Worldwide QA networks for radiotherapy dosimetry

International Nuclear Information System (INIS)

Izewska, J.; Svensson, H.; Ibbott, G.

2002-01-01

A number of national or international organizations have developed various types and levels of external audits for radiotherapy dosimetry. There are three major programmes who make available external audits, based on mailed TLD (thermoluminescent dosimetry), to local radiotherapy centres on a regular basis. These are the IAEA/WHO TLD postal dose audit service operating worldwide, the European Society for Therapeutic Radiology and Oncology (ESTRO) system, EQUAL, in European Union (EU) and the Radiological Physics Center (RPC) in North America. The IAEA, in collaboration with WHO, was the first organization to initiate TLD audits on an international scale in 1969, using mailed system, and has a well-established programme for providing dose verification in reference conditions. Over 32 years, the IAEA/WHO TLD audit service has checked the calibration of more than 4300 radiotherapy beams in about 1200 hospitals world-wide. Only 74% of those hospitals who receive TLDs for the first time have results with deviation between measured and stated dose within acceptance limits of ±5%, while approximately 88% of the users that have benefited from a previous TLD audit are successful. EQUAL, an audit programme set up in 1998 by ESTRO, involves the verification of output for high energy photon and electron beams, and the audit of beam parameters in non-reference conditions. More than 300 beams are checked each year, mainly in the countries of EU, covering approximately 500 hospitals. The results show that although 98% of the beam calibrations are within the tolerance level of ±5%, a second check was required in 10% of the participating centres, because a deviation larger than ±5% was observed in at least one of the beam parameters in non-reference conditions. EQUAL has been linked to another European network (EC network) which tested the audit methodology prior to its application. The RPC has been funded continuously since 1968 to monitor radiation therapy dose delivery at

Direct biological dosimetry in Chernobyl clear-up workers

International Nuclear Information System (INIS)

Maznik, N.A.; Vinnikov, V.A.; Rozdil'ski, S.I.

1999-01-01

Full text: In cases of large-scale radiological accidents like Chernobyl (1986) the estimation of somatic risk to exposed populations became a problem due to lack of direct physical dosimetry data. In such conditions the necessarily information can be obtained from biological dosimetry, firstly by chromosomal aberrations analysis in human peripheral blood lymphocytes. Conventional cytogenetic assay have been carried out in 130 persons recruited as clean-up workers ('liquidators') to the Chernobyl zone in 1986-87 yrs. Blood sampling was performed during 1 year post-irradiation, in 100 persons p to 0.5 year. The aberrations of choice for biological dosimetry were unstable chromosome exchanges (dicentrics and centric rings with accompanying acentric fragments). The dose calculations have been done using the linear term of the dose-response curve built with acute gamma-irradiation of blood in dose range up to 1 Gy. The distributions of biological doses were investigated in groups of liquidators with doses in documents ranging 17-140, 175-230, 250, 260-365, 440-1030 mSv and in the group of non-monitored persons. The weak correlation between monitored individual doses and biological doses was shown; the biological and physical dose distribution peculiarity in monitored groups is discussed. The distribution of individual aberration frequencies and the average yield of chromosomal exchanges in monitored and non-monitored liquidators were identical. The common cohort analysis (monitored and non-monitored persons) showed that the individual aberration yields distribution among liquidators was strictly randomised in accordance with Poissonian statistics. The cytogenetic dose estimations obtained can be of great value for somatic effects risk assessment in post-Chernobyl cohorts

DRDC Ottawa working standard for biological dosimetry

International Nuclear Information System (INIS)

Segura, T.M.; Prud'homme-Lalonde, L.; Thorleifson, E.; Lachapelle, S.; Mullins, D.; Qutob, S.; Wilkinson, D.

2005-07-01

This Standard provides quality assurance, quality control, and evaluation of the performance criteria for the purpose of accreditation of the Radiation Biology laboratory at Defence Research and Development Canada - Ottawa (DRDC Ottawa) using biological dosimetry to predict radiation exposure doses. The International Standard (ISO 19238) and the International Atomic Energy Association (IAEA) Technical Report Series No. 405 are used as guiding documents in preparation of this working document specific to the DRDC Ottawa Radiation Biology Laboratory. This Standard addresses: 1. The confidentiality of personal information, for the customer and the service laboratory; 2. The laboratory safety requirements; 3. The calibration sources and calibration dose ranges useful for establishing the reference dose-effect curves allowing the dose estimation from chromosome aberration frequency, and the minimum detection levels; 4. Transportation criteria for shipping of test samples to the laboratory; 5. Preparation of samples for analysis; 6. The scoring procedure for unstable chromosome aberrations used for biological dosimetry; 7. The criteria for converting a measured aberration frequency into an estimate of absorbed dose; 8. The reporting of results; 9. The quality assurance and quality control plan for the laboratory; and 10. Informative annexes containing examples of a questionnaire, instructions for customers, a data sheet for recording aberrations, a sample report and other supportive documents. (author)

DRDC Ottawa working standard for biological dosimetry

Energy Technology Data Exchange (ETDEWEB)

Segura, T M; Prud' homme-Lalonde, L [Defence Research and Development Canada, Ottawa, Ontario (Canada); Thorleifson, E [Health Canada, Gatineau, Quebec (Canada); Lachapelle, S; Mullins, D [JERA Consulting (Canada); Qutob, S [Health Canada, Gatineau, Quebec (Canada); Wilkinson, D

2005-07-15

This Standard provides quality assurance, quality control, and evaluation of the performance criteria for the purpose of accreditation of the Radiation Biology laboratory at Defence Research and Development Canada - Ottawa (DRDC Ottawa) using biological dosimetry to predict radiation exposure doses. The International Standard (ISO 19238) and the International Atomic Energy Association (IAEA) Technical Report Series No. 405 are used as guiding documents in preparation of this working document specific to the DRDC Ottawa Radiation Biology Laboratory. This Standard addresses: 1. The confidentiality of personal information, for the customer and the service laboratory; 2. The laboratory safety requirements; 3. The calibration sources and calibration dose ranges useful for establishing the reference dose-effect curves allowing the dose estimation from chromosome aberration frequency, and the minimum detection levels; 4. Transportation criteria for shipping of test samples to the laboratory; 5. Preparation of samples for analysis; 6. The scoring procedure for unstable chromosome aberrations used for biological dosimetry; 7. The criteria for converting a measured aberration frequency into an estimate of absorbed dose; 8. The reporting of results; 9. The quality assurance and quality control plan for the laboratory; and 10. Informative annexes containing examples of a questionnaire, instructions for customers, a data sheet for recording aberrations, a sample report and other supportive documents. (author)

Activities developed by the biological dosimetry laboratory of the Autoridad Regulatoria Nuclear - ARN of Argentina

International Nuclear Information System (INIS)

Radl, A.; Sapienza, C.E.; Taja, M.R.; Bubniak, R.; Deminge, M.; Di Giorgio, M.

2013-01-01

Biological dosimetry (DB) allows to estimate doses absorbed in individuals exposed to ionizing radiation through the quantification of stable and unstable chromosome aberrations (SCA and UCA). The frequency of these aberrations is referred to a calibration dose response curve (in vitro) to determine the doses of the individual to the whole body. The DB is a necessary support for programs of national radiation protection and response systems in nuclear or radiological emergencies in the event of accidental or incidental, single overexposure or large scale. In this context the Laboratory of Dosimetry Biological (LDB) of the Authority Regulatory Nuclear (ARN) Argentina develops and applies different dosimeters cytogenetic from four decades ago. These dosimeters provide a fact more within the whole of the information necessary for an accidental, complementing the physical and clinical dosimetry exposure assessment. The most widely used in the DB biodosimetric method is the quantification of SCA (dicentrics and rings Central) from a sample of venous blood. The LDB is accredited for the trial, under rules IRAM 301: 2005 (ISO / IEC 17025: 2005) and ISO 19238:2004. Test applies to the immediate dosimetry evaluation of acute exposures, all or a large part of the body in the range 0,1-5 Gy. In this context the LDB is part of the Latin American network of DB (LBDNet), BioDoseNet-who and response system in radiological emergencies and nuclear IAEA-RANET, being enabled to summon the LBDNet if necessary

Cytogenetic biological dosimetry. Dose estimative in accidental exposure

International Nuclear Information System (INIS)

Santos, O.R. dos; Campos, I.M.A. de.

1988-01-01

The methodology of cytogenetic biological dosimetry is studied. The application in estimation of dose in five cases of accidental exposure is reported. An hematological study and culture of lymphocytes is presented. (M.A.C.) [pt

The UK radiotherapy dosimetry audit network

International Nuclear Information System (INIS)

Thwaites, D.I.

2002-01-01

Full text: Radiotherapy dosimetry intercomparison in the UK has been carried out in limited studies since the 1960s. However the first national dosimetry intercomparison involving all radiotherapy centres was conducted in the late 1980s. This was based on visits to each centre, using ionisation chamber dosimetry. It audited megavoltage photon beam calibration and other single field parameters. It also measured doses in a three-field 'treatment' in a trapezoidal phantom constructed from epoxy-resin water-equivalent material and compared these to locally planned doses. This included off-axis points, oblique incidence, inhomogeneities, etc. The study found mean measured beam calibration doses close to stated values (ratio 1.003), with a standard deviation (sd) of the distribution of 1.5% and 97% of doses within the pro-set 3% tolerance. For the planned multi-field irradiations, mean dose ratios (measured/stated) were 1.01 (sd 3%, 90% of results within 5%). A number of discrepancies were identified, leading to improved practice. A follow up study (mid-1990s) for electron beam audit also repeated the megavoltage photon calibration audit. For photons, an improvement was noted (mean ratio 1.003, sd 1.0%, 100% within 3%), whilst for electron beams, the mean ratio of measured/stated dose was 0.994 (sd 1.8%, 94% within 3%, 99% within 5%). In parallel with - and growing out of - this, a national audit network began to develop in 1991/2. It utilised similar methodology to the intercomparison and a network approach to allow parallel developments of the scope of the system. The network has eight regional groups, each with up to 10 radiotherapy centres, serving average populations of 7-8 million. Each group organises audits of its own centres and has developed at its own pace. Most have piloted methodology, phantoms, etc. for new audits which can then be used by other groups. All 65 UK centres are included. The network is co-ordinated by an IPEM Steering Committee (current chair

Biological dosimetry study in differentiated thyroid carcinoma patients treated with 131Iodine

International Nuclear Information System (INIS)

Vallerga, Maria Belen

2008-11-01

Biological Dosimetry allows individual dose assessments based on the effect produced by ionizing radiation on a given biological parameter. The current biological endpoint being scored is chromosomal aberrations, relying on a lymphocytes culture from the patient's blood. The measured yield of chromosome aberrations is referred to a calibration curve obtaining the whole body dose. Different scenarios of overexposure can be taken into account by modifying the calculations leading to the dose estimate. Differentiated Thyroid Carcinoma patients undergo thyroidectomy followed by internal radiotherapy with 131 I. The treatment's success entails the delivery of a lethal dose to the tumour within the maximum tolerable dose to a critical organ (blood doses over 2 Gy could lead to bone marrow depression). Currently, there is no established agreement for the selection of radioiodine dosage. Historically, the empiric approach, based on clinical and biochemical data, has been recommended. Nevertheless, this method may not be associated with optimal outcomes. On the other hand, the dosimetric approach attempts to determine the maximum allowable activity to be administered, establishing its biokinetics by a diagnostic 131 I study. The methodology may be modified to further individualized treatment, however it requires validation. Biological dosimetry provides an independent measure of radiotherapy effect, as such it might aid in the validation process. Nonetheless, biological dosimetry has traditionally been applied in cases of external and accidental overexposure to ionizing radiation. Accordingly, it is mandatory to assess its value in medical internal incorporations (main objective of the present study). The applied treatment strategy comprises whole body dose assessment by biological and internal dosimetry in order to administer a personalized therapeutic activity. Overall, 20 patients with differentiated thyroid carcinoma were included in the study. For biological dosimetry

Dosimetry and biological effects of fast neutrons

International Nuclear Information System (INIS)

Zoetelief, J.

1981-01-01

This thesis contains studies on two types of cellular damage: cell reproductive death and chromosome aberrations induced by irradiation with X rays, gamma rays and fast neutrons of different energies. A prerequisite for the performance of radiobiological experiments is the determination of the absorbed dose with a sufficient degree of accuracy and precision. Basic concepts of energy deposition by ionizing radiation and practical aspects of neutron dosimetry for biomedical purposes are discussed. Information on the relative neutron sensitivity of GM counters and on the effective point of measurement of ionization chambers for dosimetry of neutron and photon beams under free-in-air conditions and inside phantoms which are used to simulate the biological objects is presented. Different methods for neutron dosimetry are compared and the experimental techniques used for the investigations of cell reproductive death and chromosome aberrations induced by ionizing radiation of different qualities are presented. Dose-effect relations for induction cell inactivation and chromsome aberrations in three cultured cell lines for different radiation qualities are presented. (Auth.)

Towards Establishing Capacity for Biological Dosimetry at Ghana Atomic Energy Commission.

Science.gov (United States)

Achel, Daniel Gyingiri; Achoribo, Elom; Agbenyegah, Sandra; Adaboro, Rudolph M; Donkor, Shadrack; Adu-Bobi, Nana A K; Agyekum, Akwasi A; Akuamoa, Felicia; Tagoe, Samuel N; Kyei, Kofi A; Yarney, Joel; Serafin, Antonio; Akudugu, John M

2016-01-01

The aim of this study was not only to obtain basic technical prerequisites for the establishment of capacity of biological dosimetry at the Ghana Atomic Energy Commission (GAEC) but also to stimulate interest in biological dosimetry research in Ghana and Sub-Saharan Africa. Peripheral blood from four healthy donors was exposed to different doses (0-6 Gy) of gamma rays from a radiotherapy machine and lymphocytes were subsequently stimulated, cultured, and processed according to standard protocols for 48-50 h. Processed cells were analyzed for the frequencies of dicentric and centric ring chromosomes. Radiation dose delivered to the experimental model was verified using GafChromic® EBT films in parallel experiments. Basic technical prerequisites for the establishment of capacity of biological dosimetry in the GAEC have been realized and expertise in the dicentric chromosome assay consolidated. We successfully obtained preliminary cytogenetic data for a dose-response relationship of the irradiated blood lymphocytes. The data strongly indicate the existence of significant linear (α) and quadratic (β) components and are consistent with those published for the production of chromosome aberrations in comparable absorbed dose ranges.

Metabolomics in Radiation-Induced Biological Dosimetry: A Mini-Review and a Polyamine Study

Directory of Open Access Journals (Sweden)

Changhyun Roh

2018-05-01

Full Text Available In this study, we elucidate that polyamine metabolite is a powerful biomarker to study post-radiation changes. Metabolomics in radiation biodosimetry, the application of a metabolomics analysis to the field of radiobiology, promises to increase the understanding of biological responses by ionizing radiation (IR. Radiation exposure triggers a complex network of molecular and cellular responses that impacts metabolic processes and alters the levels of metabolites. Such metabolites have potential as biomarkers for radiation dosimetry. Among metabolites, polyamine is one of many potential biomarkers to estimate radiation response. In addition, this review provides an opportunity for the understanding of a radiation metabolomics in biodosimetry and a polyamine case study.

Biological dosimetry: chromosomal aberration analysis for dose assessment

International Nuclear Information System (INIS)

1986-01-01

In view of the growing importance of chromosomal aberration analysis as a biological dosimeter, the present report provides a concise summary of the scientific background of the subject and a comprehensive source of information at the technical level. After a review of the basic principles of radiation dosimetry and radiation biology basic information on the biology of lymphocytes, the structure of chromosomes and the classification of chromosomal aberrations are presented. This is followed by a presentation of techniques for collecting blood, storing, transporting, culturing, making chromosomal preparations and scaring of aberrations. The physical and statistical parameters involved in dose assessment are discussed and examples of actual dose assessments taken from the scientific literature are given

About the factors distorting biological dosimetry results

International Nuclear Information System (INIS)

Mosseh, I.B.

1999-01-01

The row of chemical substances that have not mutagenic effect can strengthen ionising radiation induced cytogenetic effects. For example nitrite sodium and nitrate sodium reinforce mutagenic action of radiation and cause sensitized effect although they aren't mutagens. Presence of residual amount of herbicides in food products can have influence at level of aberration in human cells. It was investigated the influence of herbicide zencor at mutagenic action of radiation. This substance has weak mutagenic activity. In the case of combined action of zencor with irradiation antagonistic effect was observed. Mutation rate turns out to be lower than expected summary value. At the same time many foods products (tea, coffee, cacao, chocolate etc., which contain melanin) are antimutagens and can also change the frequency of radiation induced mutations. Taking of medicine distort the results of dose estimation. The frequency of chromosomal aberrations in blood lymphocytes after acute irradiation is considered to be adequate method of biological dosimetry. In the case of chronic irradiation this analysis becomes complicated with such processes as adaptation (selection and proliferation of cells with more radioresistant genotype) and the origin of genetic un stability which leads to higher radiosensitivity. The estimation of the level of point mutations is the most precise method of biological dosimetry because their existence is less exposed to modifications

Artificial neural networks in neutron dosimetry

Energy Technology Data Exchange (ETDEWEB)

Vega C, H.R.; Hernandez D, V.M.; Manzanares A, E.; Mercado, G.A.; Perales M, W.A.; Robles R, J.A. [Unidades Academicas de Estudios Nucleares, UAZ, A.P. 336, 98000 Zacatecas (Mexico); Gallego, E.; Lorente, A. [Depto. de Ingenieria Nuclear, Universidad Politecnica de Madrid, (Spain)

2005-07-01

An artificial neural network has been designed to obtain the neutron doses using only the Bonner spheres spectrometer's count rates. Ambient, personal and effective neutron doses were included. 187 neutron spectra were utilized to calculate the Bonner count rates and the neutron doses. The spectra were transformed from lethargy to energy distribution and were re-binned to 31 energy groups using the MCNP 4C code. Re-binned spectra, UTA4 response matrix and fluence-to-dose coefficients were used to calculate the count rates in Bonner spheres spectrometer and the doses. Count rates were used as input and the respective doses were used as output during neural network training. Training and testing was carried out in Mat lab environment. The artificial neural network performance was evaluated using the {chi}{sup 2}- test, where the original and calculated doses were compared. The use of Artificial Neural Networks in neutron dosimetry is an alternative procedure that overcomes the drawbacks associated in this ill-conditioned problem. (Author)

Artificial neural networks in neutron dosimetry

International Nuclear Information System (INIS)

Vega C, H.R.; Hernandez D, V.M.; Manzanares A, E.; Mercado, G.A.; Perales M, W.A.; Robles R, J.A.; Gallego, E.; Lorente, A.

2005-01-01

An artificial neural network has been designed to obtain the neutron doses using only the Bonner spheres spectrometer's count rates. Ambient, personal and effective neutron doses were included. 187 neutron spectra were utilized to calculate the Bonner count rates and the neutron doses. The spectra were transformed from lethargy to energy distribution and were re-binned to 31 energy groups using the MCNP 4C code. Re-binned spectra, UTA4 response matrix and fluence-to-dose coefficients were used to calculate the count rates in Bonner spheres spectrometer and the doses. Count rates were used as input and the respective doses were used as output during neural network training. Training and testing was carried out in Mat lab environment. The artificial neural network performance was evaluated using the χ 2 - test, where the original and calculated doses were compared. The use of Artificial Neural Networks in neutron dosimetry is an alternative procedure that overcomes the drawbacks associated in this ill-conditioned problem. (Author)

Dosimetry

International Nuclear Information System (INIS)

Rezende, D.A.O. de

1976-01-01

The fundamental units of dosimetry are defined, such as exposure rate, absorbed dose and equivalent dose. A table is given of relative biological effectiveness values for the different types of radiation. The relation between the roentgen and rad units is calculated and the concepts of physical half-life, biological half-life and effective half-life are discussed. Referring to internal dosimetry, a mathematical treatment is given to β particle-and γ radiation dosimetry. The absorbed dose is calculated and a practical example is given of the calculation of the exposure and of the dose rate for a gama source [pt

Biological dosimetry for mixed gamma-neutron field

International Nuclear Information System (INIS)

Brandao, J.O.C.; Santos, J.A.L.; Souza, P.L.G.; Lima, F.F.; Vilela, E.C.; Calixto, M.S.; Santos, N.

2011-01-01

There is increasing concern about airline crew members (about one million worldwide) exposed to measurable neutrons doses. Historically, cytogenetic biodosimetry assays have been based on quantifying asymmetrical chromosome alterations (dicentrics, centric rings and acentric fragments) in mitogen-stimulated T-lymphocytes in their first mitosis after radiation exposure. Increased levels of chromosome damage in peripheral blood lymphocytes are a sensitive indicator of radiation exposure and they are routinely exploited for assessing radiation absorbed dose after accidental or occupational exposure. Since radiological accidents are not common, not all nations feel that it is economically justified to maintain biodosimetry competence. However, dependable access to biological dosimetry capabilities is completely critical in event of an accident. In this paper the dose-response curve was measured for the induction of chromosomal alterations in peripheral blood lymphocytes after chronic exposure in vitro to mixed gamma-neutron field. Blood was obtained from one healthy donor and exposed to two mixed gamma-neutron field from sources 241 AmBe (20 Ci) at the Neutron Calibration Laboratory (NCL - CRCN/NE - PE - Brazil). The evaluated absorbed doses were 0.2 Gy; 1.0 Gy and 2.5 Gy. The dicentric chromosomes were observed at metaphase, following colcemide accumulation and 1000 well-spread metaphases were analyzed for the presence of dicentrics by two experts after painted by giemsa 5%. The preliminary results showed a linear dependence between radiations absorbed dose and dicentric chromosomes frequencies. Dose-response curve described in this paper will contribute to the construction of calibration curve that will be used in our laboratory for biological dosimetry. (author)

Biological and clinical dosimetry, July 1, 1964 to December 31, 1984. Final report

International Nuclear Information System (INIS)

Laughlin, J.S.; Zeitz, L.

1986-01-01

The goal was to develop systems for the determination of absorbed dose in biological research and clinical applications. The primary method under study is the local absorbed dose calorimeter. In addition, secondary dosimetric systems such as ionization chambers, chemical dosimeters and thermoluminescent dosimeters (TLD) are being developed and applied to provide an absolute basis for the evaluation and comparison of experiments, treatments and other procedures using radiation. In keeping with these objectives this project has accomplished significant advances in the following areas: (1) local absorbed dose calorimetry; (2) neutron dosimetry; (3) dosimetry of ultra-high intensity radiation sources; (4) solid state detector and germanium gamma camera program; (5) dosimetry for brachytherapy; and (6) ''non-isolated sensor'' calorimeters

Development of radiation biological dosimetry

International Nuclear Information System (INIS)

Cho, Chul Koo; Kim, Tae Hwan; Lee, Yun Sil; Son, Young Sook; Kim, Soo Kwan; Jang, Won Suk; Le, Sun Joo; Jee, Young Heun; Jung, Woo Jung

1999-04-01

Up until now, only a few methods have been developed for radiation biological dosimetry such as conventional chromosome aberration and micronucleus in peripheral blood cell. However, because these methods not only can be estimated by the expert, but also have a little limitation due to need high technique and many times in the case of radiation accident, it is very difficult to evaluate the absorbed dose of victims. Therefore, we should develop effective, easy, simple and rapid biodosimetry and its guideline (triage) to be able to be treated the victims as fast as possible. We established the premature chromosome condensation assay and apoptotic fragment assay which was the significant relationship between dose and cell damages to evaluate the irradiation dose as correct and rapid as possible using lymphocytes and crypt cells, and compared with conventional chromosome aberration assay and micronuclei assay

Development of radiation biological dosimetry

Energy Technology Data Exchange (ETDEWEB)

Cho, Chul Koo; Kim, Tae Hwan; Lee, Yun Sil; Son, Young Sook; Kim, Soo Kwan; Jang, Won Suk; Le, Sun Joo; Jee, Young Heun; Jung, Woo Jung

1999-04-01

Up until now, only a few methods have been developed for radiation biological dosimetry such as conventional chromosome aberration and micronucleus in peripheral blood cell. However, because these methods not only can be estimated by the expert, but also have a little limitation due to need high technique and many times in the case of radiation accident, it is very difficult to evaluate the absorbed dose of victims. Therefore, we should develop effective, easy, simple and rapid biodosimetry and its guideline (triage) to be able to be treated the victims as fast as possible. We established the premature chromosome condensation assay and apoptotic fragment assay which was the significant relationship between dose and cell damages to evaluate the irradiation dose as correct and rapid as possible using lymphocytes and crypt cells, and compared with conventional chromosome aberration assay and micronuclei assay.

Study on biological dosimetry of premature chromosome condensation technique

International Nuclear Information System (INIS)

Jiang Bo

2005-01-01

The premature chromosome condensation technique has been applied for biological dosimetry purpose. Premature chromo-some condensation was induced by incubating unstimulated human peripheral blood lymphocytes in the presence of okadaic acid or calyculin A (a phosphatase inhibitor) which eliminated the need for fusion with mitotic cells. It is now possible to examine the early damage induced by radiation. It is simple, exact when it combines with fluorecence in situ hybridization. (authors)

Radiation protection - Performance criteria for service laboratories performing biological dosimetry by cytogenetics

International Nuclear Information System (INIS)

2004-01-01

This International Standard provides criteria for quality assurance and quality control, evaluation of the performance and the accreditation of biological dosimetry by cytogenetic service laboratories. This International Standard addresses: a) the confidentiality of personal information, for the customer and the service laboratory, b) the laboratory safety requirements, c) the calibration sources and calibration dose ranges useful for establishing the reference dose-effect curves allowing the dose estimation from chromosome aberration frequency, and the minimum detection levels, d) the scoring procedure for unstable chromosome aberrations used for biological dosimetry, e) the criteria for converting a measured aberration frequency into an estimate of absorbed dose, f) the reporting of results, g) the quality assurance and quality control, h) informative annexes containing examples of a questionnaire, instructions for customers, a data sheet for recording aberrations and a sample report

Biological dosimetry of X-rays by micronuclei study

International Nuclear Information System (INIS)

Gomez, E.; Silva, A.; Navlet, J.

1991-01-01

Biological dosimetry consists of estimating absorbed doses for people exposed to radiation by mean biological methods. Several indicators used are based in hematological, biochemical an cytogenetics data, although nowadays without doubt, the cytogenetic method is considered to be the most reliable, in this case, the study of micronuclei in peripheral blood lymphocytes cytokinetic blocked can be related to absorbed dose through an experimental calibration curve. An experimental dose-response curve, using micronuclei assay for X-rays at 250 kVp, 43,79 rads/min and temperature 37 degree celsius has been produced. Experimental data is fitted to model Y=c+ α D+β D 2 where. Y is the number micronuclei per cell and D the dose. the curve is compared with those produced elsewhere

Dosimetry

International Nuclear Information System (INIS)

Anon.

1990-01-01

The purpose of ionizing radiation dosimetry is the measurement of the physical and biological consequences of exposure to radiation. As these consequences are proportional to the local absorption of energy, the dosimetry of ionizing radiation is based on the measurement of this quantity. Owing to the size of the effects of ionizing radiation on materials in all of these area, dosimetry plays an essential role in the prevention and the control of radiation exposure. Its use is of great importance in two areas in particular where the employment of ionizing radiation relates to human health: radiation protection, and medical applications. Dosimetry is different for various reasons: owing to the diversity of the physical characteristics produced by different kinds of radiation according to their nature (X- and γ-photons, electrons, neutrons,...), their energy (from several keV to several MeV), the orders of magnitude of the doses being estimated (a factor of about 10 5 between diagnostic and therapeutic applications); and the temporal and spatial variation of the biological parameters entering into the calculations. On the practical level, dosimetry poses two distinct yet closely related problems: the determination of the absorbed dose received by a subject exposed to radiation from a source external to his body (external dosimetry); and the determination of the absorbed dose received by a subject owing to the presence within his body of some radioactive substance (internal dosimetry)

Calibration curves for biological dosimetry

International Nuclear Information System (INIS)

Guerrero C, C.; Brena V, M. . E-mail cgc@nuclear.inin.mx

2004-01-01

The generated information by the investigations in different laboratories of the world, included the ININ, in which settles down that certain class of chromosomal leisure it increases in function of the dose and radiation type, has given by result the obtaining of calibrated curves that are applied in the well-known technique as biological dosimetry. In this work is presented a summary of the work made in the laboratory that includes the calibrated curves for gamma radiation of 60 Cobalt and X rays of 250 k Vp, examples of presumed exposure to ionizing radiation, resolved by means of aberration analysis and the corresponding dose estimate through the equations of the respective curves and finally a comparison among the dose calculations in those people affected by the accident of Ciudad Juarez, carried out by the group of Oak Ridge, USA and those obtained in this laboratory. (Author)

Dicentric chromosome aberration analysis using giemsa and centromere specific fluorescence in-situ hybridization for biological dosimetry: An inter- and intra-laboratory comparison in Indian laboratories

International Nuclear Information System (INIS)

Bhavani, M.; Tamizh Selvan, G.; Kaur, Harpreet; Adhikari, J.S.; Vijayalakshmi, J.; Venkatachalam, P.; Chaudhury, N.K.

2014-01-01

To facilitate efficient handling of large samples, an attempt towards networking of laboratories in India for biological dosimetry was carried out. Human peripheral blood samples were exposed to 60 Co γ-radiation for ten different doses (0–5 Gy) at a dose rate of 0.7 and 2 Gy/min. The chromosomal aberrations (CA) were scored in Giemsa-stained and fluorescence in-situ hybridization with centromere-specific probes. No significant difference (p>0.05) was observed in the CA yield for given doses except 4 and 5 Gy, between the laboratories, among the scorers and also staining methods adapted suggest the reliability and validates the inter-lab comparisons exercise for triage applications. - Highlights: • This is the first report from India on Networking for Biological Dosimetry preparedness using dicentric chromosomal (DC) aberration assay. • There is no significant difference in the in vitro dose response curve (Slope, Intercept, Curvature) constructed among the two labs. • No significant variation in the scoring of DC aberrations between the scorers irrespective of labs. • The DC results obtained by the labs from the Giemsa stained metaphase preparations were confirmed with centromere specific-FISH for further reliability and validity

The method validation step of biological dosimetry accreditation process

International Nuclear Information System (INIS)

Roy, L.; Voisin, P.A.; Guillou, A.C.; Busset, A.; Gregoire, E.; Buard, V.; Delbos, M.; Voisin, Ph.

2006-01-01

One of the missions of the Laboratory of Biological Dosimetry (L.D.B.) of the Institute for Radiation and Nuclear Safety (I.R.S.N.) is to assess the radiological dose after an accidental overexposure suspicion to ionising radiation, by using radio-induced changes of some biological parameters. The 'gold standard' is the yield of dicentrics observed in patients lymphocytes, and this yield is converted in dose using dose effect relationships. This method is complementary to clinical and physical dosimetry, for medical team in charge of the patients. To obtain a formal recognition of its operational activity, the laboratory decided three years ago, to require an accreditation, by following the recommendations of both 17025 General Requirements for the Competence of Testing and Calibration Laboratories and 19238 Performance criteria for service laboratories performing biological dosimetry by cyto-genetics. Diagnostics, risks analysis were realized to control the whole analysis process leading to documents writing. Purchases, personnel department, vocational training were also included in the quality system. Audits were very helpful to improve the quality system. One specificity of this technique is that it is not normalized therefore apart from quality management aspects, several technical points needed some validations. An inventory of potentially influent factors was carried out. To estimate their real effect on the yield of dicentrics, a Placket-Burman experimental design was conducted. The effect of seven parameters was tested: the BUdr (bromodeoxyuridine), PHA (phytohemagglutinin) and colcemid concentration, the culture duration, the incubator temperature, the blood volume and the medium volume. The chosen values were calculated according to the uncertainties on the way they were measured i.e. pipettes, thermometers, test tubes. None of the factors has a significant impact on the yield of dicentrics. Therefore the uncertainty linked to their use was considered as

The method validation step of biological dosimetry accreditation process

Energy Technology Data Exchange (ETDEWEB)

Roy, L.; Voisin, P.A.; Guillou, A.C.; Busset, A.; Gregoire, E.; Buard, V.; Delbos, M.; Voisin, Ph. [Institut de Radioprotection et de Surete Nucleaire, LDB, 92 - Fontenay aux Roses (France)

2006-07-01

One of the missions of the Laboratory of Biological Dosimetry (L.D.B.) of the Institute for Radiation and Nuclear Safety (I.R.S.N.) is to assess the radiological dose after an accidental overexposure suspicion to ionising radiation, by using radio-induced changes of some biological parameters. The 'gold standard' is the yield of dicentrics observed in patients lymphocytes, and this yield is converted in dose using dose effect relationships. This method is complementary to clinical and physical dosimetry, for medical team in charge of the patients. To obtain a formal recognition of its operational activity, the laboratory decided three years ago, to require an accreditation, by following the recommendations of both 17025 General Requirements for the Competence of Testing and Calibration Laboratories and 19238 Performance criteria for service laboratories performing biological dosimetry by cyto-genetics. Diagnostics, risks analysis were realized to control the whole analysis process leading to documents writing. Purchases, personnel department, vocational training were also included in the quality system. Audits were very helpful to improve the quality system. One specificity of this technique is that it is not normalized therefore apart from quality management aspects, several technical points needed some validations. An inventory of potentially influent factors was carried out. To estimate their real effect on the yield of dicentrics, a Placket-Burman experimental design was conducted. The effect of seven parameters was tested: the BUdr (bromodeoxyuridine), PHA (phytohemagglutinin) and colcemid concentration, the culture duration, the incubator temperature, the blood volume and the medium volume. The chosen values were calculated according to the uncertainties on the way they were measured i.e. pipettes, thermometers, test tubes. None of the factors has a significant impact on the yield of dicentrics. Therefore the uncertainty linked to their use was

Biological Dosimetry of X-rays by micronuclei study

International Nuclear Information System (INIS)

Gomez, E.; Silva, A.; Navlet, J.

1991-01-01

Biological dosimetry consists of estimating absorbed doses for people exposed to radiation by mean biological methods. Several indicators used are based in haematological, biochemical an cytogenetics data, although nowadays without doubt, the cytogenetic method is considered to be the most reliable, in this case, the study of micronuclei in peripheral blood lymphocytes citokinetics blocked can be related to absorbed dose through an experimental calibration curve. An experimental dose-response curve, using micronuclei assay for X-rays at 250 kVp, 43,79 rads/min and temperature 37 degree centigree has been produced. Experimental data is fitted to model Y=C+ αD+BD''2 where Y is the number of micronuclei per cell and D the dose. The curve is compared with those produced elsewhere. (Author) 24 refs

Dosimetry Control: Technic and methods. Proceedings of the international workshop 'Actual problems of dosimetry'

International Nuclear Information System (INIS)

Lyutsko, A.M.; Nesterenko, V.B.; Chudakov, V.A.; Konoplya, E.F.; Milyutin, A.A.

1997-10-01

There is a number of unsolved problems of both dosimetric and radiometric control, questions of the biological dosimetry, reconstruction of dozes of irradiation of the population at radiation incidents, which require coordination of efforts of scientists in various areas of a science. The submitted materials are grouped on five units: dosimetry engineering, biological dosimetry and markers of radiation impact, dosimetry of a medical irradiation, normative and measurement assurance of the dosimetric control, monitoring and reconstruction of dozes at radiation incidents

Neutron dosimetry - A review

Energy Technology Data Exchange (ETDEWEB)

Baum, J W

1955-03-29

This review summarizes information on the following subjects: (1) physical processes of importance in neutron dosimetry; (2) biological effects of neutrons; (3) neutron sources; and (4) instruments and methods used in neutron dosimetry. Also, possible improvements in dosimetry instrumentation are outlined and discussed. (author)

Chromosome aberration analysis for biological dosimetry: a review

International Nuclear Information System (INIS)

Paul, S.F.D.; Venkatachalam, P.; Jeevanram, R.K.

1996-01-01

Among various biological dosimetry techniques, dicentric chromosome aberration method appears to be the method of choice in analysing accidental radiation exposure in most of the laboratories. The major advantage of this method is its sensitivity as the number of dicentric chromosomes present in control population is too small and more importantly radiation induces mainly dicentric chromosome aberration among unstable aberration. This report brings out the historical development of various cytogenetic methods, the basic structure of DNA, chromosomes and different forms of chromosome aberrations. It also highlights the construction of dose-response curve for dicentric chromosome and its use in the estimation of radiation dose. (author)

Biological dosimetry of ionizing radiation by chromosomal aberration analysis

International Nuclear Information System (INIS)

Gonzalez-Castano, S.; Silva, A.; Navlet, J.

1990-01-01

Biological dosimetry consists of estimating absorbed doses for people exposed to radiation by mean biological methods. Several indicators used are based in haematological, biochemical, and cytogenetic data, although nowadays without doubt, the cytogenetic method is considered to be the most reliable. In this case, the study ol chromosomal aberrations, normally dicentric chromosomes, in peripheral lymphocytes can be related to absorbed dose through an experimental calibration curve. An experimental dose-response curve, using dicentric chromosomes analysis, X-rays at 300 kVp, 114 rad/min and temperature 37 degree celsius has been produced. Experimental data is fitted to model Y =α + β 1 D + β 2 D 2 , where Y is the number of dicentrics per cell and D the dose. The curve is compared with those produced elsewhere. (Author) 14 refs

Biological dosimetry of ionizing radiation by chromosomal aberration analysis

International Nuclear Information System (INIS)

Navlet Armenta, J.M.; Gonzalez, S.; Silva, A.

1990-01-01

Biological dosimetry consists of estimating absorbed doses for people exposed to radiation by mean biological methods. Several indicators used are based in haemathological, biochemical, and cytogenetic data, although nowadays without doubt, the cytogenetic method is considered to be the most reliable. In this case, the study of chromosomal aberrations, normally dicentric chromosomes, in peripheral lymphocytes can be related to absorbed dose through an experimental calibration curve. An experimental dose-response curve using dicentric chromosomes analysis, X-rays at 300 kVp, 114 rad/min and temperature 37 o C has been produced. Experimental data is fitted to model Y = α+β 1 D+β 2 D 2 , where Y is the number of dicentrics per cell and D the dose. The curve is compared with those produced elsewhere. (Author)

Accreditation and training on internal dosimetry in a laboratory network in Brazil: an increasing demand.

Science.gov (United States)

Dantas, B M; Dantas, A L A; Acar, M E D; Cardoso, J C S; Julião, L M Q C; Lima, M F; Taddei, M H T; Arine, D R; Alonso, T; Ramos, M A P; Fajgelj, A

2011-03-01

In recent years, Brazilian Nuclear Programme has been reviewed and updated by government authorities in face of the demand for energy supply and its associated environmental constraints. The immediate impact of new national programmes and projects in nuclear field is the increase in the number of exposed personnel and the consequent need for reliable dosimetry services in the country. Several Technical Documents related to internal dosimetry have been released by the International Atomic Energy Agency and International Commission on Radiological Protection. However, standard bioassay procedures and methodologies for bioassay data interpretation are still under discussion and, in some cases, both in routine and emergency internal monitoring, procedures can vary from one laboratory to another and responses may differ markedly among Dosimetry Laboratories. Thus, it may be difficult to interpret and use bioassay data generated from different laboratories of a network. The main goal of this work is to implement a National Network of Laboratories aimed to provide reliable internal monitoring services in Brazil. The establishment of harmonised in vivo and in vitro radioanalytical techniques, dose assessment methods and the implementation of the ISO/IEC 17025 requirements will result in the recognition of technical competence of the network.

Artificial neural networks in neutron dosimetry

International Nuclear Information System (INIS)

Vega-Carrillo, H. R.; Hernandez-Davila, V. M.; Manzanares-Acuna, E.; Mercado, G. A.; Gallego, E.; Lorente, A.; Perales-Munoz, W. A.; Robles-Rodriguez, J. A.

2006-01-01

An artificial neural network (ANN) has been designed to obtain neutron doses using only the count rates of a Bonner spheres spectrometer (BSS). Ambient, personal and effective neutron doses were included. One hundred and eighty-one neutron spectra were utilised to calculate the Bonner count rates and the neutron doses. The spectra were transformed from lethargy to energy distribution and were re-binned to 31 energy groups using the MCNP 4C code. Re-binned spectra, UTA4 response matrix and fluence-to-dose coefficients were used to calculate the count rates in the BSS and the doses. Count rates were used as input and the respective doses were used as output during neural network training. Training and testing were carried out in the MATLAB R environment. The impact of uncertainties in BSS count rates upon the dose quantities calculated with the ANN was investigated by modifying by ±5% the BSS count rates used in the training set. The use of ANNs in neutron dosimetry is an alternative procedure that overcomes the drawbacks associated with this ill-conditioned problem. (authors)

Role of cytogenetic techniques in biological dosimetry of absorbed radiation

International Nuclear Information System (INIS)

Rao, B.S.

2016-01-01

In most of the radiation accidents, physical dosimetric information is rarely available. Further, most of the accidental exposures are non-uniform involving either partial body or localized exposure to significant doses. In such situations, physical dosimetry does not provide reliable dose estimate. It has now been realized that biological dosimetric techniques can play an important role in the assessment of absorbed dose. In recent years, a number of biological indicators of radiation have been identified. These include the kinetics of onset and persistence of prodromal syndromes (radiation sickness), cytogenetic changes in peripheral blood lymphocytes, hematological changes, biochemical indicators, ESR spectroscopy of biological samples, induction of gene mutations in red blood cells, cytogenetic and physiological changes in skin and neurophysiological changes. In general, dosimetric information is derived by a combination of several different methods, as they have potential to serve as prognostic indicators. The role of cytogenetic techniques in peripheral blood lymphocytes (PBL) as biological indicators of absorbed radiation is reviewed here

Internal sources dosimetry

International Nuclear Information System (INIS)

Savio, Eduardo

1994-01-01

The absorbed dose, need of estimation in risk evaluation in the application of radiopharmaceuticals in Nuclear Medicine practice,internal dosimetry,internal and external sources. Calculation methodology,Marinelli model,MIRD system for absorbed dose calculation based on biological parameters of radiopharmaceutical in human body or individual,energy of emitted radiations by administered radionuclide, fraction of emitted energy that is absorbed by target body.Limitation of the MIRD calculation model. A explanation of Marinelli method of dosimetry calculation,β dosimetry. Y dosimetry, effective dose, calculation in organs and tissues, examples. Bibliography .

The use of the dicentric assay for biological dosimetry for radiation accidents in Bulgaria.

Science.gov (United States)

Hadjidekova, Valeria; Hristova, Rositsa; Ainsbury, Elizabeth A; Atanasova, Petya; Popova, Ljubomira; Staynova, Albena

2010-02-01

This paper details the construction of a 137Cs gamma calibration curve that has been established for dicentric assay and the testing and validation of the curve through biological dosimetry in three situations of suspected workplace overexposure that arose accidentally or through negligence or lack of appropriate safety measures. The three situations were: (1) suspected 137Cs contamination in a factory air supply; (2) suspected exposure to an industrial 192Ir source; and (3) accidental exposure of construction workers to radiation from a 60Co radiotherapy source in a hospital medical physics department. From a total of 24 potentially-exposed subjects, only one worker was found to have a statistically significant dose (0.16 Gy, 95% confidence intervals 0.02-0.43 Gy). In all other cases, the main function of the biological dosimetry was to reassure the subjects that any dose received was low.

Mammalian spermatogenesis as a new system for biologic dosimetry of ionizing irradiation

International Nuclear Information System (INIS)

Hacker, U.; Schumann, J.; Goehde, W.

1982-01-01

The radiation induced reduction of the number of DNA synthesizing cells (spermatogonia) is described using the fast-working flow cytophotometer. Since there is no shoulder in the initial part of the dose response curve this model of biologic dosimetry is very sensitive. The D 50 value is 0.25 Gy; a radiation exposure of only 0.1 Gy can be detected. (Auth.)

Mammalian spermatogenesis as a new system for biologic dosimetry of ionizing irradiation

Energy Technology Data Exchange (ETDEWEB)

Hacker, U; Schumann, J; Goehde, W [Muenster Univ. (Germany, F.R.). Radiologische Klinik

1982-01-01

The radiation induced reduction of the number of DNA synthesizing cells (spermatogonia) is described using the fast-working flow cytophotometer. Since there is no shoulder in the initial part of the dose response curve this model of biologic dosimetry is very sensitive. The D/sub 50/ value is 0.25 Gy; a radiation exposure of only 0.1 Gy can be detected.

Biological dosimetry studies for boron neutron capture therapy at the RA-1 research reactor facility

International Nuclear Information System (INIS)

Trivillin, Veronica A.; Heber, Elisa M.; Itoiz, Maria E.; Schwint, Amanda E.; Castillo, Jorge

2004-01-01

Initial physical dosimetry measurements have been completed using activation spectrometry and thermoluminescent dosimeters to characterize the BNCT facility developed at the RA-1 research reactor operated by the National Atomic Energy Commission in Buenos Aires. Biological dosimetry was performed employing the hamster cheek pouch oral cancer model previously validated for BNCT studies by our group. Results indicate that the RA-1 neutron source produces useful dose rates for BNCT studies but that some improvements in the initial configuration will be needed to optimize the spectrum for thermal-neutron BNCT research applications. (author)

Dominating biological networks.

Directory of Open Access Journals (Sweden)

Tijana Milenković

Full Text Available Proteins are essential macromolecules of life that carry out most cellular processes. Since proteins aggregate to perform function, and since protein-protein interaction (PPI networks model these aggregations, one would expect to uncover new biology from PPI network topology. Hence, using PPI networks to predict protein function and role of protein pathways in disease has received attention. A debate remains open about whether network properties of "biologically central (BC" genes (i.e., their protein products, such as those involved in aging, cancer, infectious diseases, or signaling and drug-targeted pathways, exhibit some topological centrality compared to the rest of the proteins in the human PPI network.To help resolve this debate, we design new network-based approaches and apply them to get new insight into biological function and disease. We hypothesize that BC genes have a topologically central (TC role in the human PPI network. We propose two different concepts of topological centrality. We design a new centrality measure to capture complex wirings of proteins in the network that identifies as TC those proteins that reside in dense extended network neighborhoods. Also, we use the notion of domination and find dominating sets (DSs in the PPI network, i.e., sets of proteins such that every protein is either in the DS or is a neighbor of the DS. Clearly, a DS has a TC role, as it enables efficient communication between different network parts. We find statistically significant enrichment in BC genes of TC nodes and outperform the existing methods indicating that genes involved in key biological processes occupy topologically complex and dense regions of the network and correspond to its "spine" that connects all other network parts and can thus pass cellular signals efficiently throughout the network. To our knowledge, this is the first study that explores domination in the context of PPI networks.

Review of retrospective dosimetry techniques for external ionising radiation exposures

International Nuclear Information System (INIS)

Ainsbury, E. A.; Bakhanova, E.; Barquinero, J. F.; Brai, M.; Chumak, V.; Correcher, V.; Darroudi, F.; Fattibene, P.; Gruel, G.; Guclu, I.; Horn, S.; Jaworska, A.; Kulka, U.; Lindholm, C.; Lloyd, D.; Longo, A.; Marrale, M.; Monteiro Gil, O.; Oestreicher, U.; Pajic, J.; Rakic, B.; Romm, H.; Trompier, F.; Veronese, I.; Voisin, P.; Vral, A.; Whitehouse, C. A.; Wieser, A.; Woda, C.; Wojcik, A.; Rothkamm, K.

2011-01-01

The current focus on networking and mutual assistance in the management of radiation accidents or incidents has demonstrated the importance of a joined-up approach in physical and biological dosimetry. To this end, the European Radiation Dosimetry Working Group 10 on 'Retrospective Dosimetry' has been set up by individuals from a wide range of disciplines across Europe. Here, established and emerging dosimetry methods are reviewed, which can be used immediately and retrospectively following external ionising radiation exposure. Endpoints and assays include dicentrics, translocations, premature chromosome condensation, micronuclei, somatic mutations, gene expression, electron paramagnetic resonance, thermoluminescence, optically stimulated luminescence, neutron activation, haematology, protein biomarkers and analytical dose reconstruction. Individual characteristics of these techniques, their limitations and potential for further development are reviewed, and their usefulness in specific exposure scenarios is discussed. Whilst no single technique fulfils the criteria of an ideal dosemeter, an integrated approach using multiple techniques tailored to the exposure scenario can cover most requirements. (authors)

Network biology: Describing biological systems by complex networks. Comment on "Network science of biological systems at different scales: A review" by M. Gosak et al.

Science.gov (United States)

Jalili, Mahdi

2018-03-01

I enjoyed reading Gosak et al. review on analysing biological systems from network science perspective [1]. Network science, first started within Physics community, is now a mature multidisciplinary field of science with many applications ranging from Ecology to biology, medicine, social sciences, engineering and computer science. Gosak et al. discussed how biological systems can be modelled and described by complex network theory which is an important application of network science. Although there has been considerable progress in network biology over the past two decades, this is just the beginning and network science has a great deal to offer to biology and medical sciences.

Non-invasive biological dosimetry of the skin

International Nuclear Information System (INIS)

Barton, S.; Marks, R.; Charles, M.W.; Wells, J.

1986-01-01

Investigations designed to identify a potential biological dosimetry technique to examine the effects of X-ray doses down to 0.1 Gy on human skin, are described. In a variety of parameters assessed, the most important changes observed were a significant depression in epidermal cell production in the basal layer after X-ray doses between 0.5 Gy and 1 Gy and a concomitant reduction in the desquamation rate of corneocytes after doses above 1 Gy. Changes in non-specific esterase (NSE) activity were also observed. Further work is described which applies these results to several non-invasive techniques which may have potential for routine application. Preliminary data from irradiated human skin are presented on the measurement of forced desquamation, the evaluation of NSE activity from hair samples and the evaluation of stratum corneum turnover time using the fluorescent dye, dansyl chloride. (author)

Biological dosimetry after criticality accidents. Intercomparison exercise in the Silene Reactor - France

International Nuclear Information System (INIS)

Di Giorgio, Marina; Vallerga, Maria B.; Taja, Maria R.

2004-01-01

The Institute of Radiation Protection and Nuclear Safety Institute (IRSN) organized an international biological dosimetry intercomparison, at the SILENE experimental reactor (Valduc, France), simulating different criticality scenarios: bare source 4 Gy, lead shield source 1 and 2 Gy and gamma pure 60 Co source 2 Gy. Fifteen laboratories were involved in this exercise, including the Argentine Biological Dosimetry Laboratory. The purposes of the intercomparison were: 1) To compare the unstable chromosome aberration (UCA) frequency observed by the different laboratories; and 2) To compare the dose estimation for gamma rays and neutrons. The objects of the present work were: I) To compare the mean frequency of UCA observed by the Argentine laboratory with the mean frequency observed by the participant laboratories as a whole. II) To compare the dose estimates performed by the Argentine lab with those estimated by the other laboratories involved in the second stage of the intercomparison. Overall, the mean frequencies of UCA and the correspondent 95% confidence limits obtained by the Argentine lab were consistent with the results obtained by the laboratories as a whole. For the gamma pure scenario, smaller variations were observed among laboratories in terms of dose (CV=18,2%) than in terms of frequency (CV=30,1%). For the mixed field scenarios, only four laboratories, including the Argentine lab, estimated gamma and neutron components of the total dose and just two (Argentine lab and lab 12) were in agreement with the given physical doses. The 1 Gy experiment presented lesser variations both in terms of frequency and dose than the other two scenarios. For the 4 and 2 Gy experiments, variations in neutron dose were more significant than variations in gamma dose, related to the magnitude of the dose. The results suggest that intercomparison exercises jointly with the accreditation of biological dosimetry by cytogenetic service laboratories, in compliance with ISO

Synthetic biological networks

International Nuclear Information System (INIS)

Archer, Eric; Süel, Gürol M

2013-01-01

Despite their obvious relationship and overlap, the field of physics is blessed with many insightful laws, while such laws are sadly absent in biology. Here we aim to discuss how the rise of a more recent field known as synthetic biology may allow us to more directly test hypotheses regarding the possible design principles of natural biological networks and systems. In particular, this review focuses on synthetic gene regulatory networks engineered to perform specific functions or exhibit particular dynamic behaviors. Advances in synthetic biology may set the stage to uncover the relationship of potential biological principles to those developed in physics. (review article)

Radiation protection dosimetry in medicine - Report of the working group n.9 of the European radiation dosimetry group (EURADOS) - coordinated network for radiation dosimetry (CONRAD - contract EC N) fp6-12684

International Nuclear Information System (INIS)

2009-01-01

This report present the results achieved within the frame of the work the WP 7 (Radiation Protection Dosimetry of Medical Staff) of the coordination action CONRAD (Coordinated Network for Radiation Dosimetry) funded through the 6. EU Framework Program. This action was coordinated by EURADOS (European Radiation Dosimetry Group). EURADOS is an organization founded in 1981 to advance the scientific understanding and the technical development of the dosimetry of ionising radiation in the fields of radiation protection, radiobiology, radiation therapy and medical diagnosis by promoting collaboration between European laboratories. WP7 coordinates and promotes European research for the assessment of occupational exposures to staff in therapeutic and diagnostic radiology workplaces. Research is coordinated through sub-groups covering three specific areas: 1. Extremity dosimetry in nuclear medicine and interventional radiology: this sub-group coordinates investigations in the specific fields of the hospitals and studies of doses to different parts of the hands, arms, legs and feet; 2. Practice of double dosimetry: this sub-group reviews and evaluates the different methods and algorithms for the use of dosemeters placed above and below lead aprons in large exposure during interventional radiology procedures, especially to determine effective doses to cardiologists during cardiac catheterization; and 3. Use of electronic personal dosemeters in interventional radiology: this sub-group coordinates investigations in laboratories and hospitals, and intercomparisons with passive dosemeters with the aim to enable the formulation of standards. (authors)

Biological dosimetry of patients with differenced carcinoma of thyroid treated with Iodine-131

International Nuclear Information System (INIS)

Vallerga, M. B.; Rojo, A.M.; Taja, M.R.; Deluca, G.; Di Giorgio, M.; Fadel, A.; Cabrejas, M.; Valdivieso, C.

2006-01-01

The administration of I-131 to patient with Differentiated Thyroid Carcinoma (CaDiT) it is used inside the therapeutic outline as later step to the thyroidectomy. However, the good activity to give is of difficult determination due to factors such as, the variability in the capacity of tumoral reception of the I-131, distribution of the pharmaceutical, physiologic status, other associate pathologies, grade of advance of the illness, and previous treatments. Additionally, the activity to administer is dependent of the dose of tolerance in the healthy tissues; superior dose to 2 Gy in bone marrow, its could drive to myelotoxicity. At the moment, the form more extended of administration it is the empiric prescription that considers clinical parameters and of laboratory for their determination. Presently work, the protocol of applied treatment incorporates the evaluation for internal dosimetry and biological dosimetry to estimate absorbed dose in bone marrow. The biological estimate of the dose of these patients is based on the quantification of chromosomal aberrations whose frequency is referred to a curve-dose response in which the lymphocytes is irradiated in vitro with I-131, allowing to determine the in vivo dose to the patient's circulating lymphocytes. The objective of the present work is to determine the applicability of different cytogenetic essays in the estimate of the absorbed dose to the whole body or specific organs. Three patients were evaluated with CaDiT. Their treatment protocol consisted on a tracer administration of radioactive iodine of 74 - 111 MBq (2 - 3 mCi) and a therapy 7,4 - 11,1 GBq (200 - 300 mCi). Previous to the tracer administration and 8 days post-therapeutic administration took samples of veined blood that were evaluated by biological dosimetry by means of the application of the techniques: conventional cytogenetic Micronucleus and FISH (Hybridization in situ by Fluorescence). Starting from the frequencies of observed chromosomal

General guidelines for safe and expeditious international transport of samples subjected to biological dosimetry assessment.

Science.gov (United States)

Di Giorgio, Marina; Radl, Analía; Taja, María R; Bubniak, Ruth; Deminge, Mayra; Sapienza, Carla; Vázquez, Marina; Baciu, Florian; Kenny, Pat

2014-06-01

It has been observed that victims of accidental overexposures show better chance of survival if they receive medical treatment early. The increased risk of scenarios involving mass casualties has stimulated the scientific community to develop tools that would help the medical doctors to treat victims. The biological dosimetry has become a routine test to estimate the dose, supplementing physical and clinical dosimetry. In case of radiation emergencies, in order to provide timely and effectively biological dosimetry assistance it is essential to guarantee an adequate transport of blood samples in principal, for providing support to countries that do not have biodosimetry laboratories. The objective of the present paper is to provide general guidelines, summarised in 10 points, for timely and proper receiving and sending of blood samples under National and International regulations, for safe and expeditious international transport. These guidelines cover the classification, packaging, marking, labelling, refrigeration and documentation requirements for the international shipping of blood samples and pellets, to provide assistance missions with a tool that would contribute with the preparedness for an effective biodosimetric response in cases of radiological or nuclear emergencies. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Development of radiation biological dosimetry and treatment of radiation-induced damaged tissue

Energy Technology Data Exchange (ETDEWEB)

Cho, Chul Koo; Kim, Tae Hwan; Lee, Yun Sil [and others

2000-04-01

Util now, only a few methods have been developed for radiation biological dosimetry such as conventional chromosome aberration and micronucleus in peripheral blood cell. However, because these methods not only can be estimated by the expert, but also have a little limitation due to need high technique and many times in the case of radiation accident, it is very difficult to evaluate the absorbed dose of victims. Therefore, we should develop effective, easy, simple and rapid biodosimetry and its guideline(triage) to be able to be treated the victims as fast as possible. We established the apoptotic fragment assay, PCC, comet assay, and micronucleus assay which was the significant relationship between dose and cell damages to evaluate the irradiated dose as correct and rapid as possible using lymphocytes and crypt cells, and compared with chromosome dosimetry and micronucleus assay.

Development of radiation biological dosimetry and treatment of radiation-induced damaged tissue

International Nuclear Information System (INIS)

Cho, Chul Koo; Kim, Tae Hwan; Lee, Yun Sil

2000-04-01

Util now, only a few methods have been developed for radiation biological dosimetry such as conventional chromosome aberration and micronucleus in peripheral blood cell. However, because these methods not only can be estimated by the expert, but also have a little limitation due to need high technique and many times in the case of radiation accident, it is very difficult to evaluate the absorbed dose of victims. Therefore, we should develop effective, easy, simple and rapid biodosimetry and its guideline(triage) to be able to be treated the victims as fast as possible. We established the apoptotic fragment assay, PCC, comet assay, and micronucleus assay which was the significant relationship between dose and cell damages to evaluate the irradiated dose as correct and rapid as possible using lymphocytes and crypt cells, and compared with chromosome dosimetry and micronucleus assay

Advances in biomedical dosimetry

International Nuclear Information System (INIS)

1981-01-01

Full text: Radiation dosimetry, the accurate determination of the absorbed dose within an irradiated body or a piece of material, is a prerequisite for all applications of ionizing radiation. This has been known since the very first radiation applications in medicine and biology, and increasing efforts are being made by radiation researchers to develop more reliable, effective and safe instruments, and to further improve dosimetric accuracy for all types of radiation used. Development of new techniques and instrumentation was particularly fast in the field of both medical diagnostic and therapeutic radiology. Thus, in Paris in October the IAEA held the latest symposium in its continuing series on dosimetry in medicine and biology. The last one was held in Vienna in 1975. High-quality dosimetry is obviously of great importance for human health, whether the objectives lie in the prevention and control of risks associated with the nuclear industry, in medical uses of radioactive substances or X-ray beams for diagnostic purposes, or in the application of photon, electron or neutron beams in radiotherapy. The symposium dealt with the following subjects: General aspects of dosimetry; Special physical and biomedical aspects; Determination of absorbed dose; Standardization and calibration of dosimetric systems; and Development of dosimetric systems. The forty or so papers presented and the discussions that followed them brought out a certain number of dominant themes, among which three deserve particular mention. - The recent generalization of the International System of Units having prompted a fundamental reassessment of the dosimetric quantities to be considered in calibrating measuring instruments, various proposals were advanced by the representatives of national metrology laboratories to replace the quantity 'exposure' (SI unit = coulomb/kg) by 'Kerma' or 'absorbed dose' (unit joule/kg, the special name of which is 'gray'), this latter being closer to the practical

Biological Dosimetry of In Vitro Irradiation with Radionuclides : Comparison of Whole Blood, Lymphocyte and Buffy Coat Culture

International Nuclear Information System (INIS)

Kim, Jong Ho; Lee, Dong Soo; Choi, Chang Woon; Chung, June Key; Lee, Myung Chul; Koh, Chang Soon; Kim, Chong Soon; Kim, Hee Geun; Kang, Duck Won; Song, Myung Jae

1995-01-01

The purpose of this study was to establish mononuclear cell cultures such as lymphocytes or buffy coat for the biological dosimetry of in vitro irradiation of the radionuclide Tc-99m in order to exclude the effect of residual doses seen in the cultures of whole blood. Biological dosimetry of Tc-99m on cultured mononuclear cells at doses ranging from 0.05 to 6.00 Gy, by scoring unstable chromosomal aberrations(Ydr) observed in cultured lymphocytes, were performed using peripheral venous blood of healthy normal person. The results showed that; (1) In vitro irradiation of radioisotope in separated lymphocyte or buffy coat showed trace amount af residual doses of isotope after washing. Residual doses of isotopes are increased in proportion tn exposed time and irradiated dose without difference between I-131 anct Tc-99m. (2) We obtained these linear-quadratic dose response equations in lymphocyte and buffy coat culture after in vitro irradiation of Tc-99m, respectively (Ydr = 0,001949 D 2 +0,006279D+ 0.000185; Ydr= 0.002531 D 2 -0.003274 D+0.003488). In conclusion, the linear quadrstic dose response equation from in vitro irradiation of Tc-99m with lymphocyte and buffy coat culture was thought to be useful for assessing Tc-99m indueed biological effects. And mononuclear cell cultures seem to be the most appropriate experimental model for the assessment of biological dosimetry of internal irradiation of radionuclides.

Conventional radiation-biological dosimetry using frequencies of unstable chromosome aberrations

International Nuclear Information System (INIS)

Ramalho, Adriana T.; Costa, Maria Lucia P.; Oliveira, Monica S.

1998-01-01

Frequency of chromosome aberrations detected by conventional cytogenetics is a very useful parameter in biological radiodosimetry. It can be used for estimating absorbed doses in individuals working with radioactive sources and individuals accidentally exposed to radiation. In the first case subjects wear physical dosimeters as a routine safety habit. The laboratory at the Institute of Radioprotection and Dosimetry (IRD, Brazil) has been using conventional cytogenetic analysis to complement data obtained by physical dosimetry since 1983. Until now, more than one hundred cases were investigated where individual physical dosimeters detected occupational exposure (above the safety limits allowed). In total, only 34% of these cases were confirmed by conventional cytogenetic dosimetry. Also, conventional cytogenetic analysis following the radiation accident of Goiania (Brazil) in 1987 have been used. Peripheral lymphocytes from 129 exposed or potentially exposed individuals were analyzed for the frequencies of unstable chromosomal aberrations (dicentrics, centric rings and acentrics fragments) to estimate absorbed radiation doses. During the emergency period, doses were estimated to help immediate medical treatment using in vitro calibration curves produced before the accident. Later on, doses were assessed once more using new in vitro calibration curves. A drawback of this technique is that unstable aberrations are lost after exposure. To investigate the mean lifespan of lymphocytes containing dicentric and ring aberrations, we have followed 15 victims of the Goiania accident over all these years. Results suggest that the disappearance of unstable aberrations is dose-dependent. This could explain the variation in the results found among studies in this field

Conventional radiation-biological dosimetry using frequencies of unstable chromosome aberrations

Energy Technology Data Exchange (ETDEWEB)

Ramalho, Adriana T.; Costa, Maria Lucia P.; Oliveira, Monica S. [Institute of Radioprotection and Dosimetry (IRD), National Commission of Nuclear Energy (CNEN), Av. Salvador Allende, Cx. P. 37750, Rio de Janeiro 22.780-160 (Brazil)

1998-08-03

Frequency of chromosome aberrations detected by conventional cytogenetics is a very useful parameter in biological radiodosimetry. It can be used for estimating absorbed doses in individuals working with radioactive sources and individuals accidentally exposed to radiation. In the first case subjects wear physical dosimeters as a routine safety habit. The laboratory at the Institute of Radioprotection and Dosimetry (IRD, Brazil) has been using conventional cytogenetic analysis to complement data obtained by physical dosimetry since 1983. Until now, more than one hundred cases were investigated where individual physical dosimeters detected occupational exposure (above the safety limits allowed). In total, only 34% of these cases were confirmed by conventional cytogenetic dosimetry. Also, conventional cytogenetic analysis following the radiation accident of Goiania (Brazil) in 1987 have been used. Peripheral lymphocytes from 129 exposed or potentially exposed individuals were analyzed for the frequencies of unstable chromosomal aberrations (dicentrics, centric rings and acentrics fragments) to estimate absorbed radiation doses. During the emergency period, doses were estimated to help immediate medical treatment using in vitro calibration curves produced before the accident. Later on, doses were assessed once more using new in vitro calibration curves. A drawback of this technique is that unstable aberrations are lost after exposure. To investigate the mean lifespan of lymphocytes containing dicentric and ring aberrations, we have followed 15 victims of the Goiania accident over all these years. Results suggest that the disappearance of unstable aberrations is dose-dependent. This could explain the variation in the results found among studies in this field

Bibliographical database of radiation biological dosimetry and risk assessment: Part 2

International Nuclear Information System (INIS)

Straume, T.; Ricker, Y.; Thut, M.

1990-09-01

This is part 11 of a database constructed to support research in radiation biological dosimetry and risk assessment. Relevant publications were identified through detailed searches of national and international electronic databases and through our personal knowledge of the subject. Publications were numbered and key worded, and referenced in an electronic data-retrieval system that permits quick access through computerized searches on authors, key words, title, year, journal name, or publication number. Photocopies of the publications contained in the database are maintained in a file that is numerically arranged by our publication acquisition numbers. This volume contains 1048 additional entries, which are listed in alphabetical order by author. The computer software used for the database is a simple but sophisticated relational database program that permits quick information access, high flexibility, and the creation of customized reports. This program is inexpensive and is commercially available for the Macintosh and the IBM PC. Although the database entries were made using a Macintosh computer, we have the capability to convert the files into the IBM PC version. As of this date, the database cites 2260 publications. Citations in the database are from 200 different scientific journals. There are also references to 80 books and published symposia, and 158 reports. Information relevant to radiation biological dosimetry and risk assessment is widely distributed within the scientific literature, although a few journals clearly predominate. The journals publishing the largest number of relevant papers are Health Physics, with a total of 242 citations in the database, and Mutation Research, with 185 citations. Other journals with over 100 citations in the database, are Radiation Research, with 136, and International Journal of Radiation Biology, with 132

Training of reverse propagation neural networks applied to neutron dosimetry

International Nuclear Information System (INIS)

Hernandez P, C. F.; Martinez B, M. R.; Leon P, A. A.; Espinoza G, J. G.; Castaneda M, V. H.; Solis S, L. O.; Castaneda M, R.; Ortiz R, M.; Vega C, H. R.; Mendez V, R.; Gallego, E.; De Sousa L, M. A.

2016-10-01

Neutron dosimetry is of great importance in radiation protection as aims to provide dosimetric quantities to assess the magnitude of detrimental health effects due to exposure of neutron radiation. To quantify detriment to health is necessary to evaluate the dose received by the occupationally exposed personnel using different detection systems called dosimeters, which have very dependent responses to the energy distribution of neutrons. The neutron detection is a much more complex problem than the detection of charged particles, since it does not carry an electric charge, does not cause direct ionization and has a greater penetration power giving the possibility of interacting with matter in a different way. Because of this, various neutron detection systems have been developed, among which the Bonner spheres spectrometric system stands out due to the advantages that possesses, such as a wide range of energy, high sensitivity and easy operation. However, once obtained the counting rates, the problem lies in the neutron spectrum deconvolution, necessary for the calculation of the doses, using different mathematical methods such as Monte Carlo, maximum entropy, iterative methods among others, which present various difficulties that have motivated the development of new technologies. Nowadays, methods based on artificial intelligence technologies are being used to perform neutron dosimetry, mainly using the theory of artificial neural networks. In these new methods the need for spectrum reconstruction can be eliminated for the calculation of the doses. In this work an artificial neural network or reverse propagation was trained for the calculation of 15 equivalent doses from the counting rates of the Bonner spheres spectrometric system using a set of 7 spheres, one of 2 spheres and two of a single sphere of different sizes, testing different error values until finding the most appropriate. The optimum network topology was obtained through the robust design

Activities developed by the biological dosimetry laboratory of the Autoridad Regulatoria Nuclear - ARN of Argentina; Actividades desarrolladas por el laboratorio de dosimetria biologica de la Autoridad Regulatoria Nuclear de Argentina

Energy Technology Data Exchange (ETDEWEB)

Radl, A.; Sapienza, C. E.; Taja, M. R.; Bubniak, R.; Deminge, M.; Di Giorgio, M., E-mail: csapienza@arn.gob.ar [Autoridad Regulatoria Nuclear (ARN), Buenos Aires (Argentina)

2013-07-01

Biological dosimetry (DB) allows to estimate doses absorbed in individuals exposed to ionizing radiation through the quantification of stable and unstable chromosome aberrations (SCA and UCA). The frequency of these aberrations is referred to a calibration dose response curve (in vitro) to determine the doses of the individual to the whole body. The DB is a necessary support for programs of national radiation protection and response systems in nuclear or radiological emergencies in the event of accidental or incidental, single overexposure or large scale. In this context the Laboratory of Dosimetry Biological (LDB) of the Authority Regulatory Nuclear (ARN) Argentina develops and applies different dosimeters cytogenetic from four decades ago. These dosimeters provide a fact more within the whole of the information necessary for an accidental, complementing the physical and clinical dosimetry exposure assessment. The most widely used in the DB biodosimetric method is the quantification of SCA (dicentrics and rings Central) from a sample of venous blood. The LDB is accredited for the trial, under rules IRAM 301: 2005 (ISO / IEC 17025: 2005) and ISO 19238:2004. Test applies to the immediate dosimetry evaluation of acute exposures, all or a large part of the body in the range 0,1-5 Gy. In this context the LDB is part of the Latin American network of DB (LBDNet), BioDoseNet-who and response system in radiological emergencies and nuclear IAEA-RANET, being enabled to summon the LBDNet if necessary.

Dosimetry of internal emitters

International Nuclear Information System (INIS)

Anon.

1982-01-01

The Dosimetry of Internal Emitter Program endeavors to refine the correlation between radiation dose and observed biological effects. The program is presently engaged in the development of studies that will demonstrate the applicability of microdosimetry models developed under the Microdosimetry of Internal Sources Program. The program also provides guidance and assistance to Pacific Northwest Laboratory's Biology Department in the dosimetric analysis of internally deposited radionuclides. This report deals with alpha particle dosimetry plutonium 239 inhalation, and in vitro studies of chromosomal observations

Integration of new biological and physical retrospective dosimetry methods into EU emergency response plans - joint RENEB and EURADOS inter-laboratory comparisons.

Science.gov (United States)

Ainsbury, Elizabeth; Badie, Christophe; Barnard, Stephen; Manning, Grainne; Moquet, Jayne; Abend, Michael; Antunes, Ana Catarina; Barrios, Lleonard; Bassinet, Celine; Beinke, Christina; Bortolin, Emanuela; Bossin, Lily; Bricknell, Clare; Brzoska, Kamil; Buraczewska, Iwona; Castaño, Carlos Huertas; Čemusová, Zina; Christiansson, Maria; Cordero, Santiago Mateos; Cosler, Guillaume; Monaca, Sara Della; Desangles, François; Discher, Michael; Dominguez, Inmaculada; Doucha-Senf, Sven; Eakins, Jon; Fattibene, Paola; Filippi, Silvia; Frenzel, Monika; Georgieva, Dimka; Gregoire, Eric; Guogyte, Kamile; Hadjidekova, Valeria; Hadjiiska, Ljubomira; Hristova, Rositsa; Karakosta, Maria; Kis, Enikő; Kriehuber, Ralf; Lee, Jungil; Lloyd, David; Lumniczky, Katalin; Lyng, Fiona; Macaeva, Ellina; Majewski, Matthaeus; Vanda Martins, S; McKeever, Stephen W S; Meade, Aidan; Medipally, Dinesh; Meschini, Roberta; M'kacher, Radhia; Gil, Octávia Monteiro; Montero, Alegria; Moreno, Mercedes; Noditi, Mihaela; Oestreicher, Ursula; Oskamp, Dominik; Palitti, Fabrizio; Palma, Valentina; Pantelias, Gabriel; Pateux, Jerome; Patrono, Clarice; Pepe, Gaetano; Port, Matthias; Prieto, María Jesús; Quattrini, Maria Cristina; Quintens, Roel; Ricoul, Michelle; Roy, Laurence; Sabatier, Laure; Sebastià, Natividad; Sholom, Sergey; Sommer, Sylwester; Staynova, Albena; Strunz, Sonja; Terzoudi, Georgia; Testa, Antonella; Trompier, Francois; Valente, Marco; Hoey, Olivier Van; Veronese, Ivan; Wojcik, Andrzej; Woda, Clemens

2017-01-01

RENEB, 'Realising the European Network of Biodosimetry and Physical Retrospective Dosimetry,' is a network for research and emergency response mutual assistance in biodosimetry within the EU. Within this extremely active network, a number of new dosimetry methods have recently been proposed or developed. There is a requirement to test and/or validate these candidate techniques and inter-comparison exercises are a well-established method for such validation. The authors present details of inter-comparisons of four such new methods: dicentric chromosome analysis including telomere and centromere staining; the gene expression assay carried out in whole blood; Raman spectroscopy on blood lymphocytes, and detection of radiation-induced thermoluminescent signals in glass screens taken from mobile phones. In general the results show good agreement between the laboratories and methods within the expected levels of uncertainty, and thus demonstrate that there is a lot of potential for each of the candidate techniques. Further work is required before the new methods can be included within the suite of reliable dosimetry methods for use by RENEB partners and others in routine and emergency response scenarios.

Techniques for radiation measurements: Micro-dosimetry and dosimetry

International Nuclear Information System (INIS)

Waker, A. J.

2006-01-01

Experimental Micro-dosimetry is concerned with the determination of radiation quality and how this can be specified in terms of the distribution of energy deposition arising from the interaction of a radiation field with a particular target site. This paper discusses various techniques that have been developed to measure radiation energy deposition over the three orders of magnitude of site-size; nano-meter, micrometer and millimetre, which radiation biology suggests is required to fully account for radiation quality. Inevitably, much of the discussion will concern the use of tissue-equivalent proportional counters and variants of this device, but other technologies that have been studied, or are under development, for their potential in experimental Micro-dosimetry are also covered. Through an examination of some of the quantities used in radiation metrology and dosimetry the natural link with Micro-dosimetric techniques will be shown and the particular benefits of using Micro-dosimetric methods for dosimetry illustrated. (authors)

Activities of Project 'Cooperation and development with Latin America and Iberian in Biological Dosimetry of Iberian Group of Radiation Protection Societies

International Nuclear Information System (INIS)

Nasazzi, Nora B.; Taja, Maria R.; Giorgio, Marina di; Garcia Lima, Omar; Lamadrid, Ana I.; Olivares, Pilar; Moreno, Mercedes; Prieto, Maria J.; Espinosa, Marco

2001-01-01

In 1996 the GRIAPRA Group (Latin American and Iberian Group of Radiation Protection Societies) was established with the participation of Argentina, Brazil, Cuba, Mexico, Peru, Portugal and Spain. In 1998 began the biennial Collaborative Working Project 'Cooperation and Development with Latin America in Biological Dosimetry', partially supported by the Extremadura Government, Spain, initially involving five countries: Argentina, Cuba, Peru, Portugal and Spain. The general aim of the project is to create an Latin American and Iberian Biological Dosimetry Laboratories Coordinated Group in order to: give mutual cooperation and to other countries if required, in the case of radiological accident; contribute to enhance the technical capabilities of the participant laboratories; promote the installment of laboratories on this field in countries that does not have it yet through the training of human resources and providing the necessary equipment and, finally, perform jointly research activities in biological dosimetry. The activities designed in order to accomplish the project specific aims for the 1998-2000 period have been achieved. Description and results are presented. (author)

The IAEA/WHO Network of SSDLs. Short history, activity and future trends[Secondary Standard Dosimetry Laboratories

Energy Technology Data Exchange (ETDEWEB)

Svensson, Hans; Zsdanszky, Kalman [International Atomic Energy Agency, Dosimtery Section, Vienna (Austria)

1990-04-01

In 1968 at an IAEA meeting in Caracas, Venezuela, the dosimetric requirements of radiotherapy centres were discussed. At that time many radiotherapy departments in developing countries did not have a dosimeter. Even those that had a dosimeter were seldom able to send it to a Primary Standard Dosimetry Laboratory (PSDL) for proper calibration. The establishment of regional dosimeter calibration laboratories was recommended by the participating experts including representatives of WHO. There was general consent that it was not necessary to establish in every country a PSDL, which would need a very qualified staff and sophisticated equipment. Instead, the establishment of Secondary Standard Dosimetry Laboratories (SSDLs) was found to be an adequate solution to the problem. The new idea of SSDLs and their role within the international metrology system was thoroughly discussed at a joint IAEA/WHO meeting in Rio de Janeiro (scientific secretaries: H.H. Eisenlohr, IAEA and W. Seelentag, WHO) in December 1974. Considering the fact that an SSDL cannot work in isolation the experts recommended the setting up of an international Network of SSDLs under the auspices of the IAEA and WHO. The statutes of the IAEA/WHO Network of SSDLs were laid down in a Working Arrangement between the IAEA and WHO in April 1976. Later in 1976 the two Directors General of the IAEA and WHO formally announced by circular letters to their respective member states the establishment of the IAEA/WHO Network of SSDL. The Criteria for the Establishment of a Secondary Standard Dosimetry Laboratory were formulated by an Advisory Group and were attached to these letters. At that time there existed already 8 laboratories, which had been designated by WHO during the period 1968-1976 as regional reference centres for dosimetry. Another SSDL had been set up in Rio de Janeiro in collaboration between the Brazilian Government, the Government of the Federal Republic of Germany, and the IAEA. As a consequence of the

The use of apoptosis in human lymphocytes peripheral as alternative methods in biological dosimetry of radiation effects from cobalt-60

International Nuclear Information System (INIS)

Lemes, Marisa

1997-01-01

Gamma rays affect cells in dose-response manner, resulting in cell death, as in cancer radiotherapy. The ionizing radiation acts by transferring energy, mainly by free radicals from water radiolysis that result in nucleic acid damage and other effects in lipids and proteins, The level of exposure is indirectly estimated by physical dosimetry, but the biological dosimetry can measure the direct radiation effect, mainly in post-dividing cells by classical cytogenetic approach. Recently, it was reported that irradiated cells develop an induced programmed death or apoptosis. With a biological dosimetric technique, we measured apoptotic cell fraction in 60 Co in vitro irradiated blood cells from voluntary healthy donors. The agarose gel electrophoresis showed a low sensitivity, because cell DNA presented the characteristic pattern only when the cells were exposed to 100 c Gy or more. Using a terminal DNA labeling technique we observed that the apoptotic cell fraction proportionally increases with irradiation. Similar sensitivity was observed when compared to classical cytogenetics (3 c Gy minimum detection level). These techniques are easier to perform, do not need cell culture and all cells, including interphase ones, can be analyzed, providing a good tool in biological dosimetry. (author)

Mapping biological systems to network systems

CERN Document Server

Rathore, Heena

2016-01-01

The book presents the challenges inherent in the paradigm shift of network systems from static to highly dynamic distributed systems – it proposes solutions that the symbiotic nature of biological systems can provide into altering networking systems to adapt to these changes. The author discuss how biological systems – which have the inherent capabilities of evolving, self-organizing, self-repairing and flourishing with time – are inspiring researchers to take opportunities from the biology domain and map them with the problems faced in network domain. The book revolves around the central idea of bio-inspired systems -- it begins by exploring why biology and computer network research are such a natural match. This is followed by presenting a broad overview of biologically inspired research in network systems -- it is classified by the biological field that inspired each topic and by the area of networking in which that topic lies. Each case elucidates how biological concepts have been most successfully ...

Transient impedance changes in venous endothelial monolayers as a biological radiation dosimetry response

Directory of Open Access Journals (Sweden)

Erik Fossum Young

2012-10-01

Full Text Available In March of 2011, a magnitude 9.0 earthquake and subsequent 14 m-high tsunami caused major damage to the Fukushima Daiichi nuclear power plant in Japan.  While cancer incidence in the radiation-exposed population is a logical concern, the complex effects of radiation on the heart and cardiovascular system are also of interest.  Immediate and early vascular radiation effects could be exploited as a dosimetry modality.  To test whether non-coronary vasculature exhibited transient perturbation in barrier function, video microscopy studies and Electric Cell Substrate Impedance Sensing technology were used to probe very subtle changes in primary human vascular endothelium.  Human umbilical vein endothelial cell (HUVEC monolayers exhibit a transient, statistically significant decrease (P = 0.017 in monolayer resistance 3 h after irradiation with 5.0 Gy of g rays.  Radiation induced perturbations in HUVEC monolayer permeability are similar in magnitude and kinetics to those observed in coronary arterial endothelium.  Therefore, at least two types of vasculature respond to radiation on ECIS arrays with an early transient disruption in permeability.  The finding supports the use of early passage HUVECs for use in bioelectric dosimetry studies of vasculature and suggests that permeability of vessels could potentially serve as a biological dosimetry tool.

FiBi - A French network of facilities for irradiation in biology: The organisation of the network and the research opportunities associated

International Nuclear Information System (INIS)

Gaillard-Lecanu, E.; Coffigny, H.; Poncy, J.L.; Authier, N.; Verrey, B.; Bailly, I.; Baldacchino, G.; Bordy, J.M.; Carriere, M.; Leplat, J.J.; Pin, S.; Pommeret, S.; Thuret, J.Y.; Renault, J.P.; Cortella, I.; Duval, D.; Khodja, H.; Testard, I.

2006-01-01

The Life Science Division of the Atomic Energy Commission has developed a national network of available irradiation facilities for biological studies. One aim is to optimise the irradiation of biological samples, through a compendium of existing facilities allowing for the preserving and the irradiation of these samples in good conditions, and for providing an appropriate and reliable dosimetry. Given the high cost of the facilities and their specialization (nature and precision of irradiation on a cell scale, dose and dose rate), closeness is no longer the only criteria of choice for biologists. Development is leaning towards the implementation of irradiation platforms gathering irradiation tools associated with specific methods belonging to biology: cell culture, molecular biology and even animal care houses. The aim is to be able to offer biologists the most appropriate experimental tools, and to modify them according to the changing needs of radiobiology. This work is currently in progress and the database is still not exhaustive and shall be implemented as and when new documents are drawn up and new facilities are opened. (author)

Radiation dosimetry and radiation biophysics

International Nuclear Information System (INIS)

Anon.

1981-01-01

Radiation dosimetry and radiation biophysics are two closely integrated programs whose joint purpose is to explore the connections between the primary physical events produced by radiation and their biological consequences in cellular systems. The radiation dosimetry program includes the theoretical description of primary events and their connection with the observable biological effects. This program also is concerned with the design and measurement of physical parameters used in theory or to support biological experiments. The radiation biophysics program tests and uses the theoretical developments for experimental design, and provides information for further theoretical development through experiments on cellular systems

Radiation dosimetry and radiation biophysics

International Nuclear Information System (INIS)

Anon.

1979-01-01

Radiation dosimetry and radiation biophysics are two closely integrated programs whose joint purpose is to explore the connections between the primary physical events produced by radiation and their biological consequences in cellular systems. The radiation dosimetry program includes the theoretical description of primary events and their connection with the observable biological effects. This program also is concerned with design and measurement of those physical parameters used in the theory or to support biological experiments. The radiation biophysics program tests and makes use of the theoretical developments for experimental design. Also, this program provides information for further theoretical development through experiments on cellular systems

Comparing biological networks via graph compression

Directory of Open Access Journals (Sweden)

Hayashida Morihiro

2010-09-01

Full Text Available Abstract Background Comparison of various kinds of biological data is one of the main problems in bioinformatics and systems biology. Data compression methods have been applied to comparison of large sequence data and protein structure data. Since it is still difficult to compare global structures of large biological networks, it is reasonable to try to apply data compression methods to comparison of biological networks. In existing compression methods, the uniqueness of compression results is not guaranteed because there is some ambiguity in selection of overlapping edges. Results This paper proposes novel efficient methods, CompressEdge and CompressVertices, for comparing large biological networks. In the proposed methods, an original network structure is compressed by iteratively contracting identical edges and sets of connected edges. Then, the similarity of two networks is measured by a compression ratio of the concatenated networks. The proposed methods are applied to comparison of metabolic networks of several organisms, H. sapiens, M. musculus, A. thaliana, D. melanogaster, C. elegans, E. coli, S. cerevisiae, and B. subtilis, and are compared with an existing method. These results suggest that our methods can efficiently measure the similarities between metabolic networks. Conclusions Our proposed algorithms, which compress node-labeled networks, are useful for measuring the similarity of large biological networks.

Dosimetry in life sciences

International Nuclear Information System (INIS)

1975-01-01

The uses of radiation in medicine and biology have grown in scope and diversity to make the Radiological Sciences a significant factor in both research and medical practice. Of critical importance in the applications and development of biomedical and radiological techniques is the precision with which the dose may be determined at all points of interest in the absorbing medium. This has developed as a result of efficacy of investigations in clinical radiation therapy, concern for patient safety and diagnostic accuracy in diagnostic radiology and the advent of clinical trials and research into the use of heavily ionizing radiations in biology and medicine. Since the last IAEA Symposium on Dosimetry Techniques applied to Agriculture, Industry, Biology and Medicine, held in Vienna in 1972, it has become increasingly clear that advances in the techniques and hardware of biomedical dosimetry have been rapid. It is for these reasons that this symposium was organized in a concerted effort to focus on the problems, developments and areas of further research in dosimetry in the Life Sciences. (author)

Dosimetry in life sciences

Energy Technology Data Exchange (ETDEWEB)

NONE

1975-06-15

The uses of radiation in medicine and biology have grown in scope and diversity to make the Radiological Sciences a significant factor in both research and medical practice. Of critical importance in the applications and development of biomedical and radiological techniques is the precision with which the dose may be determined at all points of interest in the absorbing medium. This has developed as a result of efficacy of investigations in clinical radiation therapy, concern for patient safety and diagnostic accuracy in diagnostic radiology and the advent of clinical trials and research into the use of heavily ionizing radiations in biology and medicine. Since the last IAEA Symposium on Dosimetry Techniques applied to Agriculture, Industry, Biology and Medicine, held in Vienna in 1972, it has become increasingly clear that advances in the techniques and hardware of biomedical dosimetry have been rapid. It is for these reasons that this symposium was organized in a concerted effort to focus on the problems, developments and areas of further research in dosimetry in the Life Sciences. (author)

Radiation protection dosimetry in medicine - Report of the working group n.9 of the European radiation dosimetry group (EURADOS) - coordinated network for radiation dosimetry (CONRAD - contract EC N) fp6-12684; Dosimetrie pour la radioprotection en milieu medical - rapport du groupe de travail n. 9 du European radiation dosimetry group (EURADOS) - coordinated netword for radiation dosimetry (CONRAD - contrat CE fp6-12684)

Energy Technology Data Exchange (ETDEWEB)

NONE

2009-07-01

This report present the results achieved within the frame of the work the WP 7 (Radiation Protection Dosimetry of Medical Staff) of the coordination action CONRAD (Coordinated Network for Radiation Dosimetry) funded through the 6. EU Framework Program. This action was coordinated by EURADOS (European Radiation Dosimetry Group). EURADOS is an organization founded in 1981 to advance the scientific understanding and the technical development of the dosimetry of ionising radiation in the fields of radiation protection, radiobiology, radiation therapy and medical diagnosis by promoting collaboration between European laboratories. WP7 coordinates and promotes European research for the assessment of occupational exposures to staff in therapeutic and diagnostic radiology workplaces. Research is coordinated through sub-groups covering three specific areas: 1. Extremity dosimetry in nuclear medicine and interventional radiology: this sub-group coordinates investigations in the specific fields of the hospitals and studies of doses to different parts of the hands, arms, legs and feet; 2. Practice of double dosimetry: this sub-group reviews and evaluates the different methods and algorithms for the use of dosemeters placed above and below lead aprons in large exposure during interventional radiology procedures, especially to determine effective doses to cardiologists during cardiac catheterization; and 3. Use of electronic personal dosemeters in interventional radiology: this sub-group coordinates investigations in laboratories and hospitals, and intercomparisons with passive dosemeters with the aim to enable the formulation of standards. (authors)

Modular analysis of biological networks.

Science.gov (United States)

Kaltenbach, Hans-Michael; Stelling, Jörg

2012-01-01

The analysis of complex biological networks has traditionally relied on decomposition into smaller, semi-autonomous units such as individual signaling pathways. With the increased scope of systems biology (models), rational approaches to modularization have become an important topic. With increasing acceptance of de facto modularity in biology, widely different definitions of what constitutes a module have sparked controversies. Here, we therefore review prominent classes of modular approaches based on formal network representations. Despite some promising research directions, several important theoretical challenges remain open on the way to formal, function-centered modular decompositions for dynamic biological networks.

Biological dosimetry in cases gives occupational high exposition to ionizing radiations

International Nuclear Information System (INIS)

Ramalho, Adriana T.; Costa, Maria Lucia P.; Oliveira, Monica S.; Silva, Francisco Cesar A.

1998-01-01

From 1983 the cytogenetics dosimetry method it has been used as routine in the IRD laboratory in the period 1983 at 1997 but a high exposition occupational case the physical dosimeters happened in Brazil they were investigated through the cytogenetics dosimetry technique. This technique is employ when the dosimetry personal marks a high dose to 100 mSv (0,1 Gy) that is the cut-off minimum detected in the dosimetry cytogenetics

Bibliographical database of radiation biological dosimetry and risk assessment: Part 1, through June 1988

Energy Technology Data Exchange (ETDEWEB)

Straume, T.; Ricker, Y.; Thut, M.

1988-08-29

This database was constructed to support research in radiation biological dosimetry and risk assessment. Relevant publications were identified through detailed searches of national and international electronic databases and through our personal knowledge of the subject. Publications were numbered and key worded, and referenced in an electronic data-retrieval system that permits quick access through computerized searches on publication number, authors, key words, title, year, and journal name. Photocopies of all publications contained in the database are maintained in a file that is numerically arranged by citation number. This report of the database is provided as a useful reference and overview. It should be emphasized that the database will grow as new citations are added to it. With that in mind, we arranged this report in order of ascending citation number so that follow-up reports will simply extend this document. The database cite 1212 publications. Publications are from 119 different scientific journals, 27 of these journals are cited at least 5 times. It also contains reference to 42 books and published symposia, and 129 reports. Information relevant to radiation biological dosimetry and risk assessment is widely distributed among the scientific literature, although a few journals clearly dominate. The four journals publishing the largest number of relevant papers are Health Physics, Mutation Research, Radiation Research, and International Journal of Radiation Biology. Publications in Health Physics make up almost 10% of the current database.

Bibliographical database of radiation biological dosimetry and risk assessment: Part 1, through June 1988

International Nuclear Information System (INIS)

Straume, T.; Ricker, Y.; Thut, M.

1988-01-01

This database was constructed to support research in radiation biological dosimetry and risk assessment. Relevant publications were identified through detailed searches of national and international electronic databases and through our personal knowledge of the subject. Publications were numbered and key worded, and referenced in an electronic data-retrieval system that permits quick access through computerized searches on publication number, authors, key words, title, year, and journal name. Photocopies of all publications contained in the database are maintained in a file that is numerically arranged by citation number. This report of the database is provided as a useful reference and overview. It should be emphasized that the database will grow as new citations are added to it. With that in mind, we arranged this report in order of ascending citation number so that follow-up reports will simply extend this document. The database cite 1212 publications. Publications are from 119 different scientific journals, 27 of these journals are cited at least 5 times. It also contains reference to 42 books and published symposia, and 129 reports. Information relevant to radiation biological dosimetry and risk assessment is widely distributed among the scientific literature, although a few journals clearly dominate. The four journals publishing the largest number of relevant papers are Health Physics, Mutation Research, Radiation Research, and International Journal of Radiation Biology. Publications in Health Physics make up almost 10% of the current database

In-situ fluorescence hybridization applied to biological dosimetry: contribution of automation to the counting of radio-induced chromosome aberrations

International Nuclear Information System (INIS)

Germain Thomas Roy, Laurence

1999-01-01

The frequency of chromosome aberrations on peripheral blood lymphocytes is a dose indicator in the case of ionizing radiations over-exposure. Stable chromosome aberrations (translocations, insertions) are visualized after labelling of some chromosomes using the fluorescence in-situ hybridization (FISH). The study of the use of the FISH technique in biological dosimetry is done with dose-effect curves. It seems that a bias is introduced during the observation of chromosome aberrations involving only 3 pairs of chromosomes. In order to avoid this bias, it would be useful to test the feasibility of using the multi-FISH technique in biological dosimetry. Moreover, this type of chromosome aberration changes with the type of irradiation. It is thus important to define the aberrations to be considered when the FISH technique is used. In order to reduce the time of image analysis, the CYTOGEN system, developed by IMSTAR company (Paris, France) has been adapted to the needs of biological dosimetry. This system allows to localize automatically the metaphases on the slide, which reduces the observation time by 2 or 4. An automatic detection protocol for chromosome aberrations has been implemented. It comprises the image capture, the contours detection and the classification of some chromosome aberrations. The different steps of this protocol have been tested in order to check that no bias is introduced by the automation. However, because radio-induced aberrations are rare events, it seems that a totally automatic system is not foreseeable. A semi-automatic analysis is more suitable. The use of the Slit-Scan technology (Laboratory of applied physics, Heidelberg, Germany) in biological dosimetry has been studied too. This technique allows to analyze rapidly a huge number of chromosomes. A good correlation has been observed between the dicentric frequency measured automatically and by manual counting. The system is under development and should be adapted to the detection of

Supporting Treatment Decisions in Patients with Differentiated Thyroid Carcinoma (DTC) under Radioiodine-131 Therapy: Role of Biological Dosimetry Assessment

International Nuclear Information System (INIS)

Fadel, A.M.; Chebel, G.M.; Di Giorgio, M.; Vallerga, M.B.; Taja, M.R.; Radl, A.; Bubniak, R.V.; Oneto, A.

2010-01-01

Radioiodine-131 therapy is applied in patients with differentiated thyroid carcinoma (DTC), within the therapeutic scheme following thyroidectomy, for the ablation of thyroid remnants and treatment of metastatic disease. Several approaches for the selection of a therapeutic dose were applied. The aim of this therapy is to achieve a lethal dose in the tumor tissue, without exceeding the dose of tolerance in healthy tissues (doses greater than 2 Gy in bone marrow could lead to myelotoxicity). In this work, the treatment protocol used incorporates the assessment by biological dosimetry (BD) for estimating doses to whole body and bone marrow, to tailor patient's treatment. Biological Dosimetry prospective studies conducted on samples from patients with cumulative activities, before and after each therapeutic administration, allows to evaluate DNA damage and repair capacity in peripheral blood lymphocytes. (authors)

The work programme of EURADOS on internal and external dosimetry.

Science.gov (United States)

Rühm, W; Bottollier-Depois, J F; Gilvin, P; Harrison, R; Knežević, Ž; Lopez, M A; Tanner, R; Vargas, A; Woda, C

2018-01-01

Since the early 1980s, the European Radiation Dosimetry Group (EURADOS) has been maintaining a network of institutions interested in the dosimetry of ionising radiation. As of 2017, this network includes more than 70 institutions (research centres, dosimetry services, university institutes, etc.), and the EURADOS database lists more than 500 scientists who contribute to the EURADOS mission, which is to promote research and technical development in dosimetry and its implementation into practice, and to contribute to harmonisation of dosimetry in Europe and its conformance with international practices. The EURADOS working programme is organised into eight working groups dealing with environmental, computational, internal, and retrospective dosimetry; dosimetry in medical imaging; dosimetry in radiotherapy; dosimetry in high-energy radiation fields; and harmonisation of individual monitoring. Results are published as freely available EURADOS reports and in the peer-reviewed scientific literature. Moreover, EURADOS organises winter schools and training courses on various aspects relevant for radiation dosimetry, and formulates the strategic research needs in dosimetry important for Europe. This paper gives an overview on the most important EURADOS activities. More details can be found at www.eurados.org .

Developments in biological dosimetry for the nuclear industry

Energy Technology Data Exchange (ETDEWEB)

Gale, K L; Boreham, D R; Maves, S; Morrison, D P [Atomic Energy of Canada Ltd., Chalk River, ON (Canada)

1996-12-31

The purpose of this program is to develop methods for providing estimates of radiation exposure based on changes in the cells/tissues of exposed individuals. This work arises from the need for independent measures of exposure of workers when standard dose measurements are unavailable or questionable. The radiation-induced changes that we propose to measure have been correlated with carcinogenesis. It follows that the methods used should also provide indications of the likely biological consequences of radiation exposure for an individual. The consequences of radiation exposure lie in the resolution of the radiation effects at the cellular level. Accordingly, it is at the cellular level that our attention is directed. More precisely, since the consequences of most concern, cancer induction and the induction of inherited diseases, are the result of changes to the genetic material of cells (the DNA), it is the measurement of effects on DNA that are being investigated as possible dose meters. Individuals are unique in terms of their DNA and differ in their cellular capacities to repair the damage from an ionizing radiation dose. Because of these features, not only do biological dosimetry tools offer us a means of measuring a dose at the individual level but may also provide us with a measure of the ultimate risk associated with a given exposure. (author). 7 refs., 2 tabs., 4 figs.

Developments in biological dosimetry for the nuclear industry

International Nuclear Information System (INIS)

Gale, K.L.; Boreham, D.R.; Maves, S.; Morrison, D.P.

1995-01-01

The purpose of this program is to develop methods for providing estimates of radiation exposure based on changes in the cells/tissues of exposed individuals. This work arises from the need for independent measures of exposure of workers when standard dose measurements are unavailable or questionable. The radiation-induced changes that we propose to measure have been correlated with carcinogenesis. It follows that the methods used should also provide indications of the likely biological consequences of radiation exposure for an individual. The consequences of radiation exposure lie in the resolution of the radiation effects at the cellular level. Accordingly, it is at the cellular level that our attention is directed. More precisely, since the consequences of most concern, cancer induction and the induction of inherited diseases, are the result of changes to the genetic material of cells (the DNA), it is the measurement of effects on DNA that are being investigated as possible dose meters. Individuals are unique in terms of their DNA and differ in their cellular capacities to repair the damage from an ionizing radiation dose. Because of these features, not only do biological dosimetry tools offer us a means of measuring a dose at the individual level but may also provide us with a measure of the ultimate risk associated with a given exposure. (author). 7 refs., 2 tabs., 4 figs

Identification of important nodes in directed biological networks: a network motif approach.

Directory of Open Access Journals (Sweden)

Pei Wang

Full Text Available Identification of important nodes in complex networks has attracted an increasing attention over the last decade. Various measures have been proposed to characterize the importance of nodes in complex networks, such as the degree, betweenness and PageRank. Different measures consider different aspects of complex networks. Although there are numerous results reported on undirected complex networks, few results have been reported on directed biological networks. Based on network motifs and principal component analysis (PCA, this paper aims at introducing a new measure to characterize node importance in directed biological networks. Investigations on five real-world biological networks indicate that the proposed method can robustly identify actually important nodes in different networks, such as finding command interneurons, global regulators and non-hub but evolutionary conserved actually important nodes in biological networks. Receiver Operating Characteristic (ROC curves for the five networks indicate remarkable prediction accuracy of the proposed measure. The proposed index provides an alternative complex network metric. Potential implications of the related investigations include identifying network control and regulation targets, biological networks modeling and analysis, as well as networked medicine.

Review of Biological Network Data and Its Applications

Directory of Open Access Journals (Sweden)

Donghyeon Yu

2013-12-01

Full Text Available Studying biological networks, such as protein-protein interactions, is key to understanding complex biological activities. Various types of large-scale biological datasets have been collected and analyzed with high-throughput technologies, including DNA microarray, next-generation sequencing, and the two-hybrid screening system, for this purpose. In this review, we focus on network-based approaches that help in understanding biological systems and identifying biological functions. Accordingly, this paper covers two major topics in network biology: reconstruction of gene regulatory networks and network-based applications, including protein function prediction, disease gene prioritization, and network-based genome-wide association study.

Biological dosimetry of ionizing radiation: Evaluation of the dose with cytogenetic methodologies by the construction of calibration curves

Science.gov (United States)

Zafiropoulos, Demetre; Facco, E.; Sarchiapone, Lucia

2016-09-01

In case of a radiation accident, it is well known that in the absence of physical dosimetry biological dosimetry based on cytogenetic methods is a unique tool to estimate individual absorbed dose. Moreover, even when physical dosimetry indicates an overexposure, scoring chromosome aberrations (dicentrics and rings) in human peripheral blood lymphocytes (PBLs) at metaphase is presently the most widely used method to confirm dose assessment. The analysis of dicentrics and rings in PBLs after Giemsa staining of metaphase cells is considered the most valid assay for radiation injury. This work shows that applying the fluorescence in situ hybridization (FISH) technique, using telomeric/centromeric peptide nucleic acid (PNA) probes in metaphase chromosomes for radiation dosimetry, could become a fast scoring, reliable and precise method for biological dosimetry after accidental radiation exposures. In both in vitro methods described above, lymphocyte stimulation is needed, and this limits the application in radiation emergency medicine where speed is considered to be a high priority. Using premature chromosome condensation (PCC), irradiated human PBLs (non-stimulated) were fused with mitotic CHO cells, and the yield of excess PCC fragments in Giemsa stained cells was scored. To score dicentrics and rings under PCC conditions, the necessary centromere and telomere detection of the chromosomes was obtained using FISH and specific PNA probes. Of course, a prerequisite for dose assessment in all cases is a dose-effect calibration curve. This work illustrates the various methods used; dose response calibration curves, with 95% confidence limits used to estimate dose uncertainties, have been constructed for conventional metaphase analysis and FISH. We also compare the dose-response curve constructed after scoring of dicentrics and rings using PCC combined with FISH and PNA probes. Also reported are dose response curves showing scored dicentrics and rings per cell, combining

Querying Large Biological Network Datasets

Science.gov (United States)

Gulsoy, Gunhan

2013-01-01

New experimental methods has resulted in increasing amount of genetic interaction data to be generated every day. Biological networks are used to store genetic interaction data gathered. Increasing amount of data available requires fast large scale analysis methods. Therefore, we address the problem of querying large biological network datasets.…

Causal biological network database: a comprehensive platform of causal biological network models focused on the pulmonary and vascular systems.

Science.gov (United States)

Boué, Stéphanie; Talikka, Marja; Westra, Jurjen Willem; Hayes, William; Di Fabio, Anselmo; Park, Jennifer; Schlage, Walter K; Sewer, Alain; Fields, Brett; Ansari, Sam; Martin, Florian; Veljkovic, Emilija; Kenney, Renee; Peitsch, Manuel C; Hoeng, Julia

2015-01-01

With the wealth of publications and data available, powerful and transparent computational approaches are required to represent measured data and scientific knowledge in a computable and searchable format. We developed a set of biological network models, scripted in the Biological Expression Language, that reflect causal signaling pathways across a wide range of biological processes, including cell fate, cell stress, cell proliferation, inflammation, tissue repair and angiogenesis in the pulmonary and cardiovascular context. This comprehensive collection of networks is now freely available to the scientific community in a centralized web-based repository, the Causal Biological Network database, which is composed of over 120 manually curated and well annotated biological network models and can be accessed at http://causalbionet.com. The website accesses a MongoDB, which stores all versions of the networks as JSON objects and allows users to search for genes, proteins, biological processes, small molecules and keywords in the network descriptions to retrieve biological networks of interest. The content of the networks can be visualized and browsed. Nodes and edges can be filtered and all supporting evidence for the edges can be browsed and is linked to the original articles in PubMed. Moreover, networks may be downloaded for further visualization and evaluation. Database URL: http://causalbionet.com © The Author(s) 2015. Published by Oxford University Press.

Network Analyses in Systems Biology: New Strategies for Dealing with Biological Complexity

DEFF Research Database (Denmark)

Green, Sara; Serban, Maria; Scholl, Raphael

2018-01-01

of biological networks using tools from graph theory to the application of dynamical systems theory to understand the behavior of complex biological systems. We show how network approaches support and extend traditional mechanistic strategies but also offer novel strategies for dealing with biological...... strategies? When and how can network and mechanistic approaches interact in productive ways? In this paper we address these questions by focusing on how biological networks are represented and analyzed in a diverse class of case studies. Our examples span from the investigation of organizational properties...

Cytogenetic Dosimetry: Applications in Preparedness for and Response to Radiation Emergencies

International Nuclear Information System (INIS)

2011-01-01

Cytogenetic dosimetry is recognized as a valuable dose assessment method which fills a gap in dosimetric technology, particularly when there are difficulties in interpreting the data, in cases where there is reason to believe that persons not wearing dosimeters have been exposed to radiation, in cases of claims for compensation for radiation injuries that are not supported by unequivocal dosimetric evidence, or in cases of exposure over an individual's working lifetime. The IAEA has maintained a long standing involvement in biological dosimetry commencing in 1978. This association has been through a sequence of coordinated research programmes (CRPs), the running of regional and national training courses, the sponsorship of individual training fellowships, and the provision of equipment to laboratories in Member States, establishing capabilities in biological dosimetry. From this has arisen the provision to Member States of advice regarding the best focus for research and suggestions for the most suitable techniques for future practice in biological dosimetry. One CRP resulted in the publication in 1986 of a manual, entitled Biological Dosimetry: Chromosomal Aberration Analysis for Dose Assessment (Technical Reports Series No. 260). This was superseded in 2001 by a revised second edition, Technical Reports Series No. 405. This present publication constitutes a third edition, with extensive updating to reflect the considerable advances that have been made in cytogenetic biological dosimetry during the past decade.

10 CFR 835.1304 - Nuclear accident dosimetry.

Science.gov (United States)

2010-01-01

...) Methods and equipment for analysis of biological materials; (3) A system of fixed nuclear accident... Nuclear accident dosimetry. (a) Installations possessing sufficient quantities of fissile material to... 10 Energy 4 2010-01-01 2010-01-01 false Nuclear accident dosimetry. 835.1304 Section 835.1304...

Biological transportation networks: Modeling and simulation

KAUST Repository

Albi, Giacomo

2015-09-15

We present a model for biological network formation originally introduced by Cai and Hu [Adaptation and optimization of biological transport networks, Phys. Rev. Lett. 111 (2013) 138701]. The modeling of fluid transportation (e.g., leaf venation and angiogenesis) and ion transportation networks (e.g., neural networks) is explained in detail and basic analytical features like the gradient flow structure of the fluid transportation network model and the impact of the model parameters on the geometry and topology of network formation are analyzed. We also present a numerical finite-element based discretization scheme and discuss sample cases of network formation simulations.

BiologicalNetworks 2.0 - an integrative view of genome biology data

Directory of Open Access Journals (Sweden)

Ponomarenko Julia

2010-12-01

Full Text Available Abstract Background A significant problem in the study of mechanisms of an organism's development is the elucidation of interrelated factors which are making an impact on the different levels of the organism, such as genes, biological molecules, cells, and cell systems. Numerous sources of heterogeneous data which exist for these subsystems are still not integrated sufficiently enough to give researchers a straightforward opportunity to analyze them together in the same frame of study. Systematic application of data integration methods is also hampered by a multitude of such factors as the orthogonal nature of the integrated data and naming problems. Results Here we report on a new version of BiologicalNetworks, a research environment for the integral visualization and analysis of heterogeneous biological data. BiologicalNetworks can be queried for properties of thousands of different types of biological entities (genes/proteins, promoters, COGs, pathways, binding sites, and other and their relations (interactions, co-expression, co-citations, and other. The system includes the build-pathways infrastructure for molecular interactions/relations and module discovery in high-throughput experiments. Also implemented in BiologicalNetworks are the Integrated Genome Viewer and Comparative Genomics Browser applications, which allow for the search and analysis of gene regulatory regions and their conservation in multiple species in conjunction with molecular pathways/networks, experimental data and functional annotations. Conclusions The new release of BiologicalNetworks together with its back-end database introduces extensive functionality for a more efficient integrated multi-level analysis of microarray, sequence, regulatory, and other data. BiologicalNetworks is freely available at http://www.biologicalnetworks.org.

Biological transportation networks: Modeling and simulation

KAUST Repository

Albi, Giacomo; Artina, Marco; Foransier, Massimo; Markowich, Peter A.

2015-01-01

We present a model for biological network formation originally introduced by Cai and Hu [Adaptation and optimization of biological transport networks, Phys. Rev. Lett. 111 (2013) 138701]. The modeling of fluid transportation (e.g., leaf venation

Communication on the structure of biological networks

Indian Academy of Sciences (India)

Introduction. Over the past few years, network science has drawn attention from a large number of ... The qualitative properties of biological networks cannot ... Here, we study the underlying undirected structure of empirical biological networks.

Measuring the evolutionary rewiring of biological networks.

Directory of Open Access Journals (Sweden)

Chong Shou

Full Text Available We have accumulated a large amount of biological network data and expect even more to come. Soon, we anticipate being able to compare many different biological networks as we commonly do for molecular sequences. It has long been believed that many of these networks change, or "rewire", at different rates. It is therefore important to develop a framework to quantify the differences between networks in a unified fashion. We developed such a formalism based on analogy to simple models of sequence evolution, and used it to conduct a systematic study of network rewiring on all the currently available biological networks. We found that, similar to sequences, biological networks show a decreased rate of change at large time divergences, because of saturation in potential substitutions. However, different types of biological networks consistently rewire at different rates. Using comparative genomics and proteomics data, we found a consistent ordering of the rewiring rates: transcription regulatory, phosphorylation regulatory, genetic interaction, miRNA regulatory, protein interaction, and metabolic pathway network, from fast to slow. This ordering was found in all comparisons we did of matched networks between organisms. To gain further intuition on network rewiring, we compared our observed rewirings with those obtained from simulation. We also investigated how readily our formalism could be mapped to other network contexts; in particular, we showed how it could be applied to analyze changes in a range of "commonplace" networks such as family trees, co-authorships and linux-kernel function dependencies.

On the Interplay between the Evolvability and Network Robustness in an Evolutionary Biological Network: A Systems Biology Approach

Science.gov (United States)

Chen, Bor-Sen; Lin, Ying-Po

2011-01-01

In the evolutionary process, the random transmission and mutation of genes provide biological diversities for natural selection. In order to preserve functional phenotypes between generations, gene networks need to evolve robustly under the influence of random perturbations. Therefore, the robustness of the phenotype, in the evolutionary process, exerts a selection force on gene networks to keep network functions. However, gene networks need to adjust, by variations in genetic content, to generate phenotypes for new challenges in the network’s evolution, ie, the evolvability. Hence, there should be some interplay between the evolvability and network robustness in evolutionary gene networks. In this study, the interplay between the evolvability and network robustness of a gene network and a biochemical network is discussed from a nonlinear stochastic system point of view. It was found that if the genetic robustness plus environmental robustness is less than the network robustness, the phenotype of the biological network is robust in evolution. The tradeoff between the genetic robustness and environmental robustness in evolution is discussed from the stochastic stability robustness and sensitivity of the nonlinear stochastic biological network, which may be relevant to the statistical tradeoff between bias and variance, the so-called bias/variance dilemma. Further, the tradeoff could be considered as an antagonistic pleiotropic action of a gene network and discussed from the systems biology perspective. PMID:22084563

Arrangement between the International Atomic Energy Agency and the World Health Organization concerning the establishment and operation of a network of Secondary Standard Dosimetry Laboratories

International Nuclear Information System (INIS)

1986-01-01

The International Atomic Energy Agency (IAEA) and the World Health Organization (WHO), recognizing that they have been co-operating in the operation of a network of Secondary Standard Dosimetry Laboratories (the Network), established pursuant to a Working Arrangement, dated 5 April 1976; and desiring to continue this co-operation in accordance with Article V of the relationship agreement concluded by IAEA and WHO in 1959; hereby enter a new arrangement to guide their work in operating the Network and providing assistance, when needed, to individual Secondary Standard Dosimetry Laboratories (SSDLs). The purpose of this Arrangement is to set forth responsibilities of IAEA and WHO in the operation and support of the Network and to establish criteria for SSDLs

New methodologies of biological dosimetry applied to human protection

International Nuclear Information System (INIS)

Catena, C.; Parasacchi, P.; Conti, D.; Righi, E.

1995-04-01

Biological dosimetry is a diagnostic methodology for the measurement of the individual dose absorbed in the case of accidental overexposition to ionizing radiation. It is demonstrated how in vitro radiobiological and chemobiological studies using cytogenetic methods (count of chromosomal aberrations and micronuclei) on human lymphocytes from healthy subjects and individuals undergoing radiotherapy or chemotherapy, as well as on lymphocytes of mammals other than man (comparative cytogenetics), can help to increase the basic radiobiological and chemobiological scientific information. Such information gives a valid contribution to understanding of the action of ionizing radiation or of pharmaceuticals on cells and, in return, can be of value to human radioprotection and chemoprotection. Cytogenetic studies can be summerized as follows: a) biodosimetry (estimate of dose received after accidental events); b) individual radiosensitivity (level of individual response); c) clinical radiobiology and chemobiology (individual response to radiopharmaceuticals, to radiotherapy and to chemopharmaceuticals); d) comparative radiobiology (cytogenetic studies on species other than man); e) animal model in the environmental surveillance

Chromosomal analysis and application of biological dosimetry in two cases of apparent over exposure

International Nuclear Information System (INIS)

Guerrero C, C.; Brena V, M.

2002-01-01

The gamma radiation calibration curve of 60 Co is used which was generated in the ININ Laboratory of Biology to calculate the exposure dose of two workers whose dosemeters marked values above of the limit allowed. The analysis indicates that in a first case, the aberrations frequency corresponded to the basal value, therefore there is not over exposure. The aberrations frequency of the second case is lightly above to the basal value and therefore the probability favors to what the physical dosimetry indicates. (Author)

Calibration Curves for Biological Dosimetry by Fluorescence In situ Hybridisation

International Nuclear Information System (INIS)

Stonati, L.; Durante, M.; Gensabella, G.; Gialanella, G.; Grossi, G.F.; Pugliese, M.; Scampoli, P.; Sgura, A.; Testa, A.; Tanzarella, C.

2001-01-01

Dose-response curves were measured for the induction of chromosomal aberrations in peripheral blood lymphocytes after acute exposure in vitro to 60 Co γ rays. Blood was obtained from four different healthy donors, and chromosomes were either observed at metaphase, following colcemid accumulation, or prematurely condensed by calyculin A. Cells were analysed in three different Italian laboratories. Chromosomes 1, 2, and 4 were painted, and simple-type interchanges between painted and non-painted chromosomes were scored in cells exposed in the dose range 0.1-3.0 Gy. The chemical-induced premature chromosome condensation method was also used combined with chromosome painting (chromosome 4 only) to determine calibration curves for high dose exposures (up to 20 Gy X rays). Calibration curves described in this paper will be used in our laboratories for biological dosimetry by fluorescence in situ hybridisation. (author)

Scientific days on electromagnetic fields: from dosimetry to human health - Conference proceedings; Journees scientifiques - Champs electromagnetiques: de la dosimetrie a la sante humaine - Recueil des resumes et presentations

Energy Technology Data Exchange (ETDEWEB)

Wiart, J.; Ghanmi, A.; Picon, O.; Conil, E.; Varsier, N.; Hadjem, A.; Sudret, B.; Magne, I.; Souques, M.; Gaudaire, F.; De Seze, R.; Jawad, O.; Lautru, D.; Dricot, J.M.; Horlin, F.; De Doncker, P.; Drissaoui, A.; Musy, F.; Nicolas, L.; Perrussel, R.; Scorretti, R.; Voyer, D.; Jala, M.; Moulines, E.; Levy-Leduc, C.; Mahfouz, Z.; Gati, A.; Fouad Hanna, V.; Leveque, P.; Arnaud-Cormos, D.; Zhadobov, M.; Jarrige, P.; Gaborit, G.; Kohler, S.; Ticaud, N.; Duvillaret, L.; Guelilia, Z.; Loison, R.; Gillard, R.; Laisne, A.; Favet, D.; Benadhira, R.; Mir, L.; Nadi, M.; Kourtiche, D.; Gazeau, F.; Wilhelm, C.; Delemotte, L.; Breton, M.; Tarek, M.; Marc-Vergnes, J.P.; Yardin, C.; Perrin, A.; Le Drean, Y.; Sauleau, R.; Lambrozo, J.; Selmaoui, B.; Ghosn, R.; Thuroczy, G.; Villegier, A.S.; Loos, N.; Brenet-Dufour, V.; Liabeuf, S.; Bach, V.; Moretti, D.; Lewis, N.; Garenne, A.; Poulletier De Gannes, F.; Haro, E.; Lagroye, I.; Bornat, Y.; Boutaib, Y.; Saighi, S.; Renaud, S.; Veyre, B.; Schuz, J.; Deltour, I.; Van Deventer, E.; Vecchia, P.; Merckel, O.; Bellaouel, A.; Demaret, P.; Donati, P.; Jovanovic, D.; Chauvin, S.; Desreumaux, J.P.; Fouquet, L.; Picard, D.; Massardier-Pilonchery, A.; Hours, M.; Bergeret, A.; Person, C.; Toutain, Y.; Butet, R.; Berrahma, K.; Balderelli, I.; Stelmaszyk, V.; Cretallaz, C.; Lamproglou, I.; Amourette, C.; Diserbo, M.; Fauquette, W.; Martigne, P.; Collin, A.; Lagroye, I.; Ait Aissa, S.; Hurtier, A.; Taxile, M.; Le Montagner, L.; Athane, A.; Duleu, S.; Percherancier, Y.; Geffard, M.; Ruffie, G.; Billaudel, B.; Veyret, B.; Pelletier, A.; Delanaud, S.; Libert, J.P.; Schunck, T.; Bieth, F.; Soubere Mahamoud, Y.; Le Quement, C.; Ferrand, G.; Le Guevel, R.; Carton, P.H.; Luong, M.; Tanvir, S.; Selmaoui, B.; Silva Pires-Antonietti, V.; Sonnet, P.; Pulvin, S.; Kuster, O.; Tetelin, C.

2012-04-15

This document brings together the available presentations (articles and slides) given at the URSI scientific days on electromagnetic fields: dosimetry, peoples' exposure, biological and health risks, risk management, and medical uses. 48 presentations are compiled in this document and deal with: 1 - Stochastic dosimetry: variability challenge; 2 - How to estimate the exposure to 50/60 Hz magnetic field in an epidemiological study?; 3 - Joint analysis of population exposure and radio coverage of GSM and UMTS mobile phone networks; 4 - Study of the specific energy absorption rate (SAR) sensitiveness to phone positions near the head for 2 GSM mobile phones; 5 - Statistical Study of SAR under Wireless Channel - Exposure in Indoor Environment; 6 - Uncertainty propagation in numerical dosimetry: how to reduce calculation costs?; 7 - Use of a simplified pregnant woman model for foetus exposure analysis; 8 - SAR estimation using multi-exposure with a mobile phone; 9 - State-of-the-art in experimental dosimetry (RF and pulses); 10 - Mm-waves dosimetry: issues, stakes and actual solutions; 11 - Use of DG-FDTD for a dosimetry calculation in a strongly multi-scale problem: determination of the eye-SAR near a HF/VHF vehicle-borne source; 12 - Dosimetric measurements with a fiber-type electro-optical sensor; 13 - Partial experimental evaluation of basic restrictions in the HF/VHF range; 14 - Repetitive trans-cranial magnetic stimulation Stimulation (rTMS) in psychiatry: present day situation and perspectives; 15 - Medical applications of electric fields; 16 - Measurements for life: new perspectives? 17 - Nano-particles and magnetic stimuli for medical imaging and therapy; 18 - Molecular Insights into electroporation and siRNA electro-transfer through model cell membranes; 19 - State of knowledge on electromagnetic fields hypersensitivity (HS-CEM); 20 - Experimentation methodology: from results to interpretation; 22 - Mm waves - update on biological effects at 40-60 GHz; 23

Mining biological networks from full-text articles.

Science.gov (United States)

Czarnecki, Jan; Shepherd, Adrian J

2014-01-01

The study of biological networks is playing an increasingly important role in the life sciences. Many different kinds of biological system can be modelled as networks; perhaps the most important examples are protein-protein interaction (PPI) networks, metabolic pathways, gene regulatory networks, and signalling networks. Although much useful information is easily accessible in publicly databases, a lot of extra relevant data lies scattered in numerous published papers. Hence there is a pressing need for automated text-mining methods capable of extracting such information from full-text articles. Here we present practical guidelines for constructing a text-mining pipeline from existing code and software components capable of extracting PPI networks from full-text articles. This approach can be adapted to tackle other types of biological network.

Studies with encapsulated 125I sources: dosimetry for determination of relative biological effectiveness

International Nuclear Information System (INIS)

Goldhagen, P.; Freeman, M.L.; Hall, E.J.

1981-01-01

During the past year, members of this laboratory have measured the Relative Biological Effectiveness (RBE) of photons from encapsulated 125 I sources (mean energy = 28.33 keV) using 661.6 keV 137 Cs gamma rays as a standard for comparison. These experiments were performed at clinically relevant dose rates and used reduction of the reproductive viability of mammalian cells as an endpoint. This section will discuss how dosimetry problems special to 125 I influence the design of the apparatus and will describe the ionization chamber to be used for measuring dose rates from both 125 I and 137 Cs photons

OWL Reasoning Framework over Big Biological Knowledge Network

Science.gov (United States)

Chen, Huajun; Chen, Xi; Gu, Peiqin; Wu, Zhaohui; Yu, Tong

2014-01-01

Recently, huge amounts of data are generated in the domain of biology. Embedded with domain knowledge from different disciplines, the isolated biological resources are implicitly connected. Thus it has shaped a big network of versatile biological knowledge. Faced with such massive, disparate, and interlinked biological data, providing an efficient way to model, integrate, and analyze the big biological network becomes a challenge. In this paper, we present a general OWL (web ontology language) reasoning framework to study the implicit relationships among biological entities. A comprehensive biological ontology across traditional Chinese medicine (TCM) and western medicine (WM) is used to create a conceptual model for the biological network. Then corresponding biological data is integrated into a biological knowledge network as the data model. Based on the conceptual model and data model, a scalable OWL reasoning method is utilized to infer the potential associations between biological entities from the biological network. In our experiment, we focus on the association discovery between TCM and WM. The derived associations are quite useful for biologists to promote the development of novel drugs and TCM modernization. The experimental results show that the system achieves high efficiency, accuracy, scalability, and effectivity. PMID:24877076

Neutron spectrometry and dosimetry by means of evolutive neural networks

International Nuclear Information System (INIS)

Ortiz R, J.M.; Martinez B, M.R.; Vega C, H.R.

2008-01-01

The artificial neural networks and the genetic algorithms are two relatively new areas of research, which have been subject to a growing interest during the last years. Both models are inspired by the nature, however, the neural networks are interested in the learning of a single individual, which is defined as fenotypic learning, while the evolutionary algorithms are interested in the adaptation of a population to a changing environment, that which is defined as genotypic learning. Recently, the use of the technology of neural networks has been applied with success in the area of the nuclear sciences, mainly in the areas of neutron spectrometry and dosimetry. The structure (network topology), as well as the learning parameters of a neural network, are factors that contribute in a significant way with the acting of the same one, however, it has been observed that the investigators in this area, carry out the selection of the network parameters through the essay and error technique, that which produces neural networks of poor performance and low generalization capacity. From the revised sources, it has been observed that the use of the evolutionary algorithms, seen as search techniques, it has allowed him to be possible to evolve and to optimize different properties of the neural networks, just as the initialization of the synaptic weights, the network architecture or the training algorithms without the human intervention. The objective of the present work is focused in analyzing the intersection of the neural networks and the evolutionary algorithms, analyzing like it is that the same ones can be used to help in the design processes and training of a neural network, this is, in the good selection of the structural parameters and of network learning, improving its generalization capacity, in such way that the same one is able to reconstruct in an efficient way neutron spectra and to calculate equivalent doses starting from the counting rates of a Bonner sphere

Foundations of ionizing radiation dosimetry

International Nuclear Information System (INIS)

Denisenko, O.N.; Pereslegin, I.A.

1985-01-01

Foundations of dosimetry in application to radiotherapy are presented. General characteristics of ionizing radiations and main characteristics of ionizing radiation sources, mostly used in radiotherapy, are given. Values and units for measuring ionizing radiation (activity of a radioactive substance, absorbed dose, exposure dose, integral dose and dose equivalent are considered. Different methods and instruments for ionizing radiation dosimetry are discussed. The attention is paid to the foundations of clinical dosimetry (representation of anatomo-topographic information, choice of radiation conditions, realization of radiation methods, corrections for a configuration and inhomogeneity of a patient's body, account of biological factors of radiation effects, instruments of dose field formation, control of irradiation procedure chosen)

Importance of dosimetry of irradiators for pre-clinical radiobiological experiments

International Nuclear Information System (INIS)

Vikram, Bhadrasain

2014-01-01

Importance of radiation dose in radiation biology has been increasingly recognized due to translational use of beyond 2Gy dose is in current practice. Hence, accurate dosimetry of biological irradiators is warranted. To address these problems and propose recommendations, the National Cancer Institute (NCI) along with the National Institute of Allergy and Infectious Diseases (NIAID) as well as the National Institute of Standards and Technology (NIST) highlighted a number of recommendations that will be presented in this talk that includes creating dosimetry standard operating procedures (SOPs) for both in-vitro as well as in-vivo experiments. Other recommendations include for journals (as well as to funding agencies) mandating the reporting of dosimetry of biological irradiators. (author)

Effect of contrast agent administration on consequences of dosimetry and biology in radiotherapy planning

International Nuclear Information System (INIS)

Lo, Ching-Jung; Yang, Pei-Ying; Chao, Tsi-Chian; Tu, Shu-Ju

2015-01-01

In the treatment planning of radiation therapy, patients may be administrated with contrast media in CT scanning to assist physicians for accurate delineation of the target or organs. However, contrast media are not used in patients during the treatment delivery. In particular, contrast media contain materials with high atomic numbers and dosimetric variations may occur between scenarios where contrast media are present in treatment planning and absent in treatment delivery. In this study we evaluate the effect of contrast media on the dosimetry and biological consequence. An analytical phantom based on AAPM TG 119 and five sets of CT images from clinical patients are included. Different techniques of treatment planning are considered, including 1-field AP, 2-field AP+PA, 4-field box, 7-field IMRT, and RapidArc. RapidArc is a recent technique of volumetric modulated arc therapy and is used in our study of contrast media in clinical scenarios. The effect of RapidArc on dosimetry and biological consequence for administration of contrast media in radiotherapy is not discussed previously in literature. It is shown that dose difference is reduced as the number of external beams is increased, suggesting RapidArc may be favored to be used in the treatment planning enhanced by contrast media. Linear trend lines are fitted for assessment of percent dose differences in the planning target volume versus concentrations of contrast media between plans where contrast media are present and absent, respectively

Calibration curves for biological dosimetry by drug-induced prematurely condensed chromosomes in human lymphocytes

International Nuclear Information System (INIS)

Kang, C. M.; Chung, H. C.; Cho, C. K.

2002-01-01

To develop the cytogenetic tool to detect chromosome damages after high dose exposure with 60 Coγ- rays, dose-response curves were measured for induction of prematurely condensed chromosomes (PCC) in peripheral lymphocytes. Blood was obtained from 10 different healthy donors, and given okadaic acid (OA) 500nM in cultured lymphocytes 1h after radiation exposure. Cells were analyzed by the frequencies of OA-induced PCC rings because it is difficult to obtain mitotic chromosomes using a conventional chromosome aberration (CA). PCC-rings were scored in cells exposed in the dose range of 0.2-16Gy. The frequency of the cells with PCC and the dose-response relationship for the yield of PCC rings were examined in the irradiated lymphocytes. The yield of PCC-rings increased with dose dependent-manner up to 16Gy. The observed dose-effect relationship for the percentage of cells with PCC-rings was calculated by linear-quadratic model. This technique can be applied to biological dosimetry of radiation exposures involving whole body irradiation to allow damaged chromosomes to be detected with great sensitivity. Detection of okadaic acid-induced PCC rings is a useful method up to 16Gy or more doses in estimating the absorbed doses of victims after high dose exposure. Calibration curves described in this paper will be used in our laboratory for biological dosimetry by PCC-ring after a high dose exposure

Exploring biological network structure with clustered random networks

Directory of Open Access Journals (Sweden)

Bansal Shweta

2009-12-01

Full Text Available Abstract Background Complex biological systems are often modeled as networks of interacting units. Networks of biochemical interactions among proteins, epidemiological contacts among hosts, and trophic interactions in ecosystems, to name a few, have provided useful insights into the dynamical processes that shape and traverse these systems. The degrees of nodes (numbers of interactions and the extent of clustering (the tendency for a set of three nodes to be interconnected are two of many well-studied network properties that can fundamentally shape a system. Disentangling the interdependent effects of the various network properties, however, can be difficult. Simple network models can help us quantify the structure of empirical networked systems and understand the impact of various topological properties on dynamics. Results Here we develop and implement a new Markov chain simulation algorithm to generate simple, connected random graphs that have a specified degree sequence and level of clustering, but are random in all other respects. The implementation of the algorithm (ClustRNet: Clustered Random Networks provides the generation of random graphs optimized according to a local or global, and relative or absolute measure of clustering. We compare our algorithm to other similar methods and show that ours more successfully produces desired network characteristics. Finding appropriate null models is crucial in bioinformatics research, and is often difficult, particularly for biological networks. As we demonstrate, the networks generated by ClustRNet can serve as random controls when investigating the impacts of complex network features beyond the byproduct of degree and clustering in empirical networks. Conclusion ClustRNet generates ensembles of graphs of specified edge structure and clustering. These graphs allow for systematic study of the impacts of connectivity and redundancies on network function and dynamics. This process is a key step in

Hierarchical thinking in network biology: the unbiased modularization of biochemical networks.

Science.gov (United States)

Papin, Jason A; Reed, Jennifer L; Palsson, Bernhard O

2004-12-01

As reconstructed biochemical reaction networks continue to grow in size and scope, there is a growing need to describe the functional modules within them. Such modules facilitate the study of biological processes by deconstructing complex biological networks into conceptually simple entities. The definition of network modules is often based on intuitive reasoning. As an alternative, methods are being developed for defining biochemical network modules in an unbiased fashion. These unbiased network modules are mathematically derived from the structure of the whole network under consideration.

Scientific days on electromagnetic fields: from dosimetry to human health - Conference proceedings

International Nuclear Information System (INIS)

Wiart, J.; Ghanmi, A.; Picon, O.; Conil, E.; Varsier, N.; Hadjem, A.; Sudret, B.; Magne, I.; Souques, M.; Gaudaire, F.; De Seze, R.; Jawad, O.; Lautru, D.; Dricot, J.M.; Horlin, F.; De Doncker, P.; Drissaoui, A.; Musy, F.; Nicolas, L.; Perrussel, R.; Scorretti, R.; Voyer, D.; Jala, M.; Moulines, E.; Levy-Leduc, C.; Mahfouz, Z.; Gati, A.; Fouad Hanna, V.; Leveque, P.; Arnaud-Cormos, D.; Zhadobov, M.; Jarrige, P.; Gaborit, G.; Kohler, S.; Ticaud, N.; Duvillaret, L.; Guelilia, Z.; Loison, R.; Gillard, R.; Laisne, A.; Favet, D.; Benadhira, R.; Mir, L.; Nadi, M.; Kourtiche, D.; Gazeau, F.; Wilhelm, C.; Delemotte, L.; Breton, M.; Tarek, M.; Marc-Vergnes, J.P.; Yardin, C.; Perrin, A.; Le Drean, Y.; Sauleau, R.; Lambrozo, J.; Selmaoui, B.; Ghosn, R.; Thuroczy, G.; Villegier, A.S.; Loos, N.; Brenet-Dufour, V.; Liabeuf, S.; Bach, V.; Moretti, D.; Lewis, N.; Garenne, A.; Poulletier De Gannes, F.; Haro, E.; Lagroye, I.; Bornat, Y.; Boutaib, Y.; Saighi, S.; Renaud, S.; Veyre, B.; Schuz, J.; Deltour, I.; Van Deventer, E.; Vecchia, P.; Merckel, O.; Bellaouel, A.; Demaret, P.; Donati, P.; Jovanovic, D.; Chauvin, S.; Desreumaux, J.P.; Fouquet, L.; Picard, D.; Massardier-Pilonchery, A.; Hours, M.; Bergeret, A.; Person, C.; Toutain, Y.; Butet, R.; Berrahma, K.; Balderelli, I.; Stelmaszyk, V.; Cretallaz, C.; Lamproglou, I.; Amourette, C.; Diserbo, M.; Fauquette, W.; Martigne, P.; Collin, A.; Lagroye, I.; Ait Aissa, S.; Hurtier, A.; Taxile, M.; Le Montagner, L.; Athane, A.; Duleu, S.; Percherancier, Y.; Geffard, M.; Ruffie, G.; Billaudel, B.; Veyret, B.; Pelletier, A.; Delanaud, S.; Libert, J.P.; Schunck, T.; Bieth, F.; Soubere Mahamoud, Y.; Le Quement, C.; Ferrand, G.; Le Guevel, R.; Carton, P.H.; Luong, M.; Tanvir, S.; Selmaoui, B.; Silva Pires-Antonietti, V.; Sonnet, P.; Pulvin, S.; Kuster, O.; Tetelin, C.

2012-04-01

This document brings together the available presentations (articles and slides) given at the URSI scientific days on electromagnetic fields: dosimetry, peoples' exposure, biological and health risks, risk management, and medical uses. 48 presentations are compiled in this document and deal with: 1 - Stochastic dosimetry: variability challenge; 2 - How to estimate the exposure to 50/60 Hz magnetic field in an epidemiological study?; 3 - Joint analysis of population exposure and radio coverage of GSM and UMTS mobile phone networks; 4 - Study of the specific energy absorption rate (SAR) sensitiveness to phone positions near the head for 2 GSM mobile phones; 5 - Statistical Study of SAR under Wireless Channel - Exposure in Indoor Environment; 6 - Uncertainty propagation in numerical dosimetry: how to reduce calculation costs?; 7 - Use of a simplified pregnant woman model for foetus exposure analysis; 8 - SAR estimation using multi-exposure with a mobile phone; 9 - State-of-the-art in experimental dosimetry (RF and pulses); 10 - Mm-waves dosimetry: issues, stakes and actual solutions; 11 - Use of DG-FDTD for a dosimetry calculation in a strongly multi-scale problem: determination of the eye-SAR near a HF/VHF vehicle-borne source; 12 - Dosimetric measurements with a fiber-type electro-optical sensor; 13 - Partial experimental evaluation of basic restrictions in the HF/VHF range; 14 - Repetitive trans-cranial magnetic stimulation Stimulation (rTMS) in psychiatry: present day situation and perspectives; 15 - Medical applications of electric fields; 16 - Measurements for life: new perspectives? 17 - Nano-particles and magnetic stimuli for medical imaging and therapy; 18 - Molecular Insights into electroporation and siRNA electro-transfer through model cell membranes; 19 - State of knowledge on electromagnetic fields hypersensitivity (HS-CEM); 20 - Experimentation methodology: from results to interpretation; 22 - Mm waves - update on biological effects at 40-60 GHz; 23

Canadian space agency discipline working group for space dosimetry and radiation science

International Nuclear Information System (INIS)

Waker, Anthony; Waller, Edward; Lewis, Brent; Bennett, Leslie; Conroy, Thomas

2008-01-01

Full text: One of the great technical challenges in the human and robotic exploration of space is the deleterious effect of radiation on humans and physical systems. The magnitude of this challenge is broadly understood in terms of the sources of radiation, however, a great deal remains to be done in the development of instrumentation, suitable for the space environment, which can provide real-time monitoring of the complex radiation fields encountered in space and a quantitative measure of potential biological risk. In order to meet these research requirements collaboration is needed between experimental nuclear instrumentation scientists, theoretical scientists working on numerical modeling techniques and radiation biologists. Under the auspices of the Canadian Space Agency such a collaborative body has been established as one of a number of Discipline Working Groups. Members of the Space Dosimetry and Radiation Science working group form a collaborative network across Canada including universities, government laboratories and the industrial sector. Three central activities form the core of the Space Dosimetry and Radiation Science DWG. An instrument sub-group is engaged in the development of instruments capable of gamma ray, energetic charged particle and neutron dosimetry including the ability to provide dosimetric information in real-time. A second sub-group is focused on computer modeling of space radiation fields in order to assess the performance of conceptual designs of detectors and dosimeters or the impact of radiation on cellular and sub-cellular biological targets and a third sub-group is engaged in the study of the biological effects of space radiation and the potential of biomarkers as a method of assessing radiation impact on humans. Many working group members are active in more than one sub-group facilitating communication throughout the whole network. A summary progress-report will be given of the activities of the Discipline Working Group and the

Network Reconstruction of Dynamic Biological Systems

OpenAIRE

Asadi, Behrang

2013-01-01

Inference of network topology from experimental data is a central endeavor in biology, since knowledge of the underlying signaling mechanisms a requirement for understanding biological phenomena. As one of the most important tools in bioinformatics area, development of methods to reconstruct biological networks has attracted remarkable attention in the current decade. Integration of different data types can lead to remarkable improvements in our ability to identify the connectivity of differe...

BioNSi: A Discrete Biological Network Simulator Tool.

Science.gov (United States)

Rubinstein, Amir; Bracha, Noga; Rudner, Liat; Zucker, Noga; Sloin, Hadas E; Chor, Benny

2016-08-05

Modeling and simulation of biological networks is an effective and widely used research methodology. The Biological Network Simulator (BioNSi) is a tool for modeling biological networks and simulating their discrete-time dynamics, implemented as a Cytoscape App. BioNSi includes a visual representation of the network that enables researchers to construct, set the parameters, and observe network behavior under various conditions. To construct a network instance in BioNSi, only partial, qualitative biological data suffices. The tool is aimed for use by experimental biologists and requires no prior computational or mathematical expertise. BioNSi is freely available at http://bionsi.wix.com/bionsi , where a complete user guide and a step-by-step manual can also be found.

A generic algorithm for layout of biological networks.

Science.gov (United States)

Schreiber, Falk; Dwyer, Tim; Marriott, Kim; Wybrow, Michael

2009-11-12

Biological networks are widely used to represent processes in biological systems and to capture interactions and dependencies between biological entities. Their size and complexity is steadily increasing due to the ongoing growth of knowledge in the life sciences. To aid understanding of biological networks several algorithms for laying out and graphically representing networks and network analysis results have been developed. However, current algorithms are specialized to particular layout styles and therefore different algorithms are required for each kind of network and/or style of layout. This increases implementation effort and means that new algorithms must be developed for new layout styles. Furthermore, additional effort is necessary to compose different layout conventions in the same diagram. Also the user cannot usually customize the placement of nodes to tailor the layout to their particular need or task and there is little support for interactive network exploration. We present a novel algorithm to visualize different biological networks and network analysis results in meaningful ways depending on network types and analysis outcome. Our method is based on constrained graph layout and we demonstrate how it can handle the drawing conventions used in biological networks. The presented algorithm offers the ability to produce many of the fundamental popular drawing styles while allowing the exibility of constraints to further tailor these layouts.

Biological in vivo dosimetry with an external measuring technique under application of a labelled DNA-precursor (iodine-125-desoxyuridine)

International Nuclear Information System (INIS)

Porschen, W.; Zamboglou, N.; Muehlensiepen, H.; Feinendegen, L.E.

1976-01-01

The depression of the incorporation rate of IDU in the whole body or in the bone marrow is a sensitive indicator for a whole-body irradiation. It was found that the maximum effect is observed some 4 hours after irradiation. For this reason, bone marrow cells were labelled in vitro with IDU 4 hours after whole-body irradiation. This method proved to be extraordinarily sensitive and resulted in reproducible effects which occurred already at doses below 5 rad. All the other biological methods of dosimetry known so far are less sensitive. Although the theory explaining these results is not yet fully clarified, this method of dosimetry appears to offer practical possibilities of application. (orig.) [de

Cytogenetic Dosimetry: Applications in Preparedness for and Response to Radiation Emergencies (Spanish Edition)

International Nuclear Information System (INIS)

2014-01-01

Cytogenetic dosimetry is recognized as a valuable dose assessment method which fills a gap in dosimetric technology, particularly when there are difficulties in interpreting the data, in cases where there is reason to believe that persons not wearing dosimeters have been exposed to radiation, in cases of claims for compensation for radiation injuries that are not supported by unequivocal dosimetric evidence, or in cases of exposure over an individual’s working lifetime. The IAEA has maintained a long standing involvement in biological dosimetry commencing in 1978. This association has been through a sequence of coordinated research programmes (CRPs), the running of regional and national training courses, the sponsorship of individual training fellowships, and the provision of equipment to laboratories in Member States, establishing capabilities in biological dosimetry. From this has arisen the provision to Member States of advice regarding the best focus for research and suggestions for the most suitable techniques for future practice in biological dosimetry. One CRP resulted in the publication in 1986 of a manual, entitled Biological Dosimetry: Chromosomal Aberration Analysis for Dose Assessment (Technical Reports Series No. 260). This was superseded in 2001 by a revised second edition, Technical Reports Series No. 405. This present publication constitutes a third edition, with extensive updating to reflect the considerable advances that have been made in cytogenetic biological dosimetry during the past decade

Cytogenetic Dosimetry: Applications in Preparedness for and Response to Radiation Emergencies (Arabic Edition)

International Nuclear Information System (INIS)

2014-01-01

Cytogenetic dosimetry is recognized as a valuable dose assessment method which fills a gap in dosimetric technology, particularly when there are difficulties in interpreting the data, in cases where there is reason to believe that persons not wearing dosimeters have been exposed to radiation, in cases of claims for compensation for radiation injuries that are not supported by unequivocal dosimetric evidence, or in cases of exposure over an individual's working lifetime. The IAEA has maintained a long standing involvement in biological dosimetry commencing in 1978. This association has been through a sequence of coordinated research programmes (CRPs), the running of regional and national training courses, the sponsorship of individual training fellowships, and the provision of equipment to laboratories in Member States, establishing capabilities in biological dosimetry. From this has arisen the provision to Member States of advice regarding the best focus for research and suggestions for the most suitable techniques for future practice in biological dosimetry. One CRP resulted in the publication in 1986 of a manual, entitled Biological Dosimetry: Chromosomal Aberration Analysis for Dose Assessment (Technical Reports Series No. 260). This was superseded in 2001 by a revised second edition, Technical Reports Series No. 405. This present publication constitutes a third edition, with extensive updating to reflect the considerable advances that have been made in cytogenetic biological dosimetry during the past decade

Cytogenetic Dosimetry: Applications in Preparedness for and Response to Radiation Emergencies (Russian Edition)

International Nuclear Information System (INIS)

2014-01-01

Cytogenetic dosimetry is recognized as a valuable dose assessment method which fills a gap in dosimetric technology, particularly when there are difficulties in interpreting the data, in cases where there is reason to believe that persons not wearing dosimeters have been exposed to radiation, in cases of claims for compensation for radiation injuries that are not supported by unequivocal dosimetric evidence, or in cases of exposure over an individual's working lifetime. The IAEA has maintained a long standing involvement in biological dosimetry commencing in 1978. This association has been through a sequence of coordinated research programmes (CRPs), the running of regional and national training courses, the sponsorship of individual training fellowships, and the provision of equipment to laboratories in Member States, establishing capabilities in biological dosimetry. From this has arisen the provision to Member States of advice regarding the best focus for research and suggestions for the most suitable techniques for future practice in biological dosimetry. One CRP resulted in the publication in 1986 of a manual, entitled Biological Dosimetry: Chromosomal Aberration Analysis for Dose Assessment (Technical Reports Series No. 260). This was superseded in 2001 by a revised second edition, Technical Reports Series No. 405. This present publication constitutes a third edition, with extensive updating to reflect the considerable advances that have been made in cytogenetic biological dosimetry during the past decade

Cytogenetic Dosimetry: Applications in Preparedness for and Response to Radiation Emergencies (Chinese Edition)

International Nuclear Information System (INIS)

2015-01-01

Cytogenetic dosimetry is recognized as a valuable dose assessment method which fills a gap in dosimetric technology, particularly when there are difficulties in interpreting the data, in cases where there is reason to believe that persons not wearing dosimeters have been exposed to radiation, in cases of claims for compensation for radiation injuries that are not supported by unequivocal dosimetric evidence, or in cases of exposure over an individual's working lifetime. The IAEA has maintained a long standing involvement in biological dosimetry commencing in 1978. This association has been through a sequence of coordinated research programmes (CRPs), the running of regional and national training courses, the sponsorship of individual training fellowships, and the provision of equipment to laboratories in Member States, establishing capabilities in biological dosimetry. From this has arisen the provision to Member States of advice regarding the best focus for research and suggestions for the most suitable techniques for future practice in biological dosimetry. One CRP resulted in the publication in 1986 of a manual, entitled Biological Dosimetry: Chromosomal Aberration Analysis for Dose Assessment (Technical Reports Series No. 260). This was superseded in 2001 by a revised second edition, Technical Reports Series No. 405. This present publication constitutes a third edition, with extensive updating to reflect the considerable advances that have been made in cytogenetic biological dosimetry during the past decade

Cytogenetic Dosimetry: Applications in Preparedness for and Response to Radiation Emergencies (French Edition)

International Nuclear Information System (INIS)

2013-01-01

Cytogenetic dosimetry is recognized as a valuable dose assessment method which fills a gap in dosimetric technology, particularly when there are difficulties in interpreting the data, in cases where there is reason to believe that persons not wearing dosimeters have been exposed to radiation, in cases of claims for compensation for radiation injuries that are not supported by unequivocal dosimetric evidence, or in cases of exposure over an individual's working lifetime. The IAEA has maintained a long standing involvement in biological dosimetry commencing in 1978. This association has been through a sequence of coordinated research programmes (CRPs), the running of regional and national training courses, the sponsorship of individual training fellowships, and the provision of equipment to laboratories in Member States, establishing capabilities in biological dosimetry. From this has arisen the provision to Member States of advice regarding the best focus for research and suggestions for the most suitable techniques for future practice in biological dosimetry. One CRP resulted in the publication in 1986 of a manual, entitled Biological Dosimetry: Chromosomal Aberration Analysis for Dose Assessment (Technical Reports Series No. 260). This was superseded in 2001 by a revised second edition, Technical Reports Series No. 405. This present publication constitutes a third edition, with extensive updating to reflect the considerable advances that have been made in cytogenetic biological dosimetry during the past decade

Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks.

Science.gov (United States)

Tian, Ye; Zhang, Bai; Hoffman, Eric P; Clarke, Robert; Zhang, Zhen; Shih, Ie-Ming; Xuan, Jianhua; Herrington, David M; Wang, Yue

2014-07-24

Modeling biological networks serves as both a major goal and an effective tool of systems biology in studying mechanisms that orchestrate the activities of gene products in cells. Biological networks are context-specific and dynamic in nature. To systematically characterize the selectively activated regulatory components and mechanisms, modeling tools must be able to effectively distinguish significant rewiring from random background fluctuations. While differential networks cannot be constructed by existing knowledge alone, novel incorporation of prior knowledge into data-driven approaches can improve the robustness and biological relevance of network inference. However, the major unresolved roadblocks include: big solution space but a small sample size; highly complex networks; imperfect prior knowledge; missing significance assessment; and heuristic structural parameter learning. To address these challenges, we formulated the inference of differential dependency networks that incorporate both conditional data and prior knowledge as a convex optimization problem, and developed an efficient learning algorithm to jointly infer the conserved biological network and the significant rewiring across different conditions. We used a novel sampling scheme to estimate the expected error rate due to "random" knowledge. Based on that scheme, we developed a strategy that fully exploits the benefit of this data-knowledge integrated approach. We demonstrated and validated the principle and performance of our method using synthetic datasets. We then applied our method to yeast cell line and breast cancer microarray data and obtained biologically plausible results. The open-source R software package and the experimental data are freely available at http://www.cbil.ece.vt.edu/software.htm. Experiments on both synthetic and real data demonstrate the effectiveness of the knowledge-fused differential dependency network in revealing the statistically significant rewiring in biological

Radiotherapy Based On α Emitting Radionuclides: Geant4 For Dosimetry And Micro-/Nano-Dosimetry

International Nuclear Information System (INIS)

Guatelli, Susanna

2013-01-01

Possible physics approaches to evaluate the efficacy of TAT are dosimetry, microdosimetry and nanodosimetry. Dosimetry is adequate when mean absorbed dose to a macroscopic target volume is important to understand the biological effect of radiation. General purpose Monte Carlo (MC) codes, based on condensed history approach, are a very useful, cost effective tool to solve dosimetric problems. The condensed history approach is based on the use of multiple scattering theories to calculate the energy losses and angular changes in the direction of the particle. The short α particle range and high LET make the microdosimetric approach more suitable than dosimetry to study TAT from first physics principles, as this approach takes into account the stochastic nature of energy deposition at cellular level

Reconstruction of biological networks based on life science data integration.

Science.gov (United States)

Kormeier, Benjamin; Hippe, Klaus; Arrigo, Patrizio; Töpel, Thoralf; Janowski, Sebastian; Hofestädt, Ralf

2010-10-27

For the implementation of the virtual cell, the fundamental question is how to model and simulate complex biological networks. Therefore, based on relevant molecular database and information systems, biological data integration is an essential step in constructing biological networks. In this paper, we will motivate the applications BioDWH--an integration toolkit for building life science data warehouses, CardioVINEdb--a information system for biological data in cardiovascular-disease and VANESA--a network editor for modeling and simulation of biological networks. Based on this integration process, the system supports the generation of biological network models. A case study of a cardiovascular-disease related gene-regulated biological network is also presented.

Dosimetry in dentistry.

Science.gov (United States)

Asha, M L; Chatterjee, Ingita; Patil, Preeti; Naveen, S

2015-01-01

The purpose of this paper was to review various dosimeters used in dentistry and the cumulative results of various studies done with various dosimeters. Several relevant PubMed indexed articles from 1999 to 2013 were electronically searched by typing "dosimeters", "dosimeters in dentistry", "properties of dosimeters", "thermoluminescent and optically stimulated dosimeters", "recent advancements in dosimetry in dentistry." The searches were limited to articles in English to prepare a concise review on dental dosimetry. Titles and abstracts were screened, and articles that fulfilled the criteria of use of dosimeters in dental applications were selected for a full-text reading. Article was divided into four groups: (1) Biological effects of radiation, (2) properties of dosimeters, (3) types of dosimeters and (4) results of various studies using different dosimeters. The present review on dosimetry based on various studies done with dosimeters revealed that, with the advent of radiographic technique the effective dose delivered is low. Therefore, selection of radiological technique plays an important role in dental dose delivery.

Biological dosimetry in case of combined radiation injuries. Biologicheskaya dozimetriya pri kombinirovannykh radiatsionnykh porazheniyakh

Energy Technology Data Exchange (ETDEWEB)

Vladimirov, V G; Teslenko, V M

1990-11-01

The state of biological dosimetry methods and prospects for their development are considered. Attention is paid to biological indicators of radiation injuries caused by nuclear weapons. It is noted, that determination of the number of lymphocytes in the blood in case of combined radiation injuries should be concerned with great care and in each case the analysis results should reffered to critically and supported by the data from other investigations. Promissing are the methods related to dermination of reticulocyte number in the peripheral blood within the irradiation dose range, causing bone marrow form of radiation syndrome, method of leukocyte adhesion and some other methods based on the change of biophysical caracteristics of cell membranes. To increase the information efficiency it is necessary to combine these methods with the methods, based on genetic change registration, and to develop a combined method.

Controllability and observability of Boolean networks arising from biology

Science.gov (United States)

Li, Rui; Yang, Meng; Chu, Tianguang

2015-02-01

Boolean networks are currently receiving considerable attention as a computational scheme for system level analysis and modeling of biological systems. Studying control-related problems in Boolean networks may reveal new insights into the intrinsic control in complex biological systems and enable us to develop strategies for manipulating biological systems using exogenous inputs. This paper considers controllability and observability of Boolean biological networks. We propose a new approach, which draws from the rich theory of symbolic computation, to solve the problems. Consequently, simple necessary and sufficient conditions for reachability, controllability, and observability are obtained, and algorithmic tests for controllability and observability which are based on the Gröbner basis method are presented. As practical applications, we apply the proposed approach to several different biological systems, namely, the mammalian cell-cycle network, the T-cell activation network, the large granular lymphocyte survival signaling network, and the Drosophila segment polarity network, gaining novel insights into the control and/or monitoring of the specific biological systems.

Dosimetry; La dosimetrie

Energy Technology Data Exchange (ETDEWEB)

Le Couteulx, I.; Apretna, D.; Beaugerie, M.F. [Electricite de France (EDF), 75 - Paris (France)] [and others

2003-07-01

Eight articles treat the dosimetry. Two articles evaluate the radiation doses in specific cases, dosimetry of patients in radiodiagnosis, three articles are devoted to detectors (neutrons and x and gamma radiations) and a computer code to build up the dosimetry of an accident due to an external exposure. (N.C.)

Development of technology for biological dosimetry -A study on the radiation and environmental safety-

International Nuclear Information System (INIS)

Lee, Kang Suk; Cheon, Ki Jeong; Kim, Kook Chan; Kim, Jin Kyu; Kim, Sang Bok; Kim, In Kyu; Park, Hyo Kook

1994-07-01

α-amylase showed a significant increase in its activity when exposed to radiation of 0.1 Gy. However it had no relationship with radiation dose. Enzyme activities in liver tissue showed similar changes to those in serum. Among others, changes in acid phosphatase activity were highly related to radiation dose. Of acute phase proteins in serum, CRP, ceruloplasmin and haptoglobin positively responded to radiation while albumin did negatively. ELISA proved to be an efficient method to detect changes in serum protein level. Finally the measurements of changes in APRs using ELISA could provide an useful tools for biological dosimetry. (Author)

Networks in Cell Biology

Science.gov (United States)

Buchanan, Mark; Caldarelli, Guido; De Los Rios, Paolo; Rao, Francesco; Vendruscolo, Michele

2010-05-01

Introduction; 1. Network views of the cell Paolo De Los Rios and Michele Vendruscolo; 2. Transcriptional regulatory networks Sarath Chandra Janga and M. Madan Babu; 3. Transcription factors and gene regulatory networks Matteo Brilli, Elissa Calistri and Pietro Lió; 4. Experimental methods for protein interaction identification Peter Uetz, Björn Titz, Seesandra V. Rajagopala and Gerard Cagney; 5. Modeling protein interaction networks Francesco Rao; 6. Dynamics and evolution of metabolic networks Daniel Segré; 7. Hierarchical modularity in biological networks: the case of metabolic networks Erzsébet Ravasz Regan; 8. Signalling networks Gian Paolo Rossini; Appendix 1. Complex networks: from local to global properties D. Garlaschelli and G. Caldarelli; Appendix 2. Modelling the local structure of networks D. Garlaschelli and G. Caldarelli; Appendix 3. Higher-order topological properties S. Ahnert, T. Fink and G. Caldarelli; Appendix 4. Elementary mathematical concepts A. Gabrielli and G. Caldarelli; References.

Reconstruction of biological networks based on life science data integration

Directory of Open Access Journals (Sweden)

Kormeier Benjamin

2010-06-01

Full Text Available For the implementation of the virtual cell, the fundamental question is how to model and simulate complex biological networks. Therefore, based on relevant molecular database and information systems, biological data integration is an essential step in constructing biological networks. In this paper, we will motivate the applications BioDWH - an integration toolkit for building life science data warehouses, CardioVINEdb - a information system for biological data in cardiovascular-disease and VANESA- a network editor for modeling and simulation of biological networks. Based on this integration process, the system supports the generation of biological network models. A case study of a cardiovascular-disease related gene-regulated biological network is also presented.

Biological dosimetry of heavy ion induced chromosome lesions in human peripheral blood lymphocytes of different healthy donors

International Nuclear Information System (INIS)

Groesser, T.; Rydberg, B.; Ritter, S.; Hessel, P.; Kraft, G.

2003-01-01

Full text: In the presented work the effect of sparsely ionizing X-rays or densely ionizing carbon ions on human peripheral blood lymphocytes (PBL) from healthy donors regarding the fluctuations in radiosensitivity within the same donor and between different donors was examined. This is not only of special interest for physicians and radiation biologists but also plays an important role in space flights because such fluctuations in the radiation response would reduce the accuracy of the biological dosimetry. In this context, biological changes in the aberration rate of metaphase cells as well as in cell proliferation and the mitotic index were measured. Since chromosome analyses are presently the most powerful biological method to quantify radiation exposure, the study focused on the measurements of chromosome aberrations in first-metaphase cells. The investigations showed that the aberration yield after 400 MeV/u carbon ion exposure (LET = 11 keV/micrometer) was higher than after X-irradiation. The aberration yield in first mitotic cells as well as the proportion of damaged cells was stable over the examined period up to 72h after exposure to X-rays or carbon ions. Furthermore, the results of the presented work revealed pronounced fluctuations in the measured parameters in the same donor as well as between different donors. If the dose effect curves of such parameters were used as calibration curves for radiation dose assessment these fluctuations will decrease their potential of use for dose estimation. This demonstrates that a general calibration curve for dose assessment might not be sufficiently precise and individual calibration curves might improve the accuracy of the biological dosimetry

Node fingerprinting: an efficient heuristic for aligning biological networks.

Science.gov (United States)

Radu, Alex; Charleston, Michael

2014-10-01

With the continuing increase in availability of biological data and improvements to biological models, biological network analysis has become a promising area of research. An emerging technique for the analysis of biological networks is through network alignment. Network alignment has been used to calculate genetic distance, similarities between regulatory structures, and the effect of external forces on gene expression, and to depict conditional activity of expression modules in cancer. Network alignment is algorithmically complex, and therefore we must rely on heuristics, ideally as efficient and accurate as possible. The majority of current techniques for network alignment rely on precomputed information, such as with protein sequence alignment, or on tunable network alignment parameters, which may introduce an increased computational overhead. Our presented algorithm, which we call Node Fingerprinting (NF), is appropriate for performing global pairwise network alignment without precomputation or tuning, can be fully parallelized, and is able to quickly compute an accurate alignment between two biological networks. It has performed as well as or better than existing algorithms on biological and simulated data, and with fewer computational resources. The algorithmic validation performed demonstrates the low computational resource requirements of NF.

Analysis and assessment of the detriment in interventional radiology using biological dosimetry methods

International Nuclear Information System (INIS)

Montoro, A.; Almonacid, M.; Villaescusa, J.I.; Barquinero, J.F.; Rodriguez, P.; Barrios, L.; Verdu, G.; Ramos, M.

2006-01-01

Interventional radiologist and staff members usually are exposed to high levels of scattered radiation. As a result, the exposition to radiation procedures can produce detrimental effects that we would have to know. Effective dose is the quantity that better estimates the radiation risk. For this study we have realized an estimation of the radiological detriment to exposed workers of the Hospital la Fe de Valencia. For it, have been used physical doses registered in detectors T.L.D., and doses estimated by biological dosimetry in lymphocytes of peripheral blood. There has been estimated for every case the probability of effect of skin cancer and of non-solid cancers (leukaemia, lymphoma and myeloma), being compared with the baseline probability of natural effect. Biological doses were obtained by extrapolating the yield of dicentrics and translocations to their respective dose -effect curves. The discrepancies observed between physically recorded doses and biological estimated doses indicate that workers did not always wear their dosimeters or the dosimeters were not always in the radiation field. Cytogenetic studies should be extended to more workers to assess the risk derived from their occupational exposure. (authors)

Analysis and assessment of the detriment in interventional radiology using biological dosimetry methods

Energy Technology Data Exchange (ETDEWEB)

Montoro, A.; Almonacid, M.; Villaescusa, J.I. [Hospital Univ. la Fe de Valen cian, Servicio de Proteccion Radiologica, Valencia (Spain); Barquinero, J.F.; Rodriguez, P. [Universitat Autonom a de Barcelona, Servicio de Dosimetria Biologica, Unidad de Antropologia, Departamento de Biologia Animal, Vegetal y Ecologia., Barcelona (Spain); Barrios, L. [Universidad Autonoma de Barcelona, Dept. de Biologia Celular y Fisiologia. Unidad de Biologia Celular, Barcelona (Spain); Verdu, G.; Ramos, M. [Universidad Politecnica de Valencia, Dept. de Ingenieria Quimica y Nuclear, Valencia, (Spain)

2006-07-01

Interventional radiologist and staff members usually are exposed to high levels of scattered radiation. As a result, the exposition to radiation procedures can produce detrimental effects that we would have to know. Effective dose is the quantity that better estimates the radiation risk. For this study we have realized an estimation of the radiological detriment to exposed workers of the Hospital la Fe de Valencia. For it, have been used physical doses registered in detectors T.L.D., and doses estimated by biological dosimetry in lymphocytes of peripheral blood. There has been estimated for every case the probability of effect of skin cancer and of non-solid cancers (leukaemia, lymphoma and myeloma), being compared with the baseline probability of natural effect. Biological doses were obtained by extrapolating the yield of dicentrics and translocations to their respective dose -effect curves. The discrepancies observed between physically recorded doses and biological estimated doses indicate that workers did not always wear their dosimeters or the dosimeters were not always in the radiation field. Cytogenetic studies should be extended to more workers to assess the risk derived from their occupational exposure. (authors)

Secondary standard dosimetry laboratories: Development and trends

International Nuclear Information System (INIS)

1985-08-01

This publication describes the work of the IAEA and the WHO in the establishment of a network of Secondary Standard Dosimetry Laboratories. Membership in the SSDL network has now risen to about 50 laboratories, of which 36 are in developing countries

Power Laws, Scale-Free Networks and Genome Biology

CERN Document Server

Koonin, Eugene V; Karev, Georgy P

2006-01-01

Power Laws, Scale-free Networks and Genome Biology deals with crucial aspects of the theoretical foundations of systems biology, namely power law distributions and scale-free networks which have emerged as the hallmarks of biological organization in the post-genomic era. The chapters in the book not only describe the interesting mathematical properties of biological networks but moves beyond phenomenology, toward models of evolution capable of explaining the emergence of these features. The collection of chapters, contributed by both physicists and biologists, strives to address the problems in this field in a rigorous but not excessively mathematical manner and to represent different viewpoints, which is crucial in this emerging discipline. Each chapter includes, in addition to technical descriptions of properties of biological networks and evolutionary models, a more general and accessible introduction to the respective problems. Most chapters emphasize the potential of theoretical systems biology for disco...

Design principles in biological networks

Science.gov (United States)

Goyal, Sidhartha

Much of biology emerges from networks of interactions. Even in a single bacterium such as Escherichia coli, there are hundreds of coexisting gene and protein networks. Although biological networks are the outcome of evolution, various physical and biological constraints limit their functional capacity. The focus of this thesis is to understand how functional constraints such as optimal growth in mircoorganisms and information flow in signaling pathways shape the metabolic network of bacterium E. coli and the quorum sensing network of marine bacterium Vibrio harveyi, respectively. Metabolic networks convert basic elemental sources into complex building-blocks eventually leading to cell's growth. Therefore, typically, metabolic pathways are often coupled both by the use of a common substrate and by stoichiometric utilization of their products for cell growth. We showed that such a coupled network with product-feedback inhibition may exhibit limit-cycle oscillations which arise via a Hopf bifurcation. Furthermore, we analyzed several representative metabolic modules and find that, in all cases, simple product-feedback inhibition allows nearly optimal growth, in agreement with the predicted growth-rate by the flux-balance analysis (FBA). Bacteria have fascinating and diverse social lives. They display coordinated group behaviors regulated by quorum sensing (QS) systems. The QS circuit of V. harveyi integrates and funnels different ecological information through a common phosphorelay cascade to a set of small regulatory RNAs (sRNAs) that enables collective behavior. We analyzed the signaling properties and information flow in the QS circuit, which provides a model for information flow in signaling networks more generally. A comparative study of post-transcriptional and conventional transcriptional regulation suggest a niche for sRNAs in allowing cells to transition quickly yet reliably between distinct states. Furthermore, we develop a new framework for analyzing signal

OEDIPE, a software for personalized Monte Carlo dosimetry and treatment planning optimization in nuclear medicine: absorbed dose and biologically effective dose considerations

International Nuclear Information System (INIS)

Petitguillaume, A.; Broggio, D.; Franck, D.; Desbree, A.; Bernardini, M.; Labriolle Vaylet, C. de

2014-01-01

For targeted radionuclide therapies, treatment planning usually consists of the administration of standard activities without accounting for the patient-specific activity distribution, pharmacokinetics and dosimetry to organs at risk. The OEDIPE software is a user-friendly interface which has an automation level suitable for performing personalized Monte Carlo 3D dosimetry for diagnostic and therapeutic radionuclide administrations. Mean absorbed doses to regions of interest (ROIs), isodose curves superimposed on a personalized anatomical model of the patient and dose-volume histograms can be extracted from the absorbed dose 3D distribution. Moreover, to account for the differences in radiosensitivity between tumoral and healthy tissues, additional functionalities have been implemented to calculate the 3D distribution of the biologically effective dose (BED), mean BEDs to ROIs, isoBED curves and BED-volume histograms along with the Equivalent Uniform Biologically Effective Dose (EUD) to ROIs. Finally, optimization tools are available for treatment planning optimization using either the absorbed dose or BED distributions. These tools enable one to calculate the maximal injectable activity which meets tolerance criteria to organs at risk for a chosen fractionation protocol. This paper describes the functionalities available in the latest version of the OEDIPE software to perform personalized Monte Carlo dosimetry and treatment planning optimization in targeted radionuclide therapies. (authors)

Dosimetry using environmental and biological materials. Final report

International Nuclear Information System (INIS)

Haskell, E.; Kenner, G.; Hayes, R.

1998-02-01

This report summarizes a five year effort to improve the sensitivity and reliability of retrospective dosimetry methods, to collaborate with laboratories engaged in related research and to share the technology with startup laboratories seeking similar capabilities. This research program has focused on validation of electron paramagnetic resonance (EPR) as a dosimetry tool and on optimization of the technique by reducing the lower limits of detection, simplifying the process of sample preparation and analysis and speeding analysis to allow greater throughput in routine measurement situations. The authors have investigated the dosimetric signal of hard tissues in enamel, deorganified dentin, synthetic carbonated apatites and synthetic hydroxyapatite. This research has resulted in a total of 27 manuscripts which have been published, are in press, or have been submitted for publication. Of these manuscripts, 14 are included in this report and were indexed separately for inclusion in the data base

Integration of genomic information with biological networks using Cytoscape.

Science.gov (United States)

Bauer-Mehren, Anna

2013-01-01

Cytoscape is an open-source software for visualizing, analyzing, and modeling biological networks. This chapter explains how to use Cytoscape to analyze the functional effect of sequence variations in the context of biological networks such as protein-protein interaction networks and signaling pathways. The chapter is divided into five parts: (1) obtaining information about the functional effect of sequence variation in a Cytoscape readable format, (2) loading and displaying different types of biological networks in Cytoscape, (3) integrating the genomic information (SNPs and mutations) with the biological networks, and (4) analyzing the effect of the genomic perturbation onto the network structure using Cytoscape built-in functions. Finally, we briefly outline how the integrated data can help in building mathematical network models for analyzing the effect of the sequence variation onto the dynamics of the biological system. Each part is illustrated by step-by-step instructions on an example use case and visualized by many screenshots and figures.

The effect of network biology on drug toxicology

DEFF Research Database (Denmark)

Gautier, Laurent; Taboureau, Olivier; Audouze, Karine Marie Laure

2013-01-01

Introduction: The high failure rate of drug candidates due to toxicity, during clinical trials, is a critical issue in drug discovery. Network biology has become a promising approach, in this regard, using the increasingly large amount of biological and chemical data available and combining...... it with bioinformatics. With this approach, the assessment of chemical safety can be done across multiple scales of complexity from molecular to cellular and system levels in human health. Network biology can be used at several levels of complexity. Areas covered: This review describes the strengths and limitations...... of network biology. The authors specifically assess this approach across different biological scales when it is applied to toxicity. Expert opinion: There has been much progress made with the amount of data that is generated by various omics technologies. With this large amount of useful data, network...

External dosimetry - Applications to radiation protection

International Nuclear Information System (INIS)

Faussot, Alain

2011-01-01

Dosimetry is the essential component of radiation protection. It allows to determine by calculation and measurement the absorbed dose value, i.e. the energy amounts deposited in matter by ionizing radiations. It deals also with the irradiation effects on living organisms and with their biological consequences. This reference book gathers all the necessary information to understand and master the external dosimetry and the metrology of ionizing radiations, from the effects of radiations to the calibration of radiation protection devices. The first part is devoted to physical dosimetry and allows to obtain in a rigorous manner the mathematical formalisms leading to the absorbed dose for different ionizing radiation fields. The second part presents the biological effects of ionizing radiations on living matter and the determination of a set of specific radiation protection concepts and data to express the 'risk' to develop a radio-induced cancer. The third part deals with the metrology of ionizing radiations through the standardized study of the methods used for the calibration of radiation protection equipments. Some practical exercises with their corrections are proposed at the end of each chapter

Calibration curves for biological dosimetry; Curvas de calibracion para dosimetria biologica

Energy Technology Data Exchange (ETDEWEB)

Guerrero C, C.; Brena V, M. [ININ, A.P. 18-1027, 11801 Mexico D.F. (Mexico)]. E-mail cgc@nuclear.inin.mx

2004-07-01

The generated information by the investigations in different laboratories of the world, included the ININ, in which settles down that certain class of chromosomal leisure it increases in function of the dose and radiation type, has given by result the obtaining of calibrated curves that are applied in the well-known technique as biological dosimetry. In this work is presented a summary of the work made in the laboratory that includes the calibrated curves for gamma radiation of {sup 60} Cobalt and X rays of 250 k Vp, examples of presumed exposure to ionizing radiation, resolved by means of aberration analysis and the corresponding dose estimate through the equations of the respective curves and finally a comparison among the dose calculations in those people affected by the accident of Ciudad Juarez, carried out by the group of Oak Ridge, USA and those obtained in this laboratory. (Author)

[Network structures in biological systems].

Science.gov (United States)

Oleskin, A V

2013-01-01

Network structures (networks) that have been extensively studied in the humanities are characterized by cohesion, a lack of a central control unit, and predominantly fractal properties. They are contrasted with structures that contain a single centre (hierarchies) as well as with those whose elements predominantly compete with one another (market-type structures). As far as biological systems are concerned, their network structures can be subdivided into a number of types involving different organizational mechanisms. Network organization is characteristic of various structural levels of biological systems ranging from single cells to integrated societies. These networks can be classified into two main subgroups: (i) flat (leaderless) network structures typical of systems that are composed of uniform elements and represent modular organisms or at least possess manifest integral properties and (ii) three-dimensional, partly hierarchical structures characterized by significant individual and/or intergroup (intercaste) differences between their elements. All network structures include an element that performs structural, protective, and communication-promoting functions. By analogy to cell structures, this element is denoted as the matrix of a network structure. The matrix includes a material and an immaterial component. The material component comprises various structures that belong to the whole structure and not to any of its elements per se. The immaterial (ideal) component of the matrix includes social norms and rules regulating network elements' behavior. These behavioral rules can be described in terms of algorithms. Algorithmization enables modeling the behavior of various network structures, particularly of neuron networks and their artificial analogs.

A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Trade-offs on Phenotype Robustness in Biological Networks. Part III: Synthetic Gene Networks in Synthetic Biology

Science.gov (United States)

Chen, Bor-Sen; Lin, Ying-Po

2013-01-01

Robust stabilization and environmental disturbance attenuation are ubiquitous systematic properties that are observed in biological systems at many different levels. The underlying principles for robust stabilization and environmental disturbance attenuation are universal to both complex biological systems and sophisticated engineering systems. In many biological networks, network robustness should be large enough to confer: intrinsic robustness for tolerating intrinsic parameter fluctuations; genetic robustness for buffering genetic variations; and environmental robustness for resisting environmental disturbances. Network robustness is needed so phenotype stability of biological network can be maintained, guaranteeing phenotype robustness. Synthetic biology is foreseen to have important applications in biotechnology and medicine; it is expected to contribute significantly to a better understanding of functioning of complex biological systems. This paper presents a unifying mathematical framework for investigating the principles of both robust stabilization and environmental disturbance attenuation for synthetic gene networks in synthetic biology. Further, from the unifying mathematical framework, we found that the phenotype robustness criterion for synthetic gene networks is the following: if intrinsic robustness + genetic robustness + environmental robustness ≦ network robustness, then the phenotype robustness can be maintained in spite of intrinsic parameter fluctuations, genetic variations, and environmental disturbances. Therefore, the trade-offs between intrinsic robustness, genetic robustness, environmental robustness, and network robustness in synthetic biology can also be investigated through corresponding phenotype robustness criteria from the systematic point of view. Finally, a robust synthetic design that involves network evolution algorithms with desired behavior under intrinsic parameter fluctuations, genetic variations, and environmental

From biological and social network metaphors to coupled bio-social wireless networks

Science.gov (United States)

Barrett, Christopher L.; Eubank, Stephen; Anil Kumar, V.S.; Marathe, Madhav V.

2010-01-01

Biological and social analogies have been long applied to complex systems. Inspiration has been drawn from biological solutions to solve problems in engineering products and systems, ranging from Velcro to camouflage to robotics to adaptive and learning computing methods. In this paper, we present an overview of recent advances in understanding biological systems as networks and use this understanding to design and analyse wireless communication networks. We expand on two applications, namely cognitive sensing and control and wireless epidemiology. We discuss how our work in these two applications is motivated by biological metaphors. We believe that recent advances in computing and communications coupled with advances in health and social sciences raise the possibility of studying coupled bio-social communication networks. We argue that we can better utilise the advances in our understanding of one class of networks to better our understanding of the other. PMID:21643462

Functional model of biological neural networks.

Science.gov (United States)

Lo, James Ting-Ho

2010-12-01

A functional model of biological neural networks, called temporal hierarchical probabilistic associative memory (THPAM), is proposed in this paper. THPAM comprises functional models of dendritic trees for encoding inputs to neurons, a first type of neuron for generating spike trains, a second type of neuron for generating graded signals to modulate neurons of the first type, supervised and unsupervised Hebbian learning mechanisms for easy learning and retrieving, an arrangement of dendritic trees for maximizing generalization, hardwiring for rotation-translation-scaling invariance, and feedback connections with different delay durations for neurons to make full use of present and past informations generated by neurons in the same and higher layers. These functional models and their processing operations have many functions of biological neural networks that have not been achieved by other models in the open literature and provide logically coherent answers to many long-standing neuroscientific questions. However, biological justifications of these functional models and their processing operations are required for THPAM to qualify as a macroscopic model (or low-order approximate) of biological neural networks.

Personal dosimetry service of VF, a.s. company

International Nuclear Information System (INIS)

Prasek, P.

2009-01-01

The VF, a.s. Company will extend its services in the area of personal dosimetry at the end of 2008, which is fully in compliance with the requirements of the Atomic Act, section 9 paragraph (1) letter r) and Decree on Radiation Protection, section 59 paragraph (1) letter a). Optically stimulated luminescence was selected in VF .a.s. as the most advantageous and the most advanced technology for the integral personal dosimetry. Optically stimulated luminescence (OSL) has been using in dosimetry for more than ten years. Although it is relatively new technology , its indisputable advantages predetermine that technology has significantly benefited in personal dosimetry services within a short time all over the advanced world. The VF, a.s. personal dosimetry service is based on the licensed products of LANDAUER, the US company, which is the world leader in OSL dosimetry. Crystalline Al 2 O 3 :C was selected as the detection material. All equipment of personal dosimetry service is installed in the VF Centre of Technology in Cerna Hora. The personal dosimetry service is incorporated in the International LANDAUER Dosimetry Service Network, and in the European Union, it is directly linked to the LANDAUER European Headquarters with its office in Paris. As a part of the OSL technology licence, the VF personal dosimetry service was included in the inter-laboratory comparison programme of the LANDAUER syndicate. (author)

Personal dosimetry service of VF, a.s. company

International Nuclear Information System (INIS)

Prasek, P.

2008-01-01

The VF, a.s. Company will extend its services in the area of personal dosimetry at the end of 2008, which is fully in compliance with the requirements of the Atomic Act, section 9 paragraph (1) letter r) and Decree on Radiation Protection, section 59 paragraph (1) letter a). Optically stimulated luminescence was selected in VF .a.s. as the most advantageous and the most advanced technology for the integral personal dosimetry . Optically stimulated luminescence (OSL) has been using in dosimetry for more than ten years. Although it is relatively new technology , its indisputable advantages predetermine that technology has significantly benefited in personal dosimetry services within a short time all over the advanced world. The VF, a.s. personal dosimetry service is based on the licensed products of LANDAUER, the US company, which is the world leader in OSL dosimetry. Crystalline Al 2 O 3 :C was selected as the detection material. All equipment of personal dosimetry service is installed in the VF Centre of Technology in Cerna Hora. The personal dosimetry service is incorporated in the International LANDAUER Dosimetry Service Network, and in the European Union, it is directly linked to the LANDAUER European Headquarters with its office in Paris. As a part of the OSL technology licence, the VF personal dosimetry service was included in the inter-laboratory comparison programme of the LANDAUER syndicate. (author)

Biological (DB) and internal dosimetry (DI) in patients with differentiated thyroid carcinoma (CaDT) treated with iodine 131

International Nuclear Information System (INIS)

Fadel, Ana M.; Chebel, G.; Oneto, A.; Di Giorgio, Marina; Vallerga, Maria B.; Taja, Maria R.; Radl, A.; Rojo, Ana M.; Deluca, G.; Levi de Cabrejas, Mariana; Cabrejas, Raul C.

2009-01-01

The internal 131 I radiotherapy in patients with CaDT is used within the therapeutic scheme as a step post-thyroidectomy. The success of therapy is to achieve a lethal dose in the tumor tissue without exceeding the dose of tolerance in healthy tissues (doses greater than 2 Gy in bone marrow could lead to myelotoxicity). In this work, the treatment protocol applied incorporates assessment by biological (DB) and internal dosimetry (DI) for estimating doses to the whole body and bone marrow to administer a therapeutic personalized for each patient. The estimate biological dose is based in the quantification of chromosomal aberrations, which is referred to a dose-response curve. Objectives: 1) To estimate the absorbed dose to the whole body and bone marrow due to the administration of 131 I therapy in patients with CaDT, by applying three different cytogenetic tests: conventional cytogenetics, micronuclei (MN) and fluorescence in situ hybridization (FISH); 2) Assess the correlation of the results obtained by DB and DI for personalization of treatment. Materials and methods: We evaluated 24 patients with CaDiT by applying the cytogenetic tests mentioned and internal dosimetry (methodology Mird-Olinda). Internal dosimetry: We administered a tracer dose 74 to 111 MBq. Measurements were made of activity in whole body and blood. By adjusting the scheme was estimated MIRD dose in bone marrow and the maximum therapeutic activity to manage and secure. Through software Olinda was determined absorbed dose to the whole body for each patient. We considered patient-specific data (physical frame size, weight, hematocrit) to adjust the methodology in each particular case. It is assumed that the tracer activity administered has a kinetic in the body similar to the 131 I to be administered in therapeutic amounts. Biology Dosimetry : We performed for each patient taking 2 sequential venous blood samples to estimate the dose due to therapeutic activity in review: the first shows, pre

Reconstructing Causal Biological Networks through Active Learning.

Directory of Open Access Journals (Sweden)

Hyunghoon Cho

Full Text Available Reverse-engineering of biological networks is a central problem in systems biology. The use of intervention data, such as gene knockouts or knockdowns, is typically used for teasing apart causal relationships among genes. Under time or resource constraints, one needs to carefully choose which intervention experiments to carry out. Previous approaches for selecting most informative interventions have largely been focused on discrete Bayesian networks. However, continuous Bayesian networks are of great practical interest, especially in the study of complex biological systems and their quantitative properties. In this work, we present an efficient, information-theoretic active learning algorithm for Gaussian Bayesian networks (GBNs, which serve as important models for gene regulatory networks. In addition to providing linear-algebraic insights unique to GBNs, leading to significant runtime improvements, we demonstrate the effectiveness of our method on data simulated with GBNs and the DREAM4 network inference challenge data sets. Our method generally leads to faster recovery of underlying network structure and faster convergence to final distribution of confidence scores over candidate graph structures using the full data, in comparison to random selection of intervention experiments.

Solid State and Chemical Radiation Dosimetry in Medicine and Biology. Proceedings of a Symposium

International Nuclear Information System (INIS)

1967-01-01

Proceedings of a Symposium organized by the IAEA and held in Vienna, 3-7 October 1966. The meeting was attended by 104 participants from 21 countries and three international organizations. Contents: Solid state dosimetry (17 papers); Chemical dosimetry (10 papers); Invited lectures (2 papers); General aspects and other methods of dosimetry (6 papers); Panel discussion on research and development needed in dosimetry. Each paper is in its original language (32 English, 2 French and 1 Spanish) and is preceded by an abstract in English and one in the original language, if this is not English. Discussions are in English. (author)

Solid State and Chemical Radiation Dosimetry in Medicine and Biology. Proceedings of a Symposium

Energy Technology Data Exchange (ETDEWEB)

NONE

1967-03-15

Proceedings of a Symposium organized by the IAEA and held in Vienna, 3-7 October 1966. The meeting was attended by 104 participants from 21 countries and three international organizations. Contents: Solid state dosimetry (17 papers); Chemical dosimetry (10 papers); Invited lectures (2 papers); General aspects and other methods of dosimetry (6 papers); Panel discussion on research and development needed in dosimetry. Each paper is in its original language (32 English, 2 French and 1 Spanish) and is preceded by an abstract in English and one in the original language, if this is not English. Discussions are in English. (author)

Dosimetry: an ARDENT topic

CERN Multimedia

CERN Bulletin

2012-01-01

The first annual ARDENT workshop took place in Vienna from 20 to 23 November. The workshop gathered together the Early-Stage Researchers (ESR) and their supervisors, plus other people involved from all the participating institutions.   “The meeting, which was organised with the local support of the Austrian Institute of Technology, was a nice opportunity for the ESRs to get together, meet each other, and present their research plans and some preliminary results of their work,” says Marco Silari, a member of CERN Radiation Protection Group and the scientist in charge of the programme. Two full days were devoted to a training course on radiation dosimetry, delivered by renowned experts. The workshop closed with a half-day visit to the MedAustron facility in Wiener Neustadt. ARDENT (Advanced Radiation Dosimetry European Network Training) is a Marie Curie ITN project funded under EU FP7 with €4 million. The project focuses on radiation dosimetry exploiting se...

Role of secondary standard dosimetry laboratory in radiation protection program

International Nuclear Information System (INIS)

Rahman, Sohaila; Ali, Noriah Mohd.

2008-01-01

Full text: The radiation dosimetry program is an important element of operational radiation protection. Dosimetry data enable workers and radiation protection professionals to evaluate and control work practices to eliminate unnecessary exposure to ionizing radiation. The usefulness of the data produced however depends on its quality and traceability. The emphasis of the global dosimetry program is focused through the IAEA/WHO network of secondary standard dosimetry laboratories (SSDLs), which aims for the determination of SI quantities through proper traceable calibration of radiation protection equipment. The responsibility of SSDL-NUCLEAR MALAYSIA to guarantee a reliable dosimetry service, which is traceable to international standards, is elucidated. It acts as the basis for harmonized occupational radiation monitoring in Malaysia.

Usefulness and limits of biological dosimetry based on cytogenetic methods

International Nuclear Information System (INIS)

Leonard, A.; Rueff, J.; Gerber, G. B.; Leonard, E. D.

2005-01-01

Damage from occupational or accidental exposure to ionising radiation is often assessed by monitoring chromosome aberrations in peripheral blood lymphocytes, and these procedures have, in several cases, assisted physicians in the management of irradiated persons. Thereby, circulating lymphocytes, which are in the G0 stage of the cell cycle are stimulated with a mitogenic agent, usually phytohaemagglutinin, to replicate in vitro their DNA and enter cell division, and are then observed for abnormalities. Comparison with dose response relationships obtained in vitro allows an estimate of exposure based on scoring: - Unstable aberrations by the conventional, well-established analysis of metaphases for chromosome abnormalities or for micronuclei; - So-called stable aberrations by the classical G-banding (Giemsa-Stain-banding) technique or by the more recently developed fluorescent in situ hybridisation (FISH) method using fluorescent-labelled probes for centromeres and chromosomes. Three factors need to be considered in applying such biological dosimetry: (1) Radiation doses in the body are often inhomogeneous. A comparison of the distribution of the observed aberrations among with that expected from a normal poisson distribution can allow conclusions to be made with regard to the inhomogeneity of exposure by means of the so-called contaminated poisson distribution method; however, its application requires a sufficiently large number of aberrations, i.e. an exposure to a rather large dose at a high dose rate. (2) Exposure can occur at a low dose rate (e.g. from spread or lost radioactive sources) rendering a comparison with in vitro exposure hazardous. Dose-effect relationships of most aberrations that were scored, such as translocations, follow a square law. Repair intervening during exposure reduces the quadratic component with decreasing dose rate as exposure is spread over a longer period of time. No valid solution for this problem has yet been developed, although

Topics in radiation dosimetry radiation dosimetry

CERN Document Server

1972-01-01

Radiation Dosimetry, Supplement 1: Topics in Radiation Dosimetry covers instruments and techniques in dealing with special dosimetry problems. The book discusses thermoluminescence dosimetry in archeological dating; dosimetric applications of track etching; vacuum chambers of radiation measurement. The text also describes wall-less detectors in microdosimetry; dosimetry of low-energy X-rays; and the theory and general applicability of the gamma-ray theory of track effects to various systems. Dose equivalent determinations in neutron fields by means of moderator techniques; as well as developm

Extension of the biological effective dose to the MIRD schema and possible implications in radionuclide therapy dosimetry

International Nuclear Information System (INIS)

Baechler, Sebastien; Hobbs, Robert F.; Prideaux, Andrew R.; Wahl, Richard L.; Sgouros, George

2008-01-01

In dosimetry-based treatment planning protocols, patients with rapid clearance of the radiopharmaceutical require a larger amount of initial activity than those with slow clearance to match the absorbed dose to the critical organ. As a result, the dose-rate to the critical organ is higher in patients with rapid clearance and may cause unexpected toxicity compared to patients with slow clearance. In order to account for the biological impact of different dose-rates, radiobiological modeling is beginning to be applied to the analysis of radionuclide therapy patient data. To date, the formalism used for these analyses is based on kinetics derived from activity in a single organ, the target. This does not include the influence of other source organs to the dose and dose-rate to the target organ. As a result, only self-dose irradiation in the target organ contributes to the dose-rate. In this work, the biological effective dose (BED) formalism has been extended to include the effect of multiple source organ contributions to the net dose-rate in a target organ. The generalized BED derivation has been based on the Medical Internal Radionuclide Dose Committee (MIRD) schema assuming multiple source organs following exponential effective clearance of the radionuclide. A BED-based approach to determine the largest safe dose to critical organs has also been developed. The extended BED formalism is applied to red marrow dosimetry, as well as kidney dosimetry considering the cortex and the medulla separately, since both those organs are commonly dose limiting in radionuclide therapy. The analysis shows that because the red marrow is an early responding tissue (high α/β), it is less susceptible to unexpected toxicity arising from rapid clearance of high levels of administered activity in the marrow or in the remainder of the body. In kidney dosimetry, the study demonstrates a complex interplay between clearance of activity in the cortex and the medulla, as well as the initial

Interest of numerical dosimetry in radiation protection: mean of substitution or measurements consolidation?; Interet de la dosimetrie numerique en radioprotection: moyen de substitution ou de consolidation des mesures?

Energy Technology Data Exchange (ETDEWEB)

Lahaye, T.; Chau, Q. [Institut de Radioprotection et de Surete Nucleaire (IRSN/DPHD/SDOS), Service Dosimetrie, 92 - Fontenay-aux-Roses (France); Ferragut, A.; Gillot, J.Y. [SAPHYMO, 91 - Massy (France)

2003-07-01

The use of calculation codes allows to reduce the costs and the time limits. These codes brings to operators elements to reinforce their projected dosimetry. In the cases of accidental overexposure, the numerical dosimetry comes in complement of clinical and biological investigations to give an estimation as precise as possible of the received dose. For particular situations where it does not exist an adapted instrumentation, the numerical dosimetry can substitute to conventional techniques used by regulatory dosimetry (project for aviation personnel). (N.C.)

Applying differential dynamic logic to reconfigurable biological networks.

Science.gov (United States)

Figueiredo, Daniel; Martins, Manuel A; Chaves, Madalena

2017-09-01

Qualitative and quantitative modeling frameworks are widely used for analysis of biological regulatory networks, the former giving a preliminary overview of the system's global dynamics and the latter providing more detailed solutions. Another approach is to model biological regulatory networks as hybrid systems, i.e., systems which can display both continuous and discrete dynamic behaviors. Actually, the development of synthetic biology has shown that this is a suitable way to think about biological systems, which can often be constructed as networks with discrete controllers, and present hybrid behaviors. In this paper we discuss this approach as a special case of the reconfigurability paradigm, well studied in Computer Science (CS). In CS there are well developed computational tools to reason about hybrid systems. We argue that it is worth applying such tools in a biological context. One interesting tool is differential dynamic logic (dL), which has recently been developed by Platzer and applied to many case-studies. In this paper we discuss some simple examples of biological regulatory networks to illustrate how dL can be used as an alternative, or also as a complement to methods already used. Copyright © 2017 Elsevier Inc. All rights reserved.

Organization of excitable dynamics in hierarchical biological networks.

Directory of Open Access Journals (Sweden)

Mark Müller-Linow

Full Text Available This study investigates the contributions of network topology features to the dynamic behavior of hierarchically organized excitable networks. Representatives of different types of hierarchical networks as well as two biological neural networks are explored with a three-state model of node activation for systematically varying levels of random background network stimulation. The results demonstrate that two principal topological aspects of hierarchical networks, node centrality and network modularity, correlate with the network activity patterns at different levels of spontaneous network activation. The approach also shows that the dynamic behavior of the cerebral cortical systems network in the cat is dominated by the network's modular organization, while the activation behavior of the cellular neuronal network of Caenorhabditis elegans is strongly influenced by hub nodes. These findings indicate the interaction of multiple topological features and dynamic states in the function of complex biological networks.

Application of random matrix theory to biological networks

Energy Technology Data Exchange (ETDEWEB)

Luo Feng [Department of Computer Science, Clemson University, 100 McAdams Hall, Clemson, SC 29634 (United States); Department of Pathology, U.T. Southwestern Medical Center, 5323 Harry Hines Blvd. Dallas, TX 75390-9072 (United States); Zhong Jianxin [Department of Physics, Xiangtan University, Hunan 411105 (China) and Oak Ridge National Laboratory, Oak Ridge, TN 37831 (United States)]. E-mail: zhongjn@ornl.gov; Yang Yunfeng [Oak Ridge National Laboratory, Oak Ridge, TN 37831 (United States); Scheuermann, Richard H. [Department of Pathology, U.T. Southwestern Medical Center, 5323 Harry Hines Blvd. Dallas, TX 75390-9072 (United States); Zhou Jizhong [Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019 (United States) and Oak Ridge National Laboratory, Oak Ridge, TN 37831 (United States)]. E-mail: zhouj@ornl.gov

2006-09-25

We show that spectral fluctuation of interaction matrices of a yeast protein-protein interaction network and a yeast metabolic network follows the description of the Gaussian orthogonal ensemble (GOE) of random matrix theory (RMT). Furthermore, we demonstrate that while the global biological networks evaluated belong to GOE, removal of interactions between constituents transitions the networks to systems of isolated modules described by the Poisson distribution. Our results indicate that although biological networks are very different from other complex systems at the molecular level, they display the same statistical properties at network scale. The transition point provides a new objective approach for the identification of functional modules.

Probabilistic biological network alignment.

Science.gov (United States)

Todor, Andrei; Dobra, Alin; Kahveci, Tamer

2013-01-01

Interactions between molecules are probabilistic events. An interaction may or may not happen with some probability, depending on a variety of factors such as the size, abundance, or proximity of the interacting molecules. In this paper, we consider the problem of aligning two biological networks. Unlike existing methods, we allow one of the two networks to contain probabilistic interactions. Allowing interaction probabilities makes the alignment more biologically relevant at the expense of explosive growth in the number of alternative topologies that may arise from different subsets of interactions that take place. We develop a novel method that efficiently and precisely characterizes this massive search space. We represent the topological similarity between pairs of aligned molecules (i.e., proteins) with the help of random variables and compute their expected values. We validate our method showing that, without sacrificing the running time performance, it can produce novel alignments. Our results also demonstrate that our method identifies biologically meaningful mappings under a comprehensive set of criteria used in the literature as well as the statistical coherence measure that we developed to analyze the statistical significance of the similarity of the functions of the aligned protein pairs.

Collaborative Physical and Biological Dosimetry Studies for Neutron Capture Therapy at the RA-1 Research Reactor Facility

Energy Technology Data Exchange (ETDEWEB)

David W. Nigg; Amanda E. Schwint; John K. Hartwell; Elisa M. Heber; Veronica Trivillin; Jorge Castillo; Luis Wentzeis; Patrick Sloan; Charles A. Wemple

2004-10-01

Initial physical dosimetry measurements have been completed using activation spectrometry and thermoluminiscent dosimeters to characterize the BNCT irradiation facility developed at the RA-1 research reactor operated by the Argentine National Atomic Energy Commission in Buenos Aires. Some biological scoping irradiations have also been completed using a small-animal (hamster) oral mucosa tumor model. Results indicate that the RA-1 neutron source produces useful dose rates but that some improvements in the initial configuration will be needed to optimize the spectrum for thermal-neutron BNCT research applications.

Collaborative Physical and Biological Dosimetry Studies for Neutron Capture Therapy at the RA-1 Research Reactor Facility

Energy Technology Data Exchange (ETDEWEB)

Nigg, D.W.; Schwint, A.E.; Hartwell, J.K.; Heber, E.M.; Trivillin, V.; Castillo, J.; Wentzeis, L.; Sloan, P.; Wemple, C.A.

2004-10-04

Initial physical dosimetry measurements have been completed using activation spectrometry and thermoluminiscent dosimeters to characterize the BNCT irradiation facility developed at the RA-1 research reactor operated by the Argentine National Atomic Energy Commission in Buenos Aires. Some biological scoping irradiations have also been completed using a small-animal (hamster) oral mucosa tumor model. Results indicate that the RA-1 neutron source produces useful dose rates but that some improvements in the initial configuration will be needed to optimize the spectrum for thermal-neutron BNCT research applications.

External audit in radiotherapy dosimetry

International Nuclear Information System (INIS)

Thwaites, D.I.; Western General Hospital, Edinburgh

1996-01-01

Quality audit forms an essential part of any comprehensive quality assurance programme. This is true in radiotherapy generally and in specific areas such as radiotherapy dosimetry. Quality audit can independently test the effectiveness of the quality system and in so doing can identify problem areas and minimize their possible consequences. Some general points concerning quality audit applied to radiotherapy are followed by specific discussion of its practical role in radiotherapy dosimetry, following its evolution from dosimetric intercomparison exercises to routine measurement-based on-going audit in the various developing audit networks both in the UK and internationally. Specific examples of methods and results are given from some of these, including the Scottish+ audit group. Quality audit in radiotherapy dosimetry is now well proven and participation by individual centres is strongly recommended. Similar audit approaches are to be encouraged in other areas of the radiotherapy process. (author)

Dosimetry for audit and clinical trials: challenges and requirements

International Nuclear Information System (INIS)

Kron, T; Haworth, A; Williams, I

2013-01-01

Many important dosimetry audit networks for radiotherapy have their roots in clinical trial quality assurance (QA). In both scenarios it is essential to test two issues: does the treatment plan conform with the clinical requirements and is the plan a reasonable representation of what is actually delivered to a patient throughout their course of treatment. Part of a sound quality program would be an external audit of these issues with verification of the equivalence of plan and treatment typically referred to as a dosimetry audit. The increasing complexity of radiotherapy planning and delivery makes audits challenging. While verification of absolute dose delivered at a reference point was the standard of external dosimetry audits two decades ago this is often deemed inadequate for verification of treatment approaches such as Intensity Modulated Radiation Therapy (IMRT) and Volumetric Modulated Arc Therapy (VMAT). As such, most dosimetry audit networks have successfully introduced more complex tests of dose delivery using anthropomorphic phantoms that can be imaged, planned and treated as a patient would. The new challenge is to adapt this approach to ever more diversified radiotherapy procedures with image guided/adaptive radiotherapy, motion management and brachytherapy being the focus of current research.

Characterizing the topology of probabilistic biological networks.

Science.gov (United States)

Todor, Andrei; Dobra, Alin; Kahveci, Tamer

2013-01-01

Biological interactions are often uncertain events, that may or may not take place with some probability. This uncertainty leads to a massive number of alternative interaction topologies for each such network. The existing studies analyze the degree distribution of biological networks by assuming that all the given interactions take place under all circumstances. This strong and often incorrect assumption can lead to misleading results. In this paper, we address this problem and develop a sound mathematical basis to characterize networks in the presence of uncertain interactions. Using our mathematical representation, we develop a method that can accurately describe the degree distribution of such networks. We also take one more step and extend our method to accurately compute the joint-degree distributions of node pairs connected by edges. The number of possible network topologies grows exponentially with the number of uncertain interactions. However, the mathematical model we develop allows us to compute these degree distributions in polynomial time in the number of interactions. Our method works quickly even for entire protein-protein interaction (PPI) networks. It also helps us find an adequate mathematical model using MLE. We perform a comparative study of node-degree and joint-degree distributions in two types of biological networks: the classical deterministic networks and the more flexible probabilistic networks. Our results confirm that power-law and log-normal models best describe degree distributions for both probabilistic and deterministic networks. Moreover, the inverse correlation of degrees of neighboring nodes shows that, in probabilistic networks, nodes with large number of interactions prefer to interact with those with small number of interactions more frequently than expected. We also show that probabilistic networks are more robust for node-degree distribution computation than the deterministic ones. all the data sets used, the software

Characterizing Topology of Probabilistic Biological Networks.

Science.gov (United States)

Todor, Andrei; Dobra, Alin; Kahveci, Tamer

2013-09-06

Biological interactions are often uncertain events, that may or may not take place with some probability. Existing studies analyze the degree distribution of biological networks by assuming that all the given interactions take place under all circumstances. This strong and often incorrect assumption can lead to misleading results. Here, we address this problem and develop a sound mathematical basis to characterize networks in the presence of uncertain interactions. We develop a method that accurately describes the degree distribution of such networks. We also extend our method to accurately compute the joint degree distributions of node pairs connected by edges. The number of possible network topologies grows exponentially with the number of uncertain interactions. However, the mathematical model we develop allows us to compute these degree distributions in polynomial time in the number of interactions. It also helps us find an adequate mathematical model using maximum likelihood estimation. Our results demonstrate that power law and log-normal models best describe degree distributions for probabilistic networks. The inverse correlation of degrees of neighboring nodes shows that, in probabilistic networks, nodes with large number of interactions prefer to interact with those with small number of interactions more frequently than expected.

Multilayer network modeling of integrated biological systems. Comment on "Network science of biological systems at different scales: A review" by Gosak et al.

Science.gov (United States)

De Domenico, Manlio

2018-03-01

Biological systems, from a cell to the human brain, are inherently complex. A powerful representation of such systems, described by an intricate web of relationships across multiple scales, is provided by complex networks. Recently, several studies are highlighting how simple networks - obtained by aggregating or neglecting temporal or categorical description of biological data - are not able to account for the richness of information characterizing biological systems. More complex models, namely multilayer networks, are needed to account for interdependencies, often varying across time, of biological interacting units within a cell, a tissue or parts of an organism.

Biological Networks Entropies: Examples in Neural Memory Networks, Genetic Regulation Networks and Social Epidemic Networks

Directory of Open Access Journals (Sweden)

Jacques Demongeot

2018-01-01

Full Text Available Networks used in biological applications at different scales (molecule, cell and population are of different types: neuronal, genetic, and social, but they share the same dynamical concepts, in their continuous differential versions (e.g., non-linear Wilson-Cowan system as well as in their discrete Boolean versions (e.g., non-linear Hopfield system; in both cases, the notion of interaction graph G(J associated to its Jacobian matrix J, and also the concepts of frustrated nodes, positive or negative circuits of G(J, kinetic energy, entropy, attractors, structural stability, etc., are relevant and useful for studying the dynamics and the robustness of these systems. We will give some general results available for both continuous and discrete biological networks, and then study some specific applications of three new notions of entropy: (i attractor entropy, (ii isochronal entropy and (iii entropy centrality; in three domains: a neural network involved in the memory evocation, a genetic network responsible of the iron control and a social network accounting for the obesity spread in high school environment.

Energy and entropy in radiation dosimetry and protection

International Nuclear Information System (INIS)

Oliveira, A.D.

2006-01-01

In this work we present and discuss a proposal to describe the degradation of the energy of photons when they interact with matter, which can be applied in radiation dosimetry and protection. Radiation dosimetry is founded in the well known physical approach of field theory as showed by Roesch and Rossi. Fluence and energy deposited are the most fundamental quantities in radiation dosimetry allowing us to calculate absorbed dose. One of the main characteristics of absorbed dose, sometimes ignored, is that it is an intensive quantity pushing radiation dosimetry into the field of statistical physics. In radiation dosimetry it is often used what we can call collective or macroscopic concepts, such as, for example, effective energy, beam quality or beam hardening and absorbed dose. Some of these concepts are trials to describe macroscopically and with simplicity what happens microscopically with a rather higher degree of complexity. In other words, is a tentative to make a bridge between the non continuous world of atoms and photons to the continuous world of radiation protection dosimetry. In computer simulations, that allow to known accurately the energy deposited in matter, absorbed dose (or fluence) is still a very useful and used quantity; however, some issues are still open problems, source of many discussions in conferences and journals in spite of the development of microdosimetry and nano-dosimetry. In spite of that, macroscopic quantities like absorbed dose are still important quantities. One of the important and controversial open question in biological effects at low doses is the linear no threshold concept (L.N.T.). In our opinion this problem is directly related with the problem mentioned above of the bridge between microscopic and macroscopic concepts. Actually, the extrapolation to low dose region is a good expression of the challenge we have to deal in order to make the connections between both worlds, the discrete micro-world to the continuous macro

Interest of numerical dosimetry in radiation protection: mean of substitution or measurements consolidation?

International Nuclear Information System (INIS)

Lahaye, T.; Chau, Q.; Ferragut, A.; Gillot, J.Y.

2003-01-01

The use of calculation codes allows to reduce the costs and the time limits. These codes brings to operators elements to reinforce their projected dosimetry. In the cases of accidental overexposure, the numerical dosimetry comes in complement of clinical and biological investigations to give an estimation as precise as possible of the received dose. For particular situations where it does not exist an adapted instrumentation, the numerical dosimetry can substitute to conventional techniques used by regulatory dosimetry (project for aviation personnel). (N.C.)

EPR Dosimetry - Present and Future

Energy Technology Data Exchange (ETDEWEB)

Regulla, D.F. [GSF - National Research Centre for Environment and Health, Institute of Radiation Protection, 85764 Neuherberg (Germany)

1999-07-01

In the past, IAEA has played a central role in stipulating research and development in EPR high-dose standardisation as well as in coordinating and organising international dose intercomparison programs, within the Member States of the United Nations from the mid-seventies till today. The future tasks of EPR dosimetry seem to tend towards different subjects such as bio markers, biological radiation effects, post-accident dose reconstruction in the environment, and retrospective human dosimetry. The latter may be considered a promising tool for epidemiology on the way to re-define radiation risk of man for chronicle radiation exposures, based on e.g. South Ural civil population and radiation workers. There are on-going international activities in the field of standardising high-level dosimetry by the American Standards on Testing and Materials (Astm), and by the International Organisation of Standards (ISO). The International Commission on Radiation Units and Measurements (ICRU) is considering the establishment of relevant recommendations concerning industrial radiation processing, but also human dose reconstruction. (Author)

Fundamentals of Dosimetry. Chapter 3

Energy Technology Data Exchange (ETDEWEB)

Yoshimura, E. M. [Universidade de São Paulo, São Paulo (Brazil)

2014-09-15

Determination of the energy imparted to matter by radiation is the subject of dosimetry. The energy deposited as radiation interacts with atoms of the material, as seen in the previous chapter. The imparted energy is responsible for the effects that radiation causes in matter, for instance, a rise in temperature, or chemical or physical changes in the material properties. Several of the changes produced in matter by radiation are proportional to the absorbed dose, giving rise to the possibility of using the material as the sensitive part of a dosimeter. Also, the biological effects of radiation depend on the absorbed dose. A set of quantities related to the radiation field is also defined within the scope of dosimetry. It will be shown in this chapter that, under special conditions, there are simple relations between dosimetric and field description quantities. Thus, the framework of dosimetry is the set of physical and operational quantities that are studied in this chapter.

EPR Dosimetry - Present and Future

International Nuclear Information System (INIS)

Regulla, D.F.

1999-01-01

In the past, IAEA has played a central role in stipulating research and development in EPR high-dose standardisation as well as in coordinating and organising international dose intercomparison programs, within the Member States of the United Nations from the mid-seventies till today. The future tasks of EPR dosimetry seem to tend towards different subjects such as bio markers, biological radiation effects, post-accident dose reconstruction in the environment, and retrospective human dosimetry. The latter may be considered a promising tool for epidemiology on the way to re-define radiation risk of man for chronicle radiation exposures, based on e.g. South Ural civil population and radiation workers. There are on-going international activities in the field of standardising high-level dosimetry by the American Standards on Testing and Materials (Astm), and by the International Organisation of Standards (ISO). The International Commission on Radiation Units and Measurements (ICRU) is considering the establishment of relevant recommendations concerning industrial radiation processing, but also human dose reconstruction. (Author)

Skeletal dosimetry models for alpha-particles for use in molecular radiotherapy

Science.gov (United States)

Watchman, Christopher J.

Molecular radiotherapy is a cancer treatment methodology whereby a radionuclide is combined with a biologically active molecule to preferentially target cancer cells. Alpha-particle emitting radionuclides show significant potential for use in molecular radiotherapy due to the short range of the alpha-particles in tissue and their high rates of energy deposition. Current radiation dosimetry models used to assess alpha emitter dose in the skeleton were developed originally for occupational applications. In medical dosimetry, individual variability in uptake, translocation and other biological factors can result in poor correlation of clinical outcome with marrow dose estimates determined using existing skeletal models. Methods presented in this work were developed in response to the need for dosimetry models which account for these biological and patient-specific factors. Dosimetry models are presented for trabecular bone alpha particle dosimetry as well as a model for cortical bone dosimetry. These radiation transport models are the 3D chord-based infinite spongiosa transport model (3D-CBIST) and the chord-based infinite cortical transport model (CBICT), respectively. Absorbed fraction data for several skeletal tissues for several subjects are presented. Each modeling strategy accounts for biological parameters, such as bone marrow cellularity, not previously incorporated into alpha-particle skeletal dosimetry models used in radiation protection. Using these data a study investigating the variability in alpha-particle absorbed fractions in the human skeleton is also presented. Data is also offered relating skeletal tissue masses in individual bone sites for a range of ages. These data are necessary for dose calculations and have previously only been available as whole body tissue masses. A revised 3D-CBIST model is also presented which allows for changes in endosteum thickness to account for revised target cell location of tissues involved in the radiological

Networks in biological systems: An investigation of the Gene Ontology as an evolving network

International Nuclear Information System (INIS)

Coronnello, C; Tumminello, M; Micciche, S; Mantegna, R.N.

2009-01-01

Many biological systems can be described as networks where different elements interact, in order to perform biological processes. We introduce a network associated with the Gene Ontology. Specifically, we construct a correlation-based network where the vertices are the terms of the Gene Ontology and the link between each two terms is weighted on the basis of the number of genes that they have in common. We analyze a filtered network obtained from the correlation-based network and we characterize its evolution over different releases of the Gene Ontology.

Biological and Environmental Research Network Requirements

Energy Technology Data Exchange (ETDEWEB)

Balaji, V. [Princeton Univ., NJ (United States). Earth Science Grid Federation (ESGF); Boden, Tom [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Cowley, Dave [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Dart, Eli [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). ESNet; Dattoria, Vince [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). ESNet; Desai, Narayan [Argonne National Lab. (ANL), Argonne, IL (United States); Egan, Rob [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Foster, Ian [Argonne National Lab. (ANL), Argonne, IL (United States); Goldstone, Robin [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Gregurick, Susan [U.S. Dept. of Energy, Washington, DC (United States). Biological Systems Science Division; Houghton, John [U.S. Dept. of Energy, Washington, DC (United States). Biological and Environmental Research (BER) Program; Izaurralde, Cesar [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Johnston, Bill [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). ESNet; Joseph, Renu [U.S. Dept. of Energy, Washington, DC (United States). Climate and Environmental Sciences Division; Kleese-van Dam, Kerstin [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Lipton, Mary [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Monga, Inder [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). ESNet; Pritchard, Matt [British Atmospheric Data Centre (BADC), Oxon (United Kingdom); Rotman, Lauren [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). ESNet; Strand, Gary [National Center for Atmospheric Research (NCAR), Boulder, CO (United States); Stuart, Cory [Argonne National Lab. (ANL), Argonne, IL (United States); Tatusova, Tatiana [National Inst. of Health (NIH), Bethesda, MD (United States); Tierney, Brian [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). ESNet; Thomas, Brian [Univ. of California, Berkeley, CA (United States); Williams, Dean N. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Zurawski, Jason [Internet2, Washington, DC (United States)

2013-09-01

The Energy Sciences Network (ESnet) is the primary provider of network connectivity for the U.S. Department of Energy (DOE) Office of Science (SC), the single largest supporter of basic research in the physical sciences in the United States. In support of SC programs, ESnet regularly updates and refreshes its understanding of the networking requirements of the instruments, facilities, scientists, and science programs that it serves. This focus has helped ESnet be a highly successful enabler of scientific discovery for over 25 years. In November 2012, ESnet and the Office of Biological and Environmental Research (BER) of the DOE SC organized a review to characterize the networking requirements of the programs funded by the BER program office. Several key findings resulted from the review. Among them: 1) The scale of data sets available to science collaborations continues to increase exponentially. This has broad impact, both on the network and on the computational and storage systems connected to the network. 2) Many science collaborations require assistance to cope with the systems and network engineering challenges inherent in managing the rapid growth in data scale. 3) Several science domains operate distributed facilities that rely on high-performance networking for success. Key examples illustrated in this report include the Earth System Grid Federation (ESGF) and the Systems Biology Knowledgebase (KBase). This report expands on these points, and addresses others as well. The report contains a findings section as well as the text of the case studies discussed at the review.

Bio-dosimetry of ionizing radiation

International Nuclear Information System (INIS)

Hadjidekova, V.; Kristova, R.; Stainova, A.; Deleva, S.; Popova, L.; Georgieva, D.

2013-01-01

Full text: Introduction: The impact of ionizing radiation in medical, occupational and accidental human exposure leads to adverse side effects such as increased mortality and carcinogenesis. Information about the level of absorbed dose is important for risk assessment and for implementation of appropriate therapy. In most cases of actual or suspected exposure to ionizing radiation biological dosimetry is the only way to assess the absorbed dose. What you will learn: In this work we discuss the methods for biodosimetry and technological developments in their application in various emergency situations. The application of biological dosimetry and assessment of the influence of external factors in the conduct of epidemiological studies of radiation effects in protracted low-dose ionizing radiation on humans is presented. Discussion: The results of cytogenetic analysis and biological evaluation of absorbed dose based on the analysis of dicentrics in peripheral blood lymphocytes of five people injured in a severe radiation accident in Bulgaria in 2011 are presented. The assessed individual doses of the injured persons are in the range of 1.2 to 5,2 Gy acute homogeneous irradiation and are in line with the estimates of international experts. Conclusion: An algorithm to conduct a biological assessment of the dose in limited radiation accidents and in large scale radiation accidents with large number irradiated or suspected for exposure persons is proposed

Uncovering Biological Network Function via Graphlet Degree Signatures

Directory of Open Access Journals (Sweden)

Nataša Pržulj

2008-01-01

Full Text Available Motivation: Proteins are essential macromolecules of life and thus understanding their function is of great importance. The number of functionally unclassified proteins is large even for simple and well studied organisms such as baker’s yeast. Methods for determining protein function have shifted their focus from targeting specific proteins based solely on sequence homology to analyses of the entire proteome based on protein-protein interaction (PPI networks. Since proteins interact to perform a certain function, analyzing structural properties of PPI networks may provide useful clues about the biological function of individual proteins, protein complexes they participate in, and even larger subcellular machines.Results: We design a sensitive graph theoretic method for comparing local structures of node neighborhoods that demonstrates that in PPI networks, biological function of a node and its local network structure are closely related. The method summarizes a protein’s local topology in a PPI network into the vector of graphlet degrees called the signature of the protein and computes the signature similarities between all protein pairs. We group topologically similar proteins under this measure in a PPI network and show that these protein groups belong to the same protein complexes, perform the same biological functions, are localized in the same subcellular compartments, and have the same tissue expressions. Moreover, we apply our technique on a proteome-scale network data and infer biological function of yet unclassified proteins demonstrating that our method can provide valuable guidelines for future experimental research such as disease protein prediction.Availability: Data is available upon request.

SBEToolbox: A Matlab Toolbox for Biological Network Analysis.

Science.gov (United States)

Konganti, Kranti; Wang, Gang; Yang, Ence; Cai, James J

2013-01-01

We present SBEToolbox (Systems Biology and Evolution Toolbox), an open-source Matlab toolbox for biological network analysis. It takes a network file as input, calculates a variety of centralities and topological metrics, clusters nodes into modules, and displays the network using different graph layout algorithms. Straightforward implementation and the inclusion of high-level functions allow the functionality to be easily extended or tailored through developing custom plugins. SBEGUI, a menu-driven graphical user interface (GUI) of SBEToolbox, enables easy access to various network and graph algorithms for programmers and non-programmers alike. All source code and sample data are freely available at https://github.com/biocoder/SBEToolbox/releases.

A-bomb survivor dosimetry update

International Nuclear Information System (INIS)

Loewe, W.E.

1982-06-01

A-bomb survivor data have been generally accepted as applicable. Also, the initial radiations have tended to be accepted as the dominant radiation source for all survivors. There was general acceptance of the essential reliability of both the biological effects data and the causative radiation dose values. There are considerations casting doubt on these acceptances, but very little quantification of th implied uncertainties has been attempted. The exception was A-bomb survivor dosimetry, where free-field kerma values for initial radiations were thought to be accurate to about 30%, and doses to individual survivors were treated as effectively error-free. In 1980, a major challenge to the accepted A-bomb survivor dosimetry was announced, and was quickly followed by a succession of explanations and displays showing the soundness of that challenge. In fact, a complete replacement set of free-field kerma values was provided which was suitable for use in constructing an entire new dosimetry for Hiroshima and Nagasaki. The new values showed many changes greater than the accepted 30% uncertainty. An approximate new dosimetry was indeed constructed, and used to convert existing leukemia cause-and-effect data from the old to the new dose values, by way of assessing the impact

Mining Functional Modules in Heterogeneous Biological Networks Using Multiplex PageRank Approach.

Science.gov (United States)

Li, Jun; Zhao, Patrick X

2016-01-01

Identification of functional modules/sub-networks in large-scale biological networks is one of the important research challenges in current bioinformatics and systems biology. Approaches have been developed to identify functional modules in single-class biological networks; however, methods for systematically and interactively mining multiple classes of heterogeneous biological networks are lacking. In this paper, we present a novel algorithm (called mPageRank) that utilizes the Multiplex PageRank approach to mine functional modules from two classes of biological networks. We demonstrate the capabilities of our approach by successfully mining functional biological modules through integrating expression-based gene-gene association networks and protein-protein interaction networks. We first compared the performance of our method with that of other methods using simulated data. We then applied our method to identify the cell division cycle related functional module and plant signaling defense-related functional module in the model plant Arabidopsis thaliana. Our results demonstrated that the mPageRank method is effective for mining sub-networks in both expression-based gene-gene association networks and protein-protein interaction networks, and has the potential to be adapted for the discovery of functional modules/sub-networks in other heterogeneous biological networks. The mPageRank executable program, source code, the datasets and results of the presented two case studies are publicly and freely available at http://plantgrn.noble.org/MPageRank/.

Activating and inhibiting connections in biological network dynamics

Directory of Open Access Journals (Sweden)

Knight Rob

2008-12-01

Full Text Available Abstract Background Many studies of biochemical networks have analyzed network topology. Such work has suggested that specific types of network wiring may increase network robustness and therefore confer a selective advantage. However, knowledge of network topology does not allow one to predict network dynamical behavior – for example, whether deleting a protein from a signaling network would maintain the network's dynamical behavior, or induce oscillations or chaos. Results Here we report that the balance between activating and inhibiting connections is important in determining whether network dynamics reach steady state or oscillate. We use a simple dynamical model of a network of interacting genes or proteins. Using the model, we study random networks, networks selected for robust dynamics, and examples of biological network topologies. The fraction of activating connections influences whether the network dynamics reach steady state or oscillate. Conclusion The activating fraction may predispose a network to oscillate or reach steady state, and neutral evolution or selection of this parameter may affect the behavior of biological networks. This principle may unify the dynamics of a wide range of cellular networks. Reviewers Reviewed by Sergei Maslov, Eugene Koonin, and Yu (Brandon Xia (nominated by Mark Gerstein. For the full reviews, please go to the Reviewers' comments section.

Dissolution rate and radiation dosimetry of metal tritides

International Nuclear Information System (INIS)

Jow, Hong-Nian; Cheng, Yung-Sung

1993-01-01

Metal tritides including titanium tritide (Ti 3 H x ) and erbium tritide (Er 3 H x ) have been used as components of neutron generators. These compounds can be released to the air as aerosols during fabrication, assembling and testing of components or in accidental or fugitive releases. As a result, workers could be exposed to these compounds by inhalation. A joint research project between SNL and ITRI (Inhalation Toxicology Research Institute) was initiated last fall to investigate the solubility of metal tritides, retention and translocation of inhaled particles and internal dosimetry of metal tritides. The current understanding of metal tritides and their radiation dosimetry for internal exposure are very limited. There is no provision in the ICRP-30 for tritium dosimetry in metal tritide form. However, a few papers in the literature suggested that the solubility of metal tritide could be low. The current radiation protection guidelines for metal tritide particles are based on the assumption that the biological behavior is similar to tritiated water which behaves like body fluid with a relative short biological half life (10 days). If the solubility of metal tritide is low, the biological half life of metal tritide particles and the dosimetry of inhalation exposure to these particles could be quite different from tritiated water. This would have major implications in current radiation protection guidelines for metal tritides Including annual limits of intakes and derived air concentrations. The preliminary results of metal tritide dissolution study at ITRI indicate that the solubility of titanium tritide is low. The outlines of the project, the preliminary results and future work will be discussed in presentation

Emergence of communication in socio-biological networks

CERN Document Server

Berea, Anamaria

2018-01-01

This book integrates current advances in biology, economics of information and linguistics research through applications using agent-based modeling and social network analysis to develop scenarios of communication and language emergence in the social aspects of biological communications. The book presents a model of communication emergence that can be applied both to human and non-human living organism networks. The model is based on economic concepts and individual behavior fundamental for the study of trust and reputation networks in social science, particularly in economics; it is also based on the theory of the emergence of norms and historical path dependence that has been influential in institutional economics. Also included are mathematical models and code for agent-based models to explore various scenarios of language evolution, as well as a computer application that explores language and communication in biological versus social organisms, and the emergence of various meanings and grammars in human ...

Activity Of EURADOS In Environmental Solid State Dosimetry

International Nuclear Information System (INIS)

Ranogajec-Komor, M.; Duch, M. A.; Haninger, T.

2015-01-01

Working Group 3 (WG3) of the European Radiation Dosimetry Group (EURADOS) carries out research projects and coordinated activities to advance the scientific understanding of environmental dosimetry and especially to promote the technical development of new methods in environmental monitoring. In this field of dosimetry, the measurement of small additional doses caused by artificial radiation on top of the natural environmental radiation is a challenge. Further, WG3 stimulates the organisation of intercomparison programmes and the definition of standards and recommendations in the field of environmental radiation monitoring (ERM). WG3 has played a significant role in the harmonisation of early warning dosimetry network stations in Europe and has organised 6 EURADOS intercomparison exercises; in which 42 institutions from 19 countries have participated. Today, about 5000 stations provide real-time dose rate data to a database run by the European Commission. Within WG3 a subgroup (S1) on spectrometry system was formed in 2013. Since then, WG3 has been involved in the field of spectrometry systems used both for dosimetric and spectrometric monitoring in the environment. A remarkable result of the WG3 - S1 is that many members contributed to the new European Joint Research Project 'Metrology for radiological early warning networks in Europe' which started in 2014. A second subgroup WG3 - S2 on passive dosimetry in ERM was inaugurated in 2014. To gain an overview of the passive dosimetry practice in ERM, WG3 - S2 decided to collect information by means of a questionnaire which has been send to European dosimetry services. One of the results was the identification of some open questions, problems in ERM (for example terminology, protocol of routine dosimetry, uncertainty assessment) which require clarification for harmonisation of ERM using passive dosimeters. Another result was that there exists a need for intercomparisons. The first intercomparison for passive

Biological dosimetry in patients with differenced thyroid carcinoma treated with Iodine-131

International Nuclear Information System (INIS)

Vallerga, M.; Taja, Maria R.; Radl, A.; Rojo, Ana M.; Deluca, G.; Di Giogio, Marina; Fadel, A.; Chebel, G.; Oneto, A.; Cabrejas, Mariana

2007-01-01

The differentiated thyroid carcinoma (DTC), constitutes the 90 % of the thyroid gland cancers. 80% of patients are cured after the initial therapy and 12% remained disease-free after successive treatments. The 24 patients included in this study represent a sample of the aforementioned 12% and 8%, with recurrence in the first decade post-treatment (local disease and/or recurrence at distance). The internal radiotherapy with 131 I in patients with DTC is used within the therapeutic schema as a step post-thyroidectomy. The success of the therapy is to get a lethal dose in the tumor tissue, which depends on the therapeutic activity and the retention of 131 I, without exceeding the dose of tolerance in healthy tissues. The most widespread way of administration is the empirical prescription which considers the clinical and laboratory parameters for its determination. In this work, the treatment protocol applied incorporates assessment by biological (DB) and internal (DI) dosimetry for estimating absorbed dose to the whole body and bone marrow to manage a personalized therapeutic dose for each patient. The biological dose estimation is based on the quantification of chromosomal aberrations, which is often referred to a dose-response curve in which lymphocytes are irradiated in vitro with 131 I, allowing to determine the dose in vivo of circulating lymphocytes patients [es

Network Biology (http://www.iaees.org/publications/journals/nb/online-version.asp

Directory of Open Access Journals (Sweden)

networkbiology@iaees.org

Full Text Available Network Biology ISSN 2220-8879 URL: http://www.iaees.org/publications/journals/nb/online-version.asp RSS: http://www.iaees.org/publications/journals/nb/rss.xml E-mail: networkbiology@iaees.org Editor-in-Chief: WenJun Zhang Aims and Scope NETWORK BIOLOGY (ISSN 2220-8879; CODEN NBEICS is an open access, peer-reviewed international journal that considers scientific articles in all different areas of network biology. It is the transactions of the International Society of Network Biology. It dedicates to the latest advances in network biology. The goal of this journal is to keep a record of the state-of-the-art research and promote the research work in these fast moving areas. The topics to be covered by Network Biology include, but are not limited to: •Theories, algorithms and programs of network analysis •Innovations and applications of biological networks •Ecological networks, food webs and natural equilibrium •Co-evolution, co-extinction, biodiversity conservation •Metabolic networks, protein-protein interaction networks, biochemical reaction networks, gene networks, transcriptional regulatory networks, cell cycle networks, phylogenetic networks, network motifs •Physiological networks •Network regulation of metabolic processes, human diseases and ecological systems •Social networks, epidemiological networks •System complexity, self-organized systems, emergence of biological systems, agent-based modeling, individual-based modeling, neural network modeling, and other network-based modeling, etc. We are also interested in short communications that clearly address a specific issue or completely present a new ecological network, food web, or metabolic or gene network, etc. Authors can submit their works to the email box of this journal, networkbiology@iaees.org. All manuscripts submitted to this journal must be previously unpublished and may not be considered for publication elsewhere at any time during review period of this journal

Biological monitoring of radiation exposure

Science.gov (United States)

Horneck, G.

1998-11-01

Complementary to physical dosimetry, biological dosimetry systems have been developed and applied which weight the different components of environmental radiation according to their biological efficacy. They generally give a record of the accumulated exposure of individuals with high sensitivity and specificity for the toxic agent under consideration. Basically three different types of biological detecting/monitoring systems are available: (i) intrinsic biological dosimeters that record the individual radiation exposure (humans, plants, animals) in measurable units. For monitoring ionizing radiation exposure, in situ biomarkers for genetic (e.g. chromosomal aberrations in human lymphocytes, germ line minisatellite mutation rates) or metabolic changes in serum, plasma and blood (e.g. serum lipids, lipoproteins, lipid peroxides, melatonin, antibody titer) have been used. (ii) Extrinsic biological dosimeters/indicators that record the accumulated dose in biological model systems. Their application includes long-term monitoring of changes in environmental UV radiation and its biological implications as well as dosimetry of personal UV exposure. (iii) Biological detectors/biosensors for genotoxic substances and agents such as bacterial assays (e.g. Ames test, SOS-type test) that are highly sensitive to genotoxins with high specificity. They may be applicable for different aspects in environmental monitoring including the International Space Station.

Assessment of network perturbation amplitudes by applying high-throughput data to causal biological networks

Directory of Open Access Journals (Sweden)

Martin Florian

2012-05-01

Full Text Available Abstract Background High-throughput measurement technologies produce data sets that have the potential to elucidate the biological impact of disease, drug treatment, and environmental agents on humans. The scientific community faces an ongoing challenge in the analysis of these rich data sources to more accurately characterize biological processes that have been perturbed at the mechanistic level. Here, a new approach is built on previous methodologies in which high-throughput data was interpreted using prior biological knowledge of cause and effect relationships. These relationships are structured into network models that describe specific biological processes, such as inflammatory signaling or cell cycle progression. This enables quantitative assessment of network perturbation in response to a given stimulus. Results Four complementary methods were devised to quantify treatment-induced activity changes in processes described by network models. In addition, companion statistics were developed to qualify significance and specificity of the results. This approach is called Network Perturbation Amplitude (NPA scoring because the amplitudes of treatment-induced perturbations are computed for biological network models. The NPA methods were tested on two transcriptomic data sets: normal human bronchial epithelial (NHBE cells treated with the pro-inflammatory signaling mediator TNFα, and HCT116 colon cancer cells treated with the CDK cell cycle inhibitor R547. Each data set was scored against network models representing different aspects of inflammatory signaling and cell cycle progression, and these scores were compared with independent measures of pathway activity in NHBE cells to verify the approach. The NPA scoring method successfully quantified the amplitude of TNFα-induced perturbation for each network model when compared against NF-κB nuclear localization and cell number. In addition, the degree and specificity to which CDK

Biological Dosimetry of X-rays by micronuclei study; Dosimetria Biologica de rayos-X mediante el estudio de micronucleos

Energy Technology Data Exchange (ETDEWEB)

Gomez, E; Silva, A; Navlet, J

1991-07-01

Biological dosimetry consists of estimating absorbed doses for people exposed to radiation by mean biological methods. Several indicators used are based in haematological, biochemical an cytogenetics data, although nowadays without doubt, the cytogenetic method is considered to be the most reliable, in this case, the study of micronuclei in peripheral blood lymphocytes citokinetics blocked can be related to absorbed dose through an experimental calibration curve. An experimental dose-response curve, using micronuclei assay for X-rays at 250 kVp, 43,79 rads/min and temperature 37 degree centigree has been produced. Experimental data is fitted to model Y=C+ {alpha}D+BD''2 where Y is the number of micronuclei per cell and D the dose. The curve is compared with those produced elsewhere. (Author) 24 refs.

Biological Dosimetry of X-rays by micronuclei study; Dosimetria Biologica de rayos-X mediante el estudio de micronucleos

Energy Technology Data Exchange (ETDEWEB)

Gomez, E.; Silva, A.; Navlet, J.

1991-07-01

Biological dosimetry consists of estimating absorbed doses for people exposed to radiation by mean biological methods. Several indicators used are based in haematological, biochemical an cytogenetics data, although nowadays without doubt, the cytogenetic method is considered to be the most reliable, in this case, the study of micronuclei in peripheral blood lymphocytes citokinetics blocked can be related to absorbed dose through an experimental calibration curve. An experimental dose-response curve, using micronuclei assay for X-rays at 250 kVp, 43,79 rads/min and temperature 37 degree centigree has been produced. Experimental data is fitted to model Y=C+ {alpha}D+BD''2 where Y is the number of micronuclei per cell and D the dose. The curve is compared with those produced elsewhere. (Author) 24 refs.

Chemical dosimetry principles in high dose dosimetry

International Nuclear Information System (INIS)

Mhatre, Sachin G.V.

2016-01-01

In radiation processing, activities of principal concern are process validation and process control. The objective of such formalized procedures is to establish documentary evidence that the irradiation process has achieved the desired results. The key element of such activities is inevitably a well characterized reliable dosimetry system that is traceable to recognized national and international dosimetry standards. Only such dosimetry systems can help establish the required documentary evidence. In addition, industrial radiation processing such as irradiation of foodstuffs and sterilization of health careproducts are both highly regulated, in particular with regard to dose. Besides, dosimetry is necessary for scaling up processes from the research level to the industrial level. Thus, accurate dosimetry is indispensable

Report of a consultants meeting on dosimetry in diagnostic radiology

International Nuclear Information System (INIS)

Pernicka, F.

1999-01-01

During its biennial meeting in 1996, the Standing Advisory Committee 'SSDL Scientific Committee', recommended extending the long experience of the Agency in the field of standardization and monitoring dosimetry calibrations at radiotherapy and radiation protection level for the Secondary Standard Dosimetry Laboratory (SSDL) Network, to the field of diagnostic x-ray dosimetry. It was emphasized that 'Measurements on diagnostic x-ray machines have become increasingly important and some SSDLs are involved in such measurements. The Agency's dosimetry laboratory should, therefore, have proper radiation sources available to provide traceable calibrations to the SSDLs'. The purpose of the consultants' meeting was to advise the Agency on dosimetry in diagnostic radiology. They were specifically requested to overview scientific achievements in the field and to give advice to the Agency on the need for further developments. The purpose of the consultants' meeting was to advise the Agency on dosimetry in diagnostic radiology. They were specifically requested to overview scientific achievements in the field and to give advice to the Agency on the need for further developments

Biological dosimetry: the potential use of radiation-induced apoptosis in human T-lymphocytes

International Nuclear Information System (INIS)

Menz, R.; Andres, R.; Larsson, B.; Ozsahin, M.; Crompton, N.E.A.; Trott, K.

1997-01-01

An assay for biological dosimetry based on the induction of apoptosis in human T-lymphocytes is described. Radiation-induced apoptosis was assessed by flow cytometric identification of cells displaying apoptosis-associated DNA condensation. CD4 and CD8 T-lymphocytes were analysed. They were recognized on the basis of their cell-surface antigens. Four parameters were measured for both cell types: cell size, granularity, antigen immunofluorescence and DNA content. Apoptosis was quantified as the fraction of CD4-, or CD8-positive cells with a characteristic reduction of cell size and DNA content. At doses below 1 Gy, levels of radiation-induced apoptosis increased for up to 5 days after irradiation. Optimal dose discrimination was observed 4 days after irradiation, at which time the dose-response curves were linear, with a slope of 8% ± 0.5% per 0.1 Gy. In controlled, dose-response experiments the lowest dose level at which the radiation-induced apoptosis frequency was still significantly above control was 0.05 Gy. After 5 days post-irradiation incubation, intra- and interdonor variations were measured and found to be similar; thus, apoptotic levels depend more on the dose than on the donor. The results demonstrate the potential of this assay as a biological dosimeter. (orig.)

High Energy Electron Dosimetry by Alanine/ESR Spectroscopy

International Nuclear Information System (INIS)

Chu, Sung Sil

1989-01-01

Dosimetry based on electron spin resonance(ESR) analysis of radiation induced free radicals in amino acids is relevant to biological dosimetry applications. Alanine detectors are without walls and are tissue equivalent. Therefore, alanine ESR dosimetry looks promising for use in the therapy level. The dose range of the alanine/ESR dosimetry system can be extended down to l Gy. In a water phantom the absorbed dose of electrons generated by a medical linear accelerator of different initial energies (6-21 MeV) and therapeutic dose levels(1-60 Gy) was measured. Furthermore, depth dose measurements carried out with alanine dosimeters were compared with ionization chamber measurements. As the results, the measured absorbed doses for shallow depth of initial electron energies above 15 MeV were higher by 2-5% than those calculated by nominal energy CE factors. This seems to be caused by low energy scattered beams generated from the scattering foil and electron cones of beam projecting device in medical linear accelerator

Network Analysis Tools: from biological networks to clusters and pathways.

Science.gov (United States)

Brohée, Sylvain; Faust, Karoline; Lima-Mendez, Gipsi; Vanderstocken, Gilles; van Helden, Jacques

2008-01-01

Network Analysis Tools (NeAT) is a suite of computer tools that integrate various algorithms for the analysis of biological networks: comparison between graphs, between clusters, or between graphs and clusters; network randomization; analysis of degree distribution; network-based clustering and path finding. The tools are interconnected to enable a stepwise analysis of the network through a complete analytical workflow. In this protocol, we present a typical case of utilization, where the tasks above are combined to decipher a protein-protein interaction network retrieved from the STRING database. The results returned by NeAT are typically subnetworks, networks enriched with additional information (i.e., clusters or paths) or tables displaying statistics. Typical networks comprising several thousands of nodes and arcs can be analyzed within a few minutes. The complete protocol can be read and executed in approximately 1 h.

EPR dosimetry - present and future

International Nuclear Information System (INIS)

Regulla, D.F.

1999-01-01

In the past, IAEA has played a central role in stipulating research and development in EPR high-dose standardisation as well as co-ordinating and organising international dose intercomparison programs, within the Member States of the United Nations from the mid-seventies till today. The future tasks of EPR dosimetry seem to tend towards different subjects such as biomarkers, biological radiation effects, post-accident dose reconstruction in the environment, and retrospective human dosimetry. The latter may be considered a promising tool for epidemiology on the way to re-define radiation risk of man for chronicle radiation exposures, based on e.g. South Ural civil population and radiation workers. There are on-going international activities in the field of standardising high-level dosimetry by the American Standards on Testing and Materials (ASTM), and the International Organisation of Standards (ISO) as well as those of the International Commission on Radiation Units and Measurements (ICRU) considering the establishment of relevant recommendations concerning industrial radiation processing, but also human dose reconstruction. (author)

100 years of solid state dosimetry and radiation protection dosimetry

International Nuclear Information System (INIS)

Bartlett, David T.

2008-01-01

The use of solid state detectors in radiation dosimetry has passed its 100th anniversary. The major applications of these detectors in radiation dosimetry have been in personal dosimetry, retrospective dosimetry, dating, medical dosimetry, the characterization of radiation fields, and also in microdosimetry and radiobiology research. In this introductory paper for the 15th International Conference, I shall speak of the history of solid state dosimetry and of the radiation measurement quantities that developed at the same time, mention some landmark developments in detectors and applications, speak a bit more about dosimetry and measurement quantities, and briefly look at the past and future

Dosimetry for photo-coagulation by the use of autofluorescence

Science.gov (United States)

Brodzinski, T.

1989-01-01

A basic problem when using lasers in medicine is that of dosimetry. The definition of the terms dose, effective value etc. will be dealt with in Chapter 2. This chapter is intended to give an insight into the problems of basic dosimetry and its technical realization within the field of photocoagulation, an established method used to treat the retina, or some skin diseases. Until now the coagulation process was assessed to be completed when the irradiated area became blanched. However in terms of dosimetry, it must be possible to predict or at least to monitor the biological effect using well-defined parameters for the laser or in achieving an objective measure for a feedback loop. In the case of coagulation, a prediction in this form is not possible. There are two ways of pro- ceeding further see Fig. 1. One can either determine the physical effect, i.e. temperature, by some kind of sensors, or even better, use some biological effect as a direct measure of the effective dose applied.

Biological dosimetry in radiological protection: dose response curves elaboration for 60Co and 137Cs

International Nuclear Information System (INIS)

Silva, Marcia Augusta da

1997-01-01

Ionizing radiation sources for pacific uses are being extensively utilized by modern society and the applications of these sources have raised the probability of the occurrence of accidents. The accidental exposition to radiation creates a necessity of the development of methods to evaluate dose quantity. This data could be obtained by the measurement of damage caused by radiation in the exposed person. The radiation dose can be estimated in exposed persons through physical methods (physical dosimetry) but the biological methods can't be dispensed, and among them, the cytogenetic one that makes use of chromosome aberrations (dicentric and centric ring) formed in peripheral blood lymphocytes (PBL) exposed to ionizing radiation. This method correlates the frequency of radioinduced aberrations with the estimated absorbed dose, as in vitro as in vivo, which is called cytogenetic dosimetry. By the introduction of improved new techniques in culture, in the interpretation of aberrations in the different analysers of slides and by the adoption of different statistical programs to analyse the data, significant differences are observed among laboratories in dose-response curves (calibration curves). The estimation of absorbed dose utilizing other laboratory calibration curves may introduce some uncertainties, so the International Atomic Energy Agency (IAEA) advises that each laboratory elaborates your own dose-response curve for cytogenetic dosimetry. The results were obtained from peripheral blood lymphocytes of the healthy and no-smoking donors exposed to 60 Co and 137 Cs radiation, with dose rate of 5 cGy.min. -1 . Six points of dose were determined 20,50,100,200,300,400 cGy and the control not irradiated. The analysed aberrations were of chromosomic type, dicentric and centric ring. The dose response curve for dicentrics were obtained by frequencies weighted in liner-quadratic mathematic model and the equation resulted were for 60 Co: Y = (3 46 +- 2.14)10 -4 cGy -1 + (3

Revue of some dosimetry and dose assessment European projects

International Nuclear Information System (INIS)

Bolognese-Milsztajn, T.; Frank, D.; Lacoste, V.; Pihet, P.

2006-01-01

Full text of publication follows: Within the 5. Framework Programme of the European Commission several project dealing with dosimetry and dose assessment for internal and external exposure have been supported. A revue of the results of some of them is presented in this paper. The EURADOS network which involved 50 dosimetry institutes in EUROPE has coordinated the project DOSIMETRY NETWORK: the main results achieved within this action are the following: - The release on the World Wide Web of the EURADOS Database of Dosimetry Research Facilities; - The realisation of the report 'Harmonization of Individual Monitoring (IM) in Europe'; - The continuation of the intercomparisons programme of environmental radiation monitoring systems; - The realisation of the report Cosmic radiation exposure of aircraft crew. The EVIDOS project aimed at evaluating state of the art dosimetry techniques in representative workplaces of the nuclear industry with complex mixed neutron-photon radiation fields. This paper summarises the main findings from a practical point of view. Conclusions and recommendations will be given concerning characterisation of radiation fields, methods to derive radiation protection quantities and dosimeters results. The IDEA project aimed to improve the assessment of incorporated radionuclides through developments of advanced in-vivo and bioassay monitoring techniques and making use of such enhancements for improvements in routine monitoring. The primary goal was to categorize those new developments regarding their potential and eligibility for the routine monitoring community. The costs of monitoring for internal exposures in the workplace are usually significantly greater than the equivalent costs for external exposures. There is therefore a need to ensure that resources are employed with maximum effectiveness. The EC-funded OMINEX (Optimisation of Monitoring for Internal Exposure) project has developed methods for optimising the design and implementation of

Novel topological descriptors for analyzing biological networks

Directory of Open Access Journals (Sweden)

Varmuza Kurt K

2010-06-01

Full Text Available Abstract Background Topological descriptors, other graph measures, and in a broader sense, graph-theoretical methods, have been proven as powerful tools to perform biological network analysis. However, the majority of the developed descriptors and graph-theoretical methods does not have the ability to take vertex- and edge-labels into account, e.g., atom- and bond-types when considering molecular graphs. Indeed, this feature is important to characterize biological networks more meaningfully instead of only considering pure topological information. Results In this paper, we put the emphasis on analyzing a special type of biological networks, namely bio-chemical structures. First, we derive entropic measures to calculate the information content of vertex- and edge-labeled graphs and investigate some useful properties thereof. Second, we apply the mentioned measures combined with other well-known descriptors to supervised machine learning methods for predicting Ames mutagenicity. Moreover, we investigate the influence of our topological descriptors - measures for only unlabeled vs. measures for labeled graphs - on the prediction performance of the underlying graph classification problem. Conclusions Our study demonstrates that the application of entropic measures to molecules representing graphs is useful to characterize such structures meaningfully. For instance, we have found that if one extends the measures for determining the structural information content of unlabeled graphs to labeled graphs, the uniqueness of the resulting indices is higher. Because measures to structurally characterize labeled graphs are clearly underrepresented so far, the further development of such methods might be valuable and fruitful for solving problems within biological network analysis.

Neutron spectrometry and dosimetry using NSDAAN

International Nuclear Information System (INIS)

Martinez B, M. R.; Vega C, H. R.; Ortiz R, J. M.

2009-10-01

The reconstruction of neutron spectra from count rates of a Bonner spheres spectrometric system is performed using various methods such as Monte Carlo methods, the parameterization and iterative methods. The weight of the Bonner spheres spectrometric system, the procedure for the reconstruction of the spectra, the need of an experienced user, the high consumer of time, the need of use a reconstruction code as the BUNKI, SAND, among others, and the resolution of the spectrum are some problems that this system presents. This has motivated the development of complementary procedures such as maximum entropy, genetic algorithms and artificial neural networks. In previous work, has reported a new method called robust design methodology of artificial neural networks, to construct various network topologies capable of solving the problems of neutron spectrometry and dosimetry, however, due to the newness of this technology, be noted that there are not tools to end-user that allow test and validate the designed networks. This paper presents a software for the neutron spectrometry and dosimetry, designed from the information extracted of an artificial neural network designed by robust design methodology of artificial neural networks. This tool has the following characteristics: was designed in a user graphical interface easy to use, requires not knowledge of neural networks or neutron spectrometry by the user; execution speed of the application; unlike the deconvolution codes are not required to select an initial spectrum for the spectrum reconstruction; as an additional element to this tool, besides the spectrum, the calculation is performed simultaneous to H(10), E, H p , s (10,θ) from just counting rates from a Bonner spheres spectrometric system. (author)

Exposure to mobile telecommunication networks assessed using personal dosimetry and well-being in children and adolescents: the German MobilEe-study.

Science.gov (United States)

Thomas, Silke; Kühnlein, Anja; Heinrich, Sabine; Praml, Georg; von Kries, Rüdiger; Radon, Katja

2008-11-04

Despite the increase of mobile phone use in the last decade and the growing concern whether mobile telecommunication networks adversely affect health and well-being, only few studies have been published that focussed on children and adolescents. Especially children and adolescents are important in the discussion of adverse health effects because of their possibly higher vulnerability to radio frequency electromagnetic fields. We investigated a possible association between exposure to mobile telecommunication networks and well-being in children and adolescents using personal dosimetry. A population-based sample of 1.498 children and 1.524 adolescents was assembled for the study (response 52%). Participants were randomly selected from the population registries of four Bavarian (South of Germany) cities and towns with different population sizes. During a Computer Assisted Personal Interview data on participants' well-being, socio-demographic characteristics and potential confounder were collected. Acute symptoms were assessed three times during the study day (morning, noon, evening).Using a dosimeter (ESM-140 Maschek Electronics), we obtained an exposure profile over 24 hours for three mobile phone frequency ranges (measurement interval 1 second, limit of determination 0.05 V/m) for each of the participants. Exposure levels over waking hours were summed up and expressed as mean percentage of the ICNIRP (International Commission on Non-Ionizing Radiation Protection) reference level. In comparison to non-participants, parents and adolescents with a higher level of education who possessed a mobile phone and were interested in the topic of possible adverse health effects caused by mobile telecommunication network frequencies were more willing to participate in the study. The median exposure to radio frequency electromagnetic fields of children and adolescents was 0.18% and 0.19% of the ICNIRP reference level respectively. In comparison to previous studies this is one of

Exposure to mobile telecommunication networks assessed using personal dosimetry and well-being in children and adolescents: the German MobilEe-study

Directory of Open Access Journals (Sweden)

von Kries Rüdiger

2008-11-01

Full Text Available Abstract Background Despite the increase of mobile phone use in the last decade and the growing concern whether mobile telecommunication networks adversely affect health and well-being, only few studies have been published that focussed on children and adolescents. Especially children and adolescents are important in the discussion of adverse health effects because of their possibly higher vulnerability to radio frequency electromagnetic fields. Methods We investigated a possible association between exposure to mobile telecommunication networks and well-being in children and adolescents using personal dosimetry. A population-based sample of 1.498 children and 1.524 adolescents was assembled for the study (response 52%. Participants were randomly selected from the population registries of four Bavarian (South of Germany cities and towns with different population sizes. During a Computer Assisted Personal Interview data on participants' well-being, socio-demographic characteristics and potential confounder were collected. Acute symptoms were assessed three times during the study day (morning, noon, evening. Using a dosimeter (ESM-140 Maschek Electronics, we obtained an exposure profile over 24 hours for three mobile phone frequency ranges (measurement interval 1 second, limit of determination 0.05 V/m for each of the participants. Exposure levels over waking hours were summed up and expressed as mean percentage of the ICNIRP (International Commission on Non-Ionizing Radiation Protection reference level. Results In comparison to non-participants, parents and adolescents with a higher level of education who possessed a mobile phone and were interested in the topic of possible adverse health effects caused by mobile telecommunication network frequencies were more willing to participate in the study. The median exposure to radio frequency electromagnetic fields of children and adolescents was 0.18% and 0.19% of the ICNIRP reference level respectively

Towards the understanding of network information processing in biology

Science.gov (United States)

Singh, Vijay

Living organisms perform incredibly well in detecting a signal present in the environment. This information processing is achieved near optimally and quite reliably, even though the sources of signals are highly variable and complex. The work in the last few decades has given us a fair understanding of how individual signal processing units like neurons and cell receptors process signals, but the principles of collective information processing on biological networks are far from clear. Information processing in biological networks, like the brain, metabolic circuits, cellular-signaling circuits, etc., involves complex interactions among a large number of units (neurons, receptors). The combinatorially large number of states such a system can exist in makes it impossible to study these systems from the first principles, starting from the interactions between the basic units. The principles of collective information processing on such complex networks can be identified using coarse graining approaches. This could provide insights into the organization and function of complex biological networks. Here I study models of biological networks using continuum dynamics, renormalization, maximum likelihood estimation and information theory. Such coarse graining approaches identify features that are essential for certain processes performed by underlying biological networks. We find that long-range connections in the brain allow for global scale feature detection in a signal. These also suppress the noise and remove any gaps present in the signal. Hierarchical organization with long-range connections leads to large-scale connectivity at low synapse numbers. Time delays can be utilized to separate a mixture of signals with temporal scales. Our observations indicate that the rules in multivariate signal processing are quite different from traditional single unit signal processing.

Social network size relates to developmental neural sensitivity to biological motion

Directory of Open Access Journals (Sweden)

L.A. Kirby

2018-04-01

Full Text Available The ability to perceive others’ actions and goals from human motion (i.e., biological motion perception is a critical component of social perception and may be linked to the development of real-world social relationships. Adult research demonstrates two key nodes of the brain’s biological motion perception system—amygdala and posterior superior temporal sulcus (pSTS—are linked to variability in social network properties. The relation between social perception and social network properties, however, has not yet been investigated in middle childhood—a time when individual differences in social experiences and social perception are growing. The aims of this study were to (1 replicate past work showing amygdala and pSTS sensitivity to biological motion in middle childhood; (2 examine age-related changes in the neural sensitivity for biological motion, and (3 determine whether neural sensitivity for biological motion relates to social network characteristics in children. Consistent with past work, we demonstrate a significant relation between social network size and neural sensitivity for biological motion in left pSTS, but do not find age-related change in biological motion perception. This finding offers evidence for the interplay between real-world social experiences and functional brain development and has important implications for understanding disorders of atypical social experience. Keywords: Biological motion, Social networks, Middle childhood, Neural specialization, Brain-behavior relations, pSTS

Discriminative topological features reveal biological network mechanisms

Directory of Open Access Journals (Sweden)

Levovitz Chaya

2004-11-01

Full Text Available Abstract Background Recent genomic and bioinformatic advances have motivated the development of numerous network models intending to describe graphs of biological, technological, and sociological origin. In most cases the success of a model has been evaluated by how well it reproduces a few key features of the real-world data, such as degree distributions, mean geodesic lengths, and clustering coefficients. Often pairs of models can reproduce these features with indistinguishable fidelity despite being generated by vastly different mechanisms. In such cases, these few target features are insufficient to distinguish which of the different models best describes real world networks of interest; moreover, it is not clear a priori that any of the presently-existing algorithms for network generation offers a predictive description of the networks inspiring them. Results We present a method to assess systematically which of a set of proposed network generation algorithms gives the most accurate description of a given biological network. To derive discriminative classifiers, we construct a mapping from the set of all graphs to a high-dimensional (in principle infinite-dimensional "word space". This map defines an input space for classification schemes which allow us to state unambiguously which models are most descriptive of a given network of interest. Our training sets include networks generated from 17 models either drawn from the literature or introduced in this work. We show that different duplication-mutation schemes best describe the E. coli genetic network, the S. cerevisiae protein interaction network, and the C. elegans neuronal network, out of a set of network models including a linear preferential attachment model and a small-world model. Conclusions Our method is a first step towards systematizing network models and assessing their predictability, and we anticipate its usefulness for a number of communities.

The sensitivity analysis of tooth enamel to the absorbed dose for the application to EPR dosimetry

International Nuclear Information System (INIS)

Hong, Dae Seok; Lee, Kun Jai; Cho, Young Hwan

2002-01-01

Electron Paramagnetic Resonance (EPR) spectroscopy is one of the methods applicable to retrospective dosimetry. The retrospective dosimetry is a process that is a part of dose reconstruction for estimation of exposed dose occurred years before the estimation. Many techniques can be used to the retrospective dosimetry. As a physical method, EPR analysis of biological material measures the quantity of free radicals generated in the material from the interaction of radiation and material. Since the later 80s, in many countries, EPR dosimetry with tooth enamel has been studied and applied for the retrospective dosimetry. In the consideration of the biological materials for EPR dosimetry, human fingernail, hair, bone and tooth are generally considered. The tooth can be separated as enamel, dentine and cementum. Among the three parts, enamel shows the best sensitivity to the absorbed dose and is most widely used. In this study, the characteristics of tooth enamel for EPR dosimetry is examined and experimented. At the experiment, for easy separation, tooth was cut into 4 parts and then each part is treated by ultrasonic vibration in NaOH liquid to reduce mechanically induced noise in the corresponding signal. After the separation of the enamel from dentine, background EPR signal is measured and then radiation-induced EPR spectrum is estimated

On the origin of distribution patterns of motifs in biological networks

Directory of Open Access Journals (Sweden)

Lesk Arthur M

2008-08-01

Full Text Available Abstract Background Inventories of small subgraphs in biological networks have identified commonly-recurring patterns, called motifs. The inference that these motifs have been selected for function rests on the idea that their occurrences are significantly more frequent than random. Results Our analysis of several large biological networks suggests, in contrast, that the frequencies of appearance of common subgraphs are similar in natural and corresponding random networks. Conclusion Indeed, certain topological features of biological networks give rise naturally to the common appearance of the motifs. We therefore question whether frequencies of occurrences are reasonable evidence that the structures of motifs have been selected for their functional contribution to the operation of networks.

Radiation effects analysis in a group of interventional radiologists using biological and physical dosimetry methods

Energy Technology Data Exchange (ETDEWEB)

Ramos, M., E-mail: WEMLmirapas@iqn.upv.e [Department of Chemical and Nuclear Engineering, Polytechnic University of Valencia, Camino de Vera s/n, 46022 Valencia (Spain); Montoro, A.; Almonacid, M. [Radiation Protection Service, Hospital Universitario La Fe Valencia (Spain); Ferrer, S. [Department of Chemical and Nuclear Engineering, Polytechnic University of Valencia, Camino de Vera s/n, 46022 Valencia (Spain); Barquinero, J.F. [Biological Dosimetry Service, Unit of Anthropology, Department of Animal and Vegetable Biology and Ecology, Universitat Autonoma de Barcelona (UAB) (Spain); Tortosa, R. [Radiation Protection Service, Hospital Universitario La Fe Valencia (Spain); Verdu, G. [Department of Chemical and Nuclear Engineering, Polytechnic University of Valencia, Camino de Vera s/n, 46022 Valencia (Spain); Rodriguez, P. [Biological Dosimetry Service, Unit of Anthropology, Department of Animal and Vegetable Biology and Ecology, Universitat Autonoma de Barcelona (UAB) (Spain); Barrios, L.L. [Department of Physiology and Cellular Biology, Unit of Cellular Biology (UAB) (Spain); Villaescusa, J.I. [Radiation Protection Service, Hospital Universitario La Fe Valencia (Spain)

2010-08-15

excess radio-induced risk of leukemia in the group under study. Finally, the maximum radiological detriment in the group, evaluated as the total number of radio-induced cancers using physical dosimetry, has been of 2.18/1000 person-year (skin and leukemia), and using biological dosimetry of 9.20/1000 PY (leukemia). As a conclusion, this study has provided an assessment of the non-deterministic effects (rate of radio-induced cancer incidence) attributable to the group under study due to their professional activity.

Continuum Modeling of Biological Network Formation

KAUST Repository

Albi, Giacomo; Burger, Martin; Haskovec, Jan; Markowich, Peter A.; Schlottbom, Matthias

2017-01-01

We present an overview of recent analytical and numerical results for the elliptic–parabolic system of partial differential equations proposed by Hu and Cai, which models the formation of biological transportation networks. The model describes

Dosimetry Service

CERN Multimedia

2006-01-01

Cern Staff and Users can now consult their dose records for an individual or an organizational unit with HRT. Please see more information on our web page: http://cern.ch/rp-dosimetry Dosimetry Service is open every morning from 8.30 - 12.00. Closed in the afternoons. We would like to remind you that dosimeters cannot be sent to customers by internal mail. Short-term dosimeters (VCT's) must always be returned to the Service after the use and must not be left on the racks in the experimental areas or in the secretariats. Dosimetry Service Tel. 7 2155 Dosimetry.service@cern.ch http://cern.ch/rp-dosimetry

The application of artificial neural networks to TLD dose algorithm

International Nuclear Information System (INIS)

Moscovitch, M.

1997-01-01

We review the application of feed forward neural networks to multi element thermoluminescence dosimetry (TLD) dose algorithm development. A Neural Network is an information processing method inspired by the biological nervous system. A dose algorithm based on a neural network is a fundamentally different approach from conventional algorithms, as it has the capability to learn from its own experience. The neural network algorithm is shown the expected dose values (output) associated with a given response of a multi-element dosimeter (input) many times.The algorithm, being trained that way, eventually is able to produce its own unique solution to similar (but not exactly the same) dose calculation problems. For personnel dosimetry, the output consists of the desired dose components: deep dose, shallow dose, and eye dose. The input consists of the TL data obtained from the readout of a multi-element dosimeter. For this application, a neural network architecture was developed based on the concept of functional links network (FLN). The FLN concept allowed an increase in the dimensionality of the input space and construction of a neural network without any hidden layers. This simplifies the problem and results in a relatively simple and reliable dose calculation algorithm. Overall, the neural network dose algorithm approach has been shown to significantly improve the precision and accuracy of dose calculations. (authors)

Cellular dosimetry in nuclear medicine imaging: training

International Nuclear Information System (INIS)

Gardin, I.; Faraggi, M.; Stievenart, J.L.; Le Guludec, D.; Bok, B.

1998-01-01

The radionuclides used in nuclear medicine imaging emit not only diagnostically useful photons, but also energy electron emissions, responsible for dose heterogeneity at the cellular level. The mean dose delivered to the cell nucleus by electron emissions of 99m Tc, 123 I, 111 In, 67 Ga, and 201 Tl, has been calculated, for the cell nucleus, a cytoplasmic and a cell membrane distribution of radioactivity. This model takes into account both the self-dose which results from the radionuclide located in the target cell, and the cross-dose, which comes from the surrounding cells. The results obtained by cellular dosimetry (D cel ) have been compared with those obtained with conventional dosimetry (D conv ), by assuming the same amount of radioactivity per cell. Cellular dosimetry shows, for a cytoplasmic and a cell membrane distributions of radioactivity, that the main contribution to the dose to the cell nucleus, comes from the surrounding cells. On the other hand, for a cell nucleus distribution of radioactivity, the self-dose is not negligible and may be the main contribution. The comparison between cellular and conventional dosimetry shows that D cel /D conv ratio ranges from 0.61 and O.89, in case of a cytoplasmic and a cell membrane distributions of radioactivity, depending on the radionuclide and cell dimensions. Thus, conventional dosimetry slightly overestimates the mean dose to the cell nucleus. On the other hand, D cel /D conv ranges from 1.1 to 75, in case of a cell nucleus distribution of radioactivity. Conventional dosimetry may strongly underestimates the absorbed dose to the nucleus, when radioactivity is located in the nucleus. The study indicates that in nuclear medicine imaging, cellular dosimetry may lead to a better understanding of biological effects of radiopharmaceuticals. (authors)

Network science of biological systems at different scales: A review

Science.gov (United States)

Gosak, Marko; Markovič, Rene; Dolenšek, Jurij; Slak Rupnik, Marjan; Marhl, Marko; Stožer, Andraž; Perc, Matjaž

2018-03-01

Network science is today established as a backbone for description of structure and function of various physical, chemical, biological, technological, and social systems. Here we review recent advances in the study of complex biological systems that were inspired and enabled by methods of network science. First, we present

Preliminary study on biological dosimetry using alkaline single cell gel electrophoresis of human peripheral lymphocytes

International Nuclear Information System (INIS)

Liu Qingjie; Lu Xue; Feng Jiangbing; Chen Deqing; Chen Xiaosui

2006-01-01

Objective: To explore the feasibility of alkaline single cell gel electrophoresis (SCGE) in biological dosimetry of ionizing radiation. Methods: Normal peripheral blood samples from two healthy males were exposed to different doses coblat-60 gamma-rays, ranged from 0 to 5 Gy, and the tail length (TL) and Oliver tail moment (TM) of the lymphocytes were analyzed with SCGE. The dose-effect curves of TL and TM were fitted respectively. The TL and TM of lymphocytes for eight radiation workers were analyzed with SCGE, cumulative doses were estimated using the fitted TL and TM equations, and then compared with the recorded monitoring doses. Results: The TLs or TMs of normal human lymphocytes were increased with the irradiation doses, and its relationship can be fitted with a linear-quadratic equations: Y=13.59 + 20.87X - 2.27 X 2 for TL, and Y = 8.50 + 15.04X - 1.43X 2 for TM, respectively (Y denotes TL or TM value, X is radiation dose). The doses estimated with TM equation were closer to the recorded monitoring doses than that with TL equation. Conclusions: The TM in lymphocytes analyzed with SCGE is a promising radiation biological dosimeter. (authors)

Dosimetry system 1986

International Nuclear Information System (INIS)

Woolson, William A.; Egbert, Stephen D.; Gritzner, Michael L.

1987-01-01

In May 1983, the authors proposed a dosimetry system for use by the Radiation Effects Research Foundation (RERF) that would incorporate the new findings and calculations of the joint United States - Japan working groups on the reassessment of A-bomb dosimetry. The proposed dosimetry system evolved from extensive discussions with RERF personnel, numerous meetings of the scientists from Japan and the United States involved in the dosimetry reassessment research, and requirements expressed by epidemiologists and radiobiologists on the various review panels. The dosimetry system proposed was based on considerations of the dosimetry requirements for the normal work of RERF and for future research in radiobiology, the computerized input data on A-bomb survivors available in the RERF data base, the level of detail, precision, and accuracy of various components of the dosimetric estimates, and the computer resources available at RERF in Hiroshima. These discussions and our own experience indicated that, in light of the expansion of computer and radiation technologies and the desire for more detail in the dosimetry, an entirely new approach to the dosimetry system was appropriate. This resulted in a complete replacement of the T65D system as distinguished from a simpler approach involving a renormalization of T65D parameters to reflect the new dosimetry. The proposed dosimetry system for RERF and the plan for implementation was accepted by the Department of Energy (DOE) Working Group on A-bomb Dosimetry chaired by Dr. R.F. Christy. The dosimetry system plan was also presented to the binational A-bomb dosimetry review groups for critical comment and was discussed at joint US-Japan workshop. A prototype dosimetry system incorporating preliminary dosimetry estimates and applicable to only a limited set of A-bomb survivors was installed on the RERF computer system in the fall of 1984. This system was successfully operated at RERF and provided an initial look at the impact of

SSDL newsletter. No. 25[Secondary Standard Dosimetry Laboratories

Energy Technology Data Exchange (ETDEWEB)

NONE

1986-10-01

In April 1976 the IAEA and the WHO concluded a Working Arrangement concerning the establishment and operation of a network of Secondary Standard Dosimetry Laboratories, based on a relationship agreement between the two organizations of 1959. This Working Arrangement was the outcome of rather lengthy consultations on the subject which rooted in recommendations of an experts' meeting on SSDL Activities, held in Rio de Janeiro 1974, and which put the bulk of responsibility for running the network on WHO. In particular, it was agreed then that WHO would provide the secretariat for the Network and be responsible for the SSDL Advisory Group of experts, the terms of reference of which were laid down in a separate document. After about ten years of operation of the SSDL Network it was felt that revision of the Working Arrangement should be considered, taking care of the actual involvement of the two organizations in the project and providing a more fairly balanced share of responsibilities between the IAEA and WHO secretaries of the Network. The new Arrangement was drafted during 1985 and signed by the two Directors General in October/November 1985. Upon recommendation of an SSDL Advisory Group which met in November 1984 the Directors General of IAEA and WHO appointed 6 scientists as members of a standing SSDL Scientific Committee. The appointment is for a period of three years. In its terms of reference the functions of this Committee are defined as follows: to provide technical advice to the Directors General of the IAEA and WHO regarding the programme of work of the IAEA/WHO Network of Secondary Standard Dosimetry Laboratories; to assist the Network Secretariat with scientific advice and to regularly review the work undertaken by members of the SSDL Network; to make recommendations on the techniques for carrying out intercomparisons between SSDLs; to advise and make recommendations on the techniques for establishing and maintaining traceability to the Primary Standard

Estimation of dose ionizing radiation exposure by biological dosimetry; Estimación de dosis de exposición a radiaciones ionizantes mediante dosimetría biológica

Energy Technology Data Exchange (ETDEWEB)

Herranz Crespo, R.; Moreno Domene, M.; Prieto Rodríguez, M.J.; Lozano Barriuso, M.A.

2014-07-01

the Biological Dosimetry Laboratory of the Radiopathology Centre, at Hospital General Universitario Gregorio Marañón, is the only national laboratory accredited by UNE-EN ISO/IEC 17025:2005, and scope to ISO 19238:2004 (Radiation protection – Performance criteria for service laboratories performing biological dosimetry by citogenetics), for dose assessment by the dycentrics assay, has great experience with more than 100 real cases analyzed, and several population studies. This paper describes experience and results from more than 20 years of work under the Reference level II Centre for the attention of irradiated and/or contaminated people. [Spanish] El Laboratorio de Dosimetría Biológica, del Centro de Radiopatología del Hospital General Universitario Gregorio Marañón, es el único en España que dispone de acreditación internacional por la norma UNE-EN ISO/IEC 17025:2005 con alcance a la norma ISO 19238:2004 (Radiationprotection – Performance criteria for service laboratories performing biological dosimetry by citogenetics), para la realización de estimaciones dosimétricas mediante la técnica de dicéntricos, dispone de amplia experiencia en su aplicación en los 110 casos reales analizados, y en diferentes estudios de poblaciones españolas. En este trabajo se describe la experiencia del laboratorio y los resultados obtenidos en los más de 20 años de funcionamiento en el Centro de Referencia de nivel II para la atención a irradiados y/o contaminados por radiaciones ionizantes.

An improved in vitro micronucleus assay to biological dosimetry

International Nuclear Information System (INIS)

Ocampo, Ivette Z.; Okazaki, Kayo; Vieira, Daniel P.

2013-01-01

The biological dosimetry is widely used to estimate the absorbed dose in people occupationally or accidentally exposed to the radiation for a better medical treatment, minimizing the harmful effects. Many techniques and methods have been proposed to detect and quantify the radioinduced lesions in genetic material, among them, the micronucleus (MN) assay. In the present study, we proposed an improved in vitro micronucleus technique that is rapid, sensitive and with minor cell manipulations. Assays were carried out with human tumor cells (MCF-7) seeded (3x10 4 cells) in slides placed into Petri dishes. Adherent cells were maintained with RPMI medium, supplemented with fetal calf serum, 1 % antibiotics, cytochalasin B (2 μg/mL), and incubated at 37 deg C in the presence of 5% CO2 for 72h. Cells were pre-treated for 24h with aminoguanidine, a nitric oxide synthase inhibitor. Nitric oxide is an intracellular free-radical, involved in DNA double-strand break repair mechanisms. After incubation, adherent cells on slides were briefly fixed with paraformaldehyde and stained with acridine orange (100 μg/mL) for analysis through fluorescence microscopy. Dye fluorescence permitted accurate discrimination between nuclei and micronuclei (bright green) and cytoplasm (red), and made possible a faster counting of binucleated cells. Aminoguanidine (2 mM) induced significant increase (p< 0.05) in frequencies of binucleated cells with micronuclei and in the number of micronuclei per binucleated cell. Data showed that proposed modifications permit to understand an early aspect of NO inhibition and suggested an improved protocol to MN assays. (author)

Establishment of the Dosicard operational dosimetry system in a nuclear studies center

International Nuclear Information System (INIS)

Banchetry, C.

2001-01-01

Since the decree of March 1999, each employer of the French nuclear industry must set an operational dosimetry in its company. The method is based on electronic dosimeters equipped with alarms and worn by all the employees. The dosimeters are linked to a computer network. The operational dosimetry is recommended, to optimize the protection of workers and limit the doses received, to respect the principle of equity between the workers, to preserve a ''margin of dose'' in case of any unexpected event. The CEA executives have decided to use the EURISYS MESURES DOSICARD as an operational and complementary dosimetry tool. (author)

Protocol for X-ray dosimetry and exposure arrangements employed in studies of late somatic effects in mammals

International Nuclear Information System (INIS)

Zoetelief, J.; Kogel, A.J. van der; Broerse, J.J.; Scarpa, G.; Dixon-Brown, A.

1985-01-01

A number of European laboratories studying the late effects of ionizing radiation in animals have established an effective cooperation within the European Late Effects Project Group (EULEP) since 1970. To facilitate the exchange of biological results several techniques, including quality control of the experimental animals, pathology and dosimetry, have to be standardized. The most important aspects of the procedures for X-irradiation and dosimetry of small animals are summarized. These include recommendations on irradiation conditions, dosimetry methods, characteristics of phantoms and factors affecting X-ray dosimetry. X-irradiation procedures employed by the participating institutes are described and the results of five X-ray dosimetry intercomparisons are reported. The introduction of a common dosimetry protocol has resulted in improvements in exposure arrangements and absolute dosimetry. (author)

A contribution to the study of the biological dosimetry in clinical radiopathology

International Nuclear Information System (INIS)

Eston, T.E. de.

1983-01-01

The effects of total body irradiation with different radiation doses from a 4MeV linear accelerator on organs and tissues of adult male rabbits were studied. Doses of 0.50, 2.00, 6.00 and 8.00 Gy were applied. Different organic parameters were evaluated before and after various periods of the post-irradiation time. Mortality did not occured for 0.50 or 2.00 Gy, but morbility was greater in comparison with the control; sexual potency was maintained. 'Impotentia colundi' occured with 6 Gy. A small loss of weight occured with 2.00 Gy and a higher loss for 6.00 Gy, with later recovery. Blood parameters varied even for lowest dose. Alterations were evident in the bone marrow activity for 2.00 and 6.00 Gy. Spermatides, spermatocytes and mature spermatozoids were affect even by low doses, the laters loosing motility. Significant difference was observed in the relation DNA/RNA for irradiated-and control animals. The results showed that T3 asssay could serve as 'biological indicator' of irradiation in a period of at least 7 hours and for doses of 4Gy or more. Using the kinetic method, an increase of glutamic oxalacetic transaminase (GOT) seric levels was observed for 6.00 Gy after 7 hours and a decrease for the glutamic pyruvic transaminase (GPT). Fasting glycemy and catecolamines urinary extraction were not statiscally significants. The study of chromosomal aberrations that occur in lymphocytes after 'in vitro' irradiation showed that this is at the present moment the most efficient method for biological dosimetry. (M.A.) [pt

Dense module enumeration in biological networks

Science.gov (United States)

Tsuda, Koji; Georgii, Elisabeth

2009-12-01

Analysis of large networks is a central topic in various research fields including biology, sociology, and web mining. Detection of dense modules (a.k.a. clusters) is an important step to analyze the networks. Though numerous methods have been proposed to this aim, they often lack mathematical rigorousness. Namely, there is no guarantee that all dense modules are detected. Here, we present a novel reverse-search-based method for enumerating all dense modules. Furthermore, constraints from additional data sources such as gene expression profiles or customer profiles can be integrated, so that we can systematically detect dense modules with interesting profiles. We report successful applications in human protein interaction network analyses.

Dense module enumeration in biological networks

International Nuclear Information System (INIS)

Tsuda, Koji; Georgii, Elisabeth

2009-01-01

Analysis of large networks is a central topic in various research fields including biology, sociology, and web mining. Detection of dense modules (a.k.a. clusters) is an important step to analyze the networks. Though numerous methods have been proposed to this aim, they often lack mathematical rigorousness. Namely, there is no guarantee that all dense modules are detected. Here, we present a novel reverse-search-based method for enumerating all dense modules. Furthermore, constraints from additional data sources such as gene expression profiles or customer profiles can be integrated, so that we can systematically detect dense modules with interesting profiles. We report successful applications in human protein interaction network analyses.

A European network of experts with direct responsibility for monitoring and dosimetry after a deliberate release of radioactive material or a deliberate radiation exposure

International Nuclear Information System (INIS)

Rahola, Tua; Muikku, Maarit; Pellow, Peter G.D.; Etherington, George; Hodgson, Alan; Youngman, Mike J.; Le Guen, Bernard; Berard, Philippe; Lopez, Maria A.

2008-01-01

In the event of an accidental or deliberate release of radionuclides to the environment, individual monitoring and dose assessment may be needed for large numbers of people. The consequences of such incidents are not limited by national boundaries. However, within the European Union (EU), there has not been any coordinated strategy for individual monitoring and dose assessment. CONRAD (CO-ordination Action for Radiation Dosimetry) is an EC 6 th Framework Programme Co-ordination Action sponsored by EURADOS (the European Radiation Dosimetry Group, http://www.eurados.org). The objective of Task 5.4 of Work Package 5 of the CONRAD project, coordinated by HPA (UK) and STUK (Finland), is the development of a network of people and organisations with responsibilities for emergency monitoring of emergency services personnel and members of the public. The network (named EUREMON) aims to promote sharing of information between countries on plans and arrangements for individual monitoring. It currently has 51 individual members from 22 EU countries, 8 non-EU countries and two international organisations. After it was established, the network was used in a survey of plans and arrangements for emergency personal monitoring in EU countries. Information is also being compiled on portable and transportable monitoring facilities and equipment in the EU. (author)

Using biological networks to improve our understanding of infectious diseases

Directory of Open Access Journals (Sweden)

Nicola J. Mulder

2014-08-01

Full Text Available Infectious diseases are the leading cause of death, particularly in developing countries. Although many drugs are available for treating the most common infectious diseases, in many cases the mechanism of action of these drugs or even their targets in the pathogen remain unknown. In addition, the key factors or processes in pathogens that facilitate infection and disease progression are often not well understood. Since proteins do not work in isolation, understanding biological systems requires a better understanding of the interconnectivity between proteins in different pathways and processes, which includes both physical and other functional interactions. Such biological networks can be generated within organisms or between organisms sharing a common environment using experimental data and computational predictions. Though different data sources provide different levels of accuracy, confidence in interactions can be measured using interaction scores. Connections between interacting proteins in biological networks can be represented as graphs and edges, and thus studied using existing algorithms and tools from graph theory. There are many different applications of biological networks, and here we discuss three such applications, specifically applied to the infectious disease tuberculosis, with its causative agent Mycobacterium tuberculosis and host, Homo sapiens. The applications include the use of the networks for function prediction, comparison of networks for evolutionary studies, and the generation and use of host–pathogen interaction networks.

Revisiting the variation of clustering coefficient of biological networks suggests new modular structure.

Science.gov (United States)

Hao, Dapeng; Ren, Cong; Li, Chuanxing

2012-05-01

A central idea in biology is the hierarchical organization of cellular processes. A commonly used method to identify the hierarchical modular organization of network relies on detecting a global signature known as variation of clustering coefficient (so-called modularity scaling). Although several studies have suggested other possible origins of this signature, it is still widely used nowadays to identify hierarchical modularity, especially in the analysis of biological networks. Therefore, a further and systematical investigation of this signature for different types of biological networks is necessary. We analyzed a variety of biological networks and found that the commonly used signature of hierarchical modularity is actually the reflection of spoke-like topology, suggesting a different view of network architecture. We proved that the existence of super-hubs is the origin that the clustering coefficient of a node follows a particular scaling law with degree k in metabolic networks. To study the modularity of biological networks, we systematically investigated the relationship between repulsion of hubs and variation of clustering coefficient. We provided direct evidences for repulsion between hubs being the underlying origin of the variation of clustering coefficient, and found that for biological networks having no anti-correlation between hubs, such as gene co-expression network, the clustering coefficient doesn't show dependence of degree. Here we have shown that the variation of clustering coefficient is neither sufficient nor exclusive for a network to be hierarchical. Our results suggest the existence of spoke-like modules as opposed to "deterministic model" of hierarchical modularity, and suggest the need to reconsider the organizational principle of biological hierarchy.

Dosimetry of internal emitting: principles and perspectives of the MIRD technology

International Nuclear Information System (INIS)

Ferro F, G.

1999-01-01

The development of the radiopharmaceutical technology have multiplied the number of radioisotopes with applications in therapeutical nuclear medicine so known as Directed radiotherapy. Assuming the radiation is capable to produce noxious effects in the biological systems, it is important to evaluate appropriately the risks and benefits of the administration of radioactive agents in the patient. The outstanding parameter in this evaluation is the absorbed dose, which is product of the radiation emitted by a radionuclide that is localized or distributed to the interior of the human body in study and whose its estimation helps to predict the efficacy of the treatment. The scheme generalized of MIRD, it was formulated from thirty years ago for evaluating the interior dosimetry at level of organs.The finality of this work is to show the basic principles of the MIRD methodology and its perspectives using innovator tools as the dosimetry for dynamic masses, in particular the personnel dosimetry for the organs of each patient, the dosimetry for the small structures inside the organs (sub organic dosimetry), the distributions of doses in three dimensions (S voxel), the dosimetry at cellular level and the quantitative acquisition of pharmaceutical data. (Author)

Dosimetry of fast neutrons

International Nuclear Information System (INIS)

Jahr, R.

1975-03-01

Following an explanation of the physical fundamentals of neutron dosimetry, the special needs in medicine and biology are gone into. It is shown that the dose equivalent used in radiation protection simplifies in an undue manner the complicated dependence of the biological effects. The reason for this is the fact that the RBE for heavy recoil nuclei, amongst others, depends on the energy and sort of particle, whereas it is approximately equal to one for electrons independent of the energy. It is thus necessary in the fields of biology and medicine to have additional information on energy spectra of the neutrons as well as of all charged secondary particles as a function of the position in the phantom. These are obtained partly by calculation and partly by special dosemeters. The accuracy achieved so far is 5%. (ORU/LH) [de

Exploitation of complex network topology for link prediction in biological interactomes

KAUST Repository

Alanis Lobato, Gregorio

2014-06-01

The network representation of the interactions between proteins and genes allows for a holistic perspective of the complex machinery underlying the living cell. However, the large number of interacting entities within the cell makes network construction a daunting and arduous task, prone to errors and missing information. Fortunately, the structure of biological networks is not different from that of other complex systems, such as social networks, the world-wide web or power grids, for which growth models have been proposed to better understand their structure and function. This means that we can design tools based on these models in order to exploit the topology of biological interactomes with the aim to construct more complete and reliable maps of the cell. In this work, we propose three novel and powerful approaches for the prediction of interactions in biological networks and conclude that it is possible to mine the topology of these complex system representations and produce reliable and biologically meaningful information that enriches the datasets to which we have access today.

Social traits, social networks and evolutionary biology.

Science.gov (United States)

Fisher, D N; McAdam, A G

2017-12-01

effects) provides the potential to understand how entire networks of social interactions in populations influence phenotypes and predict how these traits may evolve. By theoretical integration of social network analysis and quantitative genetics, we hope to identify areas of compatibility and incompatibility and to direct research efforts towards the most promising areas. Continuing this synthesis could provide important insights into the evolution of traits expressed in a social context and the evolutionary consequences of complex and nuanced social phenotypes. © 2017 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2017 European Society For Evolutionary Biology.

Integrating the DLD dosimetry system into the Almaraz NPP Corporative Database

International Nuclear Information System (INIS)

Gonzalez Crego, E.; Martin Lopez-Suevos, C.

1996-01-01

The article discusses the experience acquired during the integration of a new MGP Instruments DLD Dosimetry System into the Almaraz NPP corporative database and general communications network, following a client-server philosophy and taking into account the computer standards of the Plant. The most important results obtained are: Integration of DLD dosimetry information into corporative databases, permitting the use of new applications Sharing of existing personnel information with the DLD dosimetry application, thereby avoiding the redundant work of introducing data and improving the quality of the information. Facilitation of maintenance, both software and hardware, of the DLD system. Maximum explotation, from the computer point of view, of the initial investment. Adaptation of the application to the applicable legislation. (Author)

Spatiotemporal network motif reveals the biological traits of developmental gene regulatory networks in Drosophila melanogaster

Directory of Open Access Journals (Sweden)

Kim Man-Sun

2012-05-01

Full Text Available Abstract Background Network motifs provided a “conceptual tool” for understanding the functional principles of biological networks, but such motifs have primarily been used to consider static network structures. Static networks, however, cannot be used to reveal time- and region-specific traits of biological systems. To overcome this limitation, we proposed the concept of a “spatiotemporal network motif,” a spatiotemporal sequence of network motifs of sub-networks which are active only at specific time points and body parts. Results On the basis of this concept, we analyzed the developmental gene regulatory network of the Drosophila melanogaster embryo. We identified spatiotemporal network motifs and investigated their distribution pattern in time and space. As a result, we found how key developmental processes are temporally and spatially regulated by the gene network. In particular, we found that nested feedback loops appeared frequently throughout the entire developmental process. From mathematical simulations, we found that mutual inhibition in the nested feedback loops contributes to the formation of spatial expression patterns. Conclusions Taken together, the proposed concept and the simulations can be used to unravel the design principle of developmental gene regulatory networks.

PyPathway: Python Package for Biological Network Analysis and Visualization.

Science.gov (United States)

Xu, Yang; Luo, Xiao-Chun

2018-05-01

Life science studies represent one of the biggest generators of large data sets, mainly because of rapid sequencing technological advances. Biological networks including interactive networks and human curated pathways are essential to understand these high-throughput data sets. Biological network analysis offers a method to explore systematically not only the molecular complexity of a particular disease but also the molecular relationships among apparently distinct phenotypes. Currently, several packages for Python community have been developed, such as BioPython and Goatools. However, tools to perform comprehensive network analysis and visualization are still needed. Here, we have developed PyPathway, an extensible free and open source Python package for functional enrichment analysis, network modeling, and network visualization. The network process module supports various interaction network and pathway databases such as Reactome, WikiPathway, STRING, and BioGRID. The network analysis module implements overrepresentation analysis, gene set enrichment analysis, network-based enrichment, and de novo network modeling. Finally, the visualization and data publishing modules enable users to share their analysis by using an easy web application. For package availability, see the first Reference.

Analysis of MIR-18 results for physical and biological dosimetry: radiation shielding effectiveness in LEO

International Nuclear Information System (INIS)

Cucinotta, F.A.; Wilson, J.W.; Williams, J.R.; Dicello, J.F.

2000-01-01

We compare models of radiation transport and biological response to physical and biological dosimetry results from astronauts on the Mir space station. Transport models are shown to be in good agreement with physical measurements and indicate that the ratio of equivalent dose from the Galactic Cosmic Rays (GCR) to protons is about 3/2:1 and that this ratio will increase for exposures to internal organs. Two biological response models are used to compare to the Mir biodosimetry for chromosome aberration in lymphocyte cells; a track-structure model and the linear-quadratic model with linear energy transfer (LET) dependent weighting coefficients. These models are fit to in vitro data for aberration formation in human lymphocytes by photons and charged particles. Both models are found to be in reasonable agreement with data for aberrations in lymphocytes of Mir crew members: however there are differences between the use of LET dependent weighting factors and track structure models for assigning radiation quality factors. The major difference in the models is the increased effectiveness predicted by the track model for low charge and energy ions with LET near 10 keV/μm. The results of our calculations indicate that aluminum shielding, although providing important mitigation of the effects of trapped radiation, provides no protective effect from the galactic cosmic rays (GCR) in low-earth orbit (LEO) using either equivalent dose or the number of chromosome aberrations as a measure until about 100 g/cm 2 of material is used

Biological dosimetry of patients with differenced carcinoma of thyroid treated with Iodine-131; Dosimetria biologica de pacientes con carcinoma diferenciado de tiroides tratados con Iodo-131

Energy Technology Data Exchange (ETDEWEB)

Vallerga, M. B.; Rojo, A.M.; Taja, M.R.; Deluca, G.; Di Giorgio, M. [Autoridad Regulatoria Nuclear Av. Del Libertador 8250 (C1429BNP). Buenos Aires (Argentina); Fadel, A. [Hospital General de Agudos Dr. Carlos Durand Av. Diaz Velez 5044. Buenos Aires (Argentina); Cabrejas, M.; Valdivieso, C. [Hospital de Clfnicas Jose de San Martin Av. Cordoba 2351 (CP1120). Buenos Aires (Argentina)]. e-mail: mvallerg@cae.arn.gov.ar

2006-07-01

The administration of I-131 to patient with Differentiated Thyroid Carcinoma (CaDiT) it is used inside the therapeutic outline as later step to the thyroidectomy. However, the good activity to give is of difficult determination due to factors such as, the variability in the capacity of tumoral reception of the I-131, distribution of the pharmaceutical, physiologic status, other associate pathologies, grade of advance of the illness, and previous treatments. Additionally, the activity to administer is dependent of the dose of tolerance in the healthy tissues; superior dose to 2 Gy in bone marrow, its could drive to myelotoxicity. At the moment, the form more extended of administration it is the empiric prescription that considers clinical parameters and of laboratory for their determination. Presently work, the protocol of applied treatment incorporates the evaluation for internal dosimetry and biological dosimetry to estimate absorbed dose in bone marrow. The biological estimate of the dose of these patients is based on the quantification of chromosomal aberrations whose frequency is referred to a curve-dose response in which the lymphocytes is irradiated in vitro with I-131, allowing to determine the in vivo dose to the patient's circulating lymphocytes. The objective of the present work is to determine the applicability of different cytogenetic essays in the estimate of the absorbed dose to the whole body or specific organs. Three patients were evaluated with CaDiT. Their treatment protocol consisted on a tracer administration of radioactive iodine of 74 - 111 MBq (2 - 3 mCi) and a therapy 7,4 - 11,1 GBq (200 - 300 mCi). Previous to the tracer administration and 8 days post-therapeutic administration took samples of veined blood that were evaluated by biological dosimetry by means of the application of the techniques: conventional cytogenetic Micronucleus and FISH (Hybridization in situ by Fluorescence). Starting from the frequencies of observed chromosomal

Revisiting the variation of clustering coefficient of biological networks suggests new modular structure

Directory of Open Access Journals (Sweden)

Hao Dapeng

2012-05-01

Full Text Available Abstract Background A central idea in biology is the hierarchical organization of cellular processes. A commonly used method to identify the hierarchical modular organization of network relies on detecting a global signature known as variation of clustering coefficient (so-called modularity scaling. Although several studies have suggested other possible origins of this signature, it is still widely used nowadays to identify hierarchical modularity, especially in the analysis of biological networks. Therefore, a further and systematical investigation of this signature for different types of biological networks is necessary. Results We analyzed a variety of biological networks and found that the commonly used signature of hierarchical modularity is actually the reflection of spoke-like topology, suggesting a different view of network architecture. We proved that the existence of super-hubs is the origin that the clustering coefficient of a node follows a particular scaling law with degree k in metabolic networks. To study the modularity of biological networks, we systematically investigated the relationship between repulsion of hubs and variation of clustering coefficient. We provided direct evidences for repulsion between hubs being the underlying origin of the variation of clustering coefficient, and found that for biological networks having no anti-correlation between hubs, such as gene co-expression network, the clustering coefficient doesn’t show dependence of degree. Conclusions Here we have shown that the variation of clustering coefficient is neither sufficient nor exclusive for a network to be hierarchical. Our results suggest the existence of spoke-like modules as opposed to “deterministic model” of hierarchical modularity, and suggest the need to reconsider the organizational principle of biological hierarchy.

Neutron personnel dosimetry

International Nuclear Information System (INIS)

Griffith, R.V.

1981-01-01

The current state-of-the-art in neutron personnel dosimetry is reviewed. Topics covered include dosimetry needs and alternatives, current dosimetry approaches, personnel monitoring devices, calibration strategies, and future developments

The program of international intercomparison of accident dosimetry

International Nuclear Information System (INIS)

2002-06-01

The French institute of radioprotection and nuclear safety (IRSN) has carried out in June 2002 an international intercomparison program for the testing of the physical and biological accident dosimetry techniques. The intercomparison is jointly organized by the IRSN and the OECD-NEA with the sustain of the European commission and the collaboration of the CEA centre of Valduc (France). About 30 countries have participated to this program. Each country has supplied its own dosimeters and biological samples which have been irradiated using the Silene reactor of CEA-Valduc or a 60 Co source. These experiments allow to test the new dosimetric techniques that have been developed since the previous intercomparison program (1993) and to confirm or improve the performances of older techniques. Aside from the intercomparison exercise, this report makes a status of the known radiological accidents and of the effects of high doses of ionizing radiations on human health (symptoms, therapeutics). It explains the phenomenology of criticality accidents, the prevention means, and the history of such accidents up to the Tokai-Mura one in 1999. Finally, the dosimetry of criticality is presented with its physical and biological techniques. (J.S.)

Epigenetics and Why Biological Networks are More Controllable than Expected

Science.gov (United States)

Motter, Adilson

2013-03-01

A fundamental property of networks is that perturbations to one node can affect other nodes, potentially causing the entire system to change behavior or fail. In this talk, I will show that it is possible to exploit this same principle to control network behavior. This approach takes advantage of the nonlinear dynamics inherent to real networks, and allows bringing the system to a desired target state even when this state is not directly accessible or the linear counterpart is not controllable. Applications show that this framework permits both reprogramming a network to a desired task as well as rescuing networks from the brink of failure, which I will illustrate through various biological problems. I will also briefly review the progress our group has made over the past 5 years on related control of complex networks in non-biological domains.

Analysis and logical modeling of biological signaling transduction networks

Science.gov (United States)

Sun, Zhongyao

The study of network theory and its application span across a multitude of seemingly disparate fields of science and technology: computer science, biology, social science, linguistics, etc. It is the intrinsic similarities embedded in the entities and the way they interact with one another in these systems that link them together. In this dissertation, I present from both the aspect of theoretical analysis and the aspect of application three projects, which primarily focus on signal transduction networks in biology. In these projects, I assembled a network model through extensively perusing literature, performed model-based simulations and validation, analyzed network topology, and proposed a novel network measure. The application of network modeling to the system of stomatal opening in plants revealed a fundamental question about the process that has been left unanswered in decades. The novel measure of the redundancy of signal transduction networks with Boolean dynamics by calculating its maximum node-independent elementary signaling mode set accurately predicts the effect of single node knockout in such signaling processes. The three projects as an organic whole advance the understanding of a real system as well as the behavior of such network models, giving me an opportunity to take a glimpse at the dazzling facets of the immense world of network science.

Two classes of bipartite networks: nested biological and social systems.

Science.gov (United States)

Burgos, Enrique; Ceva, Horacio; Hernández, Laura; Perazzo, R P J; Devoto, Mariano; Medan, Diego

2008-10-01

Bipartite graphs have received some attention in the study of social networks and of biological mutualistic systems. A generalization of a previous model is presented, that evolves the topology of the graph in order to optimally account for a given contact preference rule between the two guilds of the network. As a result, social and biological graphs are classified as belonging to two clearly different classes. Projected graphs, linking the agents of only one guild, are obtained from the original bipartite graph. The corresponding evolution of its statistical properties is also studied. An example of a biological mutualistic network is analyzed in detail, and it is found that the model provides a very good fitting of all the main statistical features. The model also provides a proper qualitative description of the same features observed in social webs, suggesting the possible reasons underlying the difference in the organization of these two kinds of bipartite networks.

The status of the seventh report in the series Biological Effects of Ionizing Radiations and a revised dosimetry for the Radiation Effects Research Foundation's A-bomb studies

International Nuclear Information System (INIS)

Douple, Evan; Jostes, Rick

2002-01-01

Results of a National Academies workshop and feasibility study led US Governmental agencies to request the Board on Radiation Effects Research of the National Research Council to commence a risk assessment study in 1998 as the seventh report in the series Biological Effects of Ionizing Radiations (BEIR VII). Originally targeted for completion in the autumn of 2001, the study Potential Health Effects of Exposure to Low Dose, Low-LET Ionizing Radiation was extended until the autumn of 2003 at the request of the sponsors. Two factors contributing to this decision are discussed: a revised dosimetry to update DS86 for the Radiation Effects Research Foundation's A-bomb-survivor studies and the potential for new information to become available from low-dose studies that are under way. Epidemiological and biological data since BEIR V are being considered by a BEIR VII committee composed of 17 members. The committee's statement of task is reviewed along with the major recommendations of the recent National Research Council report on the status of DS86 - recommendations that are being implemented by US and Japan dosimetry working groups. (author)

Bayesian Network Webserver: a comprehensive tool for biological network modeling.

Science.gov (United States)

Ziebarth, Jesse D; Bhattacharya, Anindya; Cui, Yan

2013-11-01

The Bayesian Network Webserver (BNW) is a platform for comprehensive network modeling of systems genetics and other biological datasets. It allows users to quickly and seamlessly upload a dataset, learn the structure of the network model that best explains the data and use the model to understand relationships between network variables. Many datasets, including those used to create genetic network models, contain both discrete (e.g. genotype) and continuous (e.g. gene expression traits) variables, and BNW allows for modeling hybrid datasets. Users of BNW can incorporate prior knowledge during structure learning through an easy-to-use structural constraint interface. After structure learning, users are immediately presented with an interactive network model, which can be used to make testable hypotheses about network relationships. BNW, including a downloadable structure learning package, is available at http://compbio.uthsc.edu/BNW. (The BNW interface for adding structural constraints uses HTML5 features that are not supported by current version of Internet Explorer. We suggest using other browsers (e.g. Google Chrome or Mozilla Firefox) when accessing BNW). ycui2@uthsc.edu. Supplementary data are available at Bioinformatics online.

Neutron spectrometry and dosimetry with neural networks and Bonner spheres: a study to reduce the spheres number

International Nuclear Information System (INIS)

Espinoza G, J. G.; Martinez B, M. R.; Leon P, A. A.; Hernandez P, C. F.; Castaneda M, V. H.; Solis S, L. O.; Castaneda M, R.; Ortiz R, J. M.; Vega C, H. R.; Mendez, R.; Gallego, E.; De Sousa L, M. A.

2016-10-01

For neutron spectrometry and neutron dosimetry, the Bonner spheres spectrometric system has been the most widely used system, however, the number, size and weight of the spheres composing the system, as well as the need to use a reconstruction code and the long periods of time used to carry out the measurements are some of the disadvantages of this system. For the reconstruction of the spectra, different techniques such as artificial neural networks of reverse propagation have been used. The objective of this work was to reduce the number of Bonner spheres and to use counting speeds in a reverse propagation neural network, optimized by means of the robust design methodology, to reconstruct the neutron spectra. For the design of the neural network we used the neutron spectra of the IAEA and the response matrix of the Bonner spheres with "6LiI(Eu) detector. The performance of the network was compared; using 7 Bonner spheres against other cases where only 2 and one sphere are used. The network topologies were trained 36 times for each case keeping constant the objective error (1E(-3)), the training algorithm was trains cg and the robust design methodology to determine the best network architectures. With these, the best and worst results were compared. The results obtained using 7 spheres were similar to those with the 5-in sphere, however is still in an information analysis stage. (Author)

Biodosimetry versus physical dosimetry for emergency dose assessment following large-scale radiological exposures

International Nuclear Information System (INIS)

McKeever, S.W.S.; Sholom, S.

2016-01-01

Existing data on intercomparisons involving biodosimetry or physical dosimetry methods are analyzed and the results interpreted regarding their efficacy in triage in emergency dosimetry following mass casualty radiological events. The biodosimetry technique examined is dicentric chromosome aberrations (DCA). The physical dosimetry techniques include electron paramagnetic resonance (EPR) of biological material (teeth) and physical material (smartphone screen glass), and optically stimulated luminescence (OSL) of electronic components (surface mount resistors) from mobile phones. Issues relating to calibration and interpretation of the data are discussed. An important conclusion of the analysis is that more research is critically needed to interpret the efficacy of the various methods. Included in this needed research are intercomparisons of the various methods in controlled experiments and the need to harmonize protocols. - Highlights: • Utility of bio- and physical dosimetry methods for emergency dosimetry triage. • Analysis of intercomparison data for different bio- and physical dosimetry methods. • The percentage of false positives and false negatives for a simulated IND event. • More research, especially intercomparisons, is required to reduce uncertainties.

Nonlinear signaling on biological networks: The role of stochasticity and spectral clustering

Science.gov (United States)

Hernandez-Hernandez, Gonzalo; Myers, Jesse; Alvarez-Lacalle, Enrique; Shiferaw, Yohannes

2017-03-01

Signal transduction within biological cells is governed by networks of interacting proteins. Communication between these proteins is mediated by signaling molecules which bind to receptors and induce stochastic transitions between different conformational states. Signaling is typically a cooperative process which requires the occurrence of multiple binding events so that reaction rates have a nonlinear dependence on the amount of signaling molecule. It is this nonlinearity that endows biological signaling networks with robust switchlike properties which are critical to their biological function. In this study we investigate how the properties of these signaling systems depend on the network architecture. Our main result is that these nonlinear networks exhibit bistability where the network activity can switch between states that correspond to a low and high activity level. We show that this bistable regime emerges at a critical coupling strength that is determined by the spectral structure of the network. In particular, the set of nodes that correspond to large components of the leading eigenvector of the adjacency matrix determines the onset of bistability. Above this transition the eigenvectors of the adjacency matrix determine a hierarchy of clusters, defined by its spectral properties, which are activated sequentially with increasing network activity. We argue further that the onset of bistability occurs either continuously or discontinuously depending upon whether the leading eigenvector is localized or delocalized. Finally, we show that at low network coupling stochastic transitions to the active branch are also driven by the set of nodes that contribute more strongly to the leading eigenvector. However, at high coupling, transitions are insensitive to network structure since the network can be activated by stochastic transitions of a few nodes. Thus this work identifies important features of biological signaling networks that may underlie their biological

Biological dosimetry of ionizing radiation by chromosomal aberration analysis; Dosimetria biologica de las radiaciones ionizantes mediante el analisis de aberraciones cromosomicas

Energy Technology Data Exchange (ETDEWEB)

Gonzalez-Castano, S.; Silva, A.; Navlet, J.

1990-07-01

Biological dosimetry consists of estimating absorbed doses for people exposed to radiation by mean biological methods. Several indicators used are based in haematological, biochemical, and cytogenetic data, although nowadays without doubt, the cytogenetic method is considered to be the most reliable. In this case, the study ol chromosomal aberrations, normally dicentric chromosomes, in peripheral lymphocytes can be related to absorbed dose through an experimental calibration curve. An experimental dose-response curve, using dicentric chromosomes analysis, X-rays at 300 kVp, 114 rad/min and temperature 37 degree celsius has been produced. Experimental data is fitted to model Y ={alpha} + {beta}{sub 1}D + {beta}{sub 2}D 2 , where Y is the number of dicentrics per cell and D the dose. The curve is compared with those produced elsewhere. (Author) 14 refs.

Fast grid layout algorithm for biological networks with sweep calculation.

Science.gov (United States)

Kojima, Kaname; Nagasaki, Masao; Miyano, Satoru

2008-06-15

Properly drawn biological networks are of great help in the comprehension of their characteristics. The quality of the layouts for retrieved biological networks is critical for pathway databases. However, since it is unrealistic to manually draw biological networks for every retrieval, automatic drawing algorithms are essential. Grid layout algorithms handle various biological properties such as aligning vertices having the same attributes and complicated positional constraints according to their subcellular localizations; thus, they succeed in providing biologically comprehensible layouts. However, existing grid layout algorithms are not suitable for real-time drawing, which is one of requisites for applications to pathway databases, due to their high-computational cost. In addition, they do not consider edge directions and their resulting layouts lack traceability for biochemical reactions and gene regulations, which are the most important features in biological networks. We devise a new calculation method termed sweep calculation and reduce the time complexity of the current grid layout algorithms through its encoding and decoding processes. We conduct practical experiments by using 95 pathway models of various sizes from TRANSPATH and show that our new grid layout algorithm is much faster than existing grid layout algorithms. For the cost function, we introduce a new component that penalizes undesirable edge directions to avoid the lack of traceability in pathways due to the differences in direction between in-edges and out-edges of each vertex. Java implementations of our layout algorithms are available in Cell Illustrator. masao@ims.u-tokyo.ac.jp Supplementary data are available at Bioinformatics online.

GraphAlignment: Bayesian pairwise alignment of biological networks

Czech Academy of Sciences Publication Activity Database

Kolář, Michal; Meier, J.; Mustonen, V.; Lässig, M.; Berg, J.

2012-01-01

Roč. 6, November 21 (2012) ISSN 1752-0509 Grant - others:Deutsche Forschungsgemeinschaft(DE) SFB 680; Deutsche Forschungsgemeinschaft(DE) SFB-TR12; Deutsche Forschungsgemeinschaft(DE) BE 2478/2-1 Institutional research plan: CEZ:AV0Z50520514 Keywords : Graph alignment * Biological networks * Parameter estimation * Bioconductor Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.982, year: 2012

Cytogenetic techniques for biological indications and dosimetry of of radiation damages in humans

International Nuclear Information System (INIS)

Hadjidekova, V.

2003-01-01

The cytogenetic methods present a proved way for bio-monitoring and bio-dosimetry for persons, submitted to ionising radiation in occupational and emergency conditions. Their application complement and assist the evaluation of the physical dosimetry and takes in account the individual radiosensitivity of the organism. A comparative assessment is made of the cytogenetic markers for radiation damage of humans applied in Bulgaria. It is discussed the sensitivity of the methods and their development in the last years, as well as the basic concept for their application - the causal relationship between the frequency of the observation of cytogenetic markers in peripheral blood lymphocytes and the risk of oncological disease. The conventional analysis of dicentrics is recognised as a 'golden standard' for the quantitative assessment of the radiation damage. The long term persisting translocations reflect properly the cumulative dose burden from chronic exposure. The micronucleus test allows a quick screening of large groups of persons, working in ionising radiation environment. The combined application with centromeric DNA probe improves the sensitivity and presents a modern alternative of the bio-monitoring and bio-dosimetry. It is discussed the advantages of the different cytogenetic techniques and their optimised application for the assessment of the radiation impact on humans

Calibration of SSTR neutron dosimetry for TMI-2 applications

International Nuclear Information System (INIS)

Gold, R.; Ruddy, F.H.; Roberts, J.H.; Preston, C.C.; Ulseth, J.A.; McElroy, W.N.; Leitz, F.J.; Hayward, B.R.; Schmittroth, F.A.

1982-01-01

Application of neutron dosimetry for assessment of fuel distribution throughout the Three Mile Island-2 (TMI-2) reactor-core region and the primary-coolant system is advanced. Neutron dosimetry in the reactor cavity, i.e. the cavity between the pressure vessel and the biological shield, could provide data for the assessment of the core fuel distribution. A more immediate task entails locating and quantifying the amount of fuel debris in the ex-core primary coolant system; in the range of 1 to 1000 kg. Solid-state track-recorder (SSTR) neutron dosimetry is considered for such exploratory scoping experiments at TMI-2. The sensitivity of mica- 235 U (asymptotically thick) SSTR has been ascertained for such environments. It has been demonstrated that the SSTR method has adequate sensitivity to properly respond and detect fuel quantities of the order of 1 kg in the ex-core primary coolant system. 21 figures

Dosimetry in radiotherapy. V.1

International Nuclear Information System (INIS)

1988-01-01

A series of symposia on dosimetry in medicine and biology have been held by the IAEA in co-operation with WHO. The present symposium was the first one focusing on ''Dosimetry in Radiotherapy''. The papers presented reflected the different steps in the calibration chain such as the calibration standards established by the National Standards Laboratories and the conversion of the reading of calibrated instruments to the desired quantity, i.e. absorbed dose to water at a reference point in the user's beam at the radiotherapy clinic. The programme further examined the procedures necessary for optimization of the treatment of the patient, such as treatment planning methods, dose distribution studies, new techniques of dose measurement, improvements in the physical dose distributions/conformation therapy and special problems involved in total body treatments. Results of quality assurance in radiotherapy were presented from local hospitals as well as from national and international studies. Refs, figs and tabs

CytoCluster: A Cytoscape Plugin for Cluster Analysis and Visualization of Biological Networks.

Science.gov (United States)

Li, Min; Li, Dongyan; Tang, Yu; Wu, Fangxiang; Wang, Jianxin

2017-08-31

Nowadays, cluster analysis of biological networks has become one of the most important approaches to identifying functional modules as well as predicting protein complexes and network biomarkers. Furthermore, the visualization of clustering results is crucial to display the structure of biological networks. Here we present CytoCluster, a cytoscape plugin integrating six clustering algorithms, HC-PIN (Hierarchical Clustering algorithm in Protein Interaction Networks), OH-PIN (identifying Overlapping and Hierarchical modules in Protein Interaction Networks), IPCA (Identifying Protein Complex Algorithm), ClusterONE (Clustering with Overlapping Neighborhood Expansion), DCU (Detecting Complexes based on Uncertain graph model), IPC-MCE (Identifying Protein Complexes based on Maximal Complex Extension), and BinGO (the Biological networks Gene Ontology) function. Users can select different clustering algorithms according to their requirements. The main function of these six clustering algorithms is to detect protein complexes or functional modules. In addition, BinGO is used to determine which Gene Ontology (GO) categories are statistically overrepresented in a set of genes or a subgraph of a biological network. CytoCluster can be easily expanded, so that more clustering algorithms and functions can be added to this plugin. Since it was created in July 2013, CytoCluster has been downloaded more than 9700 times in the Cytoscape App store and has already been applied to the analysis of different biological networks. CytoCluster is available from http://apps.cytoscape.org/apps/cytocluster.

A method of dosimetry for synchrotron microbeam radiation therapy using radiochromic films and microdensitometry

International Nuclear Information System (INIS)

Crosbie, J. C.; Svalbe, I. D.; Lewis, R. A.

2007-01-01

Full text: Normal tissue displays an exceptional tolerance to high doses of radiation (hundreds of Gy) when delivered as a microplanar array of synchrotron-generated x-rays. Furthermore, MRT has been shown to cause significant tumour growth delay and in some case complete ablation. The biological effects of MRT on tissue are not fully understood. This is further complicated by difficulties in performing accurate dosimetry. The majority of dosimetry performed for MRT has been Monte Carlo simulations. The aim of this work was to utilise film dosimetry and microdensitometry to measure the peak-to-valley dose ratios (PVDRs) for synchrotron microbeam radiation therapy.

Polymer gel dosimetry

Energy Technology Data Exchange (ETDEWEB)

Baldock, C [Institute of Medical Physics, School of Physics, University of Sydney (Australia); De Deene, Y [Radiotherapy and Nuclear Medicine, Ghent University Hospital (Belgium); Doran, S [CRUK Clinical Magnetic Resonance Research Group, Institute of Cancer Research, Surrey (United Kingdom); Ibbott, G [Radiation Physics, UT M D Anderson Cancer Center, Houston, TX (United States); Jirasek, A [Department of Physics and Astronomy, University of Victoria, Victoria, BC (Canada); Lepage, M [Centre d' imagerie moleculaire de Sherbrooke, Departement de medecine nucleaire et de radiobiologie, Universite de Sherbrooke, Sherbrooke, QC (Canada); McAuley, K B [Department of Chemical Engineering, Queen' s University, Kingston, ON (Canada); Oldham, M [Department of Radiation Oncology, Duke University Medical Center, Durham, NC (United States); Schreiner, L J [Cancer Centre of South Eastern Ontario, Kingston, ON (Canada)], E-mail: c.baldock@physics.usyd.edu.au, E-mail: yves.dedeene@ugent.be

2010-03-07

Polymer gel dosimeters are fabricated from radiation sensitive chemicals which, upon irradiation, polymerize as a function of the absorbed radiation dose. These gel dosimeters, with the capacity to uniquely record the radiation dose distribution in three-dimensions (3D), have specific advantages when compared to one-dimensional dosimeters, such as ion chambers, and two-dimensional dosimeters, such as film. These advantages are particularly significant in dosimetry situations where steep dose gradients exist such as in intensity-modulated radiation therapy (IMRT) and stereotactic radiosurgery. Polymer gel dosimeters also have specific advantages for brachytherapy dosimetry. Potential dosimetry applications include those for low-energy x-rays, high-linear energy transfer (LET) and proton therapy, radionuclide and boron capture neutron therapy dosimetries. These 3D dosimeters are radiologically soft-tissue equivalent with properties that may be modified depending on the application. The 3D radiation dose distribution in polymer gel dosimeters may be imaged using magnetic resonance imaging (MRI), optical-computerized tomography (optical-CT), x-ray CT or ultrasound. The fundamental science underpinning polymer gel dosimetry is reviewed along with the various evaluation techniques. Clinical dosimetry applications of polymer gel dosimetry are also presented. (topical review)

Criticality accident dosimetry systems: an international intercomparison at the SILENE reactor in 2002.

Science.gov (United States)

Médioni, R; Asselineau, B; Verrey, B; Trompier, F; Itié, C; Texier, C; Muller, H; Pelcot, G; Clairand, I; Jacquet, X; Pochat, J L

2004-01-01

In criticality accident dosimetry and more generally for high dose measurements, special techniques are used to measure separately the gamma ray and neutron components of the dose. To improve these techniques and to check their dosimetry systems (physical and/or biological), a total of 60 laboratories from 29 countries (America, Europe, Asia) participated in an international intercomparaison, which took place in France from 9 to 21 June 2002, at the SILENE reactor in Valduc and at a pure gamma source in Fontenay-aux-Roses. This intercomparison was jointly organised by the IRSN and the CEA with the help of the NEA/OCDE and was partly supported by the European Communities. This paper describes the aim of this intercomparison, the techniques used by the participants and the two radiation sources and their characteristics. The experimental arrangements of the dosemeters for the irradiations in free air or on phantoms are given. Then the dosimetric quantities measured and reported by the participants are summarised, analysed and compared with the reference values. The present paper concerns only the physical dosimetry and essentially experiments performed on the SILENE facility. The results obtained with the biological dosimetry are published in two other papers of this issue.

Local and global control of ecological and biological networks

OpenAIRE

Alessandro Ferrarini

2014-01-01

Recently, I introduced a methodological framework so that ecological and biological networks can be controlled both from inside and outside by coupling network dynamics and evolutionary modelling. The endogenous control requires the network to be optimized at the beginning of its dynamics (by acting upon nodes, edges or both) so that it will then go inertially to the desired state. Instead, the exogenous control requires that exogenous controllers act upon the network at each time step. By th...

Biological dosimetry after criticality accidents. Intercomparison exercise in the Silene Reactor - France; Dosimetria biologica en accidentes de criticidad. Ejercicio de intercomparacion en el Reactor Silene - Francia

Energy Technology Data Exchange (ETDEWEB)

Di Giorgio, Marina; Vallerga, Maria B; Taja, Maria R [Autoridad Regulatoria Nuclear, Buenos Aires (Argentina); arn gov ar, E-mail: mdigiorg@cae

2004-07-01

The Institute of Radiation Protection and Nuclear Safety Institute (IRSN) organized an international biological dosimetry intercomparison, at the SILENE experimental reactor (Valduc, France), simulating different criticality scenarios: bare source 4 Gy, lead shield source 1 and 2 Gy and gamma pure {sup 60}Co source 2 Gy. Fifteen laboratories were involved in this exercise, including the Argentine Biological Dosimetry Laboratory. The purposes of the intercomparison were: 1) To compare the unstable chromosome aberration (UCA) frequency observed by the different laboratories; and 2) To compare the dose estimation for gamma rays and neutrons. The objects of the present work were: I) To compare the mean frequency of UCA observed by the Argentine laboratory with the mean frequency observed by the participant laboratories as a whole. II) To compare the dose estimates performed by the Argentine lab with those estimated by the other laboratories involved in the second stage of the intercomparison. Overall, the mean frequencies of UCA and the correspondent 95% confidence limits obtained by the Argentine lab were consistent with the results obtained by the laboratories as a whole. For the gamma pure scenario, smaller variations were observed among laboratories in terms of dose (CV=18,2%) than in terms of frequency (CV=30,1%). For the mixed field scenarios, only four laboratories, including the Argentine lab, estimated gamma and neutron components of the total dose and just two (Argentine lab and lab 12) were in agreement with the given physical doses. The 1 Gy experiment presented lesser variations both in terms of frequency and dose than the other two scenarios. For the 4 and 2 Gy experiments, variations in neutron dose were more significant than variations in gamma dose, related to the magnitude of the dose. The results suggest that intercomparison exercises jointly with the accreditation of biological dosimetry by cytogenetic service laboratories, in compliance with ISO

Challenges of analysing suspected over exposed subjects using biological dosimetry at Sri Ramachandra University

International Nuclear Information System (INIS)

Vijayalakshimi, J.; Venkatachalam, P.; Solomon, F.D. Paul

2016-01-01

Biological dosimetry based on the analysis of dicentric chromosomes has become a routine component of the radiological protection programmes and has a valuable role to contribute in suspected over exposed subjects who perform diagnostic and therapeutic procedures. The Department of Human Genetics, Sri Ramachandra University, Porur, Chennai, has been involved in the standardization of chromosomal aberration analysis as a biological dosimeter for investigating accidental ionising radiation exposure since 1998. Our laboratory has been accredited since 2007 by Atomic Energy Regulatory Board. The initial process was to establish the in vitro dose response curve for various type of low LET ionizing radiation. Since accreditation, a total of 61 subjects have been referred to Sri Ramachandra University from SRRC, Kalpakkam. Brief social/medical history and informed consent are being obtained prior to blood samplings. The dose estimates expressed in sievert (Sv) measured by Thermoluminescence badges was in the range of 0.05-2779.05 mSv. Chromosomal aberration assay was used for analysis which allows direct detection of aberration in peripheral blood lymphocytes. The test was performed as per the standard operating protocol on peripheral blood lymphocyte. Currently the dose response curve for the automated scoring process in under way and we hope to improve upon quality and turnaround time using the automation available. Future challenge would be to establish an in vitro dose response curve with automated scoring technique and developing inter-laboratory comparison of dose response generated using automation

Biological dosimetry intercomparison exercise: an evaluation of Triage and routine mode results by robust methods

International Nuclear Information System (INIS)

Di Giorgio, M.; Vallerga, M.B.; Radl, A.; Taja, M.R.; Barquinero, J.F.; Seoane, A.; De Luca, J.; Guerrero Carvajal, Y.C.; Stuck Oliveira, M.S.; Valdivia, P.; García Lima, O.; Lamadrid, A.; González Mesa, J.; Romero Aguilera, I.; Mandina Cardoso, T.; Arceo Maldonado, C.; Espinoza, M.E.; Martínez López, W.; Lloyd, D.C.; Méndez Acuña, L.; Di Tomaso, M.V.; Roy, L.; Lindholm, C.; Romm, H.; Güçlü, I.

2011-01-01

Well-defined protocols and quality management standards are indispensable for biological dosimetry laboratories. Participation in periodic proficiency testing by interlaboratory comparisons is also required. This harmonization is essential if a cooperative network is used to respond to a mass casualty event. Here we present an international intercomparison based on dicentric chromosome analysis for dose assessment performed in the framework of the IAEA Regional Latin American RLA/9/054 Project. The exercise involved 14 laboratories, 8 from Latin America and 6 from Europe. The performance of each laboratory and the reproducibility of the exercise were evaluated using robust methods described in ISO standards. The study was based on the analysis of slides from samples irradiated with 0.75 (DI) and 2.5 Gy (DII). Laboratories were required to score the frequency of dicentrics and convert them to estimated doses, using their own dose-effect curves, after the analysis of 50 or 100 cells (triage mode) and after conventional scoring of 500 cells or 100 dicentrics. In the conventional scoring, at both doses, all reported frequencies were considered as satisfactory, and two reported doses were considered as questionable. The analysis of the data dispersion among the dicentric frequencies and among doses indicated a better reproducibility for estimated doses (15.6% for DI and 8.8% for DII) than for frequencies (24.4% for DI and 11.4% for DII), expressed by the coefficient of variation. In the two triage modes, although robust analysis classified some reported frequencies or doses as unsatisfactory or questionable, all estimated doses were in agreement with the accepted error of ±0.5 Gy. However, at the DI dose and for 50 scored cells, 5 out of the 14 reported confidence intervals that included zero dose and could be interpreted as false negatives. This improved with 100 cells, where only one confidence interval included zero dose. At the DII dose, all estimations fell within

Neutron spectrometry and dosimetry with ANNs

International Nuclear Information System (INIS)

Vega C, H. R.; Hernandez D, V. M.; Gallego, E.; Lorente, A.

2009-10-01

Artificial neural networks technology has been applied to unfold the neutron spectra and to calculate the effective dose, the ambient equivalent dose, and the personal dose equivalent for 252 Cf and 241 AmBe neutron sources. A Bonner sphere spectrometry with a 6 LiI(Eu) scintillator was utilized to measure the count rates of the spheres that were utilized as input in two artificial neural networks, one for spectrometry and another for dosimetry. Spectra and the ambient dose equivalent were also obtained with BUNKIUT code and the UTA4 response matrix. With both procedures spectra and ambient dose equivalent agrees in less than 10%. (author)

Quantifying the connectivity of scale-free and biological networks

Energy Technology Data Exchange (ETDEWEB)

Shiner, J.S. E-mail: shiner@alumni.duke.edu; Davison, Matt E-mail: mdavison@uwo.ca

2004-07-01

Scale-free and biological networks follow a power law distribution p{sub k}{proportional_to}k{sup -{alpha}} for the probability that a node is connected to k other nodes; the corresponding ranges for {alpha} (biological: 1<{alpha}<2; scale-free: 2<{alpha}{<=}3) yield a diverging variance for the connectivity k and lack of predictability for the average connectivity. Predictability can be achieved with the Renyi, Tsallis and Landsberg-Vedral extended entropies and corresponding 'disorders' for correctly chosen values of the entropy index q. Escort distributions p{sub k}{proportional_to}k{sup -{alpha}}{sup q} with q>3/{alpha} also yield a nondiverging variance and predictability. It is argued that the Tsallis entropies may be the appropriate quantities for the study of scale-free and biological networks.

Development of a new software tool, based on ANN technology, in neutron spectrometry and dosimetry research

International Nuclear Information System (INIS)

Ortiz R, J.M.; Martinez B, M.R.; Vega C, H.R.

2007-01-01

Artificial Intelligence is a branch of study which enhances the capability of computers by giving them human-like intelligence. The brain architecture has been extensively studied and attempts have been made to emulate it as in the Artificial Neural Network technology. A large variety of neural network architectures have been developed and they have gained wide-spread popularity over the last few decades. Their application is considered as a substitute for many classical techniques that have been used for many years, as in the case of neutron spectrometry and dosimetry research areas. In previous works, a new approach called Robust Design of Artificial Neural network was applied to build an ANN topology capable to solve the neutron spectrometry and dosimetry problems within the Mat lab programming environment. In this work, the knowledge stored at Mat lab ANN's synaptic weights was extracted in order to develop for first time a customized software application based on ANN technology, which is proposed to be used in the neutron spectrometry and simultaneous dosimetry fields. (Author)

Development of a new software tool, based on ANN technology, in neutron spectrometry and dosimetry research

Energy Technology Data Exchange (ETDEWEB)

Ortiz R, J.M.; Martinez B, M.R.; Vega C, H.R. [Universidad Autonoma de Zacatecas, Av. Ramon Lopez Velarde 801, A.P. 336, 98000 Zacatecas (Mexico)

2007-07-01

Artificial Intelligence is a branch of study which enhances the capability of computers by giving them human-like intelligence. The brain architecture has been extensively studied and attempts have been made to emulate it as in the Artificial Neural Network technology. A large variety of neural network architectures have been developed and they have gained wide-spread popularity over the last few decades. Their application is considered as a substitute for many classical techniques that have been used for many years, as in the case of neutron spectrometry and dosimetry research areas. In previous works, a new approach called Robust Design of Artificial Neural network was applied to build an ANN topology capable to solve the neutron spectrometry and dosimetry problems within the Mat lab programming environment. In this work, the knowledge stored at Mat lab ANN's synaptic weights was extracted in order to develop for first time a customized software application based on ANN technology, which is proposed to be used in the neutron spectrometry and simultaneous dosimetry fields. (Author)

The program of international intercomparison of accident dosimetry; Le programme d'intercomparaison internationale de dosimetrie d'accident 10-12 juin 2002

Energy Technology Data Exchange (ETDEWEB)

NONE

2002-06-01

The French institute of radioprotection and nuclear safety (IRSN) has carried out in June 2002 an international intercomparison program for the testing of the physical and biological accident dosimetry techniques. The intercomparison is jointly organized by the IRSN and the OECD-NEA with the sustain of the European commission and the collaboration of the CEA centre of Valduc (France). About 30 countries have participated to this program. Each country has supplied its own dosimeters and biological samples which have been irradiated using the Silene reactor of CEA-Valduc or a {sup 60}Co source. These experiments allow to test the new dosimetric techniques that have been developed since the previous intercomparison program (1993) and to confirm or improve the performances of older techniques. Aside from the intercomparison exercise, this report makes a status of the known radiological accidents and of the effects of high doses of ionizing radiations on human health (symptoms, therapeutics). It explains the phenomenology of criticality accidents, the prevention means, and the history of such accidents up to the Tokai-Mura one in 1999. Finally, the dosimetry of criticality is presented with its physical and biological techniques. (J.S.)

Use of FISH-translocations analyses for retrospective biological dosimetry: How stable are stable chromosome aberrations?

International Nuclear Information System (INIS)

Darroudi, F.

2000-01-01

Chromosome aberrations, in particular dicentrics, in peripheral blood lymphocytes are used to estimate the absorbed dose immediately following a radiation accident. However, difficulties for dose estimation arise with old exposures, due to a decline of cells containing unstable dicentric aberrations. The fluorescence in situ hybridisation (FISH) technique employing chromosome specific DNA libraries to 'paint' individual human chromosomes has opened new perspectives for rapid and reliable detection of stable chromosome aberrations such as translocations. The inherent stability of translocations over cell generations has enabled them to be used as a biodosemeter. However, due to the limited life of circulating T-lymphocytes, a level of uncertainty exists on the long-term persistence of stable translocations. The objectives of the present work are to present the current state of knowledge on the stability of translocations detected by FISH. The following aspects have been considered; (1) experience so far of retrospective biological dosimetry in humans following accidental and occupational over-exposure, (2) animal studies using mice and monkeys, (3) the influence of subsequent cell divisions on the yield and persistence of translocations following in vitro irradiation of human lymphocytes, and (4) the needs for further work to standardise and validate the use of FISH as a biological dosemeter, and to investigate the influence of various parameters such as radiation quality, dose rate and the discrimination of sub-types of translocations on persistence. (author)

MIRD Commentary: Proposed Name for a Dosimetry Unit Applicable to Deterministic Biological Effects-The Barendsen (Bd)

International Nuclear Information System (INIS)

Sgouros, George; Howell, R. W.; Bolch, Wesley E.; Fisher, Darrell R.

2009-01-01

The fundamental physical quantity for relating all biologic effects to radiation exposure is the absorbed dose, the energy imparted per unit mass of tissue. Absorbed dose is expressed in units of joules per kilogram (J/kg) and is given the special name gray (Gy). Exposure to ionizing radiation may cause both deterministic and stochastic biologic effects. To account for the relative effect per unit absorbed dose that has been observed for different types of radiation, the International Commission on Radiological Protection (ICRP) has established radiation weighting factors for stochastic effects. The product of absorbed dose in Gy and the radiation weighting factor is defined as the equivalent dose. Equivalent dose values are designated by a special named unit, the sievert (Sv). Unlike the situation for stochastic effects, no well-defined formalism and associated special named quantities have been widely adopted for deterministic effects. The therapeutic application of radionuclides and, specifically, -particle emitters in nuclear medicine has brought to the forefront the need for a well-defined dosimetry formalism applicable to deterministic effects that is accompanied by corresponding special named quantities. This commentary reviews recent proposals related to this issue and concludes with a recommendation to establish a new named quantity

Experiences and performance of the Harshaw dosimetry system at two major processing centres

International Nuclear Information System (INIS)

Tawil, R.A.; Olhalber, T.; Rathbone, B.

1996-01-01

The installations, operating practice, dose algorithms and results and maintenance experience at two major dosimetry processing centres are described. System selection considerations and a comprehensive quality programme are described in the light of the publication of testing requirements by various dosimetry regulatory organisations. Reported information from Siemens Dosimetry Services comprises their selection of dosemeters and processing equipment including service history, a description of their dose computation algorithm, and detailed results of their testing against DOELAP standards. Battelle Pacific Northwest Laboratories (PNL) provides a description of their dosemeters and equipment with service history; in addition, a discussion of their new neural network approach to a dose computation algorithm and test results from that algorithm are presented. (Author)

Network biology concepts in complex disease comorbidities

DEFF Research Database (Denmark)

Hu, Jessica Xin; Thomas, Cecilia Engel; Brunak, Søren

2016-01-01

collected electronically, disease co-occurrences are starting to be quantitatively characterized. Linking network dynamics to the real-life, non-ideal patient in whom diseases co-occur and interact provides a valuable basis for generating hypotheses on molecular disease mechanisms, and provides knowledge......The co-occurrence of diseases can inform the underlying network biology of shared and multifunctional genes and pathways. In addition, comorbidities help to elucidate the effects of external exposures, such as diet, lifestyle and patient care. With worldwide health transaction data now often being...

Dissecting the Molecular Mechanisms of Neurodegenerative Diseases through Network Biology

Directory of Open Access Journals (Sweden)

Jose A. Santiago

2017-05-01

Full Text Available Neurodegenerative diseases are rarely caused by a mutation in a single gene but rather influenced by a combination of genetic, epigenetic and environmental factors. Emerging high-throughput technologies such as RNA sequencing have been instrumental in deciphering the molecular landscape of neurodegenerative diseases, however, the interpretation of such large amounts of data remains a challenge. Network biology has become a powerful platform to integrate multiple omics data to comprehensively explore the molecular networks in the context of health and disease. In this review article, we highlight recent advances in network biology approaches with an emphasis in brain-networks that have provided insights into the molecular mechanisms leading to the most prevalent neurodegenerative diseases including Alzheimer’s (AD, Parkinson’s (PD and Huntington’s diseases (HD. We discuss how integrative approaches using multi-omics data from different tissues have been valuable for identifying biomarkers and therapeutic targets. In addition, we discuss the challenges the field of network medicine faces toward the translation of network-based findings into clinically actionable tools for personalized medicine applications.

Thermoluminescence albedo-neutron dosimetry

International Nuclear Information System (INIS)

Strand, T.; Storruste, A.

1986-10-01

The report discusses neutron detection with respect to dosimetry and compares different thermoluminescent dosimetry materials for neutron dosimetry. Construction and calibration of a thermoluminescence albedo neutron dosemeter, developed by the authors, is described

Applications of gel dosimetry

International Nuclear Information System (INIS)

Ibbott, Geoffrey S

2004-01-01

Gel dosimetry has been examined as a clinical dosimeter since the 1950s. During the last two decades, however, a rapid increase in the number of investigators has been seen, and the body of knowledge regarding gel dosimetry has expanded considerably. Gel dosimetry is still considered a research project, and the introduction of this tool into clinical use is proceeding slowly. This paper will review the characteristics of gel dosimetry that make it desirable for clinical use, the postulated and demonstrated applications of gel dosimetry, and some complications, set-backs, and failures that have contributed to the slow introduction into routine clinical use

Automated personal dosimetry monitoring system for NPP

International Nuclear Information System (INIS)

Chanyshev, E.; Chechyotkin, N.; Kondratev, A.; Plyshevskaya, D.

2006-01-01

personal dosimeters (albedo dosimeters). Operational and emergency monitoring of external radiation exposure: - Gamma radiation dose and dose rate measurement using direct reading personal dosimeters. - Gamma radiation dose measurement using radio-photoluminescent personal dosimeters. Monitoring of internal radiation exposure: - Measurement of activity of incorporated radionuclides using whole body counters. Hardware of A.P.D.M.S. represents a complex of automated workplaces based on industrial computers and measuring equipment; all workplaces are connected to one local computational network. Client software installed on automated workplaces processes the results of dosimetry monitoring (spectrum processing, computation of personal dose, report generation, etc.) and provides data exchange with data base of A.P.D.M.S. in the remote server. Communication with A.P.D.M.S. server is organized via the local computational network Ethernet. (authors)

Dosimetry at the Los Alamos Critical Experiments Facility: Past, present, and future

International Nuclear Information System (INIS)

Malenfant, R.E.

1993-10-01

Although the primary reason for the existence of the Los Alamos Critical Experiments Facility is to provide basic data on the physics of systems of fissile material, the physical arrangements and ability to provide sources of radiation have led to applications for all types of radiation dosimetry. In the broad definition of radiation phenomena, the facility has provided sources to evaluate biological effects, radiation shielding and transport, and measurements of basic parameters such as the evaluation of delayed neutron parameters. Within the last 15 years, many of the radiation measurements have been directed to calibration and intercomparison of dosimetry related to nuclear criticality safety. Future plans include (1) the new applications of Godiva IV, a bare-metal pulse assembly, for dosimetry (including an evaluation of neutron and gamma-ray room return); (2) a proposal to relocate the Health Physics Research Reactor from the Oak Ridge National Laboratory to Los Alamos, which will provide the opportunity to continue the application of a primary benchmark source to radiation dosimetry; and (3) a proposal to employ SHEBA, a low-enrichment solution assembly, for accident dosimetry and evaluation

Neural network models: from biology to many - body phenomenology

International Nuclear Information System (INIS)

Clark, J.W.

1993-01-01

Theoretical work in neural networks has a strange feel for most physicists. In some cases the aspect of design becomes paramount. More comfortable ground at least for many body theorists may be found in realistic biological simulation, although the complexity of most problems is so awesome that incisive results will be hard won. It has also shown the impressive capabilities of artificial networks in pattern recognition and classification may be exploited to solve management problems in experimental physics and for discovery of radically new theoretical description of physical systems. This advance represents an important step towards the ultimate goal of neuro biological paradigm. (A.B.)

Radiation dosimetry in radiotherapy with internal emitters

International Nuclear Information System (INIS)

Stabin, Michael G.

1997-01-01

Full text. Radiation dosimetry radionuclides are currently being labeled to various biological agents used in internal emitter radiotherapy. This talk will review the various technologies and types of radiolabel in current use, with focus on the characterization of the radiation dose to the various important tissues of the body. Methods for obtaining data, developing kinetic models, and calculating radiation doses will be reviewed. Monoclonal antibodies are currently being labeled with both alpha and beta emitting radionuclides in attempts to find effective agents against cancer. Several radionuclides are also being used as bone pain palliation agents. These agents must be studied in clinical trials to determine the biokinetics and radiation dosimetry prior to approval for general use. In such studies, it is important to ensure the collection of the appropriate kinds of data and to collect the data at appropriate time intervals. The uptake and retention of activity in all significant source organs and in excreta be measured periodically (with at least 2 data points phase of uptake or clearance). Then, correct dosimetry methods must be applied - the best available methods for characterizing the radionuclide kinetic and for estimating the dosimetry in the various organs of the body especially the marrow, should be used. Attempts are also under way to develop methods for estimating true patient-specific dosimetry. Cellular and animal studies are also. Valuable in evaluating the efficacy of the agents in shrinking or eliminating tumors; some results from such studies will also be discussed. The estimation of radiation doses to patients in therapy with internal emitters involves several complex phases of analysis. Careful attention to detail and the use of the best available methods are essential to the protection of the patient and a successful outcome

KeyPathwayMiner - De-novo network enrichment by combining multiple OMICS data and biological networks

DEFF Research Database (Denmark)

Baumbach, Jan; Alcaraz, Nicolas; Pauling, Josch K.

We tackle the problem of de-novo pathway extraction. Given a biological network and a set of case-control studies, KeyPathwayMiner efficiently extracts and visualizes all maximal connected sub-networks that contain mainly genes that are dysregulated, e.g., differentially expressed, in most cases ...

Chinese Herbal Medicine Meets Biological Networks of Complex Diseases: A Computational Perspective

Directory of Open Access Journals (Sweden)

Shuo Gu

2017-01-01

Full Text Available With the rapid development of cheminformatics, computational biology, and systems biology, great progress has been made recently in the computational research of Chinese herbal medicine with in-depth understanding towards pharmacognosy. This paper summarized these studies in the aspects of computational methods, traditional Chinese medicine (TCM compound databases, and TCM network pharmacology. Furthermore, we chose arachidonic acid metabolic network as a case study to demonstrate the regulatory function of herbal medicine in the treatment of inflammation at network level. Finally, a computational workflow for the network-based TCM study, derived from our previous successful applications, was proposed.

Chinese Herbal Medicine Meets Biological Networks of Complex Diseases: A Computational Perspective.

Science.gov (United States)

Gu, Shuo; Pei, Jianfeng

2017-01-01

With the rapid development of cheminformatics, computational biology, and systems biology, great progress has been made recently in the computational research of Chinese herbal medicine with in-depth understanding towards pharmacognosy. This paper summarized these studies in the aspects of computational methods, traditional Chinese medicine (TCM) compound databases, and TCM network pharmacology. Furthermore, we chose arachidonic acid metabolic network as a case study to demonstrate the regulatory function of herbal medicine in the treatment of inflammation at network level. Finally, a computational workflow for the network-based TCM study, derived from our previous successful applications, was proposed.

Multilayer network modeling creates opportunities for novel network statistics. Comment on "Network science of biological systems at different scales: A review" by Gosak et al.

Science.gov (United States)

Muldoon, Sarah Feldt

2018-03-01

As described in the review by Gosak et al., the field of network science has had enormous success in providing new insights into the structure and function of biological systems [1]. In the complex networks framework, system elements are network nodes, and connections between nodes represent some form of interaction between system elements [2]. The flexibility to define network nodes and edges to represent different aspects of biological systems has been employed to model numerous diverse systems at multiple scales.

Continuum Modeling of Biological Network Formation

KAUST Repository

Albi, Giacomo

2017-04-10

We present an overview of recent analytical and numerical results for the elliptic–parabolic system of partial differential equations proposed by Hu and Cai, which models the formation of biological transportation networks. The model describes the pressure field using a Darcy type equation and the dynamics of the conductance network under pressure force effects. Randomness in the material structure is represented by a linear diffusion term and conductance relaxation by an algebraic decay term. We first introduce micro- and mesoscopic models and show how they are connected to the macroscopic PDE system. Then, we provide an overview of analytical results for the PDE model, focusing mainly on the existence of weak and mild solutions and analysis of the steady states. The analytical part is complemented by extensive numerical simulations. We propose a discretization based on finite elements and study the qualitative properties of network structures for various parameter values.

Perturbation Biology: Inferring Signaling Networks in Cellular Systems

Science.gov (United States)

Miller, Martin L.; Gauthier, Nicholas P.; Jing, Xiaohong; Kaushik, Poorvi; He, Qin; Mills, Gordon; Solit, David B.; Pratilas, Christine A.; Weigt, Martin; Braunstein, Alfredo; Pagnani, Andrea; Zecchina, Riccardo; Sander, Chris

2013-01-01

We present a powerful experimental-computational technology for inferring network models that predict the response of cells to perturbations, and that may be useful in the design of combinatorial therapy against cancer. The experiments are systematic series of perturbations of cancer cell lines by targeted drugs, singly or in combination. The response to perturbation is quantified in terms of relative changes in the measured levels of proteins, phospho-proteins and cellular phenotypes such as viability. Computational network models are derived de novo, i.e., without prior knowledge of signaling pathways, and are based on simple non-linear differential equations. The prohibitively large solution space of all possible network models is explored efficiently using a probabilistic algorithm, Belief Propagation (BP), which is three orders of magnitude faster than standard Monte Carlo methods. Explicit executable models are derived for a set of perturbation experiments in SKMEL-133 melanoma cell lines, which are resistant to the therapeutically important inhibitor of RAF kinase. The resulting network models reproduce and extend known pathway biology. They empower potential discoveries of new molecular interactions and predict efficacious novel drug perturbations, such as the inhibition of PLK1, which is verified experimentally. This technology is suitable for application to larger systems in diverse areas of molecular biology. PMID:24367245

MO-B-BRB-04: 3D Dosimetry in End-To-End Dosimetry QA

Energy Technology Data Exchange (ETDEWEB)

Ibbott, G. [UT MD Anderson Cancer Center (United States)

2016-06-15

Full three-dimensional (3D) dosimetry using volumetric chemical dosimeters probed by 3D imaging systems has long been a promising technique for the radiation therapy clinic, since it provides a unique methodology for dose measurements in the volume irradiated using complex conformal delivery techniques such as IMRT and VMAT. To date true 3D dosimetry is still not widely practiced in the community; it has been confined to centres of specialized expertise especially for quality assurance or commissioning roles where other dosimetry techniques are difficult to implement. The potential for improved clinical applicability has been advanced considerably in the last decade by the development of improved 3D dosimeters (e.g., radiochromic plastics, radiochromic gel dosimeters and normoxic polymer gel systems) and by improved readout protocols using optical computed tomography or magnetic resonance imaging. In this session, established users of some current 3D chemical dosimeters will briefly review the current status of 3D dosimetry, describe several dosimeters and their appropriate imaging for dose readout, present workflow procedures required for good dosimetry, and analyze some limitations for applications in select settings. We will review the application of 3D dosimetry to various clinical situations describing how 3D approaches can complement other dose delivery validation approaches already available in the clinic. The applications presented will be selected to inform attendees of the unique features provided by full 3D techniques. Learning Objectives: L. John Schreiner: Background and Motivation Understand recent developments enabling clinically practical 3D dosimetry, Appreciate 3D dosimetry workflow and dosimetry procedures, and Observe select examples from the clinic. Sofie Ceberg: Application to dynamic radiotherapy Observe full dosimetry under dynamic radiotherapy during respiratory motion, and Understand how the measurement of high resolution dose data in an

From biological neural networks to thinking machines: Transitioning biological organizational principles to computer technology

Science.gov (United States)

Ross, Muriel D.

1991-01-01

The three-dimensional organization of the vestibular macula is under study by computer assisted reconstruction and simulation methods as a model for more complex neural systems. One goal of this research is to transition knowledge of biological neural network architecture and functioning to computer technology, to contribute to the development of thinking computers. Maculas are organized as weighted neural networks for parallel distributed processing of information. The network is characterized by non-linearity of its terminal/receptive fields. Wiring appears to develop through constrained randomness. A further property is the presence of two main circuits, highly channeled and distributed modifying, that are connected through feedforward-feedback collaterals and biasing subcircuit. Computer simulations demonstrate that differences in geometry of the feedback (afferent) collaterals affects the timing and the magnitude of voltage changes delivered to the spike initiation zone. Feedforward (efferent) collaterals act as voltage followers and likely inhibit neurons of the distributed modifying circuit. These results illustrate the importance of feedforward-feedback loops, of timing, and of inhibition in refining neural network output. They also suggest that it is the distributed modifying network that is most involved in adaptation, memory, and learning. Tests of macular adaptation, through hyper- and microgravitational studies, support this hypothesis since synapses in the distributed modifying circuit, but not the channeled circuit, are altered. Transitioning knowledge of biological systems to computer technology, however, remains problematical.

Fast neutron dosimetry: Progress summary

International Nuclear Information System (INIS)

DeLuca, P.M. Jr.

1988-01-01

The purpose was to investigate the radiological physics and biology of very low energy photons derived from a 1-GeV electron synchrotron storage ring. An extensive beam line and irradiation apparatus was designed, developed, and constructed. Dosimetry measurements required invention and testing of a miniature absolute calorimeter and a cell irradiation fixture suitable for scanning exposures under computer control. Measurements of the kerma factors of oxygen, aluminum and silicon for 14-20 MeV neutrons. Custom designed miniature proportional counters of cylindrical symmetry were employed in these determinations. The oxygen kerma factor was found significantly lower than values calculated from microscopic cross sections. We also tested Mg and Fe walled conventional spherical counters. The direct neutron-counting gas interaction is significant enough for these counters that a correction is needed. We also investigated the application of Nuclear Magnetic Resonance spectroscopy to radiation dosimetry. Our purpose was to take advantage of recent development of very high-field magnets, complex RF-pulse techniques for solvent suppression, and improved spectral analysis techniques

Training of reverse propagation neural networks applied to neutron dosimetry; Entrenamiento de redes neuronales de propagacion inversa aplicadas a la dosimetria de neutrones

Energy Technology Data Exchange (ETDEWEB)

Hernandez P, C. F.; Martinez B, M. R.; Leon P, A. A.; Espinoza G, J. G.; Castaneda M, V. H.; Solis S, L. O.; Castaneda M, R.; Ortiz R, M.; Vega C, H. R. [Universidad Autonoma de Zacatecas, Av. Ramon Lopez Velarde 801, Col. Centro, 98000 Zacatecas, Zac. (Mexico); Mendez V, R. [Centro de Investigaciones Energeticas, Medioambientales y Tecnologicas, Laboratorio de Patrones Neutronicos, Av. Complutense 22, 28040 Madrid (Spain); Gallego, E. [Universidad Politecnica de Madrid, Departamento de Ingenieria Nuclear, ETSI Industriales, Jose Gutierrez Abascal 2, 28006 Madrid (Spain); De Sousa L, M. A. [Centro de Desenvolvimento da Tecnologia Nuclear / CNEN, Av. Pte. Antonio Carlos 6627, 31270-901 Pampulha, Belo Horizonte, Minas Gerais (Brazil)

2016-10-15

Neutron dosimetry is of great importance in radiation protection as aims to provide dosimetric quantities to assess the magnitude of detrimental health effects due to exposure of neutron radiation. To quantify detriment to health is necessary to evaluate the dose received by the occupationally exposed personnel using different detection systems called dosimeters, which have very dependent responses to the energy distribution of neutrons. The neutron detection is a much more complex problem than the detection of charged particles, since it does not carry an electric charge, does not cause direct ionization and has a greater penetration power giving the possibility of interacting with matter in a different way. Because of this, various neutron detection systems have been developed, among which the Bonner spheres spectrometric system stands out due to the advantages that possesses, such as a wide range of energy, high sensitivity and easy operation. However, once obtained the counting rates, the problem lies in the neutron spectrum deconvolution, necessary for the calculation of the doses, using different mathematical methods such as Monte Carlo, maximum entropy, iterative methods among others, which present various difficulties that have motivated the development of new technologies. Nowadays, methods based on artificial intelligence technologies are being used to perform neutron dosimetry, mainly using the theory of artificial neural networks. In these new methods the need for spectrum reconstruction can be eliminated for the calculation of the doses. In this work an artificial neural network or reverse propagation was trained for the calculation of 15 equivalent doses from the counting rates of the Bonner spheres spectrometric system using a set of 7 spheres, one of 2 spheres and two of a single sphere of different sizes, testing different error values until finding the most appropriate. The optimum network topology was obtained through the robust design

Biological effects of radiation and dosimetry in X-ray diagnostics of children

International Nuclear Information System (INIS)

Milkovic, Durdica; Beck, Natko; Kovac, Kornelija; Garaj-Vrhovac, Vera; Gajski, Goran

2008-01-01

The chest radiograms represent the basic radiological examinations of thorax. The basis for radiation protection especially in pediatrics is the exact determination of doses. The risk estimation of genome damages can be received in human peripheral blood lymphocytes using alkaline version of Comet Assay. The aim of this work was assessment and quantification of the level of DNA damage in peripheral blood lymphocytes of children during airways X-ray examinations of chest and to compare data to the dose of exposure. Doses were determined using thermoluminescence (TL) dosimetry and radiophotoluminescent (RPL) glass dosimetry system. Twenty children with pulmonary diseases, ages between 5 and 14 years were assessed. Dose measurements were conducted for poster-anterior (PA) projection on the forehead, thyroid gland, gonads, chest and back. We used a 150 kV Shimadzu CH-200 M X-ray unit. Peripheral blood samples were taken from children after and prior to X-ray exposure and were examined with the alkaline Comet Assay. Comet Assay is one of the standard techniques for assessing genome damage with variety applications in genotoxicity testing as well as fundamental research in DNA damage and repair. As a measure of DNA damage tail length was used, calculated from the centre of the head and presented in micrometers (μm). Mean value of group after irradiation was 14.04 ± 1.74 as opposed to mean value of group before irradiation that was 13.15 ± 1.33. Differences between mean tail lengths were statistically significant (P<0.05, ANOVA). In addition, correlation was found between doses in primary beam (measured on the back) and the ratio of tail length (DNA damage) before and after irradiation. Doses measured with TL and RPL dosimeters showed satisfactory agreement and both dosimetry methods are suitable for dosimetric measurements in X-ray diagnostics. (author)

Dosimetry Service

CERN Multimedia

2005-01-01

Please remember to read your dosimeter at least once a month. Regular read-outs are vital to ensure that your personal dose is periodically monitored. Dosimeters should be read even if you have not visited the controlled areas. Dosimetry Service - Tel. 72155 http://cern.ch/rp-dosimetry

Thermoluminescence in medical dosimetry

International Nuclear Information System (INIS)

Rivera, T.

2011-10-01

The dosimetry by thermoluminescence (Tl) is applied in the entire world for the dosimetry of ionizing radiations specially to personal and medical dosimetry. This dosimetry method has been very interesting for measures in vivo because the Tl dosimeters have the advantage of being very sensitive in a very small volume and they are also equivalent to tissue and they do not need additional accessories (for example, cable, electrometer, etc.) The main characteristics of the diverse Tl materials to be used in the radiation measures and practical applications are: the Tl curve, the share homogeneity, the signal stability after the irradiation, precision and exactitude, the response in function with the dose and the energy influence. In this work a brief summary of the advances of the radiations dosimetry is presented by means of the thermally stimulated luminescence and its application to the dosimetry in radiotherapy. (Author)

Quantitative assessment of biological impact using transcriptomic data and mechanistic network models

International Nuclear Information System (INIS)

Thomson, Ty M.; Sewer, Alain; Martin, Florian; Belcastro, Vincenzo; Frushour, Brian P.; Gebel, Stephan; Park, Jennifer; Schlage, Walter K.; Talikka, Marja; Vasilyev, Dmitry M.; Westra, Jurjen W.; Hoeng, Julia; Peitsch, Manuel C.

2013-01-01

Exposure to biologically active substances such as therapeutic drugs or environmental toxicants can impact biological systems at various levels, affecting individual molecules, signaling pathways, and overall cellular processes. The ability to derive mechanistic insights from the resulting system responses requires the integration of experimental measures with a priori knowledge about the system and the interacting molecules therein. We developed a novel systems biology-based methodology that leverages mechanistic network models and transcriptomic data to quantitatively assess the biological impact of exposures to active substances. Hierarchically organized network models were first constructed to provide a coherent framework for investigating the impact of exposures at the molecular, pathway and process levels. We then validated our methodology using novel and previously published experiments. For both in vitro systems with simple exposure and in vivo systems with complex exposures, our methodology was able to recapitulate known biological responses matching expected or measured phenotypes. In addition, the quantitative results were in agreement with experimental endpoint data for many of the mechanistic effects that were assessed, providing further objective confirmation of the approach. We conclude that our methodology evaluates the biological impact of exposures in an objective, systematic, and quantifiable manner, enabling the computation of a systems-wide and pan-mechanistic biological impact measure for a given active substance or mixture. Our results suggest that various fields of human disease research, from drug development to consumer product testing and environmental impact analysis, could benefit from using this methodology. - Highlights: • The impact of biologically active substances is quantified at multiple levels. • The systems-level impact integrates the perturbations of individual networks. • The networks capture the relationships between

Biological Effects of Ionizing Radiation

Science.gov (United States)

Ingram, M.; Mason, W. B.; Whipple, G. H.; Howland, J. W.

1952-04-07

This report presents a review of present knowledge and concepts of the biological effects of ionizing radiations. Among the topics discussed are the physical and chemical effects of ionizing radiation on biological systems, morphological and physiological changes observed in biological systems subjected to ionizing radiations, physiological changes in the intact animal, latent changes following exposure of biological systems to ionizing radiations, factors influencing the biological response to ionizing radiation, relative effects of various ionizing radiations, and biological dosimetry.

New ways for the coordination of research for the dosimetry of ionizing radiation

International Nuclear Information System (INIS)

Schuhmacher, Helmut

2009-01-01

The European Radiation Dosimetry Group (EURADOS) is a network of about 50 institutions from nearly oil European countries which coordinates research and development for the dosimetry of ionizing radiation. EURADOS was supported over many years by the European Communities. Since 2008 EURADOS is registered as a non-profit society (eingetragener Verein, e.V.) in Braunschweig with the office at the Physikalisch-Technische Bundesanstalt (PTB). This new formal status and the related independence from European research programmes allows new ways in the coordination of research. (orig.)

JENDL Dosimetry File

International Nuclear Information System (INIS)

Nakazawa, Masaharu; Iguchi, Tetsuo; Kobayashi, Katsuhei; Iwasaki, Shin; Sakurai, Kiyoshi; Ikeda, Yujiro; Nakagawa, Tsuneo.

1992-03-01

The JENDL Dosimetry File based on JENDL-3 was compiled and integral tests of cross section data were performed by the Dosimetry Integral Test Working Group of the Japanese Nuclear Data Committee. Data stored in the JENDL Dosimetry File are the cross sections and their covariance data for 61 reactions. The cross sections were mainly taken from JENDL-3 and the covariances from IRDF-85. For some reactions, data were adopted from other evaluated data files. The data are given in the neutron energy region below 20 MeV in both of point-wise and group-wise files in the ENDF-5 format. In order to confirm reliability of the data, several integral tests were carried out; comparison with the data in IRDF-85 and average cross sections measured in fission neutron fields, fast reactor spectra, DT neutron fields and Li(d, n) neutron fields. As a result, it has been found that the JENDL Dosimetry File gives better results than IRDF-85 but there are some problems to be improved in future. The contents of the JENDL Dosimetry File and the results of the integral tests are described in this report. All of the dosimetry cross sections are shown in a graphical form. (author) 76 refs

JENDL Dosimetry File

Energy Technology Data Exchange (ETDEWEB)

Nakazawa, Masaharu; Iguchi, Tetsuo [Tokyo Univ. (Japan). Faculty of Engineering; Kobayashi, Katsuhei [Kyoto Univ., Kumatori, Osaka (Japan). Research Reactor Inst.; Iwasaki, Shin [Tohoku Univ., Sendai (Japan). Faculty of Engineering; Sakurai, Kiyoshi; Ikeda, Yujior; Nakagawa, Tsuneo [Japan Atomic Energy Research Inst., Tokai, Ibaraki (Japan). Tokai Research Establishment

1992-03-15

The JENDL Dosimetry File based on JENDL-3 was compiled and integral tests of cross section data were performed by the Dosimetry Integral Test Working Group of the Japanese Nuclear Data Committee. Data stored in the JENDL Dosimetry File are the cross sections and their covariance data for 61 reactions. The cross sections were mainly taken from JENDL-3 and the covariances from IRDF-85. For some reactions, data were adopted from other evaluated data files. The data are given in the neutron energy region below 20 MeV in both of point-wise and group-wise files in the ENDF-5 format. In order to confirm reliability of the data, several integral tests were carried out; comparison with the data in IRDF-85 and average cross sections measured in fission neutron fields, fast reactor spectra, DT neutron fields and Li(d,n) neutron fields. As a result, it has been found that the JENDL Dosimetry File gives better results than IRDF-85 but there are some problems to be improved in future. The contents of the JENDL Dosimetry File and the results of the integral tests are described in this report. All of the dosimetry cross sections are shown in a graphical form.

Dosimetry Service

CERN Multimedia

2005-01-01

Please remember to read your dosimeter at least once a month. Regular read-outs are vital to ensure that your personal dose is periodically monitored. Dosimeters should be read even if you have not visited the controlled areas. Dosimetry Service - Tel. 7 2155 http://cern.ch/rp-dosimetry

Dosimetry Service

CERN Multimedia

Dosimetry Service

2005-01-01

Please remember to read your dosimeter at least once a month. Regular read-outs are vital to ensure that your personal dose is periodically monitored. Dosimeters should be read even if you have not visited the controlled areas. Dosimetry Service Tel. 7 2155 http://cern.ch/rp-dosimetry

Light scattering by irradiated cells as a method of biological dosimetry

International Nuclear Information System (INIS)

Ostashevsky, J.

1984-01-01

Light scattering (LS) parameters between 350-500 nm wavelength have been studied for 2 groups of cells: 1) blood (BL) and thymus (TL) lymphocytes of rats and mice, and 2) Ehrlich ascite tumor (EAT) cells. LS measurements of freshly prepared cell suspensions have been made 24 hrs after x-ray irradiation of rodents (250 Kev, HVL = 2 mm Cu) at doses of 50-900 cGy. A steep (30% per Gy) linear (50-800 cGy for TL and 50-400 cGy for BL) dose-dependence was obtained for the increase in 90 0 -angle LS intensity. Increase in absorption (low-angle LS) was also linear (50-800 cGy for TL and BL) but less steep (9% per Gy). Irradiated cells were the same size as unirradiated. Changes in LS for TL and BL appear to follow the appearance of additional vacuoles which may become new internal smaller-size centers of LS. This suggestion is supported by direct observations of cells with dark-field microscopy. For EAT cells, both 90 0 and low angle LS had the same slope. This slope (4% per Gy) is much shallower than that for BL and TL, and quantitatively coincides with enlargement of area of EAT cells, which could explain LS changes. The difference in LS behavior of the two cellular groups reflects a difference in their early response to irradiation: interphase death for TL and BL, vs division delay for EAT cells. The above data suggest the fast and simple method of biological dosimetry

Dosimetry for radiation processing

DEFF Research Database (Denmark)

Miller, Arne

1986-01-01

During the past few years significant advances have taken place in the different areas of dosimetry for radiation processing, mainly stimulated by the increased interest in radiation for food preservation, plastic processing and sterilization of medical products. Reference services both...... and sterilization dosimetry, optichromic dosimeters in the shape of small tubes for food processing, and ESR spectroscopy of alanine for reference dosimetry. In this paper the special features of radiation processing dosimetry are discussed, several commonly used dosimeters are reviewed, and factors leading...

Novel approaches to develop community-built biological network models for potential drug discovery.

Science.gov (United States)

Talikka, Marja; Bukharov, Natalia; Hayes, William S; Hofmann-Apitius, Martin; Alexopoulos, Leonidas; Peitsch, Manuel C; Hoeng, Julia

2017-08-01

Hundreds of thousands of data points are now routinely generated in clinical trials by molecular profiling and NGS technologies. A true translation of this data into knowledge is not possible without analysis and interpretation in a well-defined biology context. Currently, there are many public and commercial pathway tools and network models that can facilitate such analysis. At the same time, insights and knowledge that can be gained is highly dependent on the underlying biological content of these resources. Crowdsourcing can be employed to guarantee the accuracy and transparency of the biological content underlining the tools used to interpret rich molecular data. Areas covered: In this review, the authors describe crowdsourcing in drug discovery. The focal point is the efforts that have successfully used the crowdsourcing approach to verify and augment pathway tools and biological network models. Technologies that enable the building of biological networks with the community are also described. Expert opinion: A crowd of experts can be leveraged for the entire development process of biological network models, from ontologies to the evaluation of their mechanistic completeness. The ultimate goal is to facilitate biomarker discovery and personalized medicine by mechanistically explaining patients' differences with respect to disease prevention, diagnosis, and therapy outcome.

Biologically-inspired Learning in Pulsed Neural Networks

DEFF Research Database (Denmark)

Lehmann, Torsten; Woodburn, Robin

1999-01-01

Self-learning chips to implement many popular ANN (artificial neural network) algorithms are very difficult to design. We explain why this is so and say what lessons previous work teaches us in the design of self-learning systems. We offer a contribution to the `biologically-inspired' approach......, explaining what we mean by this term and providing an example of a robust, self-learning design that can solve simple classical-conditioning tasks. We give details of the design of individual circuits to perform component functions, which can then be combined into a network to solve the task. We argue...

Systems Biology Modeling of the Radiation Sensitivity Network: A Biomarker Discovery Platform

International Nuclear Information System (INIS)

Eschrich, Steven; Zhang Hongling; Zhao Haiyan; Boulware, David; Lee, Ji-Hyun; Bloom, Gregory; Torres-Roca, Javier F.

2009-01-01

Purpose: The discovery of effective biomarkers is a fundamental goal of molecular medicine. Developing a systems-biology understanding of radiosensitivity can enhance our ability of identifying radiation-specific biomarkers. Methods and Materials: Radiosensitivity, as represented by the survival fraction at 2 Gy was modeled in 48 human cancer cell lines. We applied a linear regression algorithm that integrates gene expression with biological variables, including ras status (mut/wt), tissue of origin and p53 status (mut/wt). Results: The biomarker discovery platform is a network representation of the top 500 genes identified by linear regression analysis. This network was reduced to a 10-hub network that includes c-Jun, HDAC1, RELA (p65 subunit of NFKB), PKC-beta, SUMO-1, c-Abl, STAT1, AR, CDK1, and IRF1. Nine targets associated with radiosensitization drugs are linked to the network, demonstrating clinical relevance. Furthermore, the model identified four significant radiosensitivity clusters of terms and genes. Ras was a dominant variable in the analysis, as was the tissue of origin, and their interaction with gene expression but not p53. Overrepresented biological pathways differed between clusters but included DNA repair, cell cycle, apoptosis, and metabolism. The c-Jun network hub was validated using a knockdown approach in 8 human cell lines representing lung, colon, and breast cancers. Conclusion: We have developed a novel radiation-biomarker discovery platform using a systems biology modeling approach. We believe this platform will play a central role in the integration of biology into clinical radiation oncology practice.

Alanine dosimetry for clinical applications. Proceedings

International Nuclear Information System (INIS)

Anton, M.

2006-05-01

The following topics are dealt with: Therapy level alanine dosimetry at the UK Nationational Physical Laboratory, alanine as a precision validation tool for reference dosimetry, composition of alanine pellet dosimeters, the angular dependence of the alanine ESR spectrum, the CIAE alanine dosimeter for radiotherapy level, a correction for temporal evolution effects in alanine dosimetry, next-generation services foe e-traceability to ionization radiation national standards, establishing e-traceability to HIST high-dose measurement standards, alanine dosimetry of dose delivery from clinical accelerators, the e-scan alanine dosimeter reader, alanine dosimetry at ISS, verification of the integral delivered dose for IMRT treatment in the head and neck region with ESR/alanine dosimetry, alanine dosimetry in helical tomotherapy beams, ESR dosimetry research and development at the University of Palermo, lithium formate as a low-dose EPR radiation dosimeter, sensitivity enhancement of alanine/EPR dosimetry. (HSI)

Developments in physical dosimetry and radiation protection; Entwicklungen in der physikalischen Dosimetrie im Strahlenschutz

Energy Technology Data Exchange (ETDEWEB)

Fiebich, Martin [Technische Hochschule Mittelhessen, Giessen (Germany). Inst. fuer Medizinische Physik und Strahlenschutz

2017-07-01

In the frame of physical dosimetry new dose units have been defined: the depth personal dose (equivalent dose in 10 mm depth) and the surface personal dose (equivalent dose in 0.07 mm depth). Physical dosimetry is applied for the determination of occupational radiation exposure, the radiation protected area control, the estimation of radiation exposure of patients during radiotherapy, for quality assurance and in research projects and optimization challenges. Developments have appeared with respect to punctual measuring chambers, eye lens dosimetry, OSL (optically stimulated luminescence) dosimetry, real-time dosimetry and Monte Carlo methods. New detection limits of about 1 micro Gy were reached.

Chinese Herbal Medicine Meets Biological Networks of Complex Diseases: A Computational Perspective

OpenAIRE

Shuo Gu; Jianfeng Pei

2017-01-01

With the rapid development of cheminformatics, computational biology, and systems biology, great progress has been made recently in the computational research of Chinese herbal medicine with in-depth understanding towards pharmacognosy. This paper summarized these studies in the aspects of computational methods, traditional Chinese medicine (TCM) compound databases, and TCM network pharmacology. Furthermore, we chose arachidonic acid metabolic network as a case study to demonstrate the regula...

Textbook of dosimetry. 4. ed.

International Nuclear Information System (INIS)

Ivanov, V.I.

1999-01-01

This textbook of dosimetry is devoted to the students in physics and technical physics of high education institutions, confronted with different application of atomic energy as well as with protection of population and environment against ionizing radiations. Atomic energy is highly beneficial for man but unfortunately incorporates potential dangers which manifest in accidents, the source of which is either insufficient training of the personnel, a criminal negligence or insufficient reliability of the nuclear facilities. The majority of the incident and accident events have had as origin the personnel errors. This was the case with both the 'Three Miles Island' (1979) and Chernobyl (1986) NPP accidents. The dosimetry science acquires a vital significance in accident situations since the data obtained by its procedures are essential in choosing the correct immediate actions, behaviour tactics, orientation of liquidation of accident consequences as well as in ensuring the health of population. An important accent is placed in this manual on clarification of the nature of physical processes taken place in dosimetric detectors, in establishing the relation between radiation field characteristics and the detector response as well as in defining different dosimetric quantities. The terminology and the units of physical quantities is based on the international system of units. The book contains the following 15 chapters: 1. Ionizing radiation field; 2. Radiation doses; 3. Physical bases of gamma radiation dosimetry; 4. Ionization dosimetric detectors; 5. Semiconductor dosimetric detectors; 6. Scintillation detection in the gamma radiation dosimetry; 7. Luminescent methods in dosimetry; 8. The photographic and chemical methods of gamma radiation dosimetry; 9. Neutron dosimetry; 10. Dosimetry of high intensity radiation; 11. Dosimetry of high energy Bremsstrahlung; 12. Measurement of the linear energy transfer; 13. Microdosimetry; 14. Dosimetry of incorporated

Learning and coding in biological neural networks

Science.gov (United States)

Fiete, Ila Rani

How can large groups of neurons that locally modify their activities learn to collectively perform a desired task? Do studies of learning in small networks tell us anything about learning in the fantastically large collection of neurons that make up a vertebrate brain? What factors do neurons optimize by encoding sensory inputs or motor commands in the way they do? In this thesis I present a collection of four theoretical works: each of the projects was motivated by specific constraints and complexities of biological neural networks, as revealed by experimental studies; together, they aim to partially address some of the central questions of neuroscience posed above. We first study the role of sparse neural activity, as seen in the coding of sequential commands in a premotor area responsible for birdsong. We show that the sparse coding of temporal sequences in the songbird brain can, in a network where the feedforward plastic weights must translate the sparse sequential code into a time-varying muscle code, facilitate learning by minimizing synaptic interference. Next, we propose a biologically plausible synaptic plasticity rule that can perform goal-directed learning in recurrent networks of voltage-based spiking neurons that interact through conductances. Learning is based on the correlation of noisy local activity with a global reward signal; we prove that this rule performs stochastic gradient ascent on the reward. Thus, if the reward signal quantifies network performance on some desired task, the plasticity rule provably drives goal-directed learning in the network. To assess the convergence properties of the learning rule, we compare it with a known example of learning in the brain. Song-learning in finches is a clear example of a learned behavior, with detailed available neurophysiological data. With our learning rule, we train an anatomically accurate model birdsong network that drives a sound source to mimic an actual zebrafinch song. Simulation and

Personnel neutron dosimetry

International Nuclear Information System (INIS)

Hankins, D.

1982-04-01

This edited transcript of a presentation on personnel neutron discusses the accuracy of present dosimetry practices, requirements, calibration, dosemeter types, quality factors, operational problems, and dosimetry for a criticality accident. 32 figs

Biana: a software framework for compiling biological interactions and analyzing networks.

Science.gov (United States)

Garcia-Garcia, Javier; Guney, Emre; Aragues, Ramon; Planas-Iglesias, Joan; Oliva, Baldo

2010-01-27

The analysis and usage of biological data is hindered by the spread of information across multiple repositories and the difficulties posed by different nomenclature systems and storage formats. In particular, there is an important need for data unification in the study and use of protein-protein interactions. Without good integration strategies, it is difficult to analyze the whole set of available data and its properties. We introduce BIANA (Biologic Interactions and Network Analysis), a tool for biological information integration and network management. BIANA is a Python framework designed to achieve two major goals: i) the integration of multiple sources of biological information, including biological entities and their relationships, and ii) the management of biological information as a network where entities are nodes and relationships are edges. Moreover, BIANA uses properties of proteins and genes to infer latent biomolecular relationships by transferring edges to entities sharing similar properties. BIANA is also provided as a plugin for Cytoscape, which allows users to visualize and interactively manage the data. A web interface to BIANA providing basic functionalities is also available. The software can be downloaded under GNU GPL license from http://sbi.imim.es/web/BIANA.php. BIANA's approach to data unification solves many of the nomenclature issues common to systems dealing with biological data. BIANA can easily be extended to handle new specific data repositories and new specific data types. The unification protocol allows BIANA to be a flexible tool suitable for different user requirements: non-expert users can use a suggested unification protocol while expert users can define their own specific unification rules.

Skin dosimetry - radiological protection aspects of skin dosimetry

International Nuclear Information System (INIS)

Dennis, J.A.

1991-01-01

Following a Workshop in Skin Dosimetry, a summary of the radiological protection aspects is given. Aspects discussed include routine skin monitoring and dose limits, the need for careful skin dosimetry in high accidental exposures, techniques for assessing skin dose at all relevant depths and the specification of dose quantities to be measured by personal dosemeters and the appropriate methods to be used in their calibration. (UK)

EURADOS intercomparison 2006 to harmonise European early warning dosimetry systems

International Nuclear Information System (INIS)

Dombrowski, H.; Neumaier, S.; Thompson, I. M. G.; Wissmann, F.

2009-01-01

In 2006, the European Radiation Dosimetry (EURADOS) Working Group on Environmental Radiation Monitoring (WG3) organised a third European intercomparison of dosimetry systems operated in national early warning networks. Similar to the intercomparisons in 1999 and 2002, the main aim of this exercise was to support the process of harmonisation of area monitoring in Europe by providing the network operators with basic information on the calibration and performance of their dosimetry systems. In order to characterise these systems, their following basic parameters were investigated: the response to terrestrial and cosmic radiation, the detectors' inherent background, the response at low dose rates, the energy dependence of the response as well as the sensitivity of the detector systems to small changes of the dose rate in a natural environmental radiation field. In the 2006 EURADOS intercomparison, scientists from seven countries participated to study the characteristics of 11 detector systems. All results are presented in terms of the operational quantity ambient dose equivalent, H * (10). The advent of this quantity has caused the development of new detector systems for area monitoring. Some of these new systems participated in a EURADOS intercomparison for the first time. The results are consistently presented together with uncertainties so that statistical effects can be distinguished from real detector features, which improves the interpretation of the results. By using the results of this intercomparison, some detectors were re-calibrated. The achievable improvements concerning harmonisation in dose-rate measurements in the natural environment are discussed. (authors)

ESR Dosimetry

International Nuclear Information System (INIS)

Baffa, Oswaldo; Rossi, Bruno; Graeff, Carlos; Kinoshita, Angela; Chen Abrego, Felipe; Santos, Adevailton Bernardo dos

2004-01-01

ESR dosimetry is widely used for several applications such as dose assessment in accidents, medical applications and sterilization of food and other materials. In this work the dosimetric properties of natural and synthetic Hydroxyapatite, Alanine, and 2-Methylalanine are presented. Recent results on the use of a K-Band (24 GHz) ESR spectrometer in dosimetry are also presented

Influence of bone metastases in the red marrow 131INa internal dosimetry

International Nuclear Information System (INIS)

Llina Fuentes, C.S.; Cabrejas, M.I.; Cabrejas, R.

2008-01-01

Full text: This research analyses the evaluation of the absorbed dose in the bone marrow for developing a calculation formalism, based on MIRD methodology, to take into account the influence of bone metastases in patients treated with 131 INa due to thyroid differentiated cancer (DTC). A methodology of image processing is stated for later quantification purposes. The dose contribution, mainly electronic, from trabecular bone and cortical bone to red marrow is considered and a general equation is developed to add that contribution. The biodistribution of active bone marrow in adults bone regions is considered from different studies (Cristy (1981), ICRP 70 (1995), Bouchet et al. (2000), ICRP 89 (2004)). It is assumed that the 60% of red marrow is in the axial skeleton, 25% in ribs, femoral head, proximal portion of chimney and breast bone, and 10% in skull and scapula. Accordingly to this distribution, the bone regions with more percentage are included to calculate the influence in the red marrow absorbed dose. The absorbed dose in bone marrow is calculated considering 4 sources: bone marrow, bone tissue with metastases, rest of the bone tissue without metastases and rest of soft tissue. Conversion factors for fifteen regions of the skeleton, obtained from Eckerman Monte Carlo simulations, were used to calculate absorbed dose in each region of bone. The absorbed dose from this formalism is based on specific biokinetic data from patients and dosimetric models. It was considered of interest to compare the results with the biological dosimetry in parallel. From this biological method, the accumulated absorbed dose from previous therapies and also the bone marrow absorbed dose due to the last radioiodine treatment can be obtained in order to compare dose assessment results between the developed formalism and biological dosimetry. The results obtained with the proposed formalism, show that lesions in some bones regions contribute more to the absorbed dose than lesions in

Bridging the gap between clinicians and systems biologists: from network biology to translational biomedical research.

Science.gov (United States)

Jinawath, Natini; Bunbanjerdsuk, Sacarin; Chayanupatkul, Maneerat; Ngamphaiboon, Nuttapong; Asavapanumas, Nithi; Svasti, Jisnuson; Charoensawan, Varodom

2016-11-22

With the wealth of data accumulated from completely sequenced genomes and other high-throughput experiments, global studies of biological systems, by simultaneously investigating multiple biological entities (e.g. genes, transcripts, proteins), has become a routine. Network representation is frequently used to capture the presence of these molecules as well as their relationship. Network biology has been widely used in molecular biology and genetics, where several network properties have been shown to be functionally important. Here, we discuss how such methodology can be useful to translational biomedical research, where scientists traditionally focus on one or a small set of genes, diseases, and drug candidates at any one time. We first give an overview of network representation frequently used in biology: what nodes and edges represent, and review its application in preclinical research to date. Using cancer as an example, we review how network biology can facilitate system-wide approaches to identify targeted small molecule inhibitors. These types of inhibitors have the potential to be more specific, resulting in high efficacy treatments with less side effects, compared to the conventional treatments such as chemotherapy. Global analysis may provide better insight into the overall picture of human diseases, as well as identify previously overlooked problems, leading to rapid advances in medicine. From the clinicians' point of view, it is necessary to bridge the gap between theoretical network biology and practical biomedical research, in order to improve the diagnosis, prevention, and treatment of the world's major diseases.

Retrospective accident dosimetry using trapped charges

Energy Technology Data Exchange (ETDEWEB)

Lee, J. I.; Kim, J. L.; Chang, I.; Kim, B. H. [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

2015-10-15

Dicentric chromosome aberrations technique scoring of aberrations in metaphases prepared from human lymphocytes is most commonly used. This is considered as a reliable technique because the sample is extracted from the individual human body itself. There are other techniques in biological dosimetry such as Fluorescence In Situ Hybridization (FISH) using translocations, premature chromosome condensation (PCC) and micronucleus assay. However the minimum detectable doses (MDD) are relatively high and sample preparation time is also relatively longer. Therefore, there is limitation in use of these techniques for the purpose of triage in a short time in case of emergency situation relating large number of persons. Electronic paramagnetic resonance (EPR) technique is based on the signal from unpaired electrons such as free radicals in irradiated materials especially tooth enamel, however it has also limitation for the purpose of triage because of difficulty of sample taking and its high MDD. Recently as physical methods, thermoluminescence (TL) and optically stimulated luminescence (OSL) technique have been attracted due to its lower MDD and simplicity of sample preparation. Density of the trapped charges is generally proportional to the radiation dose absorbed and the intensity of emitting light is also proportional to the density of trapped charges, thus it can be applied to measure radiation dose retrospectively. In this presentation, TL and OSL techniques are going to introduced and discussed as physical methods for retrospective accident dosimetry using trapped charges especially in electronic component materials. As a tool for dose reconstruction for emergency situation, thermoluminescece and optically stimulated luminescence techniques which are based on trapped charges during exposure of material are introduced. These techniques have several advantages such as high sensitivity, fast evaluation and ease to sample collection over common biological dosimetry and EPR

Dosimetry of ionizing radiation

International Nuclear Information System (INIS)

Musilek, L.; Seda, J.; Trousil, J.

1992-01-01

The publication deals with a major field of ionizing radiation dosimetry, viz., integrating dosimetric methods, which are the basic means of operative dose determination. It is divided into the following sections: physical and chemical effects of ionizing radiation; integrating dosimetric methods for low radiation doses (film dosimetry, nuclear emulsions, thermoluminescence, radiophotoluminescence, solid-state track detectors, integrating ionization dosemeters); dosimetry of high ionizing radiation doses (chemical dosimetric methods, dosemeters based on the coloring effect, activation detectors); additional methods applicable to integrating dosimetry (exoelectron emission, electron spin resonance, lyoluminescence, etc.); and calibration techniques for dosimetric instrumentation. (Z.S.). 422 refs

Design of a computation tool for neutron spectrometry and dosimetry through evolutionary neural networks

International Nuclear Information System (INIS)

Ortiz R, J. M.; Vega C, H. R.; Martinez B, M. R.; Gallego, E.

2009-10-01

The neutron dosimetry is one of the most complicated tasks of radiation protection, due to it is a complex technique and highly dependent of neutron energy. One of the first devices used to perform neutron spectrometry is the system known as spectrometric system of Bonner spheres, that continuous being one of spectrometers most commonly used. This system has disadvantages such as: the components weight, the low resolution of spectrum, long and drawn out procedure for the spectra reconstruction, which require an expert user in system management, the need of use a reconstruction code as BUNKIE, SAND, etc., which are based on an iterative reconstruction algorithm and whose greatest inconvenience is that for the spectrum reconstruction, are needed to provide to system and initial spectrum as close as possible to the desired spectrum get. Consequently, researchers have mentioned the need to developed alternative measurement techniques to improve existing monitoring systems for workers. Among these alternative techniques have been reported several reconstruction procedures based on artificial intelligence techniques such as genetic algorithms, artificial neural networks and hybrid systems of evolutionary artificial neural networks using genetic algorithms. However, the use of these techniques in the nuclear science area is not free of problems, so it has been suggested that more research is conducted in such a way as to solve these disadvantages. Because they are emerging technologies, there are no tools for the results analysis, so in this paper we present first the design of a computation tool that allow to analyze the neutron spectra and equivalent doses, obtained through the hybrid technology of neural networks and genetic algorithms. This tool provides an user graphical environment, friendly, intuitive and easy of operate. The speed of program operation is high, executing the analysis in a few seconds, so it may storage and or print the obtained information for

Clinical dosimetry

International Nuclear Information System (INIS)

Rassow, J.

1973-01-01

The main point of this paper on clinical dosimetry which is to be understood here as application of physical dosimetry on accelerators in medical practice, is based on dosimetric methodics. Following an explanation of the dose parameters and description of the dose distribution important for clinical practice as well as geometric irradiation parameters, the significance of a series of physical parameters such as accelerator energy, surface energy of average stopping power etc. is dealt with in detail. Following a section on field homogenization with bremsstrahlung and electron radiation, details on dosimetry in clinical practice are given. Finally, a few problems of dosemeter or monitor calibration on accelerators are described. The explanations are supplemented by a series of diagrams and tables. (ORU/LH) [de

A Reconfigurable and Biologically Inspired Paradigm for Computation Using Network-On-Chip and Spiking Neural Networks

Directory of Open Access Journals (Sweden)

Jim Harkin

2009-01-01

Full Text Available FPGA devices have emerged as a popular platform for the rapid prototyping of biological Spiking Neural Networks (SNNs applications, offering the key requirement of reconfigurability. However, FPGAs do not efficiently realise the biologically plausible neuron and synaptic models of SNNs, and current FPGA routing structures cannot accommodate the high levels of interneuron connectivity inherent in complex SNNs. This paper highlights and discusses the current challenges of implementing scalable SNNs on reconfigurable FPGAs. The paper proposes a novel field programmable neural network architecture (EMBRACE, incorporating low-power analogue spiking neurons, interconnected using a Network-on-Chip architecture. Results on the evaluation of the EMBRACE architecture using the XOR benchmark problem are presented, and the performance of the architecture is discussed. The paper also discusses the adaptability of the EMBRACE architecture in supporting fault tolerant computing.

Fast neutron spectrometry and dosimetry; Spectrometrie et dosimetrie des neutrons rapides

Energy Technology Data Exchange (ETDEWEB)

Blaize, S; Ailloud, J; Mariani, J; Millot, J P [Commissariat a l' Energie Atomique, Saclay (France). Centre d' Etudes Nucleaires

1958-07-01

We have studied fast neutron spectrometry and dosimetry through the recoil protons they produce in hydrogenated samples. In spectrometric, we used nuclear emulsions, in dosimetric, we used polyethylene coated with zinc sulphide and placed before a photomultiplier. (author)Fren. [French] Nous avons etudie la spectrometrie et la dosimetrie des neutrons rapides en utilisant les protons de recul qu'ils produisent dans une matiere hydrogenee. En spectrometrie, nous avons employe des emulsions nucleaires, en dosimetrie, du polyethylene recouvert de sulfure de zinc place devant un photomultiplicateur. (auteur)

A Systems’ Biology Approach to Study MicroRNA-Mediated Gene Regulatory Networks

Directory of Open Access Journals (Sweden)

Xin Lai

2013-01-01

Full Text Available MicroRNAs (miRNAs are potent effectors in gene regulatory networks where aberrant miRNA expression can contribute to human diseases such as cancer. For a better understanding of the regulatory role of miRNAs in coordinating gene expression, we here present a systems biology approach combining data-driven modeling and model-driven experiments. Such an approach is characterized by an iterative process, including biological data acquisition and integration, network construction, mathematical modeling and experimental validation. To demonstrate the application of this approach, we adopt it to investigate mechanisms of collective repression on p21 by multiple miRNAs. We first construct a p21 regulatory network based on data from the literature and further expand it using algorithms that predict molecular interactions. Based on the network structure, a detailed mechanistic model is established and its parameter values are determined using data. Finally, the calibrated model is used to study the effect of different miRNA expression profiles and cooperative target regulation on p21 expression levels in different biological contexts.

Eleventh DOE workshop on personnel neutron dosimetry

International Nuclear Information System (INIS)

1991-01-01

Since its formation, the Office of Health (EH-40) has stressed the importance of the exchange of information related to and improvements in neutron dosimetry. This Workshop was the eleventh in the series sponsored by the Department of Energy (DOE). It provided a forum for operational personnel at DOE facilities to discuss current issues related to neutron dosimetry and for leading investigators in the field to discuss promising approaches for future research. A total of 26 papers were presented including the keynote address by Dr. Warren K. Sinclair, who spoke on, ''The 1990 Recommendations of the ICRP and their Biological Background.'' The first several papers discussed difficulties in measuring neutrons of different energies and ways of compensating or deriving correction factors at individual facilities. Presentations were also given by the US Navy and Air Force. Current research in neutron dosimeter development was the subject of the largest number of papers. These included a number on the development of neutron spectrometers

Biological instability in a chlorinated drinking water distribution network.

Science.gov (United States)

Nescerecka, Alina; Rubulis, Janis; Vital, Marius; Juhna, Talis; Hammes, Frederik

2014-01-01

The purpose of a drinking water distribution system is to deliver drinking water to the consumer, preferably with the same quality as when it left the treatment plant. In this context, the maintenance of good microbiological quality is often referred to as biological stability, and the addition of sufficient chlorine residuals is regarded as one way to achieve this. The full-scale drinking water distribution system of Riga (Latvia) was investigated with respect to biological stability in chlorinated drinking water. Flow cytometric (FCM) intact cell concentrations, intracellular adenosine tri-phosphate (ATP), heterotrophic plate counts and residual chlorine measurements were performed to evaluate the drinking water quality and stability at 49 sampling points throughout the distribution network. Cell viability methods were compared and the importance of extracellular ATP measurements was examined as well. FCM intact cell concentrations varied from 5×10(3) cells mL(-1) to 4.66×10(5) cells mL(-1) in the network. While this parameter did not exceed 2.1×10(4) cells mL(-1) in the effluent from any water treatment plant, 50% of all the network samples contained more than 1.06×10(5) cells mL(-1). This indisputably demonstrates biological instability in this particular drinking water distribution system, which was ascribed to a loss of disinfectant residuals and concomitant bacterial growth. The study highlights the potential of using cultivation-independent methods for the assessment of chlorinated water samples. In addition, it underlines the complexity of full-scale drinking water distribution systems, and the resulting challenges to establish the causes of biological instability.

Introduction to the special issue of Radiation Protection Dosimetry

International Nuclear Information System (INIS)

Anon.

2016-01-01

This special issue is a collection of peer-reviewed articles derived from presentations at the fourth EPR BioDose Meeting, held in Hanover, NH, USA in 4-8 October 2015. Organised by The International Association of Biological and EPR Radiation Dosimetry (IABERD), this meeting was held in combination with two international conferences (The International Symposium on EPR Dosimetry and Dating and The International Conference on Biodosimetry) and a symposium (The International EPR Society). The primary focus of this conference was on medical response to events in which large numbers of individuals may be exposed to significant levels of ionising radiation; topics included biodosimetry techniques, radiation mitigators, model systems to develop countermeasures, new data from different exposure events and the implication of these methods in a radiological emergency or in terrorist attack scenarios. (authors)

NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks.

Science.gov (United States)

Theodosiou, Theodosios; Efstathiou, Georgios; Papanikolaou, Nikolas; Kyrpides, Nikos C; Bagos, Pantelis G; Iliopoulos, Ioannis; Pavlopoulos, Georgios A

2017-07-14

Nowadays, due to the technological advances of high-throughput techniques, Systems Biology has seen a tremendous growth of data generation. With network analysis, looking at biological systems at a higher level in order to better understand a system, its topology and the relationships between its components is of a great importance. Gene expression, signal transduction, protein/chemical interactions, biomedical literature co-occurrences, are few of the examples captured in biological network representations where nodes represent certain bioentities and edges represent the connections between them. Today, many tools for network visualization and analysis are available. Nevertheless, most of them are standalone applications that often (i) burden users with computing and calculation time depending on the network's size and (ii) focus on handling, editing and exploring a network interactively. While such functionality is of great importance, limited efforts have been made towards the comparison of the topological analysis of multiple networks. Network Analysis Provider (NAP) is a comprehensive web tool to automate network profiling and intra/inter-network topology comparison. It is designed to bridge the gap between network analysis, statistics, graph theory and partially visualization in a user-friendly way. It is freely available and aims to become a very appealing tool for the broader community. It hosts a great plethora of topological analysis methods such as node and edge rankings. Few of its powerful characteristics are: its ability to enable easy profile comparisons across multiple networks, find their intersection and provide users with simplified, high quality plots of any of the offered topological characteristics against any other within the same network. It is written in R and Shiny, it is based on the igraph library and it is able to handle medium-scale weighted/unweighted, directed/undirected and bipartite graphs. NAP is available at http://bioinformatics.med.uoc.gr/NAP .

Non-conventional personal dosimetry techniques

International Nuclear Information System (INIS)

Regulla, D.F.

1984-01-01

Established dosimetry has achieved a high standard in personnel monitoring. This applies particularly to photon dosimetry. Nevertheless, even in photon dosimetry, improvements and changes are being made. The reason may be technological progress, or the introduction of new tasks on the basis of the recommendations of international bodies (e.g. the new ICRU measurement unit) of national legislation. Since we are restricting ourselves here to technical trends the author would like to draw attention to various activities of current interest, e.g. the computation of receptor-related conversion coefficients from personal dose to organ or body doses, taking into account the conditions of exposure with respect to differential energy and angular distribution of the radiation field. Realistic data on exposure geometry are taken from work place analyses. Furthermore, the data banks of central personal dosimetry services are subject to statistical evaluation and radiation protection trend analysis. Technological progress and developments are considered from the point of view of personal dosimetry, partial body or extremity dosimetry and accidental dosimetry

[Application of network biology on study of traditional Chinese medicine].

Science.gov (United States)

Tian, Sai-Sai; Yang, Jian; Zhao, Jing; Zhang, Wei-Dong

2018-01-01

With the completion of the human genome project, people have gradually recognized that the functions of the biological system are fulfilled through network-type interaction between genes, proteins and small molecules, while complex diseases are caused by the imbalance of biological processes due to a number of gene expression disorders. These have contributed to the rise of the concept of the "multi-target" drug discovery. Treatment and diagnosis of traditional Chinese medicine are based on holism and syndrome differentiation. At the molecular level, traditional Chinese medicine is characterized by multi-component and multi-target prescriptions, which is expected to provide a reference for the development of multi-target drugs. This paper reviews the application of network biology in traditional Chinese medicine in six aspects, in expectation to provide a reference to the modernized study of traditional Chinese medicine. Copyright© by the Chinese Pharmaceutical Association.

Cytogenetic Dosimetry: Applications in Preparedness for and Response to Radiation Emergencies (Spanish Edition); Dosimetría citogenética: Aplicaciones en materia de preparación y respuesta a las emergencias radiológicas

Energy Technology Data Exchange (ETDEWEB)

NONE

2014-10-15

Cytogenetic dosimetry is recognized as a valuable dose assessment method which fills a gap in dosimetric technology, particularly when there are difficulties in interpreting the data, in cases where there is reason to believe that persons not wearing dosimeters have been exposed to radiation, in cases of claims for compensation for radiation injuries that are not supported by unequivocal dosimetric evidence, or in cases of exposure over an individual’s working lifetime. The IAEA has maintained a long standing involvement in biological dosimetry commencing in 1978. This association has been through a sequence of coordinated research programmes (CRPs), the running of regional and national training courses, the sponsorship of individual training fellowships, and the provision of equipment to laboratories in Member States, establishing capabilities in biological dosimetry. From this has arisen the provision to Member States of advice regarding the best focus for research and suggestions for the most suitable techniques for future practice in biological dosimetry. One CRP resulted in the publication in 1986 of a manual, entitled Biological Dosimetry: Chromosomal Aberration Analysis for Dose Assessment (Technical Reports Series No. 260). This was superseded in 2001 by a revised second edition, Technical Reports Series No. 405. This present publication constitutes a third edition, with extensive updating to reflect the considerable advances that have been made in cytogenetic biological dosimetry during the past decade.

Inferring hidden causal relations between pathway members using reduced Google matrix of directed biological networks

Science.gov (United States)

2018-01-01

Signaling pathways represent parts of the global biological molecular network which connects them into a seamless whole through complex direct and indirect (hidden) crosstalk whose structure can change during development or in pathological conditions. We suggest a novel methodology, called Googlomics, for the structural analysis of directed biological networks using spectral analysis of their Google matrices, using parallels with quantum scattering theory, developed for nuclear and mesoscopic physics and quantum chaos. We introduce analytical “reduced Google matrix” method for the analysis of biological network structure. The method allows inferring hidden causal relations between the members of a signaling pathway or a functionally related group of genes. We investigate how the structure of hidden causal relations can be reprogrammed as a result of changes in the transcriptional network layer during cancerogenesis. The suggested Googlomics approach rigorously characterizes complex systemic changes in the wiring of large causal biological networks in a computationally efficient way. PMID:29370181

Dosimetry and Calibration Section

International Nuclear Information System (INIS)

Otto, T.

1999-01-01

The Dosimetry and Calibration Section fulfils two tasks within CERN's Radiation Protection Group: the Individual Dosimetry Service monitors more than 5000 persons potentially exposed to ionizing radiation on the CERN sites, and the Calibration Laboratory verifies throughout the year, at regular intervals, over 1000 instruments, monitors, and electronic dosimeters used by RP Group. The establishment of a Quality Assurance System for the Individual Dosimetry Service, a requirement of the new Swiss Ordinance for personal dosimetry, put a considerable workload on the section. Together with an external consultant it was decided to identify and then describe the different 'processes' of the routine work performed in the dosimetry service. The resulting Quality Manual was submitted to the Federal Office for Public Health in Bern in autumn. The CERN Individual Dosimetry Service will eventually be officially endorsed after a successful technical test in March 1999. On the technical side, the introduction of an automatic development machine for gamma films was very successful. It processes the dosimetric films without an operator being present, and its built-in regeneration mechanism keeps the concentration of the processing chemicals at a constant level

Dosimetry for radiation processing

International Nuclear Information System (INIS)

McLaughlin, W.L.; Boyd, A.W.; Chadwick, K.H.; McDonald, J.C.; Miller, A.

1989-01-01

Radiation processing is a relatively young industry with broad applications and considerable commercial success. Dosimetry provides an independent and effective way of developing and controlling many industrial processes. In the sterilization of medical devices and in food irradiation, where the radiation treatment impacts directly on public health, the measurements of dose provide the official means of regulating and approving its use. In this respect, dosimetry provides the operator with a means of characterizing the facility, of proving that products are treated within acceptable dose limits and of controlling the routine operation. This book presents an up-to-date review of the theory, data and measurement techniques for radiation processing dosimetry in a practical and useful way. It is hoped that this book will lead to improved measurement procedures, more accurate and precise dosimetry and a greater appreciation of the necessity of dosimetry for radiation processing. (author)

Yeast systems biology to unravel the network of life

DEFF Research Database (Denmark)

Mustacchi, Roberta; Hohmann, S; Nielsen, Jens

2006-01-01

Systems biology focuses on obtaining a quantitative description of complete biological systems, even complete cellular function. In this way, it will be possible to perform computer-guided design of novel drugs, advanced therapies for treatment of complex diseases, and to perform in silico design....... Furthermore, it serves as an industrial workhorse for production of a wide range of chemicals and pharmaceuticals. Systems biology involves the combination of novel experimental techniques from different disciplines as well as functional genomics, bioinformatics and mathematical modelling, and hence no single...... laboratory has access to all the necessary competences. For this reason the Yeast Systems Biology Network (YSBN) has been established. YSBN will coordinate research efforts, in yeast systems biology and, through the recently obtained EU funding for a Coordination Action, it will be possible to set...

Computing chemical organizations in biological networks.

Science.gov (United States)

Centler, Florian; Kaleta, Christoph; di Fenizio, Pietro Speroni; Dittrich, Peter

2008-07-15

Novel techniques are required to analyze computational models of intracellular processes as they increase steadily in size and complexity. The theory of chemical organizations has recently been introduced as such a technique that links the topology of biochemical reaction network models to their dynamical repertoire. The network is decomposed into algebraically closed and self-maintaining subnetworks called organizations. They form a hierarchy representing all feasible system states including all steady states. We present three algorithms to compute the hierarchy of organizations for network models provided in SBML format. Two of them compute the complete organization hierarchy, while the third one uses heuristics to obtain a subset of all organizations for large models. While the constructive approach computes the hierarchy starting from the smallest organization in a bottom-up fashion, the flux-based approach employs self-maintaining flux distributions to determine organizations. A runtime comparison on 16 different network models of natural systems showed that none of the two exhaustive algorithms is superior in all cases. Studying a 'genome-scale' network model with 762 species and 1193 reactions, we demonstrate how the organization hierarchy helps to uncover the model structure and allows to evaluate the model's quality, for example by detecting components and subsystems of the model whose maintenance is not explained by the model. All data and a Java implementation that plugs into the Systems Biology Workbench is available from http://www.minet.uni-jena.de/csb/prj/ot/tools.

Quality control of X-ray irradiator by biological markers

International Nuclear Information System (INIS)

Miura, Miwa; Lukmanul Hakkim, F.; Yoshida, Masahiro; Matsuda, Naoki; Morita, Naoko

2011-01-01

The exposure of animals or cultured cells to radiation is the essential and common step in experimental researches to elucidate biological effects of radiation. When an X-ray generator is used as a radiation source, physical parameters including dose, dose rate, and the energy spectrum of X-ray play crucial roles in biological outcome. Therefore, those parameters are the important points to be checked in quality control and to be carefully considered in advance to the irradiation to obtain the accurate and reproductive results. Here we measured radiation dose emitted from the X-ray irradiator for research purposes by using clonogenic survival of cultured mammalian cells as a biological marker in parallel with physical dosimetry. The results drawn from both methods exhibited good consistency in the dose distribution on the irradiation stage. Furthermore, the close relationship was observed between cell survival and the photon energy spectrum by using different filter components. These results suggest that biological dosimetry is applicable to quality control of X-ray irradiator in adjunct to physical dosimetry and that it possibly helps better understanding of the optimal irradiating condition by X-ray users in life-science field. (author)

Thin film tritium dosimetry

Science.gov (United States)

Moran, Paul R.

1976-01-01

The present invention provides a method for tritium dosimetry. A dosimeter comprising a thin film of a material having relatively sensitive RITAC-RITAP dosimetry properties is exposed to radiation from tritium, and after the dosimeter has been removed from the source of the radiation, the low energy electron dose deposited in the thin film is determined by radiation-induced, thermally-activated polarization dosimetry techniques.

The implications of the publication 92 of the ICRP for the neutron dosimetry

International Nuclear Information System (INIS)

Thomas, R.H.

2004-01-01

This article gives some comments on the neutron dosimetry in the publication 92 called 'Relative Biological Effectiveness, Quality factor and Radiation weighting factor'. the accent is put on the question of the weighting factor given to the radiation. (N.C.)

A TLD dose algorithm using artificial neural networks

International Nuclear Information System (INIS)

Moscovitch, M.; Rotunda, J.E.; Tawil, R.A.; Rathbone, B.A.

1995-01-01

An artificial neural network was designed and used to develop a dose algorithm for a multi-element thermoluminescence dosimeter (TLD). The neural network architecture is based on the concept of functional links network (FLN). Neural network is an information processing method inspired by the biological nervous system. A dose algorithm based on neural networks is fundamentally different as compared to conventional algorithms, as it has the capability to learn from its own experience. The neural network algorithm is shown the expected dose values (output) associated with given responses of a multi-element dosimeter (input) many times. The algorithm, being trained that way, eventually is capable to produce its own unique solution to similar (but not exactly the same) dose calculation problems. For personal dosimetry, the output consists of the desired dose components: deep dose, shallow dose and eye dose. The input consists of the TL data obtained from the readout of a multi-element dosimeter. The neural network approach was applied to the Harshaw Type 8825 TLD, and was shown to significantly improve the performance of this dosimeter, well within the U.S. accreditation requirements for personnel dosimeters

Neutron generator (HIRRAC) and dosimetry study.

Science.gov (United States)

Endo, S; Hoshi, M; Takada, J; Tauchi, H; Matsuura, S; Takeoka, S; Kitagawa, K; Suga, S; Komatsu, K

1999-12-01

Dosimetry studies have been made for neutrons from a neutron generator at Hiroshima University (HIRRAC) which is designed for radiobiological research. Neutrons in an energy range from 0.07 to 2.7 MeV are available for biological irradiations. The produced neutron energies were measured and evaluated by a 3He-gas proportional counter. Energy spread was made certain to be small enough for radiobiological studies. Dose evaluations were performed by two different methods, namely use of tissue equivalent paired ionization chambers and activation of method with indium foils. Moreover, energy deposition spectra in small targets of tissue equivalent materials, so-called lineal energy spectrum, were also measured and are discussed. Specifications for biological irradiation are presented in terms of monoenergetic beam conditions, dose rates and deposited energy spectra.

Measurement uncertainty. A practical guide for Secondary Standards Dosimetry Laboratories

International Nuclear Information System (INIS)

2008-05-01

The need for international traceability for radiation dose measurements has been understood since the early nineteen-sixties. The benefits of high dosimetric accuracy were recognized, particularly in radiotherapy, where the outcome of treatments is dependent on the radiation dose delivered to patients. When considering radiation protection dosimetry, the uncertainty may be greater than for therapy, but proper traceability of the measurements is no less important. To ensure harmonization and consistency in radiation measurements, the International Atomic Energy Agency (IAEA) and the World Health Organization (WHO) created a Network of Secondary Standards Dosimetry Laboratories (SSDLs) in 1976. An SSDL is a laboratory that has been designated by the competent national authorities to undertake the duty of providing the necessary link in the traceability chain of radiation dosimetry to the international measurement system (SI, for Systeme International) for radiation metrology users. The role of the SSDLs is crucial in providing traceable calibrations; they disseminate calibrations at specific radiation qualities appropriate for the use of radiation measuring instruments. Historically, although the first SSDLs were established mainly to provide radiotherapy level calibrations, the scope of their work has expanded over the years. Today, many SSDLs provide traceability for radiation protection measurements and diagnostic radiology in addition to radiotherapy. Some SSDLs, with the appropriate facilities and expertise, also conduct quality audits of the clinical use of the calibrated dosimeters - for example, by providing postal dosimeters for dose comparisons for medical institutions or on-site dosimetry audits with an ion chamber and other appropriate equipment. The requirements for traceable and reliable calibrations are becoming more important. For example, for international trade where radiation products are manufactured within strict quality control systems, it is

A reverse engineering approach to optimize experiments for the construction of biological regulatory networks.

Science.gov (United States)

Zhang, Xiaomeng; Shao, Bin; Wu, Yangle; Qi, Ouyang

2013-01-01

One of the major objectives in systems biology is to understand the relation between the topological structures and the dynamics of biological regulatory networks. In this context, various mathematical tools have been developed to deduct structures of regulatory networks from microarray expression data. In general, from a single data set, one cannot deduct the whole network structure; additional expression data are usually needed. Thus how to design a microarray expression experiment in order to get the most information is a practical problem in systems biology. Here we propose three methods, namely, maximum distance method, trajectory entropy method, and sampling method, to derive the optimal initial conditions for experiments. The performance of these methods is tested and evaluated in three well-known regulatory networks (budding yeast cell cycle, fission yeast cell cycle, and E. coli. SOS network). Based on the evaluation, we propose an efficient strategy for the design of microarray expression experiments.

Fundamentals of x-ray dosimetry

International Nuclear Information System (INIS)

Roesch, W.C.

1976-01-01

Fundamental information about x-ray dosimetry is presented. Definitions are given and expanded on for dose, absorbed dose including microdosimetry, radiation physics (properties of the radiation that are important to dosimetry), and dosimetry (how the properties are dealt with in determining dose). 5 figs, 12 refs

Biological mechanisms beyond network analysis via mathematical modeling. Comment on "Network science of biological systems at different scales: A review" by Marko Gosak et al.

Science.gov (United States)

Pedersen, Morten Gram

2018-03-01

Methods from network theory are increasingly used in research spanning from engineering and computer science to psychology and the social sciences. In this issue, Gosak et al. [1] provide a thorough review of network science applications to biological systems ranging from the subcellular world via neuroscience to ecosystems, with special attention to the insulin-secreting beta-cells in pancreatic islets.

Standards for radiation protection and diagnostic radiology at the IAEA Dosimetry Laboratory

International Nuclear Information System (INIS)

Pernicka, F.; Andreo, P.; Meghzifene, A.; Czap, L.; Girzikowsky, R.

1999-01-01

International standardization in dosimetry is essential for the successful exploitation of radiation technology. The IAEA dosimetry programme is focused into services provided to Member States through the IAEA/WHO Network of Secondary Standard Dosimetry Laboratories (SSDLs), to radiotherapy centres and radiation processing facilities. Radiation protection quantities defined by ICRU and ICRP are used to relate the risk due to exposure to ionizing radiation to a single quantity, irrespective of the type of radiation, which takes into account the human body as a receptor. Two types of quantities, limiting and operational, can be related to basic physical quantities which are defined without need for considering specific aspects of radiation protection, e.g. air kerma for photons and fluence for neutrons. The use of a dosimeter for measurements in radiation protection requires a calibration in terms of a physical quantity together with a conversion from physical into protection quantities by means of a factor or a coefficient

Thermoluminescent dosimetry in veterinary diagnostic radiology

International Nuclear Information System (INIS)

Hernández-Ruiz, L.; Jimenez-Flores, Y.; Rivera-Montalvo, T.; Arias-Cisneros, L.; Méndez-Aguilar, R.E.; Uribe-Izquierdo, P.

2012-01-01

This paper presents the results of Environmental and Personnel Dosimetry made in a radiology area of a veterinary hospital. Dosimetry was realized using thermoluminescent (TL) materials. Environmental Dosimetry results show that areas closer to the X-ray equipment are safe. Personnel Dosimetry shows important measurements of daily workday in some persons near to the limit established by ICRP. TL results of radiation measurement suggest TLDs are good candidates as a dosimeter to radiation dosimetry in veterinary radiology. - Highlights: ► Personnel dosimetry in laboratory veterinary diagnostic was determined. ► Student workplaces are safe against radiation. ► Efficiency value of apron lead was determined. ► X-ray beams distribution into veterinarian laboratory was measured.

Sixth symposium on neutron dosimetry

International Nuclear Information System (INIS)

1987-01-01

This booklet contains all abstracts of papers presented in 13 sessions. Main topics: Cross sections and Kerma factors; analytical radiobiology; detectors for personnel monitoring; secondary charged particles and microdosimetric basis of q-value for neutrons; personnel dosimetry; concepts for radiation protection; ambient monitoring; TEPC and ion chambers in radiation protection; beam dosimetry; track detectors (CR-39); dosimetry at biomedical irradiation facilities; health physics at therapy facilities; calibration for radiation protection; devices for beam dosimetry (TLD and miscellaneous); therapy and biomedical irradiation facilities; treatment planning. (HP)

Environmental dosimetry

International Nuclear Information System (INIS)

Gold, R.

1977-01-01

For more than 60 years, natural radiation has offered broad opportunities for basic research as evidenced by many fundamental discoveries. Within the last decade, however, dramatic changes have occurred in the motivation and direction of this research. The urgent need for economical energy sources entailing acceptably low levels of environmental impact has compelled the applied aspects of our radiation environment to become overriding considerations. It is within this general framework that state-of-the-art environmental dosimetry techniques are reviewed. Although applied motivation and relevance underscores the current milieu for both reactor and environmental dosimetry, a perhaps even more unifying force is the broad similarity of reactor and environmental radiation fields. In this review, a comparison of these two mixed radiation fields is presented stressing the underlying similarities that exist. On this basis, the evolution of a strong inner bond between dosimetry methods for both reactor and environmental radiation fields is described. The existence of this bond will be illustrated using representative examples of observed spectra. Dosimetry methods of particularly high applicability for both of these fields are described. Special emphasis is placed on techniques of high sensitivity and absolute accuracy which are capable of resolving the components of these mixed radiation fields

Nuclear accident dosimetry

International Nuclear Information System (INIS)

1982-01-01

The film presents statistical data on criticality accidents. It outlines past IAEA activities on criticality accident dosimetry and the technical documents that resulted from this work. The film furthermore illustrates an international comparison study on nuclear accident dosimetry conducted at the Atomic Energy Research Establishment, Harwell, United Kingdom

Nuclear accident dosimetry

Energy Technology Data Exchange (ETDEWEB)

NONE

1983-12-31

The film presents statistical data on criticality accidents. It outlines past IAEA activities on criticality accident dosimetry and the technical documents that resulted from this work. The film furthermore illustrates an international comparison study on nuclear accident dosimetry conducted at the Atomic Energy Research Establishment, Harwell, United Kingdom

Performance testing of dosimetry processors, status of NRC rulemaking for improved personnel dosimetry processing, and some beta dosimetry and instrumentation problems observed by NRC regional inspectors

International Nuclear Information System (INIS)

Dennis, N.A.; Kinneman, J.D.; Costello, F.M.; White, J.R.; Nimitz, R.L.

1983-01-01

Early dosimetry processor performance studies conducted between 1967 and 1979 by several different investigators indicated that a significant percentage of personnel dosimetry processors may not be performing with a reasonable degree of accuracy. Results of voluntary performance testing of US personnel dosimetry processors against the final Health Physics Society Standard, Criteria for Testing Personnel Dosimetry Performance by the University of Michigan for the Nuclear Regulatory Commission (NRC) will be summarized with emphasis on processor performance in radiation categories involving beta particles and beta particles and photon mixtures. The current status of the NRC's regulatory program for improved personnel dosimetry processing will be reviewed. The NRC is proposing amendments to its regulations, 10 CFR Part 20, that would require its licensees to utilize specified personnel dosimetry services from processors accredited by the National Voluntary Laboratory Accreditation Program of the National Bureau of Standards. Details of the development and schedule for implementation of the program will be highlighted. Finally, selected beta dosimetry and beta instrumentation problems observed by NRC Regional Staff during inspections of NRC licensed facilities will be discussed

Radiation Protection and Dosimetry An Introduction to Health Physics

CERN Document Server

Stabin, Michael G

2007-01-01

This comprehensive text provides an overview of all relevant topics in the field of radiation protection (health physics). Radiation Protection and Dosimetry serves as an essential handbook for practicing health physics professionals, and is also ideal as a teaching text for courses at the university level. The book is organized to introduce the reader to basic principles of radiation decay and interactions, to review current knowledge and historical aspects of the biological effects of radiation, and to cover important operational topics such as radiation shielding and dosimetry. In addition to presenting the most up to date treatment of the topics and references to the literature, most chapters contain numerical problems with their solutions for use in teaching or self assessment. One chapter is devoted to Environmental Health Physics, which was written in collaboration with leading professionals in the area.

Impact of heuristics in clustering large biological networks.

Science.gov (United States)

Shafin, Md Kishwar; Kabir, Kazi Lutful; Ridwan, Iffatur; Anannya, Tasmiah Tamzid; Karim, Rashid Saadman; Hoque, Mohammad Mozammel; Rahman, M Sohel

2015-12-01

Traditional clustering algorithms often exhibit poor performance for large networks. On the contrary, greedy algorithms are found to be relatively efficient while uncovering functional modules from large biological networks. The quality of the clusters produced by these greedy techniques largely depends on the underlying heuristics employed. Different heuristics based on different attributes and properties perform differently in terms of the quality of the clusters produced. This motivates us to design new heuristics for clustering large networks. In this paper, we have proposed two new heuristics and analyzed the performance thereof after incorporating those with three different combinations in a recently celebrated greedy clustering algorithm named SPICi. We have extensively analyzed the effectiveness of these new variants. The results are found to be promising. Copyright © 2015 Elsevier Ltd. All rights reserved.

Structural identifiability of cyclic graphical models of biological networks with latent variables.

Science.gov (United States)

Wang, Yulin; Lu, Na; Miao, Hongyu

2016-06-13

Graphical models have long been used to describe biological networks for a variety of important tasks such as the determination of key biological parameters, and the structure of graphical model ultimately determines whether such unknown parameters can be unambiguously obtained from experimental observations (i.e., the identifiability problem). Limited by resources or technical capacities, complex biological networks are usually partially observed in experiment, which thus introduces latent variables into the corresponding graphical models. A number of previous studies have tackled the parameter identifiability problem for graphical models such as linear structural equation models (SEMs) with or without latent variables. However, the limited resolution and efficiency of existing approaches necessarily calls for further development of novel structural identifiability analysis algorithms. An efficient structural identifiability analysis algorithm is developed in this study for a broad range of network structures. The proposed method adopts the Wright's path coefficient method to generate identifiability equations in forms of symbolic polynomials, and then converts these symbolic equations to binary matrices (called identifiability matrix). Several matrix operations are introduced for identifiability matrix reduction with system equivalency maintained. Based on the reduced identifiability matrices, the structural identifiability of each parameter is determined. A number of benchmark models are used to verify the validity of the proposed approach. Finally, the network module for influenza A virus replication is employed as a real example to illustrate the application of the proposed approach in practice. The proposed approach can deal with cyclic networks with latent variables. The key advantage is that it intentionally avoids symbolic computation and is thus highly efficient. Also, this method is capable of determining the identifiability of each single parameter and

Automatic compilation from high-level biologically-oriented programming language to genetic regulatory networks.

Science.gov (United States)

Beal, Jacob; Lu, Ting; Weiss, Ron

2011-01-01

The field of synthetic biology promises to revolutionize our ability to engineer biological systems, providing important benefits for a variety of applications. Recent advances in DNA synthesis and automated DNA assembly technologies suggest that it is now possible to construct synthetic systems of significant complexity. However, while a variety of novel genetic devices and small engineered gene networks have been successfully demonstrated, the regulatory complexity of synthetic systems that have been reported recently has somewhat plateaued due to a variety of factors, including the complexity of biology itself and the lag in our ability to design and optimize sophisticated biological circuitry. To address the gap between DNA synthesis and circuit design capabilities, we present a platform that enables synthetic biologists to express desired behavior using a convenient high-level biologically-oriented programming language, Proto. The high level specification is compiled, using a regulatory motif based mechanism, to a gene network, optimized, and then converted to a computational simulation for numerical verification. Through several example programs we illustrate the automated process of biological system design with our platform, and show that our compiler optimizations can yield significant reductions in the number of genes (~ 50%) and latency of the optimized engineered gene networks. Our platform provides a convenient and accessible tool for the automated design of sophisticated synthetic biological systems, bridging an important gap between DNA synthesis and circuit design capabilities. Our platform is user-friendly and features biologically relevant compiler optimizations, providing an important foundation for the development of sophisticated biological systems.

Quantitative imaging for clinical dosimetry

Energy Technology Data Exchange (ETDEWEB)

Bardies, Manuel [INSERM U601, 9 Quai Moncousu, 44093 Nantes (France)]. E-mail: manu@nantes.inserm.fr; Flux, Glenn [Department of Physics, Royal Marsden NHS Trust, Sutton (United Kingdom); Lassmann, Michael [Department of Nuclear Medicine, Julis-Maximilians University, Wuerzburg (Germany); Monsieurs, Myriam [Department of Health Physics, University of Ghent, 9000 Ghent (Belgium); Savolainen, Sauli [Department of Physical Sciences, University of Helsinki and HUS, Helsinki Medical Imaging Center, Helsinki University Central Hospital (Finland); Strand, Sven-Erik [Medical Radiation Physics, Department of Clinical Sciences Lund, Lund University (Sweden)

2006-12-20

Patient-specific dosimetry in nuclear medicine is now a legal requirement in many countries throughout the EU for targeted radionuclide therapy (TRT) applications. In order to achieve that goal, an increased level of accuracy in dosimetry procedures is needed. Current research in nuclear medicine dosimetry should not only aim at developing new methods to assess the delivered radiation absorbed dose at the patient level, but also to ensure that the proposed methods can be put into practice in a sufficient number of institutions. A unified dosimetry methodology is required for making clinical outcome comparisons possible.

Guide for dosimetry in radiation research on food and agricultural products

International Nuclear Information System (INIS)

2002-01-01

This guide covers the minimum requirements for dosimetry and absorbed-dose validation needed to conduct research on the irradiation of food and agricultural products. Such research includes establishment of the quantitative relationship between the absorbed dose and the relevant effects in these products. This guide also describes the overall need for dosimetry in such research, and in reporting of the results. This guide is intended for use by research scientists in the food and agricultural communities, and not just scientists conducting irradiation research. It, therefore, includes more tutorial information than most other ASTM and ISO/ASTM dosimetry standards for radiation processing. This guide is in no way intended to limit the flexibility of the experimenter in the experimental design. However, the radiation source and experimental set up should be chosen such that the results of the experiment will be beneficial and understandable to other scientists, regulatory agencies, and the food and agricultural communities. The effects produced by ionizing radiation in biological systems depend on a large number of factors which may be physical, physiological, or chemical. Although not treated in detail in this guide, quantitative data of environmental factors that may affect the absorbed-dose response of dosimeters, such as temperature and moisture content in the food or agricultural products should be reported. The overall uncertainty in the absorbed-dose measurement and the inherent absorbed-dose range within the specimen should be taken into account in the design of an experiment. The guide covers research conducted using the following types of ionizing radiation: gamma rays, bremsstrahlung X-rays, and electron beams. This guide does not include other aspects of radiation processing research, such as planning of the experimental design. Dosimetry must be considered as an integral part of the experimental design. The guide does not include dosimetry for irradiator

Monte Carlo modelling of Germanium detectors for the measurement of low energy photons in internal dosimetry: Results of an international comparison

Energy Technology Data Exchange (ETDEWEB)

Gomez-Ros, J.M. [CIEMAT, Av. Complutense 22, E-28040 Madrid (Spain)], E-mail: jm.gomezros@ciemat.es; Carlan, L. de [CEA DRT/LIST/DETECS/LNHB/LMD, Bat 534, F-91191 Gif sur Yvette, Cedex (France); IRSN DRPH/SDI/LEDI, BP6, F-92262, Fontenay-aux-Roses, Cedex (France); Franck, D. [IRSN DRPH/SDI/LEDI, BP6, F-92262, Fontenay-aux-Roses, Cedex (France); Gualdrini, G. [ENEA ION-IRP, Via dei Colli 16, I-40136 Bologna (Italy); Lis, M.; Lopez, M.A.; Moraleda, M. [CIEMAT, Av. Complutense 22, E-28040 Madrid (Spain); Zankl, M. [GSF - National Research Center for Environment and Health, D-85764 Neuherberg (Germany); Badal, A. [Institut de Tecniques Energetiques, UPC, Diagonal 647, 08028 Barcelona (Spain); Capello, K. [Human Monitoring Laboratory (Canada); Cowan, P. [Serco Assurance, Bld. A32, Winfrith Tech. Centre Winfrith, Dorchester, Dorset DT2 8DH (United Kingdom); Ferrari, P. [ENEA ION-IRP, Via dei Colli 16, I-40136 Bologna (Italy); Heide, B. [Forschungszentrum Karlsruhe, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen (Germany); Henniger, J. [Technical University of Dresden, 01062 Dresden (Germany); Hooley, V. [Serco Assurance, Bld. A32, Winfrith Tech. Centre Winfrith, Dorchester, Dorset DT2 8DH (United Kingdom); Hunt, J. [IRD, Av. Salvador Allende, s/n, Recreio, Rio de Janeiro (Brazil); Kinase, S. [Japan Atomic Energy Agency, Tokai-mura, Naka-gun, Ibaraki-ken 319-1195 (Japan); Kramer, G.H. [Human Monitoring Laboratory (Canada); Loehnert, D. [Technical University of Dresden, 01062 Dresden (Germany); Lucas, S. [LARN Laboratory, University of Namur, Rue de Bruxelles 61, B-5000 Namur (Belgium)] (and others)

2008-02-15

This communication summarizes the results concerning the Monte Carlo (MC) modelling of Germanium detectors for the measurement of low energy photons arising from the 'International comparison on MC modelling for in vivo measurement of Americium in a knee phantom' organized within the EU Coordination Action CONRAD (Coordinated Network for Radiation Dosimetry) as a joint initiative of EURADOS working groups 6 (computational dosimetry) and 7 (internal dosimetry). MC simulations proved to be an applicable way to obtain the calibration factor that needs to be used for in vivo measurements.

A quantification of the effectiveness of EPID dosimetry and software-based plan verification systems in detecting incidents in radiotherapy

Energy Technology Data Exchange (ETDEWEB)

Bojechko, Casey; Phillps, Mark; Kalet, Alan; Ford, Eric C., E-mail: eford@uw.edu [Department of Radiation Oncology, University of Washington, 1959 N. E. Pacific Street, Seattle, Washington 98195 (United States)

2015-09-15

Purpose: Complex treatments in radiation therapy require robust verification in order to prevent errors that can adversely affect the patient. For this purpose, the authors estimate the effectiveness of detecting errors with a “defense in depth” system composed of electronic portal imaging device (EPID) based dosimetry and a software-based system composed of rules-based and Bayesian network verifications. Methods: The authors analyzed incidents with a high potential severity score, scored as a 3 or 4 on a 4 point scale, recorded in an in-house voluntary incident reporting system, collected from February 2012 to August 2014. The incidents were categorized into different failure modes. The detectability, defined as the number of incidents that are detectable divided total number of incidents, was calculated for each failure mode. Results: In total, 343 incidents were used in this study. Of the incidents 67% were related to photon external beam therapy (EBRT). The majority of the EBRT incidents were related to patient positioning and only a small number of these could be detected by EPID dosimetry when performed prior to treatment (6%). A large fraction could be detected by in vivo dosimetry performed during the first fraction (74%). Rules-based and Bayesian network verifications were found to be complimentary to EPID dosimetry, able to detect errors related to patient prescriptions and documentation, and errors unrelated to photon EBRT. Combining all of the verification steps together, 91% of all EBRT incidents could be detected. Conclusions: This study shows that the defense in depth system is potentially able to detect a large majority of incidents. The most effective EPID-based dosimetry verification is in vivo measurements during the first fraction and is complemented by rules-based and Bayesian network plan checking.

Proceedings of the III international workshop 'Actual problems of dosimetry (15 years after the Chernobyl accident)'

International Nuclear Information System (INIS)

Milyutin, A.A.; Chudakov, V.A.; Berezhnoj, A.V.

2001-10-01

Materials grouped to three main issues: normative, metrological and technical support of dosimetric and radiometric control; biological dosimetry and markers of radiation effects; monitoring and reconstruction of radiation doses at radiation accidents

In vitro dissolution and radiation dosimetry of metal tritides

International Nuclear Information System (INIS)

Cheng, Y.S.; Dahl, A.R.; Jow, H.N.

1993-01-01

It has been completed to investigate the dissolution behavior of both titanium and erbium tritide particles in simulated biological fluids and in rats. Data from these studies will provide information to estimate the dosimetry of inhaled metal tritides. The dosimetric model can then be used as the technical basis for setting health protection limits, including the annual limit on intake and the derived air concentration for DOE facilities. (3 figs.)

The biological response of plucked human hair to low-dose radiation: a measure of individual radiosensitivity and a technique for biological dosimetry

International Nuclear Information System (INIS)

Swain, D.

1997-01-01

It is often assumed that the effects of radiation are linear with dose and that high dose effects can be extrapolated to low dose levels. However, there are a variety of mechanisms which can alter the response at low doses. The most important of these relate to induced sensitivity or induced repair mechanisms. It is therefore important that this area is studied in more depth by looking at the molecular effects and damage to cells at low doses. It is well known that there are certain rare genetic syndromes which predispose individuals to cancer, e.g. ataxia telangiectasia. It is also probable that there is a large range of sensitivity in the natural variation of individuals to the risk of radiation-induced cancer. It is proposed that radiosensitivity is studied using stimulated lymphocytes from whole blood and the technique extended to look at the effects in cell cultures established from human hair. Radiation treatment of cell cultures established from plucked human hair has been previously advocated as a non-invasive technique for non-uniform biological dosimetry and it is proposed that these techniques are adapted to the use of hair to estimate individual radiosensitivity. The aim is to establish and optimize these techniques for culturing keratinocytes from plucked human hair follicles with a view to study biological markers for the subsequent assessment of radiosensitivity. Preliminary results are promising and suggest that the technique for culturing keratinocytes from hair presents a feasible approach. Results from this primary cell culture technique and results from the comparison of the micronuclei data obtained from the cell cultures and stimulated lymphocytes will be presented. (author)

Use of unstable chromosome aberrations for biological dosimetry after the first postirradiation mitosis

International Nuclear Information System (INIS)

Doloy, M.T.; Malarbet, J.L.; Guedeney, G.; Bourguignon, M.; Leroy, A.; Reillaudou, M.; Masse, R.

1991-01-01

The loss of unstable chromosome aberrations after the first postirradiation mitosis makes their use difficult in radiation dosimetry. We describe here a method which, in a cell population observed at this stage, allows retrospective estimation of the frequencies of the unstable aberrations induced at the time of irradiation, and their use as a dosimeter. The laws controlling the behavior of unstable aberrations during mitosis were defined from a large-scale experiment on irradiated human lymphocytes. For cells undergoing the first, second, or third mitosis after irradiation, relationships were determined between the frequency, at irradiation time, of acentric fragments not arising from formation of dicentrics or rings, and the ratio of dicentrics and centric rings appearing without acentric fragments to the total number of dicentrics plus rings. On the basis of this ratio, the method described here provides an assessment of the postirradiation mitotic activity in a cell population. This assessment permitted estimation of the cell distribution and frequency of dicentrics plus centric rings, and of the frequency of acentric fragments at the time of irradiation. The use of this method for retrospective dosimetry after whole-body irradiation under various conditions of exposure is illustrated

Novel recurrent neural network for modelling biological networks: oscillatory p53 interaction dynamics.

Science.gov (United States)

Ling, Hong; Samarasinghe, Sandhya; Kulasiri, Don

2013-12-01

Understanding the control of cellular networks consisting of gene and protein interactions and their emergent properties is a central activity of Systems Biology research. For this, continuous, discrete, hybrid, and stochastic methods have been proposed. Currently, the most common approach to modelling accurate temporal dynamics of networks is ordinary differential equations (ODE). However, critical limitations of ODE models are difficulty in kinetic parameter estimation and numerical solution of a large number of equations, making them more suited to smaller systems. In this article, we introduce a novel recurrent artificial neural network (RNN) that addresses above limitations and produces a continuous model that easily estimates parameters from data, can handle a large number of molecular interactions and quantifies temporal dynamics and emergent systems properties. This RNN is based on a system of ODEs representing molecular interactions in a signalling network. Each neuron represents concentration change of one molecule represented by an ODE. Weights of the RNN correspond to kinetic parameters in the system and can be adjusted incrementally during network training. The method is applied to the p53-Mdm2 oscillation system - a crucial component of the DNA damage response pathways activated by a damage signal. Simulation results indicate that the proposed RNN can successfully represent the behaviour of the p53-Mdm2 oscillation system and solve the parameter estimation problem with high accuracy. Furthermore, we presented a modified form of the RNN that estimates parameters and captures systems dynamics from sparse data collected over relatively large time steps. We also investigate the robustness of the p53-Mdm2 system using the trained RNN under various levels of parameter perturbation to gain a greater understanding of the control of the p53-Mdm2 system. Its outcomes on robustness are consistent with the current biological knowledge of this system. As more

Alanine EPR dosimetry of therapeutic irradiators

International Nuclear Information System (INIS)

Bugay, O.; Bartchuk, V.; Kolesnik, S.; Mazin, M.; Gaponenko, H.

1999-01-01

The high-dose alanine EPR dosimetry is a very precise method in the dose range 1-100 kGy. The system is used generally as the standard high-dose transfer dosimetry in many laboratories. This is comparatively expensive technique so it is important to use it as a more universal dosimetry system also in the middle and low dose ranges. The problems of the middle-dose alanine dosimetry are discussed and the solution of several problems is proposed. The alanine EPR dosimetry has been applied to the dose measurements of medical irradiators in the Kiev City Oncology Center. (author)

Retrospective dosimetry by electronic paramagnetic resonance (EPR) in dental enamel

International Nuclear Information System (INIS)

Dubner, D.; Gisone, P.; Perez, M.R.; Davila, F.A.; Boveris, A.; Puntarulo, S.

1998-01-01

Biophysical dosimetry based on EPR in biological solid samples (like bone and teeth) or in organic materials (like textile fibres, sugar, etc.) is a complementary technique that could contribute, along with the biological dosimetry, to the retrospective evaluation of the absorbed dose in accidental situations. Dental enamel could be considered as the only tissue with structure and composition essentially constant over time: this characteristic feature allows its use as an index of radiation exposure since tooth retains indefinitely its radiation history. Samples of human molars were exposed to gamma-Rays (Co 60) with doses between 0,5 Gy to 10 Gy. After a chemical treatment of samples, enamel was removed by grinding with a dental drill and reduced to a fine powder. A characteristic EPR signal was detected at g=2.002. The dose effect curves were done using 20 mw of microwave power. Measurements were done both, with flat cells and disposable Pasteur pipettes allowing the use of lower amounts of sample. The intensity of the signal was proportional to the dose and linearity was verified in both cases. We discuss the applicability of this technique in evaluating radiation dose in accidental overexposures. (author) [es

Evaluation of gene association methods for coexpression network construction and biological knowledge discovery.

Directory of Open Access Journals (Sweden)

Sapna Kumari

Full Text Available BACKGROUND: Constructing coexpression networks and performing network analysis using large-scale gene expression data sets is an effective way to uncover new biological knowledge; however, the methods used for gene association in constructing these coexpression networks have not been thoroughly evaluated. Since different methods lead to structurally different coexpression networks and provide different information, selecting the optimal gene association method is critical. METHODS AND RESULTS: In this study, we compared eight gene association methods - Spearman rank correlation, Weighted Rank Correlation, Kendall, Hoeffding's D measure, Theil-Sen, Rank Theil-Sen, Distance Covariance, and Pearson - and focused on their true knowledge discovery rates in associating pathway genes and construction coordination networks of regulatory genes. We also examined the behaviors of different methods to microarray data with different properties, and whether the biological processes affect the efficiency of different methods. CONCLUSIONS: We found that the Spearman, Hoeffding and Kendall methods are effective in identifying coexpressed pathway genes, whereas the Theil-sen, Rank Theil-Sen, Spearman, and Weighted Rank methods perform well in identifying coordinated transcription factors that control the same biological processes and traits. Surprisingly, the widely used Pearson method is generally less efficient, and so is the Distance Covariance method that can find gene pairs of multiple relationships. Some analyses we did clearly show Pearson and Distance Covariance methods have distinct behaviors as compared to all other six methods. The efficiencies of different methods vary with the data properties to some degree and are largely contingent upon the biological processes, which necessitates the pre-analysis to identify the best performing method for gene association and coexpression network construction.

The Utility of Lymphocyte Premature Chromosome Condensation Analysis for Biological Dosimetry Following Accidental Overexposure to Ionising Radiation

International Nuclear Information System (INIS)

Chambrette, V.; Laval, F.; Voisin, P.

1999-01-01

Premature chromosome condensation (PCC) appears to have a possible utility for biological dosimetry purposes. The PCC technique may be adapted for cases of suspicion of overexposure where sampling is performed at least one day after an accident. For this purpose, human blood samples were exposed in vitro to 60 Co (0.5 Gy.min -1 ) up to 4 Gy and the PCC technique was performed after 24 h, 48 h, and 72 h of DNA repair at 37 deg. C. Analysis of excess PCC fragments distribution showed an overdispersion and the dose-effect relationship was best characterised by linear regression. Radiation-induced damage was reduced to 32% between the first and the second day of repair and to 42% the following day. Statistical precision of the dose was found to be dependent on the irradiation dose and on the number of cells examined. The necessity to establish dose-response relationships after different periods of DNA repair is demonstrated, and the use of PCC excess fragments yield as a bioindicator should take this fact into account. (author)

Metabolism in tooth enamel and reliability of retrospective EPR dosimetry connected with Chernobyl accident

International Nuclear Information System (INIS)

Brik, A.; Radchuk, V.; Scherbina, O.; Matyash, M.; Gaver, O.

1996-01-01

It is shown that the results of retrospective EPR dosimetry by tooth enamel are essentially determined by the fact that tooth enamel is the mineral of biological origin. The structure of tooth enamel, properties of radiation defects and the role of metabolism in tooth enamel are discussed. It is shown that at deep metamorphic modifications tooth enamel don't save information about its radiation history. The reliability and accuracy of retrospective EPR dosimetry are discussed. Because after Chernobyl accident have passed 10 years the application of tooth enamel for reconstruction of doses which are connected with Chernobyl accident need care and additional investigations

PREFACE: Complex Networks: from Biology to Information Technology

Science.gov (United States)

Barrat, A.; Boccaletti, S.; Caldarelli, G.; Chessa, A.; Latora, V.; Motter, A. E.

2008-06-01

The field of complex networks is one of the most active areas in contemporary statistical physics. Ten years after seminal work initiated the modern study of networks, interest in the field is in fact still growing, as indicated by the ever increasing number of publications in network science. The reason for such a resounding success is most likely the simplicity and broad significance of the approach that, through graph theory, allows researchers to address a variety of different complex systems within a common framework. This special issue comprises a selection of contributions presented at the workshop 'Complex Networks: from Biology to Information Technology' held in July 2007 in Pula (Cagliari), Italy as a satellite of the general conference STATPHYS23. The contributions cover a wide range of problems that are currently among the most important questions in the area of complex networks and that are likely to stimulate future research. The issue is organised into four sections. The first two sections describe 'methods' to study the structure and the dynamics of complex networks, respectively. After this methodological part, the issue proceeds with a section on applications to biological systems. The issue closes with a section concentrating on applications to the study of social and technological networks. The first section, entitled Methods: The Structure, consists of six contributions focused on the characterisation and analysis of structural properties of complex networks: The paper Motif-based communities in complex networks by Arenas et al is a study of the occurrence of characteristic small subgraphs in complex networks. These subgraphs, known as motifs, are used to define general classes of nodes and their communities by extending the mathematical expression of the Newman-Girvan modularity. The same line of research, aimed at characterising network structure through the analysis of particular subgraphs, is explored by Bianconi and Gulbahce in Algorithm

In Vitro Exposure Systems and Dosimetry Assessment Tools ...

Science.gov (United States)

In 2009, the passing of The Family Smoking Prevention and Tobacco Control Act facilitated the establishment of the FDA Center for Tobacco Products (CTP) and gave it regulatory authority over the marketing, manufacture and distribution of tobacco products, including those termed “modified risk”. On 4-6 April 2016, the Institute for In Vitro Sciences, Inc. (IIVS) convened a workshop conference titled “In Vitro Exposure Systems and Dosimetry Assessment Tools for Inhaled Tobacco Products” to bring together stakeholders representing regulatory agencies, academia, and industry to address the research priorities articulated by the FDA CTP. Specific topics were covered to assess the status of current in vitro smoke and aerosol/vapor exposure systems, as well as the various approaches and challenges to quantifying the complex exposures, in in vitro pulmonary models developed for evaluating adverse pulmonary events resulting from tobacco product exposures. The four core topics covered were, 1) Tobacco Smoke And E-Cigarette Aerosols, 2) Air-Liquid Interface-In Vitro Exposure Systems, 3) Dosimetry Approaches For Particles And Vapors; In Vitro Dosimetry Determinations and 4) Exposure Microenvironment/Physiology Of Cells. The two and a half day workshop included presentations from 20 expert speakers, poster sessions, networking discussions, and breakout sessions which identified key findings and provided recommendations to advance these technologies. Here, we will re

Scientific committee of the IAEA/WHO Network of Secondary Standard Dosimetry Laboratories. Report of the ninth meeting of the SSDL scientific committee, IAEA, Vienna, 13-17 November 2000

International Nuclear Information System (INIS)

2001-01-01

The report of the eighth meeting (held in Oct. 1998) of the Scientific Committee (SSC) of the IAEA/WHO network of Secondary Standard Dosimetry Laboratories (SSDL) was published in the SSDL Newsletter No. 40, January 1999. The ninth meeting was held in Vienna at Agency Headquarters from 13 to 17 November 2000. Opening remarks were made by Mr. S. Groth, Director, Division of Human Health (NAHU), Mr. H. Oestensen (WHO), Co-Secretary of the IAEA/WHO SSDL Network, and Mr. Ahmed Meghzifene, acting Section Head, Dosimetry and Medical Radiation Physics (DMRP). The Agency's DMRP sub-programme provides traceable radiation standards to the majority of developing countries over a wide range of energies and dose levels. External-beam radiation therapy and radiation processing (high dose) have a long history and robust links to international standards. Recently the DMRP has developed projects providing robust links for calibration of mammography X-ray beams, brachytherapy sources, and personnel monitoring programmes at the participating SSDLs. Efforts by the Agency and the WHO over the past 5 years have made significant improvements in the return rate and turn-around time in the postal TLD programme, effectively increasing the availability of Agency standards. Two other high-priority items promulgated by the DMRP are: (i) follow-up of quality audit measurements which fall outside the established action levels, and (ii) transfer of postal TLD programmes to national programmes and establishing and maintaining links between these programmes and the DMRP. The SSC still considers both of these as high priority items, commends the DMRP on their efforts, and encourages them to continue to develop activities in these areas. The SSC wishes to emphasize that radiation dosimetry is a necessary adjunct to many programmes that utilize ionizing radiation at various dose levels. The SSC commends the Agency for their continued support for the programmes sponsored through the Dosimetry and

Comparison of Real-Time Intraoperative Ultrasound-Based Dosimetry With Postoperative Computed Tomography-Based Dosimetry for Prostate Brachytherapy

International Nuclear Information System (INIS)

Nag, Subir; Shi Peipei; Liu Bingren; Gupta, Nilendu; Bahnson, Robert R.; Wang, Jian Z.

2008-01-01

Purpose: To evaluate whether real-time intraoperative ultrasound (US)-based dosimetry can replace conventional postoperative computed tomography (CT)-based dosimetry in prostate brachytherapy. Methods and Materials: Between December 2001 and November 2002, 82 patients underwent 103 Pd prostate brachytherapy. An interplant treatment planning system was used for real-time intraoperative transrectal US-guided treatment planning. The dose distribution was updated according to the estimated seed position to obtain the dose-volume histograms. Postoperative CT-based dosimetry was performed a few hours later using the Theraplan-Plus treatment planning system. The dosimetric parameters obtained from the two imaging modalities were compared. Results: The results of this study revealed correlations between the US- and CT-based dosimetry. However, large variations were found in the implant-quality parameters of the two modalities, including the doses covering 100%, 90%, and 80% of the prostate volume and prostate volumes covered by 100%, 150%, and 200% of the prescription dose. The mean relative difference was 38% and 16% for doses covering 100% and 90% of the prostate volume and 10% and 21% for prostate volumes covered by 100% and 150% of the prescription dose, respectively. The CT-based volume covered by 200% of the prescription dose was about 30% greater than the US-based one. Compared with CT-based dosimetry, US-based dosimetry significantly underestimated the dose to normal organs, especially for the rectum. The average US-based maximal dose and volume covered by 100% of the prescription dose for the rectum was 72 Gy and 0.01 cm 3 , respectively, much lower than the 159 Gy and 0.65 cm 3 obtained using CT-based dosimetry. Conclusion: Although dosimetry using intraoperative US-based planning provides preliminary real-time information, it does not accurately reflect the postoperative CT-based dosimetry. Until studies have determined whether US-based dosimetry or

Dosimetry for radiation processing

International Nuclear Information System (INIS)

Miller, Arne

1986-01-01

During the past few years significant advances have taken place in the different areas of dosimetry for radiation processing, mainly stimulated by the increased interest in radiation for food preservation, plastic processing and sterilization of medical products. Reference services both by international organizations (IAEA) and national laboratories have helped to improve the reliability of dose measurements. In this paper the special features of radiation processing dosimetry are discussed, several commonly used dosimeters are reviewed, and factors leading to traceable and reliable dosimetry are discussed. (author)

Radiochromic film dosimetry

International Nuclear Information System (INIS)

Xu Zhiyong

2002-01-01

Radiochromic film dosimetry was developed to measure ionization irradiation dose for industry and medicine. At this time, there are no comprehensive guideline on the medical application, calibration method and densitometer system for medicine. The review gives update on Radiochromic film dosimetry used for medicine, including principles, film model and material, characteristics, calibration method, scanning densitometer system and medical application

Study and development of radiothermoluminescent dosimetry

International Nuclear Information System (INIS)

Portal, Guy.

1978-11-01

After briefly reviewing bibliography concerning the mechanism of radiothermoluminescence and its use in dosimetry, we have concentrated on studies of three thermoluminescent products: magnesium activated lithium fluoride, alumina and calcium sulfate activated with either dysprosium or thulium. In particular, the preparation and singular properties of a new type of lithium fluoride stabilised with sodium, created especially for dosimetric purposes, is described. The physical characteristics of these three products, their emission spectra and their trap parameters, have been studied and we have analysed, both theoretically and experimentally, their dosimetric properties, paying particular attention to their relative chromatic sensitivity to photons and neutrons. It is shown that alumina exhibits an exceptional neutron thermoluminescent yield which points to a potential interest in this material which is little used to date. The deep trapping levels of these products have been studied and some levels found appearing at temperatures above 600 0 C: these can be used for radiation dosimetry in enclosures at temperatures between 400 and 450 0 C. Finally, a brief outline of radiothermoluminescent applications of these products in the radioprotection, medical, biological, archeological and industrial fields is presented [fr

11. International conference on solid radiation dosimetry

International Nuclear Information System (INIS)

Krylova, I.V.

1996-01-01

The main problems discussed during the international conference on solid radiation dosimetry which took place in June 1995 in Budapest are briefly considered. These are the basic physical processes, materials applied for dosimetry, special techniques, personnel monitoring, monitoring of environmental effects, large-dose dosimetry, clinic dosimetry, track detector used for dosimetry, dosimetry in archaeology and geology, equipment and technique for dosimetric measurements. The special attention was paid to superlinearity in the TLD-100 (LiF, Mg, Ti) response function when determining doses of gamma radiation, heavy charged particles, low-energy particle fluxes in particular. New theoretical models were considered

A microcomputer controlled thermoluminescence dosimetry system

International Nuclear Information System (INIS)

Huyskens, C.J.; Kicken, P.J.H.

1980-01-01

Using a microcomputer, an automatic thermoluminescence dosimetry system for personal dosimetry and thermoluminescence detector (TLD) research was developed. Process automation, statistical computation and dose calculation are provided by this microcomputer. Recording of measurement data, as well as dose record keeping for radiological workers is carried out with floppy disk. The microcomputer also provides a human/system interface by means of a video display and a printer. The main features of this dosimetry system are its low cost, high degree of flexibility, high degree of automation and the feasibility for use in routine dosimetry as well as in TLD research. The system is in use for personal dosimetry, environmental dosimetry and for TL-research work. Because of its modular set-up several components of the system are in use for other applications, too. The system seems suited for medium sized health physics groups. (author)

Content-rich biological network constructed by mining PubMed abstracts

Directory of Open Access Journals (Sweden)

Sharp Burt M

2004-10-01

Full Text Available Abstract Background The integration of the rapidly expanding corpus of information about the genome, transcriptome, and proteome, engendered by powerful technological advances, such as microarrays, and the availability of genomic sequence from multiple species, challenges the grasp and comprehension of the scientific community. Despite the existence of text-mining methods that identify biological relationships based on the textual co-occurrence of gene/protein terms or similarities in abstract texts, knowledge of the underlying molecular connections on a large scale, which is prerequisite to understanding novel biological processes, lags far behind the accumulation of data. While computationally efficient, the co-occurrence-based approaches fail to characterize (e.g., inhibition or stimulation, directionality biological interactions. Programs with natural language processing (NLP capability have been created to address these limitations, however, they are in general not readily accessible to the public. Results We present a NLP-based text-mining approach, Chilibot, which constructs content-rich relationship networks among biological concepts, genes, proteins, or drugs. Amongst its features, suggestions for new hypotheses can be generated. Lastly, we provide evidence that the connectivity of molecular networks extracted from the biological literature follows the power-law distribution, indicating scale-free topologies consistent with the results of previous experimental analyses. Conclusions Chilibot distills scientific relationships from knowledge available throughout a wide range of biological domains and presents these in a content-rich graphical format, thus integrating general biomedical knowledge with the specialized knowledge and interests of the user. Chilibot http://www.chilibot.net can be accessed free of charge to academic users.

A biological network-based regularized artificial neural network model for robust phenotype prediction from gene expression data.

Science.gov (United States)

Kang, Tianyu; Ding, Wei; Zhang, Luoyan; Ziemek, Daniel; Zarringhalam, Kourosh

2017-12-19

Stratification of patient subpopulations that respond favorably to treatment or experience and adverse reaction is an essential step toward development of new personalized therapies and diagnostics. It is currently feasible to generate omic-scale biological measurements for all patients in a study, providing an opportunity for machine learning models to identify molecular markers for disease diagnosis and progression. However, the high variability of genetic background in human populations hampers the reproducibility of omic-scale markers. In this paper, we develop a biological network-based regularized artificial neural network model for prediction of phenotype from transcriptomic measurements in clinical trials. To improve model sparsity and the overall reproducibility of the model, we incorporate regularization for simultaneous shrinkage of gene sets based on active upstream regulatory mechanisms into the model. We benchmark our method against various regression, support vector machines and artificial neural network models and demonstrate the ability of our method in predicting the clinical outcomes using clinical trial data on acute rejection in kidney transplantation and response to Infliximab in ulcerative colitis. We show that integration of prior biological knowledge into the classification as developed in this paper, significantly improves the robustness and generalizability of predictions to independent datasets. We provide a Java code of our algorithm along with a parsed version of the STRING DB database. In summary, we present a method for prediction of clinical phenotypes using baseline genome-wide expression data that makes use of prior biological knowledge on gene-regulatory interactions in order to increase robustness and reproducibility of omic-scale markers. The integrated group-wise regularization methods increases the interpretability of biological signatures and gives stable performance estimates across independent test sets.

MicroRNA functional network in pancreatic cancer: From biology to ...

Indian Academy of Sciences (India)

[Wang J and Sen S 2011 MicroRNA functional network in pancreatic cancer: From biology to biomarkers of disease. ... growth factor type I receptor; INSR, insulin receptor; IPA, Ingenuity Pathway Analysis; IPMN, ..... Prostate cancer signalling.

Characterising an aluminium oxide dosimetry system.

Science.gov (United States)

Conheady, Clement F; Gagliardi, Frank M; Ackerly, Trevor

2015-09-01

In vivo dosimetry is recommended as a defence-in-depth strategy in radiotherapy treatments and is currently employed by clinics around the world. The characteristics of a new optically stimulated luminescence dosimetry system were investigated for the purpose of replacing an aging thermoluminescence dosimetry system for in vivo dosimetry. The stability of the system was not sufficient to satisfy commissioning requirements and therefore it has not been released into clinical service at this time.

The impact of network biology in pharmacology and toxicology

DEFF Research Database (Denmark)

Panagiotou, Gianni; Taboureau, Olivier

2012-01-01

With the need to investigate alternative approaches and emerging technologies in order to increase drug efficacy and reduce adverse drug effects, network biology offers a novel way of approaching drug discovery by considering the effect of a molecule and protein's function in a global physiological...... and tools that allow integration and analysis of such information for understanding the properties of small molecules in the context of cellular networks. With the recent advances in the omics area, global integrative approaches are necessary to cope with the massive amounts of data, and biomedical...

Biological network extraction from scientific literature: state of the art and challenges.

Science.gov (United States)

Li, Chen; Liakata, Maria; Rebholz-Schuhmann, Dietrich

2014-09-01

Networks of molecular interactions explain complex biological processes, and all known information on molecular events is contained in a number of public repositories including the scientific literature. Metabolic and signalling pathways are often viewed separately, even though both types are composed of interactions involving proteins and other chemical entities. It is necessary to be able to combine data from all available resources to judge the functionality, complexity and completeness of any given network overall, but especially the full integration of relevant information from the scientific literature is still an ongoing and complex task. Currently, the text-mining research community is steadily moving towards processing the full body of the scientific literature by making use of rich linguistic features such as full text parsing, to extract biological interactions. The next step will be to combine these with information from scientific databases to support hypothesis generation for the discovery of new knowledge and the extension of biological networks. The generation of comprehensive networks requires technologies such as entity grounding, coordination resolution and co-reference resolution, which are not fully solved and are required to further improve the quality of results. Here, we analyse the state of the art for the extraction of network information from the scientific literature and the evaluation of extraction methods against reference corpora, discuss challenges involved and identify directions for future research. © The Author 2013. Published by Oxford University Press. For Permissions, please email: journals.permissions@oup.com.

Cytogenetic Dosimetry: Applications in Preparedness for and Response to Radiation Emergencies - Training Materials

International Nuclear Information System (INIS)

2013-01-01

These materials are designed for use at a four day training course on the application of cytogenetic dosimetry in preparedness for and response to radiation emergencies. They contain information on: (1) Basics of biological effects of ionizing radiation: Parts 1+2; (2) Basics of dosimetry; (3) dicentric assay; (4) Retrospective dosimetry by translocation analysis; (5) Premature chromosome condensation analysis; (6) Cytokinesis block micronucleus assay; (7) Applied statistics for biodosimetry; (8) Automatic analysis of chromosomal assays; (9) Biodosimetry in mass casualty events; (10) Safety of laboratory staff and quality programmes; (11) Examples of accident investigations; (12) Cytogenetic dose estimation in the criticality accident in Tokaimura; (13) Radiological accidents in Latin America; (14) Radiological accidents in Georgia. Additionally, the CD contains two working sessions with the reference materials for use and a standard training programme. This training course consists of lectures and work sessions that can easily be utilized by a State to build a basic capability in biodosimetry application in a nuclear or radiological emergency

Integrated analysis of multiple data sources reveals modular structure of biological networks

International Nuclear Information System (INIS)

Lu Hongchao; Shi Baochen; Wu Gaowei; Zhang Yong; Zhu Xiaopeng; Zhang Zhihua; Liu Changning; Zhao, Yi; Wu Tao; Wang Jie; Chen Runsheng

2006-01-01

It has been a challenging task to integrate high-throughput data into investigations of the systematic and dynamic organization of biological networks. Here, we presented a simple hierarchical clustering algorithm that goes a long way to achieve this aim. Our method effectively reveals the modular structure of the yeast protein-protein interaction network and distinguishes protein complexes from functional modules by integrating high-throughput protein-protein interaction data with the added subcellular localization and expression profile data. Furthermore, we take advantage of the detected modules to provide a reliably functional context for the uncharacterized components within modules. On the other hand, the integration of various protein-protein association information makes our method robust to false-positives, especially for derived protein complexes. More importantly, this simple method can be extended naturally to other types of data fusion and provides a framework for the study of more comprehensive properties of the biological network and other forms of complex networks