the focused spot. Aberrations introduced by refractive index inhomogeneity in the sample distort the wavefront and enlarge the focal spot, which reduces the multiphoton signal. Traditional approaches to adaptive optics wavefront correction are not effective in thick or multi-layered scattering media. In this report, we present sensorless adaptive optics (SAO) using low-coherence interferometric detection of the excitation light for depth-resolved aberration correction of two-photon excited fluorescence (TPEF) in biological tissue. We demonstrate coherence-gated SAO TPEF using a transmissive multi-actuator adaptive lens for in vivo imaging in a mouse retina. This configuration has significant potential for reducing the laser power required for adaptive optics multiphoton imaging, and for facilitating integration with existing systems. PMID:27599635

  13. Imaging granulomatous lesions with optical coherence tomography

    DEFF Research Database (Denmark)

    Banzhaf, Christina; Jemec, Gregor B E

    2012-01-01

    To investigate and compare the presentation of granulomatous lesions in optical coherence tomography (OCT) images and compare this to previous studies of nonmelanoma skin tumors.......To investigate and compare the presentation of granulomatous lesions in optical coherence tomography (OCT) images and compare this to previous studies of nonmelanoma skin tumors....

  14. Testing of electro-optical imaging systems

    Science.gov (United States)

    Chrzanowski, Krzysztof; Barela, Jaroslaw; Firmanty, Krzysztof

    2004-08-01

    Humans cannot objectively judge electro-optical imaging systems looking on an image of typical scenery. Quality of the image can be bad for some people but good for others and therefore objective test methods and advanced equipment are needed to evaluate these imaging systems. Test methods and measuring systems that enable reliable testing and evaluation of modern thermal cameras, color and monochrome TV cameras, LLLTV cameras and image intensifier systems are presented in this paper.

  15. Imaging cellular and molecular biological functions

    Energy Technology Data Exchange (ETDEWEB)

    Shorte, S.L. [Institut Pasteur, 75 - Paris (France). Plateforme d' Imagerie Dynamique PFID-Imagopole; Frischknecht, F. (eds.) [Heidelberg Univ. Medical School (Germany). Dept. of Parasitology

    2007-07-01

    'Imaging cellular and molecular biological function' provides a unique selection of essays by leading experts, aiming at scientist and student alike who are interested in all aspects of modern imaging, from its application and up-scaling to its development. Indeed the philosophy of this volume is to provide student, researcher, PI, professional or provost the means to enter this applications field with confidence, and to construct the means to answer their own specific questions. (orig.)

  16. microlith : Image Simulation for Biological Phase Microscopy

    CERN Document Server

    Mehta, Shalin B

    2013-01-01

    Accurate simulation of image formation remains under-exploited for biological phase microscopy methods that employ partially coherent illumination, despite being important for the design of imaging systems and the reconstruction algorithms. We present an open-source MATLAB toolbox, microlith (https://code.google.com/p/microlith), that provides accurate simulation of the 3D image of a thin specimen under any partially coherent imaging system, including coherent or incoherent systems. We demonstrate the accuracy of the microlith toolbox by comparing simulated images and experimental images of a phase-only Siemens star test target using dark field and differential interference contrast microscopes. The comparison leads to intriguing insights about the sensitivity of the dark-field microscope to sub-resolution features and effects of specimen birefringence on differential interference contrast.

  17. Optical design for LED dental lighting with imaging optic technique

    Science.gov (United States)

    Kwon, Young-Hoon; Bae, Seung-Chul; Lim, Hae-Ryong; Jang, Ja-Soon

    2011-10-01

    We did a research as follows. First of all, selected optimum LEDs and mixed it for higher CRI, target CCT and illuminance. The following step is optical module design. Light directional characteristics of dental lighting must be concentrated to illuminate a part. Because This part is oral cavity, The feature of illumination pattern is rectangular. For uniformity of illuminance and clearer pattern boundary at reference distance, we designed it as direct type (no use reflector) by imaging optic technique. First, Image is rectangular feature, so object must be the same feature with magnification in general imaging optics. But the emitting surface feature of LED (1W grade) is square or circular generally. For that reason, made object as rectangular source with rectangular lightguide. This optical component was designed for higher efficiency by illumination optic technique. Next, we designed optical lenses based on imaging optic technique for image object feature using Code V. set to high NA for light efficiency in this design. Fundamentally, Finally, This product is luminaire so illumination simulation and result analysis were executed by LightTools as illumination design software.

  18. Image correction in magneto-optical microscopy

    DEFF Research Database (Denmark)

    Paturi, P.; Larsen, B.H.; Jacobsen, B.A.;

    2003-01-01

    An image-processing procedure that assures correct determination of the magnetic field distribution of magneto-optical images is presented. The method remedies image faults resulting from sources that are proportional to the incident light intensity, such as different types of defects in the indi...

  19. Optics for Advanced Neutron Imaging and Scattering

    Energy Technology Data Exchange (ETDEWEB)

    Moncton, David E. [Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States); Khaykovich, Boris [Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States)

    2016-03-30

    During the report period, we continued the work as outlined in the original proposal. We have analyzed potential optical designs of Wolter mirrors for the neutron-imaging instrument VENUS, which is under construction at SNS. In parallel, we have conducted the initial polarized imaging experiment at Helmholtz Zentrum, Berlin, one of very few of currently available polarized-imaging facilities worldwide.

  20. NAOMI: nanoparticle-assisted optical molecular imaging

    Science.gov (United States)

    Faber, Dirk J.; de Bruin, Martijn; Aalders, Maurice C. G.; Verbraak, Frank D.; van Leeuwen, Ton G.

    2007-02-01

    We present our first steps towards nanoparticle assisted, optical molecular imaging (NAOMI) using biodegradable nanoparticles. Our focus is on using optical coherence tomography(OCT) as the imaging modality. We propose to use nanoparticles based on biodegradable polymers, loaded with carefully selected dyes as contrast agent, and outline a method for establishing their desired optical properties prior to synthesis. Moreover, we perform a qualitative pilot study using these biodegradable nanoparticles, measuring their optical properties which are found to be in line with theoretical predictions.

  1. Optical Fourier techniques for medical image processing and phase contrast imaging.

    Science.gov (United States)

    Yelleswarapu, Chandra S; Kothapalli, Sri-Rajasekhar; Rao, D V G L N

    2008-04-01

    This paper briefly reviews the basics of optical Fourier techniques (OFT) and applications for medical image processing as well as phase contrast imaging of live biological specimens. Enhancement of microcalcifications in a mammogram for early diagnosis of breast cancer is the main focus. Various spatial filtering techniques such as conventional 4f filtering using a spatial mask, photoinduced polarization rotation in photosensitive materials, Fourier holography, and nonlinear transmission characteristics of optical materials are discussed for processing mammograms. We also reviewed how the intensity dependent refractive index can be exploited as a phase filter for phase contrast imaging with a coherent source. This novel approach represents a significant advance in phase contrast microscopy.

  2. Radio-Optical Imaging of ATLBS Survey

    Indian Academy of Sciences (India)

    Kshitij Thorat

    2011-12-01

    We present the radio-optical imaging of ATLBS, a sensitive radio survey (Subrahmanyan et al. 2010). The primary aim of the ATLBS survey is to image low-power radio sources which form the bulk of the radio source population to moderately high red-shifts ( ∼ 1.0). The accompanying multiband optical and near infra-red observations provide information about the hosts and environments of the radio sources. We give here details of the imaging of the radio data and optical data for the ATLBS survey.

  3. Nonlinear spectral imaging of biological tissues

    NARCIS (Netherlands)

    Palero, J.A.

    2007-01-01

    The work presented in this thesis demonstrates live high resolution 3D imaging of tissue in its native state and environment. The nonlinear interaction between focussed femtosecond light pulses and the biological tissue results in the emission of natural autofluorescence and second-harmonic signal.

  4. Optical Imaging Sensors and Systems for Homeland Security Applications

    CERN Document Server

    Javidi, Bahram

    2006-01-01

    Optical and photonic systems and devices have significant potential for homeland security. Optical Imaging Sensors and Systems for Homeland Security Applications presents original and significant technical contributions from leaders of industry, government, and academia in the field of optical and photonic sensors, systems and devices for detection, identification, prevention, sensing, security, verification and anti-counterfeiting. The chapters have recent and technically significant results, ample illustrations, figures, and key references. This book is intended for engineers and scientists in the relevant fields, graduate students, industry managers, university professors, government managers, and policy makers. Advanced Sciences and Technologies for Security Applications focuses on research monographs in the areas of -Recognition and identification (including optical imaging, biometrics, authentication, verification, and smart surveillance systems) -Biological and chemical threat detection (including bios...

  5. Adaptive optics optical coherence tomography for retina imaging

    Institute of Scientific and Technical Information of China (English)

    Guohua Shi; Yun Dai; Ling Wang; Zhihua Ding; Xuejun Rao; Yudong Zhang

    2008-01-01

    When optical coherence tomography (OCT) is used for human retina imaging, its transverse resolution is limited by the aberrations of human eyes. To overcome this disadvantage, a high resolution imaging system for living human retina, which consists of a time domain OCT system and a 37-elements adaptive optics (AO) system, has been developed. The AO closed loop rate is 20 frames per second, and the OCT has a 6.7-μm axial resolution. In this paper, this system is introduced and the high resolution imaging results for retina are presented.

  6. Quantitative biological imaging by ptychographic X-ray diffraction microscopy

    Energy Technology Data Exchange (ETDEWEB)

    Giewekemeyer, Klaus; Kalbfleisch, Sebastian; Beerlink, Andre; Salditt, Tim [Institut fuer Roentgenphysik, Georg-August-Universitaet Goettingen (Germany); Thibault, Pierre; Dierolf, Martin; Pfeiffer, Franz [Department Physik (E17), Technische Universitaet Muenchen, Garching (Germany); Kewish, Cameron M. [Paul Scherrer Institut, Villigen PSI (Switzerland)

    2010-07-01

    Mesoscopic structures with specific functions are abundant in many cellular systems and have been well characterized by electron microscopy in the past. However, the quantitative study of the three-dimensional structure and density of subcellular components remains a difficult problem. In this contribution we show how these limitations could be overcome in the future by the application of recently introduced and now rapidly evolving coherent X-ray imaging techniques for quantitative biological imaging on the nanoscale. More specifically, we report on a recent scanning (ptychographic) diffraction experiment on unstained and unsliced freeze-dried cells of the bacterium Deinococcus radiourans using only a pinhole as beam defining optical element. As a result quantitative density projections well below optical resolution have been achieved.

  7. Space-based optical image encryption.

    Science.gov (United States)

    Chen, Wen; Chen, Xudong

    2010-12-20

    In this paper, we propose a new method based on a three-dimensional (3D) space-based strategy for the optical image encryption. The two-dimensional (2D) processing of a plaintext in the conventional optical encryption methods is extended to a 3D space-based processing. Each pixel of the plaintext is considered as one particle in the proposed space-based optical image encryption, and the diffraction of all particles forms an object wave in the phase-shifting digital holography. The effectiveness and advantages of the proposed method are demonstrated by numerical results. The proposed method can provide a new optical encryption strategy instead of the conventional 2D processing, and may open up a new research perspective for the optical image encryption.

  8. Magnetic resonance imaging of optic nerve

    Directory of Open Access Journals (Sweden)

    Foram Gala

    2015-01-01

    Full Text Available Optic nerves are the second pair of cranial nerves and are unique as they represent an extension of the central nervous system. Apart from clinical and ophthalmoscopic evaluation, imaging, especially magnetic resonance imaging (MRI, plays an important role in the complete evaluation of optic nerve and the entire visual pathway. In this pictorial essay, the authors describe segmental anatomy of the optic nerve and review the imaging findings of various conditions affecting the optic nerves. MRI allows excellent depiction of the intricate anatomy of optic nerves due to its excellent soft tissue contrast without exposure to ionizing radiation, better delineation of the entire visual pathway, and accurate evaluation of associated intracranial pathologies.

  9. Gated frequency-resolved optical imaging with an optical parametric amplifier for medical applications

    Energy Technology Data Exchange (ETDEWEB)

    Cameron, S.M.; Bliss, D.E.

    1997-02-01

    Implementation of optical imagery in a diffuse inhomogeneous medium such as biological tissue requires an understanding of photon migration and multiple scattering processes which act to randomize pathlength and degrade image quality. The nature of transmitted light from soft tissue ranges from the quasi-coherent properties of the minimally scattered component to the random incoherent light of the diffuse component. Recent experimental approaches have emphasized dynamic path-sensitive imaging measurements with either ultrashort laser pulses (ballistic photons) or amplitude modulated laser light launched into tissue (photon density waves) to increase image resolution and transmissive penetration depth. Ballistic imaging seeks to compensate for these {open_quotes}fog-like{close_quotes} effects by temporally isolating the weak early-arriving image-bearing component from the diffusely scattered background using a subpicosecond optical gate superimposed on the transmitted photon time-of-flight distribution. The authors have developed a broadly wavelength tunable (470 nm -2.4 {mu}m), ultrashort amplifying optical gate for transillumination spectral imaging based on optical parametric amplification in a nonlinear crystal. The time-gated image amplification process exhibits low noise and high sensitivity, with gains greater than 104 achievable for low light levels. We report preliminary benchmark experiments in which this system was used to reconstruct, spectrally upcovert, and enhance near-infrared two-dimensional images with feature sizes of 65 {mu}m/mm{sup 2} in background optical attenuations exceeding 10{sup 12}. Phase images of test objects exhibiting both absorptive contrast and diffuse scatter were acquired using a self-referencing Shack-Hartmann wavefront sensor in combination with short-pulse quasi-ballistic gating. The sensor employed a lenslet array based on binary optics technology and was sensitive to optical path distortions approaching {lambda}/100.

  10. Infrared spectroscopic imaging microscopy: Applications to biological systems

    International Nuclear Information System (INIS)

    The coupling of imaging modalities with spectroscopic techniques adds additional dimensions to sample analysis in both the spectroscopic and spatial domains. The particular ability of infrared (IR) imaging to explore the spatial distribution of chemically distinct species on length scales ranging from microns to kilometers demonstrates the versatility and diversity of spectroscopic imaging. In this paper, we focus on the further development of our Fourier-transform (FT) based mid-IR spectroscopic imaging technique which combines the analytical capabilities of mid-IR spectroscopy with the morphological information obtained from optical imaging. The seamless combination of spectroscopy for molecular analysis with the power of visualization represents the future of infrared microscopy. Our spectroscopic imaging instrument integrates several infrared focal-plane arrays with a Michelson step-scan interferometer, generating high-fidelity and high spectral resolution mid-infrared spectroscopic images. The instrumentation produces multidimensional, chemically specific images, while simultaneously obtaining high resolution spectra for each detector pixel. The spatial resolution of the images approaches the diffraction limit for mid-infrared wavelengths, while the spectral resolution is determined by the interferometer, and can be 4 cm-1 or higher. Data derived from a variety of materials, particularly biological samples, illustrate the capabilities of the technique for readily visualizing chemical complexity and for providing statistical data on sample heterogeneity

  11. Adaptive optics imaging of the retina.

    Science.gov (United States)

    Battu, Rajani; Dabir, Supriya; Khanna, Anjani; Kumar, Anupama Kiran; Roy, Abhijit Sinha

    2014-01-01

    Adaptive optics is a relatively new tool that is available to ophthalmologists for study of cellular level details. In addition to the axial resolution provided by the spectral-domain optical coherence tomography, adaptive optics provides an excellent lateral resolution, enabling visualization of the photoreceptors, blood vessels and details of the optic nerve head. We attempt a mini review of the current role of adaptive optics in retinal imaging. PubMed search was performed with key words Adaptive optics OR Retina OR Retinal imaging. Conference abstracts were searched from the Association for Research in Vision and Ophthalmology (ARVO) and American Academy of Ophthalmology (AAO) meetings. In total, 261 relevant publications and 389 conference abstracts were identified.

  12. Optical image encryption using multilevel Arnold transform and noninterferometric imaging

    Science.gov (United States)

    Chen, Wen; Chen, Xudong

    2011-11-01

    Information security has attracted much current attention due to the rapid development of modern technologies, such as computer and internet. We propose a novel method for optical image encryption using multilevel Arnold transform and rotatable-phase-mask noninterferometric imaging. An optical image encryption scheme is developed in the gyrator transform domain, and one phase-only mask (i.e., phase grating) is rotated and updated during image encryption. For the decryption, an iterative retrieval algorithm is proposed to extract high-quality plaintexts. Conventional encoding methods (such as digital holography) have been proven vulnerably to the attacks, and the proposed optical encoding scheme can effectively eliminate security deficiency and significantly enhance cryptosystem security. The proposed strategy based on the rotatable phase-only mask can provide a new alternative for data/image encryption in the noninterferometric imaging.

  13. Advanced Imaging Optics Utilizing Wavefront Coding.

    Energy Technology Data Exchange (ETDEWEB)

    Scrymgeour, David [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Boye, Robert [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Adelsberger, Kathleen [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2015-06-01

    Image processing offers a potential to simplify an optical system by shifting some of the imaging burden from lenses to the more cost effective electronics. Wavefront coding using a cubic phase plate combined with image processing can extend the system's depth of focus, reducing many of the focus-related aberrations as well as material related chromatic aberrations. However, the optimal design process and physical limitations of wavefront coding systems with respect to first-order optical parameters and noise are not well documented. We examined image quality of simulated and experimental wavefront coded images before and after reconstruction in the presence of noise. Challenges in the implementation of cubic phase in an optical system are discussed. In particular, we found that limitations must be placed on system noise, aperture, field of view and bandwidth to develop a robust wavefront coded system.

  14. Optical manipulation of microparticles and biological structures

    Science.gov (United States)

    Gahagan, Kevin Thomas

    1998-06-01

    We report experimental and theoretical investigations of the trapping of microparticles and biological objects using radiation pressure. Part I of this thesis presents a technique for trapping both low and high index microparticles using a single, stationary focused laser beam containing an optical vortex. Advantages of this vortex trap include the ease of implementation, a lower exposure level for high-index particles compared to a standard Gaussian beam trap, and the ability to isolate individual low-index particles in concentrated dispersions. The vortex trap is modeled using ray-tracing methods and a more precise electromagnetic model, which is accurate for particles less than 10 μm in diameter. We have measured the stable equilibrium position for two low-index particle systems (e.g., hollow glass spheres (HGS) in water, and water droplets in acetophenone (W/A)). The strength of the trap was measured for the HGS system along the longitudinal and transverse directions. We also demonstrate simultaneous trapping of a low and high index particle with a vortex beam. The stability of this dual-particle trap is found to depend on the relative particle size, the divergence angle of the beam, and the depth of the particles within the trapping chamber. Part II presents results from an interdisciplinary and collaborative investigation of an all-optical genetic engineering technique whereby Agrobacterium rhizogenes were inserted through a laser-ablated hole in the cell wall of the plant, Gingko biloba. We describe a protocol which includes the control of osmotic conditions, culturing procedures, viability assays and laser microsurgery. We succeeded in placing up to twelve viable bacteria into a single plant cell using this technique. The bacteria are believed to be slightly heated by the Gaussian beam trap. A numerical model is presented predicting a temperature rise of just a few degrees. Whereas G. biloba and A. rhitogenes were chosen for this study because of Ginkgo

  15. Imaging Atherosclerotic Plaque Calcification: Translating Biology.

    Science.gov (United States)

    Bailey, Grant; Meadows, Judith; Morrison, Alan R

    2016-08-01

    Calcification of atherosclerotic lesions was long thought to be an age - related, passive process, but increasingly data has revealed that atherosclerotic calcification is a more active process, involving complex signaling pathways and bone-like genetic programs. Initially, imaging of atherosclerotic calcification was limited to gross assessment of calcium burden, which is associated with total atherosclerotic burden and risk of cardiovascular mortality and of all cause mortality. More recently, sophisticated molecular imaging studies of the various processes involved in calcification have begun to elucidate information about plaque calcium composition and consequent vulnerability to rupture, leading to hard cardiovascular events like myocardial infarction. As such, there has been renewed interest in imaging calcification to advance risk assessment accuracy in an evolving era of precision medicine. Here we summarize recent advances in our understanding of the biologic process of atherosclerotic calcification as well as some of the molecular imaging tools used to assess it. PMID:27339750

  16. Small Animal Radionuclide Imaging With Focusing Gamma-Ray Optics

    Energy Technology Data Exchange (ETDEWEB)

    Hill, R; Decker, T; Epstein, M; Ziock, K; Pivovaroff, M J; Craig, W W; Jernigan, J G; Barber, W B; Christensen, F E; Funk, T; Hailey, C J; Hasegawa, B H; Taylor, C

    2004-02-27

    Significant effort currently is being devoted to the development of noninvasive imaging systems that allow in vivo assessment of biological and biomolecular interactions in mice and other small animals. While physiological function in small animals can be localized and imaged using conventional radionuclide imaging techniques such as single-photon emission tomography (SPECT) and positron emission tomography (PET), these techniques inherently are limited to spatial resolutions of 1-2 mm. For this reason, we are developing a small animal radionuclide imaging system (SARIS) using grazing incidence optics to focus gamma-rays emitted by {sup 125}I and other radiopharmaceuticals. We have developed a prototype optic with sufficient accuracy and precision to focus the 27.5 keV photons from {sup 125}I onto a high-resolution imaging detector. Experimental measurements from the prototype have demonstrated that the optic can focus X-rays from a microfocus X-ray tube to a spot having physical dimensions (approximately 1500 microns half-power diameter) consistent with those predicted by theory. Our theoretical and numerical analysis also indicate that an optic can be designed and build that ultimately can achieve 100 {micro}m spatial resolution with sufficient efficiency to perform in vivo single photon emission imaging studies in small animal.

  17. Synergizing superresolution optical fluctuation imaging with single molecule localization microscopy

    CERN Document Server

    Schidorsky, Shachar; Razvag, Yair; Golan, Yonatan; Weiss, Shimon; Sherman, Eilon

    2016-01-01

    Single molecule localization microscopy (SMLM) techniques enable imaging biological samples well beyond the diffraction limit of light, but they vary significantly in their spatial and temporal resolutions. High-order statistical analysis of temporal fluctuations as in superresolution optical fluctuation imaging (SOFI) also enable imaging beyond diffraction limit, but usually at a lower resolution as compared to SMLM. Since the same data format is acquired for both methods, their algorithms can be applied to the same data set, and thus may be combined synergistically to improve overall imaging performance. Here, we find that SOFI converges much faster than SMLM, provides additive information to SMLM, and can efficiently reject background. We then show how SOFI-assisted SMLM imaging can improve SMLM image reconstruction by rejecting common sources of background, especially under low signal-to-background conditions. The performance of our approach was evaluated using a realistic simulation of fluorescence imagi...

  18. Optical encryption with selective computational ghost imaging

    Science.gov (United States)

    Zafari, Mohammad; kheradmand, Reza; Ahmadi-Kandjani, Sohrab

    2014-10-01

    Selective computational ghost imaging (SCGI) is a technique which enables the reconstruction of an N-pixel image from N measurements or less. In this paper we propose an optical encryption method based on SCGI and experimentally demonstrate that this method has much higher security under eavesdropping and unauthorized accesses compared with previous reported methods.

  19. Impacts of optical turbulence on underwater imaging

    Science.gov (United States)

    Hou, Weilin; Woods, S.; Goode, W.; Jarosz, E.; Weidemann, A.

    2011-06-01

    Optical signal transmission underwater is of vital interests to both civilian and military applications. The range and signal to noise during the transmission, as a function of system and water optical properties determines the effectiveness of EO technology. These applications include diver visibility, search and rescue, mine detection and identification, and optical communications. The impact of optical turbulence on underwater imaging has been postulated and observed by many researchers. However, no quantative studies have been done until recently, in terms of both the environmental conditions, and impacts on image quality as a function of range and spatial frequencies. Image data collected from field measurements during SOTEX (Skaneateles Optical Turbulence Exercise, July 22-31, 2010) using the Image Measurement Assembly for Subsurface Turbulence (IMAST) are presented. Optical properties of the water column in the field were measured using WETLab's ac-9 and Laser In Situ Scattering and Transmissometer (LISST, Sequoia Scientific), in coordination with physical properties including CTD (Seabird), dissipation rate of kinetic energy and heat, using both the Vector velocimeter and CT combo (Nortek and PME), and shear probe based Vertical Microstructure Profiler (VMP, Rockland). The strong stratification structure in the water column provides great opportunity to observe various dissipation strengths throughout the water column, which corresponds directly with image quality as shown. Initial results demonstrate general agreement between data collected and model prediction, while discrepancies between measurements and model suggest higher spatial and temporal observations are needed in the future.

  20. NAOMI: nanoparticle assisted optical molecular imaging

    Science.gov (United States)

    Faber, Dirk J.; van Velthoven, Mirjam E. J.; de Bruin, Martijn; Aalders, Maurice C. G.; Verbraak, Frank D.; Graf, Christina; van Leeuwen, Ton G.

    2006-02-01

    Our first steps towards nanoparticle assisted, optical molecular imaging (NAOMI) using OCT as the imaging modality are presented. We derive an expression to estimate the sensitivity of this technique. We propose to use nanoparticles based on biodegradable polymers, loaded with suitable dyes as contrast agent, and outline a method for establishing their desired optical properties prior to synthesis. This report presents preliminary results of our investigation on the use of nanoshells to serve as contrast agents We injected nanoshells with specific contrast features in the 800 nm wavelength region in excised porcine eyes. The nanoshells showed up as bright reflecting structures in the OCT images, which confirm their potential as contrast agents.

  1. Positron emission tomography and optical tissue imaging

    Science.gov (United States)

    Falen, Steven W.; Hoefer, Richard A.; Majewski, Stanislaw; McKisson, John; Kross, Brian; Proffitt, James; Stolin, Alexander; Weisenberger, Andrew G.

    2012-05-22

    A mobile compact imaging system that combines both PET imaging and optical imaging into a single system which can be located in the operating room (OR) and provides faster feedback to determine if a tumor has been fully resected and if there are adequate surgical margins. While final confirmation is obtained from the pathology lab, such a device can reduce the total time necessary for the procedure and the number of iterations required to achieve satisfactory resection of a tumor with good margins.

  2. Cloned images and the optical unconscious

    DEFF Research Database (Denmark)

    Romic, Bojana

    In this presentation I would discuss the term optical unconscious as defined in the writings of Walter Benjamin and Rosalind Krauss, and propose a broadened definition of this term, taking into account the new media spreadability (Jenkins et al., 2013) and 'image cloning' (W.J.T. Mitchell, 2008)....... of Images 2001-04. in: Costello, D. and Willsdon, D. (eds) (2008) The Life and Death of Images: Ethics and Aesthetics. London: Tate Publishing....

  3. Optical characterization of biological tissues and rare earth nanoparticles

    Science.gov (United States)

    Barrera, Frederick John, III

    The ubiquitous use of lasers as both a diagnostic and therapeutic tool for medical applications (e.g. laser surgery, photoacoustic imaging, photodynamic therapy etc.), had rendered the understanding of optical properties of a biological medium critically important. The development of biomedical devices for the purposes of imaging or treatment requires a detailed investigation of these properties. Indeed, diagnostic monitoring of blood in vivo depends on knowledge of the distribution of light due to scattering in a blood medium. In addition, many optical properties of tissues have not been investigated experimentally at many clinically relevant wavelengths. The quantification of the scattering and absorptive behavior of tissue and its interaction with electromagnetic radiation is still at the core of predicting the outcome of a desired clinical effect. Therefore, the first portion of this Dissertation is a thorough characterization of ocular tissues in vitro using reflectance and transmittance spectroscopic techniques and computational models to extract and enlist a systematic study at wavelengths in the visible spectral region. The Kubelka-Munk (KM), Inverse Adding Doubling (IAD), and Inverse Monte Carlo (IMC) methods were used to determine the absorption and scattering coefficients and contrasted. The second portion of this Dissertation is an investigation of the optical and spectroscopic properties of novel rare earth Y2O3 and Nd3+:Y2O 3nanoparticles in a blood medium. Reflectance and transmittance measurements were performed and the absorption and scattering properties for the nanoparticle/blood samples were determined by computational methods and compared. Absorption and emission of Y2O3 and Nd3+:Y 2O3nanoparticle/blood medium revealed their utility as biomarkers.

  4. Imaging morphogenesis: technological advances and biological insights.

    Science.gov (United States)

    Keller, Philipp J

    2013-06-01

    Morphogenesis, the development of the shape of an organism, is a dynamic process on a multitude of scales, from fast subcellular rearrangements and cell movements to slow structural changes at the whole-organism level. Live-imaging approaches based on light microscopy reveal the intricate dynamics of this process and are thus indispensable for investigating the underlying mechanisms. This Review discusses emerging imaging techniques that can record morphogenesis at temporal scales from seconds to days and at spatial scales from hundreds of nanometers to several millimeters. To unlock their full potential, these methods need to be matched with new computational approaches and physical models that help convert highly complex image data sets into biological insights.

  5. Femtosecond diffractive imaging of biological cells

    Science.gov (United States)

    Marvin Seibert, M.; Boutet, Sébastien; Svenda, Martin; Ekeberg, Tomas; Maia, Filipe R. N. C.; Bogan, Michael J.; Tîmneanu, Nicusor; Barty, Anton; Hau-Riege, Stefan; Caleman, Carl; Frank, Matthias; Benner, Henry; Y Lee, Joanna; Marchesini, Stefano; Shaevitz, Joshua W.; Fletcher, Daniel A.; Bajt, Sasa; Andersson, Inger; Chapman, Henry N.; Hajdu, Janos

    2010-10-01

    In a flash diffraction experiment, a short and extremely intense x-ray pulse illuminates the sample to obtain a diffraction pattern before the onset of significant radiation damage. The over-sampled diffraction pattern permits phase retrieval by iterative phasing methods. Flash diffractive imaging was first demonstrated on an inorganic test object (Chapman et al 2006 Nat. Phys. 2 839-43). We report here experiments on biological systems where individual cells were imaged, using single, 10-15 fs soft x-ray pulses at 13.5 nm wavelength from the FLASH free-electron laser in Hamburg. Simulations show that the pulse heated the sample to about 160 000 K but not before an interpretable diffraction pattern could be obtained. The reconstructed projection images return the structures of the intact cells. The simulations suggest that the average displacement of ions and atoms in the hottest surface layers remained below 3 Å during the pulse.

  6. Femtosecond diffractive imaging of biological cells

    Energy Technology Data Exchange (ETDEWEB)

    Marvin Seibert, M; Boutet, Sebastien; Svenda, Martin; Ekeberg, Tomas; Maia, Filipe R N C; TImneanu, Nicusor; Caleman, Carl; Hajdu, Janos [Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3, Box 596, SE-75124 Uppsala (Sweden); Bogan, Michael J [SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 (United States); Barty, Anton; Hau-Riege, Stefan; Frank, Matthias; Benner, Henry [Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, CA 94550 (United States); Lee, Joanna Y [Department of Biology, Stanford University, Stanford, CA 94305 (United States); Marchesini, Stefano [Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States); Shaevitz, Joshua W [150 Carl Icahn Laboratory, Princeton University, Princeton, NJ 08544 (United States); Fletcher, Daniel A [Bioengineering and Biophysics, University of California, Berkeley, CA 94720 (United States); Bajt, Sasa [Photon Science, DESY, Notkestrasse 85, 22607 Hamburg (Germany); Andersson, Inger [Department of Molecular Biology, Swedish University of Agricultural Sciences, Husargatan 3, Box 590, SE-751 24 Uppsala (Sweden); Chapman, Henry N, E-mail: marvin@xray.bmc.uu.s, E-mail: janos@xray.bmc.uu.s [Center for Free-Electron Laser Science, University of Hamburg and DESY, Notkestrasse 85, Hamburg (Germany)

    2010-10-14

    In a flash diffraction experiment, a short and extremely intense x-ray pulse illuminates the sample to obtain a diffraction pattern before the onset of significant radiation damage. The over-sampled diffraction pattern permits phase retrieval by iterative phasing methods. Flash diffractive imaging was first demonstrated on an inorganic test object (Chapman et al 2006 Nat. Phys. 2 839-43). We report here experiments on biological systems where individual cells were imaged, using single, 10-15 fs soft x-ray pulses at 13.5 nm wavelength from the FLASH free-electron laser in Hamburg. Simulations show that the pulse heated the sample to about 160 000 K but not before an interpretable diffraction pattern could be obtained. The reconstructed projection images return the structures of the intact cells. The simulations suggest that the average displacement of ions and atoms in the hottest surface layers remained below 3 A during the pulse.

  7. Three-dimensional multifunctional optical coherence tomography for skin imaging

    Science.gov (United States)

    Li, En; Makita, Shuichi; Hong, Young-Joo; Kasaragod, Deepa; Sasaoka, Tomoko; Yamanari, Masahiro; Sugiyama, Satoshi; Yasuno, Yoshiaki

    2016-02-01

    Optical coherence tomography (OCT) visualizes cross-sectional microstructures of biological tissues. Recent developments of multifunctional OCT (MF-OCT) provides multiple optical contrasts which can reveal currently unknown tissue properties. In this contribution we demonstrate multifunctional OCT specially designed for dermatological investigation. And by utilizing it to measure four different body parts of in vivo human skin, three-dimensional scattering OCT, OCT angiography, polarization uniformity tomography, and local birefringence tomography images were obtained by a single scan. They respectively contrast the structure and morphology, vasculature, melanin content and collagen traits of the tissue.

  8. Dynamic fluorescence lifetime imaging based on acousto-optic deflectors

    Science.gov (United States)

    Yan, Wei; Peng, Xiao; Qi, Jing; Gao, Jian; Fan, Shunping; Wang, Qi; Qu, Junle; Niu, Hanben

    2014-11-01

    We report a dynamic fluorescence lifetime imaging (D-FLIM) system that is based on a pair of acousto-optic deflectors for the random regions of interest (ROI) study in the sample. The two-dimensional acousto-optic deflector devices are used to rapidly scan the femtosecond excitation laser beam across the sample, providing specific random access to the ROI. Our experimental results using standard fluorescent dyes in live cancer cells demonstrate that the D-FLIM system can dynamically monitor the changing process of the microenvironment in the ROI in live biological samples.

  9. Optical encryption for large-sized images

    Science.gov (United States)

    Sanpei, Takuho; Shimobaba, Tomoyoshi; Kakue, Takashi; Endo, Yutaka; Hirayama, Ryuji; Hiyama, Daisuke; Hasegawa, Satoki; Nagahama, Yuki; Sano, Marie; Oikawa, Minoru; Sugie, Takashige; Ito, Tomoyoshi

    2016-02-01

    We propose an optical encryption framework that can encrypt and decrypt large-sized images beyond the size of the encrypted image using our two methods: random phase-free method and scaled diffraction. In order to record the entire image information on the encrypted image, the large-sized images require the random phase to widely diffuse the object light over the encrypted image; however, the random phase gives rise to the speckle noise on the decrypted images, and it may be difficult to recognize the decrypted images. In order to reduce the speckle noise, we apply our random phase-free method to the framework. In addition, we employ scaled diffraction that calculates light propagation between planes with different sizes by changing the sampling rates.

  10. Multimodal optical imaging for detecting breast cancer

    Science.gov (United States)

    Patel, Rakesh; Khan, Ashraf; Wirth, Dennis; Kamionek, Michal; Kandil, Dina; Quinlan, Robert; Yaroslavsky, Anna N.

    2012-06-01

    The goal of the study was to evaluate wide-field and high-resolution multimodal optical imaging, including polarization, reflectance, and fluorescence for the intraoperative detection of breast cancer. Lumpectomy specimens were stained with 0.05 mg/ml aqueous solution of methylene blue (MB) and imaged. Wide-field reflectance images were acquired between 390 and 750 nm. Wide-field fluorescence images were excited at 640 nm and registered between 660 and 750 nm. High resolution confocal reflectance and fluorescence images were excited at 642 nm. Confocal fluorescence images were acquired between 670 nm and 710 nm. After imaging, the specimens were processed for hematoxylin and eosin (H&E) histopathology. Histological slides were compared with wide-field and high-resolution optical images to evaluate correlation of tumor boundaries and cellular morphology, respectively. Fluorescence polarization imaging identified the location, size, and shape of the tumor in all the cases investigated. Averaged fluorescence polarization values of tumor were higher as compared to normal tissue. Statistical analysis confirmed the significance of these differences. Fluorescence confocal imaging enabled cellular-level resolution. Evaluation and statistical analysis of MB fluorescence polarization values registered from single tumor and normal cells demonstrated higher fluorescence polarization from cancer. Wide-field high-resolution fluorescence and fluorescence polarization imaging shows promise for intraoperative delineation of breast cancers.

  11. Special issue on high-resolution optical imaging

    Science.gov (United States)

    Smith, Peter J. S.; Davis, Ilan; Galbraith, Catherine G.; Stemmer, Andreas

    2013-09-01

    The pace of development in the field of advanced microscopy is truly breath-taking, and is leading to major breakthroughs in our understanding of molecular machines and cell function. This special issue of Journal of Optics draws attention to a number of interesting approaches, ranging from fluorescence and imaging of unlabelled cells, to computational methods, all of which are describing the ever increasing detail of the dynamic behaviour of molecules in the living cell. This is a field which traditionally, and currently, demonstrates a marvellous interplay between the disciplines of physics, chemistry and biology, where apparent boundaries to resolution dissolve and living cells are viewed in ever more clarity. It is fertile ground for those interested in optics and non-conventional imaging to contribute high-impact outputs in the fields of cell biology and biomedicine. The series of articles presented here has been selected to demonstrate this interdisciplinarity and to encourage all those with a background in the physical sciences to 'dip their toes' into the exciting and dynamic discoveries surrounding cell function. Although single molecule super-resolution microscopy is commercially available, specimen preparation and interpretation of single molecule data remain a major challenge for scientists wanting to adopt the techniques. The paper by Allen and Davidson [1] provides a much needed detailed introduction to the practical aspects of stochastic optical reconstruction microscopy, including sample preparation, image acquisition and image analysis, as well as a brief description of the different variants of single molecule localization microscopy. Since super-resolution microscopy is no longer restricted to three-dimensional imaging of fixed samples, the review by Fiolka [2] is a timely introduction to techniques that have been successfully applied to four-dimensional live cell super-resolution microscopy. The combination of multiple high-resolution techniques

  12. Sensorless adaptive optics and the effect of field of view in biological second harmonic generation microscopy

    OpenAIRE

    Vandendriessche, Stefaan; Vanbel, Maarten; Verbiest, Thierry

    2014-01-01

    In light of the population aging in many developed countries, there is a great economical interest in improving the speed and cost-efficiency of healthcare. Clinical diagnosis tools are key to these improvements, with biophotonics providing a means to achieve them. Standard optical microscopy of in vitro biological samples has been an important diagnosis tool since the invention of the microscope, with well known resolution limits. Nonlinear optical imaging improves on the resolution limits o...

  13. Intensity interferometry: Optical imaging with kilometer baselines

    CERN Document Server

    Dravins, Dainis

    2016-01-01

    Optical imaging with microarcsecond resolution will reveal details across and outside stellar surfaces but requires kilometer-scale interferometers, challenging to realize either on the ground or in space. Intensity interferometry, electronically connecting independent telescopes, has a noise budget that relates to the electronic time resolution, circumventing issues of atmospheric turbulence. Extents up to a few km are becoming realistic with arrays of optical air Cherenkov telescopes (primarily erected for gamma-ray studies), enabling an optical equivalent of radio interferometer arrays. Pioneered by Hanbury Brown and Twiss, digital versions of the technique have now been demonstrated, reconstructing diffraction-limited images from laboratory measurements over hundreds of optical baselines. This review outlines the method from its beginnings, describes current experiments, and sketches prospects for future observations.

  14. LDA optical setup using holographic imaging configuration

    Science.gov (United States)

    Ghosh, Abhijit; Nirala, A. K.

    2015-11-01

    This paper describes one of the possible ways for improving fringe quality at LDA measuring volume using a holographic imaging configuration consisting of a single hololens. For its comparative study with a conventional imaging configuration, a complete characterization of fringes formed at the measurement volume by both the configuration is presented. Results indicate the qualitative as well as quantitative improvement of the fringes formed at measurement volume by the holographic imaging configuration. Hence it is concluded that use of holographic imaging configuration for making LDA optical setup is a better choice than the conventional one.

  15. Nonlinear Optical Image Processing with Bacteriorhodopsin Films

    Science.gov (United States)

    Downie, John D.; Deiss, Ron (Technical Monitor)

    1994-01-01

    The transmission properties of some bacteriorhodopsin film spatial light modulators are uniquely suited to allow nonlinear optical image processing operations to be applied to images with multiplicative noise characteristics. A logarithmic amplitude transmission feature of the film permits the conversion of multiplicative noise to additive noise, which may then be linearly filtered out in the Fourier plane of the transformed image. The bacteriorhodopsin film displays the logarithmic amplitude response for write beam intensities spanning a dynamic range greater than 2.0 orders of magnitude. We present experimental results demonstrating the principle and capability for several different image and noise situations, including deterministic noise and speckle. Using the bacteriorhodopsin film, we successfully filter out image noise from the transformed image that cannot be removed from the original image.

  16. Optics of astigmatism and retinal image quality

    OpenAIRE

    Vilaseca, M.; Díaz-Doutón, F.; Luque, S. O.; Aldaba, M.; Arjona, M.; Pujol, J.

    2012-01-01

    In the first part of this chapter, the optical condition of astigmatism is defined. The main causes and available classifications of ocular astigmatism are briefly described. The most relevant optical properties of image formation in an astigmatic eye are analysed and compared to that of an emmetropic eye and an eye with spherical ametropia. The spectacle prescription and axis notation for astigmatism are introduced, and the correction of astigmatism by means of lenses is briefly described. ...

  17. MR imaging of optic chiasmatic glioma

    International Nuclear Information System (INIS)

    To evaluate the MR findings of optic chiasmatic glioma (OCG). MR images were reviewed in 14 patients with histologically proven OCGs and one with neurofibromatosis type 1 (male: female=8:7, mean age=8.5 years.) Tumors were evaluated retrospectively with respect to their size, involvement of the optic pathway, transverse/vertical diameter ratio based on the coronal plane, signal intensities, enhancement pattern, and the presence of a cyst or calcification. Tumors was measured 1.7-5.5 (mean, 3.3) cm in maximum diameter. In ten patients, the optic tracts were involved, and in three, the optic nerves. In 12 patients, tumors had a transverse/vertical diameter ratio of over one, and showed iso (n=5) or low signal intensity (n=10) compared with gray matter at T1-weighted imaging and high signal intensity (n=15) at T2-weighted imaging. Cyst formations were ween in eight patients, and tumors were enhanced strongly and homogeneously in nine and peripherally in four. In seven three was associated hydrocephalus, and in one, calcification. OCG is a suprasellar tumor which can extend into the optic pathway, has a transverse/vertical diameter ratio of more than one, and shows strong and homogeneous enhancement. These MR imaging findings are useful for the differentiation of OCG from other suprasellar tumors

  18. MR imaging of optic chiasmatic glioma

    Energy Technology Data Exchange (ETDEWEB)

    Hong, Seong Sook; Lee, Ho Kyu; Kim, Hyun Jin; Ryu, Meung Sun; Goo, Hyun Woo; Yoon, Chong Hyun; Choi, Choong Gon; Suh, Dae Chul; Ra, Young Shin; Khang, Shin Kwang [University of Ulsan College of Medicine, Seoul (Korea, Republic of)

    2002-08-01

    To evaluate the MR findings of optic chiasmatic glioma (OCG). MR images were reviewed in 14 patients with histologically proven OCGs and one with neurofibromatosis type 1 (male: female=8:7, mean age=8.5 years.) Tumors were evaluated retrospectively with respect to their size, involvement of the optic pathway, transverse/vertical diameter ratio based on the coronal plane, signal intensities, enhancement pattern, and the presence of a cyst or calcification. Tumors was measured 1.7-5.5 (mean, 3.3) cm in maximum diameter. In ten patients, the optic tracts were involved, and in three, the optic nerves. In 12 patients, tumors had a transverse/vertical diameter ratio of over one, and showed iso (n=5) or low signal intensity (n=10) compared with gray matter at T1-weighted imaging and high signal intensity (n=15) at T2-weighted imaging. Cyst formations were ween in eight patients, and tumors were enhanced strongly and homogeneously in nine and peripherally in four. In seven three was associated hydrocephalus, and in one, calcification. OCG is a suprasellar tumor which can extend into the optic pathway, has a transverse/vertical diameter ratio of more than one, and shows strong and homogeneous enhancement. These MR imaging findings are useful for the differentiation of OCG from other suprasellar tumors.

  19. Non-destructive imaging of optical nanofibres

    CERN Document Server

    Madsen, Lars S; Rubinsztein-Dunlop, Halina; Bowen, Warwick P

    2016-01-01

    Single-mode optical nanofibres are a central component of a broad range of applications and emerging technologies. Their fabrication has been extensively studied over the past decade, but imaging of the final sub-micrometre products has been restricted to destructive or low-precision techniques. Here we demonstrate an optical scattering-based scanning method that uses a probe nanofibre to locally scatter the evanescent field of a sample nanofibre. The method does not damage the sample nanofibre and is easily implemented only using the same equipment as in a standard fibre puller setup. We demonstrate sub-nanometre radial resolution at video rates (0.7 nm in 10 ms) on single mode nanofibres, allowing for a complete high-precision profile to be obtained within minutes of fabrication. The method thus enables non-destructive, fast and precise characterisation of optical nanofibers, with applications ranging from optical sensors and cold atom traps to non-linear optics.

  20. Optical clearing for luminal organ imaging with ultrahigh-resolution optical coherence tomography.

    Science.gov (United States)

    Liang, Yanmei; Yuan, Wu; Mavadia-Shukla, Jessica; Li, Xingde

    2016-08-01

    The imaging depth of optical coherence tomography (OCT) in highly scattering biological tissues (such as luminal organs) is limited, particularly for OCT operating at shorter wavelength regions (such as around 800 nm). For the first time, the optical clearing effect of the mixture of liquid paraffin and glycerol on luminal organs was explored with ultrahigh-resolution spectral domain OCT at 800 nm. Ex vivo studies were performed on pig esophagus and bronchus, and guinea pig esophagus with different volume ratios of the mixture. We found that the mixture of 40% liquid paraffin had the best optical clearing effect on esophageal tissues with a short effective time of ∼ 10 min, which means the clearing effect occurs about 10 min after the application of the clearing agent. In contrast, no obvious optical clearing effect was identified on bronchus tissues. PMID:27335154

  1. Diffuse Optical Tomography for Brain Imaging: Theory

    Science.gov (United States)

    Yuan, Zhen; Jiang, Huabei

    Diffuse optical tomography (DOT) is a noninvasive, nonionizing, and inexpensive imaging technique that uses near-infrared light to probe tissue optical properties. Regional variations in oxy- and deoxy-hemoglobin concentrations as well as blood flow and oxygen consumption can be imaged by monitoring spatiotemporal variations in the absorption spectra. For brain imaging, this provides DOT unique abilities to directly measure the hemodynamic, metabolic, and neuronal responses to cells (neurons), and tissue and organ activations with high temporal resolution and good tissue penetration. DOT can be used as a stand-alone modality or can be integrated with other imaging modalities such as fMRI/MRI, PET/CT, and EEG/MEG in studying neurophysiology and pathology. This book chapter serves as an introduction to the basic theory and principles of DOT for neuroimaging. It covers the major aspects of advances in neural optical imaging including mathematics, physics, chemistry, reconstruction algorithm, instrumentation, image-guided spectroscopy, neurovascular and neurometabolic coupling, and clinical applications.

  2. Scalable multiplexing for parallel imaging with interleaved optical coherence tomography.

    Science.gov (United States)

    Lee, Hee Yoon; Marvdashti, Tahereh; Duan, Lian; Khan, Saara A; Ellerbee, Audrey K

    2014-09-01

    We demonstrate highly parallel imaging with interleaved optical coherence tomography (iOCT) using an in-house-fabricated, air-spaced virtually-imaged phased array (VIPA). The air-spaced VIPA performs spectral encoding of the interferograms from multiple lateral points within a single sweep of the source and allows us to tune and balance several imaging parameters: number of multiplexed points, ranging depth, and sensitivity. In addition to a thorough discussion of the parameters and operating principles of the VIPA, we experimentally demonstrate the effect of different VIPA designs on the multiplexing potential of iOCT. Using a 200-kHz light source, we achieve an effective A-scan rate of 3.2-MHz by multiplexing 16 lateral points onto a single wavelength sweep. The improved sensitivity of this system is demonstrated for 3D imaging of biological samples such as a human finger and a fruit fly. PMID:25401031

  3. Accelerated wavefront determination technique for optical imaging through scattering medium

    Science.gov (United States)

    He, Hexiang; Wong, Kam Sing

    2016-03-01

    Wavefront shaping applied on scattering light is a promising optical imaging method in biological systems. Normally, optimized modulation can be obtained by a Liquid-Crystal Spatial Light Modulator (LC-SLM) and CCD hardware iteration. Here we introduce an improved method for this optimization process. The core of the proposed method is to firstly detect the disturbed wavefront, and then to calculate the modulation phase pattern by computer simulation. In particular, phase retrieval method together with phase conjugation is most effective. In this way, the LC-SLM based system can complete the wavefront optimization and imaging restoration within several seconds which is two orders of magnitude faster than the conventional technique. The experimental results show good imaging quality and may contribute to real time imaging recovery in scattering medium.

  4. Optical imaging of cancer and cell death

    NARCIS (Netherlands)

    Xie, Bangwen

    2013-01-01

    The aim of the work included in this PhD thesis was to explore the diverse application possibility of using NIR fluorescent probes with specific properties to visualize and characterize cancer and cell death. In this thesis, we mainly focus on optical imaging and its application, both at microscopic

  5. Exploiting data redundancy in computational optical imaging.

    Science.gov (United States)

    Munro, Peter R T

    2015-11-30

    We present an algorithm which exploits data redundancy to make computational, coherent, optical imaging more computationally efficient. This algorithm specifically addresses the computation of how light scattered by a sample is collected and coherently detected. It is of greatest benefit in the simulation of broadband optical systems employing coherent detection, such as optical coherence tomography. Although also amenable to time-harmonic data, the algorithm is designed to be embedded within time-domain electromagnetic scattering simulators such as the psuedo-spectral and finite-difference time domain methods. We derive the algorithm in detail as well as criteria which ensure accurate execution of the algorithm. We present simulations that verify the developed algorithm and demonstrate its utility. We expect this algorithm to be important to future developments in computational imaging.

  6. Depth-encoded synthetic aperture optical coherence tomography of biological tissues with extended focal depth.

    Science.gov (United States)

    Mo, Jianhua; de Groot, Mattijs; de Boer, Johannes F

    2015-02-23

    Optical coherence tomography (OCT) has proven to be able to provide three-dimensional (3D) volumetric images of scattering biological tissues for in vivo medical diagnostics. Unlike conventional optical microscopy, its depth-resolving ability (axial resolution) is exclusively determined by the laser source and therefore invariant over the full imaging depth. In contrast, its transverse resolution is determined by the objective's numerical aperture and the wavelength which is only approximately maintained over twice the Rayleigh range. However, the prevailing laser sources for OCT allow image depths of more than 5 mm which is considerably longer than the Rayleigh range. This limits high transverse resolution imaging with OCT. Previously, we reported a novel method to extend the depth-of-focus (DOF) of OCT imaging in Mo et al.Opt. Express 21, 10048 (2013)]. The approach is to create three different optical apertures via pupil segmentation with an annular phase plate. These three optical apertures produce three OCT images from the same sample, which are encoded to different depth positions in a single OCT B-scan. This allows for correcting the defocus-induced curvature of wave front in the pupil so as to improve the focus. As a consequence, the three images originating from those three optical apertures can be used to reconstruct a new image with an extended DOF. In this study, we successfully applied this method for the first time to both an artificial phantom and biological tissues over a four times larger depth range. The results demonstrate a significant DOF improvement, paving the way for 3D high resolution OCT imaging beyond the conventional Rayleigh range. PMID:25836528

  7. Fast optical imaging of human brain function

    Directory of Open Access Journals (Sweden)

    Gabriele Gratton

    2010-06-01

    Full Text Available Great advancements in brain imaging during the last few decades have opened a large number of new possibilities for neuroscientists. The most dominant methodologies (electrophysiological and magnetic resonance-based methods emphasize temporal and spatial information, respectively. However, theorizing about brain function has recently emphasized the importance of rapid (within 100 ms or so interactions between different elements of complex neuronal networks. Fast optical imaging, and in particular the event-related optical signal (EROS, a technology that has emerged over the last 15 years may provide descriptions of localized (to sub-cm level brain activity with a temporal resolution of less than 100 ms. The main limitations of EROS are its limited penetration, which allows us to image cortical structures not deeper than 3 cm from the surface of the head, and its low signal-to-noise ratio. Advantages include the fact that EROS is compatible with most other imaging methods, including electrophysiological, magnetic resonance, and trans-cranial magnetic stimulation techniques, with which can be recorded concurrently. In this paper we present a summary of the research that has been conducted so far on fast optical imaging, including evidence for the possibility of recording neuronal signals with this method, the properties of the signals, and various examples of applications to the study of human cognitive neuroscience. Extant issues, controversies, and possible future developments are also discussed.

  8. Analysis of optical amplifier noise in coherent optical communication systems with optical image rejection receivers

    DEFF Research Database (Denmark)

    Jørgensen, Bo Foged; Mikkelsen, Benny; Mahon, Cathal J.

    1992-01-01

    performance. Two types of optical image rejection receivers are investigated: a novel, all-optical configuration and the conventional, microwave-based configuration. The analysis shows that local oscillator-spontaneous emission beat noise (LO-SP), signal-spontaneous emission beat noise (S-SP), and spontaneous......-spontaneous beat noise (SP-SP) can all be reduced by 3 dB, thereby doubling the dynamic range of the optical amplifier. A 2.5-dB improvement in dynamic range has been demonstrated experimentally with the all-optical image rejection configuration. The implications of the increased dynamic range thus obtained...

  9. Optical Properties and In Vitro Biological Studies of Oligonucleotide-Modified Quantum Dots

    Directory of Open Access Journals (Sweden)

    Valérie A. Gérard

    2013-01-01

    Full Text Available Water-soluble semiconducting nanocrystals or quantum dots (QDs have attracted much interest in recent years due to their tuneable emission and potential applications in photonics and biological imaging. Fluorescence resonance energy transfer (FRET processes are very important for elucidating biochemical mechanisms in vitro, and QDs constitute an excellent substrate for this purpose. In this work, new oligonucleotide-functionalised CdTe-based QDs were prepared, characterised and biologically tested. These QDs demonstrated interesting optical properties as well as remarkable in vitro behaviour and potential for a range of biological applications.

  10. Horizontal Shear Wave Imaging of Large Optics

    Energy Technology Data Exchange (ETDEWEB)

    Quarry, M J

    2007-09-05

    When complete the National Ignition Facility (NIF) will be the world's largest and most energetic laser and will be capable of achieving for the first time fusion ignition in the laboratory. Detecting optics features within the laser beamlines and sizing them at diameters of 0.1 mm to 10 mm allows timely decisions concerning refurbishment and will help with the routine operation of the system. Horizontally polarized shear waves at 10 MHz were shown to accurately detect, locate, and size features created by laser operations from 0.5 mm to 8 mm by placing sensors at the edge of the optic. The shear wave technique utilizes highly directed beams. The outer edge of an optic can be covered with shear wave transducers on four sides. Each transducer sends a pulse into the optic and any damage reflects the pulse back to the transmitter. The transducers are multiplexed, and the collected time waveforms are enveloped and replicated across the width of the element. Multiplying the data sets from four directions produces a map of reflected amplitude to the fourth power, which images the surface of the optic. Surface area can be measured directly from the image, and maximum depth was shown to be correlated to maximum amplitude of the reflected waveform.

  11. Topographic, electrochemical, and optical images captured using standing approach mode scanning electrochemical/optical microscopy.

    Science.gov (United States)

    Takahashi, Yasufumi; Hirano, Yu; Yasukawa, Tomoyuki; Shiku, Hitoshi; Yamada, Hiroshi; Matsue, Tomokazu

    2006-12-01

    We developed a high-resolution scanning electrochemical microscope (SECM) for the characterization of various biological materials. Electrode probes were fabricated by Ti/Pt sputtering followed by parylene C-vapor deposition polymerization on the pulled optical fiber or glass capillary. The effective electrode radius estimated from the cyclic voltammogram of ferrocyanide was found to be 35 nm. The optical aperture size was less than 170 nm, which was confirmed from the cross section of the near-field scanning optical microscope (NSOM) image of the quantum dot (QD) particles with diameters in the range of 10-15 nm. The feedback mechanism controlling the probe-sample distance was improved by vertically moving the probe by 0.1-3 microm to reduce the damage to the samples. This feedback mode, defined as "standing approach (STA) mode" (Yamada, H.; Fukumoto, H.; Yokoyama, T.; Koike, T. Anal. Chem. 2005, 77, 1785-1790), has allowed the simultaneous electrochemical and topographic imaging of the axons and cell body of a single PC12 cell under physiological conditions for the first time. STA-mode feedback imaging functions better than tip-sample regulation by the conventionally available AFM. For example, polystyrene beads (diameter approximately 6 microm) was imaged using the STA-mode SECM, whereas imaging was not possible using a conventional AFM instrument. PMID:17128996

  12. Noise-compensated homotopic non-local regularized reconstruction for rapid retinal optical coherence tomography image acquisitions

    OpenAIRE

    Liu, Chenyi; Wong, Alexander; Fieguth, Paul; Bizheva, Kostadinka; Bie, Hongxia

    2014-01-01

    Background Optical coherence tomography (OCT) is a minimally invasive imaging technique, which utilizes the spatial and temporal coherence properties of optical waves backscattered from biological material. Recent advances in tunable lasers and infrared camera technologies have enabled an increase in the OCT imaging speed by a factor of more than 100, which is important for retinal imaging where we wish to study fast physiological processes in the biological tissue. However, the high scanning...

  13. Combining Different Modalities for 3D Imaging of Biological Objects

    CERN Document Server

    Tsyganov, E; Kulkarni, P; Mason, R; Parkey, R; Seliuonine, S; Shay, J; Soesbe, T; Zhezher, V; Zinchenko, A I

    2005-01-01

    A resolution enhanced NaI(Tl)-scintillator micro-SPECT device using pinhole collimator geometry has been built and tested with small animals. This device was constructed based on a depth-of-interaction measurement using a thick scintillator crystal and a position sensitive PMT to measure depth-dependent scintillator light profiles. Such a measurement eliminates the parallax error that degrades the high spatial resolution required for small animal imaging. This novel technique for 3D gamma-ray detection was incorporated into the micro-SPECT device and tested with a $^{57}$Co source and $^{98m}$Tc-MDP injected in mice body. To further enhance the investigating power of the tomographic imaging different imaging modalities can be combined. In particular, as proposed and shown in this paper, the optical imaging permits a 3D reconstruction of the animal's skin surface thus improving visualization and making possible depth-dependent corrections, necessary for bioluminescence 3D reconstruction in biological objects. ...

  14. Combining different modalities for 3D imaging of biological objects

    International Nuclear Information System (INIS)

    A resolution enhanced NaI(Tl)-scintillator micro-SPECT device using pinhole collimator geometry has been built and tested with small animals. This device was constructed based on a depth-of-interaction measurement using a thick scintillator crystal and a position sensitive PMT to measure depth-dependent scintillator light profiles. Such a measurement eliminates the parallax error that degrades the high spatial resolution required for small animal imaging. This novel technique for 3D gamma-ray detection was incorporated into the micro-SPECT device and tested with a 57Co source and 98mTc-MDP injected in mice body. To further enhance the investigating power of the tomographic imaging different imaging modalities can be combined. In particular, as proposed and shown, the optical imaging permits a 3D reconstruction of the animal's skin surface thus improving visualization and making possible depth-dependent corrections, necessary for bioluminescence 3D reconstruction in biological objects. This structural information can provide even more detail if the x-ray tomography is used as presented in the paper

  15. Optical sensor for heat conduction measurement in biological tissue

    Science.gov (United States)

    Gutierrez-Arroyo, A.; Sanchez-Perez, C.; Aleman-Garcia, N.

    2013-06-01

    This paper presents the design of a heat flux sensor using an optical fiber system to measure heat conduction in biological tissues. This optoelectronic device is based on the photothermal beam deflection of a laser beam travelling in an acrylic slab this deflection is measured with a fiber optic angle sensor. We measure heat conduction in biological samples with high repeatability and sensitivity enough to detect differences in tissues from three chicken organs. This technique could provide important information of vital organ function as well as the detect modifications due to degenerative diseases or physical damage caused by medications or therapies.

  16. Image Distortion of Optical Coherence Tomography

    Institute of Scientific and Technical Information of China (English)

    安源; 姚建铨

    2004-01-01

    A kind of image distortion in Optical Coherence Tomography (OCT) resulted from average refractive index changes between structures of bio-tissue is discussed for the first time.Analysis is given on following situations:1) Exact refraction index changes between microstructures;2)The gradient of average refractive index change between different tissue layers is parallel to the probe beam;3) The gradient of average refractive index change is vertical to the probe beam.The results show that the image distortion of situation 1) is usually negligible;in situation 2) there is a spread or shrink effect without relative location error; however,in situation 3) there is a significant image error inducing relative location displacement between different structures.Preliminary design to eliminate the distortion is presented,the method of which mainly based on the image classification and pixel array re-arrangement.

  17. New Researches and Application Progress of Commonly Used Optical Molecular Imaging Technology

    Directory of Open Access Journals (Sweden)

    Zhi-Yi Chen

    2014-01-01

    Full Text Available Optical molecular imaging, a new medical imaging technique, is developed based on genomics, proteomics and modern optical imaging technique, characterized by non-invasiveness, non-radiativity, high cost-effectiveness, high resolution, high sensitivity and simple operation in comparison with conventional imaging modalities. Currently, it has become one of the most widely used molecular imaging techniques and has been applied in gene expression regulation and activity detection, biological development and cytological detection, drug research and development, pathogenesis research, pharmaceutical effect evaluation and therapeutic effect evaluation, and so forth, This paper will review the latest researches and application progresses of commonly used optical molecular imaging techniques such as bioluminescence imaging and fluorescence molecular imaging.

  18. Live imaging in Drosophila: The optical and genetic toolkits.

    Science.gov (United States)

    Rebollo, Elena; Karkali, Katerina; Mangione, Federica; Martín-Blanco, Enrique

    2014-06-15

    Biological imaging based on light microscopy comes at the core of the methods that let us understanding morphology and its dynamics in synergy to the spatiotemporal distribution of cellular and molecular activities as the organism develops and becomes functional. Non-linear optical tools and superesolution methodologies are under constant development and their applications to live imaging of whole organisms keep improving as we speak. Genetically coded biosensors, multicolor clonal methods and optogenetics in different organisms and, in particular, in Drosophila follow equivalent paths. We anticipate a brilliant future for live imaging providing the roots for the holistic understanding, rather than for individual parts, of development and function at the whole-organism level. PMID:24814031

  19. A review of imaging techniques for systems biology

    Directory of Open Access Journals (Sweden)

    Po Ming J

    2008-08-01

    Full Text Available Abstract This paper presents a review of imaging techniques and of their utility in system biology. During the last decade systems biology has matured into a distinct field and imaging has been increasingly used to enable the interplay of experimental and theoretical biology. In this review, we describe and compare the roles of microscopy, ultrasound, CT (Computed Tomography, MRI (Magnetic Resonance Imaging, PET (Positron Emission Tomography, and molecular probes such as quantum dots and nanoshells in systems biology. As a unified application area among these different imaging techniques, examples in cancer targeting are highlighted.

  20. Electro-optic imaging Fourier transform spectrometer

    Science.gov (United States)

    Chao, Tien-Hsin (Inventor); Znod, Hanying (Inventor)

    2009-01-01

    An Electro-Optic Imaging Fourier Transform Spectrometer (EOIFTS) for Hyperspectral Imaging is described. The EOIFTS includes an input polarizer, an output polarizer, and a plurality of birefringent phase elements. The relative orientations of the polarizers and birefringent phase elements can be changed mechanically or via a controller, using ferroelectric liquid crystals, to substantially measure the spectral Fourier components of light propagating through the EIOFTS. When achromatic switches are used as an integral part of the birefringent phase elements, the EIOFTS becomes suitable for broadband applications, with over 1 micron infrared bandwidth.

  1. Novel optical system for neonatal brain imaging

    Science.gov (United States)

    Chen, Yu; Zhou, Shuoming; Nioka, Shoko; Chance, Britton; Anday, Endla; Ravishankar, Sudha; Delivoria-Papadopoulos, Maria

    1999-03-01

    A highly portable, fast, safe and affordable imaging system that provides interpretable images of brain function in full- and pre-term neonates within a few seconds has been applied to neonates with normal and pathological states. We have used a uniquely sensitive optical tomography system, termed phased array, which has revealed significant functional responses, particularly to parietal stimulation in neonate brain. This system can indicate the blood concentration and oxygenation change during the parietal brain activation in full- and pre-term neonates. The preliminary clinical results, especially a longitudinal study of a cardiac arrest neonate, suggest a variety of future applications.

  2. 7th International Workshop on Advanced Optical Imaging and Metrology

    CERN Document Server

    2014-01-01

    In continuation of the FRINGE Workshop Series this Proceeding contains all contributions presented at the 7. International Workshop on Advanced Optical Imaging and Metrology. The FRINGE Workshop Series is dedicated to the presentation, discussion and dissemination of recent results in Optical Imaging and Metrology. Topics of particular interest for the 7. Workshop are: - New methods and tools for the generation, acquisition, processing, and evaluation of data in Optical Imaging and Metrology (digital wavefront engineering, computational imaging, model-based reconstruction, compressed sensing, inverse problems solution) - Application-driven technologies in Optical Imaging and Metrology (high-resolution, adaptive, active, robust, reliable, flexible, in-line, real-time) - High-dynamic range solutions in Optical Imaging and Metrology (from macro to nano) - Hybrid technologies in Optical Imaging and Metrology (hybrid optics, sensor and data fusion, model-based solutions, multimodality) - New optical sensors, imagi...

  3. Adaptive optics OCT using 1060nm swept source and dual deformable lenses for human retinal imaging

    Science.gov (United States)

    Jian, Yifan; Lee, Sujin; Cua, Michelle; Miao, Dongkai; Bonora, Stefano; Zawadzki, Robert J.; Sarunic, Marinko V.

    2016-03-01

    Adaptive optics concepts have been applied to the advancement of biological imaging and microscopy. In particular, AO has also been very successfully applied to cellular resolution imaging of the retina, enabling visualization of the characteristic mosaic patterns of the outer retinal layers using flood illumination fundus photography, Scanning Laser Ophthalmoscopy (SLO), and Optical Coherence Tomography (OCT). Despite the high quality of the in vivo images, there has been a limited uptake of AO imaging into the clinical environment. The high resolution afforded by AO comes at the price of limited field of view and specialized equipment. The implementation of a typical adaptive optics imaging system results in a relatively large and complex optical setup. The wavefront measurement is commonly performed using a Hartmann-Shack Wavefront Sensor (HS-WFS) placed at an image plane that is optically conjugated to the eye's pupil. The deformable mirror is also placed at a conjugate plane, relaying the wavefront corrections to the pupil. Due to the sensitivity of the HS-WFS to back-reflections, the imaging system is commonly constructed from spherical mirrors. In this project, we present a novel adaptive optics OCT retinal imaging system with significant potential to overcome many of the barriers to integration with a clinical environment. We describe in detail the implementation of a compact lens based wavefront sensorless adaptive optics (WSAO) 1060nm swept source OCT human retinal imaging system with dual deformable lenses, and present retinal images acquired in vivo from research volunteers.

  4. IOT Overview: Optical Spectro-Imagers

    Science.gov (United States)

    Patat, F.

    Taking the FORS instruments as a representative case, I review the Calibration Plan for optical spectro-imagers currently offered at ESO, discussing various aspects related both to the scientific outcome and the instrument/site monitoring. I also describe ongoing and future calibration projects planned by the Instrument Operations Teams, trying to give an objective view on the limitations of the Calibration Plans currently implemented at ESO for this class of instruments.

  5. Mono- and multimodal registration of optical breast images

    Science.gov (United States)

    Pearlman, Paul C.; Adams, Arthur; Elias, Sjoerd G.; Mali, Willem P. Th. M.; Viergever, Max A.; Pluim, Josien P. W.

    2012-08-01

    Optical breast imaging offers the possibility of noninvasive, low cost, and high sensitivity imaging of breast cancers. Poor spatial resolution and a lack of anatomical landmarks in optical images of the breast make interpretation difficult and motivate registration and fusion of these data with subsequent optical images and other breast imaging modalities. Methods used for registration and fusion of optical breast images are reviewed. Imaging concerns relevant to the registration problem are first highlighted, followed by a focus on both monomodal and multimodal registration of optical breast imaging. Where relevant, methods pertaining to other imaging modalities or imaged anatomies are presented. The multimodal registration discussion concerns digital x-ray mammography, ultrasound, magnetic resonance imaging, and positron emission tomography.

  6. Luminescent Silica Nanoparticles Featuring Collective Processes for Optical Imaging.

    Science.gov (United States)

    Rampazzo, Enrico; Prodi, Luca; Petrizza, Luca; Zaccheroni, Nelsi

    2016-01-01

    The field of nanoparticles has successfully merged with imaging to optimize contrast agents for many detection techniques. This combination has yielded highly positive results, especially in optical and magnetic imaging, leading to diagnostic methods that are now close to clinical use. Biological sciences have been taking advantage of luminescent labels for many years and the development of luminescent nanoprobes has helped definitively in making the crucial step forward in in vivo applications. To this end, suitable probes should present excitation and emission within the NIR region where tissues have minimal absorbance. Among several nanomaterials engineered with this aim, including noble metal, lanthanide, and carbon nanoparticles and quantum dots, we have focused our attention here on luminescent silica nanoparticles. Many interesting results have already been obtained with nanoparticles containing only one kind of photophysically active moiety. However, the presence of different emitting species in a single nanoparticle can lead to diverse properties including cooperative behaviours. We present here the state of the art in the field of silica luminescent nanoparticles exploiting collective processes to obtain ultra-bright units suitable as contrast agents in optical imaging and optical sensing and for other high sensitivity applications.

  7. Optical imaging of oral pathological tissue using optical coherence tomography and synchrotron radiation computed microtomography

    Science.gov (United States)

    Cânjǎu, Silvana; Todea, Carmen; Sinescu, Cosmin; Negrutiu, Meda L.; Duma, Virgil; Mǎnescu, Adrian; Topalǎ, Florin I.; Podoleanu, Adrian Gh.

    2013-06-01

    The efforts aimed at early diagnosis of oral cancer should be prioritized towards developing a new screening instrument, based on optical coherence tomography (OCT), to be used directly intraorally, able to perform a fast, real time, 3D and non-invasive diagnosis of oral malignancies. The first step in this direction would be to optimize the OCT image interpretation of oral tissues. Therefore we propose plastination as a tissue preparation method that better preserves three-dimensional structure for study by new optical imaging techniques. The OCT and the synchrotron radiation computed microtomography (micro-CT) were employed for tissue sample analyze. For validating the OCT results we used the gold standard diagnostic procedure for any suspicious lesion - histopathology. This is a preliminary study of comparing features provided by OCT and Micro-CT. In the conditions of the present study, OCT proves to be a highly promising imaging modality. The use of x-ray based topographic imaging of small biological samples has been limited by the low intrinsic x-ray absorption of non-mineralized tissue and the lack of established contrast agents. Plastination can be used to enhance optical imagies of oral soft tissue samples.

  8. Imaging Cutaneous T-Cell Lymphoma with Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Hans Christian Ring

    2012-07-01

    Full Text Available Aim: To investigate the presentation of a patch-stage cutaneous T-cell lymphoma (CTCL using optical coherence tomography (OCT. Methods: A patient with a patch caused by CTCL was photographed digitally, OCT-scanned and biopsied. A normal skin area adjacent to the patch was OCT-scanned for comparison, but not biopsied. The OCT image and the histological image were compared. Results: The OCT images illustrated a thickened and hyperreflective stratum corneum. OCT also demonstrated several elongated hyporeflective structures in the dermis. The largest structure was measured to have a width of 0.13 mm. A good immediate correlation was found between histology and OCT imaging of the sample. Conclusion: The aetiology of the elongated structures is thought to be lymphomatous infiltrates. Similar findings have been described in ocular lymphoma and may therefore be an important characteristic of cutaneous lymphoma. It may further be speculated that the differences in OCT images may reflect the biological behaviour of the infiltrate. This observation therefore suggests that OCT imaging may be a relevant tool for the in vivo investigation of mycosis fungoides and other CTCLs, but in order to verify these observed patterns in OCT imaging, further investigations will be required.

  9. Porphyrin-magnetite nanoconjugates for biological imaging

    LENUS (Irish Health Repository)

    Nowostawska, Malgorzata

    2011-04-08

    Abstract Background The use of silica coated magnetic nanoparticles as contrast agents has resulted in the production of highly stable, non-toxic solutions that can be manipulated via an external magnetic field. As a result, the interaction of these nanocomposites with cells is of vital importance in understanding their behaviour and biocompatibility. Here we report the preparation, characterisation and potential application of new "two-in-one" magnetic fluorescent nanocomposites composed of silica-coated magnetite nanoparticles covalently linked to a porphyrin moiety. Method The experiments were performed by administering porphyrin functionalised silica-coated magnetite nanoparticles to THP-1 cells, a human acute monocytic leukaemia cell line. Cells were cultured in RPMI 1640 medium with 25 mM HEPES supplemented with heat-inactivated foetal bovine serum (FBS). Results We have synthesised, characterised and analysed in vitro, a new multimodal (magnetic and fluorescent) porphyrin magnetic nanoparticle composite (PMNC). Initial co-incubation experiments performed with THP-1 macrophage cells were promising; however the PMNC photobleached under confocal microscopy study. β-mercaptoethanol (β-ME) was employed to counteract this problem and resulted not only in enhanced fluorescence emission, but also allowed for elongated imaging and increased exposure times of the PMNC in a cellular environment. Conclusion Our experiments have demonstrated that β-ME visibly enhances the emission intensity. No deleterious effects to the cells were witnessed upon co-incubation with β-ME alone and no increases in background fluorescence were recorded. These results should present an interest for further development of in vitro biological imaging techniques.

  10. Imaging Granulomatous Lesions with Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Christina Banzhaf

    2012-01-01

    Full Text Available Aim: To investigate and compare the presentation of granulomatous lesions in optical coherence tomography (OCT images and compare this to previous studies of nonmelanoma skin tumors. Methods: Two patients with granulomas, tophi and granuloma annulare (GA, respectively, were photographed digitally, OCT-scanned and biopsied in the said order. Normal skin was OCT-scanned for comparison, but not biopsied. The OCT images from each lesion were compared with their histologic images as well as with OCT images with similar characteristics obtained from nonmelanoma skin tumors. Results: The OCT images of the tophi showed hyperreflective, rounded cloud-like structures in dermis, their upper part sharply delineated by a hyporeflective fringe. The deeper areas appeared blurred. The crystalline structures were delineated by a hyporeflective fringe. OCT images of GA showed two different structures in dermis: a hyporeflective rounded one, and one that was lobulated and wing-like. Conclusion: Granulomatous tissue surrounding urate deposits appeared as a clear hyporeflective fringe surrounding a light, hyperreflective area. The urate crystals appeared as hyperreflective areas, shielding the deeper part of dermis, meaning OCT could only visualize the upper part of the lesions. The lobulated, wing-like structure in GA may resemble diffuse GA or a dense lymphocytic infiltrate as seen on histology. The rounded structure in GA may represent an actual granuloma or either diffuse GA or a dense lymphocytic infiltrate as described above. This case suggests that OCT images granulomatous tissue as absorbent, hyporeflective areas, and urate crystals appear as reflective areas, obscuring the underlying tissue. In GA a new image shape looking like a wing has been found. The frequency, specificity and sensitivity of this new pattern in OCT imaging will require further studies.

  11. Image transport through a disordered optical fiber mediated by transverse Anderson localization

    CERN Document Server

    Karbasi, Salman; Koch, Karl W; Hawkins, Thomas; Ballato, John; Mafi, Arash

    2013-01-01

    Transverse Anderson localization of light allows localized optical-beam-transport through a transversely-disordered and longitudinally-invariant medium. Its successful implementation in disordered optical fibers recently resulted in the simultaneous propagation of multiple beams in a single strand of an optical fiber, suggesting potential applications for spatial beam multiplexing and image transport. We present what is, to the best of our knowledge, the first demonstration of optical image transport using transverse Anderson localization of light. The image transport quality obtained in the polymer disordered optical fiber is comparable with or better than some of the best commercially available multicore imaging fibers with less pixelation and higher contrast. A proof-of-concept glass version is also evaluated and further optimization is discussed. Our results open the way to device-level implementation of the transverse Anderson localization of light with potential applications in biological and medical im...

  12. ESO Imaging survey: Optical Deep Public Survey

    CERN Document Server

    Mignano, A; Costa, L; Olsen, L F; Prandoni, I; Arnouts, S; Benoist, C; Dietrich, J P; Madejsky, R; Slijkhuis, R; Zaggia, S

    2006-01-01

    This paper presents new five passbands (UBVRI) optical wide-field imaging data accumulated as part of the DEEP Public Survey (DPS) carried out as a public survey by the ESO Imaging Survey (EIS) project. Out of the 3 square degrees originally proposed, the survey covers 2.75 square degrees, in at least one band (normally R), and 1.00 square degrees in five passbands. The median seeing, as measured in the final stacked images, is 0.97", ranging from 0.75" to 2.0". The median limiting magnitudes (AB system, 2" aperture, 5 sigma detection limit) are U_(AB)=25.65, B_(AB)=25.54, V_(AB)=25.18, R_(AB) = 24.8 and I_(AB)=24.12 mag, consistent with those proposed in the original survey design. The paper describes the observations and data reduction using the EIS Data Reduction System and its associated EIS/MVM library. The quality of the individual images were inspected, bad images discarded and the remaining used to produce final image stacks in each passband, from which sources have been extracted. Finally, the scient...

  13. RADIANCE AND PHOTON NOISE: Imaging in geometrical optics, physical optics, quantum optics and radiology

    Science.gov (United States)

    Barrett, Harrison H.; Myers, Kyle J.; Caucci, Luca

    2016-01-01

    A fundamental way of describing a photon-limited imaging system is in terms of a Poisson random process in spatial, angular and wavelength variables. The mean of this random process is the spectral radiance. The principle of conservation of radiance then allows a full characterization of the noise in the image (conditional on viewing a specified object). To elucidate these connections, we first review the definitions and basic properties of radiance as defined in terms of geometrical optics, radiology, physical optics and quantum optics. The propagation and conservation laws for radiance in each of these domains are reviewed. Then we distinguish four categories of imaging detectors that all respond in some way to the incident radiance, including the new category of photon-processing detectors. The relation between the radiance and the statistical properties of the detector output is discussed and related to task-based measures of image quality and the information content of a single detected photon.

  14. Volumetric imaging of fast biological dynamics in deep tissue via wavefront engineering

    Science.gov (United States)

    Kong, Lingjie; Tang, Jianyong; Cui, Meng

    2016-03-01

    To reveal fast biological dynamics in deep tissue, we combine two wavefront engineering methods that were developed in our laboratory, namely optical phase-locked ultrasound lens (OPLUL) based volumetric imaging and iterative multiphoton adaptive compensation technique (IMPACT). OPLUL is used to generate oscillating defocusing wavefront for fast axial scanning, and IMPACT is used to compensate the wavefront distortions for deep tissue imaging. We show its promising applications in neuroscience and immunology.

  15. Image Deblurring Using Derivative Compressed Sensing for Optical Imaging Application

    CERN Document Server

    Rostami, Mohammad; Wang, Zhou

    2011-01-01

    Reconstruction of multidimensional signals from the samples of their partial derivatives is known to be a standard problem in inverse theory. Such and similar problems routinely arise in numerous areas of applied sciences, including optical imaging, laser interferometry, computer vision, remote sensing and control. Though being ill-posed in nature, the above problem can be solved in a unique and stable manner, provided proper regularization and relevant boundary conditions. In this paper, however, a more challenging setup is addressed, in which one has to recover an image of interest from its noisy and blurry version, while the only information available about the imaging system at hand is the amplitude of the generalized pupil function (GPF) along with partial observations of the gradient of GPF's phase. In this case, the phase-related information is collected using a simplified version of the Shack-Hartmann interferometer, followed by recovering the entire phase by means of derivative compressed sensing. Su...

  16. Functional imaging in bulk tissue specimens using optical emission tomography: fluorescence preservation during optical clearing

    International Nuclear Information System (INIS)

    Optical emission computed tomography (optical-ECT) is a technique for imaging the three-dimensional (3D) distribution of fluorescent probes in biological tissue specimens with high contrast and spatial resolution. In optical-ECT, functional information can be imaged by (i) systemic application of functional labels (e.g. fluorophore labelled proteins) and/or (ii) endogenous expression of fluorescent reporter proteins (e.g. red fluorescent protein (RFP), green fluorescent protein (GFP)) in vivo. An essential prerequisite for optical-ECT is optical clearing, a procedure where tissue specimens are made transparent to light by sequential perfusion with fixing, dehydrating and clearing agents. In this study, we investigate clearing protocols involving a selection of common fixing (4% buffered paraformaldehyde (PFA), methanol and ethanol), dehydrating (methanol and ethanol) and clearing agents (methyl salicylate and benzyl-alcohol-benzyl-benzoate (BABB)) in order to determine a 'fluorescence friendly' clearing procedure. Cell culture experiments were employed to optimize the sequence of chemical treatments that best preserve fluorescence. Texas red (TxRed), fluorescein isothiocyanate (FITC), RFP and GFP were tested as fluorophores and fluorescent reporter proteins of interest. Fluorescent and control cells were imaged on a microscope using a DSred2 and FITC filter set. The most promising clearing protocols of cell culture experiments were applied to whole xenograft tumour specimens, to test their effectiveness in large unsectioned samples. Fluorescence of TxRed/FITC fluorophores was not found to be significantly affected by any of the test clearing protocols. RFP and GFP fluorescence, however, was found to be significantly greater when cell fixation was in ethanol. Fixation in either PFA or methanol resulted in diminished fluorescence. After ethanol fixation, the RFP and GFP fluorescence proved remarkably robust to subsequent exposure to either methyl salicylate or BABB

  17. Optical Methods and Instrumentation in Brain Imaging and Therapy

    CERN Document Server

    2013-01-01

    This book provides a comprehensive up-to-date review of optical approaches used in brain imaging and therapy. It covers a variety of imaging techniques including diffuse optical imaging, laser speckle imaging, photoacoustic imaging and optical coherence tomography. A number of laser-based therapeutic approaches are reviewed, including photodynamic therapy, fluorescence guided resection and photothermal therapy. Fundamental principles and instrumentation are discussed for each imaging and therapeutic technique. Represents the first publication dedicated solely to optical diagnostics and therapeutics in the brain Provides a comprehensive review of the principles of each imaging/therapeutic modality Reviews the latest advances in instrumentation for optical diagnostics in the brain Discusses new optical-based therapeutic approaches for brain diseases

  18. Nonlinear optical imaging: toward chemical imaging during neurosurgery

    Science.gov (United States)

    Meyer, Tobias; Dietzek, Benjamin; Krafft, Christoph; Romeike, Bernd F. M.; Reichart, Rupert; Kalff, Rolf; Popp, Jürgen

    2011-03-01

    Tumor recognition and precise tumor margin detection presents a central challenge during neurosurgery. In this contribution we present our recent all-optical approach to tackle this problem. We introduce various nonlinear optical techniques, such as coherent anti-Stokes Raman scattering (CARS), second-harmonic generation (SHG) and two-photon fluorescence (TPEF), to study the morphology and chemical composition of (ex vivo) brain tissue. As the experimental techniques presented are contact-free all-optical techniques, which do not rely on the administration of external (fluorescence) labels, we anticipate that their implementation into surgical microscopes will provide significant advantages of intraoperative tumor diagnosis. In this contribution an introduction to the different optical spectroscopic methods will be presented and their implementation into a multimodal microscopic setup will be discussed. Furthermore, we will exemplify their application to brain tissue, i.e. both pig brain as a model for healthy brain tissue and human brain samples taken from surgical procedures. The data to be discussed show the capability of a joint CARS/SHG/TPEF multimodal imaging approach in highlighting various aspects of tissue morphochemistry. The consequences of this microspectroscopic potential, when combined with the existing technology of surgical microscopes, will be discussed.

  19. Optical metabolic imaging for monitoring tracheal health

    Science.gov (United States)

    Sharick, Joe T.; Gil, Daniel A.; Choma, Michael A.; Skala, Melissa C.

    2016-04-01

    The health of the tracheal mucosa and submucosa is a vital yet poorly understood component of critical care medicine, and a minimally-invasive method is needed to monitor tracheal health in patients. Of particular interest are the ciliated cells of the tracheal epithelium that move mucus away from the lungs and prevent respiratory infection. Optical metabolic imaging (OMI) allows cellular-level measurement of metabolism, and is a compelling method for assessing tracheal health because ciliary motor proteins require ATP to function. In this pilot study, we apply multiphoton imaging of the fluorescence intensities and lifetimes of metabolic co-enzymes NAD(P)H and FAD to the mucosa and submucosa of ex vivo mouse trachea. We demonstrate the feasibility and potential diagnostic utility of these measurements for assessing tracheal health and pathophysiology at the single-cell level.

  20. A content-based image retrieval method for optical colonoscopy images based on image recognition techniques

    Science.gov (United States)

    Nosato, Hirokazu; Sakanashi, Hidenori; Takahashi, Eiichi; Murakawa, Masahiro

    2015-03-01

    This paper proposes a content-based image retrieval method for optical colonoscopy images that can find images similar to ones being diagnosed. Optical colonoscopy is a method of direct observation for colons and rectums to diagnose bowel diseases. It is the most common procedure for screening, surveillance and treatment. However, diagnostic accuracy for intractable inflammatory bowel diseases, such as ulcerative colitis (UC), is highly dependent on the experience and knowledge of the medical doctor, because there is considerable variety in the appearances of colonic mucosa within inflammations with UC. In order to solve this issue, this paper proposes a content-based image retrieval method based on image recognition techniques. The proposed retrieval method can find similar images from a database of images diagnosed as UC, and can potentially furnish the medical records associated with the retrieved images to assist the UC diagnosis. Within the proposed method, color histogram features and higher order local auto-correlation (HLAC) features are adopted to represent the color information and geometrical information of optical colonoscopy images, respectively. Moreover, considering various characteristics of UC colonoscopy images, such as vascular patterns and the roughness of the colonic mucosa, we also propose an image enhancement method to highlight the appearances of colonic mucosa in UC. In an experiment using 161 UC images from 32 patients, we demonstrate that our method improves the accuracy of retrieving similar UC images.

  1. Introduction: Feature Issue on Optical Imaging and Spectroscopy

    OpenAIRE

    Hielscher, Andreas H.; Mycek, Mary-Ann; Perelman, Lev T.

    2010-01-01

    The editors introduce the Biomedical Optics Express feature issue, “Optical Imaging and Spectroscopy,” which was a technical area at the 2010 Optical Society of America (OSA), Biomedical Optics (BIOMED) Topical Meeting held on 11–14 April in Miami, Florida. The feature issue includes 23 contributions from conference attendees.

  2. Introduction: Advances in Optical Coherence Tomography, Photoacoustic Imaging, and Microscopy

    OpenAIRE

    Li, X; Beard, P.C.; Georgakoudi, I.

    2010-01-01

    The editors introduce the Biomedical Optics Express feature issue, “Advances in Optical Coherence Tomography, Photoacoustic Imaging, and Microscopy,” which combines three technical areas from the 2010 Optical Society of America (OSA), Biomedical Optics (BIOMED) Topical Meeting held on 11–14 April in Miami, Florida, and includes contributions from conference attendees.

  3. RESEARCH ON IMAGE TRANSLATION BETWEEN SAR AND OPTICAL IMAGERY

    OpenAIRE

    Fu; Zhang,

    2012-01-01

    Compare to optical sensors, Synthetic Aperture Radar (SAR) sensors can work at all time and under all weather conditions. However, SAR images are less intuitive and more difficult to understand. To complement advantages of optical and SAR sensors, a technique of image translation is put forward. Firstly, the concept named as remote sensing image translation is presented, and a set of technology thinking for multi-source remote sensing image translation is also given. Image understand...

  4. Optical Coherence Tomography in Cancer Imaging

    Science.gov (United States)

    Nam, Ahhyun Stephanie; Vakoc, Benjamin; Blauvelt, David; Chico-Calero, Isabel

    Investigations into the biology of cancer and novel cancer therapies rely on preclinical mouse models and traditional histological endpoints. Drawbacks of this approach include a limit in the number of time points for evaluation and an increased number of animals per study. This has motivated the use of intravital microscopy, which can provide longitudinal imaging of critical tumor parameters. Here, the capabilities of OCT as an intravital microscopy of the tumor microenvironment are summarized, and the state of OCT adoption into cancer research is summarized.

  5. Finite-difference time-domain-based optical microscopy simulation of dispersive media facilitates the development of optical imaging techniques

    Science.gov (United States)

    Zhang, Di; Capoglu, Ilker; Li, Yue; Cherkezyan, Lusik; Chandler, John; Spicer, Graham; Subramanian, Hariharan; Taflove, Allen; Backman, Vadim

    2016-06-01

    Combining finite-difference time-domain (FDTD) methods and modeling of optical microscopy modalities, we previously developed an open-source software package called Angora, which is essentially a "microscope in a computer." However, the samples being simulated were limited to nondispersive media. Since media dispersions are common in biological samples (such as cells with staining and metallic biomarkers), we have further developed a module in Angora to simulate samples having complicated dispersion properties, thereby allowing the synthesis of microscope images of most biological samples. We first describe a method to integrate media dispersion into FDTD, and we validate the corresponding Angora dispersion module by applying Mie theory, as well as by experimentally imaging gold microspheres. Then, we demonstrate how Angora can facilitate the development of optical imaging techniques with a case study.

  6. Miniature probe integrating optical-resolution photoacoustic microscopy, optical coherence tomography, and ultrasound imaging: proof-of-concept.

    Science.gov (United States)

    Dai, Xianjin; Xi, Lei; Duan, Can; Yang, Hao; Xie, Huikai; Jiang, Huabei

    2015-06-15

    In this Letter, we present a novel tri-modal miniature side-view probe, through which optical-resolution photoacoustic microscopy (OR-PAM), optical coherence tomography (OCT), and pulse-echo ultrasound (US) images can be coaxially acquired and displayed simultaneously. The probe consists of a common optical path for OR-PAM (light delivery) and OCT (light delivery/detection), and a 40-MHz unfocused ultrasound transducer for OR-PAM (photoacoustic detection) and US (ultrasound transmission/receiving) with an overall diameter of 2 mm. Combining OR-PAM, OCT, and US would provide complementary information including optical absorption (OR-PAM), optical back-scattering (OCT), and deep tissue structures (US) about biological tissue. Based on an integrated imaging system consisting of OR-PAM, time-domain OCT, and US, phantom images and in vivo images of rat ear were acquired to demonstrate the capabilities of the integrated tri-modality imaging probe. The probe yields a lateral resolution of 13.6 μm for OR-PAM and OCT, and an axial resolution of 43 μm for OR-PAM and US. Currently, for a scanning area of 1 ×1  mm, it took ∼25  min to acquire data for tri-modal volumetric imaging. PMID:26076296

  7. Optical cryptography topology based on a three-dimensional particle-like distribution and diffractive imaging.

    Science.gov (United States)

    Chen, Wen; Chen, Xudong

    2011-05-01

    In recent years, coherent diffractive imaging has been considered as a promising alternative for information retrieval instead of conventional interference methods. Coherent diffractive imaging using the X-ray light source has opened up a new research perspective for the measurement of non-crystalline and biological specimens, and can achieve unprecedentedly high resolutions. In this paper, we show how a three-dimensional (3D) particle-like distribution and coherent diffractive imaging can be applied for a study of optical cryptography. An optical multiple-random-phase-mask encoding approach is used, and the plaintext is considered as a series of particles distributed in a 3D space. A topology concept is also introduced into the proposed optical cryptosystem. During image decryption, a retrieval algorithm is developed to extract the plaintext from the ciphertexts. In addition, security and advantages of the proposed optical cryptography topology are also analyzed.

  8. Experimental validation of a high-resolution diffuse optical imaging modality: photomagnetic imaging

    Science.gov (United States)

    Nouizi, Farouk; Luk, Alex; Thayer, Dave; Lin, Yuting; Ha, Seunghoon; Gulsen, Gultekin

    2016-01-01

    We present experimental results that validate our imaging technique termed photomagnetic imaging (PMI). PMI illuminates the medium under investigation with a near-infrared light and measures the induced temperature increase using magnetic resonance imaging. A multiphysics solver combining light and heat propagation is used to model spatiotemporal distribution of temperature increase. Furthermore, a dedicated PMI reconstruction algorithm has been developed to reveal high-resolution optical absorption maps from temperature measurements. Being able to perform measurements at any point within the medium, PMI overcomes the limitations of conventional diffuse optical imaging. We present experimental results obtained on agarose phantoms mimicking biological tissue with inclusions having either different sizes or absorption contrasts, located at various depths. The reconstructed images show that PMI can successfully resolve these inclusions with high resolution and recover their absorption coefficient with high-quantitative accuracy. Even a 1-mm inclusion located 6-mm deep is recovered successfully and its absorption coefficient is underestimated by only 32%. The improved PMI system presented here successfully operates under the maximum skin exposure limits defined by the American National Standards Institute, which opens up the exciting possibility of its future clinical use for diagnostic purposes.

  9. Applications of non-imaging micro-optic systems

    OpenAIRE

    Baker, Katherine Anne

    2012-01-01

    While imaging optics necessarily transmit a clear image of an object, non-imaging optics manipulate light in many different ways. Two important applications are illumination and concentration. In this thesis, I cover an application in each of these areas involving small-scale optics. Extremely low birth weight infants typically require intubation, but existing laryngoscopes for viewing the airway are not suited to this population. Small commercial cameras can fit within the required geometry,...

  10. MEMS scanner enabled real-time depth sensitive hyperspectral imaging of biological tissue.

    Science.gov (United States)

    Wang, Youmin; Bish, Sheldon; Tunnell, James W; Zhang, Xiaojing

    2010-11-01

    We demonstrate a hyperspectral and depth sensitive diffuse optical imaging microsystem, where fast scanning is provided by a CMOS compatible 2-axis MEMS mirror. By using lissajous scanning patterns, large field-of-view (FOV) of 1.2 cmx1.2 cm images with lateral resolution of 100 µm can be taken at 1.3 frames-per-second (fps). Hyperspectral and depth-sensitive images were acquired on tissue simulating phantom samples containing quantum dots (QDs) patterned at various depths in Polydimethylsiloxane (PDMS). Device performance delivers 6 nm spectral resolution and 0.43 wavelengths per second acquisition speed. A sample of porcine epithelium with subcutaneously placed QDs was also imaged. Images of the biological sample were processed by spectral unmixing in order to qualitatively separate chromophores in the final images and demonstrate spectral performance of the imaging system. PMID:21164757

  11. Anterior Eye Imaging with Optical Coherence Tomography

    Science.gov (United States)

    Huang, David; Li, Yan; Tang, Maolong

    The development of corneal and anterior segment optical coherence tomography (OCT) technology has advanced rapidly in recently years. The scan geometry and imaging wavelength are both important choices to make in designing anterior segment OCT systems. Rectangular scan geometry offers the least image distortion and is now used in most anterior OCT systems. The wavelength of OCT light source affects resolution and penetration. An optimal choice of the OCT imaging wavelength (840, 1,050, or 1,310 nm) depends on the application of interest. Newer generation Fourier-domain OCT technology can provide scan speed 100-1000 times faster than the time-domain technology. Various commercial anterior OCT systems are available on the market. A wide spectrum of diagnostic and surgical applications using anterior segment OCT had been investigated, including mapping of corneal and epithelial thicknesses, keratoconus screening, measuring corneal refractive power, corneal surgery planning and evaluation in LASIK, intracorneal ring implantation, assessment of angle closure glaucoma, anterior chamber biometry and intraocular lens implants, intraocular lens power calculation, and eye bank donor cornea screening.

  12. Image restoration of the open-loop adaptive optics retinal imaging system based on optical transfer function analysis

    Science.gov (United States)

    Yu, Lei; Qi, Yue; Li, Dayu; Xia, Mingliang; Xuan, Li

    2013-07-01

    The residual aberrations of the adaptive optics retinal imaging system will decrease the quality of the retinal images. To overcome this obstacle, we found that the optical transfer function (OTF) of the adaptive optics retinal imaging system can be described as the Levy stable distribution. Then a new method is introduced to estimate the OTF of the open-loop adaptive optics system, based on analyzing the residual aberrations of the open-loop adaptive optics system in the residual aberrations measuring mode. At last, the estimated OTF is applied to restore the retinal images of the open-loop adaptive optics retinal imaging system. The contrast and resolution of the restored image is significantly improved with the Laplacian sum (LS) from 0.0785 to 0.1480 and gray mean grads (GMG) from 0.0165 to 0.0306.

  13. Molecular imaging by optically-detected electron spin resonance of nitrogen-vacancies in nanodiamond

    CERN Document Server

    Hegyi, Alex

    2012-01-01

    Molecular imaging refers to a class of noninvasive biomedical imaging techniques with the sensitivity and specificity to image biochemical variations in-vivo. An ideal molecular imaging technique visualizes a biochemical target according to a range of criteria, including high spatial and temporal resolution, high contrast relative to non-targeted tissues, depth-independent penetration into tissue, lack of harm to the organism under study, and low cost. Because no existing molecular imaging modality is ideal for all purposes, new imaging approaches are needed. Here we demonstrate a novel molecular imaging approach, called nanodiamond imaging, that uses nanodiamonds containing nitrogen-vacancy (NV) color centers as an imaging agent, and image nanodiamond targets in pieces of chicken breast. Nanodiamonds can be tagged with biologically active molecules so they bind to specific receptors; their distribution can then be quantified in-vivo via optically-detected magnetic resonance of the NVs. In effect, we are demo...

  14. Nonlinear optical methods for cellular imaging and localization.

    Science.gov (United States)

    McVey, A; Crain, J

    2014-07-01

    Of all the ways in which complex materials (including many biological systems) can be explored, imaging is perhaps the most powerful because delivering high information content directly. This is particular relevant in aspects of cellular localization where the physical proximity of molecules is crucial in biochemical processes. A great deal of effort in imaging has been spent on enabling chemically selective imaging so that only specific features are revealed. This is almost always achieved by adding fluorescent chemical labels to specific molecules. Under appropriate illumination conditions only the molecules (via their labels) will be visible. The technique is simple and elegant but does suffer from fundamental limitations: (1) the fluorescent labels may fade when illuminated (a phenomenon called photobleaching) thereby constantly decreasing signal contrast over the course of image acquisition. To combat photobleaching one must reduce observation times or apply unfavourably low excitation levels all of which reduce the information content of images; (2) the fluorescent species may be deactivated by various environmental factors (the general term is fluorescence quenching); (3) the presence of fluorescent labels may introduce unexpected complications or may interfere with processes of interest (4) Some molecules of interest cannot be labelled. In these circumstances we require a fundamentally different strategy. One of the most promising alternative is based on a technique called Coherent Anti-Stokes Raman scattering (CARS). CARS is a fundamentally more complex process than is fluorescence and the experimental procedures and optical systems required to deliver high quality CARS images are intricate. However, the rewards are correspondingly very high: CARS probes the chemically distinct vibrations of the constituent molecules in a complex system and is therefore also chemically selective as are fluorescence-based methods. Moreover,the potentially severe problems of

  15. Reconstruction of Optical Thickness from Hoffman Modulation Contrast Images

    DEFF Research Database (Denmark)

    Olsen, Niels Holm; Sporring, Jon; Nielsen, Mads;

    2003-01-01

    Hoffman microscopy imaging systems are part of numerous fertility clinics world-wide. We discuss the physics of the Hoffman imaging system from optical thickness to image intensity, implement a simple, yet fast, reconstruction algorithm using Fast Fourier Transformation and discuss the usability...... of the method on a number of cells from a human embryo. Novelty is identifying the non-linearity of a typical Hoffman imaging system, and the application of Fourier Transformation to reconstruct the optical thickness....

  16. Numerical modelling and image reconstruction in diffuse optical tomography

    OpenAIRE

    Dehghani, Hamid; Srinivasan, Subhadra; Pogue, Brian W.; Gibson, Adam

    2009-01-01

    The development of diffuse optical tomography as a functional imaging modality has relied largely on the use of model-based image reconstruction. The recovery of optical parameters from boundary measurements of light propagation within tissue is inherently a difficult one, because the problem is nonlinear, ill-posed and ill-conditioned. Additionally, although the measured near-infrared signals of light transmission through tissue provide high imaging contrast, the reconstructed images suffer ...

  17. Strategies for Biologic Image-Guided Dose Escalation: A Review

    International Nuclear Information System (INIS)

    There is increasing interest in how to incorporate functional and molecular information obtained by noninvasive, three-dimensional tumor imaging into radiotherapy. The key issues are to identify radioresistant regions that can be targeted for dose escalation, and to develop radiation dose prescription and delivery strategies providing optimal treatment for the individual patient. In the present work, we review the proposed strategies for biologic image-guided dose escalation with intensity-modulated radiation therapy. Biologic imaging modalities and the derived images are discussed, as are methods for target volume delineation. Different dose escalation strategies and techniques for treatment delivery and treatment plan evaluation are also addressed. Furthermore, we consider the need for response monitoring during treatment. We conclude with a summary of the current status of biologic image-based dose escalation and of areas where further work is needed for this strategy to become incorporated into clinical practice

  18. Changing image of correlation optics: introduction

    DEFF Research Database (Denmark)

    Angelsky, Oleg V.; Desyatnikov, Anton S.; Gbur, Gregory J.;

    2016-01-01

    This feature issue of Applied Optics contains a series of selected papers reflecting recent progress of correlation optics and illustrating current trends in vector singular optics, internal energy flows at light fields, optical science of materials, and new biomedical applications of lasers. (C......) 2016 Optical Society of America...

  19. Can preoperative MR imaging predict optic nerve invasion of retinoblastoma?

    Energy Technology Data Exchange (ETDEWEB)

    Song, Kyoung Doo, E-mail: kdsong0308@gmail.com [Department of Radiology and Center for Imaging Science, Samsung Medical Center, Sungkyunkwan University School of Medicine, 50, Ilwon-Dong, Kangnam-Ku, Seoul 135-710 (Korea, Republic of); Eo, Hong, E-mail: rtombow@gmail.com [Department of Radiology and Center for Imaging Science, Samsung Medical Center, Sungkyunkwan University School of Medicine, 50, Ilwon-Dong, Kangnam-Ku, Seoul 135-710 (Korea, Republic of); Kim, Ji Hye, E-mail: jhkate.kim@samsung.com [Department of Radiology and Center for Imaging Science, Samsung Medical Center, Sungkyunkwan University School of Medicine, 50, Ilwon-Dong, Kangnam-Ku, Seoul 135-710 (Korea, Republic of); Yoo, So-Young, E-mail: sy1131.yoo@samsung.com [Department of Radiology and Center for Imaging Science, Samsung Medical Center, Sungkyunkwan University School of Medicine, 50, Ilwon-Dong, Kangnam-Ku, Seoul 135-710 (Korea, Republic of); Jeon, Tae Yeon, E-mail: hathor97.jeon@samsung.com [Department of Radiology and Center for Imaging Science, Samsung Medical Center, Sungkyunkwan University School of Medicine, 50, Ilwon-Dong, Kangnam-Ku, Seoul 135-710 (Korea, Republic of)

    2012-12-15

    Purpose: To evaluate the accuracy of pre-operative MRI for the detection of optic nerve invasion in retinoblastoma. Materials and methods: Institutional review board approval and informed consent were waived for this retrospective study. A total of 41 patients were included. Inclusion criteria were histologically proven retinoblastoma, availability of diagnostic-quality preoperative MR images acquired during the 4 weeks before surgery, unilateral retinoblastoma, and normal-sized optic nerve. Two radiologists retrospectively reviewed the MR images independently. Five imaging findings (diffuse mild optic nerve enhancement, focal strong optic nerve enhancement, optic sheath enhancement, tumor location, and tumor size) were evaluated against optic nerve invasion of retinoblastoma. The predictive performance of all MR imaging findings for optic nerve invasion was also evaluated by the receiver operating characteristic curve analysis. Results: Optic nerve invasion was histopathologically confirmed in 24% of study population (10/41). The differences in diffuse mild enhancement, focal strong enhancement, optic sheath enhancement, and tumor location between patients with optic nerve invasion and patients without optic nerve invasion were not significant. Tumor sizes were 16.1 mm (SD: 2.2 mm) and 14.9 mm (SD: 3.6 mm) in patients with and without optic nerve involvement, respectively (P = 0.444). P-Values from binary logistic regression indicated that all five imaging findings were not significant predictors of tumor invasion of optic nerve. The AUC values of all MR imaging findings for the prediction of optic nerve invasion were 0.689 (95% confidence interval: 0.499–0.879) and 0.653 (95% confidence interval: 0.445–0.861) for observer 1 and observer 2, respectively. Conclusion: Findings of MRI in patients with normal-sized optic nerves have limited usefulness in preoperatively predicting the presence of optic nerve invasion in retinoblastoma.

  20. Advances in the Simultaneous Multiple Surface optical design method for imaging and non-imaging applications

    OpenAIRE

    Wang, Lin

    2012-01-01

    Classical imaging optics has been developed over centuries in many areas, such as its paraxial imaging theory and practical design methods like multi-parametric optimization techniques. Although these imaging optical design methods can provide elegant solutions to many traditional optical problems, there are more and more new design problems, like solar concentrator, illumination system, ultra-compact camera, etc., that require maximum energy transfer efficiency, or ultra-compact optical stru...

  1. Hybrid micro-/nanogels for optical sensing and intracellular imaging

    Directory of Open Access Journals (Sweden)

    Shuiqin Zhou

    2010-12-01

    Full Text Available Hybrid micro-/nanogels are playing an increasing important part in a diverse range of applications, due to their tunable dimensions, large surface area, stable interior network structure, and a very short response time. We review recent advances and challenges in the developments of hybrid micro-/nanogels toward applications for optical sensing of pH, temperature, glucose, ions, and other species as well as for intracellular imaging. Due to their unique advantages, hybrid micro-/nanogels as optical probes are attracting substantial interests for continuous monitoring of chemical parameters in complex samples such as blood and bioreactor fluids, in chemical research and industry, and in food quality control. In particular, their intracellular probing ability enables the monitoring of the biochemistry and biophysics of live cells over time and space, thus contributing to the explanation of intricate biological processes and the development of novel diagnoses. Unlike most other probes, hybrid micro-/nanogels could also combine other multiple functions into a single probe. The rational design of hybrid micro-/nanogels will not only improve the probing applications as desirable, but also implement their applications in new arenas. With ongoing rapid advances in bionanotechnology, the well-designed hybrid micro-/nanogel probes will be able to provide simultaneous sensing, imaging diagnosis, and therapy toward clinical applications.

  2. Optical coherence tomography: imaging architect for dermal microdialysis in psoriasis

    Science.gov (United States)

    O'Connell, M.-L.; O'Connor, W.; Ramsay, B.; Guihen, E.; Ho, W. L.; Leahy, M. J.

    2011-03-01

    Optical coherence tomography (OCT) has been used as part of a ground breaking translational study to shed some light on one of the worlds most prevalent autoimmune diseases; psoriasis. The work successfully integrates the fields of optical imaging, biochemistry and dermatology in conducting a dermal microdialysis (DMD) trial for quantitative histamine assessment amongst a group of psoriasis sufferers. The DMD process involves temporary insertion of microscopic hollow tubes into a layer of skin to measure the levels of histamine and other important biological molecules in psoriasis. For comparison purposes, DMD catheters were implanted into healthy, peri-lesional and lesional skin regions. The catheters' entry and exit points and their precise locations in the epidermal layer of the skin were confirmed using OCT thus obtaining high resolution, wide-field images of the affected skin as well as catheter placement whilst local microdialysis enabled a tissue chemistry profile to be obtained from these three skin regions including histamine, a local immune system activator known to contribute towards itch and inflammation. Together these tools offer a synergistic approach in the clinical assessment of the disease. In addition, OCT delivered a non-invasive and rapid method for analyzing the affected skin architecture.

  3. Novel spirometry based on optical surface imaging

    Energy Technology Data Exchange (ETDEWEB)

    Li, Guang, E-mail: lig2@mskcc.org; Huang, Hailiang; Li, Diana G.; Chen, Qing; Gaebler, Carl P.; Mechalakos, James [Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, New York 10065 (United States); Wei, Jie [Department of Computer Science, City College of New York, New York, New York 10031 (United States); Sullivan, James [Pulmonary Laboratories, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York 10065 (United States); Zatcky, Joan; Rimner, Andreas [Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, New York 10065 (United States)

    2015-04-15

    Purpose: To evaluate the feasibility of using optical surface imaging (OSI) to measure the dynamic tidal volume (TV) of the human torso during free breathing. Methods: We performed experiments to measure volume or volume change in geometric and deformable phantoms as well as human subjects using OSI. To assess the accuracy of OSI in volume determination, we performed experiments using five geometric phantoms and two deformable body phantoms and compared the values with those derived from geometric calculations and computed tomography (CT) measurements, respectively. To apply this technique to human subjects, an institutional review board protocol was established and three healthy volunteers were studied. In the human experiment, a high-speed image capture mode of OSI was applied to acquire torso images at 4–5 frames per second, which was synchronized with conventional spirometric measurements at 5 Hz. An in-house MATLAB program was developed to interactively define the volume of interest (VOI), separate the thorax and abdomen, and automatically calculate the thoracic and abdominal volumes within the VOIs. The torso volume change (TV C = ΔV{sub torso} = ΔV{sub thorax} + ΔV{sub abdomen}) was automatically calculated using full-exhalation phase as the reference. The volumetric breathing pattern (BP{sub v} = ΔV{sub thorax}/ΔV{sub torso}) quantifying thoracic and abdominal volume variations was also calculated. Under quiet breathing, TVC should equal the tidal volume measured concurrently by a spirometer with a conversion factor (1.08) accounting for internal and external differences of temperature and moisture. Another MATLAB program was implemented to control the conventional spirometer that was used as the standard. Results: The volumes measured from the OSI imaging of geometric phantoms agreed with the calculated volumes with a discrepancy of 0.0% ± 1.6% (range −1.9% to 2.5%). In measurements from the deformable torso/thorax phantoms, the volume

  4. Novel spirometry based on optical surface imaging

    International Nuclear Information System (INIS)

    Purpose: To evaluate the feasibility of using optical surface imaging (OSI) to measure the dynamic tidal volume (TV) of the human torso during free breathing. Methods: We performed experiments to measure volume or volume change in geometric and deformable phantoms as well as human subjects using OSI. To assess the accuracy of OSI in volume determination, we performed experiments using five geometric phantoms and two deformable body phantoms and compared the values with those derived from geometric calculations and computed tomography (CT) measurements, respectively. To apply this technique to human subjects, an institutional review board protocol was established and three healthy volunteers were studied. In the human experiment, a high-speed image capture mode of OSI was applied to acquire torso images at 4–5 frames per second, which was synchronized with conventional spirometric measurements at 5 Hz. An in-house MATLAB program was developed to interactively define the volume of interest (VOI), separate the thorax and abdomen, and automatically calculate the thoracic and abdominal volumes within the VOIs. The torso volume change (TV C = ΔVtorso = ΔVthorax + ΔVabdomen) was automatically calculated using full-exhalation phase as the reference. The volumetric breathing pattern (BPv = ΔVthorax/ΔVtorso) quantifying thoracic and abdominal volume variations was also calculated. Under quiet breathing, TVC should equal the tidal volume measured concurrently by a spirometer with a conversion factor (1.08) accounting for internal and external differences of temperature and moisture. Another MATLAB program was implemented to control the conventional spirometer that was used as the standard. Results: The volumes measured from the OSI imaging of geometric phantoms agreed with the calculated volumes with a discrepancy of 0.0% ± 1.6% (range −1.9% to 2.5%). In measurements from the deformable torso/thorax phantoms, the volume differences measured using OSI imaging and CT

  5. THz imaging of majolica tiles and biological attached marble fragments

    Science.gov (United States)

    Catapano, Ilaria; Soldovieri, Francesco

    2016-04-01

    Devices exploiting waves in the frequency range from 0.1 THz to 10 THz (corresponding to a free-space wavelength ranging from 30 μm to 3 mm) deserve attention as diagnostic technologies for cultural heritage. THz waves are, indeed, non-ionizing radiations capable of penetrating into non-metallic materials, which are opaque to both visible and infrared waves, without implying long term risks to the molecular stability of the exposed objects and humans. Moreover, THz surveys involve low poewr probing waves, are performed without contact with the object and, thanks to the recent developments, which have allowed the commercialization of compact, flexible and portable systems, maybe performed in loco (i.e. in the place where the artworks are usually located). On the other hand, THz devices can be considered as the youngest among the sensing and imaging electromagnetic techniques and their actual potentialities in terms of characterization of artworks is an ongoing research activity. As a contribution within this context, we have performed time of flight THz imaging [1,2] on ceramic and marble objects. In particular, we surveyed majolica tiles produced by Neapolitan ceramists in the 18th and 19th centuries with the aim to gather information on their structure, constructive technique and conservation state. Moreover, we investigated a Marmo di Candoglia fragment in order to characterize the biological attach affecting it. All the surveys were carried out by using the Fiber-Coupled Terahertz Time Domain System (FICO) developed by Z-Omega and available at the Institute of Electromagnetic Sensing of the Environment (IREA). This system is equipped with fiber optic coupled transmitting and receiving probes and with an automatic positioning system enabling to scan a 150 mm x 150 mm area under a reflection measurement configuration. Based on the obtained results we can state that the use of THz waves allows: - the reconstruction of the object topography; - the geometrical

  6. Parallel optical sorting of biological cells using the generalized phase contrast method

    DEFF Research Database (Denmark)

    Rindorf, Lars; Bu, Minqiang; Glückstad, Jesper

    2014-01-01

    Optical forces are used to fixate biological cells with optical tweezers where numerous biological parameters and phenomena can be studied. Optical beams carry a small momentum which generates a weak optical force, but on a cellular level this force is strong enough to allow for manipulation...... of biological cells in microfluidic systems exclusively using light. We demonstrate an optical cell sorter that uses simultaneous manipulation by multiple laser beams using the Generalized Phase Contrast method (GPC). The basic principle in an optical sorter is that the radiation force of the optical beam can...

  7. Wavefront sensorless adaptive optics optical coherence tomography for in vivo retinal imaging in mice

    OpenAIRE

    Jian, Yifan; Xu, Jing; Gradowski, Martin A.; Bonora, Stefano; Zawadzki, Robert J.; Sarunic, Marinko V.

    2014-01-01

    We present wavefront sensorless adaptive optics (WSAO) Fourier domain optical coherence tomography (FD-OCT) for in vivo small animal retinal imaging. WSAO is attractive especially for mouse retinal imaging because it simplifies optical design and eliminates the need for wavefront sensing, which is difficult in the small animal eye. GPU accelerated processing of the OCT data permitted real-time extraction of image quality metrics (intensity) for arbitrarily selected retinal layers to be optimi...

  8. Optical force on diseased blood cells: Towards the optical sorting of biological matter

    KAUST Repository

    Gongora, Juan Sebastian Totero

    2015-05-01

    By employing a series of massively parallel ab-initio simulations, we study how optical forces act on biological matter subject to morphological disease. As a representative case study, we here consider the case of Plasmodium falciparum on red blood cells (RBC) illuminated by a monochromatic plane wave. Realistic parameters for the geometry and the refractive index are then taken from published experiments. In our theoretical campaign, we study the dependence of the optical force on the disease stage for different incident wavelengths. We show that optical forces change significantly with the disease, with amplitude variation in the hundreds of pN range. Our results open up new avenues for the design of new optical systems for the treatment of human disease. © 2015 Elsevier Ltd.

  9. Optical force on diseased blood cells: towards the optical sorting of biological matter

    CERN Document Server

    Gongora, Juan Sebastian Totero

    2016-01-01

    By employing a series of massively parallel ab-initio simulations, we study how optical forces act on biological matter subject to morphological disease. As a representative case study, we here consider the case of Plasmodium Falciparum on red blood cells (RBC) illuminated by a monochromatic plane wave. Realistic parameters for the geometry and the refractive index are then taken from published experiments. In our theoretical campaign, we study the dependence of the optical force on the disease stage for different incident wavelengths. We show that optical forces change significantly with the disease, with amplitude variation in the hundreds of pN range. Our results open up new avenues for the design of new optical systems for the treatment of human disease.

  10. Scintillating optical fibers in detection of X synchrotron radiation images

    International Nuclear Information System (INIS)

    It is pointed out how the use of optical fiber matrices (or alluminated optical guides) of scintillating glass can constitute systems of X image detection with energy higher than 2 KeV, with high efficiency, high spatial resolution and an acquisition capability dependent on the X flux, in the formation of the single images

  11. Analytical model and optical design of distributed aperture optical system for millimeter-wave imaging

    Science.gov (United States)

    Chen, Caihua; Schuetz, Christopher A.; Martin, Richard D.; Samluk, Jesse; Stein, E. Lee, Jr.; MacKrides, Daniel G.; Mirotznik, Mark; Prather, Dennis W.

    2008-10-01

    Millimeter-wave imaging is very interesting due to its unique transmission properties through a broad range of atmospheric obscurants such as cloud, dust, fog, sandstorms, and smoke, which thereby enables all-weather passive imaging. Unfortunately, the usefulness of millimeter-wave imagers is often limited by the large aperture sizes required to obtain images of sufficient resolution, as governed by the diffraction limit. To this end, we previously proposed a distributed aperture system for direct non-scan millimeter-wave imaging using an optical upconversion technique. In this proposed approach, an antenna array is employed to sample image signals in the millimeter-wave domain. The sampled millimeter-wave signals are then upconverted to the optical domain using electro-optic modulation techniques. These optical signals are mapped into a similar array on the entrance pupil of the following optical system for direct imaging. Although distributed aperture imaging is not new in both radio astronomy and conventional optical inteferometric imaging, the proposed approach is different in that it physically samples image in the millimeter-wave domain and directly forms the image in the optical domain. Therefore, specific analysis and evaluation techniques are required for the design and optimization of the proposed system. In this paper, we will address these issues, develop techniques to evaluate and enhance the system imaging performance and present methods to optimize the geometric configuration.

  12. Novel optical scanning cryptography using Fresnel telescope imaging.

    Science.gov (United States)

    Yan, Aimin; Sun, Jianfeng; Hu, Zhijuan; Zhang, Jingtao; Liu, Liren

    2015-07-13

    We propose a new method called modified optical scanning cryptography using Fresnel telescope imaging technique for encryption and decryption of remote objects. An image or object can be optically encrypted on the fly by Fresnel telescope scanning system together with an encryption key. For image decryption, the encrypted signals are received and processed with an optical coherent heterodyne detection system. The proposed method has strong performance through use of secure Fresnel telescope scanning with orthogonal polarized beams and efficient all-optical information processing. The validity of the proposed method is demonstrated by numerical simulations and experimental results.

  13. Optical authentication via photon-synthesized ghost imaging using optical nonlinear correlation

    Science.gov (United States)

    Chen, Wen; Chen, Xudong

    2015-10-01

    We present a method for optical authentication via photon-synthesized ghost imaging using optical nonlinear correlation. In ghost imaging, multiple series of photons recorded at the object beam arm can be arbitrarily controlled for the generation of synthesized objects. Ghost imaging with sparse reference intensity patterns provides a channel to effectively modulate the noise-like synthesized objects during the recovery, and the reconstructed (noise-like) objects, i.e., added or subtracted information, can be further authenticated by optical nonlinear correlation algorithm. It is expected that the proposed method can provide an effective and promising alternative for ghost-imaging-based optical processing.

  14. Document Indexing for Image-Based Optical Information Systems.

    Science.gov (United States)

    Thiel, Thomas J.; And Others

    1991-01-01

    Discussion of image-based information retrieval systems focuses on indexing. Highlights include computerized information retrieval; multimedia optical systems; optical mass storage and personal computers; and a case study that describes an optical disk system which was developed to preserve, access, and disseminate military documents. (19…

  15. Understanding the optics to aid microscopy image segmentation.

    Science.gov (United States)

    Yin, Zhaozheng; Li, Kang; Kanade, Takeo; Chen, Mei

    2010-01-01

    Image segmentation is essential for many automated microscopy image analysis systems. Rather than treating microscopy images as general natural images and rushing into the image processing warehouse for solutions, we propose to study a microscope's optical properties to model its image formation process first using phase contrast microscopy as an exemplar. It turns out that the phase contrast imaging system can be relatively well explained by a linear imaging model. Using this model, we formulate a quadratic optimization function with sparseness and smoothness regularizations to restore the "authentic" phase contrast images that directly correspond to specimen's optical path length without phase contrast artifacts such as halo and shade-off. With artifacts removed, high quality segmentation can be achieved by simply thresholding the restored images. The imaging model and restoration method are quantitatively evaluated on two sequences with thousands of cells captured over several days. PMID:20879233

  16. Janus particles for biological imaging and sensing.

    Science.gov (United States)

    Yi, Yi; Sanchez, Lucero; Gao, Yuan; Yu, Yan

    2016-06-21

    Janus particles, named after the two-faced Roman god Janus, have different surface makeups, structures or compartments on two sides. This review highlights recent advances in employing Janus particles as novel analytical tools for live cell imaging and biosensing. Unlike conventional particles used in analytical science, two-faced Janus particles provide asymmetry and directionality, and can combine different or even incompatible properties within a single particle. The broken symmetry enables imaging and quantification of rotational dynamics, revealing information beyond what traditional measurements offer. The spatial segregation of molecules on the surface of a single particle also allows analytical functions that would otherwise interfere with each other to be decoupled, opening up opportunities for novel multimodal analytical methods. We summarize here the development of Janus particles, a few general methods for their fabrication and, more importantly, the emerging and novel applications of Janus particles as multi-functional imaging probes and sensors. PMID:27052001

  17. Hybrid Deconvolution of Adaptive Optics Retinal Images from Wavefront Sensing

    Institute of Scientific and Technical Information of China (English)

    TIAN Yu; RAO Chang-Hui; RAO Xue-Jun; WANG Cheng; YU Xiang; LIU Qian; XUE Li-Xia; LING Ning; JIANG Wen-Han

    2008-01-01

    Adaptive optics can be used to compensate for the wave aberration of the human eyes to achieve high-resolution imaging in real time.However the correction is partial due to the limitation of hardware.We propose a kind of hybrid image post-processing method.which uses the blind deconvolution combined with the residual data in wavefront sensor to restore the partially adaptive optics corrected retinal image.This method is applied in the image restoration of the vivid human retinal images.The results show that it is effective to improve the retinal image quality.

  18. Hybrid Deconvolution of Adaptive Optics Retinal Images from Wavefront Sensing

    International Nuclear Information System (INIS)

    Adaptive optics can be used to compensate for the wave aberration of the human eyes to achieve high-resolution imaging in real time. However the correction is partial due to the limitation of hardware. We propose a kind of hybrid image post-processing method, which uses the blind deconvolution combined with the residual data in wavefront sensor to restore the partially adaptive optics corrected retinal image. This method is applied in the image restoration of the vivid human retinal images. The results show that it is effective to improve the retinal image quality

  19. Molecular Imaging Probes for Positron Emission Tomography and Optical Imaging of Sentinel Lymph Node and Tumor

    Science.gov (United States)

    Qin, Zhengtao

    Molecular imaging is visualizations and measurements of in vivo biological processes at the molecular or cellular level using specific imaging probes. As an emerging technology, biocompatible macromolecular or nanoparticle based targeted imaging probes have gained increasing popularities. Those complexes consist of a carrier, an imaging reporter, and a targeting ligand. The active targeting ability dramatically increases the specificity. And the multivalency effect may further reduce the dose while providing a decent signal. In this thesis, sentinel lymph node (SLN) mapping and cancer imaging are two research topics. The focus is to develop molecular imaging probes with high specificity and sensitivity, for Positron Emission Tomography (PET) and optical imaging. The objective of this thesis is to explore dextran radiopharmaceuticals and porous silicon nanoparticles based molecular imaging agents. Dextran polymers are excellent carriers to deliver imaging reporters or therapeutic agents due to its well established safety profile and oligosaccharide conjugation chemistry. There is also a wide selection of dextran polymers with different lengths. On the other hand, Silicon nanoparticles represent another class of biodegradable materials for imaging and drug delivery. The success in fluorescence lifetime imaging and enhancements of the immune activation potency was briefly discussed. Chapter 1 begins with an overview on current molecular imaging techniques and imaging probes. Chapter 2 presents a near-IR dye conjugated probe, IRDye 800CW-tilmanocept. Fluorophore density was optimized to generate the maximum brightness. It was labeled with 68Ga and 99mTc and in vivo SLN mapping was successfully performed in different animals, such as mice, rabbits, dogs and pigs. With 99mTc labeled IRDye 800CW-tilmanocept, chapter 3 introduces a two-day imaging protocol with a hand-held imager. Chapter 4 proposed a method to dual radiolabel the IRDye 800CW-tilmanocept with both 68Ga and

  20. Changing image of correlation optics: introduction.

    Science.gov (United States)

    Angelsky, Oleg V; Desyatnikov, Anton S; Gbur, Gregory J; Hanson, Steen G; Lee, Tim; Miyamoto, Yoko; Schneckenburger, Herbert; Wyant, James C

    2016-04-20

    This feature issue of Applied Optics contains a series of selected papers reflecting recent progress of correlation optics and illustrating current trends in vector singular optics, internal energy flows at light fields, optical science of materials, and new biomedical applications of lasers.

  1. Handbook of 3D machine vision optical metrology and imaging

    CERN Document Server

    Zhang, Song

    2013-01-01

    With the ongoing release of 3D movies and the emergence of 3D TVs, 3D imaging technologies have penetrated our daily lives. Yet choosing from the numerous 3D vision methods available can be frustrating for scientists and engineers, especially without a comprehensive resource to consult. Filling this gap, Handbook of 3D Machine Vision: Optical Metrology and Imaging gives an extensive, in-depth look at the most popular 3D imaging techniques. It focuses on noninvasive, noncontact optical methods (optical metrology and imaging). The handbook begins with the well-studied method of stereo vision and

  2. Optical-thermal light-tissue interactions during photoacoustic imaging

    Science.gov (United States)

    Gould, Taylor; Wang, Quanzeng; Pfefer, T. Joshua

    2014-03-01

    Photoacoustic imaging (PAI) has grown rapidly as a biomedical imaging technique in recent years, with key applications in cancer diagnosis and oximetry. In spite of these advances, the literature provides little insight into thermal tissue interactions involved in PAI. To elucidate these basic phenomena, we have developed, validated, and implemented a three-dimensional numerical model of tissue photothermal (PT) response to repetitive laser pulses. The model calculates energy deposition, fluence distributions, transient temperature and damage profiles in breast tissue with blood vessels and generalized perfusion. A parametric evaluation of these outputs vs. vessel diameter and depth, optical beam diameter, wavelength, and irradiance, was performed. For a constant radiant exposure level, increasing beam diameter led to a significant increase in subsurface heat generation rate. Increasing vessel diameter resulted in two competing effects - reduced mean energy deposition in the vessel due to light attenuation and greater thermal superpositioning due to reduced thermal relaxation. Maximum temperatures occurred either at the surface or in subsurface regions of the dermis, depending on vessel geometry and position. Results are discussed in terms of established exposure limits and levels used in prior studies. While additional experimental and numerical study is needed, numerical modeling represents a powerful tool for elucidating the effect of PA imaging devices on biological tissue.

  3. Pattern recognition software and techniques for biological image analysis.

    Directory of Open Access Journals (Sweden)

    Lior Shamir

    Full Text Available The increasing prevalence of automated image acquisition systems is enabling new types of microscopy experiments that generate large image datasets. However, there is a perceived lack of robust image analysis systems required to process these diverse datasets. Most automated image analysis systems are tailored for specific types of microscopy, contrast methods, probes, and even cell types. This imposes significant constraints on experimental design, limiting their application to the narrow set of imaging methods for which they were designed. One of the approaches to address these limitations is pattern recognition, which was originally developed for remote sensing, and is increasingly being applied to the biology domain. This approach relies on training a computer to recognize patterns in images rather than developing algorithms or tuning parameters for specific image processing tasks. The generality of this approach promises to enable data mining in extensive image repositories, and provide objective and quantitative imaging assays for routine use. Here, we provide a brief overview of the technologies behind pattern recognition and its use in computer vision for biological and biomedical imaging. We list available software tools that can be used by biologists and suggest practical experimental considerations to make the best use of pattern recognition techniques for imaging assays.

  4. Limitations to adaptive optics image quality in rodent eyes

    OpenAIRE

    Zhou, Xiaolin; Bedggood, Phillip; Metha, Andrew

    2012-01-01

    Adaptive optics (AO) retinal image quality of rodent eyes is inferior to that of human eyes, despite the promise of greater numerical aperture. This paradox challenges several assumptions commonly made in AO imaging, assumptions which may be invalidated by the very high power and dioptric thickness of the rodent retina. We used optical modeling to compare the performance of rat and human eyes under conditions that tested the validity of these assumptions. Results showed that AO image quality ...

  5. Advances in Optical Spectroscopy and Imaging of Breast Lesions

    Energy Technology Data Exchange (ETDEWEB)

    Demos, S; Vogel, A J; Gandjbakhche, A H

    2006-01-03

    A review is presented of recent advances in optical imaging and spectroscopy and the use of light for addressing breast cancer issues. Spectroscopic techniques offer the means to characterize tissue components and obtain functional information in real time. Three-dimensional optical imaging of the breast using various illumination and signal collection schemes in combination with image reconstruction algorithms may provide a new tool for cancer detection and monitoring of treatment.

  6. A compact gamma camera for biological imaging

    Energy Technology Data Exchange (ETDEWEB)

    Bradley, E L; Cella, J; Majewski, S; Popov, V; Qian, Jianguo; Saha, M S; Smith, M F; Weisenberger, A G; Welsh, R E

    2006-02-01

    A compact detector, sized particularly for imaging a mouse, is described. The active area of the detector is approximately 46 mm; spl times/ 96 mm. Two flat-panel Hamamatsu H8500 position-sensitive photomultiplier tubes (PSPMTs) are coupled to a pixellated NaI(Tl) scintillator which views the animal through a copper-beryllium (CuBe) parallel-hole collimator specially designed for {sup 125}I. Although the PSPMTs have insensitive areas at their edges and there is a physical gap, corrections for scintillation light collection at the junction between the two tubes results in a uniform response across the entire rectangular area of the detector. The system described has been developed to optimize both sensitivity and resolution for in-vivo imaging of small animals injected with iodinated compounds. We demonstrate an in-vivo application of this detector, particularly to SPECT, by imaging mice injected with approximately 10-15; spl mu/Ci of {sup 125}I.

  7. Fast quantitative retardance imaging of biological samples using quadri-wave interferometry (Conference Presentation)

    Science.gov (United States)

    Aknoun, Sherazade; Bon, Pierre; Savatier, Julien; Monneret, Serge; Wattellier, Benoit F.

    2016-03-01

    We describe the use of polarized spatially coherent illumination to perform linear retardance imaging and measurements of semi-transparent biological samples using a quantitative phase imaging technique [1]. Quantitative phase imaging techniques [2-5] are used in microscopy for the imaging of semi-transparent samples and gives information about the optical path difference (OPD). The strength of those techniques is their non-invasive (the sample is not labelled) and fast approach. However, this high contrast is non-specific and cannot be linked to specific properties of the sample. To overcome this limitation, we propose to use polarized light in combination with QPI. Indeed, anisotropy has been used to reveal ordered fibrous structures in biological samples without any staining or labelling with polarized light microscopy [6-8]. Recent studies have shown polarimetry as a potential diagnostic tool for various dermatological diseases on thick tissue samples [9]. Particularly, specific collagen fibers spatial distribution has been demonstrated to be a signature for the optical diagnosis and prognosis of cancer in tissues [10]. In this paper, we describe a technical improvement of our technique based on high-resolution quadri-wave lateral shearing interferometry (QWLSI) and liquid crystal retarder to perform quantitative linear birefringence measurements on biological samples. The system combines a set of quantitative phase images with different excitation polarizations to create birefringence images. These give information about the local retardance and orientation of biological anisotropic components. We propose using a commercial QWLSI [11] (SID4Bio, Phasics SA, Saint Aubin, France) directly plugged onto a lateral video port of an inverted microscope (TE2000-U, Nikon, Japan). We are able to take retardance images in less than 1 second which allows us to record dynamic phenomena (living cells study) and make high speed acquisitions to reconstruct tissues virtual

  8. Nucleic Acid-Based Nanodevices in Biological Imaging.

    Science.gov (United States)

    Chakraborty, Kasturi; Veetil, Aneesh T; Jaffrey, Samie R; Krishnan, Yamuna

    2016-06-01

    The nanoscale engineering of nucleic acids has led to exciting molecular technologies for high-end biological imaging. The predictable base pairing, high programmability, and superior new chemical and biological methods used to access nucleic acids with diverse lengths and in high purity, coupled with computational tools for their design, have allowed the creation of a stunning diversity of nucleic acid-based nanodevices. Given their biological origin, such synthetic devices have a tremendous capacity to interface with the biological world, and this capacity lies at the heart of several nucleic acid-based technologies that are finding applications in biological systems. We discuss these diverse applications and emphasize the advantage, in terms of physicochemical properties, that the nucleic acid scaffold brings to these contexts. As our ability to engineer this versatile scaffold increases, its applications in structural, cellular, and organismal biology are clearly poised to massively expand. PMID:27294440

  9. SPECIAL ASPECTS OF INITIAL OPTICAL SCHEME SELECTION FOR DESIGN OF NON-IMAGING OPTICAL SYSTEMS

    Directory of Open Access Journals (Sweden)

    R. V. Anitropov

    2016-01-01

    Full Text Available Subject of Research. The research results, structural composition analysis and the parametric synthesis of the projected imaging and non-imaging optical systems were presented. We made an attempt to use the gained experience about imaging systems while designing non-imaging systems, by adapting the composition theory for the calculations of non-imaging systems. Several patterns were revealed, which provide a deeper understanding of the design process of non-imaging optical systems; measures of its optimization were proposed. Method. We investigated the applicability of the theory of composition and synthesis of non-imaging optical systems. The main provisions of the theory of composition are based on the division of all available optical elements in four types depending on their functionality, which corresponds to a modular design. Similar items were identified in non-imaging optical systems and adaptation of composition theory to their design became possible. Main Results. General design patterns of imaging and non-imaging optical systems were studied. Classification of systems, components, as well as technical and generic characteristics of imaging and non-imaging optical systems was determined. Search mechanism of the initial optical system by means of structural and parametric synthesis of non-imaging optical system was formalized. The basic elements were determined included in non-imaging systems and their classification by functionality was done. They were subdivided into basic, corrective, wide angle and high aperture ones. The rules for formation of these elements and their composition were determined: surface reflecting, refracting, spherical and nonspherical elements with total internal reflection. The foundations of composition theory for non-imaging optical systems were laid. The approbation of this method was carried out on the example of the illumination system calculation for surgical room. A 3D model of an illumination optical

  10. Fiber optic direct Raman imaging system based on a hollow-core fiber bundle

    Science.gov (United States)

    Inoue, S.; Katagiri, T.; Matsuura, Y.

    2015-03-01

    A Raman imaging system which combined a hollow fiber bundle and a direct imaging technique was constructed for high-speed endoscopic Raman imaging. The hollow fiber bundle is fabricated by depositing a silver thin film on the inner surface of pre-drawn glass capillary bundle. It performs as a fiber optic probe which transmits a Raman image with high signal-to-noise ratio because the propagating light is confined into the air core inducing little light scattering. The field of view on the sample is uniformly irradiated by the excitation laser light via the probe. The back-scattered image is collected by the probe and captured directly by an image sensor. A pair of thin film tunable filters is used to select target Raman band. This imaging system enables flexible and high-speed Raman imaging of biological tissues.

  11. Radiance and photon noise: imaging in geometrical optics, physical optics, quantum optics and radiology

    Science.gov (United States)

    Caucci, Luca; Myers, Kyle J.; Barrett, Harrison H.

    2016-01-01

    The statistics of detector outputs produced by an imaging system are derived from basic radiometric concepts and definitions. We show that a fundamental way of describing a photon-limited imaging system is in terms of a Poisson random process in spatial, angular, and wavelength variables. We begin the paper by recalling the concept of radiance in geometrical optics, radiology, physical optics, and quantum optics. The propagation and conservation laws for radiance in each of these domains are reviewed. Building upon these concepts, we distinguish four categories of imaging detectors that all respond in some way to the incident radiance, including the new category of photon-processing detectors (capable of measuring radiance on a photon-by-photon basis). This allows us to rigorously show how the concept of radiance is related to the statistical properties of detector outputs and to the information content of a single detected photon. A Monte-Carlo technique, which is derived from the Boltzmann transport equation, is presented as a way to estimate probability density functions to be used in reconstruction from photon-processing data.

  12. Optical Processing of Speckle Images with Bacteriorhodopsin for Pattern Recognition

    Science.gov (United States)

    Downie, John D.; Tucker, Deanne (Technical Monitor)

    1994-01-01

    Logarithmic processing of images with multiplicative noise characteristics can be utilized to transform the image into one with an additive noise distribution. This simplifies subsequent image processing steps for applications such as image restoration or correlation for pattern recognition. One particularly common form of multiplicative noise is speckle, for which the logarithmic operation not only produces additive noise, but also makes it of constant variance (signal-independent). We examine the optical transmission properties of some bacteriorhodopsin films here and find them well suited to implement such a pointwise logarithmic transformation optically in a parallel fashion. We present experimental results of the optical conversion of speckle images into transformed images with additive, signal-independent noise statistics using the real-time photochromic properties of bacteriorhodopsin. We provide an example of improved correlation performance in terms of correlation peak signal-to-noise for such a transformed speckle image.

  13. Photoswitchable Spiropyran Dyads for Biological Imaging.

    Science.gov (United States)

    Xiong, Yaoyao; Rivera-Fuentes, Pablo; Sezgin, Erdinc; Vargas Jentzsch, Andreas; Eggeling, Christian; Anderson, Harry L

    2016-08-01

    The synthesis of a small-molecule dyad consisting of a far-red-emitting silicon rhodamine dye that is covalently linked to a photochromic spironaphthothiopyran unit, which serves as a photoswitchable quencher, is reported. This system can be switched reversibly between the fluorescent and nonfluorescent states using visible light at wavelengths of 405 and 630 nm, respectively, and it works effectively in aqueous solution. Live-cell imaging demonstrates that this dyad has several desirable features, including excellent membrane permeability, fast and reversible modulation of fluorescence by visible light, and good contrast between the bright and dark states. PMID:27456166

  14. Encoded diffractive optics for full-spectrum computational imaging.

    Science.gov (United States)

    Heide, Felix; Fu, Qiang; Peng, Yifan; Heidrich, Wolfgang

    2016-01-01

    Diffractive optical elements can be realized as ultra-thin plates that offer significantly reduced footprint and weight compared to refractive elements. However, such elements introduce severe chromatic aberrations and are not variable, unless used in combination with other elements in a larger, reconfigurable optical system. We introduce numerically optimized encoded phase masks in which different optical parameters such as focus or zoom can be accessed through changes in the mechanical alignment of a ultra-thin stack of two or more masks. Our encoded diffractive designs are combined with a new computational approach for self-calibrating imaging (blind deconvolution) that can restore high-quality images several orders of magnitude faster than the state of the art without pre-calibration of the optical system. This co-design of optics and computation enables tunable, full-spectrum imaging using thin diffractive optics. PMID:27633055

  15. Optical microscopic imaging based on VRML language

    Science.gov (United States)

    Zhang, Xuedian; Zhang, Zhenyi; Sun, Jun

    2009-11-01

    As so-called VRML (Virtual Reality Modeling Language), is a kind of language used to establish a model of the real world or a colorful world made by people. As in international standard, VRML is the main kind of program language based on the "www" net building, which is defined by ISO, the kind of MIME is x-world or x-VRML. The most important is that it has no relationship with the operating system. Otherwise, because of the birth of VRML 2.0, its ability of describing the dynamic condition gets better, and the interaction of the internet evolved too. The use of VRML will bring a revolutionary change of confocal microscope. For example, we could send different kinds of swatch in virtual 3D style to the net. On the other hand, scientists in different countries could use the same microscope in the same time to watch the same samples by the internet. The mode of sending original data in the model of text has many advantages, such as: the faster transporting, the fewer data, the more convenient updating and fewer errors. In the following words we shall discuss the basic elements of using VRML in the field of Optical Microscopic imaging.

  16. A simple multipurpose double-beam optical image analyzer

    CERN Document Server

    Popowicz, Adam

    2016-01-01

    In the paper we present a low cost optical device which splits the light in the focal plane into two separate optical paths and collimates it back into a single image plane, and where a selective information processing ca be carried out. The optical system is straightforward and easy implementable as it consists of only three lens and two mirrors. The system is dedicated for imaging in low-light-level conditions in which widely used optical devices, based on beam-splitters or dichroic mirrors, suffer from light loss. We expose examples of applications of our device, using a prototype model. The proposed optical system may be employed for: monitoring the objects located in different distances from observer (1), creating regions of different magnification within a single image plane (2), high dynamic range photometry (3), or imaging in two wavelength bands simultaneously (4).

  17. Computational imaging using lightweight diffractive-refractive optics

    KAUST Repository

    Peng, Yifan

    2015-11-23

    Diffractive optical elements (DOE) show great promise for imaging optics that are thinner and more lightweight than conventional refractive lenses while preserving their light efficiency. Unfortunately, severe spectral dispersion currently limits the use of DOEs in consumer-level lens design. In this article, we jointly design lightweight diffractive-refractive optics and post-processing algorithms to enable imaging under white light illumination. Using the Fresnel lens as a general platform, we show three phase-plate designs, including a super-thin stacked plate design, a diffractive-refractive-hybrid lens, and a phase coded-aperture lens. Combined with cross-channel deconvolution algorithm, both spherical and chromatic aberrations are corrected. Experimental results indicate that using our computational imaging approach, diffractive-refractive optics is an alternative candidate to build light efficient and thin optics for white light imaging.

  18. Computational imaging using lightweight diffractive-refractive optics.

    Science.gov (United States)

    Peng, Yifan; Fu, Qiang; Amata, Hadi; Su, Shuochen; Heide, Felix; Heidrich, Wolfgang

    2015-11-30

    Diffractive optical elements (DOE) show great promise for imaging optics that are thinner and more lightweight than conventional refractive lenses while preserving their light efficiency. Unfortunately, severe spectral dispersion currently limits the use of DOEs in consumer-level lens design. In this article, we jointly design lightweight diffractive-refractive optics and post-processing algorithms to enable imaging under white light illumination. Using the Fresnel lens as a general platform, we show three phase-plate designs, including a super-thin stacked plate design, a diffractive-refractive-hybrid lens, and a phase coded-aperture lens. Combined with cross-channel deconvolution algorithm, both spherical and chromatic aberrations are corrected. Experimental results indicate that using our computational imaging approach, diffractive-refractive optics is an alternative candidate to build light efficient and thin optics for white light imaging.

  19. A simple multipurpose double-beam optical image analyzer

    Science.gov (United States)

    Popowicz, A.; Blachowicz, T.

    2016-07-01

    In the paper we present a low cost optical device which splits the light in the focal plane into two separate optical paths and collimates it back into a single image plane, and where a selective information processing can be carried out. The optical system is straightforward and easily implementable as it consists of only three lenses and two mirrors. The system is dedicated for imaging in low-light-level conditions in which widely used optical devices, based on beam splitters or dichroic mirrors, suffer from light loss. We expose examples of applications of our device, using a prototype model. The proposed optical system may be employed for: monitoring the objects located at different distances from observer (1), creating regions of different magnification within a single image plane (2), high dynamic range photometry (3), or imaging in two wavelength bands simultaneously (4).

  20. Subdiffraction incoherent optical imaging via spatial-mode demultiplexing

    CERN Document Server

    Tsang, Mankei

    2016-01-01

    I propose a spatial-mode demultiplexing (SPADE) scheme for the far-field imaging of arbitrary incoherent optical sources. For an object too small to be resolved by direct imaging under the diffraction limit, I show that SPADE can estimate the moments of the source distribution much more precisely than direct imaging can fundamentally do under the effect of photon shot noise.

  1. Fiber Optic Sensors For Detection of Toxic and Biological Threats

    Directory of Open Access Journals (Sweden)

    Jianming Yuan

    2007-12-01

    Full Text Available Protection of public and military personnel from chemical and biological warfareagents is an urgent and growing national security need. Along with this idea, we havedeveloped a novel class of fiber optic chemical sensors, for detection of toxic and biologicalmaterials. The design of these fiber optic sensors is based on a cladding modificationapproach. The original passive cladding of the fiber, in a small section, was removed and thefiber core was coated with a chemical sensitive material. Any change in the opticalproperties of the modified cladding material, due to the presence of a specific chemicalvapor, changes the transmission properties of the fiber and result in modal powerredistribution in multimode fibers. Both total intensity and modal power distribution (MPDmeasurements were used to detect the output power change through the sensing fibers. TheMPD technique measures the power changes in the far field pattern, i.e. spatial intensitymodulation in two dimensions. Conducting polymers, such as polyaniline and polypyrrole,have been reported to undergo a reversible change in conductivity upon exposure tochemical vapors. It is found that the conductivity change is accompanied by optical propertychange in the material. Therefore, polyaniline and polypyrrole were selected as the modifiedcladding material for the detection of hydrochloride (HCl, ammonia (NH3, hydrazine(H4N2, and dimethyl-methl-phosphonate (DMMP {a nerve agent, sarin stimulant},respectively. Several sensors were prepared and successfully tested. The results showeddramatic improvement in the sensor sensitivity, when the MPD method was applied. In thispaper, an overview on the developed class of fiber optic sensors is presented and supportedwith successful achieved results.

  2. Optical Properties and Biological Applications of Electromagnetically Coupled Metal Nanoparticles

    Science.gov (United States)

    Sheikholeslami, Sassan Nathan

    The optical properties of metallic particles change dramatically as the size shrinks to the nanoscale. The familiar mirror-like sheen of bulk metals is replaced by the bright, sharp, colorful plasmonic resonances of nanoparticles. The resonances of plasmonic metal nanoparticles are highly tunable throughout the visible spectrum, depending on the size, shape, local dielectric environment, and proximity to other optical resonances. Fundamental and applied research in the nanoscience community in the past few decades has sought to understand and exploit these phenomena for biological applications. In this work, discrete nanoparticle assemblies were produced through biomolecular interactions and studied at the single particle level with darkfield spectroscopy. Pairs of gold nanoparticles tethered by DNA were utilized as molecular rulers to study the dynamics of DNA bending by the restriction enzyme EcoRV. These results substantiated that nanoparticle rulers, deemed "plasmon rulers", could measure the dynamics of single biomolecules with high throughput, long lifetime, and high temporal resolution. To extend these concepts for live cell studies, a plasmon ruler comprised of peptide-linked gold nanoparticle satellites around a core particle was synthesized and utilized to optically follow cell signaling pathways in vivo at the single molecule level. The signal provided by these plasmon rulers allowed continuous observation of caspase-3 activation at the single molecule level in living cells for over 2 hours, unambiguously identifying early stage activation of caspase-3 in apoptotic cells. In the last section of this dissertation, an experimental and theoretical study of electomagnetic coupling in asymmetric metal nanoparticle dimers is presented. A "heterodimer" composed of a silver particle and a gold particle is observed to have a novel coupling between a plasmon mode (free electron oscillations) and an inter-band absorption process (bound electron transitions). The

  3. Optical Imaging and Microscopy Techniques and Advanced Systems

    CERN Document Server

    Török, Peter

    2007-01-01

    This text on contemporary optical systems is intended for optical researchers and engineers, graduate students and optical microscopists in the biological and biomedical sciences. This second edition contains two completely new chapters. In addition most of the chapters from the first edition have been revised and updated. The book consists of three parts: The first discusses high-aperture optical systems, which form the backbone of optical microscopes. An example is a chapter new in the second edition on the emerging field of high numerical aperture diffractive lenses which seems to have particular promise in improving the correction of lenses. In this part particular attention is paid to optical data storage. The second part is on the use of non-linear optical techniques, including nonlinear optical excitation (total internal reflection fluorescence, second and third harmonic generation and two photon microscopy) and non-linear spectroscopy (CARS). The final part of the book presents miscellaneous technique...

  4. Optical-digital hybrid image search system in cloud environment

    Science.gov (United States)

    Ikeda, Kanami; Kodate, Kashiko; Watanabe, Eriko

    2016-09-01

    To improve the versatility and usability of optical correlators, we developed an optical-digital hybrid image search system consisting of digital servers and an optical correlator that can be used to perform image searches in the cloud environment via a web browser. This hybrid system employs a simple method to obtain correlation signals and has a distributed network design. The correlation signals are acquired by using an encoder timing signal generated by a rotating disk, and the distributed network design facilitates the replacement and combination of the digital correlation server and the optical correlator.

  5. Dynamic differential imaging of intrinsic optical responses in the retina

    Science.gov (United States)

    Yao, Xin-Cheng; Li, Yang-Guo; Liu, Lei; Amthor, Frank

    2010-02-01

    High resolution monitoring of stimulus-evoked retinal neural activities is important for understanding retinal neural mechanisms, and for diagnosis of retinal disease and evaluation of treatment. Fast intrinsic optical signals (IOSs), which have the time courses comparable to retinal electrophysiological responses, hold the promise for high resolution imaging of retinal neural activities. However, application of fast IOS imaging has been hindered by contamination of slow, high magnitude, optical responses associated with transient hemodynamic and metabolic changes. We recently demonstrated the feasibility of separating fast IOSs from slow optical responses by combined dynamic differential imaging and high frequency flicker stimulation.

  6. Confocal Imaging of Biological Tissues Using Second Harmonic Generation

    International Nuclear Information System (INIS)

    A confocal microscopy imaging system was devised to selectively detect Second harmonic signals generated by biological tissues. Several types of biological tissues were examined using this imaging system, including human teeth, bovine blood vessels, and chicken skin. All these tissues generated strong second harmonic signals. There is considerable evidence that the source of these signals in tissue is collagen. Collagen, the predominant component of most tissues, is known to have second order nonlinear susceptibility. This technique may have diagnostic usefulness in pathophysiological conditions characterized by changes in collagen structure including malignant transformation of nevi, progression of diabetic complications, and abnormalities in wound healing

  7. Confocal Imaging of Biological Tissues Using Second Harmonic Generation

    Energy Technology Data Exchange (ETDEWEB)

    Kim, B-M.; Stoller, P.; Reiser, K.; Eichler, J.; Yan, M.; Rubenchik, A.; Da Silva, L.

    2000-03-06

    A confocal microscopy imaging system was devised to selectively detect Second harmonic signals generated by biological tissues. Several types of biological tissues were examined using this imaging system, including human teeth, bovine blood vessels, and chicken skin. All these tissues generated strong second harmonic signals. There is considerable evidence that the source of these signals in tissue is collagen. Collagen, the predominant component of most tissues, is known to have second order nonlinear susceptibility. This technique may have diagnostic usefulness in pathophysiological conditions characterized by changes in collagen structure including malignant transformation of nevi, progression of diabetic complications, and abnormalities in wound healing.

  8. The in vivo activation of persistent nanophosphors for optical imaging of vascularization, tumours and grafted cells

    Science.gov (United States)

    Maldiney, Thomas; Bessière, Aurélie; Seguin, Johanne; Teston, Eliott; Sharma, Suchinder K.; Viana, Bruno; Bos, Adrie J. J.; Dorenbos, Pieter; Bessodes, Michel; Gourier, Didier; Scherman, Daniel; Richard, Cyrille

    2014-04-01

    Optical imaging for biological applications requires more sensitive tools. Near-infrared persistent luminescence nanoparticles enable highly sensitive in vivo optical detection and complete avoidance of tissue autofluorescence. However, the actual generation of persistent luminescence nanoparticles necessitates ex vivo activation before systemic administration, which prevents long-term imaging in living animals. Here, we introduce a new generation of optical nanoprobes, based on chromium-doped zinc gallate, whose persistent luminescence can be activated in vivo through living tissues using highly penetrating low-energy red photons. Surface functionalization of this photonic probe can be adjusted to favour multiple biomedical applications such as tumour targeting. Notably, we show that cells can endocytose these nanoparticles in vitro and that, after intravenous injection, we can track labelled cells in vivo and follow their biodistribution by a simple whole animal optical detection, opening new perspectives for cell therapy research and for a variety of diagnosis applications.

  9. Optical tissue clearing improves usability of optical coherence tomography (OCT) for high-throughput analysis of the internal structure and 3D morphology of small biological objects such as vertebrate embryos

    DEFF Research Database (Denmark)

    Thrane, Lars; Jørgensen, Thomas Martini; Männer, Jörg

    2014-01-01

    sections through small biological objects at high resolutions. However, due to light scattering within biological tissues, the quality of OCT images drops significantly with increasing penetration depth of the light beam. We show that optical clearing of fixed embryonic organs with methyl benzoate can...

  10. Digital adaptive optics line-scanning confocal imaging system

    Science.gov (United States)

    Liu, Changgeng; Kim, Myung K.

    2015-11-01

    A digital adaptive optics line-scanning confocal imaging (DAOLCI) system is proposed by applying digital holographic adaptive optics to a digital form of line-scanning confocal imaging system. In DAOLCI, each line scan is recorded by a digital hologram, which allows access to the complex optical field from one slice of the sample through digital holography. This complex optical field contains both the information of one slice of the sample and the optical aberration of the system, thus allowing us to compensate for the effect of the optical aberration, which can be sensed by a complex guide star hologram. After numerical aberration compensation, the corrected optical fields of a sequence of line scans are stitched into the final corrected confocal image. In DAOLCI, a numerical slit is applied to realize the confocality at the sensor end. The width of this slit can be adjusted to control the image contrast and speckle noise for scattering samples. DAOLCI dispenses with the hardware pieces, such as Shack-Hartmann wavefront sensor and deformable mirror, and the closed-loop feedbacks adopted in the conventional adaptive optics confocal imaging system, thus reducing the optomechanical complexity and cost. Numerical simulations and proof-of-principle experiments are presented that demonstrate the feasibility of this idea.

  11. Optical color-image encryption and synthesis using coherent diffractive imaging in the Fresnel domain.

    Science.gov (United States)

    Chen, Wen; Chen, Xudong; Sheppard, Colin J R

    2012-02-13

    We propose a new method using coherent diffractive imaging for optical color-image encryption and synthesis in the Fresnel domain. An optical multiple-random-phase-mask encryption system is applied, and a strategy based on lateral translations of a phase-only mask is employed during image encryption. For the decryption, an iterative phase retrieval algorithm is applied to extract high-quality decrypted color images from diffraction intensity maps (i.e., ciphertexts). In addition, optical color-image synthesis is also investigated based on coherent diffractive imaging. Numerical results are presented to demonstrate feasibility and effectiveness of the proposed method. Compared with conventional interference methods, coherent diffractive imaging approach may open up a new research perspective or can provide an effective alternative for optical color-image encryption and synthesis.

  12. Optical molecular imaging for detection of Barrett's-associated neoplasia

    Institute of Scientific and Technical Information of China (English)

    Nadhi Thekkek; Sharmila Anandasabapathy; Rebecca Richards-Kortum

    2011-01-01

    Recent advancements in the endoscopic imaging of Barrett's esophagus can be used to probe a wide range of optical properties that are altered with neoplastic progression.This review summarizes relevant changes in optical properties as well as imaging approaches that measures those changes.Wide-field imaging approaches include narrow-band imaging that measures changes in light scattering and absorption,and autofluorescence imaging that measure changes in endogenous fluorophores.High-resolution imaging approaches include optical coherence tomography,endocytoscopy,confocal microendoscopy,and high-resolution microendoscopy.These technologies,some coupled with an appropriate contrast agent,can measure differences in glandular morphology,nuclear morphology,or vascular alterations associated with neoplasia.Advances in targeted contrast agents are further discussed.Studies that have explored these technologies are highlighted;as are the advantages and limitations of each.

  13. Compound focusing mirror and X-ray waveguide optics for coherent imaging and nano-diffraction.

    Science.gov (United States)

    Salditt, Tim; Osterhoff, Markus; Krenkel, Martin; Wilke, Robin N; Priebe, Marius; Bartels, Matthias; Kalbfleisch, Sebastian; Sprung, Michael

    2015-07-01

    A compound optical system for coherent focusing and imaging at the nanoscale is reported, realised by high-gain fixed-curvature elliptical mirrors in combination with X-ray waveguide optics or different cleaning apertures. The key optical concepts are illustrated, as implemented at the Göttingen Instrument for Nano-Imaging with X-rays (GINIX), installed at the P10 coherence beamline of the PETRA III storage ring at DESY, Hamburg, and examples for typical applications in biological imaging are given. Characteristic beam configurations with the recently achieved values are also described, meeting the different requirements of the applications, such as spot size, coherence or bandwidth. The emphasis of this work is on the different beam shaping, filtering and characterization methods.

  14. Biologically inspired optics: analog semiconductor model of the beetle exoskeleton

    Science.gov (United States)

    Buhl, Kaia; Roth, Zachary; Srinivasan, Pradeep; Rumpf, Raymond; Johnson, Eric

    2008-08-01

    Evolution in nature has produced through adaptation a wide variety of distinctive optical structures in many life forms. For example, pigment differs greatly from the observed color of most beetles because their exoskeletons contain multilayer coatings. The green beetle is disguised in a surrounding leaf by having a comparable reflection spectrum as the leaves. The Manuka and June beetle have a concave structure where light incident at any angle on the concave structures produce matching reflection spectra. In this work, semiconductor processing methods were used to duplicate the structure of the beetle exoskeleton. This was achieved by combining analog lithography with a multilayer deposition process. The artificial exoskeleton, 3D concave multilayer structure, demonstrates a wide field of view with a unique spectral response. Studying and replicating these biologically inspired nanostructures may lead to new knowledge for fabrication and design of new and novel nano-photonic devices, as well as provide valuable insight to how such phenomenon is exploited.

  15. Image science and image-quality research in the Optical Sciences Center

    Science.gov (United States)

    Barrett, Harrison H.; Myers, Kyle J.

    2014-09-01

    This paper reviews the history of research into imaging and image quality at the Optical Sciences Center (OSC), with emphasis on the period 1970-1990. The work of various students in the areas of psychophysical studies of human observers of images; mathematical model observers; image simulation and analysis, and the application of these methods to radiology and nuclear medicine is summarized. The rapid progress in computational power, at OSC and elsewhere, which enabled the steady advances in imaging and the emergence of a science of imaging, is also traced. The implications of these advances to ongoing research and the current Image Science curriculum at the College of Optical Sciences are discussed.

  16. RNA aptamer probes as optical imaging agents for the detection of amyloid plaques.

    Directory of Open Access Journals (Sweden)

    Christian T Farrar

    Full Text Available Optical imaging using multiphoton microscopy and whole body near infrared imaging has become a routine part of biomedical research. However, optical imaging methods rely on the availability of either small molecule reporters or genetically encoded fluorescent proteins, which are challenging and time consuming to develop. While directly labeled antibodies can also be used as imaging agents, antibodies are species specific, can typically not be tagged with multiple fluorescent reporters without interfering with target binding, and are bioactive, almost always eliciting a biological response and thereby influencing the process that is being studied. We examined the possibility of developing highly specific and sensitive optical imaging agents using aptamer technology. We developed a fluorescently tagged anti-Aβ RNA aptamer, β55, which binds amyloid plaques in both ex vivo human Alzheimer's disease brain tissue and in vivo APP/PS1 transgenic mice. Diffuse β55 positive halos, attributed to oligomeric Aβ, were observed surrounding the methoxy-XO4 positive plaque cores. Dot blots of synthetic Aβ aggregates provide further evidence that β55 binds both fibrillar and non-fibrillar Aβ. The high binding affinity, the ease of probe development, and the ability to incorporate multiple and multimodal imaging reporters suggest that RNA aptamers may have complementary and perhaps advantageous properties compared to conventional optical imaging probes and reporters.

  17. Coherent optical spectroscopy in a biological semiconductor quantum dot-DNA hybrid system

    OpenAIRE

    Li, Jin-Jin; Zhu, Ka-Di

    2012-01-01

    We theoretically investigate coherent optical spectroscopy of a biological semiconductor quantum dot (QD) coupled to DNA molecules. Coupling with DNAs, the linear optical responses of the peptide QDs will be enhanced significantly in the simultaneous presence of two optical fields. Based on this technique, we propose a scheme to measure the vibrational frequency of DNA and the coupling strength between peptide QD and DNA in all-optical domain. Distinct with metallic quantum dot, biological QD...

  18. An adaptive optics imaging system designed for clinical use.

    Science.gov (United States)

    Zhang, Jie; Yang, Qiang; Saito, Kenichi; Nozato, Koji; Williams, David R; Rossi, Ethan A

    2015-06-01

    Here we demonstrate a new imaging system that addresses several major problems limiting the clinical utility of conventional adaptive optics scanning light ophthalmoscopy (AOSLO), including its small field of view (FOV), reliance on patient fixation for targeting imaging, and substantial post-processing time. We previously showed an efficient image based eye tracking method for real-time optical stabilization and image registration in AOSLO. However, in patients with poor fixation, eye motion causes the FOV to drift substantially, causing this approach to fail. We solve that problem here by tracking eye motion at multiple spatial scales simultaneously by optically and electronically integrating a wide FOV SLO (WFSLO) with an AOSLO. This multi-scale approach, implemented with fast tip/tilt mirrors, has a large stabilization range of ± 5.6°. Our method consists of three stages implemented in parallel: 1) coarse optical stabilization driven by a WFSLO image, 2) fine optical stabilization driven by an AOSLO image, and 3) sub-pixel digital registration of the AOSLO image. We evaluated system performance in normal eyes and diseased eyes with poor fixation. Residual image motion with incremental compensation after each stage was: 1) ~2-3 arc minutes, (arcmin) 2) ~0.5-0.8 arcmin and, 3) ~0.05-0.07 arcmin, for normal eyes. Performance in eyes with poor fixation was: 1) ~3-5 arcmin, 2) ~0.7-1.1 arcmin and 3) ~0.07-0.14 arcmin. We demonstrate that this system is capable of reducing image motion by a factor of ~400, on average. This new optical design provides additional benefits for clinical imaging, including a steering subsystem for AOSLO that can be guided by the WFSLO to target specific regions of interest such as retinal pathology and real-time averaging of registered images to eliminate image post-processing.

  19. Quality assessment for spectral domain optical coherence tomography (OCT) images

    OpenAIRE

    LIU, SHUANG; Paranjape, Amit S.; Elmaanaoui, Badr; Dewelle, Jordan; Rylander, H. Grady; Markey, Mia K.; Milner, Thomas E.

    2009-01-01

    Retinal nerve fiber layer (RNFL) thickness, a measure of glaucoma progression, can be measured in images acquired by spectral domain optical coherence tomography (OCT). The accuracy of RNFL thickness estimation, however, is affected by the quality of the OCT images. In this paper, a new parameter, signal deviation (SD), which is based on the standard deviation of the intensities in OCT images, is introduced for objective assessment of OCT image quality. Two other objective assessment paramete...

  20. Progress of Focusing X-ray and Gamma-ray Optics for Small Animal Imaging

    Energy Technology Data Exchange (ETDEWEB)

    Pivovaroff, M J; Funk, T; Barber, W C; Ramsey, B D; Hasegawa, B H

    2005-08-05

    Significant effort is currently being devoted to the development of noninvasive imaging systems that allow in vivo assessment of biological and biomolecular interactions in mice and other small animals. Ideally, one would like to discern these functional and metabolic relationships with in vivo radionuclide imaging at spatial resolutions approaching those that can be obtained using the anatomical imaging techniques (i.e., <100 {micro}m), which would help to answer outstanding questions in many areas of biomedicine. In this paper, we report progress on our effort to develop high-resolution focusing X-ray and gamma-ray optics for small-animal radionuclide imaging. The use of reflective optics, in contrast to methods that rely on absorptive collimation like single- or multiple-pinhole cameras, decouples spatial resolution from sensitivity (efficiency). Our feasibility studies have refined and applied ray-tracing routines to design focusing optics for small animal studies. We also have adopted a replication technique to manufacture the X-ray mirrors, and which in experimental studies have demonstrated a spatial resolution of {approx}190 {micro}m. We conclude that focusing optics can be designed and fabricated for gamma-ray energies, and with spatial resolutions, and field of view suitable for in vivo biological studies. While the efficiency of a single optic is limited, fabrication methods now are being developed that may make it possible to develop imaging systems with multiple optics that could collect image data over study times that would be practical for performing radionuclide studies of small animals.

  1. Sub-diffraction-Limit Imaging in Optical Hyperlens

    Institute of Scientific and Technical Information of China (English)

    HU Ji-Gang; WANG Pei; LU Yong-Hua; MING Hai; CHEN Chun-Chong; CHEN Jun-Xue

    2008-01-01

    @@ Sub-diffraction-limit imaging in the optical hyperlens based on cylindrical metamaterials is studied. Some param-eters of hyperlens, such as the dispersive relation and the divergence angle of imaging, are numerically analysed with the ray trajectory method and effective medium theory. The dependence of imaging properties on dielectric constant is discussed. As a result, a 0° divergence angle is obtained for the best imaging effect. This work will be helpful for the design, structure fabrication and resolution improvement of the optical hyperlens.

  2. Electro-Optic Imaging Fourier Transform Spectral Polarimeter Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Boulder Nonlinear Systems, Inc. (BNS) proposes to develop an Electro-Optic Imaging Fourier Transform Spectral Polarimeter (E-O IFTSP). The polarimetric system is...

  3. Single Molecule Imaging in Living Cell with Optical Method

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Significance, difficult, international developing actuality and our completed works for single molecules imaging in living cell with optical method are described respectively. Additionally we give out some suggestions for the technology development further.

  4. Phase-retrieved optical projection tomography for 3D imaging through scattering layers

    Science.gov (United States)

    Ancora, Daniele; Di Battista, Diego; Giasafaki, Georgia; Psycharakis, Stylianos; Liapis, Evangelos; Zacharopoulos, Athanasios; Zacharakis, Giannis

    2016-03-01

    Recently great progress has been made in biological and biomedical imaging by combining non-invasive optical methods, novel adaptive light manipulation and computational techniques for intensity-based phase recovery and three dimensional image reconstruction. In particular and in relation to the work presented here, Optical Projection Tomography (OPT) is a well-established technique for imaging mostly transparent absorbing biological models such as C. Elegans and Danio Rerio. On the contrary, scattering layers like the cocoon surrounding the Drosophila during the pupae stage constitutes a challenge for three dimensional imaging through such a complex structure. However, recent studies enabled image reconstruction through scattering curtains up to few transport mean free paths via phase retrieval iterative algorithms allowing to uncover objects hidden behind complex layers. By combining these two techniques we explore the possibility to perform a three dimensional image reconstruction of fluorescent objects embedded between scattering layers without compromising its structural integrity. Dynamical cross correlation registration was implemented for the registration process due to translational and flipping ambiguity of the phase retrieval problem, in order to provide the correct aligned set of data to perform the back-projection reconstruction. We have thus managed to reconstruct a hidden complex object between static scattering curtains and compared with the effective reconstruction to fully understand the process before the in-vivo biological implementation.

  5. Method and apparatus to image biological interactions in plants

    Science.gov (United States)

    Weisenberger, Andrew; Bonito, Gregory M.; Reid, Chantal D.; Smith, Mark Frederick

    2015-12-22

    A method to dynamically image the actual translocation of molecular compounds of interest in a plant root, root system, and rhizosphere without disturbing the root or the soil. The technique makes use of radioactive isotopes as tracers to label molecules of interest and to image their distribution in the plant and/or soil. The method allows for the study and imaging of various biological and biochemical interactions in the rhizosphere of a plant, including, but not limited to, mycorrhizal associations in such regions.

  6. Plenoptic microscope based on laser optical feedback imaging (LOFI)

    CERN Document Server

    Glastre, W; Jacquin, O; de Chatellus, H Guillet; Lacot, E

    2015-01-01

    We present an overview of the performances of a plenoptic microscope which combines the high sensitivity of a laser optical feedback imaging setup , the high resolution of optical synthetic aperture and a shot noise limited signal to noise ratio by using acoustic photon tagging. By using an adapted phase filtering, this microscope allows phase drift correction and numerical aberration compensation (defocusing, coma, astigmatism ...). This new kind of microscope seems to be well adapted to make deep imaging through scattering and heterogeneous media.

  7. Contrast-based sensorless adaptive optics for retinal imaging

    OpenAIRE

    Zhou, Xiaolin; Bedggood, Phillip; Bui, Bang; Nguyen, Christine T. O.; He, Zheng; Metha, Andrew

    2015-01-01

    Conventional adaptive optics ophthalmoscopes use wavefront sensing methods to characterize ocular aberrations for real-time correction. However, there are important situations in which the wavefront sensing step is susceptible to difficulties that affect the accuracy of the correction. To circumvent these, wavefront sensorless adaptive optics (or non-wavefront sensing AO; NS-AO) imaging has recently been developed and has been applied to point-scanning based retinal imaging modalities. In thi...

  8. Peptide-Based Optical uPAR Imaging for Surgery

    DEFF Research Database (Denmark)

    Juhl, Karina; Christensen, Anders; Persson, Morten;

    2016-01-01

    Near infrared intra-operative optical imaging is an emerging technique with clear implications for improved cancer surgery by enabling a more distinct delineation of the tumor margins during resection. This modality has the potential to increase the number of patients having a curative radical......-operative optical guidance in cancer surgery to ensure complete removal of tumors while preserving adjacent, healthy tissue....

  9. Simulation of Optical and Synthetic Imaging using Microwave Reflectometry

    International Nuclear Information System (INIS)

    Two-dimensional full-wave time-dependent simulations in full plasma geometry are presented which show that conventional reflectometry (without a lens) can be used to synthetically image density fluctuations in fusion plasmas under conditions where the parallel correlation length greatly exceeds the poloidal correlation length of the turbulence. The advantage of synthetic imaging is that the image can be produced without the need for a large lens of high optical quality, and each frequency that is launched can be independently imaged. A particularly simple arrangement, consisting of a single receiver located at the midpoint of a microwave beam propagating along the plasma midplane is shown to suffice for imaging purposes. However, as the ratio of the parallel to poloidal correlation length decreases, a poloidal array of receivers needs to be used to synthesize the image with high accuracy. Simulations using DIII-D relevant parameters show the similarity of synthetic and optical imaging in present-day experiments

  10. Computer Aided Interpretation Approach for Optical Tomographic Images

    CERN Document Server

    Klose, Christian D; Netz, Uwe; Beuthan, Juergen; Hielscher, Andreas H

    2010-01-01

    A computer-aided interpretation approach is proposed to detect rheumatic arthritis (RA) of human finger joints in optical tomographic images. The image interpretation method employs a multi-variate signal detection analysis aided by a machine learning classification algorithm, called Self-Organizing Mapping (SOM). Unlike in previous studies, this allows for combining multiple physical image parameters, such as minimum and maximum values of the absorption coefficient for identifying affected and not affected joints. Classification performances obtained by the proposed method were evaluated in terms of sensitivity, specificity, Youden index, and mutual information. Different methods (i.e., clinical diagnostics, ultrasound imaging, magnet resonance imaging and inspection of optical tomographic images), were used as "ground truth"-benchmarks to determine the performance of image interpretations. Using data from 100 finger joints, findings suggest that some parameter combinations lead to higher sensitivities while...

  11. Simulation of Optical and Synthetic Imaging using Microwave Reflectometry

    Energy Technology Data Exchange (ETDEWEB)

    G.J. Kramer; R. Nazikian; E. Valeo

    2004-01-16

    Two-dimensional full-wave time-dependent simulations in full plasma geometry are presented which show that conventional reflectometry (without a lens) can be used to synthetically image density fluctuations in fusion plasmas under conditions where the parallel correlation length greatly exceeds the poloidal correlation length of the turbulence. The advantage of synthetic imaging is that the image can be produced without the need for a large lens of high optical quality, and each frequency that is launched can be independently imaged. A particularly simple arrangement, consisting of a single receiver located at the midpoint of a microwave beam propagating along the plasma midplane is shown to suffice for imaging purposes. However, as the ratio of the parallel to poloidal correlation length decreases, a poloidal array of receivers needs to be used to synthesize the image with high accuracy. Simulations using DIII-D relevant parameters show the similarity of synthetic and optical imaging in present-day experiments.

  12. Hemodynamic responses to functional activation accessed by optical imaging

    Science.gov (United States)

    Ni, Songlin; Li, Pengcheng; Yang, Yuanyuan; Lv, Xiaohua; Luo, Qingming

    2006-01-01

    A multi-wavelength light-emitting diode (LED) and laser diode (LD) based optical imaging system was developed to visualize the changes in cerebral blood flow, oxygenation following functional activation simultaneously in rodent cortex. The 2-D blood flow image was accessed by laser speckle contrast imaging, and the spectroscopic imaging of intrinsic signal was used for the calculation of oxyhemoglobin (HbO), deoxyhemoglobin (Hb) and total hemoglobin (HbT) concentration. The combination of spectroscopic imaging and laser speckle contrast imaging provides the capability to simultaneously investigate the spatial and temporal blood flow and hemoglobin concentration changes with high resolution, which may lead to a better understanding of the coupling between neuronal activation and vascular responses. The optical imaging system been built is compact and convenient to investigators. And it is reliable to acquire raw data. In present study, the hemodynamic responses to cortical spreading depression (CSD) in parietal cortex of ~-chloralose/urethan anesthetized rats were demonstrated.

  13. Design of photoelectronic optical image sensors

    Science.gov (United States)

    Johnson, C. B.

    1973-01-01

    The main performance goals for the image sensors are given and the design criteria for accomplishing these goals are discussed. Each functional element of the image sensors is described along with the various tradeoffs considered.

  14. A method to estimate optical distortion using planetary images

    Science.gov (United States)

    Kouyama, Toru; Yamazaki, Atsushi; Yamada, Manabu; Imamura, Takeshi

    2013-09-01

    We developed a method to calibrate optical distortion parameters for axisymmetrical optical systems using images of a spherical target taken at a variety of distances. The method utilizes the fact that the influence of distortion on the apparent radius in the image changes with the disk size of the projected body. Because several planets can be used as the spherical target, this method enables us to obtain distortion parameters in space and by using a large number of planetary images, desired accuracy of parameters can be achieved statistically. The applicability of the method was tested by applying it to simulated planetary images and real Venus images taken by Venus Monitoring Camera onboard the ESA's Venus Express, and optical distortion was successfully retrieved with the pixel position error of less than 1 pixel. Venus is the planet most suitable for the proposed method because of its smooth, nearly spherical surface of the haze layer covering the planet.

  15. Optical analysis of miniature lenses with curved imaging surfaces.

    Science.gov (United States)

    Reshidko, Dmitry; Sasian, Jose

    2015-10-01

    Miniature cameras for consumer electronics and mobile phones have been, and continue to be, in fast development. The system level requirements, such as manufacturing cost, packaging, and sensor characteristics, impose unique challenges for optical designers. In this paper, we discuss the potential optical benefits of having a curved image surface rather than a flat one. We show that curved sensor technology allows for optically faster lens solutions. We discuss trade-offs of several relevant characteristics, such as packaging, chief ray angle, image quality, and tolerance sensitivity. A comparison of a benchmark flat field lens, and an evaluation design imaging on a curved surface and working at f/1.6, provides useful specific insights. For a given image quality, departing from a flat imaging surface does not allow significantly reducing the total length of a lens. PMID:26479656

  16. Optical Synchrotron Radiation Beam Imaging with a Digital Mask

    Energy Technology Data Exchange (ETDEWEB)

    Fiorito, R. B. [University of Maryland, College Park, MD (United States); Zhang, H. D. [University of Maryland, College Park, MD (United States); Corbett, W. J. [SLAC, Menlo Park, CA (United States); Fisher, A. S. [SLAC, Menlo Park, CA (United States); Mok, W. Y. [SLAC, Menlo Park, CA (United States); Tian, K. [SLAC, Menlo Park, CA (United States); Douglas, D. [Thomas Jefferson National Accelerator Facility, Newport News, VA (United States); Wilson, F. G. [Thomas Jefferson National Accelerator Facility, Newport News, VA (United States); Zhang, S. [Thomas Jefferson National Accelerator Facility, Newport News, VA (United States); Mitsuhashi, T. M. [KEK, Tsukuba (Japan); Shkvarunets, A. G. [University of Maryland, College Park, MD (United States)

    2012-11-01

    We have applied a new imaging/optical masking technique, which employs a digital micro-mirror device (DMD) and optical synchrotron radiation (OSR), to perform high dynamic range (DR) beam imaging at the JLAB Energy Recovery Linac and the SLAC/SPEAR3 Synchrotron Light Source. The OSR from the beam is first focused onto the DMD to produce a primary image; selected areas of this image are spatially filtered by controlling the state of individual micro-mirrors; and finally, the filtered image is refocused onto a CCD camera. At JLAB this technique has been used successfully to view the beam halo with a DR ~ 105. At SPEAR3 the DMD was used to filter out the bright core of the stored beam to study the turn-by-turn dynamics of the 10-3 weaker injected beam. We describe the optical performance, present limitations and our plans to improve the DR of both experimental systems.

  17. Potential of biological images for radiation therapy of cancer

    International Nuclear Information System (INIS)

    Full text: Recent technical advances in 3D conformal and intensity modulated radiotherapy (3DCRT and IMRT) based, on patient-specific CT and MRI images, have the potential of delivering exquisitely conformal dose distributions to the target volume while avoiding critical structures. Emerging clinical results in terms of reducing treatment-related morbidity and increasing local control appear promising. Recent developments in imaging have suggested that biological images may further positively impact cancer diagnosis, characterization and therapy. While in the past radiological images are largely anatomical, the new types of images can provide metabolic, biochemical, physiological, functional and molecular (genotypic and phenotypic) information. For radiation therapy, images that give information about factors (e.g. tumor hypoxia, Tpot) that influence radiosensitivity and treatment outcome can be regarded as radiobiological images. The ability of IMRT to 'paint' (in 2D) or 'sculpt' (in 3D) the dose, and produce exquisitely conformal dose distributions begs the '64 million dollar question' as to how to paint or sculpt, and whether biological imaging may provide the pertinent information. Can this new approach provide 'radiobiological phenotypes' non-invasively, and incrementally improve upon the predictive assays of radiobiological characteristics such as proliferative activity (Tpot - the potential doubling time), radiosensitivity (SF2 - the surviving fraction at a dose of 2 Gy), energy status (relative to sublethal damage repair), pH (a possible surrogate of hypoxia), tumor hypoxia, etc. as prognosticator(s) of radiation treatment outcome. Important for IMRT, the spatial (geometrical) distribution of the radiobiological phenotypes provide the basis for dose distribution design to conform to both the physical (geometrical) and the biological attributes. Copyright (2001) Australasian College of Physical Scientists and Engineers in Medicine

  18. Accuracy requirements of optical linear algebra processors in adaptive optics imaging systems.

    Science.gov (United States)

    Downie, J D; Goodman, J W

    1989-10-15

    A ground-based adaptive optics imaging telescope system attempts to improve image quality by measuring and correcting for atmospherically induced wavefront aberrations. The necessary control computations during each cycle will take a finite amount of time, which adds to the residual error variance since the atmosphere continues to change during that time. Thus an optical processor may be well-suited for this task. This paper investigates this possibility by studying the accuracy requirements in a general optical processor that will make it competitive with, or superior to, a conventional digital computer for adaptive optics use.

  19. New variational image decomposition model for simultaneously denoising and segmenting optical coherence tomography images

    Science.gov (United States)

    Duan, Jinming; Tench, Christopher; Gottlob, Irene; Proudlock, Frank; Bai, Li

    2015-11-01

    Optical coherence tomography (OCT) imaging plays an important role in clinical diagnosis and monitoring of diseases of the human retina. Automated analysis of optical coherence tomography images is a challenging task as the images are inherently noisy. In this paper, a novel variational image decomposition model is proposed to decompose an OCT image into three components: the first component is the original image but with the noise completely removed; the second contains the set of edges representing the retinal layer boundaries present in the image; and the third is an image of noise, or in image decomposition terms, the texture, or oscillatory patterns of the original image. In addition, a fast Fourier transform based split Bregman algorithm is developed to improve computational efficiency of solving the proposed model. Extensive experiments are conducted on both synthesised and real OCT images to demonstrate that the proposed model outperforms the state-of-the-art speckle noise reduction methods and leads to accurate retinal layer segmentation.

  20. A biological phantom for evaluation of CT image reconstruction algorithms

    Science.gov (United States)

    Cammin, J.; Fung, G. S. K.; Fishman, E. K.; Siewerdsen, J. H.; Stayman, J. W.; Taguchi, K.

    2014-03-01

    In recent years, iterative algorithms have become popular in diagnostic CT imaging to reduce noise or radiation dose to the patient. The non-linear nature of these algorithms leads to non-linearities in the imaging chain. However, the methods to assess the performance of CT imaging systems were developed assuming the linear process of filtered backprojection (FBP). Those methods may not be suitable any longer when applied to non-linear systems. In order to evaluate the imaging performance, a phantom is typically scanned and the image quality is measured using various indices. For reasons of practicality, cost, and durability, those phantoms often consist of simple water containers with uniform cylinder inserts. However, these phantoms do not represent the rich structure and patterns of real tissue accurately. As a result, the measured image quality or detectability performance for lesions may not reflect the performance on clinical images. The discrepancy between estimated and real performance may be even larger for iterative methods which sometimes produce "plastic-like", patchy images with homogeneous patterns. Consequently, more realistic phantoms should be used to assess the performance of iterative algorithms. We designed and constructed a biological phantom consisting of porcine organs and tissue that models a human abdomen, including liver lesions. We scanned the phantom on a clinical CT scanner and compared basic image quality indices between filtered backprojection and an iterative reconstruction algorithm.

  1. Magneto-optical system for high speed real time imaging

    Science.gov (United States)

    Baziljevich, M.; Barness, D.; Sinvani, M.; Perel, E.; Shaulov, A.; Yeshurun, Y.

    2012-08-01

    A new magneto-optical system has been developed to expand the range of high speed real time magneto-optical imaging. A special source for the external magnetic field has also been designed, using a pump solenoid to rapidly excite the field coil. Together with careful modifications of the cryostat, to reduce eddy currents, ramping rates reaching 3000 T/s have been achieved. Using a powerful laser as the light source, a custom designed optical assembly, and a high speed digital camera, real time imaging rates up to 30 000 frames per seconds have been demonstrated.

  2. Ghost imaging for three-dimensional optical security

    International Nuclear Information System (INIS)

    Ghost imaging has become increasingly popular in quantum and optical application fields. Here, we report three-dimensional (3D) optical security using ghost imaging. The series of random phase-only masks are sparsified, which are further converted into particle-like distributions placed in 3D space. We show that either an optical or digital approach can be employed for the encoding. The results illustrate that a larger key space can be generated due to the application of 3D space compared with previous works

  3. Review on Matching Infrared Face Images to Optical Face Images using LBP

    Directory of Open Access Journals (Sweden)

    Kamakhaya Argulewar

    2014-12-01

    Full Text Available In biometric research and many security areas, it is very difficult task to match the images which is captured by different devices. Large gap exist between them because they relates with different classes. Matching optical face images to infrared face images is one of the difficult task in face biometric. Large difference exists between infrared and optical face images because they belong to multiple classes. Converting the samples of multimodality into common feature space is the main objective of this project. Different class of images is relating by coordinating separate feature for classes .It is mainly used in heterogeneous face recognition. The new method has been developing for identification of heterogeneous face identification. Training set contains the images from different modalities. Initially the infrared image is preprocessed by applying Gaussian filter, difference of Gaussian and CSDN filters are apply on infrared face image. After preprocessing next step to extracting the feature by using LBP(local binary pattern feature extraction then relevance machine classifier is used to identify the best matching optical image from the corresponding infrared images from the optical images dataset. By processing this technique our system efficiently match the infrared and optical face images.

  4. A General Epipolar-Line Model between Optical and SAR Images and Used in Image Matching

    Directory of Open Access Journals (Sweden)

    Shuai Xing

    2014-02-01

    Full Text Available The search space and strategy are important for optical and SAR image matching. In this paper a general epipolar-line model has been proposed between linear array push-broom optical and SAR images. Then a dynamic approximate epipolar-line constraint model (DAELCM has been constructed and used to construct a new image matching algorithm with Harris operator and CRA. Experimental results have shown that the general epipolar-line model is valid and successfully used in optical and SAR image matching, and effectively limits the search space and decreased computation.

  5. The image registration of multi-band images by geometrical optics

    Science.gov (United States)

    Yan, Yung-Jhe; Chiang, Hou-Chi; Tsai, Yu-Hsiang; Huang, Ting-Wei; Mang, Ou-Yang

    2015-09-01

    The image fusion is combination of two or more images into one image. The fusion of multi-band spectral images has been in many applications, such as thermal system, remote sensing, medical treatment, etc. Images are taken with the different imaging sensors. If the sensors take images through the different optical paths in the same time, it will be in the different positions. The task of the image registration will be more difficult. Because the images are in the different field of views (F.O.V.), the different resolutions and the different view angles. It is important to build the relationship of the viewpoints in one image to the other image. In this paper, we focus on the problem of image registration for two non-pinhole sensors. The affine transformation between the 2-D image and the 3-D real world can be derived from the geometrical optics of the sensors. In the other word, the geometrical affine transformation function of two images are derived from the intrinsic and extrinsic parameters of two sensors. According to the affine transformation function, the overlap of the F.O.V. in two images can be calculated and resample two images in the same resolution. Finally, we construct the image registration model by the mapping function. It merges images for different imaging sensors. And, imaging sensors absorb different wavebands of electromagnetic spectrum at the different position in the same time.

  6. Optical image encryption based on multifractional Fourier transforms.

    Science.gov (United States)

    Zhu, B; Liu, S; Ran, Q

    2000-08-15

    We propose a new image encryption algorithm based on a generalized fractional Fourier transform, to which we refer as a multifractional Fourier transform. We encrypt the input image simply by performing the multifractional Fourier transform with two keys. Numerical simulation results are given to verify the algorithm, and an optical implementation setup is also suggested. PMID:18066153

  7. MICADO : The E-ELT adaptive optics imaging camera

    NARCIS (Netherlands)

    Davies, Richard; Ageorges, N.; Barl, L.; Bedin, L. R.; Bender, R.; Bernardi, P.; Chapron, F.; Clenet, Y.; Deep, A.; Deul, E.; Drost, M.; Eisenhauer, F.; Falomo, R.; Fiorentino, G.; Förster Schreiber, N. M.; Gendron, E.; Genzel, R.; Gratadour, D.; Greggio, L.; Grupp, F.; Held, E.; Herbst, T.; Hess, H.-J.; Hubert, Z.; Jahnke, K.; Kuijken, K.; Lutz, D.; Magrin, D.; Muschielok, B.; Navarro, R.; Noyola, E.; Paumard, T.; Piotto, G.; Ragazzoni, R.; Renzini, A.; Rousset, G.; Rix, H.-W.; Saglia, R.; Tacconi, L.; Thiel, M.; Tolstoy, E.; Trippe, S.; Tromp, N.; Valentijn, E. A.; Verdoes Kleijn, G.; Wegner, M.; McLean, I.S.; Ramsay, S.K.; Takami, H.

    2010-01-01

    MICADO is the adaptive optics imaging camera for the E-ELT. It has been designed and optimised to be mounted to the LGS-MCAO system MAORY, and will provide diffraction limited imaging over a wide (~1 arcmin) field of view. For initial operations, it can also be used with its own simpler AO module th

  8. Compensating focusing for space hyper spectral imager's fore optical system

    Institute of Scientific and Technical Information of China (English)

    Yicha Zhang; Wei Liu

    2011-01-01

    @@ The performance of space hyper spectral imager is severely affected by turbulent orbit temperature. Turbulence results in a defocus in the fore optical system of the imager. To address this problem, a focusing system is added. A number of simulation methods are applied on the fore optical system to study the relationship between temperature and focusing. In addition, this process is conducted to obtain a practical reference for focusing while the imager is flying on orbit. The obtained correlation between focusing and temperature is proven effective based on ground imaging and simulation testing.%The performance of space hyper spectral imager is severely affected by turbulent orbit temperature. Turbulence results in a defocus in the fore optical system of the imager. To address this problem, a focusing system is added. A number of simulation methods are applied on the fore optical system to study the relationship between temperature and focusing. In addition, this process is conducted to obtain a practical reference for focusing while the imager is flying on orbit. The obtained correlation between focusing and temperature is proven effective based on ground imaging and simulation testing.

  9. Compact low-cost detection electronics for optical coherence imaging

    OpenAIRE

    Akcay, A. C.; Lee, K. S.; Furenlid, L.R.; Costa, M A; Rolland, J.P.

    2006-01-01

    A compact and low-cost detection electronics scheme for optical coherence imaging is demonstrated. The performance of the designed electronics is analyzed in comparison to a commercial lock-in amplifier of equal bandwidth. Images of a fresh-onion sample are presented for each detection configuration.

  10. Fast optical measurements and imaging of flow mixing

    DEFF Research Database (Denmark)

    Clausen, Sønnik; Fateev, Alexander; Nielsen, Karsten Lindorff;

    in combustion enhancement can be also obtained. The infrared camera was also used together with special endoscope optics for fast thermal imaging of a coal-straw flame in an industrial boiler. Obtained time-resolved infrared images provided useful information for the diagnostics of the flame and fuel...

  11. Ultrasound-modulated optical tomography for thick tissue imaging

    Science.gov (United States)

    Wang, Lihong V.; Zhao, Xuemei; Jacques, Steven L.

    1995-12-01

    Continuous-wave ultrasonic modulation of scattered laser light has been used to image objects in tissue-simulating turbid media for the first time. We hypothesize that the ultrasound wave focused into the turbid media modulates the laser light passing through the ultrasonic focal spot. The modulated laser light collected by a photomultiplier tube reflects the local mechanical and optical properties in the focal zone. Buried objects in 5-cm thick tissue phantoms are located with millimeter resolution by scanning and detecting alterations of the ultrasound-modulated optical signal. Ultrasound-modulated optical tomography separates the conflict between signal and resolution in purely optical imaging of tissue and does not rely on ballistic or quasi-ballistic photons but on the abundant diffuse photons. The imaging resolution is determined by the focused ultrasonic wave. This technique has the potential to provide a noninvasive, nonionizing, inexpensive diagnostic tool for diseases such as breast cancer.

  12. Integration of optical imaging with a small animal irradiator

    International Nuclear Information System (INIS)

    Purpose: The authors describe the integration of optical imaging with a targeted small animal irradiator device, focusing on design, instrumentation, 2D to 3D image registration, 2D targeting, and the accuracy of recovering and mapping the optical signal to a 3D surface generated from the cone-beam computed tomography (CBCT) imaging. The integration of optical imaging will improve targeting of the radiation treatment and offer longitudinal tracking of tumor response of small animal models treated using the system. Methods: The existing image-guided small animal irradiator consists of a variable kilovolt (peak) x-ray tube mounted opposite an aSi flat panel detector, both mounted on a c-arm gantry. The tube is used for both CBCT imaging and targeted irradiation. The optical component employs a CCD camera perpendicular to the x-ray treatment/imaging axis with a computer controlled filter for spectral decomposition. Multiple optical images can be acquired at any angle as the gantry rotates. The optical to CBCT registration, which uses a standard pinhole camera model, was modeled and tested using phantoms with markers visible in both optical and CBCT images. Optically guided 2D targeting in the anterior/posterior direction was tested on an anthropomorphic mouse phantom with embedded light sources. The accuracy of the mapping of optical signal to the CBCT surface was tested using the same mouse phantom. A surface mesh of the phantom was generated based on the CBCT image and optical intensities projected onto the surface. The measured surface intensity was compared to calculated surface for a point source at the actual source position. The point-source position was also optimized to provide the closest match between measured and calculated intensities, and the distance between the optimized and actual source positions was then calculated. This process was repeated for multiple wavelengths and sources. Results: The optical to CBCT registration error was 0.8 mm. Two

  13. Integration of optical imaging with a small animal irradiator

    Energy Technology Data Exchange (ETDEWEB)

    Weersink, Robert A., E-mail: robert.weersink@rmp.uhn.on.ca [Radiation Medicine Program, Princess Margaret Hospital, 610 University Avenue, Toronto, Ontario M5G 2M9, Canada and Techna Institute, University Health Network, 124-100 College Street, Toronto, Ontario M5G 1P5 (Canada); Ansell, Steve; Wang, An; Wilson, Graham [Radiation Medicine Program, Princess Margaret Hospital, 610 University Avenue, Toronto, Ontario M5G 2M9 (Canada); Shah, Duoaud [Techna Institute, University Health Network, 124-100 College Street, Toronto, Ontario M5G 1P5 (Canada); Lindsay, Patricia E. [Radiation Medicine Program, Princess Margaret Hospital, 610 University Avenue, Toronto, Ontario M5G 2M9, Canada and Department of Radiation Oncology, University of Toronto, Toronto, Ontario M5S 1A1 (Canada); Jaffray, David A. [Radiation Medicine Program, Princess Margaret Hospital, 610 University Avenue, Toronto, Ontario M5G 2M9 (Canada); Techna Institute, University Health Network, 124-100 College Street, Toronto, Ontario M5G 1P5 (Canada); Department of Radiation Oncology, University of Toronto, Toronto, Ontario M5S 1A1 (Canada); Ontario Cancer Institute, Princess Margaret Hospital, 610 University Avenue, Toronto, Ontario M5G 2M9 (Canada); Department of Medical Biophysics, University of Toronto, Toronto, Ontario M5S 1A1 (Canada)

    2014-10-15

    Purpose: The authors describe the integration of optical imaging with a targeted small animal irradiator device, focusing on design, instrumentation, 2D to 3D image registration, 2D targeting, and the accuracy of recovering and mapping the optical signal to a 3D surface generated from the cone-beam computed tomography (CBCT) imaging. The integration of optical imaging will improve targeting of the radiation treatment and offer longitudinal tracking of tumor response of small animal models treated using the system. Methods: The existing image-guided small animal irradiator consists of a variable kilovolt (peak) x-ray tube mounted opposite an aSi flat panel detector, both mounted on a c-arm gantry. The tube is used for both CBCT imaging and targeted irradiation. The optical component employs a CCD camera perpendicular to the x-ray treatment/imaging axis with a computer controlled filter for spectral decomposition. Multiple optical images can be acquired at any angle as the gantry rotates. The optical to CBCT registration, which uses a standard pinhole camera model, was modeled and tested using phantoms with markers visible in both optical and CBCT images. Optically guided 2D targeting in the anterior/posterior direction was tested on an anthropomorphic mouse phantom with embedded light sources. The accuracy of the mapping of optical signal to the CBCT surface was tested using the same mouse phantom. A surface mesh of the phantom was generated based on the CBCT image and optical intensities projected onto the surface. The measured surface intensity was compared to calculated surface for a point source at the actual source position. The point-source position was also optimized to provide the closest match between measured and calculated intensities, and the distance between the optimized and actual source positions was then calculated. This process was repeated for multiple wavelengths and sources. Results: The optical to CBCT registration error was 0.8 mm. Two

  14. Digital image compression for a 2f multiplexing optical setup

    Science.gov (United States)

    Vargas, J.; Amaya, D.; Rueda, E.

    2016-07-01

    In this work a virtual 2f multiplexing system was implemented in combination with digital image compression techniques and redundant information elimination. Depending on the image type to be multiplexed, a memory-usage saving of as much as 99% was obtained. The feasibility of the system was tested using three types of images, binary characters, QR codes, and grey level images. A multiplexing step was implemented digitally, while a demultiplexing step was implemented in a virtual 2f optical setup following real experimental parameters. To avoid cross-talk noise, each image was codified with a specially designed phase diffraction carrier that would allow the separation and relocation of the multiplexed images on the observation plane by simple light propagation. A description of the system is presented together with simulations that corroborate the method. The present work may allow future experimental implementations that will make use of all the parallel processing capabilities of optical systems.

  15. Sensitivity of synthetic aperture laser optical feedback imaging

    CERN Document Server

    Glastre, Wilfried; Jacquin, Olivier; Hugon, Olivier; De Chatellus, Hugues Guillet

    2012-01-01

    In this paper we compare the sensitivity of two imaging configurations both based on Laser Optical Feedback Imaging (LOFI). The first one is direct imaging, which uses conventional optical focalisation on target and the second one is made by Synthetic Aperture (SA) Laser, which uses numerical focalisation. We show that SA configuration allows to obtain good resolutions with high working distance and that the drawback of SA imagery is that it has a worse photometric balance in comparison to conventional microscope. This drawback is partially compensated by the important sensitivity of LOFI. Another interest of SA relies on the capacity of getting a 3D information in a single x-y scan.

  16. Specifying and controlling the optical image on the human retina.

    OpenAIRE

    Westheimer, Gerald

    2006-01-01

    A review covering the trends that led to the current state of knowledge in the areas of: (a) schematic models of the eye, and the definition of the retinal image in terms of first-order optics; (b) the description of the actual image on the retina and methods for accessing and characterizing it; (c) available procedures for controlling the quality of the retinal image in defined situations; and (d) intra-receptoral optical effects that cause differences between the light distribution on the r...

  17. Time-gated optical imaging through turbid media using stimulated Raman scattering: Studies on image contrast

    Indian Academy of Sciences (India)

    K Divakar Rao; H S Patel; B Jain; P K Gupta

    2005-02-01

    In this paper, we report the development of experimental set-up for timegated optical imaging through turbid media using stimulated Raman scattering. Our studies on the contrast of time-gated images show that for a given optical thickness, the image contrast is better for sample with lower scattering coefficient and higher physical thickness, and that the contrast improves with decreasing value of anisotropy parameters of the scatterers. These results are consistent with time-resolved Monte Carlo simulations.

  18. A novel non-imaging optics based Raman spectroscopy device for transdermal blood analyte measurement

    OpenAIRE

    Chae-Ryon Kong; Ishan Barman; Narahara Chari Dingari; Jeon Woong Kang; Luis Galindo; Dasari, Ramachandra R.; Feld, Michael S.

    2011-01-01

    Due to its high chemical specificity, Raman spectroscopy has been considered to be a promising technique for non-invasive disease diagnosis. However, during Raman excitation, less than one out of a million photons undergo spontaneous Raman scattering and such weakness in Raman scattered light often require highly efficient collection of Raman scattered light for the analysis of biological tissues. We present a novel non-imaging optics based portable Raman spectroscopy instrument designed for ...

  19. Optical image hiding based on computational ghost imaging

    Science.gov (United States)

    Wang, Le; Zhao, Shengmei; Cheng, Weiwen; Gong, Longyan; Chen, Hanwu

    2016-05-01

    Imaging hiding schemes play important roles in now big data times. They provide copyright protections of digital images. In the paper, we propose a novel image hiding scheme based on computational ghost imaging to have strong robustness and high security. The watermark is encrypted with the configuration of a computational ghost imaging system, and the random speckle patterns compose a secret key. Least significant bit algorithm is adopted to embed the watermark and both the second-order correlation algorithm and the compressed sensing (CS) algorithm are used to extract the watermark. The experimental and simulation results show that the authorized users can get the watermark with the secret key. The watermark image could not be retrieved when the eavesdropping ratio is less than 45% with the second-order correlation algorithm, whereas it is less than 20% with the TVAL3 CS reconstructed algorithm. In addition, the proposed scheme is robust against the 'salt and pepper' noise and image cropping degradations.

  20. Application of optical coherence tomography based microangiography for cerebral imaging

    Science.gov (United States)

    Baran, Utku; Wang, Ruikang K.

    2016-03-01

    Requirements of in vivo rodent brain imaging are hard to satisfy using traditional technologies such as magnetic resonance imaging and two-photon microscopy. Optical coherence tomography (OCT) is an emerging tool that can easily reach at high speeds and provide high resolution volumetric images with a relatively large field of view for rodent brain imaging. Here, we provide the overview of recent developments of functional OCT based imaging techniques for neuroscience applications on rodents. Moreover, a summary of OCT-based microangiography (OMAG) studies for stroke and traumatic brain injury cases on rodents are provided.

  1. Scalable multiplexing for parallel imaging with interleaved optical coherence tomography

    OpenAIRE

    Lee, Hee Yoon; Marvdashti, Tahereh; Duan, Lian; Khan, Saara A.; Ellerbee, Audrey K.

    2014-01-01

    We demonstrate highly parallel imaging with interleaved optical coherence tomography (iOCT) using an in-house-fabricated, air-spaced virtually-imaged phased array (VIPA). The air-spaced VIPA performs spectral encoding of the interferograms from multiple lateral points within a single sweep of the source and allows us to tune and balance several imaging parameters: number of multiplexed points, ranging depth, and sensitivity. In addition to a thorough discussion of the parameters and operating...

  2. Endoscopic Optical Coherence Tomography (OCT: Advances in Gastrointestinal Imaging

    Directory of Open Access Journals (Sweden)

    Tejas S. Kirtane

    2014-01-01

    Full Text Available In the rapidly evolving field of endoscopic gastrointestinal imaging, Optical Coherence Tomography (OCT has found many diverse applications. We present the current status of OCT and its practical applications in imaging normal and abnormal mucosa in the esophagus, stomach, small and large intestines, and biliary and pancreatic ducts. We highlight technical aspects and principles of imaging, assess published data, and suggest future directions for OCT-guided evaluation and therapy.

  3. Large Scale 3D Image Reconstruction in Optical Interferometry

    CERN Document Server

    Schutz, Antony; Mary, David; Thiébaut, Eric; Soulez, Ferréol

    2015-01-01

    Astronomical optical interferometers (OI) sample the Fourier transform of the intensity distribution of a source at the observation wavelength. Because of rapid atmospheric perturbations, the phases of the complex Fourier samples (visibilities) cannot be directly exploited , and instead linear relationships between the phases are used (phase closures and differential phases). Consequently, specific image reconstruction methods have been devised in the last few decades. Modern polychromatic OI instruments are now paving the way to multiwavelength imaging. This paper presents the derivation of a spatio-spectral ("3D") image reconstruction algorithm called PAINTER (Polychromatic opticAl INTErferometric Reconstruction software). The algorithm is able to solve large scale problems. It relies on an iterative process, which alternates estimation of polychromatic images and of complex visibilities. The complex visibilities are not only estimated from squared moduli and closure phases, but also from differential phase...

  4. Stochastic Optics: A Scattering Mitigation Framework for Radio Interferometric Imaging

    CERN Document Server

    Johnson, Michael D

    2016-01-01

    Just as turbulence in the Earth's atmosphere can severely limit the angular resolution of optical telescopes, turbulence in the ionized interstellar medium fundamentally limits the resolution of radio telescopes. We present a scattering mitigation framework for radio imaging with very long baseline interferometry (VLBI) that partially overcomes this limitation. Our framework, "stochastic optics," derives from a simplification of strong interstellar scattering to separate small-scale ("diffractive") effects from large-scale ("refractive") effects, thereby separating deterministic and random contributions to the scattering. Stochastic optics extends traditional synthesis imaging by simultaneously reconstructing an unscattered image and its refractive perturbations. Its advantages over direct imaging come from utilizing the many deterministic properties of the scattering -- such as the time-averaged "blurring," polarization independence, and the deterministic evolution in frequency and time -- while still accoun...

  5. High-resolution in-depth imaging of optically cleared thick samples using an adaptive SPIM

    Science.gov (United States)

    Masson, Aurore; Escande, Paul; Frongia, Céline; Clouvel, Grégory; Ducommun, Bernard; Lorenzo, Corinne

    2015-11-01

    Today, Light Sheet Fluorescence Microscopy (LSFM) makes it possible to image fluorescent samples through depths of several hundreds of microns. However, LSFM also suffers from scattering, absorption and optical aberrations. Spatial variations in the refractive index inside the samples cause major changes to the light path resulting in loss of signal and contrast in the deepest regions, thus impairing in-depth imaging capability. These effects are particularly marked when inhomogeneous, complex biological samples are under study. Recently, chemical treatments have been developed to render a sample transparent by homogenizing its refractive index (RI), consequently enabling a reduction of scattering phenomena and a simplification of optical aberration patterns. One drawback of these methods is that the resulting RI of cleared samples does not match the working RI medium generally used for LSFM lenses. This RI mismatch leads to the presence of low-order aberrations and therefore to a significant degradation of image quality. In this paper, we introduce an original optical-chemical combined method based on an adaptive SPIM and a water-based clearing protocol enabling compensation for aberrations arising from RI mismatches induced by optical clearing methods and acquisition of high-resolution in-depth images of optically cleared complex thick samples such as Multi-Cellular Tumour Spheroids.

  6. Implied Movement in Static Images Reveals Biological Timing Processing

    Directory of Open Access Journals (Sweden)

    Francisco Carlos Nather

    2015-08-01

    Full Text Available Visual perception is adapted toward a better understanding of our own movements than those of non-conspecifics. The present study determined whether time perception is affected by pictures of different species by considering the evolutionary scale. Static (“S” and implied movement (“M” images of a dog, cheetah, chimpanzee, and man were presented to undergraduate students. S and M images of the same species were presented in random order or one after the other (S-M or M-S for two groups of participants. Movement, Velocity, and Arousal semantic scales were used to characterize some properties of the images. Implied movement affected time perception, in which M images were overestimated. The results are discussed in terms of visual motion perception related to biological timing processing that could be established early in terms of the adaptation of humankind to the environment.

  7. Diffusion MR Imaging of Postoperative Bilateral Acute Ischemic Optic Neuropathy

    Energy Technology Data Exchange (ETDEWEB)

    Kannan, Anusha; Srinivasan, Sivasubramanian [Khoo Teck Puat Hospital, Singapore (Singapore)

    2012-09-15

    We read with great interest, the case report on ischemic optic neuropathy (1). We would like to add a few points concerning the blood supply of the optic nerve and the correlation with the development of post-operative ischemic neuropathy. Actually, the perioperative or post-operative vision loss (postoperative ischemic neuropathy) is most likely due to ischemic optic neuropathy. Ischemic optic neuropathy (2) is classified as an anterior ischemic optic neuropathy (AION) and posterior ischemic optic neuropathy (PION). This classification is based on the fact that blood supply (2) to the anterior segment of the optic nerve (part of the optic nerve in the scleral canal and the optic disc) is supplied by short posterior ciliary vessels or anastamotic ring branches around the optic nerve. The posterior part of the optic canal is relatively less perfused, and is supplied by ophthalmic artery and central fibres are perfused by a central retinal artery. So, in the post-operative period, the posterior part of the optic nerve is more vulnerable for ischemia, especially, after major surgeries (3), one of the theories being hypotension or anaemia (2) and resultant decreased perfusion. The onset of PION is slower than the anterior ischemic optic neuropathy. AION on the other hand, is usually spontaneous (idiopathic) or due to arteritis, and is usually sudden in its onset. The reported case is most likely a case of PION. The role of imaging, especially the diffusion weighted magnetic resonance imaging, is very important because the ophthalmoscopic findings in early stages of PION is normal, and it may delay the diagnosis. On the other hand, edema of the disc is usually seen in the early stages of AION.

  8. Predictive spectroscopy and chemical imaging based on novel optical systems

    Science.gov (United States)

    Nelson, Matthew Paul

    1998-10-01

    This thesis describes two futuristic optical systems designed to surpass contemporary spectroscopic methods for predictive spectroscopy and chemical imaging. These systems are advantageous to current techniques in a number of ways including lower cost, enhanced portability, shorter analysis time, and improved S/N. First, a novel optical approach to predicting chemical and physical properties based on principal component analysis (PCA) is proposed and evaluated. A regression vector produced by PCA is designed into the structure of a set of paired optical filters. Light passing through the paired filters produces an analog detector signal directly proportional to the chemical/physical property for which the regression vector was designed. Second, a novel optical system is described which takes a single-shot approach to chemical imaging with high spectroscopic resolution using a dimension-reduction fiber-optic array. Images are focused onto a two- dimensional matrix of optical fibers which are drawn into a linear distal array with specific ordering. The distal end is imaged with a spectrograph equipped with an ICCD camera for spectral analysis. Software is used to extract the spatial/spectral information contained in the ICCD images and deconvolute them into wave length-specific reconstructed images or position-specific spectra which span a multi-wavelength space. This thesis includes a description of the fabrication of two dimension-reduction arrays as well as an evaluation of the system for spatial and spectral resolution, throughput, image brightness, resolving power, depth of focus, and channel cross-talk. PCA is performed on the images by treating rows of the ICCD images as spectra and plotting the scores of each PC as a function of reconstruction position. In addition, iterative target transformation factor analysis (ITTFA) is performed on the spectroscopic images to generate ``true'' chemical maps of samples. Univariate zero-order images, univariate first

  9. Electro-Optical Imaging Microscopy of Dye-Doped Artificial Lipidic Membranes

    Science.gov (United States)

    Hajj, Bassam; De Reguardati, Sophie; Hugonin, Loïc; Le Pioufle, Bruno; Osaki, Toshihisa; Suzuki, Hiroaki; Takeuchi, Shoji; Mojzisova, Halina; Chauvat, Dominique; Zyss, Joseph

    2009-01-01

    Artificial lipidic bilayers are widely used as a model for the lipid matrix in biological cell membranes. We use the Pockels electro-optical effect to investigate the properties of an artificial lipidic membrane doped with nonlinear molecules in the outer layer. We report here what is believed to be the first electro-optical Pockels signal and image from such a membrane. The electro-optical dephasing distribution within the membrane is imaged and the signal is shown to be linear as a function of the applied voltage. A theoretical analysis taking into account the statistical orientation distribution of the inserted dye molecules allows us to estimate the doped membrane nonlinearity. Ongoing extensions of this work to living cell membranes are discussed. PMID:19948120

  10. Ultrathin Optics for Low-Profile Innocuous Imager

    Energy Technology Data Exchange (ETDEWEB)

    Boye, Robert R. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Photonic Microsystems Technologies; Brady, Gregory Robert [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Photonic Microsystems Technologies; Nelson, Cynthia Lee [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Systems Engineering I; Briggs, Ronald D. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Integrated Microdevice Systems; Jared, Bradley Howell [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Advanced Prototyping S& T; Warren, Mial E. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Microsystems Partnerships

    2009-09-01

    This project demonstrates the feasibility of a novel imager with a thickness measured in microns rather than inches. Traditional imaging systems, i.e. cameras, cannot provide both the necessary resolution and innocuous form factor required in many data acquisition applications. Designing an imaging system with an extremely thin form factor (less than 1 mm) immediately presents several technical challenges. For instance, the thickness of the optical lens must be reduced drastically from currently available lenses. Additionally, the image circle is reduced by a factor equal to the reduction in focal length. This translates to fewer detector pixels across the image. To reduce the optical total track requires the use of specialized micro-optics and the required resolution necessitates the use of a new imaging modality. While a single thin imager will not produce the desired output, several thin imagers can be multiplexed and their low resolution (LR) outputs used together in post-processing to produce a high resolution (HR) image. The utility of an Iterative Back Projection (IBP) algorithm has been successfully demonstrated for performing the required post-processing. Advanced fabrication of a thin lens was also demonstrated and experimental results using this lens as well as commercially available lenses are presented.

  11. Laser-matter structuration of optical and biological materials

    Energy Technology Data Exchange (ETDEWEB)

    Hallo, L., E-mail: hallo@celia.u-bordeaux1.fr [CELIA, Universite Bordeaux 1 (France); Mezel, C., E-mail: candice.mezel@cea.fr [CELIA, Universite Bordeaux 1 (France); CEA Le Ripault, 37260 Monts (France); Guillemot, F., E-mail: fabien.guillemot@inserm.fr [UMR 577 INSERM, Universite Bordeaux 2 (France); Chimier, B., E-mail: chimier@celia.u-bordeaux1.fr [CELIA, Universite Bordeaux 1 (France); Bourgeade, A., E-mail: antoine.bourgeade@cea.fr [CEA-CESTA, Le Barp (France); Regan, C., E-mail: regan@celia.u-bordeaux1.fr [CELIA, Universite Bordeaux 1 (France); Duchateau, G., E-mail: duchateau@celia.u-bordeaux1.fr [CELIA, Universite Bordeaux 1 (France); Souquet, A., E-mail: agnes.souquet@inserm.fr [UMR 577 INSERM, Universite Bordeaux 2 (France); Hebert, D., E-mail: david.hebert@cea.fr [CEA-CESTA, Le Barp (France)

    2012-09-15

    Highlights: Black-Right-Pointing-Pointer In this study we model nanomaterial structuring. Black-Right-Pointing-Pointer The laser energy deposition is discussed first. Black-Right-Pointing-Pointer Full and approximate models are discussed. Black-Right-Pointing-Pointer Dynamic material response is addressed via hydrodynamics. Black-Right-Pointing-Pointer Sild effects are accounted for - Abstract: Interaction of ultrafast laser, i.e. from the femtosecond (fs) to the nanosecond (ns) regime, with initially transparent matter may produce very high energy density hot spots in the bulk as well as at the material surface, depending on focusing conditions. In the fs regime, absorption is due to ionisation of the dielectric, which enables absorption process to begin, and then hydrodynamic to take place. In the ns regime both absorption and hydrodynamic are coupled to each other, which complexifies considerably the comprehension but matter structuration looks similar. A numerical tool including solution of 3D Maxwell equations and a rate equation for free electrons is first compared to some available simple models of laser energy absorption. Then, subsequent material deformation, i.e. structuration, is determined by solving hydrodynamic equations, including or not solid behaviour. We show that nature of the final structures strongly depends on the amount of deposited energy and on the shape of the absorption zone. Then we address some problems related to laser-matter structuration of optical and biological materials in the fs, ps and ns regimes.

  12. Red emitting neutral fluorescent glycoconjugates for membrane optical imaging.

    Science.gov (United States)

    Redon, Sébastien; Massin, Julien; Pouvreau, Sandrine; De Meulenaere, Evelien; Clays, Koen; Queneau, Yves; Andraud, Chantal; Girard-Egrot, Agnès; Bretonnière, Yann; Chambert, Stéphane

    2014-04-16

    A family of neutral fluorescent probes was developed, mimicking the overall structure of natural glycolipids in order to optimize their membrane affinity. Nonreducing commercially available di- or trisaccharidic structures were connected to a push-pull chromophore based on dicyanoisophorone electron-accepting group, which proved to fluoresce in the red region with a very large Stokes shift. This straightforward synthetic strategy brought structural variations to a series of probes, which were studied for their optical, biophysical, and biological properties. The insertion properties of the different probes into membranes were evaluated on a model system using the Langmuir monolayer balance technique. Confocal fluorescence microscopy performed on muscle cells showed completely different localizations and loading efficiencies depending on the structure of the probes. When compared to the commercially available ANEPPS, a family of commonly used membrane imaging dyes, the most efficient probes showed a similar brightness, but a sharper pattern was observed. According to this study, compounds bearing one chromophore, a limited size of the carbohydrate moiety, and an overall rod-like shape gave the best results.

  13. Ex vivo imaging of human thyroid pathology using integrated optical coherence tomography and optical coherence microscopy

    Science.gov (United States)

    Zhou, Chao; Wang, Yihong; Aguirre, Aaron D.; Tsai, Tsung-Han; Cohen, David W.; Connolly, James L.; Fujimoto, James G.

    2010-01-01

    We evaluate the feasibility of optical coherence tomography (OCT) and optical coherence microscopy (OCM) for imaging of benign and malignant thyroid lesions ex vivo using intrinsic optical contrast. 34 thyroid gland specimens are imaged from 17 patients, covering a spectrum of pathology ranging from normal thyroid to benign disease/neoplasms (multinodular colloid goiter, Hashimoto's thyroiditis, and follicular adenoma) and malignant thyroid tumors (papillary carcinoma and medullary carcinoma). Imaging is performed using an integrated OCT and OCM system, with papillary architecture, microfollicules, psammomatous calcifications, or replacement of normal follicular architecture with sheets/nests of tumor cells, can be identified from OCT and OCM images and are clearly differentiable from normal or benign thyroid tissues. With further development of needle-based imaging probes, OCT and OCM could be promising techniques to use for the screening of thyroid nodules and to improve the diagnostic specificity of fine needle aspiration evaluation.

  14. Diffractive optical element for creating visual 3D images.

    Science.gov (United States)

    Goncharsky, Alexander; Goncharsky, Anton; Durlevich, Svyatoslav

    2016-05-01

    A method is proposed to compute and synthesize the microrelief of a diffractive optical element to produce a new visual security feature - the vertical 3D/3D switch effect. The security feature consists in the alternation of two 3D color images when the diffractive element is tilted up/down. Optical security elements that produce the new security feature are synthesized using electron-beam technology. Sample optical security elements are manufactured that produce 3D to 3D visual switch effect when illuminated by white light. Photos and video records of the vertical 3D/3D switch effect of real optical elements are presented. The optical elements developed can be replicated using standard equipment employed for manufacturing security holograms. The new optical security feature is easy to control visually, safely protected against counterfeit, and designed to protect banknotes, documents, ID cards, etc. PMID:27137530

  15. Reticle defect sizing of optical proximity correction defects using SEM imaging and image analysis techniques

    Science.gov (United States)

    Zurbrick, Larry S.; Wang, Lantian; Konicek, Paul; Laird, Ellen R.

    2000-07-01

    Sizing of programmed defects on optical proximity correction (OPC) feature sis addressed using high resolution scanning electron microscope (SEM) images and image analysis techniques. A comparison and analysis of different sizing methods is made. This paper addresses the issues of OPC defect definition and discusses the experimental measurement results obtained by SEM in combination with image analysis techniques.

  16. Development of Biological Movement Recognition by Interaction between Active Basis Model and Fuzzy Optical Flow Division

    Directory of Open Access Journals (Sweden)

    Bardia Yousefi

    2014-01-01

    Full Text Available Following the study on computational neuroscience through functional magnetic resonance imaging claimed that human action recognition in the brain of mammalian pursues two separated streams, that is, dorsal and ventral streams. It follows up by two pathways in the bioinspired model, which are specialized for motion and form information analysis (Giese and Poggio 2003. Active basis model is used to form information which is different from orientations and scales of Gabor wavelets to form a dictionary regarding object recognition (human. Also biologically movement optic-flow patterns utilized. As motion information guides share sketch algorithm in form pathway for adjustment plus it helps to prevent wrong recognition. A synergetic neural network is utilized to generate prototype templates, representing general characteristic form of every class. Having predefined templates, classifying performs based on multitemplate matching. As every human action has one action prototype, there are some overlapping and consistency among these templates. Using fuzzy optical flow division scoring can prevent motivation for misrecognition. We successfully apply proposed model on the human action video obtained from KTH human action database. Proposed approach follows the interaction between dorsal and ventral processing streams in the original model of the biological movement recognition. The attained results indicate promising outcome and improvement in robustness using proposed approach.

  17. Optical design and characterization of an advanced computational imaging system

    Science.gov (United States)

    Shepard, R. Hamilton; Fernandez-Cull, Christy; Raskar, Ramesh; Shi, Boxin; Barsi, Christopher; Zhao, Hang

    2014-09-01

    We describe an advanced computational imaging system with an optical architecture that enables simultaneous and dynamic pupil-plane and image-plane coding accommodating several task-specific applications. We assess the optical requirement trades associated with custom and commercial-off-the-shelf (COTS) optics and converge on the development of two low-cost and robust COTS testbeds. The first is a coded-aperture programmable pixel imager employing a digital micromirror device (DMD) for image plane per-pixel oversampling and spatial super-resolution experiments. The second is a simultaneous pupil-encoded and time-encoded imager employing a DMD for pupil apodization or a deformable mirror for wavefront coding experiments. These two testbeds are built to leverage two MIT Lincoln Laboratory focal plane arrays - an orthogonal transfer CCD with non-uniform pixel sampling and on-chip dithering and a digital readout integrated circuit (DROIC) with advanced on-chip per-pixel processing capabilities. This paper discusses the derivation of optical component requirements, optical design metrics, and performance analyses for the two testbeds built.

  18. 3D Imaging of Nanoparticle Distribution in Biological Tissue by Laser-Induced Breakdown Spectroscopy

    Science.gov (United States)

    Gimenez, Y.; Busser, B.; Trichard, F.; Kulesza, A.; Laurent, J. M.; Zaun, V.; Lux, F.; Benoit, J. M.; Panczer, G.; Dugourd, P.; Tillement, O.; Pelascini, F.; Sancey, L.; Motto-Ros, V.

    2016-07-01

    Nanomaterials represent a rapidly expanding area of research with huge potential for future medical applications. Nanotechnology indeed promises to revolutionize diagnostics, drug delivery, gene therapy, and many other areas of research. For any biological investigation involving nanomaterials, it is crucial to study the behavior of such nano-objects within tissues to evaluate both their efficacy and their toxicity. Here, we provide the first account of 3D label-free nanoparticle imaging at the entire-organ scale. The technology used is known as laser-induced breakdown spectroscopy (LIBS) and possesses several advantages such as speed of operation, ease of use and full compatibility with optical microscopy. We then used two different but complementary approaches to achieve 3D elemental imaging with LIBS: a volume reconstruction of a sliced organ and in-depth analysis. This proof-of-concept study demonstrates the quantitative imaging of both endogenous and exogenous elements within entire organs and paves the way for innumerable applications.

  19. Macro-/micro-environment-sensitive chemosensing and biological imaging.

    Science.gov (United States)

    Yang, Zhigang; Cao, Jianfang; He, Yanxia; Yang, Jung Ho; Kim, Taeyoung; Peng, Xiaojun; Kim, Jong Seung

    2014-07-01

    Environment-related parameters, including viscosity, polarity, temperature, hypoxia, and pH, play pivotal roles in controlling the physical or chemical behaviors of local molecules. In particular, in a biological environment, such factors predominantly determine the biological properties of the local environment or reflect corresponding status alterations. Abnormal changes in these factors would cause cellular malfunction or become a hallmark of the occurrence of severe diseases. Therefore, in recent years, they have increasingly attracted research interest from the fields of chemistry and biological chemistry. With the emergence of fluorescence sensing and imaging technology, several fluorescent chemosensors have been designed to respond to such parameters and to further map their distributions and variations in vitro/in vivo. In this work, we have reviewed a number of various environment-responsive chemosensors related to fluorescent recognition of viscosity, polarity, temperature, hypoxia, and pH that have been reported thus far.

  20. Plasmophore sensitized imaging of ammonia release from biological tissues using optodes

    Energy Technology Data Exchange (ETDEWEB)

    Stroemberg, Niklas, E-mail: niklas.stromberg@sp.se [SP Technical Research Institute of Sweden, Box 857, SE-501 15 Boras (Sweden); Hakonen, Aron, E-mail: hakonen@chem.gu.se [University of Gothenburg, Kemivaegen 10, SE-412 96 Gothenburg (Sweden)

    2011-10-17

    Highlights: {yields} A plasmophore sensitized optode for imaging ammonia (NH{sub 3}) concentrations in muscle tissues was developed. {yields} Ammonia concentrations ranging from 10 nM and upwards can be quantified reversibly with an optical resolution of 127 {mu}m. {yields} The general sensing scheme offers new possibilities for the development of artificial optical noses and tongues. - Abstract: A plasmophore sensitized optode was developed for imaging ammonia (NH{sub 3}) concentrations in muscle tissues. The developed ammonia sensor and an equivalent non plasmophore version of the sensor were tested side by side to compare their limit of detection, dynamic range, reversibility and overall imaging quality. Bio-degradation patterns of ammonia release from lean porcine skeletal muscle were studied over a period of 11 days. We demonstrate that ammonia concentrations ranging from 10 nM can be quantified reversibly with an optical resolution of 127 {mu}m in a sample area of 25 mm x 35 mm. The plasmophore ammonia optode showed improved reversibility, less false pixels and a 2 nM ammonia detection limit compared to 200 nM for the non-plasmophore sensor. Main principles of the sensing mechanism include ammonia transfer over a gas permeable film, ammonia protonation, nonactin facilitated merocyanine-ammonium coextraction and plasmophore enhancement. The vast signal improvement is suggested to rely on solvatochroism, nanoparticle scattering and plasmonic interactions that are utilized constructively in a fluorescence ratio. In addition to fundamental medicinal and biological research applications in tissue physiology, reversible ammonia quantification will be possible for a majority of demanding imaging and non imaging applications such as monitoring of low ammonia background concentrations in air and non-invasive medicinal diagnosis through medical breath or saliva analysis. The nanoparticle doped sensor constitutes a highly competitive technique for ammonia sensing in

  1. Biological object recognition in μ-radiography images

    International Nuclear Information System (INIS)

    This study presents an applicability of real-time microradiography to biological objects, namely to horse chestnut leafminer, Cameraria ohridella (Insecta: Lepidoptera, Gracillariidae) and following image processing focusing on image segmentation and object recognition. The microradiography of insects (such as horse chestnut leafminer) provides a non-invasive imaging that leaves the organisms alive. The imaging requires a high spatial resolution (micrometer scale) radiographic system. Our radiographic system consists of a micro-focus X-ray tube and two types of detectors. The first is a charge integrating detector (Hamamatsu flat panel), the second is a pixel semiconductor detector (Medipix2 detector). The latter allows detection of single quantum photon of ionizing radiation. We obtained numerous horse chestnuts leafminer pupae in several microradiography images easy recognizable in automatic mode using the image processing methods. We implemented an algorithm that is able to count a number of dead and alive pupae in images. The algorithm was based on two methods: 1) noise reduction using mathematical morphology filters, 2) Canny edge detection. The accuracy of the algorithm is higher for the Medipix2 (average recall for detection of alive pupae =0.99, average recall for detection of dead pupae =0.83), than for the flat panel (average recall for detection of alive pupae =0.99, average recall for detection of dead pupae =0.77). Therefore, we conclude that Medipix2 has lower noise and better displays contours (edges) of biological objects. Our method allows automatic selection and calculation of dead and alive chestnut leafminer pupae. It leads to faster monitoring of the population of one of the world's important insect pest

  2. Contrast-based sensorless adaptive optics for retinal imaging.

    Science.gov (United States)

    Zhou, Xiaolin; Bedggood, Phillip; Bui, Bang; Nguyen, Christine T O; He, Zheng; Metha, Andrew

    2015-09-01

    Conventional adaptive optics ophthalmoscopes use wavefront sensing methods to characterize ocular aberrations for real-time correction. However, there are important situations in which the wavefront sensing step is susceptible to difficulties that affect the accuracy of the correction. To circumvent these, wavefront sensorless adaptive optics (or non-wavefront sensing AO; NS-AO) imaging has recently been developed and has been applied to point-scanning based retinal imaging modalities. In this study we show, for the first time, contrast-based NS-AO ophthalmoscopy for full-frame in vivo imaging of human and animal eyes. We suggest a robust image quality metric that could be used for any imaging modality, and test its performance against other metrics using (physical) model eyes. PMID:26417525

  3. Optical and Digital Microscopic Imaging Techniques and Applications in Pathology

    Directory of Open Access Journals (Sweden)

    Xiaodong Chen

    2011-01-01

    Full Text Available The conventional optical microscope has been the primary tool in assisting pathological examinations. The modern digital pathology combines the power of microscopy, electronic detection, and computerized analysis. It enables cellular-, molecular-, and genetic-imaging at high efficiency and accuracy to facilitate clinical screening and diagnosis. This paper first reviews the fundamental concepts of microscopic imaging and introduces the technical features and associated clinical applications of optical microscopes, electron microscopes, scanning tunnel microscopes, and fluorescence microscopes. The interface of microscopy with digital image acquisition methods is discussed. The recent developments and future perspectives of contemporary microscopic imaging techniques such as three-dimensional and in vivo imaging are analyzed for their clinical potentials.

  4. CT guided diffuse optical tomography for breast cancer imaging

    Science.gov (United States)

    Baikejiang, Reheman; Zhang, Wei; Zhu, Dianwen; Li, Changqing

    2016-03-01

    Diffuse optical tomography (DOT) has attracted attentions in the last two decades due to its intrinsic sensitivity in imaging chromophores of tissues such as blood, water, and lipid. However, DOT has not been clinically accepted yet due to its low spatial resolution caused by strong optical scattering in tissues. Structural guidance provided by an anatomical imaging modality enhances the DOT imaging substantially. Here, we propose a computed tomography (CT) guided multispectral DOT imaging system for breast cancer detection. To validate its feasibility, we have built a prototype DOT imaging system which consists of a laser at wavelengths of 650 and an electron multiplying charge coupled device (EMCCD) camera. We have validated the CT guided DOT reconstruction algorithms with numerical simulations and phantom experiments, in which different imaging setup parameters, such as projection number of measurements, the width of measurement patch, have been investigated. Our results indicate that an EMCCD camera with air cooling is good enough for the transmission mode DOT imaging. We have also found that measurements at six projections are sufficient for DOT to reconstruct the optical targets with 4 times absorption contrast when the CT guidance is applied. Finally, we report our effort and progress on the integration of the multispectral DOT imaging system into a breast CT scanner.

  5. The use of contrast agent for imaging biological samples

    Energy Technology Data Exchange (ETDEWEB)

    Dammer, J; Sopko, V; Jakubek, J [Institute of Experimental and Applied Physics, Czech Technical University in Prague, Horska 3a/22, CZ 12800 Prague 2 (Czech Republic); Weyda, F, E-mail: jiri.dammer@utef.cvut.cz [Biological center of the Academy of Sciences of the Czech Republic, Institute of Entomology, Branisovska 31, CZ-37005 Ceske Budejovice (Czech Republic)

    2011-01-15

    The technique of X-ray transmission imaging has been available for over a century and is still among the fastest and easiest approaches to the studies of internal structure of biological samples. Recent advances in semiconductor technology have led to the development of new types of X-ray detectors with direct conversion of interacting X-ray photon to an electric signal. Semiconductor pixel detectors seem to be specially promising; compared to the film technique, they provide single-quantum and real-time digital information about the objects being studied. We describe the recently developed radiographic apparatus, equipped with Medipix2 semiconductor pixel detector. The detector is used as an imager that counts individual photons of ionizing radiation, emitted by an X-ray tube (micro- or nano-focus FeinFocus). Thanks to the wide dynamic range of the Medipix2 detector and its high spatial resolution better than 1{mu}m, the setup is particularly suitable for radiographic imaging of small biological samples, including in-vivo observations with contrast agent (Optiray). Along with the description of the apparatus we provide examples of the use iodine contrast agent as a tracer in various insects as model organisms. The motivation of our work is to develop our imaging techniques as non-destructive and non-invasive. Microradiographic imaging helps detect organisms living in a not visible environment, visualize the internal biological processes and also to resolve the details of their body (morphology). Tiny live insects are an ideal object for our studies.

  6. High-resolution retinal imaging using adaptive optics and Fourier-domain optical coherence tomography

    Science.gov (United States)

    Olivier, Scot S.; Werner, John S.; Zawadzki, Robert J.; Laut, Sophie P.; Jones, Steven M.

    2010-09-07

    This invention permits retinal images to be acquired at high speed and with unprecedented resolution in three dimensions (4.times.4.times.6 .mu.m). The instrument achieves high lateral resolution by using adaptive optics to correct optical aberrations of the human eye in real time. High axial resolution and high speed are made possible by the use of Fourier-domain optical coherence tomography. Using this system, we have demonstrated the ability to image microscopic blood vessels and the cone photoreceptor mosaic.

  7. Optical double-image cryptography based on diffractive imaging with a laterally-translated phase grating.

    Science.gov (United States)

    Chen, Wen; Chen, Xudong; Sheppard, Colin J R

    2011-10-10

    In this paper, we propose a method using structured-illumination-based diffractive imaging with a laterally-translated phase grating for optical double-image cryptography. An optical cryptosystem is designed, and multiple random phase-only masks are placed in the optical path. When a phase grating is laterally translated just before the plaintexts, several diffraction intensity patterns (i.e., ciphertexts) can be correspondingly obtained. During image decryption, an iterative retrieval algorithm is developed to extract plaintexts from the ciphertexts. In addition, security and advantages of the proposed method are analyzed. Feasibility and effectiveness of the proposed method are demonstrated by numerical simulation results.

  8. Optical asymmetric image encryption using gyrator wavelet transform

    Science.gov (United States)

    Mehra, Isha; Nishchal, Naveen K.

    2015-11-01

    In this paper, we propose a new optical information processing tool termed as gyrator wavelet transform to secure a fully phase image, based on amplitude- and phase-truncation approach. The gyrator wavelet transform constitutes four basic parameters; gyrator transform order, type and level of mother wavelet, and position of different frequency bands. These parameters are used as encryption keys in addition to the random phase codes to the optical cryptosystem. This tool has also been applied for simultaneous compression and encryption of an image. The system's performance and its sensitivity to the encryption parameters, such as, gyrator transform order, and robustness has also been analyzed. It is expected that this tool will not only update current optical security systems, but may also shed some light on future developments. The computer simulation results demonstrate the abilities of the gyrator wavelet transform as an effective tool, which can be used in various optical information processing applications, including image encryption, and image compression. Also this tool can be applied for securing the color image, multispectral, and three-dimensional images.

  9. Camera, handlens, and microscope optical system for imaging and coupled optical spectroscopy

    Science.gov (United States)

    Mungas, Greg S. (Inventor); Boynton, John (Inventor); Sepulveda, Cesar A. (Inventor); Nunes de Sepulveda, legal representative, Alicia (Inventor); Gursel, Yekta (Inventor)

    2012-01-01

    An optical system comprising two lens cells, each lens cell comprising multiple lens elements, to provide imaging over a very wide image distance and within a wide range of magnification by changing the distance between the two lens cells. An embodiment also provides scannable laser spectroscopic measurements within the field-of-view of the instrument.

  10. Evaluation of Fingerprint Images Captured by Optical Fingerprint Scanner

    Science.gov (United States)

    Takeuchi, Hideyo; Matsumoto, Noriyuki; Kuwayama, Kiyoaki; Umezaki, Taizo

    In this paper, we propose the way to evaluate fingerprint image-quality and how to discriminate remnants from captured images. First, we investigate evaluating fingerprint image-quality. Fingerprint image-quality can be digitized using the "measure" we proposed. We simulate using the dataset consists of 1425 fingerprint images captured from 57 people in Feb, which contains a lot of faded images. In the simulation using all our database, recognition rate is 95.6% while type II error is 0.01%. Recognition rate is improved to 98.1%, with rejecting 3.7% faded images evaluated by our measure from the database. Recognition rate is improved to 99.6%, rejecting 14.2% faded images. And we investigate the way to apply the measure of image-quality to fingerprint verification device with customer’s satisfaction in real world. Next we propose the way to discriminate between remnants and fingerprint images captured from optical scanner by using frequency analysis. We can perfectly prevent the fingerprint verification device from malfunctioning caused by remnant, when strong flashlight or direct sunlight slant in optical scanner in real world.

  11. Ultrafast transient grating radiation to optical image converter

    Science.gov (United States)

    Stewart, Richard E; Vernon, Stephen P; Steel, Paul T; Lowry, Mark E

    2014-11-04

    A high sensitivity transient grating ultrafast radiation to optical image converter is based on a fixed transmission grating adjacent to a semiconductor substrate. X-rays or optical radiation passing through the fixed transmission grating is thereby modulated and produces a small periodic variation of refractive index or transient grating in the semiconductor through carrier induced refractive index shifts. An optical or infrared probe beam tuned just below the semiconductor band gap is reflected off a high reflectivity mirror on the semiconductor so that it double passes therethrough and interacts with the radiation induced phase grating therein. A small portion of the optical beam is diffracted out of the probe beam by the radiation induced transient grating to become the converted signal that is imaged onto a detector.

  12. Imaging of murine embryonic cardiovascular development using optical coherence tomography (Conference Presentation)

    Science.gov (United States)

    Huang, Yongyang; Degenhardt, Karl R.; Astrof, Sophie; Zhou, Chao

    2016-03-01

    We have demonstrated the capability of spectral domain optical coherence tomography (SDOCT) system to image full development of mouse embryonic cardiovascular system. Monitoring morphological changes of mouse embryonic heart occurred in different embryonic stages helps identify structural or functional cardiac anomalies and understand how these anomalies lead to congenital heart diseases (CHD) present at birth. In this study, mouse embryo hearts ranging from E9.5 to E15.5 were prepared and imaged in vitro. A customized spectral domain OCT system was used for imaging, with a central wavelength of 1310nm, spectral bandwidth of ~100nm and imaging speed of 47kHz A-scans/s. Axial resolution of this system was 8.3µm in air, and transverse resolution was 6.2 µm with 5X objective. Key features of mouse embryonic cardiovascular development such as vasculature remodeling into circulatory system, separation of atria and ventricles and emergence of valves could be clearly seen in three-dimensional OCT images. Optical clearing was applied to overcome the penetration limit of OCT system. With high resolution, fast imaging speed, 3D imaging capability, OCT proves to be a promising biomedical imaging modality for developmental biology studies, rivaling histology and micro-CT.

  13. FIRST IMAGES FROM THE FOCUSING OPTICS X-RAY SOLAR IMAGER

    Energy Technology Data Exchange (ETDEWEB)

    Krucker, Säm; Glesener, Lindsay; Turin, Paul; McBride, Stephen; Glaser, David; Fermin, Jose; Lin, Robert [Space Sciences Laboratory, University of California at Berkeley, Berkeley, CA (United States); Christe, Steven [NASA Goddard Space Flight Center, Greenbelt, MD (United States); Ishikawa, Shin-nosuke [National Astronomical Observatory, Mitaka (Japan); Ramsey, Brian; Gubarev, Mikhail; Kilaru, Kiranmayee [NASA Marshall Space Flight Center, Huntsville, AL (United States); Takahashi, Tadayuki; Watanabe, Shin; Saito, Shinya [Institute of Space and Astronautical Science (ISAS)/JAXA, Sagamihara (Japan); Tajima, Hiroyasu [Solar-Terrestial Environment Laboratory, Nagoya University, Nagoya (Japan); Tanaka, Takaaki [Department of Physics, Kyoto University, Kyoto (Japan); White, Stephen [Air Force Research Laboratory, Albuquerque, NM (United States)

    2014-10-01

    The Focusing Optics X-ray Solar Imager (FOXSI) sounding rocket payload flew for the first time on 2012 November 2, producing the first focused images of the Sun above 5 keV. To enable hard X-ray (HXR) imaging spectroscopy via direct focusing, FOXSI makes use of grazing-incidence replicated optics combined with fine-pitch solid-state detectors. On its first flight, FOXSI observed several targets that included active regions, the quiet Sun, and a GOES-class B2.7 microflare. This Letter provides an introduction to the FOXSI instrument and presents its first solar image. These data demonstrate the superiority in sensitivity and dynamic range that is achievable with a direct HXR imager with respect to previous, indirect imaging methods, and illustrate the technological readiness for a spaceborne mission to observe HXRs from solar flares via direct focusing optics.

  14. Synthesis of Disparate Optical Imaging Data for Space Domain Awareness

    CERN Document Server

    Schneider, Michael D

    2016-01-01

    We present a Bayesian algorithm to combine optical imaging of unresolved objects from distinct epochs and observation platforms for orbit determination and tracking. By propagating the non-Gaussian uncertainties we are able to optimally combine imaging of arbitrary signal-to-noise ratios, allowing the integration of data from low-cost sensors. Our Bayesian approach to image characterization also allows large compression of imaging data without loss of statistical information. With a computationally efficient algorithm to combine multiple observation epochs and multiple telescopes, we show statistically optimal orbit inferences.

  15. Double integrating spheres: A method for assessment of optical properties of biological tissues

    OpenAIRE

    Poppendieck, Wigand

    2004-01-01

    The determination of the optical properties of biological tissue is an important issue in laser medicine. The optical properties define the tissue´s absorption and scattering behaviour, and can be expressed by quantities such as the albedo, the optical thickness and the anisotropy coefficient. During this project, a measurement system for the determination of the optical properties was built up. The system consists of a double integrating sphere set-up to perform the necessary reflection and ...

  16. THz near-field imaging of biological tissues employing synchrotronradiation

    Energy Technology Data Exchange (ETDEWEB)

    Schade, Ulrich; Holldack, Karsten; Martin, Michael C.; Fried,Daniel

    2004-12-23

    Terahertz scanning near-field infrared microscopy (SNIM) below 1 THz is demonstrated. The near-field technique benefits from the broadband and highly brilliant coherent synchrotron radiation (CSR) from an electron storage ring and from a detection method based on locking onto the intrinsic time structure of the synchrotron radiation. The scanning microscope utilizes conical wave guides as near-field probes with apertures smaller than the wavelength. Different cone approaches have been investigated to obtain maximum transmittance. Together with a Martin-Puplett spectrometer the set-up enables spectroscopic mapping of the transmittance of samples well below the diffraction limit. Spatial resolution down to about lambda/40 at 2 wavenumbers (0.06 THz) is derived from the transmittance spectra of the near-field probes. The potential of the technique is exemplified by imaging biological samples. Strongly absorbing living leaves have been imaged in transmittance with a spatial resolution of 130 mu-m at about 12 wave numbers (0.36 THz). The THz near-field images reveal distinct structural differences of leaves from different plants investigated. The technique presented also allows spectral imaging of bulky organic tissues. Human teeth samples of various thicknesses have been imaged between 2 and 20 wavenumbers (between 0.06and 0.6 THz). Regions of enamel and dentin within tooth samples are spatially and spectrally resolved, and buried caries lesions are imaged through both the outer enamel and into the underlying dentin.

  17. Optical image acquisition system for colony analysis

    Science.gov (United States)

    Wang, Weixing; Jin, Wenbiao

    2006-02-01

    For counting of both colonies and plaques, there is a large number of applications including food, dairy, beverages, hygiene, environmental monitoring, water, toxicology, sterility testing, AMES testing, pharmaceuticals, paints, sterile fluids and fungal contamination. Recently, many researchers and developers have made efforts for this kind of systems. By investigation, some existing systems have some problems since they belong to a new technology product. One of the main problems is image acquisition. In order to acquire colony images with good quality, an illumination box was constructed as: the box includes front lightning and back lightning, which can be selected by users based on properties of colony dishes. With the illumination box, lightning can be uniform; colony dish can be put in the same place every time, which make image processing easy. A digital camera in the top of the box connected to a PC computer with a USB cable, all the camera functions are controlled by the computer.

  18. Computational optical biomedical spectroscopy and imaging

    CERN Document Server

    Musa, Sarhan M

    2015-01-01

    Applications of Vibrational Spectroscopic Imaging in Personal Care Studies; Guojin Zhang, Roger L. McMullen, Richard Mendelsohn, and Osama M. MusaFluorescence Bioimaging with Applications to Chemistry; Ufana Riaz and S.M. AshrafNew Trends in Immunohistochemical, Genome, and Metabolomics Imaging; G. Livanos, Aditi Deshpande, C. Narayan, Ying Na, T. Quang, T. Farrahi, R. Koglin, Suman Shrestha, M. Zervakis, and George C. GiakosDeveloping a Comprehensive Taxonomy for Human Cell Types; Richard Conroy and Vinay PaiFunctional Near-Infrared S

  19. Neutron imaging for inertial confinement fusion and molecular optic imaging

    International Nuclear Information System (INIS)

    Scientific domains that require imaging of micrometric/nano-metric objects are dramatically increasing (Plasma Physics, Astrophysics, Biotechnology, Earth Sciences...). Difficulties encountered in imaging smaller and smaller objects make this research area more and more challenging and in constant evolution. The two scientific domains, through which this study has been led, are the neutron imaging in the context of the inertial confinement fusion and the fluorescence molecular imaging. Work presented in this thesis has two main objectives. The first one is to describe the instrumentation characteristics that require such imagery and, relatively to the scientific domains considered, identify parameters likely to optimize the imaging system accuracy. The second one is to present the developed data analysis and reconstruction methods able to provide spatial resolution adapted to the size of the observed object. Similarities of numerical algorithms used in these two scientific domains, which goals are quiet different, show how micrometric/nano-metric object imaging is a research area at the border of a large number of scientific disciplines. (author)

  20. A True Multi-modality Approach for High Resolution Optical Imaging: Photo-Magnetic Imaging

    OpenAIRE

    Luk, Alex T.; Ha, Seunghoon; Nouizi, Farouk; Thayer, David; Lin, Yuting; Gulsen, Gultekin

    2014-01-01

    Multi-modality imaging leverages the competitive advantage of different imaging systems to improve the overall resolution and quantitative accuracy. Our new technique, Photo-Magnetic Imaging (PMI) is one of these true multi-modality imaging approaches, which can provide quantitative optical absorption map at MRI spatial resolution. PMI uses laser light to illuminate tissue and elevate its temperature while utilizing MR thermometry to measure the laser-induced temperature variation with high s...

  1. Virtual Averaging Making Nonframe-Averaged Optical Coherence Tomography Images Comparable to Frame-Averaged Images

    OpenAIRE

    Chen, Chieh-Li; Ishikawa, Hiroshi; Wollstein, Gadi; Bilonick, Richard A.; Kagemann, Larry; Schuman, Joel S.

    2016-01-01

    Purpose Developing a novel image enhancement method so that nonframe-averaged optical coherence tomography (OCT) images become comparable to active eye-tracking frame-averaged OCT images. Methods Twenty-one eyes of 21 healthy volunteers were scanned with noneye-tracking nonframe-averaged OCT device and active eye-tracking frame-averaged OCT device. Virtual averaging was applied to nonframe-averaged images with voxel resampling and adding amplitude deviation with 15-time repetitions. Signal-to...

  2. Alignment of microcircuit chips using optically smeared images.

    Science.gov (United States)

    Lewis, R W

    1979-02-01

    An optical method for determining the position of microcircuit chips for wirebonding or electrical testing stations was evaluated. Optically smearing the chip image in one direction with a cylindrical lens produces a convenient means for determining both chip angular orientation and position. Digitized images from a linear photodiode array camera were analyzed. The results show that a class of microcircuit chips with medium scale integration can be aligned in angle and position to a higher accuracy than required for wirebonding and electrical testing stations. PMID:20208714

  3. Image segmentation by nonlinear filtering of optical Hough transform.

    Science.gov (United States)

    Fernández, Ariel; Flores, Jorge L; Alonso, Julia R; Ferrari, José A

    2016-05-01

    The identification and extraction (i.e., segmentation) of geometrical features is crucial in many tasks requiring image analysis. We present a method for the optical segmentation of features of interest from an edge enhanced image. The proposed method is based on the nonlinear filtering (implemented by the use of a spatial light modulator) of the generalized optical Hough transform and is capable of discriminating features by shape and by size. The robustness of the method against noise in the input, low contrast, or overlapping of geometrical features is assessed, and experimental validation of the working principle is presented. PMID:27140381

  4. Deep optical images of malin 1 reveal new features

    OpenAIRE

    Galaz, Gaspar; Milovic, Carlos; Suc, Vincent; Busta, Luis; Lizana, Guadalupe; Infante, Leopoldo; Royo Royo, Santiago

    2015-01-01

    We present Megacam deep optical images (g and r) of Malin 1 obtained with the 6.5m Magellan/Clay telescope, detecting structures down to ~ 28 B mag arcsec-2. In order to enhance galaxy features buried in the noise, we use a noise reduction filter based on the total generalized variation regularizator. This method allows us to detect and resolve very faint morphological features, including spiral arms, with a high visual contrast. For the first time, we can appreciate an optical image of Malin...

  5. Dynamic PET and Optical Imaging and Compartment Modeling using a Dual-labeled Cyclic RGD Peptide Probe

    Directory of Open Access Journals (Sweden)

    Lei Zhu, Ning Guo, Quanzheng Li, Ying Ma, Orit Jacboson, Seulki Lee, Hak Soo Choi, James R. Mansfield, Gang Niu, Xiaoyuan Chen

    2012-01-01

    Full Text Available Purpose: The aim of this study is to determine if dynamic optical imaging could provide comparable kinetic parameters to that of dynamic PET imaging by a near-infrared dye/64Cu dual-labeled cyclic RGD peptide.Methods: The integrin αvβ3 binding RGD peptide was conjugated with a macrocyclic chelator 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid (DOTA for copper labeling and PET imaging and a near-infrared dye ZW-1 for optical imaging. The in vitro biological activity of RGD-C(DOTA-ZW-1 was characterized by cell staining and receptor binding assay. Sixty-min dynamic PET and optical imaging were acquired on a MDA-MB-435 tumor model. Singular value decomposition (SVD method was applied to compute the dynamic optical signal from the two-dimensional optical projection images. Compartment models were used to quantitatively analyze and compare the dynamic optical and PET data.Results: The dual-labeled probe 64Cu-RGD-C(DOTA-ZW-1 showed integrin specific binding in vitro and in vivo. The binding potential (Bp derived from dynamic optical imaging (1.762 ± 0.020 is comparable to that from dynamic PET (1.752 ± 0.026.Conclusion: The signal un-mixing process using SVD improved the accuracy of kinetic modeling of 2D dynamic optical data. Our results demonstrate that 2D dynamic optical imaging with SVD analysis could achieve comparable quantitative results as dynamic PET imaging in preclinical xenograft models.

  6. Advanced optical imaging in living embryos

    OpenAIRE

    Canaria, Christie A.; Lansford, Rusty

    2010-01-01

    Developmental biology investigations have evolved from static studies of embryo anatomy and into dynamic studies of the genetic and cellular mechanisms responsible for shaping the embryo anatomy. With the advancement of fluorescent protein fusions, the ability to visualize and comprehend how thousands to millions of cells interact with one another to form tissues and organs in three dimensions (xyz) over time (t) is just beginning to be realized and exploited. In this review, we explore recen...

  7. Change detection in very high resolution multisensor optical images

    Science.gov (United States)

    Solano Correa, Yady T.; Bovolo, Francesca; Bruzzone, Lorenzo

    2014-10-01

    This work aims at developing an approach to the detection of changes in multisensor multitemporal VHR optical images. The main steps of the proposed method are: i) multisensor data homogenization; and ii) change detection in multisensor multitemporal VHR optical images. The proposed approach takes advantage of: the conversion to physical quantities suggested by Pacifici et. al.1 , the framework for the design of systems for change detection in VHR images presented by Bruzzone and Bovolo2 and the framework for unsupervised change detection presented by Bovolo and Bruzzone3. Multisensor data homogenization is achieved during pre-processing by taking into account differences in both radiometric and geometric dimensions. Whereas change detection was approached by extracting proper features from multisensor images such that they result to be comparable (at a given level of abstraction) even if extracted from images acquired by different sensors. In order to illustrate the results, a data set made up of a QuickBird and a WorldView-2 images - acquired in 2006 and 2010 respectively - over an area located in the Trentino region of Italy were used. However, the proposed approach is thought to be exportable to multitemporal images coming from passive sensors other than the two mentioned above. The experimental results obtained on the QuickBird and WorlView-2 image pair are accurate. Thus opening to further experiments on multitemporal images acquired by other sensors.

  8. Optical fiber based imaging of bioengineered tissue construct

    Science.gov (United States)

    Sapoznik, Etai; Niu, Guoguang; Lu, Peng; Zhou, Yu; Xu, Yong; Soker, Shay

    2016-04-01

    Imaging cells and tissues through opaque and turbid media is challenging and presents a major barrier for monitoring maturation and remodeling of bioengineered tissues. The fiber optics based imaging system described here offers a new approach for fluorescent cell imaging. A micro imaging channel is embedded in a Polycaprolactone (PCL) electrospun scaffold designed for cell seeding, which allows us to use an optical fiber to locally deliver excitation laser close to the fluorescent cells. The emission is detected by an Electron Multiplying Charge Coupled Device (EMCCD) detector and image reconstruction of multiple excitation points is achieved with a working distance of several centimeters. The objective of this study is to assess the effects of system parameters on image reconstruction outcomes. Initial studies using fluorescent beads indicated that scaffold thickness had a small effect on image quality, whereas scaffold composition (collagen content), fluorophore spectra, and the reconstruction window size had a large effect. The results also suggest that a far-red fluorescent emission is preferential when using collagenous scaffolds with a thickness of up to 500 μm. Using these optimized parameters, we were able to image fluorescently labeled cells on a scaffold with a resolution of 15-20 μm, and have also measured muscle progenitor cell differentiation and scaffold surface coverage with endothelial cells. In the future, this imaging platform can be applied to other bioengineered tissues for non-invasive monitoring both in vitro and in vivo.

  9. The diffractive achromat full spectrum computational imaging with diffractive optics

    KAUST Repository

    Peng, Yifan

    2016-07-11

    Diffractive optical elements (DOEs) have recently drawn great attention in computational imaging because they can drastically reduce the size and weight of imaging devices compared to their refractive counterparts. However, the inherent strong dispersion is a tremendous obstacle that limits the use of DOEs in full spectrum imaging, causing unacceptable loss of color fidelity in the images. In particular, metamerism introduces a data dependency in the image blur, which has been neglected in computational imaging methods so far. We introduce both a diffractive achromat based on computational optimization, as well as a corresponding algorithm for correction of residual aberrations. Using this approach, we demonstrate high fidelity color diffractive-only imaging over the full visible spectrum. In the optical design, the height profile of a diffractive lens is optimized to balance the focusing contributions of different wavelengths for a specific focal length. The spectral point spread functions (PSFs) become nearly identical to each other, creating approximately spectrally invariant blur kernels. This property guarantees good color preservation in the captured image and facilitates the correction of residual aberrations in our fast two-step deconvolution without additional color priors. We demonstrate our design of diffractive achromat on a 0.5mm ultrathin substrate by photolithography techniques. Experimental results show that our achromatic diffractive lens produces high color fidelity and better image quality in the full visible spectrum. © 2016 ACM.

  10. Breast imaging technology: Probing physiology and molecular function using optical imaging - applications to breast cancer

    International Nuclear Information System (INIS)

    The present review addresses the capacity of optical imaging to resolve functional and molecular characteristics of breast cancer. We focus on recent developments in optical imaging that allow three-dimensional reconstruction of optical signatures in the human breast using diffuse optical tomography (DOT). These technologic advances allow the noninvasive, in vivo imaging and quantification of oxygenated and deoxygenated hemoglobin and of contrast agents that target the physiologic and molecular functions of tumors. Hence, malignancy differentiation can be based on a novel set of functional features that are complementary to current radiologic imaging methods. These features could enhance diagnostic accuracy, lower the current state-of-the-art detection limits, and play a vital role in therapeutic strategy and monitoring

  11. The Subaru Deep Field: The Optical Imaging Data

    CERN Document Server

    Kashikawa, N; Yasuda, N; Ajiki, M; Akiyama, M; Ando, H; Aoki, K; Doi, M; Fujita, S S; Furusawa, H; Hayashino, T; Iwamuro, F; Iye, M; Karoji, H; Kobayashi, N; Kodaira, K; Kodama, T; Komiyama, Yu; Matsuda, Y; Miyazaki, S; Mizumoto, Y; Morokuma, T; Motohara, K; Murayama, T; Nagao, T; Nariai, K; Ohta, K; Okamura, S; Ouchi, M; Sasaki, T; Sato, Y; Sekiguchi, K; Shioya, Y; Tamura, H; Taniguchi, Y; Umemura, M; Yamada, T; Yoshida, M

    2004-01-01

    The Subaru Deep Field (SDF) project is a program of Subaru Observatory to carry out a deep galaxy survey over a blank field as large as 34'x27'. The program consists of very deep multi-band optical imaging, near infrared imaging for smaller portions of the field and follow-up optical spectroscopy. Major scientific goals of the project are to construct large samples of Lyman-break galaxies at z~4-5 and Lyman alpha emitters at z~5.7 and 6.6, and to make detailed studies these very high-redshift galaxy populations. In this paper, we describe the optical imaging observations and data reduction, presenting mosaicked images and object catalogs in seven bandpasses.The optical imaging was made through five broad-band filters, B, V, R, i', z', and two narrow-band filters, NB816 (lambda_c=8150A) and NB921 (lambda_c=9196A) with almost 10 hours long integrations for each band. The limiting magnitudes measured at 3-sigma on a 2" aperture are B=28.45, V=27.74, R=27.80, i'=27.43, z'=26.62, NB816=26.63, and NB921=26.54 in th...

  12. Automated Localization of Optic Disc in Retinal Images

    Directory of Open Access Journals (Sweden)

    Deepali A.Godse

    2013-03-01

    Full Text Available An efficient detection of optic disc (OD in colour retinal images is a significant task in an automated retinal image analysis system. Most of the algorithms developed for OD detection are especially applicable to normal and healthy retinal images. It is a challenging task to detect OD in all types of retinal images, that is, normal, healthy images as well as abnormal, that is, images affected due to disease. This paper presents an automated system to locate an OD and its centre in all types of retinal images. The ensemble of steps based on different criteria produces more accurate results. The proposed algorithm gives excellent results and avoids false OD detection. The technique is developed and tested on standard databases provided for researchers on internet, Diaretdb0 (130 images, Diaretdb1 (89 images, Drive (40 images and local database (194 images. The local database images are collected from ophthalmic clinics. It is able to locate OD and its centre in 98.45% of all tested cases. The results achieved by different algorithms can be compared when algorithms are applied on same standard databases. This comparison is also discussed in this paper which shows that the proposed algorithm is more efficient.

  13. Biological effects of exposure to magnetic resonance imaging: an overview

    Directory of Open Access Journals (Sweden)

    Formica Domenico

    2004-04-01

    Full Text Available Abstract The literature on biological effects of magnetic and electromagnetic fields commonly utilized in magnetic resonance imaging systems is surveyed here. After an introduction on the basic principles of magnetic resonance imaging and the electric and magnetic properties of biological tissues, the basic phenomena to understand the bio-effects are described in classical terms. Values of field strengths and frequencies commonly utilized in these diagnostic systems are reported in order to allow the integration of the specific literature on the bio-effects produced by magnetic resonance systems with the vast literature concerning the bio-effects produced by electromagnetic fields. This work gives an overview of the findings about the safety concerns of exposure to static magnetic fields, radio-frequency fields, and time varying magnetic field gradients, focusing primarily on the physics of the interactions between these electromagnetic fields and biological matter. The scientific literature is summarized, integrated, and critically analyzed with the help of authoritative reviews by recognized experts, international safety guidelines are also cited.

  14. An Imaging Roadmap for Biology Education: From Nanoparticles to Whole Organisms

    OpenAIRE

    Kelley, Daniel J.; Davidson, Richard J.; Nelson, David L.

    2008-01-01

    Imaging techniques provide ways of knowing structure and function in biology at different scales. The multidisciplinary nature and rapid advancement of imaging sciences requires imaging education to begin early in the biology curriculum. Guided by the National Institutes of Health (NIH) Roadmap initiatives, we incorporated a nanoimaging, molecular imaging, and medical imaging teaching unit into three 1-h class periods of an introductory course on ways of knowing biology. Activities were deriv...

  15. Closed-loop optical stabilization and digital image registration in adaptive optics scanning light ophthalmoscopy.

    Science.gov (United States)

    Yang, Qiang; Zhang, Jie; Nozato, Koji; Saito, Kenichi; Williams, David R; Roorda, Austin; Rossi, Ethan A

    2014-09-01

    Eye motion is a major impediment to the efficient acquisition of high resolution retinal images with the adaptive optics (AO) scanning light ophthalmoscope (AOSLO). Here we demonstrate a solution to this problem by implementing both optical stabilization and digital image registration in an AOSLO. We replaced the slow scanning mirror with a two-axis tip/tilt mirror for the dual functions of slow scanning and optical stabilization. Closed-loop optical stabilization reduced the amplitude of eye-movement related-image motion by a factor of 10-15. The residual RMS error after optical stabilization alone was on the order of the size of foveal cones: ~1.66-2.56 μm or ~0.34-0.53 arcmin with typical fixational eye motion for normal observers. The full implementation, with real-time digital image registration, corrected the residual eye motion after optical stabilization with an accuracy of ~0.20-0.25 μm or ~0.04-0.05 arcmin RMS, which to our knowledge is more accurate than any method previously reported.

  16. Optical coherence tomography-based micro-particle image velocimetry.

    Science.gov (United States)

    Mujat, Mircea; Ferguson, R Daniel; Iftimia, Nicusor; Hammer, Daniel X; Nedyalkov, Ivaylo; Wosnik, Martin; Legner, Hartmut

    2013-11-15

    We present a new application of optical coherence tomography (OCT), widely used in biomedical imaging, to flow analysis in near-wall hydrodynamics for marine research. This unique capability, called OCT micro-particle image velocimetry, provides a high-resolution view of microscopic flow phenomena and measurement of flow statistics within the first millimeter of a boundary layer. The technique is demonstrated in a small flow cuvette and in a water tunnel.

  17. A Survey on Object Detection in Optical Remote Sensing Images

    OpenAIRE

    Cheng, Gong; Han, Junwei

    2016-01-01

    Object detection in optical remote sensing images, being a fundamental but challenging problem in the field of aerial and satellite image analysis, plays an important role for a wide range of applications and is receiving significant attention in recent years. While enormous methods exist, a deep review of the literature concerning generic object detection is still lacking. This paper aims to provide a review of the recent progress in this field. Different from several previously published su...

  18. FY05 LDRD Final Report, A Revolution in Biological Imaging

    Energy Technology Data Exchange (ETDEWEB)

    Chapman, H N; Bajt, S; Balhorn, R; Barty, A; Barsky, D; Bogan, M; Chung, S; Frank, M; Hau-Riege, S; Ishii, H; London, R; Marchesini, S; Noy, A; Segelke, B; Szoke, A; Szoke, H; Trebes, J; Wootton, A; Hajdu, J; Bergh, M; Caleman, C; Huldt, G; Lejon, S; der Spoel, D v; Howells, M; He, H; Spence, J; Nugent, K; Ingerman, E

    2006-01-20

    X-ray free-electron lasers (XFELs) are currently under development and will provide a peak brightness more than 10 orders of magnitude higher than modern synchrotrons. The goal of this project was to perform the fundamental research to evaluate the possibility of harnessing these unique x-ray sources to image single biological particles and molecules at atomic resolution. Using a combination of computational modeling and experimental verification where possible, they showed that it should indeed be possible to record coherent scattering patterns from single molecules with pulses that are shorter than the timescales for the degradation of the structure due to the interaction with those pulses. They used these models to determine the effectiveness of strategies to allow imaging using longer XFEL pulses and to design validation experiments to be carried out at interim ultrafast sources. They also developed and demonstrated methods to recover three-dimensional (3D) images from coherent diffraction patterns, similar to those expected from XFELs. The images of micron-sized test objects are the highest-resolution 3D images of any noncrystalline material ever formed with x-rays. The project resulted in 14 publications in peer-reviewed journals and four records of invention.

  19. Bioluminescence : the potential of a non-invasive bio-optical imaging technique and improvement of animal research

    NARCIS (Netherlands)

    Hesselink, J. W.; van Dam, G. M.

    2007-01-01

    Bioluminescence is an optical imaging technique that exploits the emission of photons at specific wavelengths based on energy-dependent reactions catalysed by luciferases. The technique makes it possible to monitor measure, and track biological processes in living animals. A short review is presente

  20. Speckle reduction in optical coherence tomography imaging by affine-motion image registration

    Science.gov (United States)

    Alonso-Caneiro, David; Read, Scott A.; Collins, Michael J.

    2011-11-01

    Signal-degrading speckle is one factor that can reduce the quality of optical coherence tomography images. We demonstrate the use of a hierarchical model-based motion estimation processing scheme based on an affine-motion model to reduce speckle in optical coherence tomography imaging, by image registration and the averaging of multiple B-scans. The proposed technique is evaluated against other methods available in the literature. The results from a set of retinal images show the benefit of the proposed technique, which provides an improvement in signal-to-noise ratio of the square root of the number of averaged images, leading to clearer visual information in the averaged image. The benefits of the proposed technique are also explored in the case of ocular anterior segment imaging.

  1. Spaceborne astronomy with electro-optical image sensors

    Science.gov (United States)

    Bradley, W. C.

    1977-01-01

    The Space Telescope, planned for orbiting in the early 1980s, is described, with emphasis on its electro-optical image sensing capability. Relative advantages of image tubes and solid state arrays as image detectors are summarized; image tube technology is well characterized, but preference may be given to a more versatile tandem solid state array consisting of one module with high silicon response covering most of the spectrum, and a second intensified array with ultraviolet sensitivity and low noise readout. The classical 'photoelectron noise limit' calculation is reviewed, and a detailed calculation of sensitivity limits adaptable to analysis of image tube or solid state array detectors is also given. In particular, characteristics of a filter to optimize the signal to noise ratio is determined. Typical sensitivity calculations for an image tube detector show that with an exposure of one orbital night (approximately 2000 seconds), 10% photometry may be done to a low limit of visual magnitude.

  2. Imaging Coronary Atherosclerosis and Vulnerable Plaques with Optical Coherence Tomography

    Science.gov (United States)

    Tearney, Guillermo J.; Jang, Ik-Kyung; Kashiwagi, Manubu; Bouma, Brett E.

    Intracoronary optical coherence tomography (OCT) is an invasive microscopic imaging technology that has been developed for the identification of vulnerable plaque. OCT acquires cross-sectional images of tissue reflectance and, since it may be implemented through an optical fiber probe, it is readily adaptable to coronary catheters for insertion into coronary arteries and circumferential imaging of arterial pathology. The first investigation of vascular optical coherence tomography ex vivo demonstrated the potential of this technique to identify arterial microstructure. Subsequent development of OCT technology enabled image acquisition at rates sufficient for intracoronary imaging in human patients. In this chapter, we review studies conducted with this technology at the Massachusetts General Hospital (MGH). Results from these studies show that a wide variety of microscopic features, including those associated with TCFAs, can be identified by OCT imaging both ex vivo and in living human patients. These findings suggest that this technology will play an important role in improving our understanding of coronary artery disease, guiding local therapy, and decreasing themortality of AMI.

  3. Functional Doppler optical coherence tomography for cortical blood flow imaging

    Science.gov (United States)

    Yu, Lingfeng; Liu, Gangjun; Nguyen, Elaine; Choi, Bernard; Chen, Zhongping

    2010-02-01

    Optical methods have been widely used in basic neuroscience research to study the cerebral blood flow dynamics in order to overcome the low spatial resolution associated with magnetic resonance imaging and positron emission tomography. Although laser Doppler imaging and laser speckle imaging can map out en face cortical hemodynamics and columns, depth resolution is not available. Two-photon microscopy has been used for mapping cortical activity. However, flow measurement requires fluorescent dye injection, which can be problematic. The noninvasive and high resolution tomographic capabilities of optical coherence tomography make it a promising technique for mapping depth resolved cortical blood flow. Here, we present a functional Doppler optical coherence tomography (OCT) imaging modality for quantitative evaluation of cortical blood flow in a mouse model. Fast, repeated, Doppler OCT scans across a vessel of interest were performed to record flow dynamic information with a high temporal resolution of the cardiac cycles. Spectral Doppler analysis of continuous Doppler images demonstrates how the velocity components and longitudinally projected flow-volume-rate change over time, thereby providing complementary temporal flow information to the spatially distributed flow information of Doppler OCT. The proposed functional Doppler OCT imaging modality can be used to diagnose vessel stenosis/blockage or monitor blood flow changes due to pharmacological agents/neuronal activities. Non-invasive in-vivo mice experiments were performed to verify the capabilities of function Doppler OCT.

  4. Three-dimensional imaging of biological cells with picosecond ultrasonics

    Science.gov (United States)

    Danworaphong, Sorasak; Tomoda, Motonobu; Matsumoto, Yuki; Matsuda, Osamu; Ohashi, Toshiro; Watanabe, Hiromu; Nagayama, Masafumi; Gohara, Kazutoshi; Otsuka, Paul H.; Wright, Oliver B.

    2015-04-01

    We use picosecond ultrasonics to image animal cells in vitro—a bovine aortic endothelial cell and a mouse adipose cell—fixed to Ti-coated sapphire. Tightly focused ultrashort laser pulses generate and detect GHz acoustic pulses, allowing three-dimensional imaging (x, y, and t) of the ultrasonic propagation in the cells with ˜1 μm lateral and ˜150 nm depth resolutions. Time-frequency representations of the continuous-wavelet-transform amplitude of the optical reflectivity variations inside and outside the cells show GHz Brillouin oscillations, allowing the average sound velocities of the cells and their ultrasonic attenuation to be obtained as well as the average bulk moduli.

  5. Innovations of wide-field optical-sectioning fluorescence microscopy: toward high-speed volumetric bio-imaging with simplicity

    Science.gov (United States)

    Yu, Jiun-Yann

    Optical microscopy has become an indispensable tool for biological researches since its invention, mostly owing to its sub-cellular spatial resolutions, non-invasiveness, instrumental simplicity, and the intuitive observations it provides. Nonetheless, obtaining reliable, quantitative spatial information from conventional wide-field optical microscopy is not always intuitive as it appears to be. This is because in the acquired images of optical microscopy the information about out-of-focus regions is spatially blurred and mixed with in-focus information. In other words, conventional wide-field optical microscopy transforms the three-dimensional spatial information, or volumetric information about the objects into a two-dimensional form in each acquired image, and therefore distorts the spatial information about the object. Several fluorescence holography-based methods have demonstrated the ability to obtain three-dimensional information about the objects, but these methods generally rely on decomposing stereoscopic visualizations to extract volumetric information and are unable to resolve complex 3-dimensional structures such as a multi-layer sphere. The concept of optical-sectioning techniques, on the other hand, is to detect only two-dimensional information about an object at each acquisition. Specifically, each image obtained by optical-sectioning techniques contains mainly the information about an optically thin layer inside the object, as if only a thin histological section is being observed at a time. Using such a methodology, obtaining undistorted volumetric information about the object simply requires taking images of the object at sequential depths. Among existing methods of obtaining volumetric information, the practicability of optical sectioning has made it the most commonly used and most powerful one in biological science. However, when applied to imaging living biological systems, conventional single-point-scanning optical-sectioning techniques often

  6. Glaucoma severity affects diffusion tensor imaging (DTI) parameters of the optic nerve and optic radiation

    International Nuclear Information System (INIS)

    Objectives: To evaluate whether MR diffusion tensor imaging (DTI) of the optic nerve and optic radiation in glaucoma patients provides parameters to discriminate between mild and severe glaucoma and to determine whether DTI derived indices correlate with retinal nerve fibre layer (RNFL) thickness. Methods: 3-Tesla DTI was performed on 90 subjects (30 normal, 30 mild glaucoma and 30 severe glaucoma subjects) and the FA and MD of the optic nerve and optic radiation were measured. The categorisation into mild and severe glaucoma was done using the Hodapp–Parrish–Anderson (HPA) classification. RNFL thickness was also assessed on all subjects using OCT. Receiver operating characteristic (ROC) analysis and Spearman's correlation coefficient was carried out. Results: FA and MD values in the optic nerve and optic radiation decreased and increased respectively as the disease progressed. FA at the optic nerve had the highest sensitivity (87%) and specificity (80%). FA values displayed the strongest correlation with RNFL thickness in the optic nerve (r = 0.684, p ≤ 0.001) while MD at the optic radiation showed the weakest correlation with RNFL thickness (r = −0.360, p ≤ 0.001). Conclusions: The high sensitivity and specificity of DTI-derived FA values in the optic nerve and the strong correlation between DTI-FA and RNFL thickness suggest that these parameters could serve as indicators of disease severity

  7. Glaucoma severity affects diffusion tensor imaging (DTI) parameters of the optic nerve and optic radiation

    Energy Technology Data Exchange (ETDEWEB)

    Sidek, S. [Department of Biomedical Imaging, University Malaya, Research Imaging Centre, Faculty of Medicine, University Malaya (Malaysia); Medical Imaging Unit, Faculty of Medicine, Universiti Teknologi MARA, Selangor (Malaysia); Ramli, N. [Department of Biomedical Imaging, University Malaya, Research Imaging Centre, Faculty of Medicine, University Malaya (Malaysia); Rahmat, K., E-mail: katt_xr2000@yahoo.com [Department of Biomedical Imaging, University Malaya, Research Imaging Centre, Faculty of Medicine, University Malaya (Malaysia); Ramli, N.M.; Abdulrahman, F. [Department of Ophthalmology, Faculty of Medicine, University Malaya, Kuala Lumpur (Malaysia); Tan, L.K. [Department of Biomedical Imaging, University Malaya, Research Imaging Centre, Faculty of Medicine, University Malaya (Malaysia)

    2014-08-15

    Objectives: To evaluate whether MR diffusion tensor imaging (DTI) of the optic nerve and optic radiation in glaucoma patients provides parameters to discriminate between mild and severe glaucoma and to determine whether DTI derived indices correlate with retinal nerve fibre layer (RNFL) thickness. Methods: 3-Tesla DTI was performed on 90 subjects (30 normal, 30 mild glaucoma and 30 severe glaucoma subjects) and the FA and MD of the optic nerve and optic radiation were measured. The categorisation into mild and severe glaucoma was done using the Hodapp–Parrish–Anderson (HPA) classification. RNFL thickness was also assessed on all subjects using OCT. Receiver operating characteristic (ROC) analysis and Spearman's correlation coefficient was carried out. Results: FA and MD values in the optic nerve and optic radiation decreased and increased respectively as the disease progressed. FA at the optic nerve had the highest sensitivity (87%) and specificity (80%). FA values displayed the strongest correlation with RNFL thickness in the optic nerve (r = 0.684, p ≤ 0.001) while MD at the optic radiation showed the weakest correlation with RNFL thickness (r = −0.360, p ≤ 0.001). Conclusions: The high sensitivity and specificity of DTI-derived FA values in the optic nerve and the strong correlation between DTI-FA and RNFL thickness suggest that these parameters could serve as indicators of disease severity.

  8. Optical-resolution photoacoustic imaging through thick tissue with a thin capillary as a dual optical-in acoustic-out waveguide

    CERN Document Server

    Simandoux, Olivier; Gateau, Jerome; Huignard, Jean-Pierre; Moser, Christophe; Psaltis, Demetri; Bossy, Emmanuel

    2015-01-01

    We demonstrate the ability to guide high-frequency photoacoustic waves through thick tissue with a water-filled silica-capillary (150 \\mu m inner diameter and 30 mm long). An optical-resolution photoacoustic image of a 30 \\mu m diameter absorbing nylon thread was obtained by guiding the acoustic waves in the capillary through a 3 cm thick fat layer. The transmission loss through the capillary was about -20 dB, much lower than the -120 dB acoustic attenuation through the fat layer. The overwhelming acoustic attenuation of high-frequency acoustic waves by biological tissue can therefore be avoided by the use of a small footprint capillary acoustic waveguide for remote detection. We finally demonstrate that the capillary can be used as a dual optical-in acoustic-out waveguide, paving the way for the development of minimally invasive optical-resolution photoacoustic endoscopes free of any acoustic or optical elements at their imaging tip.

  9. Ex vivo imaging of human thyroid pathology using integrated optical coherence tomography and optical coherence microscopy

    Science.gov (United States)

    Zhou, Chao; Wang, Yihong; Aguirre, Aaron D.; Tsai, Tsung-Han; Cohen, David W.; Connolly, James L.; Fujimoto, James G.

    2010-01-01

    We evaluate the feasibility of optical coherence tomography (OCT) and optical coherence microscopy (OCM) for imaging of benign and malignant thyroid lesions ex vivo using intrinsic optical contrast. 34 thyroid gland specimens are imaged from 17 patients, covering a spectrum of pathology ranging from normal thyroid to benign disease/neoplasms (multinodular colloid goiter, Hashimoto's thyroiditis, and follicular adenoma) and malignant thyroid tumors (papillary carcinoma and medullary carcinoma). Imaging is performed using an integrated OCT and OCM system, with <4 μm axial resolution (OCT and OCM), and 14 μm (OCT) and <2 μm (OCM) transverse resolution. The system allows seamless switching between low and high magnifications in a way similar to traditional microscopy. Good correspondence is observed between optical images and histological sections. Characteristic features that suggest malignant lesions, such as complex papillary architecture, microfollicules, psammomatous calcifications, or replacement of normal follicular architecture with sheets/nests of tumor cells, can be identified from OCT and OCM images and are clearly differentiable from normal or benign thyroid tissues. With further development of needle-based imaging probes, OCT and OCM could be promising techniques to use for the screening of thyroid nodules and to improve the diagnostic specificity of fine needle aspiration evaluation.

  10. Endocular ophthalmoscope: miniaturization and optical imaging quality

    Science.gov (United States)

    Rol, Pascal O.; Beck, Dominik; Niederer, Peter F.

    1991-06-01

    Endoscopy is a novel method of observation in ocular surgery. It allows a direct viewing of certain internal structures of the eye which can not be seen through conventional slit lamp/microscope arrangements like the back side of the iris, the posterior chamber or the fixation area of an IOL. In addition such an instrument is useful in exploratory orbital surgery because it allows for examination of the scleral wall, the 6 motor muscles and the optic nerve sheet with minimal trauma to the eye. An endoscopic system can therefore be helpful to check regions which can not be reached easily during surgery, such as the ciliary body or the pars plana. When a transparent structure of the eye becomes turbid, e.g., a hazy cornea, observation is impaired and endoscopy could also provide a solution though it is an invasive method.

  11. Multi-scale volumetric cell and tissue imaging based on optical projection tomography (Conference Presentation)

    Science.gov (United States)

    Ban, Sungbea; Cho, Nam Hyun; Ryu, Yongjae; Jung, Sunwoo; Vavilin, Andrey; Min, Eunjung; Jung, Woonggyu

    2016-04-01

    Optical projection tomography is a new optical imaging method for visualizing small biological specimens in three dimension. The most important advantage of OPT is to fill the gap between MRI and confocal microscope for the specimen having the range of 1-10 mm. Thus, it has been mainly used for whole-mount small animals and developmental study since this imaging modality was developed. The ability of OPT delivering anatomical and functional information of relatively large tissue in 3D has made it a promising platform in biomedical research. Recently, the potential of OPT spans its coverage to cellular scale. Even though there are increasing demand to obtain better understanding of cellular dynamics, only few studies to visualize cellular structure, shape, size and functional morphology over tissue has been investigated in existing OPT system due to its limited field of view. In this study, we develop a novel optical imaging system for 3D cellular imaging with OPT integrated with dynamic focusing technique. Our tomographic setup has great potential to be used for identifying cell characteristic in tissue because it can provide selective contrast on dynamic focal plane allowing for fluorescence as well as absorption. While the dominant contrast of optical imaging technique is to use the fluorescence for detecting certain target only, the newly developed OPT system will offer considerable advantages over currently available method when imaging cellar molecular dynamics by permitting contrast variation. By achieving multi-contrast, it is expected for this new imaging system to play an important role in delivering better cytological information to pathologist.

  12. Magnetic resonance imaging in optic nerve lesions with multiple sclerosis

    International Nuclear Information System (INIS)

    Magnetic resonance imaging (MRI) of the optic nerve was performed in 10 patients with multiple sclerosis (MS) using short inversion time inversion recovery (STIR) pulse sequences, and the results were compared with the visual evoked potentials (VEP). The 10 patients had optic neuritis in the chronic or remitting phase together with additional symptoms or signs allowing a diagnosis of clinically definite or probable MS. Sixteen optic nerves were clinically affected and 4 were unaffected. MRI was performed using a 0.5 tesla supeconducting unit, and multiple continuous 5 mm coronal and axial STIR images were obtained. A lesion was judged to be present if a focal or diffuse area of increased signal intensity was detectd in the optic nerve. In VEP, a delay in peak latency or no P 100 component was judged to be abnormal. With regard to the clinically affected optic nerves, MRI revealed a region of increased signal intensity in 14/16 (88%) and the VEP was abnormal in 16/16 (100%). In the clinically unaffected optic nerves, MRI revealed an increased signal intensity in 2/4 (50%). One of these nerves had an abnormal VEP and the other had a VEP latency at the upper limit of normal. The VEP was abnormal in 1/4 (25%). In the clinically affected optic nerves, the degree of loss of visual acuity was not associated with the longitudinal extent of the lesions shown by MRI. The mean length was 17.5 mm in optic nerves with a slight disturbance of visual acuity and 15.0 mm in nerves with severe visual loss. MRI using STIR pulse sequences was found to be almost as sensitive as VEP in detecting both clinically affected and unaffected optic nerve lesions in patients with MS, and was useful in visualizing the location or size of the lesions. (author)

  13. SOFI Simulation Tool: A Software Package for Simulating and Testing Super-Resolution Optical Fluctuation Imaging

    Science.gov (United States)

    Sharipov, Azat; Geissbuehler, Stefan; Leutenegger, Marcel; Vandenberg, Wim; Dedecker, Peter; Hofkens, Johan; Lasser, Theo

    2016-01-01

    Super-resolution optical fluctuation imaging (SOFI) allows one to perform sub-diffraction fluorescence microscopy of living cells. By analyzing the acquired image sequence with an advanced correlation method, i.e. a high-order cross-cumulant analysis, super-resolution in all three spatial dimensions can be achieved. Here we introduce a software tool for a simple qualitative comparison of SOFI images under simulated conditions considering parameters of the microscope setup and essential properties of the biological sample. This tool incorporates SOFI and STORM algorithms, displays and describes the SOFI image processing steps in a tutorial-like fashion. Fast testing of various parameters simplifies the parameter optimization prior to experimental work. The performance of the simulation tool is demonstrated by comparing simulated results with experimentally acquired data. PMID:27583365

  14. Live dynamic imaging and analysis of developmental cardiac defects in mouse models with optical coherence tomography

    Science.gov (United States)

    Lopez, Andrew L.; Wang, Shang; Garcia, Monica; Valladolid, Christian; Larin, Kirill V.; Larina, Irina V.

    2015-03-01

    Understanding mouse embryonic development is an invaluable resource for our interpretation of normal human embryology and congenital defects. Our research focuses on developing methods for live imaging and dynamic characterization of early embryonic development in mouse models of human diseases. Using multidisciplinary methods: optical coherence tomography (OCT), live mouse embryo manipulations and static embryo culture, molecular biology, advanced image processing and computational modeling we aim to understand developmental processes. We have developed an OCT based approach to image live early mouse embryos (E8.5 - E9.5) cultured on an imaging stage and visualize developmental events with a spatial resolution of a few micrometers (less than the size of an individual cell) and a frame rate of up to hundreds of frames per second and reconstruct cardiodynamics in 4D (3D+time). We are now using these methods to study how specific embryonic lethal mutations affect cardiac morphology and function during early development.

  15. Visible-Light Tomography Using an Optical Imaging-System

    NARCIS (Netherlands)

    Ingesson, L. C.; Koning, J. J.; Donne, A. J. H.; D.C. Schram,

    1992-01-01

    A system for tomography in the wavelength range 200-1 100 nm has been designed for the Rijnhuizen Tokamak Project (RTP). The plasma is viewed from five directions in one poloidal plane with a total of 80 detectors. An optical imaging system consisting of two spherical mirrors for each viewing direct

  16. Gamma-Ray Focusing Optics for Small Animal Imaging

    Science.gov (United States)

    Pivovaroff, M. J.; Barber, W. C.; Craig, W. W.; Hasegawa, B. H.; Ramsey, B. D.; Taylor, C.

    2004-01-01

    There is a well-established need for high-resolution radionuclide imaging techniques that provide non-invasive measurement of physiological function in small animals. We, therefore, have begun developing a small animal radionuclide imaging system using grazing incidence mirrors to focus low-energy gamma-rays emitted by I-125, and other radionuclides. Our initial prototype optic, fabricated from thermally-formed glass, demonstrated a resolution of 1500 microns, consistent with the performance predicted by detailed simulations. More recently, we have begun constructing mirrors using a replication technique that reduces low spatial frequency errors in the mirror surface, greatly improving the resolution. Each technique offers particular advantages: e.g., multilayer coatings are easily deposited on glass, while superior resolution is possible with replicated optics. Scaling the results from our prototype optics, which only have a few nested shells, to system where the lens has a full complement of several tens of nested shells, a sensitivity of approx. 1 cps/micro Ci is possible, with the exact number dependent on system magnification and radionuclide species. (Higher levels of efficiency can be obtained with multi-optic imaging systems.) The gamma-ray lens will achieve a resolution as good as 100 microns, independent of the final sensitivity. The combination of high spatial resolution and modest sensitivity will enable in vivo single photon emission imaging studies in small animals.

  17. Flow Velocity Measurement by Image Processing of Optically Activated Tracers

    OpenAIRE

    Gharib, M.; Hernan, M. A.; Yavrouian, A. H.; Sarohia, V.

    1985-01-01

    A computerized flow visualization technique capable of quantifying the flow field automatically has been developed. This technique uses afterglowing effect of optically activated phosphorescent particles to retrieve vectorial information on each trace. By using this information, in conjunction with computer image processing, the flow field of a free surface transient vortex was investigated.

  18. The Phoenix Deep Survey: Optical and near infrared imaging catalogs

    CERN Document Server

    Sullivan, M; Afonso, J; Georgakakis, A; Chan, B; Cram, L; Mobasher, B; Almeida, C; Sullivan, Mark; Hopkins, Andrew; Afonso, Jose; Georgakakis, Antonis; Chan, Ben; Cram, Lawrence; Mobasher, Bahram; Almeida, Cesario

    2004-01-01

    The Phoenix Deep Survey is a multi-wavelength galaxy survey based on deep 1.4 GHz radio imaging (Hopkins et al., 2003). The primary goal of this survey is to investigate the properties of star formation in galaxies and to trace the evolution in those properties to a redshift z=1, covering a significant fraction of the age of the Universe. By compiling a sample of star-forming galaxies based on selection at radio wavelengths we eliminate possible biases due to dust obscuration, a significant issue when selecting objects at optical and ultraviolet wavelengths. In this paper, we present the catalogs and results of deep optical (UBVRI) and near-infrared (Ks) imaging of the deepest region of the existing decimetric radio imaging. The observations and data-processing are summarised and the construction of the optical source catalogs described, together with the details of the identification of candidate optical counterparts to the radio catalogs. Based on our UBVRIKs imaging, photometric redshift estimates for the ...

  19. Functionalized Conjugated Polyelectrolytes for Biological Sensing and Imaging.

    Science.gov (United States)

    Zhan, Ruoyu; Liu, Bin

    2016-06-01

    Conjugated polyelectrolytes (CPEs) are macromolecules with highly delocalized π-conjugated backbones and charged side chains, which are unique types of active materials, with wide applications in optoelectronics, sensing, imaging, and therapy. By attaching specific groups (e.g., recognition elements, magnetic resonance (MR) contrast agents, gene carriers, and drugs) to the side chain or backbone of CPEs, functionalized CPEs have been developed and used for specific biological applications. In this account, we summarize the recent progress of functionalized CPEs with respect to their synthesis and biomedical applications. Future perspectives are also discussed at the end. PMID:27230631

  20. Computational imaging: Combining optics, computation and perception

    OpenAIRE

    Masiá Corcoy, Belén; Gutiérrez Pérez, Diego

    2013-01-01

    Esta tesis presenta contribuciones en distintas partes del pipeline de imagen, desde la captura de imágenes, hasta la presentación de las mismas en un monitor u otro dispositivo, pasando por el procesamiento que se produce en los pasos intermedios. Englobamos las distintas técnicas y algoritmos utilizados en las diferentes etapas bajo el concepto de Imagen Computacional (Computational Imaging en inglés). Los temas son diversos, pero el motor e hilo conductor ha sido la idea de que una combina...

  1. The development of field-emission scanning electron microscopy for imaging biological surfaces.

    Science.gov (United States)

    Pawley, J

    1997-08-01

    This article traces the important milestones in the development of high-resolution, field-emission, scanning electron microscopes (SEM). Such instruments are now capable of producing images of the surfaces of biological specimens that rival, in terms of resolution and contrast, those produced by conventional transmission electron microscopy (TEM). Even though one of the first instruments to produce a useful transmission electron microscope image was, in fact, an early scanning microscope, TEM reached its full potential for biological imaging almost 30 years sooner than did SEM. The main reason for this slow rate of development is the dependence of any scanning technique on source brightness. The only suitable electron source was the field-emission source, originally developed in the 1930's. Making this into a stable and reliable electron source for microscopy required many technical barriers to be overcome. An additional delay may have been caused by the great success that attended the introduction of early SEM instruments. These instruments which employed heated, tungsten hairpin cathodes, were inexpensive and reliable, but they that were also far from optimal in terms of optical performance. Their market success may have engendered the sense of inertia and complacency that further delayed the introduction of low aberrations objective lenses and field-emission sources for almost 20 years after they were first introduced to electron microscopy. In addition, the fact that these early SEMs accustomed users to operating with a much higher beam voltage than was either necessary or wise, lead many to assume that the SEM was incapable of producing high-resolution images of biological surfaces. This left them open to fascination with newer ahd slower techniques that, on balance, were less suitable than optimized SEM for most of their imaging needs. In parallel to these developments in instrumentation, major improvements were also made in the way that the specimen surface

  2. Uncooled Optically Readable Bimaterial Micro-Cantilever Infrared Imaging Device

    Institute of Scientific and Technical Information of China (English)

    段志辉; 张青川; 伍小平; 潘亮; 陈大鹏; 王玮冰; 郭哲颖

    2003-01-01

    We develop an uncooled infrared imaging device that contains a SiN-Au bimaterial micro-cantilever arrays detector and an optical read-out section. The detector converts the incident infrared radiation to the cantilever inclination angles, and the optical read-out section converts these angles directly to a visible image through an optical filtering operation to the spectra of the cantilever arrays with a knife-edge filter. The present results with the 140 × 98 cantilever arrays and the 8-bit A/D quantizer suggest that the objects at the temperature of 250℃ at the distance as far as / m can be detected and the noise-equivalent temperature difference (NETD)of the device is about 10K. The further improvement of NETD is expected to approach about 14mk with the optimized cantilever design and 12-bit quantizer.

  3. Alternative optical concept for electron cyclotron emission imaging

    Energy Technology Data Exchange (ETDEWEB)

    Liu, J. X., E-mail: jsliu9@berkeley.edu [Department of Physics, University of California Berkeley, Berkeley, California 94720 (United States); Milbourne, T. [Department of Physics, College of William and Mary, Williamsburg, Virginia 23185 (United States); Bitter, M.; Delgado-Aparicio, L.; Dominguez, A.; Efthimion, P. C.; Hill, K. W.; Kramer, G. J.; Kung, C.; Pablant, N. A.; Tobias, B. [Princeton Plasma Physics Laboratory, Princeton, New Jersey 08540 (United States); Kubota, S. [Department of Physics, University of California Los Angeles, Los Angeles, California 90095 (United States); Kasparek, W. [Department of Electrical Engineering, University of Stuttgart, Stuttgart (Germany); Lu, J. [Department of Physics, Chongqing University, Chongqing 400044 (China); Park, H. [Ulsan National Institute of Science and Technology, Ulsan 689-798 (Korea, Republic of)

    2014-11-15

    The implementation of advanced electron cyclotron emission imaging (ECEI) systems on tokamak experiments has revolutionized the diagnosis of magnetohydrodynamic (MHD) activities and improved our understanding of instabilities, which lead to disruptions. It is therefore desirable to have an ECEI system on the ITER tokamak. However, the large size of optical components in presently used ECEI systems have, up to now, precluded the implementation of an ECEI system on ITER. This paper describes a new optical ECEI concept that employs a single spherical mirror as the only optical component and exploits the astigmatism of such a mirror to produce an image with one-dimensional spatial resolution on the detector. Since this alternative approach would only require a thin slit as the viewing port to the plasma, it would make the implementation of an ECEI system on ITER feasible. The results obtained from proof-of-principle experiments with a 125 GHz microwave system are presented.

  4. Nanodiamond Landmarks for Subcellular Multimodal Optical and Electron Imaging

    CERN Document Server

    Zurbuchen, Mark A; Kohan, Sirus A; Leung, Belinda; Bouchard, Louis-S

    2015-01-01

    There is a growing need for biolabels that can be used in both optical and electron microscopies, are non-cytotoxic, and do not photobleach. Such biolabels could enable targeted nanoscale imaging of sub-cellular structures, and help to establish correlations between conjugation-delivered biomolecules and function. Here we demonstrate a subcellular multi-modal imaging methodology that enables localization of inert particulate probes, consisting of nanodiamonds having fluorescent nitrogen-vacancy centers. These are functionalized to target specific structures, and are observable by both optical and electron microscopies. Nanodiamonds targeted to the nuclear pore complex are rapidly localized in electron-microscopy diffraction mode to enable "zooming-in" to regions of interest for detailed structural investigations. Optical microscopies reveal nanodiamonds for in-vitro tracking or uptake-confirmation. The approach is general, works down to the single nanodiamond level, and can leverage the unique capabilities of...

  5. Reflective optical imaging system for extreme ultraviolet wavelengths

    Science.gov (United States)

    Viswanathan, V.K.; Newnam, B.E.

    1993-05-18

    A projection reflection optical system has two mirrors in a coaxial, four reflection configuration to reproduce the image of an object. The mirrors have spherical reflection surfaces to provide a very high resolution of object feature wavelengths less than 200 [mu]m, and preferably less than 100 [mu]m. An image resolution of features less than 0.05-0.1 [mu]m, is obtained over a large area field; i.e., 25.4 mm [times] 25.4 mm, with a distortion less than 0.1 of the resolution over the image field.

  6. Optical clearing and multiphoton imaging of paraffin-embedded specimens

    Science.gov (United States)

    Wilson, Jesse W.; Degan, Simone; Fischer, Martin C.; Warren, Warren S.

    2013-02-01

    New labeling, imaging, or analysis tools could provide new retrospective insights when applied to archived, paraffin-embedded samples. Deep-tissue multiphoton microscopy of paraffin-embedded specimens is achieved using optical clearing with mineral oil. We tested a variety of murine tissue specimens including skin, lung, spleen, kidney, and heart, acquiring multiphoton autofluorescence and second-harmonic generation, and pump-probe images This technique introduces the capability for non-destructive 3-dimensional microscopic imaging of existing archived pathology specimens, enabling retrospective studies.

  7. Multimodal optical imaging of mouse Ischemic cortex

    Science.gov (United States)

    Jones, Phillip B.; Shin, Hwa Kyuong; Dunn, Andrew K.; Hyman, Bradley T.; Boas, David A.; Moskowitz, Michael A.; Ayata, Cenk

    2005-11-01

    Real time investigation of cerebral blood flow (CBF), and oxy/deoxy hemoglobin volume (HbO,HbR) dynamics has been difficult until recently due to limited spatial and temporal resolution of techniques like laser Doppler flowmetry and MRI. This is especially true for studies of disease models in small animals, owing to the fine structure of the cerebral vasculature. The combination of laser speckle flowmetry (LSF) and multi-spectral reflectance imaging (MSRI) yields high resolution spatio-temporal maps of hemodynamic changes in response to events such as sensory stimuli or arterial occlusion. Ischemia was induced by distal occlusion of the medial cerebral artery (dMCAO). Rapid changes in CBF, HbO, and HbR during the acute phase were captured with high temporal and spatial resolution through the intact skull. Hemodynamic changes that were correlated with vasoconstrictive events, peri-infarct spreading depressions (PISD), were observed. These experiments demonstrate the utility of LSF and Multi-spectral reflectance imaging (MSRI) in mouse disease models.

  8. In-vivo optical imaging and spectroscopy of cerebral hemodynamics

    Science.gov (United States)

    Zhou, Chao

    Functional optical imaging techniques, such as diffuse optical imaging and spectroscopy and laser speckle imaging (LSI), were used in research and clinical settings to measure cerebral hemodynamics. In this thesis, theoretical and experimental developments of the techniques and their in-vivo applications ranging from small animals to adult humans are demonstrated. Near infrared diffuse optical techniques non-invasively measure hemoglobin concentrations, blood oxygen saturation (diffuse reflectance spectroscopy, DRS) and blood flow (diffuse correlation spectroscopy, DCS) in deep tissues, e.g. brain. A noise model was derived for DCS measurements. Cerebral blood flow (CBF) measured with DCS was validated with arterial-spin-labeling MRI. Three-dimensional CBF tomography was obtained during cortical spreading depression from a rat using the optimized diffuse correlation tomographic method. Cerebral hemodynamics in newborn piglets after traumatic brain injury were continuously monitored optically for six hours to demonstrate the feasibility of using diffuse optical techniques as bedside patient monitors. Cerebral autoregulation in piglets and human stroke patients was demonstrated to be non-invasively assessable via the continuous DCS measurement. Significant differences of CBF responses to head-of-bead maneuvers were observed between the peri- and contra-infarct hemispheres in human stroke patients. A significant portion of patient population showed paradoxical CBF responses, indicating the importance of individualized stroke management. The development of a speckle noise model revealed the source of noise for LSI. LSI was then applied to study the acute functional recovery of the rat brain following transient brain ischemia. The spatial and temporal cerebral blood flow responses to functional stimulation were statistically quantified. The area of activation, and the temporal response to stimulation were found significantly altered by the ischemic insult, while the

  9. Optical imaging system-based real-time image saliency extraction method

    Science.gov (United States)

    Zhao, Jufeng; Gao, Xiumin; Chen, Yueting; Feng, Huajun

    2015-04-01

    Saliency extraction has become a popular topic in imaging science. One of the challenges in image saliency extraction is to detect the saliency content efficiently with a full-resolution saliency map. Traditional methods only involve computer calculation and thus result in limitations in computational speed. An optical imaging system-based visual saliency extraction method is developed to solve this problem. The optical system is built by effectively implementing an optical Fourier process with a Fourier lens to form two frequency planes for further operation. The proposed method combines optical components and computer calculations and mainly relies on frequency selection with precise pinholes on the frequency planes to efficiently produce a saliency map. Comparison shows that the method is suitable for extracting salient information and operates in real time to generate a full-resolution saliency map with good boundaries.

  10. Multiscale imaging of human thyroid pathologies using integrated optical coherence tomography (OCT) and optical coherence microscopy (OCM)

    Science.gov (United States)

    Zhou, Chao; Wang, Yihong; Aguirre, Aaron D.; Tsai, Tsung-Han; Cohen, David W.; Connolly, James L.; Fujimoto, James G.

    2010-02-01

    We evaluate the feasibility of optical coherence tomography (OCT) and optical coherence microscopy (OCM) for imaging of benign and malignant thyroid lesions ex vivo using intrinsic optical contrast. Thirty four thyroid gland specimens were imaged from 17 patients, covering a spectrum of pathology, ranging from normal thyroid to neoplasia and benign disease. The integrated OCT and OCM imaging system allows seamlessly switching between low and high magnifications, in a way similar to traditional microscopy. Good correspondence was observed between optical images and histological sections. The results provide a basis for interpretation of future OCT and OCM images of the thyroid tissues and suggest the possibility of future in vivo evaluation of thyroid pathology.

  11. Optical Imaging for Stem Cell Differentiation to Neuronal Lineage

    Energy Technology Data Exchange (ETDEWEB)

    Hwang, Do Won; Lee, Dong Soo [Seoul National Univ., Seoul (Korea, Republic of)

    2012-03-15

    In regenerative medicine, the prospect of stem cell therapy hold great promise for the recovery of injured tissues and effective treatment of intractable diseases. Tracking stem cell fate provides critical information to understand and evaluate the success of stem cell therapy. The recent emergence of in vivo noninvasive molecular imaging has enabled assessment of the behavior of grafted stem cells in living subjects. In this review, we provide an overview of current optical imaging strategies based on cell or tissue specific reporter gene expression and of in vivo methods to monitor stem cell differentiation into neuronal lineages. These methods use optical reporters either regulated by neuron-specific promoters or containing neuron-specific microRNA binding sites. Both systems revealed dramatic changes in optical reporter imaging signals in cells differentiating a yeast GAL4 amplification system or an engineering-enhanced luciferase reported gene. Furthermore, we propose an advanced imaging system to monitor neuronal differentiation during neurogenesis that uses in vivo multiplexed imaging techniques capable of detecting several targets simultaneously.

  12. Adaptive optics with pupil tracking for high resolution retinal imaging.

    Science.gov (United States)

    Sahin, Betul; Lamory, Barbara; Levecq, Xavier; Harms, Fabrice; Dainty, Chris

    2012-02-01

    Adaptive optics, when integrated into retinal imaging systems, compensates for rapidly changing ocular aberrations in real time and results in improved high resolution images that reveal the photoreceptor mosaic. Imaging the retina at high resolution has numerous potential medical applications, and yet for the development of commercial products that can be used in the clinic, the complexity and high cost of the present research systems have to be addressed. We present a new method to control the deformable mirror in real time based on pupil tracking measurements which uses the default camera for the alignment of the eye in the retinal imaging system and requires no extra cost or hardware. We also present the first experiments done with a compact adaptive optics flood illumination fundus camera where it was possible to compensate for the higher order aberrations of a moving model eye and in vivo in real time based on pupil tracking measurements, without the real time contribution of a wavefront sensor. As an outcome of this research, we showed that pupil tracking can be effectively used as a low cost and practical adaptive optics tool for high resolution retinal imaging because eye movements constitute an important part of the ocular wavefront dynamics.

  13. Optical imaging: a newer screening tool in oncological practice

    International Nuclear Information System (INIS)

    Full text: The decrease in the incidence and the mortality of cancer has ushered in a palpable excitement in the oncology community. The recent and significant advances in the care of cancer patients is consequent to the developments in the fields of imaging, molecular diagnostics and n'folecularly targeted therapies. Targeted and Activable Optical imaging is a rapidly expanding discipline of molecular imaging designed to detect very small clusters of cancer cells at its earliest stage. This modality has higher sensitivity and is destined to open new vistas in cancer screening and intra-operative guidance of resection of very small volume disease. Use of contrast is optional. Optical imaging can differentiate tumors from healthy tissue on the principle based on absorption of hemoglobin, found in higher abundance in vascular tumors. The only shortcoming being its non-use for whole body scanning and use in only areas accessible to direct imaging. The optical probes are innovative marvels for being activable and targetable have greater sensitivity and portability. They find their use in topical and intravenous use for screening of colon, bladder and tumors of tracheo-bronchial tree

  14. On the importance of image formation optics in the design of infrared spectroscopic imaging systems.

    Science.gov (United States)

    Mayerich, David; van Dijk, Thomas; Walsh, Michael J; Schulmerich, Matthew V; Carney, P Scott; Bhargava, Rohit

    2014-08-21

    Infrared spectroscopic imaging provides micron-scale spatial resolution with molecular contrast. While recent work demonstrates that sample morphology affects the recorded spectrum, considerably less attention has been focused on the effects of the optics, including the condenser and objective. This analysis is extremely important, since it will be possible to understand effects on recorded data and provides insight for reducing optical effects through rigorous microscope design. Here, we present a theoretical description and experimental results that demonstrate the effects of commonly-employed cassegranian optics on recorded spectra. We first combine an explicit model of image formation and a method for quantifying and visualizing the deviations in recorded spectra as a function of microscope optics. We then verify these simulations with measurements obtained from spatially heterogeneous samples. The deviation of the computed spectrum from the ideal case is quantified via a map which we call a deviation map. The deviation map is obtained as a function of optical elements by systematic simulations. Examination of deviation maps demonstrates that the optimal optical configuration for minimal deviation is contrary to prevailing practice in which throughput is maximized for an instrument without a sample. This report should be helpful for understanding recorded spectra as a function of the optics, the analytical limits of recorded data determined by the optical design, and potential routes for optimization of imaging systems.

  15. Stellar Intensity Interferometry: Prospects for sub-milliarcsecond optical imaging

    CERN Document Server

    Dravins, Dainis; Jensen, Hannes; Nuñez, Paul D

    2012-01-01

    Using kilometric arrays of air Cherenkov telescopes, intensity interferometry may increase the spatial resolution in optical astronomy by an order of magnitude, enabling images of rapidly rotating stars with structures in their circumstellar disks and winds, or mapping out patterns of nonradial pulsations across stellar surfaces. Intensity interferometry (pioneered by Hanbury Brown and Twiss) connects telescopes only electronically, and is practically insensitive to atmospheric turbulence and optical imperfections, permitting observations over long baselines and through large airmasses, also at short optical wavelengths. The required large telescopes with very fast detectors are becoming available as arrays of air Cherenkov telescopes, distributed over a few square km. Digital signal handling enables very many baselines to be synthesized, while stars are tracked with electronic time delays, thus synthesizing an optical interferometer in software. Simulated observations indicate limiting magnitudes around m(v)...

  16. Imaging of oral pathological tissue using optical coherence tomography

    Science.gov (United States)

    Canjau, Silvana; Todea, Carmen; Sinescu, Cosmin; Duma, Virgil-Florin; Topala, Florin I.; Podoleanu, Adrian G.

    2014-01-01

    Oral squamous cell carcinoma (OSCC) constitutes 90% of oral cancer. Early detection is a cornerstone to improve survival. Interaction of light with tissues may highlight changes in tissue structure and metabolism. We propose optical coherence tomography (OCT), as a non-invasive diagnosis method, being a new high-resolution optical technique that permits tri-dimensional (3-D), real-time imaging of near surface abnormalities in complex tissues. In this study half of the excisional biopsy was directed to the pathologist and the other half was assigned for OCT investigation. Histopathology validated the results. Areas of OSCC of the buccal mucosa were identified in the OCT images. The elements obserced included extensive epithelial down-growth, the disruption of the basement membrane, with areas of erosion, an epithelial layer that was highly variable in thickness and invasion into the sub-epithelial layers. Therefore, OCT appears to be a highly promising imaging modality.

  17. TV-L1 Optical Flow for Vector Valued Images

    DEFF Research Database (Denmark)

    Rakêt, Lars Lau; Roholm, Lars; Nielsen, Mads;

    2011-01-01

    a generalized algorithm that works on vector valued images, by means of a generalized projection step. We give examples of calculations of flows for a number of multi- dimensional constancy assumptions, e.g. gradient and RGB, and show how the developed methodology expands to any kind of vector valued images......The variational TV-L1 framework has become one of the most popular and successful approaches for calculating optical flow. One reason for the popularity is the very appealing properties of the two terms in the energy formulation of the problem, the robust L1-norm of the data fidelity term combined...... with the total variation (TV) regular- ization that smoothes the flow, but preserve strong discontinuities such as edges. Specifically the approach of Zach et al. [1] has provided a very clean and efficient algorithm for calculating TV-L1 optical flows between grayscale images. In this paper we propose...

  18. Integrated optical coherence tomography and optical coherence microscopy imaging of human pathology

    Science.gov (United States)

    Lee, Hsiang-Chieh; Zhou, Chao; Wang, Yihong; Aquirre, Aaron D.; Tsai, Tsung-Han; Cohen, David W.; Connolly, James L.; Fujimoto, James G.

    2010-02-01

    Excisional biopsy is the current gold standard for disease diagnosis; however, it requires a relatively long processing time and it may also suffer from unacceptable false negative rates due to sampling errors. Optical coherence tomography (OCT) is a promising imaging technique that provide real-time, high resolution and three-dimensional (3D) images of tissue morphology. Optical coherence microscopy (OCM) is an extension of OCT, combining both the coherence gating and the confocal gating techniques. OCM imaging achieves cellular resolution with deeper imaging depth compared to confocal microscopy. An integrated OCT/OCM imaging system can provide co-registered multiscale imaging of tissue morphology. 3D-OCT provides architectural information with a large field of view and can be used to find regions of interest; while OCM provides high magnification to enable cellular imaging. The integrated OCT/OCM system has an axial resolution of kidney (19), were imaged with OCT and OCM within 2 to 6 hours after excision. The images were compared with H & E histology to identify characteristic features useful for disease diagnosis. The feasibility of visualizing human pathology using integrated OCT/OCM was demonstrated in the pathology laboratory settings.

  19. Longitudinal Imaging of Heart Development With Optical Coherence Tomography

    Science.gov (United States)

    Jenkins, Michael W.; Watanabe, Michiko; Rollins, Andrew M.

    2015-01-01

    Optical coherence tomography (OCT) has great potential for deciphering the role of mechanics in normal and abnormal heart development. OCT images tissue microstructure and blood flow deep into the tissue (1–2mm) at high spatiotemporal resolutions allowing unprecedented images of the developing heart. Here, we review the advancement of OCT technology to image heart development and report some of our recent findings utilizing OCT imaging under environmental control for longitudinal imaging. Precise control of the environment is absolutely required in longitudinal studies that follow the growth of the embryo or studies comparing normal versus perturbed heart development to obtain meaningful in vivo results. These types of studies are essential to tease out the influence of cardiac dynamics on molecular expression and their role in the progression of congenital heart defects. PMID:26236147

  20. High-throughput Biological Cell Classification Featuring Real-time Optical Data Compression

    CERN Document Server

    Jalali, Bahram; Chen, Claire L

    2015-01-01

    High throughput real-time instruments are needed to acquire large data sets for detection and classification of rare events. Enabled by the photonic time stretch digitizer, a new class of instruments with record throughputs have led to the discovery of optical rogue waves [1], detection of rare cancer cells [2], and the highest analog-to-digital conversion performance ever achieved [3]. Featuring continuous operation at 100 million frames per second and shutter speed of less than a nanosecond, the time stretch camera is ideally suited for screening of blood and other biological samples. It has enabled detection of breast cancer cells in blood with record, one-in-a-million, sensitivity [2]. Owing to their high real-time throughput, instruments produce a torrent of data - equivalent to several 4K movies per second - that overwhelm data acquisition, storage, and processing operations. This predicament calls for technologies that compress images in optical domain and in real-time. An example of this, based on war...

  1. Image-based surface matching algorithm oriented to structural biology.

    Science.gov (United States)

    Merelli, Ivan; Cozzi, Paolo; D'Agostino, Daniele; Clematis, Andrea; Milanesi, Luciano

    2011-01-01

    Emerging technologies for structure matching based on surface descriptions have demonstrated their effectiveness in many research fields. In particular, they can be successfully applied to in silico studies of structural biology. Protein activities, in fact, are related to the external characteristics of these macromolecules and the ability to match surfaces can be important to infer information about their possible functions and interactions. In this work, we present a surface-matching algorithm, based on encoding the outer morphology of proteins in images of local description, which allows us to establish point-to-point correlations among macromolecular surfaces using image-processing functions. Discarding methods relying on biological analysis of atomic structures and expensive computational approaches based on energetic studies, this algorithm can successfully be used for macromolecular recognition by employing local surface features. Results demonstrate that the proposed algorithm can be employed both to identify surface similarities in context of macromolecular functional analysis and to screen possible protein interactions to predict pairing capability. PMID:21566253

  2. Method to improve the performance of reflectance diffuse optical imaging based on polygonal optical fibers arrangement

    Institute of Scientific and Technical Information of China (English)

    Weitao Li; Zhiyu Qian; Ting Li

    2009-01-01

    In order to improve the performance of reflectance diffuse optical imaging(rDOI),a novel polynomial geometry(PG)of optical fibers arrangement is proposed.Polynomial geometry is based on the hexagonal geometry(HG)and multicentered double-density(MD)mode.The overlapping sensitivity matrix,area ratio(AR),reconstruction image,two-absorber model,arid contrast-to-noise ratio(CNR)in different depths are used to evaluate the performance of PG.The other three geometries including HG,rectangular geometry(RG),and MD mode are also compared with PG.The deformation of the reconstruction images is evaluted by circular ratio(CR).The results prove that the proposed PG has high performance and minimum deformation in quality of reconstruction image in rDOI.

  3. Extraction of optical scattering parameters and attenuation compensation in optical coherence tomography images of multi-layered tissue structures

    DEFF Research Database (Denmark)

    Thrane, Lars; Frosz, Michael Henoch; Tycho, Andreas;

    2004-01-01

    A recently developed analytical optical coherence tomography (OCT) model [Thrane et al., J. Opt. Soc. Am. A 17, 484 (2000)] allows the extraction of optical scattering parameters from OCT images, thereby permitting attenuation compensation in those images. By expanding this theoretical model, we......, and the results hold promise for expanding the functional imaging capabilities of OCT....

  4. Hybrid Microscopy: Enabling Inexpensive High-Performance Imaging through Combined Physical and Optical Magnifications

    Science.gov (United States)

    Zhang, Yu Shrike; Chang, Jae-Byum; Alvarez, Mario Moisés; Trujillo-de Santiago, Grissel; Aleman, Julio; Batzaya, Byambaa; Krishnadoss, Vaishali; Ramanujam, Aishwarya Aravamudhan; Kazemzadeh-Narbat, Mehdi; Chen, Fei; Tillberg, Paul W.; Dokmeci, Mehmet Remzi; Boyden, Edward S.; Khademhosseini, Ali

    2016-03-01

    To date, much effort has been expended on making high-performance microscopes through better instrumentation. Recently, it was discovered that physical magnification of specimens was possible, through a technique called expansion microscopy (ExM), raising the question of whether physical magnification, coupled to inexpensive optics, could together match the performance of high-end optical equipment, at a tiny fraction of the price. Here we show that such “hybrid microscopy” methods—combining physical and optical magnifications—can indeed achieve high performance at low cost. By physically magnifying objects, then imaging them on cheap miniature fluorescence microscopes (“mini-microscopes”), it is possible to image at a resolution comparable to that previously attainable only with benchtop microscopes that present costs orders of magnitude higher. We believe that this unprecedented hybrid technology that combines expansion microscopy, based on physical magnification, and mini-microscopy, relying on conventional optics—a process we refer to as Expansion Mini-Microscopy (ExMM)—is a highly promising alternative method for performing cost-effective, high-resolution imaging of biological samples. With further advancement of the technology, we believe that ExMM will find widespread applications for high-resolution imaging particularly in research and healthcare scenarios in undeveloped countries or remote places.

  5. Optical imaging of individual biomolecules in densely packed clusters

    Science.gov (United States)

    Dai, Mingjie; Jungmann, Ralf; Yin, Peng

    2016-09-01

    Recent advances in fluorescence super-resolution microscopy have allowed subcellular features and synthetic nanostructures down to 10-20 nm in size to be imaged. However, the direct optical observation of individual molecular targets (∼5 nm) in a densely packed biomolecular cluster remains a challenge. Here, we show that such discrete molecular imaging is possible using DNA-PAINT (points accumulation for imaging in nanoscale topography)—a super-resolution fluorescence microscopy technique that exploits programmable transient oligonucleotide hybridization—on synthetic DNA nanostructures. We examined the effects of a high photon count, high blinking statistics and an appropriate blinking duty cycle on imaging quality, and developed a software-based drift correction method that achieves root mean squared) over hours. This allowed us to image a densely packed triangular lattice pattern with ∼5 nm point-to-point distance and to analyse the DNA origami structural offset with ångström-level precision (2 Å) from single-molecule studies. By combining the approach with multiplexed exchange-PAINT imaging, we further demonstrated an optical nanodisplay with 5 × 5 nm pixel size and three distinct colours with <1 nm cross-channel registration accuracy.

  6. Organising multi-dimensional biological image information: the BioImage Database.

    Science.gov (United States)

    Carazo, J M; Stelzer, E H; Engel, A; Fita, I; Henn, C; Machtynger, J; McNeil, P; Shotton, D M; Chagoyen, M; de Alarcón, P A; Fritsch, R; Heymann, J B; Kalko, S; Pittet, J J; Rodriguez-Tomé, P; Boudier, T

    1999-01-01

    Nowadays it is possible to unravel complex information at all levels of cellular organization by obtaining multi-dimensional image information. At the macromolecular level, three-dimensional (3D) electron microscopy, together with other techniques, is able to reach resolutions at the nanometer or subnanometer level. The information is delivered in the form of 3D volumes containing samples of a given function, for example, the electron density distribution within a given macromolecule. The same situation happens at the cellular level with the new forms of light microscopy, particularly confocal microscopy, all of which produce biological 3D volume information. Furthermore, it is possible to record sequences of images over time (videos), as well as sequences of volumes, bringing key information on the dynamics of living biological systems. It is in this context that work on BioImage started two years ago, and that its first version is now presented here. In essence, BioImage is a database specifically designed to contain multi-dimensional images, perform queries and interactively work with the resulting multi-dimensional information on the World Wide Web, as well as accomplish the required cross-database links. Two sister home pages of BioImage can be accessed at http://www. bioimage.org and http://www-embl.bioimage.org

  7. New variational image decomposition model for simultaneously denoising and segmenting optical coherence tomography images

    International Nuclear Information System (INIS)

    Optical coherence tomography (OCT) imaging plays an important role in clinical diagnosis and monitoring of diseases of the human retina. Automated analysis of optical coherence tomography images is a challenging task as the images are inherently noisy. In this paper, a novel variational image decomposition model is proposed to decompose an OCT image into three components: the first component is the original image but with the noise completely removed; the second contains the set of edges representing the retinal layer boundaries present in the image; and the third is an image of noise, or in image decomposition terms, the texture, or oscillatory patterns of the original image. In addition, a fast Fourier transform based split Bregman algorithm is developed to improve computational efficiency of solving the proposed model. Extensive experiments are conducted on both synthesised and real OCT images to demonstrate that the proposed model outperforms the state-of-the-art speckle noise reduction methods and leads to accurate retinal layer segmentation. (paper)

  8. Imaging of the Macula Indicates Early Completion of Structural Deficit in Autosomal-Dominant Optic Atrophy

    DEFF Research Database (Denmark)

    Rönnbäck, Cecilia; Milea, Dan; Larsen, Michael

    2013-01-01

    Optical coherence tomography (OCT) enables 3-dimensional imaging of the retina, including the layer of ganglion cells that supplies the optic nerve with its axons. We tested OCT as means of diagnosing and phenotyping autosomal-dominant optic atrophy (ADOA)....

  9. Increasing Linear Dynamic Range of Commercial Digital Photocamera Used in Imaging Systems with Optical Coding

    OpenAIRE

    Konnik, M. V.; Manykin, E. A.; Starikov, S. N.

    2008-01-01

    Methods of increasing linear optical dynamic range of commercial photocamera for optical-digital imaging systems are described. Use of such methods allows to use commercial photocameras for optical measurements. Experimental results are reported.

  10. Biological inspiration in optics and photonics: harnessing nature's light manipulation strategies for multifunctional optical materials (Conference Presentation)

    Science.gov (United States)

    Kolle, Mathias; Sandt, Joseph D.; Nagelberg, Sara N.; Zarzar, Lauren D.; Kreysing, Moritz; Vukusic, Peter

    2016-03-01

    The precise control of light-matter interactions is crucial for the majority of known biological organisms in their struggle to survive. Many species have evolved unique methods to manipulate light in their environment using a variety of physical effects including pigment-induced, spectrally selective absorption or light interference in photonic structures that consist of micro- and nano-periodic material morphologies. In their optical performance, many of the known biological photonic systems are subject to selection criteria not unlike the requirements faced in the development of novel optical technology. For this reason, biological light manipulation strategies provide inspiration for the creation of tunable, stimuli-responsive, adaptive material platforms that will contribute to the development of multifunctional surfaces and innovative optical technology. Biomimetic and bio-inspired approaches for the manufacture of photonic systems rely on self-assembly and bottom-up growth techniques often combined with conventional top-down manufacturing. In this regard, we can benefit in several ways from highly sophisticated material solutions that have convergently evolved in various organisms. We explore design concepts found in biological photonic architectures, seek to understand the mechanisms underlying morphogenesis of bio-optical systems, aim to devise viable manufacturing strategies that can benefit from insight in biological formation processes and the use of established synthetic routines alike, and ultimately strive to realize new photonic materials with tailor-made optical properties. This talk is focused on the identification of biological role model photonic architectures, a brief discussion of recently developed bio-inspired photonic structures, including mechano-sensitive color-tunable photonic fibers and reconfigurable fluid micro-lenses. Potentially, early-stage results in studying and harnessing the structure-forming capabilities of living cells that

  11. Optical manipulation of biological particles using LP21 mode in fiber

    International Nuclear Information System (INIS)

    We demonstrate the optical manipulation of biological particles using a low-order LP21 fiber mode. The focused four-lobed LP21 mode distribution was theoretically and experimentally found to be effective in optical tweezer applications, including selective cellular pick-up, pairing, grouping or separation, as well as rotation of cell dimers and clusters. Our proposed theoretical model estimates both the translational dragging force and rotational torque in good accordance with experimental data. With a simple all-fiber configuration, and low peak irradiation to target bioparticles, the proposed LP21 ‘optical chuck’ system has great application potential in biological test systems. (paper)

  12. Phi optics: from image to knowledge (Conference Presentation)

    Science.gov (United States)

    Chiritescu, Catalin

    2016-03-01

    Optical microscopy of live cells and tissues provides the main insight for life science researchers in academia and bio-pharma. The cells have very small features, are transparent, and require long term observations (hours to days) to measure the effects of drugs and diseases. New technologies - under the umbrella term of Quantitative Phase Imaging (QPI) - have come to light in the past decade to challenge and complement the current state of the art solutions that use fluorophores. Phi Optics talk will outline their lessons learned in the process of bringing an academic idea to the commercial space.

  13. Quantitative optical imaging of single-walled carbon nanotubes

    Science.gov (United States)

    Herman, Lihong H.

    The development and application of optical imaging tools and probing techniques have been the subject of exciting research. These tools and techniques allow for non-invasive, simple sample preparation and relatively fast measurement of electronic and optical properties. They also provided crucial information on optoelectronic device application and development. As the field of nanostructure research emerged, they were modified and employed to understand various properties of these structures at the diffraction limit of light. Carbon nanotubes, up to hundreds of micrometers long and several nanometers thin, are perfect for testing and demonstrating newly-developed optical measurement platforms for individual nanostructures, due to their heterogeneous nature. By employing two quantitative imaging techniques, wide-field on-chip Rayleigh scattering spectroscopy and spatial modulation confocal absorption microscopy, we investigate the optical properties of single-walled carbon nanotubes. These techniques allow us to obtain the Rayleigh scattering intensity, absolute absorption cross section, spatial resolution, and spectral information of single-walled carbon nanotubes. By probing the optical resonance of hundreds of single-walled carbon nanotubes in a single measurement, the first technique utilizes Rayleigh scattering mechanism to obtain the chirality of carbon nanotubes. The second technique, by using high numerical aperture oil immersion objective lenses, we measure the absolute absorption cross section of a single-walled carbon nanotube. Combining all the quantitative values obtained from these techniques, we observe various interesting and recently discovered physical behaviors, such as long range optical coupling and universal optical conductivity on resonance, and demonstrate the possibility of accurate quantitative absorption measurement for individual structures at nanometer scale.

  14. A novel non-imaging optics based Raman spectroscopy device for transdermal blood analyte measurement

    Directory of Open Access Journals (Sweden)

    Chae-Ryon Kong

    2011-09-01

    Full Text Available Due to its high chemical specificity, Raman spectroscopy has been considered to be a promising technique for non-invasive disease diagnosis. However, during Raman excitation, less than one out of a million photons undergo spontaneous Raman scattering and such weakness in Raman scattered light often require highly efficient collection of Raman scattered light for the analysis of biological tissues. We present a novel non-imaging optics based portable Raman spectroscopy instrument designed for enhanced light collection. While the instrument was demonstrated on transdermal blood glucose measurement, it can also be used for detection of other clinically relevant blood analytes such as creatinine, urea and cholesterol, as well as other tissue diagnosis applications. For enhanced light collection, a non-imaging optical element called compound hyperbolic concentrator (CHC converts the wide angular range of scattered photons (numerical aperture (NA of 1.0 from the tissue into a limited range of angles accommodated by the acceptance angles of the collection system (e.g., an optical fiber with NA of 0.22. A CHC enables collimation of scattered light directions to within extremely narrow range of angles while also maintaining practical physical dimensions. Such a design allows for the development of a very efficient and compact spectroscopy system for analyzing highly scattering biological tissues. Using the CHC-based portable Raman instrument in a clinical research setting, we demonstrate successful transdermal blood glucose predictions in human subjects undergoing oral glucose tolerance tests.

  15. Partnerships Drive Informatics Solutions for Biological Imaging at Ocean Observatories

    Science.gov (United States)

    Sosik, H. M.; Futrelle, J.; Maffei, A. R.

    2012-12-01

    In the big-data, era informatics-oriented partnerships are needed to achieve improved scientific results and understanding. Our teams' experience shows that formal methodologies to build interdisciplinary partnerships enable us to efficiently produce needed technological innovation. One-on-one partnerships between individual research scientists and informaticists provide a crucial building block for supporting larger, nested partnerships. We present one such partnership as an example. As ocean observatories mature, they produce data at a pace that threatens to overwhelm the capacity of individual researchers to manage and analyze it. Our multi-disciplinary team has addressed these challenges in the context of a study involving very large numbers (~1 billion) of images collected by Imaging FlowCytobot, an automated submersible flow cytometer that continuously images plankton at up to 10hz. These data provide novel insights into coastal ecosystem dynamics, including characterization of biological responses to environmental change and early warning of harmful algal blooms. In contrast with the traditional focus on technology adoption, we have instead emphasized building partnerships between oceanographers and computer scientists. In these partnerships we identify use cases, design solutions, develop prototypes, and refine them until they meet oceanographers' science needs. In doing so we have found that rapid and significant advances do not always require technological innovations, but rather effective communication, focus on science outcomes, and an iterative design and evaluation process. In this work we have adopted a methodology developed in the Tetherless World Constellation at Rensselaer Polytechnic Institute, a framework that has been used for several data-intensive earth science applications. The prototype system produced for Imaging FlowCytobot data provides simple and ubiquitous access to observational data and products via web services and includes a data

  16. Numerical correction of distorted images in full-field optical coherence tomography

    Science.gov (United States)

    Min, Gihyeon; Kim, Ju Wan; Choi, Woo June; Lee, Byeong Ha

    2012-03-01

    We propose a numerical method which can numerically correct the distorted en face images obtained with a full field optical coherence tomography (FF-OCT) system. It is shown that the FF-OCT image of the deep region of a biological sample is easily blurred or degraded because the sample has a refractive index (RI) much higher than its surrounding medium in general. It is analyzed that the focal plane of the imaging system is segregated from the imaging plane of the coherence-gated system due to the RI mismatch. This image-blurring phenomenon is experimentally confirmed by imaging the chrome pattern of a resolution test target through its glass substrate in water. Moreover, we demonstrate that the blurred image can be appreciably corrected by using the numerical correction process based on the Fresnel-Kirchhoff diffraction theory. The proposed correction method is applied to enhance the image of a human hair, which permits the distinct identification of the melanin granules inside the cortex layer of the hair shaft.

  17. Optical coherence tomography for embryonic imaging: a review

    Science.gov (United States)

    Raghunathan, Raksha; Singh, Manmohan; Dickinson, Mary E.; Larin, Kirill V.

    2016-05-01

    Embryogenesis is a highly complex and dynamic process, and its visualization is crucial for understanding basic physiological processes during development and for identifying and assessing possible defects, malformations, and diseases. While traditional imaging modalities, such as ultrasound biomicroscopy, micro-magnetic resonance imaging, and micro-computed tomography, have long been adapted for embryonic imaging, these techniques generally have limitations in their speed, spatial resolution, and contrast to capture processes such as cardiodynamics during embryogenesis. Optical coherence tomography (OCT) is a noninvasive imaging modality with micrometer-scale spatial resolution and imaging depth up to a few millimeters in tissue. OCT has bridged the gap between ultrahigh resolution imaging techniques with limited imaging depth like confocal microscopy and modalities, such as ultrasound sonography, which have deeper penetration but poorer spatial resolution. Moreover, the noninvasive nature of OCT has enabled live imaging of embryos without any external contrast agents. We review how OCT has been utilized to study developing embryos and also discuss advances in techniques used in conjunction with OCT to understand embryonic development.

  18. Optical color-image encryption in the diffractive-imaging scheme

    Science.gov (United States)

    Qin, Yi; Wang, Zhipeng; Pan, Qunna; Gong, Qiong

    2016-02-01

    By introducing the theta modulation technique into the diffractive-imaging-based optical scheme, we propose a novel approach for color image encryption. For encryption, a color image is divided into three channels, i.e., red, green and blue, and thereafter these components are appended by redundant data before being sent to the encryption scheme. The carefully designed optical setup, which comprises of three 4f optical architectures and a diffractive-imaging-based optical scheme, could encode the three plaintexts into a single noise-like intensity pattern. For the decryption, an iterative phase retrieval algorithm, together with a filter operation, is applied to extract the primary color images from the diffraction intensity map. Compared with previous methods, our proposal has successfully encrypted a color rather than grayscale image into a single intensity pattern, as a result of which the capacity and practicability have been remarkably enhanced. In addition, the performance and the security of it are also investigated. The validity as well as feasibility of the proposed method is supported by numerical simulations.

  19. Exploiting Molecular Biology by Time-Resolved Fluorescence Imaging

    Science.gov (United States)

    Müller, Francis; Fattinger, Christof

    Many contemporary biological investigations rely on highly sensitive in vitro assays for the analysis of specific molecules in biological specimens, and the main part of these assays depends on high-sensitivity fluorescence detection techniques for the final readout. The analyzed molecules and molecular interactions in the specimen need to be detected in the presence of other highly abundant biomolecules, while the analyzed molecules themselves are only present at nano-, pico-, or even femtomolar concentration.A short scientific rationale of fluorescence is presented. It emphasizes the use of fluorescent labels for sensitive assays in life sciences and specifies the main properties of an ideal fluorophore. With fluorescence lifetimes in the microsecond range and fluorescence quantum yield of 0.4 some water soluble complexes of Ruthenium like modified Ru(sulfobathophenanthroline) complexes fulfill these properties. They are outstanding fluorescent labels for ultrasensitive assays as illustrated in two examples, in drug discovery and in point of care testing.We discuss the fundamentals and the state-of-the-art of the most sensitive time-gated fluorescence assays. We reflect on how the imaging devices currently employed for readout of these assays might evolve in the future. Many contemporary biological investigations rely on highly sensitive in vitro assays for the analysis of specific molecules in biological specimens, and the main part of these assays depends on high-sensitivity fluorescence detection techniques for the final readout. The analyzed molecules and molecular interactions in the specimen need to be detected in the presence of other highly abundant biomolecules, while the analyzed molecules themselves are only present at nano-, pico-, or even femtomolar concentration.A short scientific rationale of fluorescence is presented. It emphasizes the use of fluorescent labels for sensitive assays in life sciences and specifies the main properties of an ideal

  20. Optical properties and cross-sections of biological aerosols

    Science.gov (United States)

    Thrush, E.; Brown, D. M.; Salciccioli, N.; Gomes, J.; Brown, A.; Siegrist, K.; Thomas, M. E.; Boggs, N. T.; Carter, C. C.

    2010-04-01

    There is an urgent need to develop standoff sensing of biological agents in aerosolized clouds. In support of the Joint Biological Standoff Detection System (JBSDS) program, lidar systems have been a dominant technology and have shown significant capability in field tests conducted in the Joint Ambient Breeze Tunnel (JABT) at Dugway Proving Ground (DPG). The release of biological agents in the open air is forbidden. Therefore, indirect methods must be developed to determine agent cross-sections in order to validate sensor against biological agents. A method has been developed that begins with laboratory measurements of thin films and liquid suspensions of biological material to obtain the complex index of refraction from the ultraviolet (UV) to the long wave infrared (LWIR). Using that result and the aerosols' particle size distribution as inputs to Mie calculations yields the backscatter and extinction cross-sections as a function of wavelength. Recent efforts to model field measurements from the UV to the IR have been successful. Measurements with aerodynamic and geometric particle sizers show evidence of particle clustering. Backscatter simulations of these aerosols show these clustered particles dominate the aerosol backscatter and depolarization signals. In addition, these large particles create spectral signatures in the backscatter signal due to material absorption. Spectral signatures from the UV to the IR have been observed in simulations of field releases. This method has been demonstrated for a variety of biological simulant materials such as Ovalbumin (OV), Erwinia (EH), Bacillus atrophaeus (BG) and male specific bacteriophage (MS2). These spectral signatures may offer new methods for biological discrimination for both stand-off sensing and point detection systems.

  1. Hybrid photoacoustic and optical imaging of pigments in vegetative tissues.

    Science.gov (United States)

    Tserevelakis, George J; Tsagkaraki, Margarita; Zacharakis, Giannis

    2016-09-01

    Pigments in vegetative tissues have been a subject of intense research during the previous decades, since they play an active role in several molecular mechanisms regarding plants' physiology and function. Towards this direction, the imaging modality that has been extensively employed and represents the state of the art for mapping pigments' distribution is confocal microscopy. Despite the advantage of a high spatial resolution however, confocal microscopy provides a rather limited imaging depth and requires necessarily strong fluorescence properties from the specimen under observation. To overcome such limitations, we propose a hybrid, photoacoustic and optical imaging methodology for the delineation of various vegetative pigments, such as chlorophylls, anthocyanins and betalains in different plant species. The superior sensitivity and the high contrast complementarity of the hybrid technique, render it a powerful alternative to the conventional fluorescence imaging modalities, significantly expanding the current state of the art. PMID:27019381

  2. Imaging of mouse embryonic eye development using optical coherence tomography

    Science.gov (United States)

    Syed, Saba H.; Kasiraj, Alyssa; Larina, Irina V.; Dickinson, Mary E.; Larin, Kirill V.

    2010-02-01

    Congenital abnormalities are often caused by genetic disorders which alter the normal development of the eye. Embryonic eye imaging in mouse model is important for understanding of normal and abnormal eye development and can contribute to prevention and treatment of eye defects in humans. In this study, we used Swept Source Optical Coherence Tomography (SS-OCT) to image eye structure in mouse embryos at 12.5 to 17.5 days post coitus (dpc). The imaging depth of the OCT allowed us to visualize the whole eye globe at these stages. Different ocular tissues including lens, cornea, eyelids, and hyaloid vasculature were visualized. These results suggest that OCT imaging is a useful tool to study embryonic eye development in the mouse model.

  3. Label-free nonlinear optical imaging of mouse retina.

    Science.gov (United States)

    He, Sicong; Ye, Cong; Sun, Qiqi; Leung, Christopher K S; Qu, Jianan Y

    2015-03-01

    A nonlinear optical (NLO) microscopy system integrating stimulated Raman scattering (SRS), two-photon excited fluorescence (TPEF) and second-harmonic generation (SHG) was developed to image fresh mouse retinas. The morphological and functional details of various retinal layers were revealed by the endogenous NLO signals. Particularly, high resolution label-free imaging of retinal neurons and nerve fibers in the ganglion cell and nerve fiber layers was achieved by capturing endogenous SRS and TPEF signals. In addition, the spectral and temporal analysis of TPEF images allowed visualization of different fluorescent components in the retinal pigment epithelium (RPE). Fluorophores with short TPEF lifetime, such as A2E, can be differentiated from other long-lifetime components in the RPE. The NLO imaging method would provide important information for investigation of retinal ganglion cell degeneration and holds the potential to study the biochemical processes of visual cycle in the RPE.

  4. Label-free imaging through nonlinear optical signals

    Directory of Open Access Journals (Sweden)

    Ling Tong

    2011-06-01

    Full Text Available Strong intrinsic nonlinear optical (NLO signals not only make nanostructures promising agents for bio-imaging, but also advance NLO microscopy for the study of interactions between nanomaterials and live cells. Single beam modalities such as multiphoton luminescence, second harmonic generation, and third harmonic generation provide a simple way to probe many types of nanostructures. As for more advanced modalities, photothermal heterodyne imaging provides improved detection sensitivity for smaller objects, and transient absorption microscopy provides structural information to distinguish metal from semiconducting carbon nanotubes, and eumelanin from pheomelanin. The four-wave mixing signal achieves chemical selectivity in the presence of either vibrational or electronic resonance, as used in coherent Raman scattering imaging of molecules and in electronically resonance enhanced four-wave mixing imaging of nanostructures.

  5. Adaptive optics imaging of low and intermediate redshift quasars

    CERN Document Server

    Márquez, I; Theodore, B; Bremer, M; Monnet, G; Beuzit, J L

    2001-01-01

    We present the results of adaptive-optics imaging in the H and K bands of 12 low and intermediate redshift (z15.0) themselves as reference for the correction, have typical spatial resolution of FWHM~0.3 arcsec before deconvolution. The deconvolved H-band image of PG1700+514 has a spatial resolution of 0.16 arcsec and reveals a wealth of details on the companion and the host-galaxy. Four out of the twelve quasars have close companions and obvious signs of interactions. The two-dimensional images of three of the host-galaxies unambiguously reveal bars and spiral arms. The morphology of the other objects are difficult to determine from one dimensional surface brightness profile and deeper images are needed. Analysis of mocked data shows that elliptical galaxies are always recognized as such, whereas disk hosts can be missed for small disk scale lengths and large QSO contributions.

  6. An Imaging Roadmap for Biology Education: From Nanoparticles to Whole Organisms

    Science.gov (United States)

    Kelley, Daniel J.; Davidson, Richard J.; Nelson, David L.

    2008-01-01

    Imaging techniques provide ways of knowing structure and function in biology at different scales. The multidisciplinary nature and rapid advancement of imaging sciences requires imaging education to begin early in the biology curriculum. Guided by the National Institutes of Health (NIH) Roadmap initiatives, we incorporated a nanoimaging, molecular…

  7. Space imaging infrared optical guidance for autonomous ground vehicle

    Science.gov (United States)

    Akiyama, Akira; Kobayashi, Nobuaki; Mutoh, Eiichiro; Kumagai, Hideo; Yamada, Hirofumi; Ishii, Hiromitsu

    2008-08-01

    We have developed the Space Imaging Infrared Optical Guidance for Autonomous Ground Vehicle based on the uncooled infrared camera and focusing technique to detect the objects to be evaded and to set the drive path. For this purpose we made servomotor drive system to control the focus function of the infrared camera lens. To determine the best focus position we use the auto focus image processing of Daubechies wavelet transform technique with 4 terms. From the determined best focus position we transformed it to the distance of the object. We made the aluminum frame ground vehicle to mount the auto focus infrared unit. Its size is 900mm long and 800mm wide. This vehicle mounted Ackerman front steering system and the rear motor drive system. To confirm the guidance ability of the Space Imaging Infrared Optical Guidance for Autonomous Ground Vehicle we had the experiments for the detection ability of the infrared auto focus unit to the actual car on the road and the roadside wall. As a result the auto focus image processing based on the Daubechies wavelet transform technique detects the best focus image clearly and give the depth of the object from the infrared camera unit.

  8. Adaptive optics scanning laser ophthalmoscope imaging: technology update

    Directory of Open Access Journals (Sweden)

    Merino D

    2016-04-01

    Full Text Available David Merino, Pablo Loza-Alvarez The Institute of Photonic Sciences (ICFO, The Barcelona Institute of Science and Technology, Castelldefels, Barcelona, Spain Abstract: Adaptive optics (AO retinal imaging has become very popular in the past few years, especially within the ophthalmic research community. Several different retinal techniques, such as fundus imaging cameras or optical coherence tomography systems, have been coupled with AO in order to produce impressive images showing individual cell mosaics over different layers of the in vivo human retina. The combination of AO with scanning laser ophthalmoscopy has been extensively used to generate impressive images of the human retina with unprecedented resolution, showing individual photoreceptor cells, retinal pigment epithelium cells, as well as microscopic capillary vessels, or the nerve fiber layer. Over the past few years, the technique has evolved to develop several different applications not only in the clinic but also in different animal models, thanks to technological developments in the field. These developments have specific applications to different fields of investigation, which are not limited to the study of retinal diseases but also to the understanding of the retinal function and vision science. This review is an attempt to summarize these developments in an understandable and brief manner in order to guide the reader into the possibilities that AO scanning laser ophthalmoscopy offers, as well as its limitations, which should be taken into account when planning on using it. Keywords: high-resolution, in vivo retinal imaging, AOSLO

  9. Lung vasculature imaging using speckle variance optical coherence tomography

    Science.gov (United States)

    Cua, Michelle; Lee, Anthony M. D.; Lane, Pierre M.; McWilliams, Annette; Shaipanich, Tawimas; MacAulay, Calum E.; Yang, Victor X. D.; Lam, Stephen

    2012-02-01

    Architectural changes in and remodeling of the bronchial and pulmonary vasculature are important pathways in diseases such as asthma, chronic obstructive pulmonary disease (COPD), and lung cancer. However, there is a lack of methods that can find and examine small bronchial vasculature in vivo. Structural lung airway imaging using optical coherence tomography (OCT) has previously been shown to be of great utility in examining bronchial lesions during lung cancer screening under the guidance of autofluorescence bronchoscopy. Using a fiber optic endoscopic OCT probe, we acquire OCT images from in vivo human subjects. The side-looking, circumferentially-scanning probe is inserted down the instrument channel of a standard bronchoscope and manually guided to the imaging location. Multiple images are collected with the probe spinning proximally at 100Hz. Due to friction, the distal end of the probe does not spin perfectly synchronous with the proximal end, resulting in non-uniform rotational distortion (NURD) of the images. First, we apply a correction algorithm to remove NURD. We then use a speckle variance algorithm to identify vasculature. The initial data show a vascaulture density in small human airways similar to what would be expected.

  10. Electro-Optical Imaging Fourier-Transform Spectrometer

    Science.gov (United States)

    Chao, Tien-Hsin; Zhou, Hanying

    2006-01-01

    An electro-optical (E-O) imaging Fourier-transform spectrometer (IFTS), now under development, is a prototype of improved imaging spectrometers to be used for hyperspectral imaging, especially in the infrared spectral region. Unlike both imaging and non-imaging traditional Fourier-transform spectrometers, the E-O IFTS does not contain any moving parts. Elimination of the moving parts and the associated actuator mechanisms and supporting structures would increase reliability while enabling reductions in size and mass, relative to traditional Fourier-transform spectrometers that offer equivalent capabilities. Elimination of moving parts would also eliminate the vibrations caused by the motions of those parts. Figure 1 schematically depicts a traditional Fourier-transform spectrometer, wherein a critical time delay is varied by translating one the mirrors of a Michelson interferometer. The time-dependent optical output is a periodic representation of the input spectrum. Data characterizing the input spectrum are generated through fast-Fourier-transform (FFT) post-processing of the output in conjunction with the varying time delay.

  11. Limitations of synthetic aperture laser optical feedback imaging

    CERN Document Server

    Glastre, Wilfried; Hugon, Olivier; De Chatellus, Hugues Guillet; Lacot, Eric

    2012-01-01

    In this paper we present the origin and the effect of amplitude and phase noise on Laser Optical Feedback Imaging (LOFI) associated with Synthetic Aperture (SA) imaging system. Amplitude noise corresponds to photon noise and acts as an additive noise, it can be reduced by increasing the global measurement time. Phase noise can be divided in three families: random, sinusoidal and drift phase noise; we show that it acts as a multiplicative noise. We explain how we can reduce it by making oversampling or multiple measurements depending on its type. This work can easily be extended to all SA systems (Radar, Laser or Terahertz), especially when raw holograms are acquired point by point.

  12. Optical Image Encryption with Simplified Fractional Hartley Transform

    Institute of Scientific and Technical Information of China (English)

    LI Xin-Xin; ZHAO Dao-Mu

    2008-01-01

    We present a new method for image encryption on the basis of simplified fractional Hartley transform (SFRHT). SFRHT is a real transform as Hartley transform (HT) and furthermore, superior to HT in virtue of the advantage that it can also append fractional orders as additional keys for the purpose of improving the system security to some extent. With this method, one can encrypt an image with an intensity-only medium such as a photographic film or a CCD camera by spatially incoherent or coherent illumination. The optical realization is then proposed and computer simulations are also performed to verify the feasibility of this method.

  13. High Speed Optical Tomography System for Imaging Dynamic Transparent Media

    Science.gov (United States)

    McMackin, Lenore; Hugo, Ronald J.; Pierson, R. E.; Truman, C. R.

    1997-11-01

    We describe the design and operation of a high speed optical tomography system for measuring two-dimensional images of a dynamic phase object at a rate of 5 kHz. Data from a set of eight Hartmann wavefront sensors is back-projected to produce phase images showing the details of the inner structure of a heated air flow. The tomographic reconstructions have a spatial resolution of approximately 2.0 mm and can measure temperature variations across the flow with an accuracy of about 0.7 C. Series of animated reconstructions at different downstream locations illustrate the development of flow structure and the effect of acoustic flow forcing.

  14. Optical imaging process based on two-dimensional Fourier transform for synthetic aperture imaging ladar

    Science.gov (United States)

    Sun, Zhiwei; Zhi, Ya'nan; Liu, Liren; Sun, Jianfeng; Zhou, Yu; Hou, Peipei

    2013-09-01

    The synthetic aperture imaging ladar (SAIL) systems typically generate large amounts of data difficult to compress with digital method. This paper presents an optical SAIL processor based on compensation of quadratic phase of echo in azimuth direction and two dimensional Fourier transform. The optical processor mainly consists of one phase-only liquid crystal spatial modulator(LCSLM) to load the phase data of target echo and one cylindrical lens to compensate the quadratic phase and one spherical lens to fulfill the task of two dimensional Fourier transform. We show the imaging processing result of practical target echo obtained by a synthetic aperture imaging ladar demonstrator. The optical processor is compact and lightweight and could provide inherent parallel and the speed-of-light computing capability, it has a promising application future especially in onboard and satellite borne SAIL systems.

  15. Imaging of collagen deposition disorders using optical coherence tomography

    DEFF Research Database (Denmark)

    Ring, H C; Mogensen, M; Hussain, A A;

    2015-01-01

    BACKGROUND: Collagen deposition disorders such as hypertrophic scars, keloids and scleroderma can be associated with significant stigma and embarrassment. These disorders often constitute considerable impairment to quality of life, with treatment posing to be a substantial challenge. Optical...... coherence tomography (OCT) provides a non-invasive, easily applicable bedside optical imaging method for assessment of the skin. It is hypothesized that OCT imaging may be useful in assessing fibrosis to avoid additional biopsies that could potentially worsen the scarring. METHOD: Thirty-three patients...... lesion type. Hypertrophic scars displayed an increased vascularity and signal-rich bands correlating to excessive collagen deposition. Keloids depicted a disarray of hyper-reflective areas primarily located in the upper dermis. Additionally, the dermis displayed a heterogeneous morphology without...

  16. Hyperspectral optical imaging of two different species of lepidoptera

    Directory of Open Access Journals (Sweden)

    Vukusic Pete

    2011-01-01

    Full Text Available Abstract In this article, we report a hyperspectral optical imaging application for measurement of the reflectance spectra of photonic structures that produce structural colors with high spatial resolution. The measurement of the spectral reflectance function is exemplified in the butterfly wings of two different species of Lepidoptera: the blue iridescence reflected by the nymphalid Morpho didius and the green iridescence of the papilionid Papilio palinurus. Color coordinates from reflectance spectra were calculated taking into account human spectral sensitivity. For each butterfly wing, the observed color is described by a characteristic color map in the chromaticity diagram and spreads over a limited volume in the color space. The results suggest that variability in the reflectance spectra is correlated with different random arrangements in the spatial distribution of the scales that cover the wing membranes. Hyperspectral optical imaging opens new ways for the non-invasive study and classification of different forms of irregularity in structural colors.

  17. Multifunctional imaging of endogenous contrast by simultaneous nonlinear and optical coherence microscopy of thick tissues.

    Science.gov (United States)

    Yazdanfar, Siavash; Chen, Yen Yu; So, Peter T C; Laiho, Lily H

    2007-07-01

    A variety of high resolution optical microscopy techniques have been developed in recent years for basic and clinical studies of biological systems. We demonstrate a trimodal microscope combining optical coherence microscopy (OCM) with two forms of nonlinear microscopy, namely two-photon excited fluorescence (2PF) and second harmonic generation (SHG), for imaging turbid media. OCM combines the advantages of confocal detection and coherence gating for structural imaging in highly scattering tissues. Nonlinear microscopy enables the detection of biochemical species, such as elastin, NAD(P)H, and collagen. While 2PF arises from nonlinear excitation of fluorescent species, SHG is a form of nonlinear scattering observed in materials that lack a center of inversion symmetry, such as type I collagen. Characterization of the microscope showed nearly diffraction-limited spatial resolution in all modalities. Images were obtained in fish scales and excised human skin samples. The primary endogenous sources of contrast in the dermis were due to elastin autofluorescence and collagen SHG. Multimodal microscopy allows the simultaneous visualization of structural and functional information of biological systems. PMID:17323366

  18. Optical imaging of neural and hemodynamic brain activity

    Science.gov (United States)

    Schei, Jennifer Lynn

    Optical imaging technologies can be used to record neural and hemodynamic activity. Neural activity elicits physiological changes that alter the optical tissue properties. Specifically, changes in polarized light are concomitant with neural depolarization. We measured polarization changes from an isolated lobster nerve during action potential propagation using both reflected and transmitted light. In transmission mode, polarization changes were largest throughout the center of the nerve, suggesting that most of the optical signal arose from the inner nerve bundle. In reflection mode, polarization changes were largest near the edges, suggesting that most of the optical signal arose from the outer sheath. To overcome irregular cell orientation found in the brain, we measured polarization changes from a nerve tied in a knot. Our results show that neural activation produces polarization changes that can be imaged even without regular cell orientations. Neural activation expends energy resources and elicits metabolic delivery through blood vessel dilation, increasing blood flow and volume. We used spectroscopic imaging techniques combined with electrophysiological measurements to record evoked neural and hemodynamic responses from the auditory cortex of the rat. By using implantable optics, we measured responses across natural wake and sleep states, as well as responses following different amounts of sleep deprivation. During quiet sleep, evoked metabolic responses were larger compared to wake, perhaps because blood vessels were more compliant. When animals were sleep deprived, evoked hemodynamic responses were smaller following longer periods of deprivation. These results suggest that prolonged neural activity through sleep deprivation may diminish vascular compliance as indicated by the blunted vascular response. Subsequent sleep may allow vessels to relax, restoring their ability to deliver blood. These results also suggest that severe sleep deprivation or chronic

  19. Optical robotics in a biological micro-environment

    DEFF Research Database (Denmark)

    Glückstad, Jesper

    with the use of joysticks or gaming devices. The fabrication of microstructures with nanometer sized features, for example a nano-needle, coupled with the real-time user interactive optical control allows a user to robotically actuate appended nanostructures depending on their intended function. These micro...

  20. Fourier transform acousto-optic imaging with a custom-designed CMOS smart-pixels array.

    Science.gov (United States)

    Barjean, Kinia; Contreras, Kevin; Laudereau, Jean-Baptiste; Tinet, Éric; Ettori, Dominique; Ramaz, François; Tualle, Jean-Michel

    2015-03-01

    We report acousto-optic imaging (AOI) into a scattering medium using a Fourier Transform (FT) analysis to achieve axial resolution. The measurement system was implemented using a CMOS smart-pixels sensor dedicated to the real-time analysis of speckle patterns. This first proof-of-principle of FT-AOI demonstrates some of its potential advantages, with a signal-to-noise ratio comparable to the one obtained without axial resolution, and with an acquisition rate compatible with a use on living biological tissue.

  1. Magneto-optical imaging of voltage-controlled magnetization reorientation

    OpenAIRE

    Brandlmaier, A.; Brasse, M.; Geprägs, S.; Weiler, M.; Gross, R.; Goennenwein, S. T. B.

    2011-01-01

    We study the validity and limitations of a macrospin model to describe the voltage-controlled manipulation of ferromagnetic magnetization in nickel thin film/piezoelectric actuator hybrid structures. To this end, we correlate simultaneously measured spatially resolved magneto-optical Kerr effect imaging and integral magnetotransport measurements at room temperature. Our results show that a macrospin approach is adequate to model the magnetoresistance as a function of the voltage applied to th...

  2. Image formation and tomogram reconstruction in optical coherence microscopy

    OpenAIRE

    Villiger, Martin; Lasser, Theo

    2010-01-01

    In this work we present a model for image formation in optical coherence microscopy. In the spectral domain detection, each wavenumber has a specific coherent transfer function that samples a different part of the object's spatial frequency spectrum. The reconstruction of the tomogram is usually accurate only in a short depth of field. Using numerical simulations based on the developed model, we identified two distinct mechanisms that influence the signal of out-of-focus sample information. B...

  3. RETROCAM: A Versatile Optical Imager for Synoptic Studies

    CERN Document Server

    Morgan, C W; De Poy, D L; Derwent, M; Kochanek, C S; Marshall, J L; O'Brien, T P; Pogge, R W; Morgan, Christopher W.; Byard, Paul L.; Derwent, Mark; Kochanek, Christopher S.; Brien, Thomas P. O'; Pogge, Richard W.

    2005-01-01

    We present RETROCAM, an auxiliary CCD camera that can be rapidly inserted into the optical beam of the MDM 2.4m telescope. The speed and ease of reconfiguring the telescope to use the imager and a straightforward user interface permit the camera to be used during the course of other observing programs. This in turn encourages RETROCAM's use for a variety of monitoring projects.

  4. A Stochastic Approach for Blurred Image Restoration and Optical Flow Computation on Field Image Sequence

    Institute of Scientific and Technical Information of China (English)

    高文; 陈熙霖

    1997-01-01

    The blur in target images caused by camera vibration due to robot motion or hand shaking and by object(s) moving in the background scene is different to deal with in the computer vision system.In this paper,the authors study the relation model between motion and blur in the case of object motion existing in video image sequence,and work on a practical computation algorithm for both motion analysis and blut image restoration.Combining the general optical flow and stochastic process,the paper presents and approach by which the motion velocity can be calculated from blurred images.On the other hand,the blurred image can also be restored using the obtained motion information.For solving a problem with small motion limitation on the general optical flow computation,a multiresolution optical flow algoritm based on MAP estimation is proposed. For restoring the blurred image ,an iteration algorithm and the obtained motion velocity are used.The experiment shows that the proposed approach for both motion velocity computation and blurred image restoration works well.

  5. Image density property of optical information recording microcapsule material

    Science.gov (United States)

    Lai, Weidong; Li, Xiaowei; Li, Xinzheng; Fu, Guangsheng

    2009-05-01

    The microcapsules can act as novel optical functional material in which the optical recording substance such as color-forming substance, photoinitiator and prepolymer are encapsulated. In this paper, the microcapsules with average particle diameter of 300nm are prepared with interfacial polymerization method. The optical responding character of the microcapsule is analyzed based on IR spectra and image density technique. Results show that the microcapsule material encapsulated prepolymer TMPTA and photoinitiator Irgacure-ITX, TPO has thermal phase-change at 140°C, at which the penetrability of the microcapsule has the highest efficiency. With the increase of exposure time, the reduction in absorption intensities of the prepolymer TMPTA are observed at 1635cm-1 of C=C stretching and 898cm-1 of C-H stretching on the C=C molecular bond. Such a result can be ascribed to the double bond cleavage process of the prepolymer TMPTA is initiated by the optical-exposed photoinitiator, and superpolymer network is formed. The image density contrast between the unexposed and exposed microcapsule is enhanced with exposure time increased.

  6. Development of a nonlinear optical measurement-4 coherent imaging system

    Science.gov (United States)

    Chen, Xiaojun; Song, Yinglin; Gu, Jihua; Yang, Junyi; Shui, Min; Hou, Dengke; Zhu, Zongjie

    2009-07-01

    After the nonlinear optical phenomena were discovered, people began to research the techniques to detect the optical nonlinearities of materials. In this paper, a new optical nonlinear measurement technique-4f coherent imaging system is recommended. The system has many advantages: single shot real-time measurement, simple experimental apparatus, high sensitivity, being able to detect the magnitude and sign of both nonlinear absorption and refraction at the same time, low requirement of beam spatial distribution, and so on. This paper introduces the theory of the 4f system and makes a detailed review and expounds development and application of the 4f coherent image system. The nerve of the experiment is improving the phase diaphragm. The shape of the diaphragm from the double-slits to the small rectangular object, and transition to a circular aperture, finally forming a circular phase diaphragm, which is a circular aperture in the center add a phase object. Following these diaphragm changes, the sensitivity of the system is greatly improved. The latest developments of the system are series-wound double 4f coherent imaging technique and the time-resolved pump-probe system based on NIT-PO. The time-resolved pump-probe system based on NIT-PO can be used to measure the dynamic characteristics of excited states nonlinear absorption and refraction.

  7. Polycapillary optics for soft X-ray imaging and tomography

    International Nuclear Information System (INIS)

    Magnetic plasmas are extended volumetric sources of X-rays, and these emissions could reveal a lot of information about the processes occurring into the plasmas. Unfortunately, the constraints posed by these toroidal devices (high neutron flux, gamma and hard-X background, extremely high radiofrequency powers, high magnetic fields, optical limitations and so on) are very severe and limit strongly the possibility to install X-ray detectors directly into or close to the machine. Soft X-ray diagnostics are meant both as tomography and imaging. We started, therefore, to investigate the feasibility of using polycapillary optics for these purposes, in collaboration between 'Istituto Nazionale di Fisica Nucleare' (INFN)- Frascati, and 'Ente per le Nuove tecnologie, l'Energia e l'Ambiente' (ENEA)-Frascati and the 'Commissariat de l'Energie Atomique' (CEA)-Cadarache. The first tests were performed in order to characterize the polycapillary lenses (convergence, divergence, efficiency, spectral dispersion, etc.) for distances much larger than the optical focal length of the lenses, both for the detector and for the source. A silicon-based C-MOS imager (Medipix 2) has been used as a detector and the micro focus X-ray tubes as point-like sources. Results of these preliminary tests are presented, and the imaging capabilities of a polycapillary lens as well.

  8. In vivo intrinsic optical signal imaging of mouse retinas

    Science.gov (United States)

    Wang, Benquan; Yao, Xincheng

    2016-03-01

    Intrinsic optical signal (IOS) imaging is a promising noninvasive method for advanced study and diagnosis of eye diseases. Before pursuing clinical applications, more IOS studies employing animal models are necessary to establish the relationship between IOS distortions and eye diseases. Ample mouse models are available for investigating the relationship between IOS distortions and eye diseases. However, in vivo IOS imaging of mouse retinas is challenging due to the small ocular lens (compared to frog eyes) and inevitable eye movements. We report here in vivo IOS imaging of mouse retinas using a custom-designed functional OCT. The OCT system provided high resolution (3 μm) and high speed (up to 500 frames/s) imaging of mouse retinas. An animal holder equipped with a custom designed ear bar and bite bar was used to minimize eye movement due to breathing and heartbeats. Residual eye movement in OCT images was further compensated by accurate image registration. Dynamic OCT imaging revealed rapid IOSs from photoreceptor outer segments immediately (IOS changes were also observed from inner retinal layers with delayed time courses compared to that of photoreceptor IOSs.

  9. End-to-End Image Simulator for Optical Imaging Systems: Equations and Simulation Examples

    Directory of Open Access Journals (Sweden)

    Peter Coppo

    2013-01-01

    Full Text Available The theoretical description of a simplified end-to-end software tool for simulation of data produced by optical instruments, starting from either synthetic or airborne hyperspectral data, is described and some simulation examples of hyperspectral and panchromatic images for existing and future design instruments are also reported. High spatial/spectral resolution images with low intrinsic noise and the sensor/mission specifications are used as inputs for the simulations. The examples reported in this paper show the capabilities of the tool for simulating target detection scenarios, data quality assessment with respect to classification performance and class discrimination, impact of optical design on image quality, and 3D modelling of optical performances. The simulator is conceived as a tool (during phase 0/A for the specification and early development of new Earth observation optical instruments, whose compliance to user’s requirements is achieved through a process of cost/performance trade-off. The Selex Galileo simulator, as compared with other existing image simulators for phase C/D projects of space-borne instruments, implements all modules necessary for a complete panchromatic and hyper spectral image simulation, and it allows excellent flexibility and expandability for new integrated functions because of the adopted IDL-ENVI software environment.

  10. Optical properties of dissolved organic matter (DOM): Effects of biological and photolytic degradation

    Science.gov (United States)

    Hansen, Angela; Kraus, Tamara; Pellerin, Brian; Fleck, Jacob; Downing, Bryan D.; Bergamaschi, Brian

    2016-01-01

    Advances in spectroscopic techniques have led to an increase in the use of optical properties (absorbance and fluorescence) to assess dissolved organic matter (DOM) composition and infer sources and processing. However, little information is available to assess the impact of biological and photolytic processing on the optical properties of original DOM source materials. We measured changes in commonly used optical properties and indices in DOM leached from peat soil, plants, and algae following biological and photochemical degradation to determine whether they provide unique signatures that can be linked to original DOM source. Changes in individual optical parameters varied by source material and process, with biodegradation and photodegradation often causing values to shift in opposite directions. Although values for different source materials overlapped at the end of the 111-day lab experiment, multivariate statistical analyses showed that unique optical signatures could be linked to original DOM source material even after degradation, with 17 optical properties determined by discriminant analysis to be significant (p<0.05) in distinguishing between DOM source and environmental processing. These results demonstrate that inferring the source material from optical properties is possible when parameters are evaluated in combination even after extensive biological and photochemical alteration.

  11. Development of dual imaging optical sensor (DIOS) for small satellites

    Science.gov (United States)

    Choi, Young-Wan; Kang, Myung-Seok; Jeong, Sung-Keun; Yun, Ji-Ho; Yang, Seung-Uk; Kim, Jongun; Kim, Ee-Eul

    2007-09-01

    The mission of DIOS program is to provide the function of large-swathwidth or in-track stereo imaging with compact electro-optical cameras. Optimized from its predecessor SAC (Small-sized Aperture Camera), DIOS consists of two cameras, each with an aperture of 120 mm diameter, 10 m GSD, and 50 km swath width in the spectral range of 520 ~ 890 nm. DIOS is developed to produce high quality images: MTF of more than 12 %; SNR of more than 100. DIOS can be configured to have cameras side-by-side, providing a swathwidth up to 100 km for a mission of large swathwidth. DIOS will be configured with installation of slanted two cameras for the mission of in-track stereo imaging to produce digital elevation model. In this paper, Dual Imaging Optical Sensor (DIOS) will be introduced with design approach and performance measure. Even though developed for micro satellites, the presentation of development status and test results will demonstrate the potential capability that DISO can provide for world-wide remote sensing groups: short development period, cost-effectiveness, wide application ranges, and high performance.

  12. Deep optical images of Malin 1 reveal new features

    CERN Document Server

    Galaz, Gaspar; Suc, Vincent; Busta, Luis; Lizana, Guadalupe; Infante, Leopoldo; Royo, Santiago

    2015-01-01

    We present Megacam deep optical images (g and r) of Malin 1 obtained with the 6.5m Magellan/Clay telescope, detecting structures down to ~ 28 B mag arcsec-2. In order to enhance galaxy features buried in the noise, we use a noise reduction filter based on the total generalized variation regularizator. This method allows us to detect and resolve very faint morphological features, including spiral arms, with a high visual contrast. For the first time, we can appreciate an optical image of Malin 1 and its morphology in full view. The images provide unprecedented detail, compared to those obtained in the past with photographic plates and CCD, including HST imaging. We detect two peculiar features in the disk/spiral arms. The analysis suggests that the first one is possibly a background galaxy, and the second is an apparent stream without a clear nature, but could be related to the claimed past interaction between Malin 1 and the galaxy SDSSJ123708.91 + 142253.2. Malin 1 exhibits features suggesting the presence o...

  13. Determination of graphene layer thickness using optical image processing

    Science.gov (United States)

    Cook, Monica; Mani, R. G.

    2015-03-01

    Graphene, a single atomic layer of carbon arranged in a hexagonal lattice structure, is a valuable material in a wide range of research. A significant impediment to graphene research is the need to manually characterize the thickness of high-quality graphene produced via mechanical exfoliation. Traditional methods of characterizing the layer thickness of graphene, including Raman spectroscopy and atomic force microscopy, require expensive equipment and can be damaging to the graphene sample. We examine here a known alternative method for quantitatively determining the layer thickness of graphene on SiO2/Si based on optical image processing, which is quick, inexpensive, and non-invasive. Using RGB images of a candidate graphene sample and a background image, taken with a simple optical microscope and charge-coupled device (CCD) camera, we process the images with an algorithm based on Fresnel's law to obtain the contrast spectrum. Each layer of graphene exhibits a unique contrast spectrum for its particular substrate, which is measured and used for accurate layer identification. We also discuss how this algorithm can be generalized to characterize the thickness of other promising two-dimensional materials as well as more complex structures on a variety of substrates.

  14. Adaptive optics scanning laser ophthalmoscope imaging: technology update.

    Science.gov (United States)

    Merino, David; Loza-Alvarez, Pablo

    2016-01-01

    Adaptive optics (AO) retinal imaging has become very popular in the past few years, especially within the ophthalmic research community. Several different retinal techniques, such as fundus imaging cameras or optical coherence tomography systems, have been coupled with AO in order to produce impressive images showing individual cell mosaics over different layers of the in vivo human retina. The combination of AO with scanning laser ophthalmoscopy has been extensively used to generate impressive images of the human retina with unprecedented resolution, showing individual photoreceptor cells, retinal pigment epithelium cells, as well as microscopic capillary vessels, or the nerve fiber layer. Over the past few years, the technique has evolved to develop several different applications not only in the clinic but also in different animal models, thanks to technological developments in the field. These developments have specific applications to different fields of investigation, which are not limited to the study of retinal diseases but also to the understanding of the retinal function and vision science. This review is an attempt to summarize these developments in an understandable and brief manner in order to guide the reader into the possibilities that AO scanning laser ophthalmoscopy offers, as well as its limitations, which should be taken into account when planning on using it.

  15. Integrated optics in an electrically scanned imaging Fourier transform spectrometer

    Science.gov (United States)

    Breckinridge, James B. (Inventor); Ocallaghan, Fred G. (Inventor)

    1982-01-01

    An efficient, lightweight and stable, Fourier transform spectrometer was developed. The mechanical slide mechanism needed to create a path difference was eliminated by the use of retro-reflecting mirrors in a monolithic interferometer assembly in which the mirrors are not at 90 degrees to the propagation vector of the radiation, but rather at a small angle. The resulting plane wave fronts create a double-sided inteferogram of the source irradiance distribution which is detected by a charge-coupled device image sensor array. The position of each CCD pixel in the array is an indication of the path difference between the two retro-reflecting mirrors in the monolithic optical structure. The Fourier transform of the signals generated by the image sensor provide the spectral irradiance distribution of the source. For imaging, the interferometer assembly scans the source of irradiation by moving the entire instrument, such as would occur if it was fixedly mounted to a moving platform, i.e., a spacecraft. During scanning, the entrace slot to the monolithic optical structure sends different pixels to corresponding interferograms detected by adjacent columns of pixels of the image sensor.

  16. Joint Applied Optics and Chinese Optics Letters Feature Introduction: Digital Holography and 3D Imaging

    Institute of Scientific and Technical Information of China (English)

    Ting-Chung Poon; Changhe Zhou; Toyohiko Yatagai; Byoungho Lee; Hongchen Zhai

    2011-01-01

    This feature issue is the fifth installment on digital holography since its inception four years ago.The last four issues have been published after the conclusion of each Topical Meeting "Digital Holography and 3D imaging (DH)." However,this feature issue includes a new key feature-Joint Applied Optics and Chinese Optics Letters Feature Issue.The DH Topical Meeting is the world's premier forum for disseminating the science and technology geared towards digital holography and 3D information processing.Since the meeting's inception in 2007,it has steadily and healthily grown to 130 presentations this year,held in Tokyo,Japan,May 2011.

  17. Plasmophore sensitized imaging of ammonia release from biological tissues using optodes.

    Science.gov (United States)

    Strömberg, Niklas; Hakonen, Aron

    2011-10-17

    A plasmophore sensitized optode was developed for imaging ammonia (NH(3)) concentrations in muscle tissues. The developed ammonia sensor and an equivalent non plasmophore version of the sensor were tested side by side to compare their limit of detection, dynamic range, reversibility and overall imaging quality. Bio-degradation patterns of ammonia release from lean porcine skeletal muscle were studied over a period of 11 days. We demonstrate that ammonia concentrations ranging from 10nM can be quantified reversibly with an optical resolution of 127 μm in a sample area of 25 mm × 35 mm. The plasmophore ammonia optode showed improved reversibility, less false pixels and a 2 nM ammonia detection limit compared to 200 nM for the non-plasmophore sensor. Main principles of the sensing mechanism include ammonia transfer over a gas permeable film, ammonia protonation, nonactin facilitated merocyanine-ammonium coextraction and plasmophore enhancement. The vast signal improvement is suggested to rely on solvatochroism, nanoparticle scattering and plasmonic interactions that are utilized constructively in a fluorescence ratio. In addition to fundamental medicinal and biological research applications in tissue physiology, reversible ammonia quantification will be possible for a majority of demanding imaging and non imaging applications such as monitoring of low ammonia background concentrations in air and non-invasive medicinal diagnosis through medical breath or saliva analysis. The nanoparticle doped sensor constitutes a highly competitive technique for ammonia sensing in complex matrixes and the general sensing scheme offers new possibilities for the development of artificial optical noses and tongues.

  18. High-resolution Imaging of Living Retina through Optic Adaptive Retinal Imaging System

    Institute of Scientific and Technical Information of China (English)

    Chunhui Jiang; Wenji Wang; Ning Ling; Gezhi Xu; Xuejun Rao; Xinyang Li; Yudong Zhang

    2002-01-01

    Purpose: To evaluate the possibility as well as the usage of adaptive optics in high-resolution retinal imaging.Methods:From March to November 2001, the fundus of 25 adults were checked by using Optic Adaptive Retinal Imaging System (OAS). The age of the subjects varied from 18~48 years. All had normal visual acuity from 0.9 to 1.0. No abnormality was found in the ocular examination, and their medical as well as ocular history was unremarkable. Results: High-resolution images of the retinal cells, photoreceptor and bipolar cell, were analysed. In these images, the cells are clearly resolved. The density of the photoreceptor at area 1.5 degree from the foveloa is around 40 000~50 000/mm2. At area 3 degree, it drops to less than 30 000/mm2.Conclusion:Optic Adaptive Retinal Imaging System (AOS) is able to get high-resolution image of retinal cells in living human eyes. It may be widely used in ophthalmology experimentally and clinically.

  19. Optimization of pediatric chest radiographic images using optical densities ratio

    Energy Technology Data Exchange (ETDEWEB)

    Souza, Rafael T.F.; Miranda, Jose R.A. [Universidade Estadual Paulista Julio de Mesquita Filho (UNESP), Botucatu, SP (Brazil). Inst. de Biociencias de Botucatu; Pina, Diana R. [Faculdade de Medicina de Botucatu (UNESP), Botucatu, SP (Brazil). Hospital das Clinicas. Dept. de Doencas Tropicais e Diagnostico por Imagem; Duarte, Sergio B. [Centro Brasileiro de Pesquisas Fisicas (CBPF/MCT), Rio de Janeiro, RJ (Brazil)

    2011-07-01

    The aim of this study is the optimization of radiographic images for the pediatric patients in the age range between 0 and 1 years old, through Optical Density Ratio (ODR), considering that pediatric patients are overexposed to radiation in the repeated attempts to obtain radiographic images considered of good quality. The optimization of radiographic techniques was carried out with the RAP-PEPP (Realistic Analytical Phantom coupled to homogeneous Phantom Equivalent to Pediatric Patient) phantom in two incubators and one cradle. The data show that the clinical routine radiographic techniques generate low-quality images at up to 18.8% when evaluated by the ODRs, and increases in doses up to 60% when compared to the optimized techniques doses. (author)

  20. Practical optical interferometry imaging at visible and infrared wavelengths

    CERN Document Server

    Buscher, David F

    2015-01-01

    Optical interferometry is a powerful technique to make images on angular scales hundreds of times smaller than is possible with the largest telescopes. This concise guide provides an introduction to the technique for graduate students and researchers who want to make interferometric observations and acts as a reference for technologists building new instruments. Starting from the principles of interference, the author covers the core concepts of interferometry, showing how the effects of the Earth's atmosphere can be overcome using closure phase, and the complete process of making an observation, from planning to image reconstruction. This rigorous approach emphasizes the use of rules-of-thumb for important parameters such as the signal-to-noise ratios, requirements for sampling the Fourier plane and predicting image quality. The handbook is supported by web resources, including the Python source code used to make many of the graphs, as well as an interferometry simulation framework, available at www.cambridg...

  1. Optical coherence tomography for imaging of skin and skin diseases

    DEFF Research Database (Denmark)

    Mogensen, Mette; Thrane, Lars; Jørgensen, Thomas Martini;

    2009-01-01

    , as have many diseases. The method can provide accurate measures of epidermal and nail changes in normal tissue. Skin cancer and other tumors, as well as inflammatory diseases, have been studied and good agreement found between OCT images and histopathological architecture. OCT also allows noninvasive......Optical coherence tomography (OCT) is an emerging imaging technology based on light reflection. It provides real-time images with up to 2-mm penetration into the skin and a resolution of approximately 10 μm. It is routinely used in ophthalmology. The normal skin and its appendages have been studied...... monitoring of morphologic changes in skin diseases and may have a particular role in the monitoring of medical treatment of nonmelanoma skin cancer. The technology is however still evolving and continued technological development will necessitate an ongoing evaluation of its diagnostic accuracy. Several...

  2. CCD image data acquisition system for optical astronomy.

    Science.gov (United States)

    Bhat, P. N.; Patnaik, K.; Kembhavi, A. K.; Patnaik, A. R.; Prabhu, T. P.

    1990-11-01

    A complete image processing system based on a charge coupled device (CCD) has been developed at TIFR, Bombay, for use in optical astronomy. The system consists of a P-8600/B GEC CCD chip, a CCD controller, a VAX 11/725 mini-computer to carry out the image acquisition and display on a VS-11 monitor. All the necessary software and part of the hardware were developed locally, integrated together and installed at the Vainu Bappu Observatory at Kavalur. CCD as an imaging device and its advantages over the conventional photographic plate is briefly reviewed. The acquisition system is described in detail. The preliminary results are presented and the future research programme is outlined.

  3. Imaging port wine stains by fiber optical coherence tomography

    Science.gov (United States)

    Zhao, Shiyong; Gu, Ying; Xue, Ping; Guo, Jin; Shen, Tingmei; Wang, Tianshi; Huang, Naiyan; Zhang, Li; Qiu, Haixia; Yu, Xin; Wei, Xunbin

    2010-05-01

    We develop a fiber optical coherence tomography (OCT) system in the clinical utility of imaging port wine stains (PWS). We use our OCT system on 41 patients with PWS to document the difference between PWS skin and contralateral normal skin. The system, which operates at 4 frames/s with axial and transverse resolutions of 10 and 9 μm, respectively, in the skin tissue, can clearly distinguish the dilated dermal blood vessels from normal tissue. We present OCT images of patients with PWS and normal human skin. We obtain the structural parameters, including epidermal thickness and diameter and depth of dilated blood vessels. We demonstrate that OCT may be a useful tool for the noninvasive imaging of PWS. It may help determine the photosensitizer dose and laser parameters in photodynamic therapy for treating port wine stains.

  4. Application of optical correlation techniques to particle imaging velocimetry

    Science.gov (United States)

    Wernet, Mark P.; Edwards, Robert V.

    1988-01-01

    Pulsed laser sheet velocimetry yields nonintrusive measurements of velocity vectors across an extended 2-dimensional region of the flow field. The application of optical correlation techniques to the analysis of multiple exposure laser light sheet photographs can reduce and/or simplify the data reduction time and hardware. Here, Matched Spatial Filters (MSF) are used in a pattern recognition system. Usually MSFs are used to identify the assembly line parts. In this application, the MSFs are used to identify the iso-velocity vector contours in the flow. The patterns to be recognized are the recorded particle images in a pulsed laser light sheet photograph. Measurement of the direction of the partical image displacements between exposures yields the velocity vector. The particle image exposure sequence is designed such that the velocity vector direction is determined unambiguously. A global analysis technique is used in comparison to the more common particle tracking algorithms and Young's fringe analysis technique.

  5. Application of optical correlation techniques to particle imaging

    Science.gov (United States)

    Wernet, Mark P.; Edwards, Robert V.

    1988-01-01

    Pulsed laser sheet velocimetry yields noninstrusive measurements of velocity vectors across an extended 2-dimensional region of the flow field. The application of optical correlation techniques to the analysis of multiple exposure laser light sheet photographs can reduce and/or simplify the data reduction time and hardware. Here, Matched Spatial Filters (MSF) are used in a pattern recognition system. Usuallay MSFs are used to identify the assembly line parts. In this application, the MSFs are used to identify the iso-velocity vector contours in the flow. The patterns to be recognized are the recorded particle images in a pulsed laser light sheet photograph. Measurement of the direction of the particle image displacements between exposures yields the velocity vector. The particle image exposure sequence is designed such that the velocity vector direction is determined unambiguously. A global analysis technique is used in comparison to the more common particle tracking algorithms and Young's fringe analysis technique.

  6. Progress of MEMS Scanning Micromirrors for Optical Bio-Imaging

    Directory of Open Access Journals (Sweden)

    Lih Y. Lin

    2015-11-01

    Full Text Available Microelectromechanical systems (MEMS have an unmatched ability to incorporate numerous functionalities into ultra-compact devices, and due to their versatility and miniaturization, MEMS have become an important cornerstone in biomedical and endoscopic imaging research. To incorporate MEMS into such applications, it is critical to understand underlying architectures involving choices in actuation mechanism, including the more common electrothermal, electrostatic, electromagnetic, and piezoelectric approaches, reviewed in this paper. Each has benefits and tradeoffs and is better suited for particular applications or imaging schemes due to achievable scan ranges, power requirements, speed, and size. Many of these characteristics are fabrication-process dependent, and this paper discusses various fabrication flows developed to integrate additional optical functionality beyond simple lateral scanning, enabling dynamic control of the focus or mirror surface. Out of this provided MEMS flexibility arises some challenges when obtaining high resolution images: due to scanning non-linearities, calibration of MEMS scanners may become critical, and inherent image artifacts or distortions during scanning can degrade image quality. Several reviewed methods and algorithms have been proposed to address these complications from MEMS scanning. Given their impact and promise, great effort and progress have been made toward integrating MEMS and biomedical imaging.

  7. Neural imaging in songbirds using fiber optic fluorescence microscopy

    Science.gov (United States)

    Nooshabadi, Fatemeh; Hearn, Gentry; Lints, Thierry; Maitland, Kristen C.

    2012-02-01

    The song control system of juvenile songbirds is an important model for studying the developmental acquisition and generation of complex learned vocal motor sequences, two processes that are fundamental to human speech and language. To understand the neural mechanisms underlying song production, it is critical to characterize the activity of identified neurons in the song control system when the bird is singing. Neural imaging in unrestrained singing birds, although technically challenging, will advance our understanding of neural ensemble coding mechanisms in this system. We are exploring the use of a fiber optic microscope for functional imaging in the brain of behaving and singing birds in order to better understand the contribution of a key brain nucleus (high vocal center nucleus; HVC) to temporal aspects of song motor control. We have constructed a fluorescence microscope with LED illumination, a fiber bundle for transmission of fluorescence excitation and emission light, a ~2x GRIN lens, and a CCD for image acquisition. The system has 2 μm resolution, 375 μm field of view, 200 μm working distance, and 1 mm outer diameter. As an initial characterization of this setup, neurons in HVC were imaged using the fiber optic microscope after injection of quantum dots or fluorescent retrograde tracers into different song nuclei. A Lucid Vivascope confocal microscope was used to confirm the imaging results. Long-term imaging of the activity of these neurons in juvenile birds during singing may lead us to a better understanding of the central motor codes for song and the central mechanism by which auditory experience modifies song motor commands to enable vocal learning and imitation.

  8. Functional connectivity of the rodent brain using optical imaging

    Science.gov (United States)

    Guevara Codina, Edgar

    The aim of this thesis is to apply functional connectivity in a variety of animal models, using several optical imaging modalities. Even at rest, the brain shows high metabolic activity: the correlation in slow spontaneous fluctuations identifies remotely connected areas of the brain; hence the term "functional connectivity". Ongoing changes in spontaneous activity may provide insight into the neural processing that takes most of the brain metabolic activity, and so may provide a vast source of disease related changes. Brain hemodynamics may be modified during disease and affect resting-state activity. The thesis aims to better understand these changes in functional connectivity due to disease, using functional optical imaging. The optical imaging techniques explored in the first two contributions of this thesis are Optical Imaging of Intrinsic Signals and Laser Speckle Contrast Imaging, together they can estimate the metabolic rate of oxygen consumption, that closely parallels neural activity. They both have adequate spatial and temporal resolution and are well adapted to image the convexity of the mouse cortex. In the last article, a depth-sensitive modality called photoacoustic tomography was used in the newborn rat. Optical coherence tomography and laminar optical tomography were also part of the array of imaging techniques developed and applied in other collaborations. The first article of this work shows the changes in functional connectivity in an acute murine model of epileptiform activity. Homologous correlations are both increased and decreased with a small dependence on seizure duration. These changes suggest a potential decoupling between the hemodynamic parameters in resting-state networks, underlining the importance to investigate epileptic networks with several independent hemodynamic measures. The second study examines a novel murine model of arterial stiffness: the unilateral calcification of the right carotid. Seed-based connectivity analysis

  9. Multi-aperture optics as a universal platform for computational imaging

    Science.gov (United States)

    Tanida, Jun

    2016-08-01

    Computational imaging is a novel imaging framework based on optical encoding and computational decoding. To avoid a heuristic design that depends on the particular problem to be solved, multi-aperture optics is useful as a universal platform for optical encoding. In this paper, the fundamental properties of multi-aperture optics are summarized. Then some examples of interesting functions implemented by multi-aperture optics are explained, together with some effective applications.

  10. Applications of Non-Imaging Micro-Optic Systems

    Science.gov (United States)

    Baker, Katherine Anne

    While imaging optics necessarily transmit a clear image of an object, non-imaging optics manipulate light in many different ways. Two important applications are illumination and concentration. In this thesis, I cover an application in each of these areas involving small-scale optics. Extremely low birth weight infants typically require intubation, but existing laryngoscopes for viewing the airway are not suited to this population. Small commercial cameras can fit within the required geometry, but need high illumination with low heating. Repurposing the mechanical structure of the laryngoscope as a waveguide for an LED source meets both these requirements. Concentrator photovoltaic systems accept sunlight over a large aperture and focus it to a proportionally small photovoltaic cell. This kind of configuration allows the cost of expensive but highly efficient multijunction cells to be amortized over a large area module, resulting in cost-effective, high efficiency systems. A prior design from our lab uses a lenslet array and mirrored micro-prisms to concentrate sunlight within a glass waveguide. This enables high efficiency concentration with a compact form factor compatible with mass fabrication and eliminating problems associated with discrete PV cells. I first adapt the basic planar concentrator design for specific applications. One-dimensional polar tracking is an attractive design space, and either passive optical tracking or mechanical micro-tracking can be used to adapt the concentrator for this framework. The concentrator can also be used in solar thermal rather than photovoltaic applications with the addition of an output coupler. I also address a completely different approach to concentrator tracking. This non-imaging system is nonlinear, implementing a reactive cladding layer to enable the system to self-track the sun. I present design studies to quantify the requirements of such a material, then present a candidate materials system to meet these

  11. Application of optical coherence tomography attenuation imaging for quantification of optical properties in medulloblastoma

    Science.gov (United States)

    Vuong, Barry; Skowron, Patryk; Kiehl, Tim-Rasmus; Kyan, Matthew; Garzia, Livia; Genis, Helen; Sun, Cuiru; Taylor, Michael D.; Yang, Victor X. D.

    2015-03-01

    The hemodynamic environment is known to play a crucial role in the progression, rupture, and treatment of intracranial aneurysms. Currently there is difficulty assessing and measuring blood flow profiles in vivo. An emerging high resolution imaging modality known as split spectrum Doppler optical coherence tomography (ssDOCT) has demonstrated the capability to quantify hemodynamic patterns as well as arterial microstructural changes. In this study, we present a novel in vitro method to acquire precise blood flow patterns within a patient- specific aneurysm silicone flow models using ssDOCT imaging. Computational fluid dynamics (CFD) models were generated to verify ssDOCT results.

  12. Scanning near-field optical microscopy on rough surfaces: applications in chemistry, biology, and medicine

    Directory of Open Access Journals (Sweden)

    2006-01-01

    Full Text Available Shear-force apertureless scanning near-field optical microscopy (SNOM with very sharp uncoated tapered waveguides relies on the unexpected enhancement of reflection in the shear-force gap. It is the technique for obtaining chemical (materials contrast in the optical image of “real world” surfaces that are rough and very rough without topographical artifacts, and it is by far less complicated than other SNOM techniques that can only be used for very flat surfaces. The experimental use of the new photophysical effect is described. The applications of the new technique are manifold. Important mechanistic questions in solid-state chemistry (oxidation, diazotization, photodimerization, surface hydration, hydrolysis are answered with respect to simultaneous AFM (atomic force microscopy and detailed crystal packing. Prehistoric petrified bacteria and concomitant pyrite inclusions are also investigated with local RAMAN SNOM. Polymer beads and unstained biological objects (rabbit heart, shrimp eye allow for nanoscopic analysis of cell organelles. Similarly, human teeth and a cancerous tissue are analyzed. Bladder cancer tissue is clearly differentiated from healthy tissue without staining and this opens a new highly promising diagnostic tool for precancer diagnosis. Industrial applications are demonstrated at the corrosion behavior of dental alloys (withdrawal of a widely used alloy, harmless substitutes, improvement of paper glazing, behavior of blood bags upon storage, quality assessment of metal particle preparations for surface enhanced RAMAN spectroscopy, and determination of diffusion coefficient and light fastness in textile fiber dyeing. The latter applications include fluorescence SNOM. Local fluorescence SNOM is also used in the study of partly aggregating dye nanoparticles within resin/varnish preparations. Unexpected new insights are obtained in all of the various fields that cannot be obtained by other techniques.

  13. Transmission RF diffuse optical tomography instrument for human breast imaging

    Science.gov (United States)

    Lee, Kijoon; Konecky, Soren D.; Choe, Regine; Ban, Han Y.; Corlu, Alper; Durduran, Turgut; Yodh, Arjun G.

    2007-07-01

    In this paper, we describe a novel clinical breast diffuse optical tomography (DOT) instrument for CW and RF data acquisition in transmission geometry. It is designed to be able to acquire a massive amount of data in a short amount of time available for patient measurement by using a 209-channel galvo-based fast optical switch and a fast electron-multiplying CCD. In addition to CW measurements, RF measurements were made by using an electro-optic modulator for source modulation and a gain-modulated image intensifier for detection. The patient bed has many clinically-oriented features as well as improved data acquisition rate and transmission RF measurement capability. A series of preliminary results will be shown, including a heterodyne RF experiment for bulk property measurement and a CW experiment for 3D imaging. In order to deal with large data size, a linear reconstruction algorithm that exploits separability of the inverse problem in Fourier domain is used for fast and memory-load-free reconstruction.

  14. Interrogating Biology with Force: Single Molecule High-Resolution Measurements with Optical Tweezers

    OpenAIRE

    Capitanio, Marco; Pavone, Francesco S.

    2013-01-01

    Single molecule force spectroscopy methods, such as optical and magnetic tweezers and atomic force microscopy, have opened up the possibility to study biological processes regulated by force, dynamics of structural conformations of proteins and nucleic acids, and load-dependent kinetics of molecular interactions. Among the various tools available today, optical tweezers have recently seen great progress in terms of spatial resolution, which now allows the measurement of atomic-scale conformat...

  15. Optical-CT imaging of complex 3D dose distributions

    Science.gov (United States)

    Oldham, Mark; Kim, Leonard; Hugo, Geoffrey

    2005-04-01

    The limitations of conventional dosimeters restrict the comprehensiveness of verification that can be performed for advanced radiation treatments presenting an immediate and substantial problem for clinics attempting to implement these techniques. In essence, the rapid advances in the technology of radiation delivery have not been paralleled by corresponding advances in the ability to verify these treatments. Optical-CT gel-dosimetry is a relatively new technique with potential to address this imbalance by providing high resolution 3D dose maps in polymer and radiochromic gel dosimeters. We have constructed a 1st generation optical-CT scanner capable of high resolution 3D dosimetry and applied it to a number of simple and increasingly complex dose distributions including intensity-modulated-radiation-therapy (IMRT). Prior to application to IMRT, the robustness of optical-CT gel dosimetry was investigated on geometry and variable attenuation phantoms. Physical techniques and image processing methods were developed to minimize deleterious effects of refraction, reflection, and scattered laser light. Here we present results of investigations into achieving accurate high-resolution 3D dosimetry with optical-CT, and show clinical examples of 3D IMRT dosimetry verification. In conclusion, optical-CT gel dosimetry can provide high resolution 3D dose maps that greatly facilitate comprehensive verification of complex 3D radiation treatments. Good agreement was observed at high dose levels (>50%) between planned and measured dose distributions. Some systematic discrepancies were observed however (rms discrepancy 3% at high dose levels) indicating further work is required to eliminate confounding factors presently compromising the accuracy of optical-CT 3D gel-dosimetry.

  16. Optical diagnostics for turbulent and multiphase flows: Particle image velocimetry and photorefractive optics

    Energy Technology Data Exchange (ETDEWEB)

    O`Hern, T.J.; Torczynski, J.R.; Shagam, R.N.; Blanchat, T.K.; Chu, T.Y.; Tassin-Leger, A.L.; Henderson, J.A.

    1997-01-01

    This report summarizes the work performed under the Sandia Laboratory Directed Research and Development (LDRD) project ``Optical Diagnostics for Turbulent and Multiphase Flows.`` Advanced optical diagnostics have been investigated and developed for flow field measurements, including capabilities for measurement in turbulent, multiphase, and heated flows. Particle Image Velocimetry (PIV) includes several techniques for measurement of instantaneous flow field velocities and associated turbulence quantities. Nonlinear photorefractive optical materials have been investigated for the possibility of measuring turbulence quantities (turbulent spectrum) more directly. The two-dimensional PIV techniques developed under this LDRD were shown to work well, and were compared with more traditional laser Doppler velocimetry (LDV). Three-dimensional PIV techniques were developed and tested, but due to several experimental difficulties were not as successful. The photorefractive techniques were tested, and both potential capabilities and possible problem areas were elucidated.

  17. Ultrahigh resolution optical coherence tomography imaging of lung structure using Gaussian shaped super continuum sources

    Science.gov (United States)

    Nishizawa, N.; Ishida, S.; Ohta, T.; Itoh, K.; Kitatsuji, M.; Ohshima, H.; Hasegawa, Y.; Matsushima, M.; Kawabe, T.

    2011-03-01

    Optical coherence tomography (OCT) is an emerging technology for non-invasive cross-sectional imaging of biological tissue and material with um resolution. In the field of pulmonary medicine, non-invasive high resolution cross-sectional imaging is desired for investigation of diseases in lung. So far, a few works have been reported about OCT imaging of lung. Since the lung consists of alveoli separated by thin wall, ultrahigh resolution (UHR) OCT is supposed to be effective for the imaging of fine structure in lung tissue. In this work, ex vivo cross-sectional imaging of isolated rat and hamster lungs was demonstrated using UHR-OCT. A 120 nm-wide, high-power, Gaussian-like supercontinuum (SC) was generated at wavelength of 0.8 um region. The generated SC was used in a time-domain OCT system, and UHR-OCT imaging was demonstrated. An ultrahigh resolution of 2.9 um in air and 2.1 um in tissue was obtained. The achieved sensitivity was 105 dB. Using this system, ex vivo UHR-OCT imaging of isolated rat and hamster lungs was demonstrated for the first time. The structures of the trachea, visceral pleura, and alveoli were observed clearly. When saline was instilled into the lung, the penetration depth was improved, and clear images of the fine structure of the lung, including alveoli, were observed owing to the index matching effect. We have also demonstrated the UHR-OCT imaging of lung tissue using 1.3 um and 1.7 um SC sources. As the results, owing to the precise structures of lung tissues and index matching by saline, the finest images were observed with 0.8 um UHR-OCT system.

  18. Development of Two Color Fluorescent Imager and Integrated Fluidic System for Nanosatellite Biology Applications

    Science.gov (United States)

    Wu, Diana Terri; Ricco, Antonio Joseph; Lera, Matthew P.; Timucin, Linda R.; Parra, Macarena P.

    2012-01-01

    Nanosatellites offer frequent, low-cost space access as secondary payloads on launches of larger conventional satellites. We summarize the payload science and technology of the Microsatellite in-situ Space Technologies (MisST) nanosatellite for conducting automated biological experiments. The payload (two fused 10-cm cubes) includes 1) an integrated fluidics system that maintains organism viability and supports growth and 2) a fixed-focus imager with fluorescence and scattered-light imaging capabilities. The payload monitors temperature, pressure and relative humidity, and actively controls temperature. C. elegans (nematode, 50 m diameter x 1 mm long) was selected as a model organism due to previous space science experience, its completely sequenced genome, size, hardiness, and the variety of strains available. Three strains were chosen: two green GFP-tagged strains and one red tdTomato-tagged strain that label intestinal, nerve, and pharyngeal cells, respectively. The integrated fluidics system includes bioanalytical and reservoir modules. The former consists of four 150 L culture wells and a 4x5 mm imaging zone the latter includes two 8 mL fluid reservoirs for reagent and waste storage. The fluidic system is fabricated using multilayer polymer rapid prototyping: laser cutting, precision machining, die cutting, and pressure-sensitive adhesives it also includes eight solenoid-operated valves and one mini peristaltic pump. Young larval-state (L2) nematodes are loaded in C. elegans Maintenance Media (CeMM) in the bioanalytical module during pre-launch assembly. By the time orbit is established, the worms have grown to sufficient density to be imaged and are fed fresh CeMM. The strains are pumped sequentially into the imaging area, imaged, then pumped into waste. Reagent storage utilizes polymer bags under slight pressure to prevent bubble formation in wells or channels. The optical system images green and red fluorescence bands by excitation with blue (473 nm peak

  19. Optical image encryption and hiding based on a modified Mach-Zehnder interferometer.

    Science.gov (United States)

    Li, Jun; Li, Jiaosheng; Shen, Lina; Pan, Yangyang; Li, Rong

    2014-02-24

    A method for optical image hiding and for optical image encryption and hiding in the Fresnel domain via completely optical means is proposed, which encodes original object image into the encrypted image and then embeds it into host image in our modified Mach-Zehnder interferometer architecture. The modified Mach-Zehnder interferometer not only provides phase shifts to record complex amplitude of final encrypted object image on CCD plane but also introduces host image into reference path of the interferometer to hide it. The final encrypted object image is registered as interference patterns, which resemble a Fresnel diffraction pattern of the host image, and thus the secure information is imperceptible to unauthorized receivers. The method can simultaneously realize image encryption and image hiding at a high speed in pure optical system. The validity of the method and its robustness against some common attacks are investigated by numerical simulations and experiments.

  20. Deep Optical Images of Malin 1 Reveal New Features

    Science.gov (United States)

    Galaz, Gaspar; Milovic, Carlos; Suc, Vincent; Busta, Luis; Lizana, Guadalupe; Infante, Leopoldo; Royo, Santiago

    2015-12-01

    We present Megacam deep optical images (g and r) of Malin 1 obtained with the 6.5 m Magellan/Clay telescope, detecting structures down to ˜28 B mag arcsec-2. In order to enhance galaxy features buried in the noise, we use a noise reduction filter based on the total generalized variation regularizator. This method allows us to detect and resolve very faint morphological features, including spiral arms, with a high visual contrast. For the first time, we can appreciate an optical image of Malin 1 and its morphology in full view. The images provide unprecedented detail, compared to those obtained in the past with photographic plates and CCD, including Hubble Space Telescope imaging. We detect two peculiar features in the disk/spiral arms. The analysis suggests that the first one is possibly a background galaxy, and the second is an apparent stream without a clear nature, but could be related to the claimed past interaction between Malin 1 and the galaxy SDSSJ123708.91+142253.2. Malin 1 exhibits features suggesting the presence of stellar associations and clumps of molecular gas, not seen before with such a clarity. Using these images, we obtain a diameter for Malin 1 of 160 kpc, ˜50 kpc larger than previous estimates. A simple analysis shows that the observed spiral arms reach very low luminosity and mass surface densities, to levels much lower than the corresponding values for the Milky Way. This paper includes data gathered with the 6.5 meter Magellan Telescopes located at Las Campanas Observatory, Chile.

  1. Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging

    International Nuclear Information System (INIS)

    For bioluminescence imaging studies in small animals, it is important to be able to accurately localize the three-dimensional (3D) distribution of the underlying bioluminescent source. The spectrum of light produced by the source that escapes the subject varies with the depth of the emission source because of the wavelength-dependence of the optical properties of tissue. Consequently, multispectral or hyperspectral data acquisition should help in the 3D localization of deep sources. In this paper, we describe a framework for fully 3D bioluminescence tomographic image acquisition and reconstruction that exploits spectral information. We describe regularized tomographic reconstruction techniques that use semi-infinite slab or FEM-based diffusion approximations of photon transport through turbid media. Singular value decomposition analysis was used for data dimensionality reduction and to illustrate the advantage of using hyperspectral rather than achromatic data. Simulation studies in an atlas-mouse geometry indicated that sub-millimeter resolution may be attainable given accurate knowledge of the optical properties of the animal. A fixed arrangement of mirrors and a single CCD camera were used for simultaneous acquisition of multispectral imaging data over most of the surface of the animal. Phantom studies conducted using this system demonstrated our ability to accurately localize deep point-like sources and show that a resolution of 1.5 to 2.2 mm for depths up to 6 mm can be achieved. We also include an in vivo study of a mouse with a brain tumour expressing firefly luciferase. Co-registration of the reconstructed 3D bioluminescent image with magnetic resonance images indicated good anatomical localization of the tumour

  2. Calibrated sky imager for aerosol optical properties determination

    Directory of Open Access Journals (Sweden)

    A. Cazorla

    2008-11-01

    Full Text Available The calibrated ground-based sky imager developed in the Marine Physical Laboratory, the Whole Sky Imager (WSI, has been tested to determine optical properties of the atmospheric aerosol. Different neural network-based models calculate the aerosol optical depth (AOD for three wavelengths using the radiance extracted from the principal plane of sky images from the WSI as input parameters. The models use data from a CIMEL CE318 photometer for training and validation and the wavelengths used correspond to the closest wavelengths in both instruments. The spectral dependency of the AOD, characterized by the Ångström exponent α in the interval 440–870, is also derived using the standard AERONET procedure and also with a neural network-based model using the values obtained with a CIMEL CE318. The deviations between the WSI derived AOD and the AOD retrieved by AERONET are within the nominal uncertainty assigned to the AERONET AOD calculation (±0.01, in 80% of the cases. The explanation of data variance by the model is over 92% in all cases. In the case of α, the deviation is within the uncertainty assigned to the AERONET α (±0.1 in 50% for the standard method and 84% for the neural network-based model. The explanation of data variance by the model is 63% for the standard method and 77% for the neural network-based model.

  3. MEMS compatible illumination and imaging micro-optical systems

    Science.gov (United States)

    Bräuer, A.; Dannberg, P.; Duparré, J.; Höfer, B.; Schreiber, P.; Scholles, M.

    2007-01-01

    The development of new MOEMS demands for cooperation between researchers in micromechanics, optoelectronics and microoptics at a very early state. Additionally, microoptical technologies being compatible with structured silicon have to be developed. The microoptical technologies used for two silicon based microsystems are described in the paper. First, a very small scanning laser projector with a volume of less than 2 cm 3, which operates with a directly modulated lasers collimated with a microlens, is shown. The laser radiation illuminates a 2D-MEMS scanning mirror. The optical design is optimized for high resolution (VGA). Thermomechanical stability is realized by design and using a structured ceramics motherboard. Secondly, an ultrathin CMOS-camera having an insect inspired imaging system has been realized. It is the first experimental realization of an artificial compound eye. Micro-optical design principles and technology is used. The overall thickness of the imaging system is only 320 μm, the diagonal field of view is 21°, and the f-number is 2.6. The monolithic device consists of an UV-replicated microlens array upon a thin silica substrate with a pinhole array in a metal layer on the back side. The pitch of the pinholes differs from that of the lens array to provide individual viewing angle for each channel. The imaging chip is directly glued to a CMOS sensor with adapted pitch. The whole camera is less than 1mm thick. New packaging methods for these systems are under development.

  4. Noise-compensated homotopic non-local regularized reconstruction for rapid retinal optical coherence tomography image acquisitions

    International Nuclear Information System (INIS)

    Optical coherence tomography (OCT) is a minimally invasive imaging technique, which utilizes the spatial and temporal coherence properties of optical waves backscattered from biological material. Recent advances in tunable lasers and infrared camera technologies have enabled an increase in the OCT imaging speed by a factor of more than 100, which is important for retinal imaging where we wish to study fast physiological processes in the biological tissue. However, the high scanning rate causes proportional decrease of the detector exposure time, resulting in a reduction of the system signal-to-noise ratio (SNR). One approach to improving the image quality of OCT tomograms acquired at high speed is to compensate for the noise component in the images without compromising the sharpness of the image details. In this study, we propose a novel reconstruction method for rapid OCT image acquisitions, based on a noise-compensated homotopic modified James-Stein non-local regularized optimization strategy. The performance of the algorithm was tested on a series of high resolution OCT images of the human retina acquired at different imaging rates. Quantitative analysis was used to evaluate the performance of the algorithm using two state-of-art denoising strategies. Results demonstrate significant SNR improvements when using our proposed approach when compared to other approaches. A new reconstruction method based on a noise-compensated homotopic modified James-Stein non-local regularized optimization strategy was developed for the purpose of improving the quality of rapid OCT image acquisitions. Preliminary results show the proposed method shows considerable promise as a tool to improve the visualization and analysis of biological material using OCT

  5. Multimode optical imaging of small animals: development and applications

    Science.gov (United States)

    Hwang, J. Y.; Moffatt-Blue, C.; Equils, O.; Fujita, M.; Jeong, J.; Khazenzon, N. M.; Lindsley, E.; Ljubimova, J.; Nowatzyk, A. G.; Farkas, D. L.; Wachsmann-Hogiu, S.

    2007-02-01

    We present an optical system for small animal imaging that can combine various in vivo imaging modalities, including fluorescence (intensity and lifetime), spectral, and trans-illumination imaging. This system consists of light-tight box with ultrafast pulsed or cw laser light excitation, motorized translational and rotational stages, a telecentric lens for detection, and a cooled CCD camera that can be coupled to an ultrafast time-gated intensifier. All components are modular, making possible laser excitation at various wavelengths and pulse lengths, and signal detection in a variety of ways (multimode). Results of drug nanoconjugate carrier delivery studies in mice are presented. Conventional and spectrally-resolved fluorescence images reveal details of in vivo drug nanoconjugate carrier accumulation within the tumor region and several organs in real time. By multi-spectral image analysis of ex vivo specimens from the same mice, we were able to evaluate the extent and topology of drug nanoconjugate carrier distribution into specific organs and the tumor itself.

  6. 3D Imaging of Nanoparticle Distribution in Biological Tissue by Laser-Induced Breakdown Spectroscopy

    Science.gov (United States)

    Gimenez, Y.; Busser, B.; Trichard, F.; Kulesza, A.; Laurent, J. M.; Zaun, V.; Lux, F.; Benoit, J. M.; Panczer, G.; Dugourd, P.; Tillement, O.; Pelascini, F.; Sancey, L.; Motto-Ros, V.

    2016-01-01

    Nanomaterials represent a rapidly expanding area of research with huge potential for future medical applications. Nanotechnology indeed promises to revolutionize diagnostics, drug delivery, gene therapy, and many other areas of research. For any biological investigation involving nanomaterials, it is crucial to study the behavior of such nano-objects within tissues to evaluate both their efficacy and their toxicity. Here, we provide the first account of 3D label-free nanoparticle imaging at the entire-organ scale. The technology used is known as laser-induced breakdown spectroscopy (LIBS) and possesses several advantages such as speed of operation, ease of use and full compatibility with optical microscopy. We then used two different but complementary approaches to achieve 3D elemental imaging with LIBS: a volume reconstruction of a sliced organ and in-depth analysis. This proof-of-concept study demonstrates the quantitative imaging of both endogenous and exogenous elements within entire organs and paves the way for innumerable applications. PMID:27435424

  7. Imaging cutaneous T-Cell lymphoma with optical coherence tomography

    DEFF Research Database (Denmark)

    Ring, H.C.; Hansen Stamp, I.M.; Jemec, G.B.E.

    2012-01-01

    Aim: To investigate the presentation of a patch-stage cutaneous T-cell lymphoma (CTCL) using optical coherence tomography (OCT). Methods: A patient with a patch caused by CTCL was photographed digitally, OCT-scanned and biopsied. A normal skin area adjacent to the patch was OCT-scanned for compar......Aim: To investigate the presentation of a patch-stage cutaneous T-cell lymphoma (CTCL) using optical coherence tomography (OCT). Methods: A patient with a patch caused by CTCL was photographed digitally, OCT-scanned and biopsied. A normal skin area adjacent to the patch was OCT.......13 mm. A good immediate correlation was found between histology and OCT imaging of the sample. Conclusion: The aetiology of the elongated structures is thought to be lymphomatous infiltrates. Similar findings have been described in ocular lymphoma and may therefore be an important characteristic...

  8. Spectrally balanced detection for optical frequency domain imaging.

    Science.gov (United States)

    Chen, Yueli; de Bruin, Daniel M; Kerbage, Charles; de Boer, Johannes F

    2007-12-10

    In optical frequency domain imaging (OFDI) or swept-source optical coherence tomography, balanced detection is required to suppress relative intensity noise (RIN). A regular implementation of balanced detection by combining reference and sample arm signal in a 50/50 coupler and detecting the differential output with a balanced receiver is however, not perfect. Since the splitting ratio of the 50/50 coupler is wavelength dependent, RIN is not optimally canceled at the edges of the wavelength sweep. The splitting ratio has a nearly linear shift of 0.4% per nanometer. This brings as much as +/-12% deviation at the margins of wavelength-swept range centered at 1060nm. We demonstrate a RIN suppression of 33dB by spectrally corrected balanced detection, 11dB more that regular balanced detection. PMID:19550929

  9. Image magnification in transformation optics devices based on tapered waveguides

    Science.gov (United States)

    Zimmerman, William; Jensen, Christopher; Smolyaninova, Vera; Smolyaninov, Igor

    Recent progress in metamaterial and transformation optics (TO) research gave rise to such fascinating devices as perfect lenses, invisibility cloaks, and numerous other unusual electromagnetic devices. However, the metamaterials have problems with low-loss broadband performance and complexity of fabrication, especially in the visible frequency range. Our TO devices allow us to circumvent these difficulties by using lithographically defined metal/dielectric waveguides to emulate metamaterial properties. Adiabatic variations of the waveguide shape enable control of the effective refractive index experienced by light propagating inside the waveguide. The achieved image magnification is consistent with numerical simulations. We have studied wavelength and polarization dependent performance of the waveguides. Our experimental designs appear to be broadband, which has been verified in the 480-633 nm range. These novel optical devices considerably extend our ability to control light on sub-micrometer scales. This research was supported by the NSF Grant DMR-1104676.

  10. Nonlinear optical imaging of defects in cubic silicon carbide epilayers.

    Science.gov (United States)

    Hristu, Radu; Stanciu, Stefan G; Tranca, Denis E; Matei, Alecs; Stanciu, George A

    2014-06-11

    Silicon carbide is one of the most promising materials for power electronic devices capable of operating at extreme conditions. The widespread application of silicon carbide power devices is however limited by the presence of structural defects in silicon carbide epilayers. Our experiment demonstrates that optical second harmonic generation imaging represents a viable solution for characterizing structural defects such as stacking faults, dislocations and double positioning boundaries in cubic silicon carbide layers. X-ray diffraction and optical second harmonic rotational anisotropy were used to confirm the growth of the cubic polytype, atomic force microscopy was used to support the identification of silicon carbide defects based on their distinct shape, while second harmonic generation microscopy revealed the detailed structure of the defects. Our results show that this fast and noninvasive investigation method can identify defects which appear during the crystal growth and can be used to certify areas within the silicon carbide epilayer that have optimal quality.

  11. Advanced magneto-optical microscopy: Imaging from picoseconds to centimeters - imaging spin waves and temperature distributions (invited

    Directory of Open Access Journals (Sweden)

    Necdet Onur Urs

    2016-05-01

    Full Text Available Recent developments in the observation of magnetic domains and domain walls by wide-field optical microscopy based on the magneto-optical Kerr, Faraday, Voigt, and Gradient effect are reviewed. Emphasis is given to the existence of higher order magneto-optical effects for advanced magnetic imaging. Fundamental concepts and advances in methodology are discussed that allow for imaging of magnetic domains on various length and time scales. Time-resolved imaging of electric field induced domain wall rotation is shown. Visualization of magnetization dynamics down to picosecond temporal resolution for the imaging of spin-waves and magneto-optical multi-effect domain imaging techniques for obtaining vectorial information are demonstrated. Beyond conventional domain imaging, the use of a magneto-optical indicator technique for local temperature sensing is shown.

  12. Designer genes. Recombinant antibody fragments for biological imaging

    International Nuclear Information System (INIS)

    expression, combined with novel specificities that will arise form advances in genomic and combinatorial approaches to target discovery, will usher in a new era of recombinant antibodies for biological imaging

  13. Cell Wall Biology: Perspectives from Cell Wall Imaging

    Institute of Scientific and Technical Information of China (English)

    Kieran J.D.Lee; Susan E.Marcus; J.Paul Knox

    2011-01-01

    Polysaccharide-rich plant cell walls are important biomaterials that underpin plant growth,are major repositories for photosynthetically accumulated carbon,and,in addition,impact greatly on the human use of plants. Land plant cell walls contain in the region of a dozen major polysaccharide structures that are mostly encompassed by cellulose,hemicelluloses,and pectic polysaccharides. During the evolution of land plants,polysaccharide diversification appears to have largely involved structural elaboration and diversification within these polysaccharide groups. Cell wall chemistry is well advanced and a current phase of cell wall science is aimed at placing the complex polysaccharide chemistry in cellular contexts and developing a detailed understanding of cell wall biology. Imaging cell wall glycomes is a challenging area but recent developments in the establishment of cell wall molecular probe panels and their use in high throughput procedures are leading to rapid advances in the molecular understanding of the spatial heterogeneity of individual cell walls and also cell wall differences at taxonomic levels. The challenge now is to integrate this knowledge of cell wall heterogeneity with an understanding of the molecular and physiological mechanisms that underpin cell wall properties and functions.

  14. Matrix Effects in Biological Mass Spectrometry Imaging: Identification and Compensation

    Energy Technology Data Exchange (ETDEWEB)

    Lanekoff, Ingela T.; Stevens, Susan; Stenzel-Poore, Mary; Laskin, Julia

    2014-07-21

    Matrix effects in mass spectrometry imaging (MSI) may affect the observed molecular distribution in chemical and biological systems. In this study, we introduce an experimental approach that efficiently compensates for matrix effects in nanospray desorption electrospray ionization (nano-DESI) MSI without introducing any complexity into the experimental protocol. We demonstrate compensation for matrix effects in nano-DESI MSI of phosphatidylcholine (PC) in normal and ischemic mouse brain tissue by doping the nano-DESI solvent with PC standards. Specifically, we use mouse brain tissue of a middle cerebral artery occlusion (MCAO) stroke model with an ischemic region localized to one hemisphere of the brain. Due to similar suppression in ionization of endogenous PC molecules extracted from the tissue and PC standards added to the solvent, matrix effects are eliminated by normalizing the intensity of the sodium and potassium adducts of endogenous PC to the intensity of the corresponding adduct of the PC standard. This approach efficiently compensates for signal variations resulting from differences in the local concentrations of sodium and potassium in tissue sections and from the complexity of the extracted analyte mixture derived from local variations in molecular composition.

  15. Laparoscopic optical coherence tomographic imaging of human ovarian cancer

    Science.gov (United States)

    Hariri, Lida P.; Bonnema, Garret T.; Schmidt, Kathy; Korde, Vrushali; Winkler, Amy M.; Hatch, Kenneth; Brewer, Molly; Barton, Jennifer K.

    2009-02-01

    Ovarian cancer is the fourth leading cause of cancer-related death among women. If diagnosed at early stages, 5-year survival rate is 94%, but drops to 68% for regional disease and 29% for distant metastasis; only 19% of cases are diagnosed at early, localized stages. Optical coherence tomography is a recently emerging non-destructive imaging technology, achieving high axial resolutions (10-20 µm) at imaging depths up to 2 mm. Previously, we studied OCT in normal and diseased human ovary ex vivo. Changes in collagen were suggested with several images that correlated with changes in collagen seen in malignancy. Areas of necrosis and blood vessels were also visualized using OCT, indicative of an underlying tissue abnormality. We recently developed a custom side-firing laparoscopic OCT (LOCT) probe fabricated for in vivo imaging. The LOCT probe, consisting of a 38 mm diameter handpiece terminated in a 280 mm long, 4.6 mm diameter tip for insertion into the laparoscopic trocar, is capable of obtaining up to 9.5 mm image lengths at 10 µm axial resolution. In this pilot study, we utilize the LOCT probe to image one or both ovaries of 17 patients undergoing laparotomy or transabdominal endoscopy and oophorectomy to determine if OCT is capable of differentiating normal and neoplastic ovary. We have laparoscopically imaged the ovaries of seventeen patients with no known complications. Initial data evaluation reveals qualitative distinguishability between the features of undiseased post-menopausal ovary and the cystic, non-homogenous appearance of neoplastic ovary such as serous cystadenoma and endometroid adenocarcinoma.

  16. Imaging of Stellar Surfaces with the Navy Precision Optical Interferometer

    Science.gov (United States)

    Jorgensen, A.; Schmitt, H. R.; van Belle, G. T.; Hutter, Clark; Mozurkewich, D.; Armstrong, J. T.; Baines, E. K.; Restaino, S. R.

    The Navy Precision Optical Interferometer (NPOI) has a unique layout which is particularly well-suited for high-resolution interferometric imaging. By combining the NPOI layout with a new data acquisition and fringe tracking system we are progressing toward a imaging capability which will exceed any other interferometer in operation. The project, funded by the National Science Foundation, combines several existing advances and infrastructure at NPOI with modest enhancements. For optimal imaging there are several requirements that should be fulfilled. The observatory should be capable of measuring visibilities on a wide range of baseline lengths and orientations, providing complete UV coverage in a short period of time. It should measure visibility amplitudes with good SNR on all baselines as critical imaging information is often contained in low-amplitude visibilities. It should measure the visibility phase on all baselines. The technologies which can achieve this are the NPOI Y-shaped array with (nearly) equal spacing between telescopes and an ability for rapid configuration. Placing 6-telescopes in a row makes it possible to measure visibilities into the 4th lobe of the visibility function. By arranging the available telescopes carefully we will be able to switch, every few days, between 3 different 6-station chains which provide symmetric coverage in the UV (Fourier) plane without moving any telescopes, only by moving beam relay mirrors. The 6-station chains are important to achieve the highest imaging resolution, and switching rapidly between station chains provides uniform coverage. Coherent integration techniques can be used to obtain good SNR on very small visibilities. Coherently integrated visibilities can be used for imaging with standard radio imaging packages such as AIPS. The commissioning of one additional station, the use of new data acquisition hardware and fringe tracking algorithms are the enhancements which make this project possible.

  17. Recent developments in widely tunable and high peak power ultrafast laser sources and their adoption in biological imaging

    Science.gov (United States)

    Klein, J.

    2016-03-01

    Widely tunable ultrafast lasers have enabled a large number of biological imaging techniques including point scanning multiphoton excited fluorescence (MPEF), SHG/THG and stimulated Raman imaging. Tunable ultrafast lasers offer spectral agility, covering the entire relative transparency window in live tissue (700-1300nnm) and flexibility with multi-color, synchronized outputs to support sophisticated label free techniques (e.g. stimulated Raman modalities). More recently newly available high peak power lasers based on Ytterbium technology drive advances in two-photon light-sheet, 3 photon excited fluorescence and holographic patterning for optogenetics photo-stimulation. These laser platforms offer a unique blend of compactness, ease of use and cost efficiency, and ideally complement tunable platforms typically based on Ti:Sapphire and IR optical parametric oscillators (OPO). We present various types of ultrafast laser architectures, link their optical characteristics to key bio-imaging requirements, and present relevant examples and images illustrating their impact in biological science. In particular we review the use of ultrafast lasers in optogenetics for photo-stimulation of networks of neurons.

  18. INFLUENCE OF OPTICAL AND NEURAL FACTORS ON QUALITY OF THE PERCEIVED IMAGE

    OpenAIRE

    Karitāns, Varis

    2012-01-01

    INFLUENCE OF OPTICAL AND NEURAL FACTORS ON QUALITY OF THE PERCEIVED IMAGE An eye is an optical system suffering from optical aberrations. Ocular aberrations influence both visual perception and visibility of retinal features. As technologies of adaptive optics advanced it became possible to control optical quality of an eye at very high level. Dependence of visual functions on optical quality of an eye is widely studied. There is no scientific agreement regarding the role o...

  19. Nonlinear optical imaging and Raman microspectrometry of the cell nucleus throughout the cell cycle.

    Science.gov (United States)

    Pliss, Artem; Kuzmin, Andrey N; Kachynski, Aliaksandr V; Prasad, Paras N

    2010-11-17

    Fundamental understanding of cellular processes at molecular level is of considerable importance in cell biology as well as in biomedical disciplines for early diagnosis of infection and cancer diseases, and for developing new molecular medicine-based therapies. Modern biophotonics offers exclusive capabilities to obtain information on molecular composition, organization, and dynamics in a cell by utilizing a combination of optical spectroscopy and optical imaging. We introduce here a combination of Raman microspectrometry, together with coherent anti-Stokes Raman scattering (CARS) and two-photon excited fluorescence (TPEF) nonlinear optical microscopy, to study macromolecular organization of the nucleus throughout the cell cycle. Site-specific concentrations of proteins, DNA, RNA, and lipids were determined in nucleoli, nucleoplasmic transcription sites, nuclear speckles, constitutive heterochromatin domains, mitotic chromosomes, and extrachromosomal regions of mitotic cells by quantitative confocal Raman microspectrometry. A surprising finding, obtained in our study, is that the local concentration of proteins does not increase during DNA compaction. We also demonstrate that postmitotic DNA decondensation is a gradual process, continuing for several hours. The quantitative Raman spectroscopic analysis was corroborated with CARS/TPEF multimodal imaging to visualize the distribution of protein, DNA, RNA, and lipid macromolecules throughout the cell cycle.

  20. Optical coherence tomography imaging of ocular and periocular tumours

    Science.gov (United States)

    Medina, Carlos A; Plesec, Thomas; Singh, Arun D

    2014-01-01

    Optical coherence tomography (OCT) has become pivotal in the practice of ophthalmology. Similar to other ophthalmic subspecialties, ophthalmic oncology has also incorporated OCT into practice. Anterior segment OCT (AS-OCT), ultra-high resolution OCT (UHR-OCT), spectral domain OCT (SD-OCT) and enhanced depth imaging OCT (EDI-OCT), have all been described to be helpful in the diagnosis, treatment planning and monitoring response of ocular and periocular tumours. Herein we discuss the role of OCT including the advantages and limitations of its use in the setting of common intraocular and adnexal tumours. PMID:24599420

  1. Pre-Juno Optical Analysis of Jupiter's Atmosphere with the NMSU Acousto-optic Imaging Camera

    Science.gov (United States)

    Dahl, Emma; Chanover, Nancy J.; Voelz, David; Kuehn, David M.; Strycker, Paul D.

    2016-10-01

    Jupiter's upper atmosphere is a highly dynamic system in which clouds and storms change color, shape, and size on variable timescales. The exact mechanism by which the deep atmosphere affects these changes in the uppermost cloud deck is still unknown. With Juno's arrival at Jupiter in July 2016, the thermal radiation from the deep atmosphere will be measurable with the spacecraft's Microwave Radiometer. By taking detailed optical measurements of Jupiter's uppermost cloud deck in conjunction with Juno's microwave observations, we can provide a context in which to better understand these observations. This data will also provide a complement to the near-IR sensitivity of the Jovian InfraRed Auroral Mapper and will expand on the limited spectral coverage of JunoCam. Ultimately, we can utilize the two complementary datasets in order to thoroughly characterize Jupiter's atmosphere in terms of its vertical cloud structure, color distribution, and dynamical state throughout the Juno era. In order to obtain high spectral resolution images of Jupiter's atmosphere in the optical regime, we use the New Mexico State University Acousto-optic Imaging Camera (NAIC). NAIC contains an acousto-optic tunable filter, which allows us to take hyperspectral image cubes of Jupiter from 450-950 nm at an average spectral resolution (λ/dλ) of 242. We present an analysis of our pre-Juno dataset obtained with NAIC at the Apache Point Observatory 3.5-m telescope during the night of March 28, 2016. Under primarily photometric conditions, we obtained 6 hyperspectral image cubes of Jupiter over the course of the night, totaling approximately 2,960 images. From these data we derive low-resolution optical spectra of the Great Red Spot and a representative belt and zone to compare with previous work and laboratory measurements of candidate chromophore materials. Future work will focus on radiative transfer modeling to elucidate the Jovian cloud structure during the Juno era. This work was supported

  2. Understanding the Phase Contrast Optics to Restore Artifact-free Microscopy Images for Segmentation

    OpenAIRE

    Yin, Zhaozheng; Kanade, Takeo; Chen, Mei

    2012-01-01

    Phase contrast, a noninvasive microscopy imaging technique, is widely used to capture time-lapse images to monitor the behavior of transparent cells without staining or altering them. Due to the optical principle, phase contrast microscopy images contain artifacts such as the halo and shade-off that hinder image segmentation, a critical step in automated microscopy image analysis. Rather than treating phase contrast microscopy images as general natural images and applying generic image proces...

  3. Adaptive optics microscopy enhances image quality in deep layers of CLARITY processed brains of YFP-H mice

    Science.gov (United States)

    Reinig, Marc R.; Novack, Samuel W.; Tao, Xiaodong; Ermini, Florian; Bentolila, Laurent A.; Roberts, Dustin G.; MacKenzie-Graham, Allan; Godshalk, S. E.; Raven, M. A.; Kubby, Joel

    2016-03-01

    Optical sectioning of biological tissues has become the method of choice for three-dimensional histological analyses. This is particularly important in the brain were neurons can extend processes over large distances and often whole brain tracing of neuronal processes is desirable. To allow deeper optical penetration, which in fixed tissue is limited by scattering and refractive index mismatching, tissue-clearing procedures such as CLARITY have been developed. CLARITY processed brains have a nearly uniform refractive index and three-dimensional reconstructions at cellular resolution have been published. However, when imaging in deep layers at submicron resolution some limitations caused by residual refractive index mismatching become apparent, as the resulting wavefront aberrations distort the microscopic image. The wavefront can be corrected with adaptive optics. Here, we investigate the wavefront aberrations at different depths in CLARITY processed mouse brains and demonstrate the potential of adaptive optics to enable higher resolution and a better signal-to-noise ratio. Our adaptive optics system achieves high-speed measurement and correction of the wavefront with an open-loop control using a wave front sensor and a deformable mirror. Using adaptive optics enhanced microscopy, we demonstrate improved image quality wavefront, point spread function, and signal to noise in the cortex of YFP-H mice.

  4. Resonant Doppler imaging with Fourier domain optical coherence tomography

    Science.gov (United States)

    Leitgeb, Rainer A.; Szklumowska, Anna; Pircher, Michael; Gotzinger, Erich; Fercher, Adolf F.

    2005-04-01

    Fourier Domain Optical Coherene Tomography (FD OCT) is a high speed imaging modality with increased sensitivity as compared to standard time domain (TD) OCT. The higher sensitivity is especially important, if strongly scattering tissue such as blood is investigated. Recently it could be shown that retinal blood flow can be assessed in-vivo by high speed FD OCT. However the detection bandwidth of color Doppler (CD) FDOCT is strongly limited due to blurring of the detected interference fringes during exposure. This leads to a loss of sensitivity for detection of fast changes in tissue. Using a moving mirror as a reference one can effectively increase the detection bandwidth for CD FDOCT and perform perfusion sectioning. The modality is called resonant CD FDOCT imaging. The principle of the method is presented and experimentally verified.

  5. MICADO: the E-ELT Adaptive Optics Imaging Camera

    CERN Document Server

    Davies, R

    2010-01-01

    MICADO is the adaptive optics imaging camera for the E-ELT. It has been designed and optimised to be mounted to the LGS-MCAO system MAORY, and will provide diffraction limited imaging over a wide (about 1 arcmin) field of view. For initial operations, it can also be used with its own simpler AO module that provides on-axis diffraction limited performance using natural guide stars. We discuss the instrument's key capabilities and expected performance, and show how the science drivers have shaped its design. We outline the technical concept, from the opto-mechanical design to operations and data processing. We describe the AO module, summarise the instrument performance, and indicate some possible future developments.

  6. Optical design of MWIR imaging spectrometer with a cold slit

    Science.gov (United States)

    Zhou, Shiyao; Wang, Yueming; Qian, Liqun; Yuan, Liyin; Wang, Jianyu

    2016-05-01

    MWIR imaging spectrometer is promising in detecting spectral signature of high temperature object such as jet steam, guided missile and explosive gas. This paper introduces an optical design of a MWIR imaging spectrometer with a cold slit sharply reducing the stray radiation from exterior environment and interior structure. The spectrometer is composed of a slit, a spherical prism as disperser, two concentric spheres and a correction lens. It has a real entrance pupil to match the objective and for setting the infrared cold shield near the slit and a real exit pupil to match the cold shield of the focal plane array (FPA). There are two cooled parts, one includes the aperture stop and slit, and the other is the exit pupil and the FPA with two specially positioned cooled shields. A detailed stray radiation analysis is represented which demonstrates the outstanding effect of this system in background radiation restraint.

  7. Reflectance of Asteroid 4179 Toutatis Based on Space Optical Image

    Science.gov (United States)

    Zhao, D. F.; Liu, P.; Zhao, W.; Huang, C. N.; Zhang, H. W.; Tang, X. L.

    2016-01-01

    On 2012 December 13, Chang'e-2 probe made a success flyby for Asteroid 4179 Toutatis in deep space of about 7 million kilometers away from the earth, and acquired a series of optical images with high resolution better than 3 m. In this paper, we process the radiation calibration data of imaging camera by least square fitting method, to obtain the absolute calibration coefficient and relative calibration correction matrix, and to recover original intensity of asteroid and its real surface radiance. According to the Nicodemus' reflectance definition proposed by Hapke, the directional-hemispherical reflectance of Toutatis is obtained. The average surface albedo in R, G, and B spectrum bands are 0.2083, 0.1269, and 0.1346, respectively, and the asteroid's surface albedo is 0.1566. Data indicate that, Toutatis is, somewhat, a red body in visible spectrum.

  8. Optimized optical clearing method for imaging central nervous system

    Science.gov (United States)

    Yu, Tingting; Qi, Yisong; Gong, Hui; Luo, Qingming; Zhu, Dan

    2015-03-01

    The development of various optical clearing methods provides a great potential for imaging entire central nervous system by combining with multiple-labelling and microscopic imaging techniques. These methods had made certain clearing contributions with respective weaknesses, including tissue deformation, fluorescence quenching, execution complexity and antibody penetration limitation that makes immunostaining of tissue blocks difficult. The passive clarity technique (PACT) bypasses those problems and clears the samples with simple implementation, excellent transparency with fine fluorescence retention, but the passive tissue clearing method needs too long time. In this study, we not only accelerate the clearing speed of brain blocks but also preserve GFP fluorescence well by screening an optimal clearing temperature. The selection of proper temperature will make PACT more applicable, which evidently broaden the application range of this method.

  9. Noncontact optical imaging in mice with full angular coverage and automatic surface extraction

    Science.gov (United States)

    Meyer, Heiko; Garofalakis, Anikitos; Zacharakis, Giannis; Psycharakis, Stylianos; Mamalaki, Clio; Kioussis, Dimitris; Economou, Eleftherios N.; Ntziachristos, Vasilis; Ripoll, Jorge

    2007-06-01

    During the past decade, optical imaging combined with tomographic approaches has proved its potential in offering quantitative three-dimensional spatial maps of chromophore or fluorophore concentration in vivo. Due to its direct application in biology and biomedicine, diffuse optical tomography (DOT) and its fluorescence counterpart, fluorescence molecular tomography (FMT), have benefited from an increase in devoted research and new experimental and theoretical developments, giving rise to a new imaging modality. The most recent advances in FMT and DOT are based on the capability of collecting large data sets by using CCDs as detectors, and on the ability to include multiple projections through recently developed noncontact approaches. For these to be implemented, we have developed an imaging setup that enables three-dimensional imaging of arbitrary shapes in fluorescence or absorption mode that is appropriate for small animal imaging. This is achieved by implementing a noncontact approach both for sources and detectors and coregistering surface geometry measurements using the same CCD camera. A thresholded shadowgrammetry approach is applied to the geometry measurements to retrieve the surface mesh. We present the evaluation of the system and method in recovering three-dimensional surfaces from phantom data and live mice. The approach is used to map the measured in vivo fluorescence data onto the tissue surface by making use of the free-space propagation equations, as well as to reconstruct fluorescence concentrations inside highly scattering tissuelike phantom samples. Finally, the potential use of this setup for in vivo small animal imaging and its impact on biomedical research is discussed.

  10. 3D reconstruction of SEM images by use of optical photogrammetry software.

    Science.gov (United States)

    Eulitz, Mona; Reiss, Gebhard

    2015-08-01

    Reconstruction of the three-dimensional (3D) surface of an object to be examined is widely used for structure analysis in science and many biological questions require information about their true 3D structure. For Scanning Electron Microscopy (SEM) there has been no efficient non-destructive solution for reconstruction of the surface morphology to date. The well-known method of recording stereo pair images generates a 3D stereoscope reconstruction of a section, but not of the complete sample surface. We present a simple and non-destructive method of 3D surface reconstruction from SEM samples based on the principles of optical close range photogrammetry. In optical close range photogrammetry a series of overlapping photos is used to generate a 3D model of the surface of an object. We adapted this method to the special SEM requirements. Instead of moving a detector around the object, the object itself was rotated. A series of overlapping photos was stitched and converted into a 3D model using the software commonly used for optical photogrammetry. A rabbit kidney glomerulus was used to demonstrate the workflow of this adaption. The reconstruction produced a realistic and high-resolution 3D mesh model of the glomerular surface. The study showed that SEM micrographs are suitable for 3D reconstruction by optical photogrammetry. This new approach is a simple and useful method of 3D surface reconstruction and suitable for various applications in research and teaching.

  11. The application of optical coherence tomography to image subsurface tissue structure of Antarctic krill Euphausia superba.

    Directory of Open Access Journals (Sweden)

    Nicola Bellini

    Full Text Available Many small open ocean animals, such as Antarctic krill, are an important part of marine ecosystems. To discover what will happen to animals such as krill in a changing ocean, experiments are run in aquaria where conditions can be controlled to simulate water characteristics predicted to occur in the future. The response of individual animals to changing water conditions can be hard to observe, and with current observation techniques it is very difficult to follow the progress of an individual animal through its life. Optical coherence tomography (OCT is an optical imaging technique that allows images at high resolution to be obtained from depths up to a few millimeters inside biological specimens. It is compatible with in vivo imaging and can be used repeatedly on the same specimens. In this work, we show how OCT may be applied to post mortem krill samples and how important physiological data such as shell thickness and estimates of organ volume can be obtained. Using OCT we find an average value for the thickness of krill exoskeleton to be (30±4 µm along a 1 cm length of the animal body. We also show that the technique may be used to provide detailed imagery of the internal structure of a pleopod joint and provide an estimate for the heart volume of (0.73±0.03 mm3.

  12. Design of a fiber optic image transmission link

    Science.gov (United States)

    Redd, Justin D.

    1991-12-01

    An original design is presented for a fiber optic based digital image transmission link operating at a serial bit rate of 250 Mbits/Second. The link is designed as an integral part of an airborne infrared imaging system with particular emphasis on avoiding problems associated with aircraft electromagnetic interference (EMI). Unique features include simplicity (single PC board transmitter and receiver), low power, low cost (under $3,000), and use of the latest off-the-shelf components (including the Gazelle GA9011/GA9012 HOT ROD chip set). Theoretical modeling is used to predict a bit error rate of better than 10 to the minus 15th power, while actual measurements include transmission of over 10 to 13th power bits without any errors (measured bit error rate of at least 10 to the minus 13th power). Test results also show that the link is capable of transmitting 640 x 480 pixel (12 bits per pixel) images with no significant image degradation.

  13. A Complete Bank of Optical Images of the ICRF QSOs

    Science.gov (United States)

    Humberto Andrei, Alexandre; Taris, Francois; Anton, Sonia; Bourda, Geraldine; Damljanovic, Goran; Souchay, Jean; Vieira Martins, Roberto; Pursimo, Tapio; Barache, Christophe; Nepomuceno da Silva Neto, Dario; Fernandes Coelho, Bruno David

    2015-08-01

    We have been developing a systematic effort to collect good quality images of the optical counterpart of ICRF sources, in particular for those that have been regularly radio surveyed either for future implementation at high frequencies and/or those that will be the link sources between the ICRF and the Gaia CRF. Observations have been taken at the LNA/Brazil, CASLEO/Argentina, NOT/Spain, LFOA/Austria, Rozhen/Bulgária, and ASV/Serbia. In complement images were collected from the SDSS. As a step to implement such image data bank and make it publicly available through the IERS service we present its description, that comprises for each source the number of measurements, filter, pixel scale, size of field, and seeing at each observation. The photometry analysis is centered on the morphology, since there remain still cases in which the host galaxy is overwhelming, and many cases in which the host asks for a non-stellar PSF modeling. On basis of the neighbor stars we assign magnitudes and variability whenever possible. Finally, assisted by previous literature, the redshift and luminosity are used to derive astrophysical quantities, in special the absolute magnitude, SED and spectral index. Moreover, since Gaia will not obtain direct images of the observed sources, the morphology and magnitude becomes useful as templates onto which assembling and interpreting the one-dimensional and uncontinuous line spread function samplings that will be delivered by Gaia for each QSO.

  14. Optical imaging of luminescence for in vivo quantification of gene electrotransfer in mouse muscle and knee

    Directory of Open Access Journals (Sweden)

    Scherman D

    2006-03-01

    Full Text Available Abstract Background Optical imaging is an attractive non-invasive way to evaluate the expression of a transferred DNA, mainly thanks to its lower cost and ease of realization. In this study optical imaging was evaluated for monitoring and quantification of the mouse knee joint and tibial cranial muscle electrotransfer of a luciferase encoding plasmid. Optical imaging was applied to study the kinetics of luciferase expression in both tissues. Results The substrate of luciferase (luciferin was injected either intraperitonealy (i.p. or in situ into the muscle or the knee joint. Luminescence resulting from the luciferase-luciferin reaction was measured in vivo with a cooled CCD camera and/or in vitro on tissue lysate. Maximal luminescence of the knee joint and muscle after i.p. (2.5 mg or local injection of luciferin (50 μg in the knee joint, 100 μg in the muscle were highly correlated. With the local injection procedure adopted, in vivo and in vitro luminescences measured on the same muscles significantly correlated. Luminescence measurements were reproducible and the signal level was proportional to the amount of plasmid injected. In vivo luciferase activity in the electrotransfered knee joint was detected for two weeks. Intramuscular electrotransfer of 0.3 or 3 μg of plasmid led to stable luciferase expression for 62 days, whereas injecting 30 μg of plasmid resulted in a drop of luminescence three weeks after electrotransfer. These decreases were partially associated with the development of an immune response. Conclusion A particular advantage of the i.p. injection of substrate is a widespread distribution at luciferase production sites. We have also highlighted advantages of local injection as a more sensitive detection method with reduced substrate consumption. Besides, this route of injection is relatively free of uncontrolled parameters, such as diffusion to the target organ, crossing of biological barriers and evidencing variations in

  15. Contrast-enhanced optical coherence tomography with picomolar sensitivity for functional in vivo imaging

    Science.gov (United States)

    Liba, Orly; Sorelle, Elliott D.; Sen, Debasish; de La Zerda, Adam

    2016-03-01

    Optical Coherence Tomography (OCT) enables real-time imaging of living tissues at cell-scale resolution over millimeters in three dimensions. Despite these advantages, functional biological studies with OCT have been limited by a lack of exogenous contrast agents that can be distinguished from tissue. Here we report an approach to functional OCT imaging that implements custom algorithms to spectrally identify unique contrast agents: large gold nanorods (LGNRs). LGNRs exhibit 110-fold greater spectral signal per particle than conventional GNRs, which enables detection of individual LGNRs in water and concentrations as low as 250 pM in the circulation of living mice. This translates to ~40 particles per imaging voxel in vivo. Unlike previous implementations of OCT spectral detection, the methods described herein adaptively compensate for depth and processing artifacts on a per sample basis. Collectively, these methods enable high-quality noninvasive contrast-enhanced imaging of OCT in living subjects, including detection of tumor microvasculature at twice the depth achievable with conventional OCT. Additionally, multiplexed detection of spectrally-distinct LGNRs was demonstrated to observe discrete patterns of lymphatic drainage and identify individual lymphangions and lymphatic valve functional states. These capabilities provide a powerful platform for molecular imaging and characterization of tissue noninvasively at cellular resolution, called MOZART.

  16. Adaptive Optics and Lucky Imager (AOLI): presentation and first light

    CERN Document Server

    Velasco, S; Mackay, C; Oscoz, A; King, D L; Crass, J; Díaz-Sánchez, A; Femenía, B; González-Escalera, V; Labadie, L; López, R L; Garrido, A Pérez; Puga, M; Rodríguez-Ramos, L F; Zuther, J

    2015-01-01

    In this paper we present the Adaptive Optics Lucky Imager (AOLI), a state-of-the-art instrument which makes use of two well proved techniques for extremely high spatial resolution with ground-based telescopes: Lucky Imaging (LI) and Adaptive Optics (AO). AOLI comprises an AO system, including a low order non-linear curvature wavefront sensor together with a 241 actuators deformable mirror, a science array of four 1024x1024 EMCCDs, allowing a 120x120 down to 36x36 arcseconds field of view, a calibration subsystem and a powerful LI software. Thanks to the revolutionary WFS, AOLI shall have the capability of using faint reference stars ({\\it I\\/} $\\sim$ 16.5-17.5), enabling it to be used over a much wider part of the sky than with common Shack-Hartmann AO systems. This instrument saw first light in September 2013 at William Herschel Telescope. Although the instrument was not complete, these commissioning demonstrated its feasibility, obtaining a FWHM for the best PSF of 0.151$\\pm$0.005 arcsec and a plate scale o...

  17. Batch fabrication of micro-optical sensing and imaging devices

    Science.gov (United States)

    Wippermann, F. C.; Reimann, A.; Oelschläger, A.; Dannberg, P.; Blöhbaum, F.; Koburg, C.; Köhler, T.

    2013-03-01

    As demonstrated in microelectronics, the batch fabrication based on the processing of wafers can lead to a significant reduction in prize as well as in size. This concept was adapted to the fabrication of imaging optics extensively used in mobile phone cameras relying on small pixels and low resolutions such as VGA. We report on batch fabricated customer specific opto-electronical modules used in machine sensing and automotive applications relying on large pixel sizes and non-conventional sensor characteristics. We specially focus on the lens mold mastering for the subsequent UV-replication since comparatively large sag heights of 250μm are required. Two technological approaches were applied, first, based on reflow of photoresist and, second, using diamond turning for the generation of a single lens mold and a subsequent step&repeat-process for array mastering on 8" wafers. Aspects of the optical design and simulation, the batch fabrication based on 8" wafers and characterization results are provided by the example of an f/1.1 opto-electronic sensor and an objective for a global shutter imager using 550x550 pixels with 3.6μm pitch.

  18. Blurred and noisy image pairs in parallel optics.

    Science.gov (United States)

    Klapp, Iftach; Sochen, Nir; Mendlovic, David

    2014-11-01

    In previous works we have shown that parallel optics (PO) architecture can be used to improve the system matrix condition, which results in improving its immunity to additive noise in the image restoration process. PO is composed of a "main" system and an "auxiliary" system. Previously, we suggested the "trajectories" method to realize PO. In that method, a required auxiliary system is composed from auxiliary optics with a pixel confined response, followed by signal processing. In this paper, we emphasize the important secondary effects of the trajectories method. We show that in such a system, where the postprocessing comes after the detection, the postprocessing acts as a noise filter, hence allowing us to work with noisy data in the auxiliary channel. Roughly speaking, the SNR of an imaging system depends on the numerical aperture (NA). It follows that the main system, which typically has a higher NA, also has a higher SNR. Hence in the PO system, the ratio between the NA values of the main and auxiliary systems is expected to dictate the gap between their SNR values. In this paper, we show that when the system is implemented by the trajectories method, this expectation is too conservative. It is shown that due to the noise filtering, the auxiliary system can be noisier than expected. This claim is proved analytically and verified and exemplified by using experimental measurements.

  19. Adaptive Optics Imaging Survey of Luminous Infrared Galaxies

    Energy Technology Data Exchange (ETDEWEB)

    Laag, E A; Canalizo, G; van Breugel, W; Gates, E L; de Vries, W; Stanford, S A

    2006-03-13

    We present high resolution imaging observations of a sample of previously unidentified far-infrared galaxies at z < 0.3. The objects were selected by cross-correlating the IRAS Faint Source Catalog with the VLA FIRST catalog and the HST Guide Star Catalog to allow for adaptive optics observations. We found two new ULIGs (with L{sub FIR} {ge} 10{sup 12} L{sub {circle_dot}}) and 19 new LIGs (with L{sub FIR} {ge} 10{sup 11} L{sub {circle_dot}}). Twenty of the galaxies in the sample were imaged with either the Lick or Keck adaptive optics systems in H or K{prime}. Galaxy morphologies were determined using the two dimensional fitting program GALFIT and the residuals examined to look for interesting structure. The morphologies reveal that at least 30% are involved in tidal interactions, with 20% being clear mergers. An additional 50% show signs of possible interaction. Line ratios were used to determine powering mechanism; of the 17 objects in the sample showing clear emission lines--four are active galactic nuclei and seven are starburst galaxies. The rest exhibit a combination of both phenomena.

  20. Vascular wall stress during intravascular optical coherence tomography imaging

    Science.gov (United States)

    Sun, Cuiru; Yang, Victor

    2015-03-01

    Biomechanical properties of arterial wall is crucial for understanding the changes in the cardiovascular system. Catheters are used during intravascular optical coherence tomography (IVOCT) imaging. The presence of a catheter alters the flow field, pressure distribution and frictional resistance to flow in an artery. In this paper, we first study the transmural stress distribution of the catheterized vessel. COMSOL (COMSOL 4.4) was used to simulate the blood flow induced deformation in a catheterized vessel. Blood is modeled as an incompressible Newtonian fluid. Stress distribution from an three-layer vascular model with an eccentric catheter are simulated, which provides a general idea about the distribution of the displacement and the stress. Optical coherence elastography techniques were then applied to porcine carotid artery samples to look at the deformation status of the vascular wall during saline or water injection. Preliminary simulation results show nonuniform stress distribution in the circumferential direction of the eccentrically catheterized vascular model. Three strain rate methods were tested for intravascular OCE application. The tissue Doppler method has the potential to be further developed to image the vascular wall biomechnical properties in vivo. Although results in this study are not validated quantitatively, the experiments and methods may be valuable for intravascular OCE studies, which may provide important information for cardiovascular disease prevention, diagnosis and treatment.

  1. From acoustic segmentation to language processing: evidence from optical imaging.

    Science.gov (United States)

    Obrig, Hellmuth; Rossi, Sonja; Telkemeyer, Silke; Wartenburger, Isabell

    2010-01-01

    During language acquisition in infancy and when learning a foreign language, the segmentation of the auditory stream into words and phrases is a complex process. Intuitively, learners use "anchors" to segment the acoustic speech stream into meaningful units like words and phrases. Regularities on a segmental (e.g., phonological) or suprasegmental (e.g., prosodic) level can provide such anchors. Regarding the neuronal processing of these two kinds of linguistic cues a left-hemispheric dominance for segmental and a right-hemispheric bias for suprasegmental information has been reported in adults. Though lateralization is common in a number of higher cognitive functions, its prominence in language may also be a key to understanding the rapid emergence of the language network in infants and the ease at which we master our language in adulthood. One question here is whether the hemispheric lateralization is driven by linguistic input per se or whether non-linguistic, especially acoustic factors, "guide" the lateralization process. Methodologically, functional magnetic resonance imaging provides unsurpassed anatomical detail for such an enquiry. However, instrumental noise, experimental constraints and interference with EEG assessment limit its applicability, pointedly in infants and also when investigating the link between auditory and linguistic processing. Optical methods have the potential to fill this gap. Here we review a number of recent studies using optical imaging to investigate hemispheric differences during segmentation and basic auditory feature analysis in language development.

  2. Deep subwavelength nanometric image reconstruction using Fourier domain optical normalization

    Institute of Scientific and Technical Information of China (English)

    Jing Qin; Richard M Silver; Bryan M Barnes; Hui Zhou; Ronald G Dixson; Mark-Alexander Henn

    2016-01-01

    Quantitative optical measurements of deep subwavelength,three-dimensional (3D),nanometric structures with sensitivity to sub-nanometer details address a ubiquitous measurement challenge.A Fourier domain normalization approach is used in the Fourier optical imaging code to simulate the full 3D scattered light field of nominally 15 nm-sized structures,accurately replicating the light field as a function of the focus position.Using the full 3D light field,nanometer scale details such as a 2 nm thin conformal oxide and nanometer topography are rigorously fitted for features less than one-thirtiethof the wavelength in size.The densely packed structures are positioned nearly an order of magnitude closer than the conventional Rayleigh resolution limit and can be measured with sub-nanometer parametric uncertainties.This approach enables a practical measurement sensitivity to size variations of only a few atoms in size using a high-throughput optical configuration with broad application in measuring nanometric structures and nanoelectronic devices.

  3. Concurrent multiscale imaging with magnetic resonance imaging and optical coherence tomography

    Science.gov (United States)

    Liang, Chia-Pin; Yang, Bo; Kim, Il Kyoon; Makris, George; Desai, Jaydev P.; Gullapalli, Rao P.; Chen, Yu

    2013-04-01

    We develop a novel platform based on a tele-operated robot to perform high-resolution optical coherence tomography (OCT) imaging under continuous large field-of-view magnetic resonance imaging (MRI) guidance. Intra-operative MRI (iMRI) is a promising guidance tool for high-precision surgery, but it may not have sufficient resolution or contrast to visualize certain small targets. To address these limitations, we develop an MRI-compatible OCT needle probe, which is capable of providing microscale tissue architecture in conjunction with macroscale MRI tissue morphology in real time. Coregistered MRI/OCT images on ex vivo chicken breast and human brain tissues demonstrate that the complementary imaging scales and contrast mechanisms have great potential to improve the efficiency and the accuracy of iMRI procedure.

  4. The CaSSIS imaging system: optical performance overview

    Science.gov (United States)

    Gambicorti, L.; Piazza, D.; Pommerol, A.; Roloff, V.; Gerber, M.; Ziethe, R.; El-Maarry, M. R.; Weigel, T.; Johnson, M.; Vernani, D.; Pelo, E.; Da Deppo, V.; Cremonese, G.; Ficai Veltroni, I.; Thomas, N.

    2016-07-01

    The Colour and Stereo Surface Imaging System (CaSSIS) is the high-resolution scientific imager on board the European Space Agency's (ESA) ExoMars Trace Gas Orbiter (TGO) which was launched on 14th March 2016 to Mars. CaSSIS will observe the Martian surface from an altitude of 400 km with an optical system based on a modified TMA telescope (Three Mirrors Anastigmatic configuration) with a 4th powered folding mirror. The camera EPD (Entrance Pupil Diameter) is 135 mm, and the expected focal length is 880 mm, giving an F# 6.5 in the wavelength range of 400- 1100 nm with a distortion designed to be less than 2%. CaSSIS will operate in a "push-frame" mode with a monolithic Filter Strip Assembly (FSA) produced by Optics Balzers Jena GmbH selecting 4 colour bands and integrated on the focal plane by Leonardo-Finmeccanica SpA (under TAS-I responsibility). The detector is a spare of the Simbio-Sys detector of the Italian Space Agency (ASI), developed by Raytheon Vision Systems. It is a 2kx2k hybrid Si-PIN array with a 10 μm pixel pitch. A scale of 4.6 m/px from the nominal orbit is foreseen to produce frames of 9.4 km × 47 km on the Martian surface. The University of Bern was in charge of the full instrument integration as well as the characterization of the focal plane and calibration of the entire instrument. The paper will present an overview of the CaSSIS telescope and FPA optical performance. The preliminary results of on-ground calibration and the first commissioning campaign (April 2016) will be described.

  5. A novel optical microscope for imaging large embryos and tissue volumes with sub-cellular resolution throughout

    Science.gov (United States)

    McConnell, Gail; Trägårdh, Johanna; Amor, Rumelo; Dempster, John; Reid, Es; Amos, William Bradshaw

    2016-01-01

    Current optical microscope objectives of low magnification have low numerical aperture and therefore have too little depth resolution and discrimination to perform well in confocal and nonlinear microscopy. This is a serious limitation in important areas, including the phenotypic screening of human genes in transgenic mice by study of embryos undergoing advanced organogenesis. We have built an optical lens system for 3D imaging of objects up to 6 mm wide and 3 mm thick with depth resolution of only a few microns instead of the tens of microns currently attained, allowing sub-cellular detail to be resolved throughout the volume. We present this lens, called the Mesolens, with performance data and images from biological specimens including confocal images of whole fixed and intact fluorescently-stained 12.5-day old mouse embryos. DOI: http://dx.doi.org/10.7554/eLife.18659.001 PMID:27661778

  6. Integrated multimodal endomicroscopy platform for simultaneous en face optical coherence and two-photon fluorescence imaging

    OpenAIRE

    Xi, Jiefeng; Chen, Yongping; Zhang, Yuying; Murari, Kartikeya; Li, Ming-Jun; Li, Xingde

    2012-01-01

    We report an all-fiber-optic scanning, multimodal endomicroscope capable of simultaneous optical coherence to-mography (OCT) and two-photon fluorescence (TPF) imaging. Both imaging modalities share the same miniature fiber-optic scanning endomicroscope, which consists of a double-clad fiber with a core operating in single mode at both the OCT (1310 nm) and two-photon excitation (1550 nm) wavelengths, a piezoelectric two-dimensional fiber-optic beam scanner, and a miniature aspherical compound...

  7. Mammographic quantitative image analysis and biologic image composition for breast lesion characterization and classification

    Energy Technology Data Exchange (ETDEWEB)

    Drukker, Karen, E-mail: kdrukker@uchicago.edu; Giger, Maryellen L.; Li, Hui [Department of Radiology, University of Chicago, Chicago, Illinois 60637 (United States); Duewer, Fred; Malkov, Serghei; Joe, Bonnie; Kerlikowske, Karla; Shepherd, John A. [Radiology Department, University of California, San Francisco, California 94143 (United States); Flowers, Chris I. [Department of Radiology, University of South Florida, Tampa, Florida 33612 (United States); Drukteinis, Jennifer S. [Department of Radiology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, Florida 33612 (United States)

    2014-03-15

    Purpose: To investigate whether biologic image composition of mammographic lesions can improve upon existing mammographic quantitative image analysis (QIA) in estimating the probability of malignancy. Methods: The study population consisted of 45 breast lesions imaged with dual-energy mammography prior to breast biopsy with final diagnosis resulting in 10 invasive ductal carcinomas, 5 ductal carcinomain situ, 11 fibroadenomas, and 19 other benign diagnoses. Analysis was threefold: (1) The raw low-energy mammographic images were analyzed with an established in-house QIA method, “QIA alone,” (2) the three-compartment breast (3CB) composition measure—derived from the dual-energy mammography—of water, lipid, and protein thickness were assessed, “3CB alone”, and (3) information from QIA and 3CB was combined, “QIA + 3CB.” Analysis was initiated from radiologist-indicated lesion centers and was otherwise fully automated. Steps of the QIA and 3CB methods were lesion segmentation, characterization, and subsequent classification for malignancy in leave-one-case-out cross-validation. Performance assessment included box plots, Bland–Altman plots, and Receiver Operating Characteristic (ROC) analysis. Results: The area under the ROC curve (AUC) for distinguishing between benign and malignant lesions (invasive and DCIS) was 0.81 (standard error 0.07) for the “QIA alone” method, 0.72 (0.07) for “3CB alone” method, and 0.86 (0.04) for “QIA+3CB” combined. The difference in AUC was 0.043 between “QIA + 3CB” and “QIA alone” but failed to reach statistical significance (95% confidence interval [–0.17 to + 0.26]). Conclusions: In this pilot study analyzing the new 3CB imaging modality, knowledge of the composition of breast lesions and their periphery appeared additive in combination with existing mammographic QIA methods for the distinction between different benign and malignant lesion types.

  8. Comparative evaluation of methylene blue and demeclocycline for enhancing optical contrast of gliomas in optical images

    Science.gov (United States)

    Wirth, Dennis; Snuderl, Matija; Curry, William; Yaroslavsky, Anna

    2014-09-01

    Contrast agents have shown to be useful in the detection of cancers. The goal of this study was to compare enhancement of brain cancer contrast using reflectance and fluorescence confocal imaging of two fluorophores, methylene blue (MB) and demeclocycline (DMN). MB absorbs light in the red spectral range and fluoresces in the near-infrared. It is safe for in vivo staining of human skin and breast tissue. However, its safety for staining human brain is questionable. Thus, DMN, which absorbs light in the violet spectral range and fluoresces between 470 and 570 nm, could provide a safer alternative to MB. Fresh human gliomas, obtained from surgeries, were cut in half and stained with aqueous solutions of MB and DMN, respectively. Stained tissues were imaged using multimodal confocal microscopy. Resulting reflectance and fluorescence optical images were compared with hematoxylin and eosin histopathology, processed from each imaged tissue. Results indicate that images of tissues stained with either stain exhibit comparable contrast and resolution of morphological detail. Further studies are required to establish the safety and efficacy of these contrast agents for use in human brain.

  9. Non-invasive Optical Molecular Imaging for Cancer Detection

    Science.gov (United States)

    Luo, Zhen

    Cancer is a leading cause of death worldwide. It remains the second most common cause of death in the US, accounting for nearly 1 out of every 4 deaths. Improved fundamental understanding of molecular processes and pathways resulting in cancer development has catalyzed a shift towards molecular analysis of cancer using imaging technologies. It is expected that the non-invasive or minimally invasive molecular imaging analysis of cancer can significantly aid in improving the early detection of cancer and will result in reduced mortality and morbidity associated with the disease. The central hypothesis of the proposed research is that non-invasive imaging of changes in metabolic activity of individual cells, and extracellular pH within a tissue will improve early stage detection of cancer. The specific goals of this research project were to: (a) develop novel optical imaging probes to image changes in choline metabolism and tissue pH as a function of progression of cancer using clinically isolated tissue biopsies; (b) correlate changes in tissue extracellular pH and metabolic activity of tissues as a function of disease state using clinically isolated tissue biopsies; (c) provide fundamental understanding of relationship between tumor hypoxia, acidification of the extracellular space and altered cellular metabolism with progression of cancer. Three novel molecular imaging probes were developed to detect changes in choline and glucose metabolism and extracellular pH in model systems and clinically isolated cells and biopsies. Glucose uptake and metabolism was measured using a fluorescence analog of glucose, 2-NBDG (2-[N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino]-2-deoxy-D-glucose), while choline metabolism was measured using a click chemistry analog of choline, propargyl choline, which can be in-situ labeled with a fluorophore Alexa-488 azide via a click chemistry reaction. Extracellular pH in tissue were measured by Alexa-647 labeled pHLIP (pH low insertion peptide

  10. Multimodal optical imaging system for in vivo investigation of cerebral oxygen delivery and energy metabolism

    OpenAIRE

    Yaseen, Mohammad A.; Vivek J Srinivasan; Gorczynska, Iwona; Fujimoto, James G.; Boas, David A.; Sakadžić, Sava

    2015-01-01

    Improving our understanding of brain function requires novel tools to observe multiple physiological parameters with high resolution in vivo. We have developed a multimodal imaging system for investigating multiple facets of cerebral blood flow and metabolism in small animals. The system was custom designed and features multiple optical imaging capabilities, including 2-photon and confocal lifetime microscopy, optical coherence tomography, laser speckle imaging, and optical intrinsic signal i...

  11. Study of optical techniques for the Ames unitary wind tunnel: Digital image processing, part 6

    Science.gov (United States)

    Lee, George

    1993-01-01

    A survey of digital image processing techniques and processing systems for aerodynamic images has been conducted. These images covered many types of flows and were generated by many types of flow diagnostics. These include laser vapor screens, infrared cameras, laser holographic interferometry, Schlieren, and luminescent paints. Some general digital image processing systems, imaging networks, optical sensors, and image computing chips were briefly reviewed. Possible digital imaging network systems for the Ames Unitary Wind Tunnel were explored.

  12. “Lucky Averaging”: Quality improvement on Adaptive Optics Scanning Laser Ophthalmoscope Images

    OpenAIRE

    Huang, Gang; Zhong, Zhangyi; Zou, Weiyao; Burns, Stephen A.

    2011-01-01

    Adaptive optics(AO) has greatly improved retinal image resolution. However, even with AO, temporal and spatial variations in image quality still occur due to wavefront fluctuations, intra-frame focus shifts and other factors. As a result, aligning and averaging images can produce a mean image that has lower resolution or contrast than the best images within a sequence. To address this, we propose an image post-processing scheme called “lucky averaging”, analogous to lucky imaging (Fried, 1978...

  13. Development of Optical Molecular Imaging System for the Acquisition of Bioluminescence Signals from Small Animals

    International Nuclear Information System (INIS)

    Optical imaging is providing great advance and improvement in genetic and molecular imaging of animals and humans. Optical imaging system consists of optical imaging devices, which carry out major function for monitoring, tracing, and imaging in most of molecular in-vivo researches. In bio-luminescent imaging, small animals containing luciferase gene locally irradiate light, and emitted photons transmitted through skin of the small animals are imaged by using a high sensitive charged coupled device (CCD) camera. In this paper, we introduced optical imaging system for the image acquisition of bio-luminescent signals emitted from small animals. In the system, Nikon lens and four LED light sources were mounted at the inside of a dark box. A cooled CCD camera equipped with a control module was used. We tested the performance of the optical imaging system using effendorf tube and light emitting bacteria which injected intravenously into CT26 tumor bearing nude mouse. The performance of implemented optical imaging system for bio-luminescence imaging was demonstrated and the feasibility of the system in small animal imaging application was proved. We anticipate this system could be a useful tool for the molecular imaging of small animals adaptable for various experimental conditions in future

  14. Preparation, theory, and biological applications of highly luminescent cadmium selenide/zinc sulfide quantum dots in optical and electron microscopy

    Science.gov (United States)

    Bouwer, James Christopher

    This dissertation describes the preparation, theory, and applications of ZnS overcoated CdSe (core) quantum dots for applications as fluorescent probes in optical microscopy and as electron energy loss spectroscopy (EELS) probes in electron microscopy, with applications to the biological sciences. The dissertation begins with a brief overview of quantum dots and their history. Next, a brief overview of the necessary semiconductor theory is discussed including the origin of the band gap, the origin of holes, the concepts of phonons, and trap states. Then, the role of the confinement potential in the quantum dot fluorescent spectrum is discussed in the context of the 3-dimensional spherical well. Included in this discussion is the role of excitonic electron-hole bound states. To provide a complete document useful to anyone who wishes to continue work along these lines, included is a methods section which describes the complete process of synthesis of the CdSe cores, overcoating the cores with ZnS, size selection of nanocrystals, water solubilization, and protein conjugation. The methods used in live cell labeling are included as well. In the section that follows, a discussion of the mathematical methods of image correlation spectroscopy (ICS) for extracting dynamic constants such as flow rates and diffusion constants from time lapse optical image data is discussed in the context of quantum dot fluorescent probes. Dynamic constants were obtained using live NIH3T3 mouse fibroblast cells labeled with IgG-anti-EGF conjugated quantum dots. These same cells were then fixed, imbedded in resin, sectioned to 100nm thick sections and imaged under the electron microscope. The electron dense cadmium selinide provides the contrast necessary to perform direct imaging of EGF receptor sites. In order to improve the data and move toward multi-channel imaging in the electron microscope, EELS spectroscopy and elemental mapping of quantum dots was performed. The theory along with a

  15. Polarization resolved imaging with a reflection near-field optical microscope

    DEFF Research Database (Denmark)

    Bozhevolnyi, Sergey I.; Xiao, Mufei; Hvam, Jørn Märcher

    1999-01-01

    Using a rigorous microscopic point-dipole description of probe-sample interactions, we study imaging with a reflection scanning near-field optical microscope. Optical content, topographical artifacts, sensitivity window-i.e., the scale on which near-field optical images represent mainly optical...... configuration is preferable to the cross-linear one, since it ensures more isotropic (in the surface plane) near-field imaging of surface features. The numerical results are supported with experimental near-field images obtained by using a reflection microscope with an uncoated fiber tip....

  16. Fiber optic spectroscopic digital imaging sensor and method for flame properties monitoring

    Energy Technology Data Exchange (ETDEWEB)

    Zelepouga, Serguei A. (Hoffman Estates, IL); Rue, David M. (Chicago, IL); Saveliev, Alexei V. (Chicago, IL)

    2011-03-15

    A system for real-time monitoring of flame properties in combustors and gasifiers which includes an imaging fiber optic bundle having a light receiving end and a light output end and a spectroscopic imaging system operably connected with the light output end of the imaging fiber optic bundle. Focusing of the light received by the light receiving end of the imaging fiber optic bundle by a wall disposed between the light receiving end of the fiber optic bundle and a light source, which wall forms a pinhole opening aligned with the light receiving end.

  17. A survey on object detection in optical remote sensing images

    Science.gov (United States)

    Cheng, Gong; Han, Junwei

    2016-07-01

    Object detection in optical remote sensing images, being a fundamental but challenging problem in the field of aerial and satellite image analysis, plays an important role for a wide range of applications and is receiving significant attention in recent years. While enormous methods exist, a deep review of the literature concerning generic object detection is still lacking. This paper aims to provide a review of the recent progress in this field. Different from several previously published surveys that focus on a specific object class such as building and road, we concentrate on more generic object categories including, but are not limited to, road, building, tree, vehicle, ship, airport, urban-area. Covering about 270 publications we survey (1) template matching-based object detection methods, (2) knowledge-based object detection methods, (3) object-based image analysis (OBIA)-based object detection methods, (4) machine learning-based object detection methods, and (5) five publicly available datasets and three standard evaluation metrics. We also discuss the challenges of current studies and propose two promising research directions, namely deep learning-based feature representation and weakly supervised learning-based geospatial object detection. It is our hope that this survey will be beneficial for the researchers to have better understanding of this research field.

  18. Surface imaging of metallic material fractures using optical coherence tomography.

    Science.gov (United States)

    Hutiu, Gheorghe; Duma, Virgil-Florin; Demian, Dorin; Bradu, Adrian; Podoleanu, Adrian Gh

    2014-09-10

    We demonstrate the capability of optical coherence tomography (OCT) to perform topography of metallic surfaces after being subjected to ductile or brittle fracturing. Two steel samples, OL 37 and OL 52, and an antifriction Sn-Sb-Cu alloy were analyzed. Using an in-house-built swept source OCT system, height profiles were generated for the surfaces of the two samples. Based on such profiles, it can be concluded that the first two samples were subjected to ductile fracture, while the third one was subjected to brittle fracture. The OCT potential for assessing the surface state of materials after fracture was evaluated by comparing OCT images with images generated using an established method for such investigations, scanning electron microscopy (SEM). Analysis of cause of fracture is essential in response to damage of machinery parts during various accidents. Currently the analysis is performed using SEM, on samples removed from the metallic parts, while OCT would allow in situ imaging using mobile units. To the best of our knowledge, this is the first time that the OCT capability to replace SEM has been demonstrated. SEM is a more costly and time-consuming method to use in the investigation of surfaces of microstructures of metallic materials. PMID:25321671

  19. High-contrast self-imaging with ordered optical elements

    CERN Document Server

    Naqavi, Ali; Rossi, Markus

    2016-01-01

    Creating arbitrary light patterns finds applications in various domains including lithography, beam shaping, metrology, sensing and imaging. We study the formation of high-contrast light patterns that are obtained by transmission through an ordered optical element based on self-imaging.By applying the phase-space method, we explain phenomena such as the Talbot and the angular Talbot effects. We show that the image contrast is maximum when the source is either a plane wave or a point source, and it has a minimum for a source with finite spatial extent. We compare these regimes and address some of their fundamental differences. Specifically, we prove that increasing the source divergence reduces the contrast for the plane wave illumination but increases it for the point source. Also, we show that to achieve high contrast with a point source, tuning the source size and its distance to the element is crucial.We furthermore indicate and explore the possibility of realizing highly complex light patterns by using a ...

  20. Micron narrowband adaptive optics imaging in the arches cluster

    CERN Document Server

    Blum, R D; Pasquali, A; Heydari-Malayeri, M; Conti, P S; Schmutz, W

    2001-01-01

    Canada-France-Hawaii-Telescope adaptive optics bonnette images through narrow-band filters in the $K-$band are presented for the Arches cluster. Continuum fluxes, line fluxes, and equivalent widths are derived from high angular resolution images, some near diffraction limited, for the well known massive stars in the Arches cluster. Images were obtained in the lines of \\ion{He}{1} 2.06 \\mic, \\ion{H}{1} Br$\\gamma$ (2.17 \\mic), and \\ion{He}{2} 2.19 \\mic as well as continuum positions at 2.03 \\mic, 2.14 \\mic, and 2.26 \\mic. In addition, fluxes are presented for \\ion{H}{1} P$\\alpha$ (1.87 \\mic) and a nearby continuum position (1.90 \\mic) from Hubble Space Telescope archival data. The 2 \\mic and P$\\alpha$ data reveal two new emission-line stars and three fainter candidate emission-line objects. Indications for a spectral change of one object between earlier observations in 1992/1993 and our data from 1999 are found. The ratio of \\ion{He}{2} 2.19 \\mic to Br$\\gamma$ emission exhibits a narrow distribution among the s...