Terrestrial biogeochemistry in the community climate system model (CCSM)

Energy Technology Data Exchange (ETDEWEB)

Hoffman, Forrest [Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6016 (United States); Fung, Inez [University of California at Berkeley, Berkeley, California (United States); Randerson, Jim [University of California at Irvine, Irvine, California (United States); Thornton, Peter [National Center for Atmospheric Research, Boulder, Colorado (United States); Foley, Jon [University of Wisconsin at Madison, Madison, Wisconsin (United States); Covey, Curtis [Program for Climate Model Diagnosis and Intercomparison, Lawrence Livermore National Laboratory, Livermore, California (United States); John, Jasmin [University of California at Berkeley, Berkeley, California (United States); Levis, Samuel [National Center for Atmospheric Research, Boulder, Colorado (United States); Post, W Mac [Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6016 (United States); Vertenstein, Mariana [National Center for Atmospheric Research, Boulder, Colorado (United States); Stoeckli, Reto [Colorado State University, Ft. Collins, Colorado (United States); Running, Steve [University of Montana, Missoula, Montana (United States); Heinsch, Faith Ann [University of Montana, Missoula, Montana (United States); Erickson, David [Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6016 (United States); Drake, John [Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6016 (United States)

2006-09-15

Described here is the formulation of the CASA{sup '} biogeochemistry model of Fung, et al., which has recently been coupled to the Community Land Model Version 3 (CLM3) and the Community Climate System Model Version 3 (CCSM3). This model is presently being used for Coupled Climate/Carbon Cycle Model Intercomparison Project (C{sup 4}MIP) Phase 1 experiments. In addition, CASA{sup '} is one of three models - in addition to CN (Thornton, et al.) and IBIS (Thompson, et al.) - that are being run within CCSM to investigate their suitability for use in climate change predictions in a future version of CCSM. All of these biogeochemistry experiments are being performed on the Computational Climate Science End Station (Dr. Warren Washington, Principle Investigator) at the National Center for Computational Sciences at Oak Ridge National Laboratory.

Rethinking Sediment Biogeochemistry After the Discovery of Electric Currents

DEFF Research Database (Denmark)

Nielsen, Lars Peter; Risgaard-Petersen, Nils

2015-01-01

The discovery of electric currents in marine sediments arose from a simple observation that conventional biogeochemistry could not explain: Sulfide oxidation in one place is closely coupled to oxygen reduction in another place, centimeters away. After experiments demonstrated that this resulted...

Manganese Biogeochemistry in a Central Czech Republic Catchment

Czech Academy of Sciences Publication Activity Database

Navrátil, Tomáš; Shanley, J. B.; Krám, P.; Mihaljevič, M.; Drahota, Petr

2007-01-01

Roč. 186, 1-4 (2007), s. 149-165 ISSN 0049-6979 R&D Projects: GA ČR GA205/04/0060 Institutional research plan: CEZ:AV0Z30130516 Keywords : manganese * catchment * weathering * biogeochemistry * biotite weathering * forest ecosystem * mass balance Subject RIV: DD - Geochemistry Impact factor: 1.224, year: 2007

Thresholds in Xeric Hydrology and Biogeochemistry

Science.gov (United States)

Meixner, T.; Brooks, P. D.; Simpson, S. C.; Soto, C. D.; Yuan, F.; Turner, D.; Richter, H.

2011-12-01

Due to water limitation, thresholds in hydrologic and biogeochemical processes are common in arid and semi-arid systems. Some of these thresholds such as those focused on rainfall runoff relationships have been well studied. However to gain a full picture of the role that thresholds play in driving the hydrology and biogeochemistry of xeric systems a full view of the entire array of processes at work is needed. Here a walk through the landscape of xeric systems will be conducted illustrating the powerful role of hydrologic thresholds on xeric system biogeochemistry. To understand xeric hydro-biogeochemistry two key ideas need to be focused on. First, it is important to start from a framework of reaction and transport. Second an understanding of the temporal and spatial components of thresholds that have a large impact on hydrologic and biogeochemical fluxes needs to be offered. In the uplands themselves episodic rewetting and drying of soils permits accelerated biogeochemical processing but also more gradual drainage of water through the subsurface than expected in simple conceptions of biogeochemical processes. Hydrologic thresholds (water content above hygroscopic) results in a stop start nutrient spiral of material across the landscape since runoff connecting uplands to xeric perennial riparian is episodic and often only transports materials a short distance (100's of m). This episodic movement results in important and counter-intuitive nutrient inputs to riparian zones but also significant processing and uptake of nutrients. The floods that transport these biogeochemicals also result in significant input to riparian groundwater and may be key to sustaining these critical ecosystems. Importantly the flood driven recharge process itself is a threshold process dependent on flood characteristics (floods greater than 100 cubic meters per second) and antecedent conditions (losing to near neutral gradients). Floods also appear to influence where arid and semi

Chapter 2: Sampling strategies in forest hydrology and biogeochemistry

Science.gov (United States)

Roger C. Bales; Martha H. Conklin; Branko Kerkez; Steven Glaser; Jan W. Hopmans; Carolyn T. Hunsaker; Matt Meadows; Peter C. Hartsough

2011-01-01

Many aspects of forest hydrology have been based on accurate but not necessarily spatially representative measurements, reflecting the measurement capabilities that were traditionally available. Two developments are bringing about fundamental changes in sampling strategies in forest hydrology and biogeochemistry: (a) technical advances in measurement capability, as is...

Application of Synchrotron Radiation-based Methods for Environmental Biogeochemistry: Introduction to the Special Section

Energy Technology Data Exchange (ETDEWEB)

Hettiarachchi, Ganga M.; Donner, Erica; Doelsch, Emmanuel

2017-01-01

To understand the biogeochemistry of nutrients and contaminants in environmental media, their speciation and behavior under different conditions and at multiple scales must be determined. Synchrotron radiation-based X-ray techniques allow scientists to elucidate the underlying mechanisms responsible for nutrient and contaminant mobility, bioavailability, and behavior. The continuous improvement of synchrotron light sources and X-ray beamlines around the world has led to a profound transformation in the field of environmental biogeochemistry and, subsequently, to significant scientific breakthroughs. Following this introductory paper, this special collection includes 10 papers that either present targeted reviews of recent advancements in spectroscopic methods that are applicable to environmental biogeochemistry or describe original research studies conducted on complex environmental samples that have been significantly enhanced by incorporating synchrotron radiation-based X-ray technique(s). We believe that the current focus on improving the speciation of ultra-dilute elements in environmental media through the ongoing optimization of synchrotron technologies (e.g., brighter light sources, improved monochromators, more efficient detectors) will help to significantly push back the frontiers of environmental biogeochemistry research. As many of the relevant techniques produce extremely large datasets, we also identify ongoing improvements in data processing and analysis (e.g., software improvements and harmonization of analytical methods) as a significant requirement for environmental biogeochemists to maximize the information that can be gained using these powerful tools.

Dynamic Biological Functioning Important for Simulating and Stabilizing Ocean Biogeochemistry

Science.gov (United States)

Buchanan, P. J.; Matear, R. J.; Chase, Z.; Phipps, S. J.; Bindoff, N. L.

2018-04-01

The biogeochemistry of the ocean exerts a strong influence on the climate by modulating atmospheric greenhouse gases. In turn, ocean biogeochemistry depends on numerous physical and biological processes that change over space and time. Accurately simulating these processes is fundamental for accurately simulating the ocean's role within the climate. However, our simulation of these processes is often simplistic, despite a growing understanding of underlying biological dynamics. Here we explore how new parameterizations of biological processes affect simulated biogeochemical properties in a global ocean model. We combine 6 different physical realizations with 6 different biogeochemical parameterizations (36 unique ocean states). The biogeochemical parameterizations, all previously published, aim to more accurately represent the response of ocean biology to changing physical conditions. We make three major findings. First, oxygen, carbon, alkalinity, and phosphate fields are more sensitive to changes in the ocean's physical state. Only nitrate is more sensitive to changes in biological processes, and we suggest that assessment protocols for ocean biogeochemical models formally include the marine nitrogen cycle to assess their performance. Second, we show that dynamic variations in the production, remineralization, and stoichiometry of organic matter in response to changing environmental conditions benefit the simulation of ocean biogeochemistry. Third, dynamic biological functioning reduces the sensitivity of biogeochemical properties to physical change. Carbon and nitrogen inventories were 50% and 20% less sensitive to physical changes, respectively, in simulations that incorporated dynamic biological functioning. These results highlight the importance of a dynamic biology for ocean properties and climate.

The metal-driven biogeochemistry of gaseous compounds in the environment

CERN Document Server

Kroneck, Peter MH

2014-01-01

MILS-14 provides a most up-to-date view of the exciting biogeochemistry of gases in our environment as driven mostly by microorganisms. These employ a machinery of sophisticated metalloenzymes, where especially transition metals (such as Fe, Ni, Cu, Mo, W) play a fundamental role, that is, in the activation, transformation and syntheses of gases like dihydrogen, methane, carbon monoxide, acetylene and those of the biological nitrogen and sulfur cycles. The Metal-Driven Biogeochemistry of Gaseous Compounds in the Environment is a vibrant research area based mainly on structural and microbial biology, inorganic biological chemistry and environmental biochemistry. All this is covered in an authoritative manner in 11 stimulating chapters, written by 26 internationally recognized experts and supported by nearly 1200 references, informative tables and about 100 illustrations (two thirds in color). MILS-14 also provides excellent information for teaching. Peter M. H. Kroneck is a bioinorganic chemist who is explorin...

Sediment biogeochemistry in an East African mangrove forest (Gazi Bay, Kenya)

NARCIS (Netherlands)

Middelburg, J.J.; Nieuwenhuize, J.; Slim, F.J.; Ohowa, B.

1996-01-01

The biogeochemistry of mangrove sediments was investigated in several mangrove forest communities in Gazi Bay, a coastal lagoon in Kenya, Africa. Carbon dioxide fluxes, sediment median grain sizes, sedimentary organic carbon, nitrogen and phosphorus contents and pore-water characteristics (ammonium,

The influence of Indian Ocean Dipole (IOD) on biogeochemistry of ...

Indian Academy of Sciences (India)

Positive SST anomalies (SSTA) were found in the Arabian Sea (0.4 to 1.8 ... Keywords. Indian Ocean Dipole; biogeochemistry; carbon; chlorophyll; Arabian Sea; models. ... mainly control the strength of this source (Sarma ... of the CO2 evasion at the air–water interface (70 ..... tive SSHA due to asymmetric effect of upwelling.

The importance of shallow hydrothermal island arc systems in ocean biogeochemistry

NARCIS (Netherlands)

Hawkes, J.A.; Connelly, D.P.; Rijkenberg, M.J.A.; Achterberg, E.P.

2014-01-01

Hydrothermal venting often occurs at submarine volcanic calderas on island arc chains, typically at shallower depths than mid-ocean ridges. The effect of these systems on ocean biogeochemistry has been under-investigated to date. Here we show that hydrothermal effluent from an island arc caldera was

Biogeochemistry Science and Education Part One: Using Non-Traditional Stable Isotopes as Environmental Tracers Part Two: Identifying and Measuring Undergraduate Misconceptions in Biogeochemistry

Science.gov (United States)

Mead, Chris

This dissertation is presented in two sections. First, I explore two methods of using stable isotope analysis to trace environmental and biogeochemical processes. Second, I present two related studies investigating student understanding of the biogeochemical concepts that underlie part one. Fe and Hg are each biogeochemically important elements in their own way. Fe is a critical nutrient for phytoplankton, while Hg is detrimental to nearly all forms of life. Fe is often a limiting factor in marine phytoplankton growth. The largest source, by mass, of Fe to the open ocean is windblown mineral dust, but other more soluble sources are more bioavailable. To look for evidence of these non-soil dust sources of Fe to the open ocean, I measured the isotopic composition of aerosol samples collected on Bermuda. I found clear evidence in the fine size fraction of a non-soil dust Fe source, which I conclude is most likely from biomass burning. Widespread adoption of compact fluorescent lamps (CFL) has increased their importance as a source of environmental Hg. Isotope analysis would be a useful tool in quantifying this impact if the isotopic composition of Hg from CFL were known. My measurements show that CFL-Hg is isotopically fractionated, in a unique pattern, during normal operation. This fractionation is large and has a distinctive, mass-independent signature, such that CFL Hg can be uniquely identified from other sources. Misconceptions research in geology has been a very active area of research, but student thinking regarding the related field of biogeochemistry has not yet been studied in detail. From interviews with 40 undergraduates, I identified over 150 specific misconceptions. I also designed a multiple-choice survey (concept inventory) to measure understanding of these same biogeochemistry concepts. I present statistical evidence, based on the Rasch model, for the reliability and validity of this instrument. This instrument will allow teachers and researchers to

Salt additions increase soil nitrate leaching: Implications for near-coastal watershed biogeochemistry

Science.gov (United States)

Deposition of sea salt aerosols is often elevated along the coast relative to inland areas, yet little is known about the effects of this deposition on terrestrial ecosystem biogeochemistry. Spatial patterns of stream chemistry in the Oregon Coast Range led us to hypothesize tha...

Peatland Open-water Pool Biogeochemistry: The Influence of Hydrology and Vegetation

Science.gov (United States)

Arsenault, J.; Talbot, J.; Moore, T. R.

2017-12-01

Peatland open-water pools are net sources of carbon to the atmosphere. However, their interaction with the surrounding peat remains poorly known. In a previous study, we showed that shallow pools are richer in nutrients than deep pools. While depth was the main driver of biogeochemistry variations across time and space, analyses also showed that pool's adjacent vegetation may have an influence on water chemistry. Our goal is to understand the relationship between the biogeochemistry of open-water pools and their surroundings in a subboreal ombrotrophic peatland of southern Quebec (Canada). To assess the influence of vegetation on pool water chemistry, we compare two areas covered with different types of vegetation: a forested zone dominated by spruce trees and an open area mostly covered by Sphagnum spp. To evaluate the direction of water (in or out of the pools), we installed capacitance water level probes in transects linking pools in the two zones. Wells were also installed next to each probe to collect peat pore water samples. Samples were taken every month during summer 2017 and analyzed for dissolved organic carbon, nitrogen and phosphorus, pH and specific UV absorbance. Preliminary results show differences in peat water chemistry depending on the dominant vegetation. In both zones, water levels fluctuations are disconnected between peat and the pools, suggesting poor horizontal water movement. Pool water chemistry may be mostly influenced by the immediate surrounding vegetation than by the local vegetation pattern. Climate and land-use change may affect the vegetation structure of peatlands, thus affecting pool biogeochemistry. Considering the impact of pools on the overall peatland capacity to accumulate carbon, our results show that more focus must be placed on pools to better understand peatland stability over time.

Plant Biology and Biogeochemistry Department annual report 2000

DEFF Research Database (Denmark)

Kossmann, J.; Gissel Nielsen, G.; Nielsen, K.K.

2001-01-01

The Department of Plant Biology and Biogeochemistry is engaged in basic and applied research to improve the scientific basis for developing new methods and technology for an environmentally benign industrial and agricultural production in the future. TheDepartment's expertise covers a wide range...... of areas needed to develop crops that meet the demands to increase agricultural production for a growing population, to produce plants with improved nutritional value, to develop crops that deliver renewableresources to the industry, and to generate plants that are adapted to the future climate...

Effects of atmospheric inorganic nitrogen deposition on ocean biogeochemistry

OpenAIRE

Krishnamurthy, Aparna; Moore, J. Keith; Zender, Charles S; Luo, Chao

2007-01-01

 We perform a sensitivity study with the Biogeochemical Elemental Cycling (BEC) ocean model to understand the impact of atmospheric inorganic nitrogen deposition on marine biogeochemistry and air-sea CO2 exchange. Simulations involved examining the response to three different atmospheric inorganic nitrogen deposition scenarios namely, Pre-industrial (22 Tg N/year), 1990s (39 Tg N/year), and an Intergovernmental Panel on Climate Change (IPCC) prediction for 2100, IPCC-A1FI (69 Tg N/year). Glob...

Tenth international symposium on environmental biogeochemistry. Final technical report, December 15, 1990--December 14, 1991

Energy Technology Data Exchange (ETDEWEB)

Ehrlich, H.L.

1992-01-01

The primary task of this Symposium on Environmental Biogeochemistry was to examine our current understanding of GLOBAL CHANGE AND THE BIOGEOCHEMISTRY OF RADIATIVE TRACE GASES. The symposium was divided into 12 non-overlapping sessions: Paleoatmospheres and paleoclimates; Global distributions and atmospheric reactions; Poster presentations on the topics of sessions 1, 2, 4, 5, and 7; Terrestrial systems and land use change - 1; Terrestrial and land use change - 11; Fluxes and cycling in aquatic systems; Metals, organics, and depositional environments; Poster presentations on the topics of sessions 6, 9, 10 and 12; Biological Mechanisms of formation and destruction - 1; Biological mechanisms of formation and destruction - 11; High latitude systems; and Global sources, sinks, and feedbacks.

Pilot Study on Potential Impacts of Fisheries-Induced Changes in Zooplankton Mortality on Marine Biogeochemistry

Science.gov (United States)

Getzlaff, Julia; Oschlies, Andreas

2017-11-01

In this pilot study we link the yield of industrial fisheries to changes in the zooplankton mortality in an idealized way accounting for different target species (planktivorous fish—decreased zooplankton mortality; large predators—increased zooplankton mortality). This indirect approach is used in a global coupled biogeochemistry circulation model to estimate the range of the potential impact of industrial fisheries on marine biogeochemistry. The simulated globally integrated response on phytoplankton and primary production is in line with expectations—a high (low) zooplankton mortality results in a decrease (increase) of zooplankton and an increase (decrease) of phytoplankton. In contrast, the local response of zooplankton and phytoplankton depends on the region under consideration: In nutrient-limited regions, an increase (decrease) in zooplankton mortality leads to a decrease (increase) in both zooplankton and phytoplankton biomass. In contrast, in nutrient-replete regions, such as upwelling regions, we find an opposing response: an increase (decrease) of the zooplankton mortality leads to an increase (decrease) in both zooplankton and phytoplankton biomass. The results are further evaluated by relating the potential fisheries-induced changes in zooplankton mortality to those driven by CO2 emissions in a business-as-usual 21st century emission scenario. In our idealized case, the potential fisheries-induced impact can be of similar size as warming-induced changes in marine biogeochemistry.

Report of Working Group 22 on Iron Supply and its Impact on Biogeochemistry and Ecosystems in the North Pacific Ocean

OpenAIRE

2013-01-01

The Working Group on Iron Supply and its Impact on Biogeochemistry and Ecosystems in the North Pacific Ocean (WG 22) was established October 2007 under the direction of the Biological Oceanography Committee (BIO) and consisted of 20 members from all PICES member countries, including Co-Chairmen, Drs. Shigenobu Takeda (Japan) and Fei Chai (USA). The purpose of the Working Group was to examine the role of iron biogeochemistry and its impact on biological productivity and marine ecosystems. WG 2...

Bridging Food Webs, Ecosystem Metabolism, and Biogeochemistry Using Ecological Stoichiometry Theory

Directory of Open Access Journals (Sweden)

Nina Welti

2017-07-01

Full Text Available Although aquatic ecologists and biogeochemists are well aware of the crucial importance of ecosystem functions, i.e., how biota drive biogeochemical processes and vice-versa, linking these fields in conceptual models is still uncommon. Attempts to explain the variability in elemental cycling consequently miss an important biological component and thereby impede a comprehensive understanding of the underlying processes governing energy and matter flow and transformation. The fate of multiple chemical elements in ecosystems is strongly linked by biotic demand and uptake; thus, considering elemental stoichiometry is important for both biogeochemical and ecological research. Nonetheless, assessments of ecological stoichiometry (ES often focus on the elemental content of biota rather than taking a more holistic view by examining both elemental pools and fluxes (e.g., organismal stoichiometry and ecosystem process rates. ES theory holds the promise to be a unifying concept to link across hierarchical scales of patterns and processes in ecology, but this has not been fully achieved. Therefore, we propose connecting the expertise of aquatic ecologists and biogeochemists with ES theory as a common currency to connect food webs, ecosystem metabolism, and biogeochemistry, as they are inherently concatenated by the transfer of carbon, nitrogen, and phosphorous through biotic and abiotic nutrient transformation and fluxes. Several new studies exist that demonstrate the connections between food web ecology, biogeochemistry, and ecosystem metabolism. In addition to a general introduction into the topic, this paper presents examples of how these fields can be combined with a focus on ES. In this review, a series of concepts have guided the discussion: (1 changing biogeochemistry affects trophic interactions and ecosystem processes by altering the elemental ratios of key species and assemblages; (2 changing trophic dynamics influences the transformation and

Agricultural intensification exacerbates spillover effects on soil biogeochemistry in adjacent forest remnants.

Directory of Open Access Journals (Sweden)

Raphael K Didham

Full Text Available Land-use intensification is a central element in proposed strategies to address global food security. One rationale for accepting the negative consequences of land-use intensification for farmland biodiversity is that it could 'spare' further expansion of agriculture into remaining natural habitats. However, in many regions of the world the only natural habitats that can be spared are fragments within landscapes dominated by agriculture. Therefore, land-sparing arguments hinge on land-use intensification having low spillover effects into adjacent protected areas, otherwise net conservation gains will diminish with increasing intensification. We test, for the first time, whether the degree of spillover from farmland into adjacent natural habitats scales in magnitude with increasing land-use intensity. We identified a continuous land-use intensity gradient across pastoral farming systems in New Zealand (based on 13 components of farmer input and soil biogeochemistry variables, and measured cumulative off-site spillover effects of fertilisers and livestock on soil biogeochemistry in 21 adjacent forest remnants. Ten of 11 measured soil properties differed significantly between remnants and intact-forest reference sites, for both fenced and unfenced remnants, at both edge and interior. For seven variables, the magnitude of effects scaled significantly with magnitude of surrounding land-use intensity, through complex interactions with fencing and edge effects. In particular, total C, total N, δ15N, total P and heavy-metal contaminants of phosphate fertilizers (Cd and U increased significantly within remnants in response to increasing land-use intensity, and these effects were exacerbated in unfenced relative to fenced remnants. This suggests movement of livestock into surrounding natural habitats is a significant component of agricultural spillover, but pervasive changes in soil biogeochemistry still occur through nutrient spillover channels alone

Observed 20th Century Desert Dust Variability: Impact on Climate and Biogeochemistry

Energy Technology Data Exchange (ETDEWEB)

Mahowald, Natalie [Cornell University; Kloster, Silvia [Cornell University; Engelstaedter, S. [Cornell University; Moore, Jefferson Keith [University of California, Irvine; Mukhopadhyay, S. [Harvard University; McConnell, J. R. [Desert Research Institute, Reno, NV; Albani, S. [Cornell University; Doney, Scott C. [Woods Hole Oceanographic Institution (WHOI), Woods Hole, MA; Bhattacharya, A. [Harvard University; Curran, M. A. J. [Antarctic Climate and Ecosystems Cooperative Research Centre; Flanner, Mark G. [University of Michigan; Hoffman, Forrest M [ORNL; Lawrence, David M. [National Center for Atmospheric Research (NCAR); Lindsay, Keith [National Center for Atmospheric Research (NCAR); Mayewski, P. A. [University of Maine; Neff, Jason [University of Colorado, Boulder; Rothenberg, D. [Cornell University; Thomas, E. [British Antarctic Survey, Cambridge, UK; Thornton, Peter E [ORNL; Zender, Charlie S. [University of California, Irvine

2010-01-01

Desert dust perturbs climate by directly and indirectly interacting with incoming solar and outgoing long wave radiation, thereby changing precipitation and temperature, in addition to modifying ocean and land biogeochemistry. While we know that desert dust is sensitive to perturbations in climate and human land use, previous studies have been unable to determine whether humans were increasing or decreasing desert dust in the global average. Here we present observational estimates of desert dust based on paleodata proxies showing a doubling of desert dust during the 20th century over much, but not all the globe. Large uncertainties remain in estimates of desert dust variability over 20th century due to limited data. Using these observational estimates of desert dust change in combination with ocean, atmosphere and land models, we calculate the net radiative effect of these observed changes (top of atmosphere) over the 20th century to be -0.14 {+-} 0.11 W/m{sup 2} (1990-1999 vs. 1905-1914). The estimated radiative change due to dust is especially strong between the heavily loaded 1980-1989 and the less heavily loaded 1955-1964 time periods (-0.57 {+-} 0.46 W/m{sup 2}), which model simulations suggest may have reduced the rate of temperature increase between these time periods by 0.11 C. Model simulations also indicate strong regional shifts in precipitation and temperature from desert dust changes, causing 6 ppm (12 PgC) reduction in model carbon uptake by the terrestrial biosphere over the 20th century. Desert dust carries iron, an important micronutrient for ocean biogeochemistry that can modulate ocean carbon storage; here we show that dust deposition trends increase ocean productivity by an estimated 6% over the 20th century, drawing down an additional 4 ppm (8 PgC) of carbon dioxide into the oceans. Thus, perturbations to desert dust over the 20th century inferred from observations are potentially important for climate and biogeochemistry, and our understanding

Contrasting impacts of light reduction on sediment biogeochemistry in deep- and shallow-water tropical seagrass assemblages (Green Island, Great Barrier Reef).

Science.gov (United States)

Schrameyer, Verena; York, Paul H; Chartrand, Kathryn; Ralph, Peter J; Kühl, Michael; Brodersen, Kasper Elgetti; Rasheed, Michael A

2018-05-01

Seagrass meadows increasingly face reduced light availability as a consequence of coastal development, eutrophication, and climate-driven increases in rainfall leading to turbidity plumes. We examined the impact of reduced light on above-ground seagrass biomass and sediment biogeochemistry in tropical shallow- (∼2 m) and deep-water (∼17 m) seagrass meadows (Green Island, Australia). Artificial shading (transmitting ∼10-25% of incident solar irradiance) was applied to the shallow- and deep-water sites for up to two weeks. While above-ground biomass was unchanged, higher diffusive O 2 uptake (DOU) rates, lower O 2 penetration depths, and higher volume-specific O 2 consumption (R) rates were found in seagrass-vegetated sediments as compared to adjacent bare sand (control) areas at the shallow-water sites. In contrast, deep-water sediment characteristics did not differ between bare sand and vegetated sites. At the vegetated shallow-water site, shading resulted in significantly lower hydrogen sulphide (H 2 S) levels in the sediment. No shading effects were found on sediment biogeochemistry at the deep-water site. Overall, our results show that the sediment biogeochemistry of shallow-water (Halodule uninervis, Syringodium isoetifolium, Cymodocea rotundata and C. serrulata) and deep-water (Halophila decipiens) seagrass meadows with different species differ in response to reduced light. The light-driven dynamics of the sediment biogeochemistry at the shallow-water site could suggest the presence of a microbial consortium, which might be stimulated by photosynthetically produced exudates from the seagrass, which becomes limited due to lower seagrass photosynthesis under shaded conditions. Copyright © 2018 Elsevier Ltd. All rights reserved.

Observed 20th century desert dust variability: impact on climate and biogeochemistry

Directory of Open Access Journals (Sweden)

N. M. Mahowald

2010-11-01

Full Text Available Desert dust perturbs climate by directly and indirectly interacting with incoming solar and outgoing long wave radiation, thereby changing precipitation and temperature, in addition to modifying ocean and land biogeochemistry. While we know that desert dust is sensitive to perturbations in climate and human land use, previous studies have been unable to determine whether humans were increasing or decreasing desert dust in the global average. Here we present observational estimates of desert dust based on paleodata proxies showing a doubling of desert dust during the 20th century over much, but not all the globe. Large uncertainties remain in estimates of desert dust variability over 20th century due to limited data. Using these observational estimates of desert dust change in combination with ocean, atmosphere and land models, we calculate the net radiative effect of these observed changes (top of atmosphere over the 20th century to be −0.14 ± 0.11 W/m² (1990–1999 vs. 1905–1914. The estimated radiative change due to dust is especially strong between the heavily loaded 1980–1989 and the less heavily loaded 1955–1964 time periods (−0.57 ± 0.46 W/m², which model simulations suggest may have reduced the rate of temperature increase between these time periods by 0.11 °C. Model simulations also indicate strong regional shifts in precipitation and temperature from desert dust changes, causing 6 ppm (12 PgC reduction in model carbon uptake by the terrestrial biosphere over the 20th century. Desert dust carries iron, an important micronutrient for ocean biogeochemistry that can modulate ocean carbon storage; here we show that dust deposition trends increase ocean productivity by an estimated 6% over the 20th century, drawing down an additional 4 ppm (8 PgC of carbon dioxide into the oceans. Thus, perturbations to desert dust over the 20th century inferred from observations are potentially important for climate and

Sediment Biogeochemistry After the Entrance of Cable Bacteria

DEFF Research Database (Denmark)

Risgaard-Petersen, Nils

fields which may strongly modify ionic transports. They form pH extremes, and accelerate the dissolution of iron sulfides, and carbonates in subsurface sediment. They further promote the formation of iron oxides and carbonates at the sediment surface and stimulate the removal of sulfides......, sulfide-rich coastal sediments, salt marshes seasonally hypoxic basins, subtidal coastal mud plains, as well as freshwater sediments and waterlogged soils. In this talk I will review our current knowledge on how cable bacteria influence the biogeochemistry of sediments. The cable bacteria form electric...... and the formation of sulfate[3] Field studies conducted in the marine environment indicate that some of these effects are expressed in a way that marine systems with active cable bacteria populations have elevated phosphorus-retention{Sulu-Gambari, 2016 #1501} and acts as strong buffers against adverse stage...

Nutrient biogeochemistry of the eastern Arabian Sea during the southwest monsoon retreat

Digital Repository Service at National Institute of Oceanography (India)

George, R; Muraleedharan, K.R; Martin, G.D.; Sabu, P.; Gerson, V.J.; Dineshkumar, P.K.; Nair, S.M.; Chandramohanakumar, N.; Nair, K.K.C.

and adjoining southeastern Arabian Sea. Curr Sci 96:364–375 Jyothibabu R, Madhu NV, Jayalakshmi KV, Balachandran KK, Shiyas CA, Martin GD, Nair KKC (2006) Impact of freshwater influx on microzooplankton mediated food web in a tropical estuary (Cochin backwaters... ARTICLE Nutrient biogeochemistry of the eastern Arabian Sea during the southwest monsoon retreat Rejomon George • K. R. Muraleedharan • G. D. Martin • P. Sabu • Vijay John Gerson • P. K. Dineshkumar • S. M. Nair • N. Chandramohanakumar • K. K. C. Nair...

Effective Management of Ocean Biogeochemistry and Ecological Data: the BCO-DMO Story

Science.gov (United States)

Chandler, C. L.; Groman, R. C.; Allison, M. D.; Wiebe, P. H.; Glover, D. M.; Gegg, S. R.

2012-04-01

Data availability expectations of the research community, environmental management decision makers, and funding agency representatives are changing. Consequently, data management practices in many science communities are changing as well. In an effort to improve access to data generated by ocean biogeochemistry and ecological researchers funded by the United States (US) National Science Foundation (NSF) Division of Ocean Sciences (OCE), the Biological and Chemical Oceanography Data Management Office (BCO-DMO) was created in late 2006. Currently, the main BCO-DMO objective is to ensure availability of data resulting from select OCE and Office of Polar Programs (OPP) research awards granted by the US NSF. An important requirement for the BCO-DMO data management system is that it provides open access to data that are supported by sufficient metadata to enable data discovery and accurate reuse. The office manages and serves all types of oceanographic data (in situ, experimental, model results) generated during the research process and contributed by the originating investigators from large national programs and medium-sized collaborative research projects, as well as researchers with single investigator awards. BCO-DMO staff members have made strategic use of standards and use of terms from controlled vocabularies while balancing the need to maintain flexible data ingest systems that accommodate the heterogeneous nature of ocean biogeochemistry and ecological research data. Many of the discrete ocean biogeochemistry data sets managed by BCO-DMO are still acquired manually, often with prototype sensor systems. Data sets such as these that are not "born-digital" present a significant management challenge. Use of multiple levels of term-mappings and development of an ontology has enabled BCO-DMO to incorporate a semantically enabled faceted search into the data access system that will improve data access through enhanced data discovery. BCO-DMO involves an ongoing

Marine biogeochemistry of mercury

International Nuclear Information System (INIS)

Gill, G.A.

1986-01-01

Noncontaminating sample collection and handling procedures and accurate and sensitive analysis methods were developed to measure sub-picomolar Hg concentrations in seawater. Reliable and diagnostic oceanographic Hg distributions were obtained, permitting major processes governing the marine biogeochemistry of Hg to be identified. Mercury concentrations in the northwest Atlantic, central Pacific, southeast Pacific, and Tasman Sea ranged from 0.5 to 12 pM. Vertical Hg distributions often exhibited a maximum within or near the main thermocline. At similar depths, Hg concentrations in the northwest Atlantic Ocean were elevated compared to the N. Pacific Ocean. This pattern appears to result from a combination of enhanced supply of Hg to the northwest Atlantic by rainfall and scavenging removal along deep water circulation pathways. These observations are supported by geochemical steady-state box modelling which predicts a relatively short mean residence time for Hg in the oceans; demonstrating the reactive nature of Hg in seawater and precluding significant involvement in nutrient-type recyclic. Evidence for the rapid removal of Hg from seawater was obtained at two locations. Surface seawater Hg measurements along 160 0 W (20 0 N to 20 0 S) showed a depression in the equatorial upwelling area which correlated well with the transect region exhibiting low 234 Th/ 238 U activity ratios. This relationship implies that Hg will be scavenged and removed from surface seawater in biologically productive oceanic zones. Further, a broad minimum in the vertical distribution of Hg was observed to coincide with the intense oxygen minimum zone in the water column in coastal waters off Peru

Uranium biogeochemistry: A bibliography and report on the state of the art

International Nuclear Information System (INIS)

Dunn, C.E.; Ek, J.

1985-02-01

The report comprises a compilation of the world literature published up to the end of 1982, that is classified under the general heading of 'Uranium Biogeochemistry'. This subject examines the distribution of U within natural organic systems. To the exploration geologist the study is concerned mainly with the analysis of plant material in an attempt to identify variations in U concentrations which may be attributed to concealed U mineralization. In addition, references are included on geobotany. Information included in 130 papers is summarized in tabular form following the list of references

Biogeochemistry of dihydrogen (H2).

Science.gov (United States)

Hoehler, Tori M

2005-01-01

Hydrogen has had an important and evolving role in Earth's geo- and biogeochemistry, from prebiotic to modern times. On the earliest Earth, abiotic sources of H2 were likely stronger than in the present. Volcanic out-gassing and hydrothermal circulation probably occurred at several times the modern rate, due to presumably higher heat flux. The H2 component of volcanic emissions was likely buffered close to the modern value by an approximately constant mantle oxidation state since 3.9 billion years ago, and may have been higher before that, if the early mantle was more reducing. The predominantly ultramafic character of the early, undifferentiated crust could have led to increased serpentinization and release of H2 by hydrothermal circulation, as in modern ultramafic-hosted vents. At the same time, the reactive atmospheric sink for H2 was likely weaker. Collectively, these factors suggest that steady state levels of H2 in the prebiotic atmosphere were 3-4 orders of magnitude higher than at present, and possibly higher still during transient periods following the delivery of Fe and Ni by large impact events. These elevated levels had direct or indirect impacts on the redox state of the atmosphere, the radiation budget, the production of aerosol hazes, and the genesis of biochemical precursor compounds. The early abiotic cycling of H2 helped to establish the environmental and chemical context for the origins of life on Earth. The potential for H2 to serve as a source of energy and reducing power, and to afford a means of energy storage by the establishment of proton gradients, could have afforded it a highly utilitarian role in the earliest metabolic chemistry. Some origin of life theories suggest the involvement of H2 in the first energy-generating metabolism, and the widespread and deeply-branching nature of H2-utilization in the modern tree of life suggests that it was at least a very early biochemical innovation. The abiotic production of H2 via several mechanisms

Global terrestrial biogeochemistry: Perturbations, interactions, and time scales

Energy Technology Data Exchange (ETDEWEB)

Braswell, B.H. Jr.

1996-12-01

Global biogeochemical processes are being perturbed by human activity, principally that which is associated with industrial activity and expansion of urban and agricultural complexes. Perturbations have manifested themselves at least since the beginning of the 19th Century, and include emissions of CO{sub 2} and other pollutants from fossil fuel combustion, agricultural emissions of reactive nitrogen, and direct disruption of ecosystem function through land conversion. These perturbations yield local impacts, but there are also global consequences that are the sum of local-scale influences. Several approaches to understanding the global-scale implications of chemical perturbations to the Earth system are discussed. The lifetime of anthropogenic CO{sub 2} in the atmosphere is an important concept for understanding the current and future commitment to an altered atmospheric heat budget. The importance of the terrestrial biogeochemistry relative to the lifetime of excess CO{sub 2} is demonstrated using dynamic, aggregated models of the global carbon cycle.

Climate engineering and the ocean: effects on biogeochemistry and primary production

Science.gov (United States)

Lauvset, Siv K.; Tjiputra, Jerry; Muri, Helene

2017-12-01

Here we use an Earth system model with interactive biogeochemistry to project future ocean biogeochemistry impacts from the large-scale deployment of three different radiation management (RM) climate engineering (also known as geoengineering) methods: stratospheric aerosol injection (SAI), marine sky brightening (MSB), and cirrus cloud thinning (CCT). We apply RM such that the change in radiative forcing in the RCP8.5 emission scenario is reduced to the change in radiative forcing in the RCP4.5 scenario. The resulting global mean sea surface temperatures in the RM experiments are comparable to those in RCP4.5, but there are regional differences. The forcing from MSB, for example, is applied over the oceans, so the cooling of the ocean is in some regions stronger for this method of RM than for the others. Changes in ocean net primary production (NPP) are much more variable, but SAI and MSB give a global decrease comparable to RCP4.5 (˜ 6 % in 2100 relative to 1971-2000), while CCT gives a much smaller global decrease of ˜ 3 %. Depending on the RM methods, the spatially inhomogeneous changes in ocean NPP are related to the simulated spatial change in the NPP drivers (incoming radiation, temperature, availability of nutrients, and phytoplankton biomass) but mostly dominated by the circulation changes. In general, the SAI- and MSB-induced changes are largest in the low latitudes, while the CCT-induced changes tend to be the weakest of the three. The results of this work underscore the complexity of climate impacts on NPP and highlight the fact that changes are driven by an integrated effect of multiple environmental drivers, which all change in different ways. These results stress the uncertain changes to ocean productivity in the future and advocate caution at any deliberate attempt at large-scale perturbation of the Earth system.

Biogeochemistry of radionuclides in aquatic environments. Annual progress report, 1975--1976

International Nuclear Information System (INIS)

Schell, W.R.

1976-01-01

The present work is a combination of studies on natural radionuclides 210 Po and 210 Pb in aquatic environments and on the biogeochemistry of the transuranium elements 239 Pu, 240 Pu, and 241 Am, in the Bikini Lagoon. The objectives of the biogeochemical studies are to evaluate the cycling of the radionuclides in the aquatic environment from their sources, their distribution within ecosystems, their uptake by biota, and their sinks. Detailed studies of the conditions which now exist some 17 years since the last nuclear detonations at Bikini should give a basis for predicting the effects of large-scale or low-level continuous releases of nuclear waste products in the marine environment

Microbial antimony biogeochemistry: Enzymes, regulation, and related metabolic pathways

Science.gov (United States)

Li, Jingxin; Qian Wang,; Oremland, Ronald S.; Kulp, Thomas R.; Rensing, Christopher; Wang, Gejiao

2016-01-01

Antimony (Sb) is a toxic metalloid that occurs widely at trace concentrations in soil, aquatic systems, and the atmosphere. Nowadays, with the development of its new industrial applications and the corresponding expansion of antimony mining activities, the phenomenon of antimony pollution has become an increasingly serious concern. In recent years, research interest in Sb has been growing and reflects a fundamental scientific concern regarding Sb in the environment. In this review, we summarize the recent research on bacterial antimony transformations, especially those regarding antimony uptake, efflux, antimonite oxidation, and antimonate reduction. We conclude that our current understanding of antimony biochemistry and biogeochemistry is roughly equivalent to where that of arsenic was some 20 years ago. This portends the possibility of future discoveries with regard to the ability of microorganisms to conserve energy for their growth from antimony redox reactions and the isolation of new species of “antimonotrophs.”

Meteorology, physical oceanography, transport of water, biogeochemistry, and other parameters collected at fixed locations in the open ocean from the OceanSITES network

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This collection comprises data covering meteorology, physical oceanography, transport of water, biogeochemistry, and parameters relevant to the carbon cycle, ocean...

Small-scale variability in peatland pore-water biogeochemistry, Hudson Bay Lowland, Canada.

Science.gov (United States)

Ulanowski, T A; Branfireun, B A

2013-06-01

The Hudson Bay Lowland (HBL) of northern Ontario, Manitoba and Quebec, Canada is the second largest contiguous peatland complex in the world, currently containing more than half of Canada's soil carbon. Recent concerns about the ecohydrological impacts to these large northern peatlands resulting from climate change and resource extraction have catalyzed a resurgence in scientific research into this ecologically important region. However, the sheer size, heterogeneity and elaborate landscape arrangements of this ecosystem raise important questions concerning representative sampling of environmental media for chemical or physical characterization. To begin to quantify such variability, this study assessed the small-scale spatial (1m) and short temporal (21 day) variability of surface pore-water biogeochemistry (pH, dissolved organic carbon, and major ions) in a Sphagnum spp.-dominated, ombrotrophic raised bog, and a Carex spp.-dominated intermediate fen in the HBL. In general, pore-water pH and concentrations of dissolved solutes were similar to previously reported literature values from this region. However, systematic sampling revealed consistent statistically significant differences in pore-water chemistries between the bog and fen peatland types, and large within-site spatiotemporal variability. We found that microtopography in the bog was associated with consistent differences in most biogeochemical variables. Temporal changes in dissolved solute chemistry, particularly base cations (Na(+), Ca(2+) and Mg(2+)), were statistically significant in the intermediate fen, likely a result of a dynamic connection between surficial waters and mineral-rich deep groundwater. In both the bog and fen, concentrations of SO4(2-) showed considerable spatial variability, and a significant decrease in concentrations over the study period. The observed variability in peatland pore-water biogeochemistry over such small spatial and temporal scales suggests that under-sampling in

Biogeochemistry and community ecology in a spring-fed urban river following a major earthquake.

Science.gov (United States)

Wells, Naomi S; Clough, Tim J; Condron, Leo M; Baisden, W Troy; Harding, Jon S; Dong, Y; Lewis, G D; Lear, Gavin

2013-11-01

In February 2011 a MW 6.3 earthquake in Christchurch, New Zealand inundated urban waterways with sediment from liquefaction and triggered sewage spills. The impacts of, and recovery from, this natural disaster on the stream biogeochemistry and biology were assessed over six months along a longitudinal impact gradient in an urban river. The impact of liquefaction was masked by earthquake triggered sewage spills (~20,000 m(3) day(-1) entering the river for one month). Within 10 days of the earthquake dissolved oxygen in the lowest reaches was urban natural disasters. Copyright © 2013 Elsevier Ltd. All rights reserved.

Comparative cryptogam ecology: a review of bryophyte and lichen traits that drive biogeochemistry.

Science.gov (United States)

Cornelissen, Johannes H C; Lang, Simone I; Soudzilovskaia, Nadejda A; During, Heinjo J

2007-05-01

Recent decades have seen a major surge in the study of interspecific variation in functional traits in comparative plant ecology, as a tool to understanding and predicting ecosystem functions and their responses to environmental change. However, this research has been biased almost exclusively towards vascular plants. Very little is known about the role and applicability of functional traits of non-vascular cryptogams, particularly bryophytes and lichens, with respect to biogeochemical cycling. Yet these organisms are paramount determinants of biogeochemistry in several biomes, particularly cold biomes and tropical rainforests, where they: (1) contribute substantially to above-ground biomass (lichens, bryophytes); (2) host nitrogen-fixing bacteria, providing major soil N input (lichens, bryophytes); (3) control soil chemistry and nutrition through the accumulation of recalcitrant polyphenols (bryophytes) and through their control over soil and vegetation hydrology and temperatures; (4) both promote erosion (rock weathering by lichens) and prevent it (biological crusts in deserts); (5) provide a staple food to mammals such as reindeer (lichens) and arthropodes, with important feedbacks to soils and biota; and (6) both facilitate and compete with vascular plants. Here we review current knowledge about interspecific variation in cryptogam traits with respect to biogeochemical cycling and discuss to what extent traits and measuring protocols needed for bryophytes and lichens correspond with those applied to vascular plants. We also propose and discuss several new or recently introduced traits that may help us understand and predict the control of cryptogams over several aspects of the biogeochemistry of ecosystems. Whilst many methodological challenges lie ahead, comparative cryptogam ecology has the potential to meet some of the important challenges of understanding and predicting the biogeochemical and climate consequences of large-scale environmental changes driving

Evaluating the effect of oceanic striations on biogeochemistry in the eastern South Pacific

Science.gov (United States)

Auger, P. A.; Belmadani, A.; Donoso, D.; Hormazabal, S.

2017-12-01

In recent years, quasi-zonal mesoscale jet-like features or striations have been ubiquitously detected in the time-mean circulation of the world ocean using satellite altimetry and in situ data. Most likely the result of some organization of the mesoscale eddy field such as preferred eddy tracks, these striations may be able to advect and mix physical properties. Yet, their impact on biogeochemistry has not been assessed yet. Off central Chile, the interaction between striations and sharp background gradients of biogeochemical properties may spatially structure biogeochemistry, with potential implications for marine ecosystems. For instance, striations may affect the mean horizontal distribution of surface phytoplankton biomass in the coastal transition zone (CTZ), or the structure and variability of the oxygen-minimum zone (OMZ). Here, we evaluate the expression of striations in satellite records of ocean color and in a set of numerically simulated biogeochemical tracers off central Chile (chlorophyll, carbon, primary production, oxygen, nutrients), averaged over the surface productive layer, the OMZ at intermediate depths or the water column. A multi-decadal hindcast simulation of the physical-biogeochemical dynamics was run over the period 1984-2013 using the ROMS-PISCES (for Regional Oceanic Modeling System - Pelagic Interactions Scheme for Carbon and Ecosystem Studies) platform at an eddy-resolving resolution. Satellite data and model outputs are spatially high-pass filtered to remove the large-scale signal and evaluate the match between striations and biogeochemical tracer anomalies in the model and observations. The effect of striations on the mean shape of the zonal gradient of phytoplankton biomass in the CTZ between eutrophic coastal waters and oligotrophic offshore waters is then deduced. The fraction of tracer anomalies due to striations is quantified, and the structuring roles of stationary and transient striations are respectively explored by matching

The Mojave Subsurface Bio-Geochemistry Explorer (MOSBE)

Science.gov (United States)

Guerrero, J.; Beegle, L.; Abbey, W.; Bhartia, R.; Kounaves, S.; Russell, M.; Towles, D.

2012-01-01

The MOSBE Team has developed a terrestrial field campaign to explore two subsurface biological habitats under the Mojave Desert. This field campaign will not only help us understand terrestrial desert biology, but also will develop methodologies and strategies for potential future Mars missions that would seek to explore the Martian subsurface. We have proposed to the ASTEP program to integrate a suite of field demonstrated instruments with a 20 m subsurface drill as a coherent unit, the Mojave Subsurface Bio-geochemistry Explorer. The ATK Space Modular Planetary Drill System (MPDS) requires no drilling fluid, which allows aseptic sampling, can penetrate lithic ground up to 20 meters of depth, and utilizes less than 100 Watts throughout the entire depth. The drill has been developed and demonstrated in field testing to a depth of 10 meters in Arizona, December 2002. In addition to caching a continuous core throughout the drilling depth, it also generates and caches cuttings and fines that are strata-graphically correlated with the core. As a core segment is brought to the surface, it will be analyzed for texture and structure by a color microscopic imager and for relevant chemistry and mineralogy with a UV fluorescence/Raman spectrometer. Organic and soluble ionic species will be identified through two instruments -- a microcapillary electrophoresis, and an ion trap mass spectrometer that have been developed under PIDDP, ASTID and MIDP funding.

Biogeochemistry of the Ballarat East goldfield

Energy Technology Data Exchange (ETDEWEB)

Stott, J.; Arne, D. [University of Ballarat, VIC (Australia). Minerals Industry Research Institute]|[Posgold Ltd, Tennant Creek, NT (Australia); Waldron, H. [Becquerel Laboratories, Lucas Heights, NSW (Australia)

1998-12-31

The gold deposits along the crest of the Whitehorse Range were extensively worked last century, and the area was revegetated during the 1930s with Monterey Pine (P. radiata). P. Radiata of different ages were sampled at 25m intervals along two east-west traverses roughly perpendicular to the strike of the Ballarat East field. Sampling occurred during the winter of 1995 following heavy rains. Blackwood (Acacia melanoxylon) and Chinese scrub (Cassinia aculeata) were also sampled for comparative purposes. A third traverse through a belt of remnant eucalyptus (E. obliqua, E. dives, and E. macrorhyncha) was sampled to the south of the pine plantation in 1996. These samples were washed in de-ionised water. Sample material included either leaves or needles, the tips of twigs, and outer bark. The samples were dried, pulverized and analysed using instrumental neutron activation at Lucas Heights, NSW. Gold and As from Cassinia leaves and twigs, and Eucalyptus bark show a good correlation with extensions of known mineralized trends inferred from aerial photographs, as do Ce, Cr, La, Sm, Sc and Th. Samples of P. radiata needles and bark show only a moderate correlation with mineralized trends for Au and As. Repeat sampling to determine sampling variance has revealed probable contamination of Eucalyptus outer bark by dust. Sequential washing experiments indicate that the dust is difficult to remove from fibrous outer bark. Therefore, while application of biogeochemistry to exploration in the central Victorian Goldfields appears feasible, caution must be exercised in the interpretation of data from outer bark for some Eucalyptus species

Biogeochemistry of the Ballarat East goldfield

International Nuclear Information System (INIS)

Stott, J.; Arne, D.; Waldron, H.

1998-01-01

The gold deposits along the crest of the Whitehorse Range were extensively worked last century, and the area was revegetated during the 1930s with Monterey Pine (P. radiata). P. Radiata of different ages were sampled at 25m intervals along two east-west traverses roughly perpendicular to the strike of the Ballarat East field. Sampling occurred during the winter of 1995 following heavy rains. Blackwood (Acacia melanoxylon) and Chinese scrub (Cassinia aculeata) were also sampled for comparative purposes. A third traverse through a belt of remnant eucalyptus (E. obliqua, E. dives, and E. macrorhyncha) was sampled to the south of the pine plantation in 1996. These samples were washed in de-ionised water. Sample material included either leaves or needles, the tips of twigs, and outer bark. The samples were dried, pulverized and analysed using instrumental neutron activation at Lucas Heights, NSW. Gold and As from Cassinia leaves and twigs, and Eucalyptus bark show a good correlation with extensions of known mineralized trends inferred from aerial photographs, as do Ce, Cr, La, Sm, Sc and Th. Samples of P. radiata needles and bark show only a moderate correlation with mineralized trends for Au and As. Repeat sampling to determine sampling variance has revealed probable contamination of Eucalyptus outer bark by dust. Sequential washing experiments indicate that the dust is difficult to remove from fibrous outer bark. Therefore, while application of biogeochemistry to exploration in the central Victorian Goldfields appears feasible, caution must be exercised in the interpretation of data from outer bark for some Eucalyptus species

Global Methane Biogeochemistry

Science.gov (United States)

Reeburgh, W. S.

2003-12-01

. Methane absorbs infrared radiation in the troposphere, as do CO2 and H2O, and is an important greenhouse gas (Lacis et al., 1981; Ramanathan et al., 1985).A number of review articles on atmospheric CH4 have appeared during the last 15 years. Cicerone and Oremland (1988) reviewed evidence for the temporal atmospheric increase, updated source estimates in the global CH4 budget, and placed constraints on the global budget, emphasizing that the total is well constrained, but that the constituent sources may be uncertain by a factor of 2 or more. This paper was part of a special section in Global Biogeochemical Cycles that resulted from a 1987 American Chemical Society Symposium, "Atmospheric Methane: Formation and Fluxes form the Biosphere and Geosphere." Tyler (1991) and Wahlen (1993) emphasized new information on stable isotopes of CH4 and 14CH4, respectively. Several reviews deal with the microbially mediated CH4 oxidation. King (1992) reviewed the ecology of microbial CH4 oxidation, emphasizing the important role of this process in global CH4 dynamics. R. S. Hanson and T. E. Hanson (1996) reviewed the physiology and taxonomy of methylotrophic bacteria, their role in the global carbon cycle, and the ecology of methanotrophic bacteria. Conrad (1996) reviewed the role of soils and soil microbial communities as controllers of CH4 fluxes, as well as those of H2, CO, OCS, N2O, and NO. Two meetings focusing on CH4 biogeochemistry were held in 1991: an NATO Advanced Science Workshop held at Mt. Hood, OR, and the Tenth International Symposium on Environmental Biogeochemistry (ISEB). A dedicated issue of Chemosphere (26(1-4), 1993) contains contributions from the NATO workshop; two additional volumes (Khalil, 1993 and Khalil, 2000) contain a report of the workshop and updates of important topics. Contributions to the ISEB meeting are presented in Oremland (1993). Wuebbles and Hayhoe (2002) reviewed the effects of CH4 on atmospheric chemistry and examined the direct and indirect

Genes, isotopes, and ecosystem biogeochemistry. Dissecting methane flux at the leading edge of global change

Energy Technology Data Exchange (ETDEWEB)

Saleska, Scott [Univ. of Arizona, Tucson, AZ (United States); Rich, Virginia [The Ohio State Univ., Columbus, OH (United States); Tyson, Gene [Univ. of Queensland, St. Lucia (Australia); Chanton, Jeff [Florida State Univ., Tallahassee, FL (United States); Crill, Patrick [Stockholm Univ. (Sweden); Li, Changshen [Univ. of New Hampshire, Durham, NH (United States)

2016-02-22

This project integrates across three fields (microbiology, biogeochemistry, and modeling) to understand the mechanisms of methane cycling in thawing permafrost. We have made substantial progress in each area, and in cross-cutting interdisciplinary synthesis. Large releases of CH₄ from thawing permafrost to the atmosphere, a strong positive feedback to global warming, are plausible but little is known about the controls on such release. Our project (“IsoGenie”) addresses the key question: What is the interplay of microbial communities and soil organic matter composition in the decomposition of organic C to CH₄ across a permafrost thaw gradient?

Manganese biogeochemistry in a central Czech Republic catchment

Science.gov (United States)

Navratil, T.; Shanley, J.B.; Skrivan, P.; Kram, P.; Mihaljevic, M.; Drahota, P.

2007-01-01

Mn biogeochemistry was studied from 1994 to 2003 in a small forested catchment in the central Czech Republic using the watershed mass balance approach together with measurements of internal stores and fluxes. Mn inputs in bulk deposition were relatively constant during a period of sharply decreasing acidic deposition, suggesting that the Mn source was terrestrial, and not from fossil fuel combustion. Mn inputs in bulk deposition and Mn supplied by weathering each averaged 13 mg m-2 year-1 (26 mg m -2 year-1 total input), whereas Mn export in streamwater and groundwater averaged 43 mg m-2 year-1. Thus an additional Mn source is needed to account for 17 mg m-2 year -1. Internal fluxes and pools of Mn were significantly greater than annual inputs and outputs. Throughfall Mn flux was 70 mg m-2 year-1, litterfall Mn flux was 103 mg m-2 year -1, and Mn net uptake by vegetation was 62 mg m-2 year-1. Large pools of labile or potentially labile Mn were present in biomass and surficial soil horizons. Small leakages from these large pools likely supply the additional Mn needed to close the watershed mass balance. This leakage may reflect an adjustment of the ecosystem to recent changes in atmospheric acidity. ?? 2007 Springer Science+Business Media B.V.

Limnology of the Green Lakes Valley: Phytoplankton ecology and dissolved organic matter biogeochemistry at a long-term ecological research site

Science.gov (United States)

Miller, Matthew P.; McKnight, Diane M.

2015-01-01

Background: Surface waters are the lowest points in the landscape, and therefore serve as excellent integrators and indicators of changes taking place in the surrounding terrestrial and atmospheric environment.Aims: Here we synthesise the findings of limnological studies conducted during the past 15 years in streams and lakes in the Green Lakes Valley, which is part of the Niwot Ridge Long-term Ecological Research (LTER) Site.Methods: The importance of these studies is discussed in the context of aquatic ecosystems as indicators, integrators, and regulators of environmental change. Specifically, investigations into climatic, hydrologic, and nutrient controls on present-day phytoplankton, and historical diatom, community composition in the alpine lake, Green Lake 4, are reviewed. In addition, studies of spatial and temporal patterns in dissolved organic matter (DOM) biogeochemistry and reactive transport modelling that have taken place in the Green Lakes Valley are highlighted.Results and conclusions: The findings of these studies identify specific shifts in algal community composition and DOM biogeochemistry that are indicative of changing environmental conditions and provide a framework for detecting future environmental change in the Green Lakes Valley and in other alpine watersheds. Moreover, the studies summarised here demonstrate the importance of long-term monitoring programmes such as the LTER programme.

A microbial biogeochemistry network for soil carbon and nitrogen cycling and methane flux: model structure and application to Asia

Science.gov (United States)

Xu, X.; Song, C.; Wang, Y.; Ricciuto, D. M.; Lipson, D.; Shi, X.; Zona, D.; Song, X.; Yuan, F.; Oechel, W. C.; Thornton, P. E.

2017-12-01

A microbial model is introduced for simulating microbial mechanisms controlling soil carbon and nitrogen biogeochemical cycling and methane fluxes. The model is built within the CN (carbon-nitrogen) framework of Community Land Model 4.5, named as CLM-Microbe to emphasize its explicit representation of microbial mechanisms to biogeochemistry. Based on the CLM4.5, three new pools were added: bacteria, fungi, and dissolved organic matter. It has 11 pools and 34 transitional processes, compared with 8 pools and 9 transitional flow in the CLM4.5. The dissolve organic carbon was linked with a new microbial functional group based methane module to explicitly simulate methane production, oxidation, transport and their microbial controls. Comparing with CLM4.5-CN, the CLM-Microbe model has a number of new features, (1) microbial control on carbon and nitrogen flows between soil carbon/nitrogen pools; (2) an implicit representation of microbial community structure as bacteria and fungi; (3) a microbial functional-group based methane module. The model sensitivity analysis suggests the importance of microbial carbon allocation parameters on soil biogeochemistry and microbial controls on methane dynamics. Preliminary simulations validate the model's capability for simulating carbon and nitrogen dynamics and methane at a number of sites across the globe. The regional application to Asia has verified the model in simulating microbial mechanisms in controlling methane dynamics at multiple scales.

Microbial Community Structure and Arsenic Biogeochemistry in an Acid Vapor-Formed Spring in Tengchong Geothermal Area, China.

Science.gov (United States)

Jiang, Zhou; Li, Ping; Jiang, Dawei; Dai, Xinyue; Zhang, Rui; Wang, Yanhong; Wang, Yanxin

2016-01-01

Arsenic biogeochemistry has been studied extensively in acid sulfate-chloride hot springs, but not in acid sulfate hot springs with low chloride. In this study, Zhenzhuquan in Tengchong geothermal area, a representative acid sulfate hot spring with low chloride, was chosen to study arsenic geochemistry and microbial community structure using Illumina MiSeq sequencing. Over 0.3 million 16S rRNA sequence reads were obtained from 6-paired parallel water and sediment samples along its outflow channel. Arsenic oxidation occurred in the Zhenxhuquan pool, with distinctly high ratios of arsenate to total dissolved arsenic (0.73-0.86). Coupled with iron and sulfur oxidation along the outflow channel, arsenic accumulated in downstream sediments with concentrations up to 16.44 g/kg and appeared to significantly constrain their microbial community diversity. These oxidations might be correlated with the appearance of some putative functional microbial populations, such as Aquificae and Pseudomonas (arsenic oxidation), Sulfolobus (sulfur and iron oxidation), Metallosphaera and Acidicaldus (iron oxidation). Temperature, total organic carbon and dissolved oxygen significantly shaped the microbial community structure of upstream and downstream samples. In the upstream outflow channel region, most microbial populations were microaerophilic/anaerobic thermophiles and hyperthermophiles, such as Sulfolobus, Nocardia, Fervidicoccus, Delftia, and Ralstonia. In the downstream region, aerobic heterotrophic mesophiles and thermophiles were identified, including Ktedonobacteria, Acidicaldus, Chthonomonas and Sphingobacteria. A total of 72.41-95.91% unassigned-genus sequences were derived from the downstream high arsenic sediments 16S rRNA clone libraries. This study could enable us to achieve an integrated understanding on arsenic biogeochemistry in acid hot springs.

Biogeochemistry of a Field-Scale Sulfate Reducing Bioreactor Treating Mining Influenced Water

Science.gov (United States)

Drennan, D.; Lee, I.; Landkamer, L.; Figueroa, L. A.; Webb, S.; Sharp, J. O.

2012-12-01

Acidity, metal release, and toxicity may be environmental health concerns in areas influenced by mining. Mining influenced waters (MIW) can be remediated through the establishment of Sulfate Reducing Bioreactors (SRBRs) as part of engineered passive treatment systems. The objective of our research is an enhanced understanding of the biogeochemistry in SRBRs by combining molecular biological and geochemical techniques. Bioreactor reactive substrate, settling pond water, and effluent (from the SRBR) were collected from a field scale SRBR in Arizona, which has been in operation for approximately 3 years. Schematically, the water passes through the SRBR; combines with flow that bypasses the SRBR into the and goes into the mixing pond, and finally is released as effluent to aerobic polishing cells. High throughput sequencing of extracted DNA revealed that Proteobacteria dominated the reactive substrate (61%), settling pond (93%), and effluent (50%), with the next most abundant phylum in all samples (excluding uncultured organisms) being Bacteriodes (1-17%). However, at the superclass level, the three samples were more variable. Gammaproteobacteria dominated the reactive substrate (35%), Betaproteobacteria in the settling pond (63%) and finally the effluent was dominated by Epsilonproteobacteria (Helicobacteraceae) (43%). Diversity was most pronounced in association with the reactor matrix, and least diverse in the settling pond. Putative functional analysis revealed a modest presence of sulfate/sulfur reducing bacteria (SRB) (>5%) in both the matrix and settling pond but a much higher abundance (43%) of sulfur reducing bacteria in the effluent. Interestingly this effluent population was composed entirely of the family Helicobacteraceae (sulfur reduction II via polysulfide pathway). Other putative functions of interest include metal reduction in the matrix (3%) and effluent (3%), as well as polysaccharide degradation, which was largely abundant in all samples (21

Microbial Community Structure and Arsenic Biogeochemistry in an Acid Vapor-Formed Spring in Tengchong Geothermal Area, China.

Directory of Open Access Journals (Sweden)

Zhou Jiang

Full Text Available Arsenic biogeochemistry has been studied extensively in acid sulfate-chloride hot springs, but not in acid sulfate hot springs with low chloride. In this study, Zhenzhuquan in Tengchong geothermal area, a representative acid sulfate hot spring with low chloride, was chosen to study arsenic geochemistry and microbial community structure using Illumina MiSeq sequencing. Over 0.3 million 16S rRNA sequence reads were obtained from 6-paired parallel water and sediment samples along its outflow channel. Arsenic oxidation occurred in the Zhenxhuquan pool, with distinctly high ratios of arsenate to total dissolved arsenic (0.73-0.86. Coupled with iron and sulfur oxidation along the outflow channel, arsenic accumulated in downstream sediments with concentrations up to 16.44 g/kg and appeared to significantly constrain their microbial community diversity. These oxidations might be correlated with the appearance of some putative functional microbial populations, such as Aquificae and Pseudomonas (arsenic oxidation, Sulfolobus (sulfur and iron oxidation, Metallosphaera and Acidicaldus (iron oxidation. Temperature, total organic carbon and dissolved oxygen significantly shaped the microbial community structure of upstream and downstream samples. In the upstream outflow channel region, most microbial populations were microaerophilic/anaerobic thermophiles and hyperthermophiles, such as Sulfolobus, Nocardia, Fervidicoccus, Delftia, and Ralstonia. In the downstream region, aerobic heterotrophic mesophiles and thermophiles were identified, including Ktedonobacteria, Acidicaldus, Chthonomonas and Sphingobacteria. A total of 72.41-95.91% unassigned-genus sequences were derived from the downstream high arsenic sediments 16S rRNA clone libraries. This study could enable us to achieve an integrated understanding on arsenic biogeochemistry in acid hot springs.

Historical and future trends in ocean climate and biogeochemistry

International Nuclear Information System (INIS)

Doney, Scott C.; Bopp, Laurent; Long, Matthew C.

2014-01-01

Changing atmospheric composition due to human activities, primarily carbon dioxide (CO 2 ) emissions from fossil fuel burning, is already impacting ocean circulation, biogeochemistry, and ecology, and model projections indicate that observed trends will continue or even accelerate over this century. Elevated atmospheric CO 2 alters Earth's radiative balance, leading to global-scale warming and climate change. The ocean stores the majority of resulting anomalous heat, which in turn drives other physical, chemical, and biological impacts. Sea surface warming and increased ocean vertical stratification are projected to reduce global-integrated primary production and export flux as well as to lower subsurface dissolved oxygen concentrations. Upper trophic levels will be affected both directly by warming and indirectly from changes in productivity and expanding low oxygen zones. The ocean also absorbs roughly one-quarter of present-day anthropogenic CO 2 emissions. The resulting changes in seawater chemistry, termed ocean acidification, include declining pH and saturation state for calcium carbon minerals that may have widespread impacts on many marine organisms. Climate warming will likely slow ocean CO 2 uptake but is not expected to significantly reduce upper ocean acidification. Improving the accuracy of future model projections requires better observational constraints on current rates of ocean change and a better understanding of the mechanisms controlling key physical and biogeochemical processes. (authors)

The GRASP project - a multidisciplinary study of hydrology and biogeochemistry in a periglacial catchment area

Science.gov (United States)

Johansson, Emma; Lindborg, Tobias

2017-04-01

The Arctic region is sensitive to global warming, and permafrost thaw and release of old carbon are examples of processes that may have a positive feedback effect to the global climate system. Quantification and assumptions on future change are often based on model predictions. Such models require cross-disciplinary data of high quality that often is lacking. Biogeochemical processes in the landscape are highly influenced by the hydrology, which in turn is intimately related to permafrost processes. Thus, a multidisciplinary approach is needed when collecting data and setting up field experiments aiming at increase the understanding of these processes. Here we summarize and present data collected in the GRASP, Greenland Analogue Surface Project. GRASP is a catchment-scale field study of the periglacial area in the Kangerlussuaq region, West Greenland, focusing on hydrological and biogeochemical processes in the landscape. The site investigations were initiated in 2010 and have since then resulted in three separate data sets published in ESSD (Earth system and Science Data) each one focusing on i) meteorological data and hydrology, ii) biogeochemistry and iii) geometries of sediments and the active layer. The three data-sets, which are freely available via the PANGAEA data base, enable conceptual and coupled numerical modeling of hydrological and biogeochemical processes. An important strength with the GRASP data is that all data is collected within the same, relatively small, catchment area. This implies that measurements are more easily linked to the right source area or process. Despite the small catchment area it includes the major units of the periglacial hydrological system; a lake, a talik, a supra- and subpermafrost aquifer and, consequently, biogeochemical processes in each of these units may be studied. The new data from GRASP is both used with the aim to increase the knowledge of present day periglacial hydrology and biogeochemistry but also in order to

Impacts of global changes on the biogeochemistry and environmental effects of dissolved organic matter at the land-ocean interface: a review.

Science.gov (United States)

Zhuang, Wan-E; Yang, Liyang

2018-02-01

Dissolved organic matter (DOM) is an important component in the biogeochemistry and ecosystem function of aquatic environments at the highly populated land-ocean interface. The mobilization and transformation of DOM at this critical interface are increasingly affected by a series of notable global changes such as the increasing storm events, intense human activities, and accelerating glacier loss. This review provides an overview of the changes in the quantity and quality of DOM under the influences of multiple global changes. The profound implications of changing DOM for aquatic ecosystem and human society are further discussed, and future research needs are suggested for filling current knowledge gaps. The fluvial export of DOM is strongly intensified during storm events, which is accompanied with notable changes in the chemical composition and reactivity of DOM. Land use not only changes the mobilization of natural DOM source pools within watersheds but also adds DOM of distinct chemical composition and reactivity from anthropogenic sources. Glacier loss brings highly biolabile DOM to downstream water bodies. The changing DOM leads to significant changes in heterotrophic activity, CO 2 out gassing, nutrient and pollutant biogeochemistry, and disinfection by-product formation. Further studies on the source, transformations, and downstream effects of storm DOM, temporal variations of DOM and its interactions with other pollutants in human-modified watersheds, photo-degradability of glacier DOM, and potential priming effects, are essential for better understanding the responses and feedbacks of DOM at the land-ocean interface under the impacts of global changes.

Exploring the ecosystem engineering ability of Red Sea shallow benthic habitats using stocks and fluxes in carbon biogeochemistry

KAUST Repository

Baldry, Kimberlee

2017-12-01

The coastal ocean is a marginal region of the global ocean, but is home to metabolically intense ecosystems which increase the structural complexity of the benthos. These ecosystems have the ability to alter the carbon chemistry of surrounding waters through their metabolism, mainly through processes which directly release or consume carbon dioxide. In this way, coastal habitats can engineer their environment by acting as sources or sinks of carbon dioxide and altering their environmental chemistry from the regional norm. In most coastal water masses, it is difficult to resolve the ecosystem effect on coastal carbon biogeochemistry due to the mixing of multiple offshore end members, complex geography or the influence of variable freshwater inputs. The Red Sea provides a simple environment for the study of ecosystem processes at a coastal scale as it contains only one offshore end-member and negligible freshwater inputs due to the arid climate of adjacent land. This work explores the ability of three Red Sea benthic coastal habitats (coral reefs, seagrass meadows and mangrove forests) to create characteristic ecosystem end-members, which deviate from the biogeochemistry of offshore source waters. This is done by both calculating non-conservative deviations in carbonate stocks collected over each ecosystem, and by quantifying net carbonate fluxes (in seagrass meadows and mangrove forests only) using 24 hour incubations. Results illustrate that carbonate stocks over ecosystems conform to broad ecosystem trends, which are different to the offshore end-member, and are influenced by inherited properties from surrounding ecosystems. Carbonate fluxes also show ecosystem dependent trends and further illustrate the importance of sediment processes in influencing CaCO3 fluxes in blue carbon benthic habitats, which warrants further attention. These findings show the respective advantages of studying both carbonate stocks and fluxes of coastal benthic ecosystems in order to

EMSL Geochemistry, Biogeochemistry and Subsurface Science-Science Theme Advisory Panel Meeting

Energy Technology Data Exchange (ETDEWEB)

Brown, Gordon E.; Chaka, Anne; Shuh, David K.; Roden, Eric E.; Werth, Charles J.; Hess, Nancy J.; Felmy, Andrew R.; Rosso, Kevin M.; Baer, Donald R.; Bailey, Vanessa L.; Bowden, Mark E.; Grate, Jay W.; Hoyt, David W.; Kuprat, Laura R.; Lea, Alan S.; Mueller, Karl T.; Oostrom, Martinus; Orr, Galya; Pasa-Tolic, Ljiljana; Plata, Charity; Robinson, E. W.; Teller, Raymond G.; Thevuthasan, Suntharampillai; Wang, Hongfei; Wiley, H. S.; Wilkins, Michael J.

2011-08-01

This report covers the topics of discussion and the recommendations of the panel members. On December 8 and 9, 2010, the Geochemistry, Biogeochemistry, and Subsurface Science (GBSS) Science Theme Advisory Panel (STAP) convened for a more in-depth exploration of the five Science Theme focus areas developed at a similar meeting held in 2009. The goal for the fiscal year (FY) 2011 meeting was to identify potential topical areas for science campaigns, necessary experimental development needs, and scientific members for potential research teams. After a review of the current science in each of the five focus areas, the 2010 STAP discussions successfully led to the identification of one well focused campaign idea in pore-scale modeling and five longer-term potential research campaign ideas that would likely require additional workshops to identify specific research thrusts. These five campaign areas can be grouped into two categories: (1) the application of advanced high-resolution, high mass accuracy experimental techniques to elucidate the interplay between geochemistry and microbial communities in terrestrial ecosystems and (2) coupled computation/experimental investigations of the electron transfer reactions either between mineral surfaces and outer membranes of microbial cells or between the outer and inner membranes of microbial cells.

Overview of the US JGOFS Bermuda Atlantic Time-series Study (BATS): a decade-scale look at ocean biology and biogeochemistry

Science.gov (United States)

Steinberg, Deborah K.; Carlson, Craig A.; Bates, Nicholas R.; Johnson, Rodney J.; Michaels, Anthony F.; Knap, Anthony H.

The Bermuda Atlantic Time-series Study (BATS) commenced monthly sampling in October 1988 as part of the US Joint Global Ocean Flux Study (JGOFS) program. The goals of the US JGOFS time-series research are to better understand the basic processes that control ocean biogeochemistry on seasonal to decadal time-scales, determine the role of the oceans in the global carbon budget, and ultimately improve our ability to predict the effects of climate change on ecosystems. The BATS program samples the ocean on a biweekly to monthly basis, a strategy that resolves major seasonal patterns and interannual variability. The core cruises last 4-5 d during which hydrography, nutrients, particle flux, pigments and primary production, bacterioplankton abundance and production, and often complementary ancillary measurements are made. This overview focuses on patterns in ocean biology and biogeochemistry over a decade at the BATS site, concentrating on seasonal and interannual changes in community structure, and the physical forcing and other factors controlling the temporal dynamics. Significant seasonal and interannual variability in phytoplankton and bacterioplankton production, biomass, and community structure exists at BATS. No strong relationship exists between primary production and particle flux during the 10 yr record, with the relationship slightly improved by applying an artificial lag of 1 week between production and flux. The prokaryotic picoplankton regularly dominate the phytoplankton community; diatom blooms are rare but occur periodically in the BATS time series. The increase in Chl a concentrations during bloom periods is due to increases by most of the taxa present, rather than by any single group, and there is seasonal succession of phytoplankton. The bacterioplankton often dominate the living biomass, indicating the potential to consume large amounts of carbon and play a major ecological role within the microbial food web. Bacterial biomass, production, and

Biogeochemistry and nitrogen cycling in an Arctic, volcanic ecosystem

Science.gov (United States)

Fogel, M. L.; Benning, L.; Conrad, P. G.; Eigenbrode, J.; Starke, V.

2007-12-01

As part of a study on Mars Analogue environments, the biogeochemistry of Sverrefjellet Volcano, Bocfjorden, Svalbard, was conducted and compared to surrounding glacial, thermal spring, and sedimentary environments. An understanding of how nitrogen might be distributed in a landscape that had extinct or very cold adapted, slow- growing extant organisms should be useful for detecting unknown life forms. From high elevations (900 m) to the base of the volcano (sea level), soil and rock ammonium concentrations were uniformly low, typically less than 1- 3 micrograms per gm of rock or soil. In weathered volcanic soils, reduced nitrogen concentrations were higher, and oxidized nitrogen concentrations lower. The opposite was found in a weathered Devonian sedimentary soil. Plants and lichens growing on volcanic soils have an unusually wide range in N isotopic compositions from -5 to +12‰, a range rarely measured in temperate ecosystems. Nitrogen contents and isotopic compositions of volcanic soils and rocks were strongly influenced by the presence or absence of terrestrial herbivores or marine avifauna with higher concentrations of N and elevated N isotopic compositions occurring as patches in areas immediately influenced by reindeer, Arctic fox ( Alopex lagopus), and marine birds. Because of the extreme conditions in this area, ephemeral deposition of herbivore feces results in a direct and immediate N pulses into the ecosystem. The lateral extent and distribution of marine- derived nitrogen was measured on a landscape scale surrounding an active fox den. Nitrogen was tracked from the bones of marine birds to soil to vegetation. Because of extreme cold, slow biological rates and nitrogen cycling, a mosaic of N patterns develops on the landscape scale.

Andean contributions to the biogeochemistry of the amazon river system

Directory of Open Access Journals (Sweden)

1995-01-01

Atlántico. Un nuevo programa colaborativo de investigación se inició en 1994 con el propósito de caracterizar de una manera más completa la biogeoquímica de los ríos andinos. Contributions from Andean rivers may play a significant role in determining the basin-wide biogeochemistry integrated into the mainstem Amazon River of Brazil. Concentration data for organic C, NO3-, and PO43- in Andean rivers are highly variable and reveal no clear spatial or altitudinal patterns. Concentrations measured in Andean rivers are similar to those reported in the mainstem Amazon river and its major tributaries. Explanations of processes which alter Andean-derived particulates and solutes as they exit the Cordillera are only speculative at this time, but their net effect is to diminish Andean signals through decomposition and dilution by lowland inputs. The 13C of particulate and dissolved organic matter in the mainstem Amazon provides evidence that some fraction of Andean derived material persists within the river system, ultimately to be discharged to the Atlantic Ocean. In 1994 a new collaborative research program was launched to further characterize the biogeochemistry of Andean rivers.

Representing Northern Peatland Hydrology and Biogeochemistry with ALM Land Surface Model

Science.gov (United States)

Shi, X.; Ricciuto, D. M.; Thornton, P. E.; Hanson, P. J.; Xu, X.; Mao, J.; Warren, J.; Yuan, F.; Norby, R. J.; Sebestyen, S.; Griffiths, N.; Weston, D. J.; Walker, A.

2017-12-01

Northern peatlands are likely to be important in future carbon cycle-climate feedbacks due to their large carbon pool and vulnerability to hydrological change. Predictive understanding of northern peatland hydrology is a necessary precursor to understanding the fate of massive carbon stores in these systems under the influence of present and future climate change. Current models have begun to address microtopographic controls on peatland hydrology, but none have included a prognostic calculation of peatland water table depth for a vegetated wetland, independent of prescribed regional water tables. Firstly, we introduce a new configuration of the land model (ALM) of Accelerated Climate model for Energy (ACME), which includes a fully prognostic water table calculation for a vegetated peatland. Secondly, we couple our new hydrology treatment with vertically structured soil organic matter pool, and the addition of components from methane biogeochemistry. Thirdly, we introduce a new PFT for mosses and implement the water content dynamics and physiology of mosses. We inform and test our model based on SPRUCE experiment to get the reasonable results for the seasonal dynamics water table depths, water content dynamics and physiology of mosses, and correct soil carbon profiles. Then, we use our new model structure to test the how the water table depth and CH4 emission will respond to elevated CO2 and different warming scenarios.

Seasonal Hydrologic Controls on Uranium and Iron Biogeochemistry in a Riparian Aquifer

Science.gov (United States)

Wilkins, M.; Williams, K. H.; Danczak, R. E.; Yabusaki, S.; Fang, Y.; Hobson, C.

2015-12-01

The maintenance of geochemically reducing conditions is generally optimal for the formation and preservation of reduced metals and mineral phases that can limit contaminant fate and transport. At a riparian aquifer near Rifle, CO, we tracked over six months the biogeochemical response within the aquifer to an annual pulse of dissolved oxygen (DO) that results from snowmelt-driven changes in Colorado River stage. In reduced portions of the aquifer (naturally reduced zones; NRZs) the re-oxidation of abundant iron sulfide minerals was the dominant oxygen-consuming process, and resulted in little DO intrusion into the deeper aquifer. In less reduced areas, DO intruded through the entire vertical profile of the aquifer. Across both regions, these perturbations resulted in changes to the microbial community structure, and aqueous metal pools. Two potentially different mechanisms of uranium mobilization were observed; (1) re-oxidation of reduced U(IV) phases in response to DO intrusion, and (2) mobilization of U(VI) from the vadose zone during water table rise. This high-resolution, long-term monitoring of aquifer biogeochemistry at the Rifle site has revealed dynamic microbial and geochemical responses to predictable, annual hydrologic perturbations, and offers an opportunity to further refine modeling approaches for such regions.

Downscaling biogeochemistry in the Benguela eastern boundary current

Science.gov (United States)

Machu, E.; Goubanova, K.; Le Vu, B.; Gutknecht, E.; Garçon, V.

2015-06-01

Dynamical downscaling is developed to better predict the regional impact of global changes in the framework of scenarios. As an intermediary step towards this objective we used the Regional Ocean Modeling System (ROMS) to downscale a low resolution coupled atmosphere-ocean global circulation model (AOGCM; IPSL-CM4) for simulating the recent-past dynamics and biogeochemistry of the Benguela eastern boundary current. Both physical and biogeochemical improvements are discussed over the present climate scenario (1980-1999) under the light of downscaling. Despite biases introduced through boundary conditions (atmospheric and oceanic), the physical and biogeochemical processes in the Benguela Upwelling System (BUS) have been improved by the ROMS model, relative to the IPSL-CM4 simulation. Nevertheless, using coarse-resolution AOGCM daily atmospheric forcing interpolated on ROMS grids resulted in a shifted SST seasonality in the southern BUS, a deterioration of the northern Benguela region and a very shallow mixed layer depth over the whole regional domain. We then investigated the effect of wind downscaling on ROMS solution. Together with a finer resolution of dynamical processes and of bathymetric features (continental shelf and Walvis Ridge), wind downscaling allowed correction of the seasonality, the mixed layer depth, and provided a better circulation over the domain and substantial modifications of subsurface biogeochemical properties. It has also changed the structure of the lower trophic levels by shifting large offshore areas from autotrophic to heterotrophic regimes with potential important consequences on ecosystem functioning. The regional downscaling also improved the phytoplankton distribution and the southward extension of low oxygen waters in the Northern Benguela. It allowed simulating low oxygen events in the northern BUS and highlighted a potential upscaling effect related to the nitrogen irrigation from the productive BUS towards the tropical

Developing an Ontology for Ocean Biogeochemistry Data

Science.gov (United States)

Chandler, C. L.; Allison, M. D.; Groman, R. C.; West, P.; Zednik, S.; Maffei, A. R.

2010-12-01

Semantic Web technologies offer great promise for enabling new and better scientific research. However, significant challenges must be met before the promise of the Semantic Web can be realized for a discipline as diverse as oceanography. Evolving expectations for open access to research data combined with the complexity of global ecosystem science research themes present a significant challenge, and one that is best met through an informatics approach. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) is funded by the National Science Foundation Division of Ocean Sciences to work with ocean biogeochemistry researchers to improve access to data resulting from their respective programs. In an effort to improve data access, BCO-DMO staff members are collaborating with researchers from the Tetherless World Constellation (Rensselaer Polytechnic Institute) to develop an ontology that formally describes the concepts and relationships in the data managed by the BCO-DMO. The project required transforming a legacy system of human-readable, flat files of metadata to well-ordered controlled vocabularies to a fully developed ontology. To improve semantic interoperability, terms from the BCO-DMO controlled vocabularies are being mapped to controlled vocabulary terms adopted by other oceanographic data management organizations. While the entire process has proven to be difficult, time-consuming and labor-intensive, the work has been rewarding and is a necessary prerequisite for the eventual incorporation of Semantic Web tools. From the beginning of the project, development of the ontology has been guided by a use case based approach. The use cases were derived from data access related requests received from members of the research community served by the BCO-DMO. The resultant ontology satisfies the requirements of the use cases and reflects the information stored in the metadata database. The BCO-DMO metadata database currently contains information that

Biogeochemistry at a wetland sediment-alluvial aquifer interface in a landfill leachate plume

Science.gov (United States)

Lorah, M.M.; Cozzarelli, I.M.; Böhlke, J.K.

2009-01-01

The biogeochemistry at the interface between sediments in a seasonally ponded wetland (slough) and an alluvial aquifer contaminated with landfill leachate was investigated to evaluate factors that can effect natural attenuation of landfill leachate contaminants in areas of groundwater/surface-water interaction. The biogeochemistry at the wetland-alluvial aquifer interface differed greatly between dry and wet conditions. During dry conditions (low water table), vertically upward discharge was focused at the center of the slough from the fringe of a landfill-derived ammonium plume in the underlying aquifer, resulting in transport of relatively low concentrations of ammonium to the slough sediments with dilution and dispersion as the primary attenuation mechanism. In contrast, during wet conditions (high water table), leachate-contaminated groundwater discharged upward near the upgradient slough bank, where ammonium concentrations in the aquifer where high. Relatively high concentrations of ammonium and other leachate constituents also were transported laterally through the slough porewater to the downgradient bank in wet conditions. Concentrations of the leachate-associated constituents chloride, ammonium, non-volatile dissolved organic carbon, alkalinity, and ferrous iron more than doubled in the slough porewater on the upgradient bank during wet conditions. Chloride, non-volatile dissolved organic carbon (DOC), and bicarbonate acted conservatively during lateral transport in the aquifer and slough porewater, whereas ammonium and potassium were strongly attenuated. Nitrogen isotope variations in ammonium and the distribution of ammonium compared to other cations indicated that sorption was the primary attenuation mechanism for ammonium during lateral transport in the aquifer and the slough porewater. Ammonium attenuation was less efficient, however, in the slough porewater than in the aquifer and possibly occurred by a different sorption mechanism. A

Amino Acid Enantiomeric Ratios in Biogeochemistry: Complications and Opportunities

Science.gov (United States)

McDonald, G. D.; Sun, H. J.; Tsapin, A. I.

2003-12-01

Amino acid enantiomeric ratios have been used for many years as an indicator of the process of racemization, and thus as a method to determine the age of biological samples such as bones, shells, and teeth. Dating biological samples by this method relies on an accurate knowledge of the environmental temperatures the sample has experienced, and the racemization kinetic parameters in the sample matrix. In some environments, where an independent dating method such as radiocarbon is available, the observed amino acid D/L ratios are found to be either higher or lower than those expected due to racemization alone. The observed D/L ratios in these cases can be clues to biogeochemical processes operating in addition to, or in place of, chemical racemization. In Siberian permafrost (Brinton et al. 2002, Astrobiology 2, 77) we have found D/L ratios lower than expected, which we have interpreted as evidence for low-level D-amino acid metabolism and recycling in microorganisms previously thought to be metabolically dormant. In microbially-colonized Antarctic Dry Valley sandstones (McDonald and Sun 2002, Eos Trans. AGU 83, Fall Meet. Suppl., Abstract B11A-0720) we have found D/L ratios higher than can be accounted for by racemization alone, most likely due to the accumulation of D-amino-acid-containing peptidoglycan material from multiple bacterial generations. D/L profiles in polar ices and in ice-covered lakes (Tsapin et al. 2002, Astrobiology 2, 632) can be used to indicate the sources and histories of water or ice samples. Multiple biological and biogeochemical processes may complicate the interpretation of amino acid enantiomeric excesses in both terrestrial and extraterrestrial samples; however, amino acid racemization remains a useful tool in biogeochemistry and astrobiology. With a good knowledge of the environmental history of samples, amino acid D/L profiles can be used as a window into processes such as molecular repair and biomass turnover that are difficult to

Effects of coexistence between the blue mussel Mytilus edulis and eelgrass Zostera marina on sediment biogeochemistry and plant performance

DEFF Research Database (Denmark)

Vinther, H.F.; Norling, P.; Kristensen, Per Sand

2012-01-01

The habitat-modifying suspension-feeding mussel, Mytilus edulis, may have facilitating or inhibiting effects on seagrass meadows depending on the environmental conditions. We investigated the effects of M. edulis on sediment biogeochemistry in Zostera marina meadows under eutrophic conditions...... in Flensborg fjord, Denmark. Sediment and plant samples were collected at ten stations; five with Z. marina (Eelgrass) and five with Z. marina and M. edulis (Mixed) and at two unvegetated stations; one with mussels (Mussel) and one with sand (Sand). The Mixed sediment was enriched in fine particles (2-3 times...... significantly reduced at Mixed stations suggesting inhibiting effect of M. edulis on Z. marina. Negative correlations between eelgrass measures and sediment sulphide at Mixed stations indicate that presence of mussels increase sulphide invasion in the plants. A survey of 318 stations in Danish fjords suggests...

Proceedings of the 6. International Conference on the Biogeochemistry of Trace Elements. CD ed.

Energy Technology Data Exchange (ETDEWEB)

NONE

2001-07-01

This international conference provided a forum for researchers from around the world to exchange research notes of subjects dealing with the biogeochemistry of trace elements. The conference proceedings included 456 papers, of which 34 have been indexed separately for inclusion in the database. Each presentation included an introduction to a study, materials and methods, results and discussion and a conclusion. The conference was divided into special oral symposia (SO), general oral sessions (GO), a special poster session (SP) and a general poster session (GP). A wide range of topics were presented including: biosorption of trace elements and the bioavailability of metals for uptake and effects; chemical remediation; adsorption reactions on soils and sediments; fractionation of metals in soils; diagenetic transformations; arsenic content and distribution; metal speciation; the role of metal-organic interactions; phytoremediation; contents and distribution in soils and waters; soil amendments; mercury and human and animal health; mercury in the environment; aqueous speciation; phyto-, microbial and chemical remediation tools for metal contaminated soils and groundwater; geochemical surface controls on trace element fate; temporal trends of trace metals in biota; biomonitoring; transport in soils and waters; analytical techniques; metal/mineral interactions with microorganisms; the chemistry of trace elements in fly ash; ecotoxicology; groundwater; and, soil amendments. refs., tabs., figs.

Exploring Biogeochemistry and Microbial Diversity of Extant Microbialites in Mexico and Cuba

Science.gov (United States)

Valdespino-Castillo, Patricia M.; Hu, Ping; Merino-Ibarra, Martín; López-Gómez, Luz M.; Cerqueda-García, Daniel; González-De Zayas, Roberto; Pi-Puig, Teresa; Lestayo, Julio A.; Holman, Hoi-Ying; Falcón, Luisa I.

2018-01-01

Microbialites are modern analogs of ancient microbial consortia that date as far back as the Archaean Eon. Microbialites have contributed to the geochemical history of our planet through their diverse metabolic capacities that mediate mineral precipitation. These mineral-forming microbial assemblages accumulate major ions, trace elements and biomass from their ambient aquatic environments; their role in the resulting chemical structure of these lithifications needs clarification. We studied the biogeochemistry and microbial structure of microbialites collected from diverse locations in Mexico and in a previously undescribed microbialite in Cuba. We examined their structure, chemistry and mineralogy at different scales using an array of nested methods including 16S rRNA gene high-throughput sequencing, elemental analysis, X-Ray fluorescence (XRF), X-Ray diffraction (XRD), Scanning Electron Microscopy-Energy Dispersive Spectroscopy (SEM-EDS), Fourier Transformed Infrared (FTIR) spectroscopy and Synchrotron Radiation-based Fourier Transformed Infrared (SR-FTIR) spectromicroscopy. The resulting data revealed high biological and chemical diversity among microbialites and specific microbe to chemical correlations. Regardless of the sampling site, Proteobacteria had the most significant correlations with biogeochemical parameters such as organic carbon (Corg), nitrogen and Corg:Ca ratio. Biogeochemically relevant bacterial groups (dominant phototrophs and heterotrophs) showed significant correlations with major ion composition, mineral type and transition element content, such as cadmium, cobalt, chromium, copper and nickel. Microbial-chemical relationships were discussed in reference to microbialite formation, microbial metabolic capacities and the role of transition elements as enzyme cofactors. This paper provides an analytical baseline to drive our understanding of the links between microbial diversity with the chemistry of their lithified precipitations. PMID

Coupled eco-hydrology and biogeochemistry algorithms enable the simulation of water table depth effects on boreal peatland net CO2 exchange

Science.gov (United States)

Mezbahuddin, Mohammad; Grant, Robert F.; Flanagan, Lawrence B.

2017-12-01

Water table depth (WTD) effects on net ecosystem CO2 exchange of boreal peatlands are largely mediated by hydrological effects on peat biogeochemistry and the ecophysiology of peatland vegetation. The lack of representation of these effects in carbon models currently limits our predictive capacity for changes in boreal peatland carbon deposits under potential future drier and warmer climates. We examined whether a process-level coupling of a prognostic WTD with (1) oxygen transport, which controls energy yields from microbial and root oxidation-reduction reactions, and (2) vascular and nonvascular plant water relations could explain mechanisms that control variations in net CO2 exchange of a boreal fen under contrasting WTD conditions, i.e., shallow vs. deep WTD. Such coupling of eco-hydrology and biogeochemistry algorithms in a process-based ecosystem model, ecosys, was tested against net ecosystem CO2 exchange measurements in a western Canadian boreal fen peatland over a period of drier-weather-driven gradual WTD drawdown. A May-October WTD drawdown of ˜ 0.25 m from 2004 to 2009 hastened oxygen transport to microbial and root surfaces, enabling greater microbial and root energy yields and peat and litter decomposition, which raised modeled ecosystem respiration (Re) by 0.26 µmol CO2 m-2 s-1 per 0.1 m of WTD drawdown. It also augmented nutrient mineralization, and hence root nutrient availability and uptake, which resulted in improved leaf nutrient (nitrogen) status that facilitated carboxylation and raised modeled vascular gross primary productivity (GPP) and plant growth. The increase in modeled vascular GPP exceeded declines in modeled nonvascular (moss) GPP due to greater shading from increased vascular plant growth and moss drying from near-surface peat desiccation, thereby causing a net increase in modeled growing season GPP by 0.39 µmol CO2 m-2 s-1 per 0.1 m of WTD drawdown. Similar increases in GPP and Re caused no significant WTD effects on modeled

Biogeochemistry and community ecology in a spring-fed urban river following a major earthquake

International Nuclear Information System (INIS)

Wells, Naomi S.; Clough, Tim J.; Condron, Leo M.; Baisden, W. Troy; Harding, Jon S.; Dong, Y.; Lewis, G.D.; Lear, Gavin

2013-01-01

In February 2011 a M W 6.3 earthquake in Christchurch, New Zealand inundated urban waterways with sediment from liquefaction and triggered sewage spills. The impacts of, and recovery from, this natural disaster on the stream biogeochemistry and biology were assessed over six months along a longitudinal impact gradient in an urban river. The impact of liquefaction was masked by earthquake triggered sewage spills (∼20,000 m 3 day −1 entering the river for one month). Within 10 days of the earthquake dissolved oxygen in the lowest reaches was −1 , in-stream denitrification accelerated (attenuating 40–80% of sewage nitrogen), microbial biofilm communities changed, and several benthic invertebrate taxa disappeared. Following sewage system repairs, the river recovered in a reverse cascade, and within six months there were no differences in water chemistry, nutrient cycling, or benthic communities between severely and minimally impacted reaches. This study highlights the importance of assessing environmental impact following urban natural disasters. -- Highlights: •Earthquakes triggered sewage spills and liquefaction into an urban river. •Combined chemical, isotopic, and biological measurements to quantify stream recovery. •Sustained sewage discharge into the river drove eutrophication in lower reaches. •River function recovered in a reverse cascade, from chemical to macroinvertebrate. -- Linking stream community ecology with biogeochemical function, we provide an in-depth quantification of urban stream recovery following a catastrophic earthquake

Sargasso Sea phosphorus biogeochemistry: an important role for dissolved organic phosphorus (DOP

Directory of Open Access Journals (Sweden)

M. W. Lomas

2010-02-01

Full Text Available Inorganic phosphorus (SRP concentrations in the subtropical North Atlantic are some of the lowest in the global ocean and have been hypothesized to constrain primary production. Based upon data from several transect cruises in this region, it has been hypothesized that dissolved organic phosphorus (DOP supports a significant fraction of primary production in the subtropical North Atlantic. In this study, a time-series of phosphorus biogeochemistry is presented for the Bermuda Atlantic Time-series Study site, including rates of phosphorus export. Most parameters have a seasonal pattern, although year-over-year variability in the seasonal pattern is substantial, likely due to differences in external forcing. Suspended particulate phosphorus exhibits a seasonal maximum during the spring bloom, despite the absence of a seasonal peak in SRP. However, DOP concentrations are at an annual maximum prior to the winter/spring bloom and decline over the course of the spring bloom while whole community alkaline phosphatase activities are highest. As a result of DOP bioavailability, the growth of particles during the spring bloom occurs in Redfield proportions, though particles exported from the euphotic zone show rapid and significant remineralization of phosphorus within the first 50 m below the euphotic zone. Based upon DOP data from transect cruises in this region, the southward cross gyral flux of DOP is estimated to support ~25% of annual primary production and ~100% of phosphorus export. These estimates are consistent with other research in the subtropical North Atlantic and reinforce the hypothesis that while the subtropics may be phosphorus stressed (a physiological response to low inorganic phosphorus, utilization of the DOP pool allows production and accumulation of microbial biomass at Redfield proportions.

Coupled eco-hydrology and biogeochemistry algorithms enable the simulation of water table depth effects on boreal peatland net CO2 exchange

Directory of Open Access Journals (Sweden)

M. Mezbahuddin

2017-12-01

Full Text Available Water table depth (WTD effects on net ecosystem CO2 exchange of boreal peatlands are largely mediated by hydrological effects on peat biogeochemistry and the ecophysiology of peatland vegetation. The lack of representation of these effects in carbon models currently limits our predictive capacity for changes in boreal peatland carbon deposits under potential future drier and warmer climates. We examined whether a process-level coupling of a prognostic WTD with (1 oxygen transport, which controls energy yields from microbial and root oxidation–reduction reactions, and (2 vascular and nonvascular plant water relations could explain mechanisms that control variations in net CO2 exchange of a boreal fen under contrasting WTD conditions, i.e., shallow vs. deep WTD. Such coupling of eco-hydrology and biogeochemistry algorithms in a process-based ecosystem model, ecosys, was tested against net ecosystem CO2 exchange measurements in a western Canadian boreal fen peatland over a period of drier-weather-driven gradual WTD drawdown. A May–October WTD drawdown of  ∼  0.25 m from 2004 to 2009 hastened oxygen transport to microbial and root surfaces, enabling greater microbial and root energy yields and peat and litter decomposition, which raised modeled ecosystem respiration (Re by 0.26 µmol CO2 m−2 s−1 per 0.1 m of WTD drawdown. It also augmented nutrient mineralization, and hence root nutrient availability and uptake, which resulted in improved leaf nutrient (nitrogen status that facilitated carboxylation and raised modeled vascular gross primary productivity (GPP and plant growth. The increase in modeled vascular GPP exceeded declines in modeled nonvascular (moss GPP due to greater shading from increased vascular plant growth and moss drying from near-surface peat desiccation, thereby causing a net increase in modeled growing season GPP by 0.39 µmol CO2 m−2 s−1 per 0.1 m of WTD drawdown. Similar increases in

Comparing the Influence of Wildfire and Prescribed Burns on Watershed Nitrogen Biogeochemistry Using 15N Natural Abundance in Terrestrial and Aquatic Ecosystem Components

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Stephan, Kirsten; Kavanagh, Kathleen L.; Koyama, Akihiro

2015-01-01

We evaluated differences in the effects of three low-severity spring prescribed burns and four wildfires on nitrogen (N) biogeochemistry in Rocky Mountain headwater watersheds. We compared paired (burned/unburned) watersheds of four wildfires and three spring prescribed burns for three growing seasons post-fire. To better understand fire effects on the entire watershed ecosystem, we measured N concentrations and δ15N in both the terrestrial and aquatic ecosystems components, i.e., soil, understory plants in upland and riparian areas, streamwater, and in-stream moss. In addition, we measured nitrate reductase activity in foliage of Spiraea betulifolia, a dominant understory species. We found increases of δ15N and N concentrations in both terrestrial and aquatic ecosystem N pools after wildfire, but responses were limited to terrestrial N pools after prescribed burns indicating that N transfer from terrestrial to aquatic ecosystem components did not occur in low-severity prescribed burns. Foliar δ15N differed between wildfire and prescribed burn sites; the δ15N of foliage of upland plants was enriched by 2.9 ‰ (difference between burned and unburned watersheds) in the first two years after wildfire, but only 1.3 ‰ after prescribed burns. In-stream moss δ15N in wildfire-burned watersheds was enriched by 1.3 ‰, but there was no response by moss in prescription-burned watersheds, mirroring patterns of streamwater nitrate concentrations. S. betulifolia showed significantly higher nitrate reductase activity two years after wildfires relative to corresponding unburned watersheds, but no such difference was found after prescribed burns. These responses are consistent with less altered N biogeochemistry after prescribed burns relative to wildfire. We concluded that δ15N values in terrestrial and aquatic plants and streamwater nitrate concentrations after fire can be useful indicators of the magnitude and duration of fire effects and the fate of post

Fungal-to-bacterial dominance of soil detrital food-webs: Consequences for biogeochemistry

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Rousk, Johannes; Frey, Serita

2015-04-01

Resolving fungal and bacterial groups within the microbial decomposer community is thought to capture disparate microbial life strategies, associating bacteria with an r-selected strategy for carbon (C) and nutrient use, and fungi with a K-selected strategy. Additionally, food-web models have established a widely held belief that the bacterial decomposer pathway in soil supports high turnover rates of easily available substrates, while the slower fungal pathway supports the decomposition of more complex organic material, thus characterising the biogeochemistry of the ecosystem. Three field-experiments to generate gradients of SOC-quality were assessed. (1) the Detritus Input, Removal, and Trenching - DIRT - experiment in a temperate forest in mixed hardwood stands at Harvard Forest LTER, US. There, experimentally adjusted litter input and root input had affected the SOC quality during 23 years. (2) field-application of 14-C labelled glucose to grassland soils, sampled over the course of 13 months to generate an age-gradient of SOM (1 day - 13 months). (3) The Park Grass Experiment at Rothamsted, UK, where 150-years continuous N-fertilisation (0, 50, 100, 150 kg N ha-1 y-1) has affected the quality of SOM in grassland soils. A combination of carbon stable and radio isotope studies, fungal and bacterial growth and biomass measurements, and C and N mineralisation (15N pool dilution) assays were used to investigate how SOC-quality influenced fungal and bacterial food-web pathways and the implications this had for C and nutrient turnover. There was no support that decomposer food-webs dominated by bacteria support high turnover rates of easily available substrates, while slower fungal-dominated decomposition pathways support the decomposition of more complex organic material. Rather, an association between high quality SOC and fungi emerges from the results. This suggests that we need to revise our basic understanding for soil microbial communities and the processes

BIBLE A whole-air sampling as a window on Asian biogeochemistry

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Elliott, Scott; Blake, Donald R.; Blake, Nicola J.; Dubey, Manvendra K.; Rowland, F. Sherwood; Sive, Barkley C.; Smith, Felisa A.

2003-02-01

Asian trace gas and aerosol emissions into carbon, nitrogen, and other elemental cycles will figure prominently in near term Earth system evolution. Atmospheric hydrocarbon measurements resolve numerous chemical species and can be used to investigate sourcing for key geocarriers. A recent aircraft study of biomass burning and lightning (BIBLE A) explored the East Asian atmosphere and was unique in centering on the Indonesian archipelago. Samples of volatile organics taken over/between the islands of Japan, Saipan, Java, and Borneo are here examined as a guide to whole-air-based studies of future Asian biogeochemistry. The midlatitude onshore/offshore pulse and tropical convection strongly influence concentration distributions. As species of increasing molecular weight are considered, rural, combustion, and industrial source regimes emerge. Methane-rich inputs such as waste treatment and rice cultivation are evidenced in the geostrophic outflow. The Indonesian atmosphere is rich in biomass burning markers and also those of vehicular activity. Complexity of air chemistry in the archipelago is a direct reflection of diverse topography, land use, and local economies in a rapidly developing nation. Conspicuous in its absence is the fingerprint for liquefied petroleum gas leakage, but it can be expected to appear as demand for clean fossil fuels rises along with per capita incomes. Combustion tracers indicate high nitrogen mobilization rates, linking regional terrestrial geocycles with open marine ecosystems. Sea to air fluxes are superimposed on continental and marine backgrounds for the methyl halides. However, ocean hot spots are not coordinated and suggest an intricate subsurface kinetics. Levels of long-lived anthropogenic halocarbons attest to the success of international environmental treaties while reactive chlorine containing species track industrial air masses. The dozens of hydrocarbons resolvable by gas chromatographic methods will enable monitoring of

Sea ice thermohaline dynamics and biogeochemistry in the Arctic Ocean: Empirical and model results

Science.gov (United States)

Duarte, Pedro; Meyer, Amelie; Olsen, Lasse M.; Kauko, Hanna M.; Assmy, Philipp; Rösel, Anja; Itkin, Polona; Hudson, Stephen R.; Granskog, Mats A.; Gerland, Sebastian; Sundfjord, Arild; Steen, Harald; Hop, Haakon; Cohen, Lana; Peterson, Algot K.; Jeffery, Nicole; Elliott, Scott M.; Hunke, Elizabeth C.; Turner, Adrian K.

2017-07-01

Large changes in the sea ice regime of the Arctic Ocean have occurred over the last decades justifying the development of models to forecast sea ice physics and biogeochemistry. The main goal of this study is to evaluate the performance of the Los Alamos Sea Ice Model (CICE) to simulate physical and biogeochemical properties at time scales of a few weeks and to use the model to analyze ice algal bloom dynamics in different types of ice. Ocean and atmospheric forcing data and observations of the evolution of the sea ice properties collected from 18 April to 4 June 2015, during the Norwegian young sea ICE expedition, were used to test the CICE model. Our results show the following: (i) model performance is reasonable for sea ice thickness and bulk salinity; good for vertically resolved temperature, vertically averaged Chl a concentrations, and standing stocks; and poor for vertically resolved Chl a concentrations. (ii) Improving current knowledge about nutrient exchanges, ice algal recruitment, and motion is critical to improve sea ice biogeochemical modeling. (iii) Ice algae may bloom despite some degree of basal melting. (iv) Ice algal motility driven by gradients in limiting factors is a plausible mechanism to explain their vertical distribution. (v) Different ice algal bloom and net primary production (NPP) patterns were identified in the ice types studied, suggesting that ice algal maximal growth rates will increase, while sea ice vertically integrated NPP and biomass will decrease as a result of the predictable increase in the area covered by refrozen leads in the Arctic Ocean.

Riparian zone hydrology and biogeochemistry as a function of stream evolution stage in glaciated landscapes of the US Northeast

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Rook, S. P.; Vidon, P.; Walter, M. T.

2011-12-01

The management of riparian buffer strips is often regarded as one of the most economical and sustainable methods of managing non-point source pollution and water quality. However, current riparian management often follows a 'one size fits all' design, which fails to recognize the complexity of the many biogeochemical processes that regulate pollutant transformation and retention in these systems. This study addresses two critical gaps in knowledge: (1) How carbon, nitrogen, phosphorous, and iron cycles interact with one another (rather than individually). (2) How stream channel geometry and evolution regulate these nutrient cycles and greenhouse gas (GHG) dynamics in the near stream zone. This project specifically explores the hydrological and biogeochemical functioning of riparian zones across a gradient of stream meander evolution stages, with the primary goal of understanding and predicting potential interactions between nutrient dynamics in these systems. Key research questions include: (1) How does stream meander curvature affect riparian zone hydrology? (2) How does stream meander curvature influence riparian zone biogeochemistry? (3) What relationships exist among N, P, Fe, and GHG dynamics? We instrumented three riparian sites near Ithaca, NY, with a dense network of wells, piezometers, and static chambers. These sites represent three riparian zones along three evolution stages of stream meanders: an inner meander, a straight stream section, and an outer bend of the stream with an oxbow lake formation. In spring through fall 2011, water samples and gas samples were collected at a tri-weekly bases at each of the three sites. Water samples were analyzed for oxidation-reduction potential, dissolved oxygen, temperature, FeII/FeIII, nutrients (NO3-, NH4+, PO43-) and dissolved organic carbon (DOC). GHG fluxes at the soil-atmosphere interface were measured for N2O, CO2, and CH4 gases. We predict that stream curvature will significantly affect groundwater flow

From lake to estuary, the tale of two waters: a study of aquatic continuum biogeochemistry.

Science.gov (United States)

Julian, Paul; Osborne, Todd Z

2018-01-25

The balance of fresh and saline water is essential to estuarine ecosystem function. Along the fresh-brackish-saline water gradient within the C-43 canal/Caloosahatchee River Estuary (CRE), the quantity, timing and distribution of water, and associated water quality significantly influence ecosystem function. Long-term trends of water quality and quantity were assessed from Lake Okeechobee to the CRE between May 1978 and April 2016. Significant changes to monthly flow volumes were detected between the lake and the estuary which correspond to changes in upstream management. and climatic events. Across the 37-year period, total phosphorus (TP) flow-weighted mean (FWM) concentration significantly increased at the lake; meanwhile, total nitrogen (TN) FMW concentrations significantly declined at both the lake and estuary headwaters. Between May 1999 and April 2016, TN, TP, and total organic carbon (TOC), ortho-P, and ammonium conditions were assessed within the estuary at several monitoring locations. Generally, nutrient concentrations decreased from upstream to downstream with shifts in TN/TP from values > 20 in the freshwater portion, ~ 20 in the estuarine portion, and estuary is net heterotrophic with productivity being negatively influenced by TP, TN, and TOC likely due to a combination of effects including shading by high color dissolved organic matter. We conclude that rainfall patterns, land use, and the resulting discharges of runoff drive the ecology of the C-43/CRE aquatic continuum and associated biogeochemistry rather than water management associated with Lake Okeechobee.

Complex functionality with minimal computation: Promise and pitfalls of reduced-tracer ocean biogeochemistry models

Science.gov (United States)

Galbraith, Eric D.; Dunne, John P.; Gnanadesikan, Anand; Slater, Richard D.; Sarmiento, Jorge L.; Dufour, Carolina O.; de Souza, Gregory F.; Bianchi, Daniele; Claret, Mariona; Rodgers, Keith B.; Marvasti, Seyedehsafoura Sedigh

2015-12-01

Earth System Models increasingly include ocean biogeochemistry models in order to predict changes in ocean carbon storage, hypoxia, and biological productivity under climate change. However, state-of-the-art ocean biogeochemical models include many advected tracers, that significantly increase the computational resources required, forcing a trade-off with spatial resolution. Here, we compare a state-of-the art model with 30 prognostic tracers (TOPAZ) with two reduced-tracer models, one with 6 tracers (BLING), and the other with 3 tracers (miniBLING). The reduced-tracer models employ parameterized, implicit biological functions, which nonetheless capture many of the most important processes resolved by TOPAZ. All three are embedded in the same coupled climate model. Despite the large difference in tracer number, the absence of tracers for living organic matter is shown to have a minimal impact on the transport of nutrient elements, and the three models produce similar mean annual preindustrial distributions of macronutrients, oxygen, and carbon. Significant differences do exist among the models, in particular the seasonal cycle of biomass and export production, but it does not appear that these are necessary consequences of the reduced tracer number. With increasing CO2, changes in dissolved oxygen and anthropogenic carbon uptake are very similar across the different models. Thus, while the reduced-tracer models do not explicitly resolve the diversity and internal dynamics of marine ecosystems, we demonstrate that such models are applicable to a broad suite of major biogeochemical concerns, including anthropogenic change. These results are very promising for the further development and application of reduced-tracer biogeochemical models that incorporate "sub-ecosystem-scale" parameterizations.

Integrating Hydrology, Ecology, and Biogeochemistry in Stormwater Management: the Vermont Experience

Science.gov (United States)

Bowden, W. B.

2005-12-01

achieve these targets. This approach is firmly grounded in first principles of stormwater hydrology and recognition of the impacts of altered hydrology on stream ecology and biogeochemistry. Stakeholders have accepted the approach because it is objective, defensible, and subject to future, quantitative analysis and adjustment (adaptive management). This approach is not specific to Vermont and could be employed in any region.

Modeling Global Ocean Biogeochemistry With Physical Data Assimilation: A Pragmatic Solution to the Equatorial Instability

Science.gov (United States)

Park, Jong-Yeon; Stock, Charles A.; Yang, Xiaosong; Dunne, John P.; Rosati, Anthony; John, Jasmin; Zhang, Shaoqing

2018-03-01

Reliable estimates of historical and current biogeochemistry are essential for understanding past ecosystem variability and predicting future changes. Efforts to translate improved physical ocean state estimates into improved biogeochemical estimates, however, are hindered by high biogeochemical sensitivity to transient momentum imbalances that arise during physical data assimilation. Most notably, the breakdown of geostrophic constraints on data assimilation in equatorial regions can lead to spurious upwelling, resulting in excessive equatorial productivity and biogeochemical fluxes. This hampers efforts to understand and predict the biogeochemical consequences of El Niño and La Niña. We develop a strategy to robustly integrate an ocean biogeochemical model with an ensemble coupled-climate data assimilation system used for seasonal to decadal global climate prediction. Addressing spurious vertical velocities requires two steps. First, we find that tightening constraints on atmospheric data assimilation maintains a better equatorial wind stress and pressure gradient balance. This reduces spurious vertical velocities, but those remaining still produce substantial biogeochemical biases. The remainder is addressed by imposing stricter fidelity to model dynamics over data constraints near the equator. We determine an optimal choice of model-data weights that removed spurious biogeochemical signals while benefitting from off-equatorial constraints that still substantially improve equatorial physical ocean simulations. Compared to the unconstrained control run, the optimally constrained model reduces equatorial biogeochemical biases and markedly improves the equatorial subsurface nitrate concentrations and hypoxic area. The pragmatic approach described herein offers a means of advancing earth system prediction in parallel with continued data assimilation advances aimed at fully considering equatorial data constraints.

Biotic and human vulnerability to projected changes in ocean biogeochemistry over the 21st century.

Science.gov (United States)

Mora, Camilo; Wei, Chih-Lin; Rollo, Audrey; Amaro, Teresa; Baco, Amy R; Billett, David; Bopp, Laurent; Chen, Qi; Collier, Mark; Danovaro, Roberto; Gooday, Andrew J; Grupe, Benjamin M; Halloran, Paul R; Ingels, Jeroen; Jones, Daniel O B; Levin, Lisa A; Nakano, Hideyuki; Norling, Karl; Ramirez-Llodra, Eva; Rex, Michael; Ruhl, Henry A; Smith, Craig R; Sweetman, Andrew K; Thurber, Andrew R; Tjiputra, Jerry F; Usseglio, Paolo; Watling, Les; Wu, Tongwen; Yasuhara, Moriaki

2013-10-01

Ongoing greenhouse gas emissions can modify climate processes and induce shifts in ocean temperature, pH, oxygen concentration, and productivity, which in turn could alter biological and social systems. Here, we provide a synoptic global assessment of the simultaneous changes in future ocean biogeochemical variables over marine biota and their broader implications for people. We analyzed modern Earth System Models forced by greenhouse gas concentration pathways until 2100 and showed that the entire world's ocean surface will be simultaneously impacted by varying intensities of ocean warming, acidification, oxygen depletion, or shortfalls in productivity. In contrast, only a small fraction of the world's ocean surface, mostly in polar regions, will experience increased oxygenation and productivity, while almost nowhere will there be ocean cooling or pH elevation. We compiled the global distribution of 32 marine habitats and biodiversity hotspots and found that they would all experience simultaneous exposure to changes in multiple biogeochemical variables. This superposition highlights the high risk for synergistic ecosystem responses, the suite of physiological adaptations needed to cope with future climate change, and the potential for reorganization of global biodiversity patterns. If co-occurring biogeochemical changes influence the delivery of ocean goods and services, then they could also have a considerable effect on human welfare. Approximately 470 to 870 million of the poorest people in the world rely heavily on the ocean for food, jobs, and revenues and live in countries that will be most affected by simultaneous changes in ocean biogeochemistry. These results highlight the high risk of degradation of marine ecosystems and associated human hardship expected in a future following current trends in anthropogenic greenhouse gas emissions.

Imprint of past and present environmental conditions on microbiology and biogeochemistry of coastal Quaternary sediments

Directory of Open Access Journals (Sweden)

M. Beck

2011-01-01

Full Text Available To date, North Sea tidal-flat sediments have been intensively studied down to a depth of 5 m below seafloor (mbsf. However, little is known about the biogeochemistry, microbial abundance, and activity of sulfate reducers as well as methanogens in deeper layers. In this study, two 20 m-long cores were retrieved from the tidal-flat area of Spiekeroog Island, NW Germany. The drill sites were selected with a close distance of 900 m allowing to compare two depositional settings: first, a paleo-channel filled with Holocene sediments and second, a mainly Pleistocene sedimentary succession. Analyzing these cores, we wanted to test to which degree the paleo-environmental imprint is superimposed by present processes.

In general, the numbers of bacterial 16S rRNA genes are one to two orders of magnitude higher than those of Archaea. The abundances of key genes for sulfate reduction and methanogenesis (dsrA and mcrA correspond to the sulfate and methane profiles. A co-variance of these key genes at sulfate-methane interfaces and enhanced ex situ AOM rates suggest that anaerobic oxidation of methane may occur in these layers. Microbial and biogeochemical profiles are vertically stretched relative to 5 m-deep cores from shallower sediments in the same study area, but still appear compressed compared to deep sea sediments. Our interdisciplinary analysis shows that the microbial abundances and metabolic rates are elevated in the Holocene compared to Pleistocene sediments. However, this is mainly due to present environmental conditions such as pore water flow and organic matter availability. The paleo-environmental imprint is still visible but superimposed by these processes.

Biotic and human vulnerability to projected changes in ocean biogeochemistry over the 21st century.

Directory of Open Access Journals (Sweden)

Camilo Mora

2013-10-01

Full Text Available Ongoing greenhouse gas emissions can modify climate processes and induce shifts in ocean temperature, pH, oxygen concentration, and productivity, which in turn could alter biological and social systems. Here, we provide a synoptic global assessment of the simultaneous changes in future ocean biogeochemical variables over marine biota and their broader implications for people. We analyzed modern Earth System Models forced by greenhouse gas concentration pathways until 2100 and showed that the entire world's ocean surface will be simultaneously impacted by varying intensities of ocean warming, acidification, oxygen depletion, or shortfalls in productivity. In contrast, only a small fraction of the world's ocean surface, mostly in polar regions, will experience increased oxygenation and productivity, while almost nowhere will there be ocean cooling or pH elevation. We compiled the global distribution of 32 marine habitats and biodiversity hotspots and found that they would all experience simultaneous exposure to changes in multiple biogeochemical variables. This superposition highlights the high risk for synergistic ecosystem responses, the suite of physiological adaptations needed to cope with future climate change, and the potential for reorganization of global biodiversity patterns. If co-occurring biogeochemical changes influence the delivery of ocean goods and services, then they could also have a considerable effect on human welfare. Approximately 470 to 870 million of the poorest people in the world rely heavily on the ocean for food, jobs, and revenues and live in countries that will be most affected by simultaneous changes in ocean biogeochemistry. These results highlight the high risk of degradation of marine ecosystems and associated human hardship expected in a future following current trends in anthropogenic greenhouse gas emissions.

Anaerobic biodegradation of dissolved ethanol in a pilot-scale sand aquifer: Variability in plume (redox) biogeochemistry

Science.gov (United States)

McLeod, Heather C.; Roy, James W.; Slater, Gregory F.; Smith, James E.

2018-01-01

The use of ethanol in alternative fuels has led to contamination of groundwater with high concentrations of this easily biodegradable organic compound. Previous laboratory and field studies have shown vigorous biodegradation of ethanol plumes, with prevalence of reducing conditions and methanogenesis. The objective of this study was to further our understanding of the dynamic biogeochemistry processes, especially dissolved gas production, that may occur in developing and aging plume cores at sites with ethanol or other organic contamination of groundwater. The experiment performed involved highly-detailed spatial and temporal monitoring of ethanol biodegradation in a 2-dimensional (175 cm high × 525 cm long) sand aquifer tank for 330 days, with a vertical shift in plume position and increased nutrient inputs occurring at Day 100. Rapid onset of fermentation, denitrification, sulphate-reduction and iron(III)-reduction occurred following dissolved ethanol addition, with the eventual widespread development of methanogenesis. The detailed observations also demonstrate a redox zonation that supports the plume fringe concept, secondary reactions resulting from a changing/moving plume, and time lags for the various biodegradation processes. Additional highlights include: i) the highest dissolved H2 concentrations yet reported for groundwater, possibly linked to vigorous fermentation in the absence of common terminal electron-acceptors (i.e., dissolved oxygen, nitrate, and sulphate, and iron(III)-minerals) and methanogenesis; ii) evidence of phosphorus nutrient limitation, which stalled ethanol biodegradation and perhaps delayed the onset of methanogenesis; and iii) the occurrence of dissimilatory nitrate reduction to ammonium, which has not been reported for ethanol biodegradation to date.

Nitrogen biogeochemistry in the Adirondack Mountains of New York: hardwood ecosystems and associated surface waters

International Nuclear Information System (INIS)

Mitchell, Myron J.; Driscoll, Charles T.; Inamdar, Shreeram; McGee, Greg G.; Mbila, Monday O.; Raynal, Dudley J.

2003-01-01

Factors that regulate the fate of atmospherically deposited nitrogen to hardwood forests and subsequent transport to surface waters in the Adirondack region of New York are described. - Studies on the nitrogen (N) biogeochemistry in Adirondack northern hardwood ecosystems were summarized. Specific focus was placed on results at the Huntington Forest (HFS), Pancake-Hall Creek (PHC), Woods Lake (WL), Ampersand (AMO), Catlin Lake (CLO) and Hennessy Mountain (HM). Nitrogen deposition generally decreased from west to east in the Adirondacks, and there have been no marked temporal changes in N deposition from 1978 through 1998. Second-growth western sites (WL, PHC) had higher soil solution NO 3 - concentrations and fluxes than the HFS site in the central Adirondacks. Of the two old-growth sites (AMO and CLO), AMO had substantially higher NO 3 - concentrations due to the relative dominance of sugar maple that produced litter with high N mineralization and nitrification rates. The importance of vegetation in affecting N losses was also shown for N-fixing alders in wetlands. The Adirondack Manipulation and Modeling Project (AMMP) included separate experimental N additions of (NH 4 ) 2 SO 4 at WL, PHC and HFS and HNO 3 at WL and HFS. Patterns of N loss varied with site and form of N addition and most of the N input was retained. For 16 lake/watersheds no consistent changes in NO 3 - concentrations were found from 1982 to 1997. Simulations suggested that marked NO 3 - loss will only be manifested over extended periods. Studies at the Arbutus Watershed provided information on the role of biogeochemical and hydrological factors in affecting the spatial and temporal patterns of NO 3 - concentrations. The heterogeneous topography in the Adirondacks has generated diverse landscape features and patterns of connectivity that are especially important in regulating the temporal and spatial patterns of NO 3 - concentrations in surface waters

15N/14N variations in Cretaceous Atlantic sedimentary sequences: implication for past changes in marine nitrogen biogeochemistry

Science.gov (United States)

Rau, G.H.; Arthur, M.A.; Dean, W.E.

1987-01-01

At two locations in the Atlantic Ocean (DSDP Sites 367 and 530) early to middle Cretaceous organic-carbon-rich beds ("black shales") were found to have significantly lower ??15N values (lower 15N/14N ratios) than adjacent organic-carbon-poor beds (white limestones or green claystones). While these lithologies are of marine origin, the black strata in particular have ??15N values that are significantly lower than those previously found in the marine sediment record and most contemporary marine nitrogen pools. In contrast, black, organic-carbon-rich beds at a third site (DSDP Site 603) contain predominantly terrestrial organic matter and have C- and N-isotopic compositions similar to organic matter of modern terrestrial origin. The recurring 15N depletion in the marine-derived Cretaceous sequences prove that the nitrogen they contain is the end result of an episodic and atypical biogeochemistry. Existing isotopic and other data indicate that the low 15N relative abundance is the consequence of pelagic rather than post-depositional processes. Reduced ocean circulation, increased denitrification, and, hence, reduced euphotic zone nitrate availability may have led to Cretaceous phytoplankton assemblages that were periodically dominated by N2-fixing blue-green algae, a possible source of this sediment 15N-depletion. Lack of parallel isotopic shifts in Cretaceous terrestrially-derived nitrogen (Site 603) argues that the above change in nitrogen cycling during this period did not extend beyond the marine environment. ?? 1987.

Investigating regional mobility in the southern hinterland of the Wari Empire: biogeochemistry at the site of Beringa, Peru.

Science.gov (United States)

Knudson, Kelly J; Tung, Tiffiny A

2011-06-01

Empires have transformed political, social, and environmental landscapes in the past and present. Although much research on archaeological empires focuses on large-scale imperial processes, we use biogeochemistry and bioarchaeology to investigate how imperialism may have reshaped regional political organization and regional migration patterns in the Wari Empire of the Andean Middle Horizon (ca. AD 600-1000). Radiogenic strontium isotope analysis of human remains from the site of Beringa in the Majes Valley of southern Peru identified the geographic origins of individuals impacted by the Wari Empire. At Beringa, the combined archaeological human enamel and bone values range from (87)Sr/(86)Sr = 0.70802 - 0.70960, with a mean (87)Sr/(86)Sr = 0.70842 ± 0.00027 (1σ, n = 52). These data are consistent with radiogenic strontium isotope data from the local fauna in the Majes Valley and imply that most individuals were local inhabitants, rather than migrants from the Wari heartland or some other locale. There were two outliers at Beringa, and these "non-local" individuals may have derived from other parts of the South Central Andes. This is consistent with our understanding of expansive trade networks and population movement in the Andean Middle Horizon, likely influenced by the policies of the Wari Empire. Although not a Wari colony, the incorporation of small sites like Beringa into the vast social and political networks of the Middle Horizon resulted in small numbers of migrants at Beringa. Copyright © 2011 Wiley-Liss, Inc.

A pilot Virtual Observatory (pVO) for integrated catchment science - Demonstration of national scale modelling of hydrology and biogeochemistry (Invited)

Science.gov (United States)

Freer, J. E.; Bloomfield, J. P.; Johnes, P. J.; MacLeod, C.; Reaney, S.

2010-12-01

There are many challenges in developing effective and integrated catchment management solutions for hydrology and water quality issues. Such solutions should ideally build on current scientific evidence to inform policy makers and regulators and additionally allow stakeholders to take ownership of local and/or national issues, in effect bringing together ‘communities of practice’. A strategy being piloted in the UK as the Pilot Virtual Observatory (pVO), funded by NERC, is to demonstrate the use of cyber-infrastructure and cloud computing resources to investigate better methods of linking data and models and to demonstrate scenario analysis for research, policy and operational needs. The research will provide new ways the scientific and stakeholder communities come together to exploit current environmental information, knowledge and experience in an open framework. This poster presents the project scope and methodologies for the pVO work dealing with national modelling of hydrology and macro-nutrient biogeochemistry. We evaluate the strategies needed to robustly benchmark our current predictive capability of these resources through ensemble modelling. We explore the use of catchment similarity concepts to understand if national monitoring programs can inform us about the behaviour of catchments. We discuss the challenges to applying these strategies in an open access and integrated framework and finally we consider the future for such virtual observatory platforms for improving the way we iteratively improve our understanding of catchment science.

Biogeochemistry and biodiversity interact to govern N2 fixers (Fabaceae) across Amazon tropical forests

Science.gov (United States)

Batterman, Sarah; Hedin, Lars; Lloyd, Jon; Quesada, Beto

2015-04-01

Dinitrogen (N2)-fixing trees in the Fabaceae fulfill a central role in tropical rainforests by supplying nitrogen from the atmosphere, yet whether they will support a forest CO2 sink in the future by alleviating nitrogen limitation may depend on whether and how they are controlled by local environmental conditions. Theory predicts that soil nutrients govern the function of N2 fixers, yet there have been no large-scale field-based tests of this idea. Moreover, recent findings indicate that N2-fixing species behave differently in biogeochemical cycles, suggesting that any environmental control may differ by species, and that the diversity of N2-fixing trees may be critical for ensuring tropical forest function. In this talk, we will use the RAINFOR dataset of 108 (~1.0 ha) lowland tropical rainforest plots from across the Amazon Basin to test whether the abundance and diversity of N2-fixing trees are controlled by soil nutrient availability (i.e., increasing with phosphorus and decreasing with nitrogen), or if fixer abundance and diversity simply follow the dynamics of all tree species. We also test an alternative - but not mutually exclusive - hypothesis that the governing factor for fixers is forest disturbance. Results show a surprising lack of control by local nutrients or disturbance on the abundance or diversity of N2 fixers. The dominant driver of fixer diversity was the total number of tree species, with fixers comprising 10% of all species in a forest plot (R2 = 0.75, linear regression). When considering the dominant taxa of N2 fixers (Inga, Swartzia, Tachigali) alone, environmental factors (nitrogen, phosphorus and disturbance) became important and clearly governed their abundance. These taxa, which contain >60% of N2-fixing trees in the data set, appear to have evolved to specialize in different local environmental conditions. The strong biogeochemistry-by-biodiversity interaction observed here points to a need to consider individual species or taxa of N2

Implications of sea-ice biogeochemistry for oceanic production and emissions of dimethyl sulfide in the Arctic

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H. Hayashida

2017-06-01

Full Text Available Sea ice represents an additional oceanic source of the climatically active gas dimethyl sulfide (DMS for the Arctic atmosphere. To what extent this source contributes to the dynamics of summertime Arctic clouds is, however, not known due to scarcity of field measurements. In this study, we developed a coupled sea ice–ocean ecosystem–sulfur cycle model to investigate the potential impact of bottom-ice DMS and its precursor dimethylsulfoniopropionate (DMSP on the oceanic production and emissions of DMS in the Arctic. The results of the 1-D model simulation were compared with field data collected during May and June of 2010 in Resolute Passage. Our results reproduced the accumulation of DMS and DMSP in the bottom ice during the development of an ice algal bloom. The release of these sulfur species took place predominantly during the earlier phase of the melt period, resulting in an increase of DMS and DMSP in the underlying water column prior to the onset of an under-ice phytoplankton bloom. Production and removal rates of processes considered in the model are analyzed to identify the processes dominating the budgets of DMS and DMSP both in the bottom ice and the underlying water column. When openings in the ice were taken into account, the simulated sea–air DMS flux during the melt period was dominated by episodic spikes of up to 8.1 µmol m−2 d−1. Further model simulations were conducted to assess the effects of the incorporation of sea-ice biogeochemistry on DMS production and emissions, as well as the sensitivity of our results to changes of uncertain model parameters of the sea-ice sulfur cycle. The results highlight the importance of taking into account both the sea-ice sulfur cycle and ecosystem in the flux estimates of oceanic DMS near the ice margins and identify key uncertainties in processes and rates that should be better constrained by new observations.

Disentangling the long-term effects of disturbance on soil biogeochemistry in a wet tropical forest ecosystem.

Science.gov (United States)

Gutiérrez Del Arroyo, Omar; Silver, Whendee L

2018-04-01

Climate change is increasing the intensity of severe tropical storms and cyclones (also referred to as hurricanes or typhoons), with major implications for tropical forest structure and function. These changes in disturbance regime are likely to play an important role in regulating ecosystem carbon (C) and nutrient dynamics in tropical and subtropical forests. Canopy opening and debris deposition resulting from severe storms have complex and interacting effects on ecosystem biogeochemistry. Disentangling these complex effects will be critical to better understand the long-term implications of climate change on ecosystem C and nutrient dynamics. In this study, we used a well-replicated, long-term (10 years) canopy and debris manipulation experiment in a wet tropical forest to determine the separate and combined effects of canopy opening and debris deposition on soil C and nutrients throughout the soil profile (1 m). Debris deposition alone resulted in higher soil C and N concentrations, both at the surface (0-10 cm) and at depth (50-80 cm). Concentrations of NaOH-organic P also increased significantly in the debris deposition only treatment (20-90 cm depth), as did NaOH-total P (20-50 cm depth). Canopy opening, both with and without debris deposition, significantly increased NaOH-inorganic P concentrations from 70 to 90 cm depth. Soil iron concentrations were a strong predictor of both C and P patterns throughout the soil profile. Our results demonstrate that both surface- and subsoils have the potential to significantly increase C and nutrient storage a decade after the sudden deposition of disturbance-related organic debris. Our results also show that these effects may be partially offset by rapid decomposition and decreases in litterfall associated with canopy opening. The significant effects of debris deposition on soil C and nutrient concentrations at depth (>50 cm), suggest that deep soils are more dynamic than previously believed, and can serve as

The relationship between sea ice bacterial community structure and biogeochemistry: A synthesis of current knowledge and known unknowns

Directory of Open Access Journals (Sweden)

Jeff S. Bowman

2015-10-01

Full Text Available Abstract Sea ice plays an important role in high latitude biogeochemical cycles, ecosystems, and climate. A complete understanding of how sea ice biogeochemistry contributes to these processes must take into account the metabolic functions of the sea ice bacterial community. While the roles of sea ice bacteria in the carbon cycle and sea ice microbial loop are evidenced by high rates of bacterial production (BP, their metabolic diversity extends far beyond heterotrophy, and their functionality encompasses much more than carbon turnover. Work over the last three decades has identified an active role for sea ice bacteria in phosphate and nitrogen cycling, mutualistic partnerships with ice algae, and even prokaryotic carbon fixation. To better understand the role of sea ice bacteria in the carbon cycle the existing sea ice BP and primary production data were synthesized. BP in sea ice was poorly correlated with primary production, but had a strong, variable relationship with chlorophyll a, with a positive correlation below 50 mg chlorophyll a m-3 and a negative correlation above this value. These results concur with previous work suggesting that BP can be inhibited by grazing or the production of bacteriostatic compounds. To extend existing observations and predictions of other community functions a metabolic inference technique was used on the available 16S rRNA gene data. This analysis provided taxonomic support for some observed metabolic processes, as well as underexplored processes such as sulfur oxidation and nitrogen fixation. The decreasing spatial and temporal extent of sea ice, and altered timing of ice formation and melt, are likely to impact the structure and function of sea ice bacterial communities. An adequate modeling framework and studies that can resolve the functional dynamics of the sea ice bacterial community, such as community gene expression studies, are urgently needed to predict future change.

A model of Fe speciation and biogeochemistry at the Tropical Eastern North Atlantic Time-Series Observatory site

Science.gov (United States)

Ye, Y.; Völker, C.; Wolf-Gladrow, D. A.

2009-10-01

A one-dimensional model of Fe speciation and biogeochemistry, coupled with the General Ocean Turbulence Model (GOTM) and a NPZD-type ecosystem model, is applied for the Tropical Eastern North Atlantic Time-Series Observatory (TENATSO) site. Among diverse processes affecting Fe speciation, this study is focusing on investigating the role of dust particles in removing dissolved iron (DFe) by a more complex description of particle aggregation and sinking, and explaining the abundance of organic Fe-binding ligands by modelling their origin and fate. The vertical distribution of different particle classes in the model shows high sensitivity to changing aggregation rates. Using the aggregation rates from the sensitivity study in this work, modelled particle fluxes are close to observations, with dust particles dominating near the surface and aggregates deeper in the water column. POC export at 1000 m is a little higher than regional sediment trap measurements, suggesting further improvement of modelling particle aggregation, sinking or remineralisation. Modelled strong ligands have a high abundance near the surface and decline rapidly below the deep chlorophyll maximum, showing qualitative similarity to observations. Without production of strong ligands, phytoplankton concentration falls to 0 within the first 2 years in the model integration, caused by strong Fe-limitation. A nudging of total weak ligands towards a constant value is required for reproducing the observed nutrient-like profiles, assuming a decay time of 7 years for weak ligands. This indicates that weak ligands have a longer decay time and therefore cannot be modelled adequately in a one-dimensional model. The modelled DFe profile is strongly influenced by particle concentration and vertical distribution, because the most important removal of DFe in deeper waters is colloid formation and aggregation. Redissolution of particulate iron is required to reproduce an observed DFe profile at TENATSO site

Biogeochemistry of sulfur and iron in Thioploca-colonized surface sediments in the upwelling area off central chile

Science.gov (United States)

Zopfi, Jakob; Böttcher, Michael E.; Jørgensen, Bo Barker

2008-02-01

The biogeochemistry of sedimentary sulfur was investigated on the continental shelf off central Chile at water depths between 24 and 88 m under partial influence of an oxygen minimum zone. Dissolved and solid iron and sulfur species, including the sulfur intermediates sulfite, thiosulfate, and elemental sulfur, were analyzed at high resolution in the top 20 cm. All stations were characterized by high rates of sulfate reduction, but only the sediments within the Bay of Concepción contained dissolved sulfide. Due to advection and/or in-situ reoxidation of sulfide, dissolved sulfate was close to bottom water values. Whereas the concentrations of sulfite and thiosulfate were mostly in the submicromolar range, elemental sulfur was by far the dominant sulfur intermediate. Although the large nitrate- and sulfur-storing bacteria Thioploca were abundant, the major part of S 0 was located extracellularly. The distribution of sulfur species and dissolved iron suggests the reaction of sulfide with FeOOH as an important pathway for sulfide oxidation and sulfur intermediate formation. This is in agreement with the sulfur isotope composition of co-existing elemental sulfur and iron monosulfides. In the Bay of Concepción, sulfur isotope data suggest that pyrite formation proceeds via the reaction of FeS with polysulfides or H 2S. At the shelf stations, on the other hand, pyrite was significantly depleted in 34S relative to its potential precursors FeS and S 0. Isotope mass balance considerations suggest further that pyritization at depth includes light sulfide, potentially originating from bacterial sulfur disproportionation. The δ 34S-values of pyrite down to -38‰ vs. V-CDT are among the lightest found in organic-rich marine sediments. Seasonal variations in the sulfur isotope composition of dissolved sulfate indicated a dynamic non-steady-state sulfur cycle in the surface sediments. The 18O content of porewater sulfate increased with depth at all sites compared to the

A model of Fe speciation and biogeochemistry at the Tropical Eastern North Atlantic Time-Series Observatory site

Directory of Open Access Journals (Sweden)

Y. Ye

2009-10-01

Full Text Available A one-dimensional model of Fe speciation and biogeochemistry, coupled with the General Ocean Turbulence Model (GOTM and a NPZD-type ecosystem model, is applied for the Tropical Eastern North Atlantic Time-Series Observatory (TENATSO site. Among diverse processes affecting Fe speciation, this study is focusing on investigating the role of dust particles in removing dissolved iron (DFe by a more complex description of particle aggregation and sinking, and explaining the abundance of organic Fe-binding ligands by modelling their origin and fate.

The vertical distribution of different particle classes in the model shows high sensitivity to changing aggregation rates. Using the aggregation rates from the sensitivity study in this work, modelled particle fluxes are close to observations, with dust particles dominating near the surface and aggregates deeper in the water column. POC export at 1000 m is a little higher than regional sediment trap measurements, suggesting further improvement of modelling particle aggregation, sinking or remineralisation.

Modelled strong ligands have a high abundance near the surface and decline rapidly below the deep chlorophyll maximum, showing qualitative similarity to observations. Without production of strong ligands, phytoplankton concentration falls to 0 within the first 2 years in the model integration, caused by strong Fe-limitation. A nudging of total weak ligands towards a constant value is required for reproducing the observed nutrient-like profiles, assuming a decay time of 7 years for weak ligands. This indicates that weak ligands have a longer decay time and therefore cannot be modelled adequately in a one-dimensional model.

The modelled DFe profile is strongly influenced by particle concentration and vertical distribution, because the most important removal of DFe in deeper waters is colloid formation and aggregation. Redissolution of particulate iron is required to reproduce an

The effects of biomanipulation on the biogeochemistry, carbon isotopic composition and pelagic food web relations of a shallow lake

Directory of Open Access Journals (Sweden)

B. M. Bontes

2006-01-01

Full Text Available In this study we investigated the effects of experimental biomanipulation on community structure, ecosystem metabolism, carbon biogeochemistry and stable isotope composition of a shallow eutrophic lake in the Netherlands. Three different biomanipulation treatments were applied. In two parts of the lake, isolated from the rest, fish was removed and one part was used as a reference treatment in which no biomanipulation was applied. Stable isotopes have proved useful to trace trophic interactions at higher food web levels but until now methodological limitations have restricted species specific isotope analysis in the plankton community. We applied a new approach based on the combination of fluorescence activated cell sorting (FACS and isotope ratio mass spectrometry (IRMS to trace carbon flow through the planktonic food web. With this method we aimed at obtaining group specific δ13C signatures of phytoplankton and to trace possible shifts in δ13C resulting from fish removal. Biomanipulation led to an increase in transparency and macrophyte biomass and decrease in phytoplankton abundance, but zooplankton numbers did not increase. Fish removal also resulted in high pH, high O2, low CO2 and more negative δ13CDIC values than expected, which is attributed to chemical enhanced diffusion with large negative fractionation. Despite high temporal variation we detected differences between the isotopic signatures of the primary producers and between the different treatments. The fractionation values of green algae (~21 and diatoms (~23 were similar and independent of treatment, while fractionation factors of filamentous cyanobacteria were variable between the treatments that differed in CO2 availability. 13C-labeling of the phytoplankton groups showed that biomanipulation led to increased growth rates of green algae and diatoms at the expense of cyanobacteria. Finally, consumers seemed generalists to the available food sources.

Ocean Carbon and Biogeochemistry Scoping Workshop on Terrestrial and Coastal Carbon Fluxes in the Gulf of Mexico, St. Petersburg, FL, May 6-8, 2008

Science.gov (United States)

Robbins, L.L.; Coble, P.G.; Clayton, T.D.; Cai, W.J.

2009-01-01

Despite their relatively small surface area, ocean margins may have a significant impact on global biogeochemical cycles and, potentially, the global air-sea fluxes of carbon dioxide. Margins are characterized by intense geochemical and biological processing of carbon and other elements and exchange large amounts of matter and energy with the open ocean. The area-specific rates of productivity, biogeochemical cycling, and organic/inorganic matter sequestration are high in coastal margins, with as much as half of the global integrated new production occurring over the continental shelves and slopes (Walsh, 1991; Doney and Hood, 2002; Jahnke, in press). However, the current lack of knowledge and understanding of biogeochemical processes occurring at the ocean margins has left them largely ignored in most of the previous global assessments of the oceanic carbon cycle (Doney and Hood, 2002). A major source of North American and global uncertainty is the Gulf of Mexico, a large semi-enclosed subtropical basin bordered by the United States, Mexico, and Cuba. Like many of the marginal oceans worldwide, the Gulf of Mexico remains largely unsampled and poorly characterized in terms of its air-sea exchange of carbon dioxide and other carbon fluxes. In May 2008, the Ocean Carbon and Biogeochemistry Scoping Workshop on Terrestrial and Coastal Carbon Fluxes in the Gulf of Mexico was held in St. Petersburg, FL, to address the information gaps of carbon fluxes associated with the Gulf of Mexico and to offer recommendations to guide future research. The meeting was attended by over 90 participants from over 50 U.S. and Mexican institutions and agencies. The Ocean Carbon and Biogeochemistry program (OCB; http://www.us-ocb.org/) sponsored this workshop with support from the National Science Foundation, the National Oceanic and Atmospheric Administration, the National Aeronautics and Space Administration, the U.S. Geological Survey, and the University of South Florida. The goal of

Wastewater and Saltwater: Studying the Biogeochemistry and Microbial Activity Associated with Wastewater Inputs to San Francisco Bay

Science.gov (United States)

Challenor, T.; Menendez, A. D.; Damashek, J.; Francis, C. A.; Casciotti, K. L.

2014-12-01

Nitrification is the process of converting ammonium (NH­­4+) into nitrate (NO3-), and is a crucial step in removing nitrogen (N) from aquatic ecosystems. This process is governed by ammonia-oxidizing bacteria (AOB) and archaea (AOA) that utilize the ammonia monooxygenase gene (amoA). Studying the rates of nitrification and the abundances of ammonia-oxidizing microorganisms in south San Francisco Bay's Artesian Slough, which receives treated effluent from the massive San Jose-Santa Clara Regional Wastewater Facility, are important for understanding the cycling of nutrients in this small but complex estuary. Wastewater inputs can have negative environmental impacts, such as the release of nitrous oxide, a byproduct of nitrification and a powerful greenhouse gas. Nutrient inputs can also increase productivity and sometimes lead to oxygen depletion. Assessing the relative abundance and diversity of AOA and AOB, along with measuring nitrification rates gives vital information about the biology and biogeochemistry of this important N-cycling process. To calculate nitrification rates, water samples were spiked with 15N-labeled ammonium and incubated in triplicate for 24 hours. Four time-points were extracted across the incubation and the "denitrifier" method was used to measure the isotopic ratio of nitrate in the samples over time. In order to determine relative ratios of AOB to AOA, DNA was extracted from water samples and used in clade-specific amoA PCR assays. Nitrification rates were detectable in all locations sampled and were higher than in other regions of the bay, as were concentrations of nitrate and ammonium. Rates were highest in the regions of Artesian Slough most directly affected by wastewater effluent. AOB vastly outnumbered AOA, which is consistent with other studies showing that AOB prefer high nutrient environments. AOB diversity includes clades of Nitrosospira and Nitrosomonas prevalent in estuarine settings. Many of the sequenced genes are related

Using Green's Functions to initialize and adjust a global, eddying ocean biogeochemistry general circulation model

Science.gov (United States)

Brix, H.; Menemenlis, D.; Hill, C.; Dutkiewicz, S.; Jahn, O.; Wang, D.; Bowman, K.; Zhang, H.

2015-11-01

The NASA Carbon Monitoring System (CMS) Flux Project aims to attribute changes in the atmospheric accumulation of carbon dioxide to spatially resolved fluxes by utilizing the full suite of NASA data, models, and assimilation capabilities. For the oceanic part of this project, we introduce ECCO2-Darwin, a new ocean biogeochemistry general circulation model based on combining the following pre-existing components: (i) a full-depth, eddying, global-ocean configuration of the Massachusetts Institute of Technology general circulation model (MITgcm), (ii) an adjoint-method-based estimate of ocean circulation from the Estimating the Circulation and Climate of the Ocean, Phase II (ECCO2) project, (iii) the MIT ecosystem model "Darwin", and (iv) a marine carbon chemistry model. Air-sea gas exchange coefficients and initial conditions of dissolved inorganic carbon, alkalinity, and oxygen are adjusted using a Green's Functions approach in order to optimize modeled air-sea CO2 fluxes. Data constraints include observations of carbon dioxide partial pressure (pCO2) for 2009-2010, global air-sea CO2 flux estimates, and the seasonal cycle of the Takahashi et al. (2009) Atlas. The model sensitivity experiments (or Green's Functions) include simulations that start from different initial conditions as well as experiments that perturb air-sea gas exchange parameters and the ratio of particulate inorganic to organic carbon. The Green's Functions approach yields a linear combination of these sensitivity experiments that minimizes model-data differences. The resulting initial conditions and gas exchange coefficients are then used to integrate the ECCO2-Darwin model forward. Despite the small number (six) of control parameters, the adjusted simulation is significantly closer to the data constraints (37% cost function reduction, i.e., reduction in the model-data difference, relative to the baseline simulation) and to independent observations (e.g., alkalinity). The adjusted air-sea gas

Final Report - Phase II - Biogeochemistry of Uranium Under Reducing and Re-oxidizing Conditions: An Integrated Laboratory and Field Study

Energy Technology Data Exchange (ETDEWEB)

Peyton, Brent; Sani, Rajesh

2006-09-28

Our understanding of subsurface microbiology is hindered by the inaccessibility of this environment, particularly when the hydrogeologic medium is contaminated with toxic substances. Past research in our labs indicated that the composition of the growth medium (e.g., bicarbonate complexation of U(VI)) and the underlying mineral phase (e.g., hematite) significantly affects the rate and extent of U(VI) reduction and immobilization through a variety of effects. Our research was aimed at elucidating those effects to a much greater extent, while exploring the potential for U(IV) reoxidation and subsequent re-mobilization, which also appears to depend on the mineral phases present in the system. The project reported on here was an extension ($20,575) of the prior (much larger) project. This report is focused only on the work completed during the extension period. Further information on the larger impacts of our research, including 28 publications, can be found in the final report for the following projects: 1) Biogeochemistry of Uranium Under Reducing and Re-oxidizing Conditions: An Integrated Laboratory and Field Study Grant # DE-FG03-01ER63270, and 2) Acceptable Endpoints for Metals and Radionuclides: Quantifying the Stability of Uranium and Lead Immobilized Under Sulfate Reducing Conditions Grant # DE-FG03-98ER62630/A001 In this Phase II project, the toxic effects of uranium(VI) were studied using Desulfovibrio desulfuricans G20 in a medium containing bicarbonate or 1, 4-piperazinediethane sulfonic acid disodium salt monohydrate (PIPES) buffer (each at 30 mM, pH 7). The toxicity of uranium(VI) was dependent on the medium buffer and was observed in terms of longer lag times and in some cases, no measurable growth. The minimum inhibiting concentration (MIC) was 140 M U(VI) in PIPES buffered medium. This is 36 times lower than previously reported for D. desulfuricans. These results suggest that U(VI) toxicity and the detoxification mechanisms of G20 depend greatly on the

BOREAS TGB-5 CO2, CH4 and CO Chamber Flux Data Over the NSA

Science.gov (United States)

Burke, Roger; Hall, Forrest G. (Editor); Conrad, Sara K. (Editor); Zepp, Richard

2000-01-01

The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-5) team collected a variety of trace gas concentration and flux measurements at several NSA sites. This data set contains carbon dioxide (CO2), methane (CH4), and carbon monoxide (CO) chamber flux measurements conducted in 1994 at upland forest sites that experienced stand-replacement fires. These measurements were acquired to understand the impact of fires on soil biogeochemistry and related changes in trace gas exchange in boreal forest soils. Relevant ancillary data, including data concerning the soil temperature, solar irradiance, and information from nearby un-burned control sites, are included to provide a basis for modeling the regional impacts of fire and climate changes on trace gas biogeochemistry. The data are provided in tabular ASCII files.

The biogeochemistry and occurrence of unusual plant species inhabiting acidic, metal-rich water, Red Mountain, Bonnifield district, Alaska Range: Chapter J in Recent U.S. Geological Survey studies in the Tintina Gold Province, Alaska, United States, and Yukon, Canada--results of a 5-year project

Science.gov (United States)

Gough, Larry P.; Eppinger, Robert G.; Briggs, Paul H.

2007-01-01

This report presents results on the occurrence and biogeochemistry of unusual plant species, and of their supporting sediment, in an undisturbed volcanogenic massive sulfide deposit in the Tintina Gold Province (see fig. 1 of Editors’ Preface and Overview). The extraordinary plant assemblage found growing in the acidic metal-rich waters that drain the area is composed predominantly of bryophytes (liverworts and mosses). Ferricrete-cemented silty alluvial sediments within seeps and streams are covered with the liverwort Gymnocolea inflata, whereas the mosses Polytrichum commune and P. juniperinum inhabit the area adjacent to the water and within the splash zone. Both the liverwort-encrusted sediment and Polytrichum thalli have high concentrations of major- and trace-metal cations (for example, Al, As, Cu, Fe, Hg, La, Mn, Pb, and Zn). Soils in the area do not reflect the geochemical signature of the mineral deposit, and we suspect that they are most influenced by the chemistry of airborne dust (aeolian material) derived from outside the area.

Final Report - Phase II - Biogeochemistry of Uranium Under Reducing and Re-oxidizing Conditions: An Integrated Laboratory and Field Study ($20,575 extension)

International Nuclear Information System (INIS)

Brent Peyton; Rajesh Sani

2006-01-01

Our understanding of subsurface microbiology is hindered by the inaccessibility of this environment, particularly when the hydrogeologic medium is contaminated with toxic substances. Past research in our labs indicated that the composition of the growth medium (e.g., bicarbonate complexation of U(VI)) and the underlying mineral phase (e.g., hematite) significantly affects the rate and extent of U(VI) reduction and immobilization through a variety of effects. Our research was aimed at elucidating those effects to a much greater extent, while exploring the potential for U(IV) reoxidation and subsequent re-mobilization, which also appears to depend on the mineral phases present in the system. The project reported on here was an extension ($20,575) of the prior (much larger) project. This report is focused only on the work completed during the extension period. Further information on the larger impacts of our research, including 28 publications, can be found in the final report for the following projects: (1) Biogeochemistry of Uranium Under Reducing and Re-oxidizing Conditions: An Integrated Laboratory and Field Study Grant DE-FG03-01ER63270, and (2) Acceptable Endpoints for Metals and Radionuclides: Quantifying the Stability of Uranium and Lead Immobilized Under Sulfate Reducing Conditions Grant DE-FG03-98ER62630/A001 In this Phase II project, the toxic effects of uranium(VI) were studied using Desulfovibrio desulfuricans G20 in a medium containing bicarbonate or 1, 4-piperazinediethane sulfonic acid disodium salt monohydrate (PIPES) buffer (each at 30 mM, pH 7). The toxicity of uranium(VI) was dependent on the medium buffer and was observed in terms of longer lag times and in some cases, no measurable growth. The minimum inhibiting concentration (MIC) was 140 (micro)M U(VI) in PIPES buffered medium. This is 36 times lower than previously reported for D. desulfuricans. These results suggest that U(VI) toxicity and the detoxification mechanisms of G20 depend greatly

How deep can surface signals be traced in the critical zone? Merging biodiversity with biogeochemistry research in a central German Muschelkalk landscape

Directory of Open Access Journals (Sweden)

Kirsten eKüsel

2016-04-01

Full Text Available The Earth’s Critical Zone (CZ is a thin living layer connecting atmosphere and geosphere, including aquifers. Humans live in the CZ and benefit from the vital supporting services it provides. However, the CZ is increasingly impacted by human activities including land and resource use, pollution and climate change. Recent interest in uniting the many disciplines studying this complex domain has initiated an international network of research infrastructure platforms that allow access to the CZ in a range of geologic settings. In this paper a new such infrastructure platform associated with the Collaborative Research Center AquaDiva is described, that uniquely seeks to combine CZ research with detailed investigation of the functional biodiversity of the subsurface. Overall, AquaDiva aims to test hypotheses about how water connects surface conditions set by land cover and land management to the biota and biogeochemical functions in the subsurface. With long-term and continuous observations, hypotheses about how seasonal variations and extreme events at the surface impact subsurface processes, community structure and function, are tested. AquaDiva has established the Hainich Critical Zone Exploratory (CZE in central Germany in an alkaline geological setting of German Triassic Muschelkalk formations. The Hainich CZE includes specialized monitoring wells to access the vadose zone and two main groundwater complexes in limestone and marlstone parent materials along a ~6 km transect spanning forest, pasture and agricultural land uses. Initial results demonstrate fundamental differences in the biota and biogeochemistry of the two aquifer complexes that trace back to the land uses in their respective recharge areas. They also show the importance of antecedent conditions on the impact of precipitation events on responses in terms of groundwater dynamics, chemistry and ecology. Thus we find signals of surface land use and events can be detected in the

The stable carbon isotope biogeochemistry of acetate and other dissolved carbon species in deep subseafloor sediments at the northern Cascadia Margin

Science.gov (United States)

Heuer, Verena B.; Pohlman, John W.; Torres, Marta E.; Elvert, Marcus; Hinrichs, Kai-Uwe

2009-01-01

-accepting process. Further, the isotopic relationship suggests a relative increase in acetate flow to acetoclastic methanogenesis with depth although its contribution to total methanogenesis is probably small. Our study demonstrates how the stable carbon isotope biogeochemistry of acetate can be used to identify pathways of microbial carbon turnover in subsurface environments. Our observations also raise new questions regarding the factors controlling acetate turnover in marine sediments.

Soil biogeochemistry properties vary between two boreal forest ecosystems in Quebec: significant differences in soil carbon, available nutrients and iron and aluminium crystallinity

Science.gov (United States)

Bastianelli, Carole; Ali, Adam A.; Beguin, Julien; Bergeron, Yves; Grondin, Pierre; Hély, Christelle; Paré, David

2017-04-01

parameters (moisture, radiation rate, redox conditions, etc.). Our data underline significant differences in soil biogeochemistry under different forest ecosystems and reveal the importance of interactions in the soil-vegetation-climate system for the determination of soil composition.

Biogeochemistry: Oxygen burrowed away

NARCIS (Netherlands)

Meysman, F.J.R.

2014-01-01

Multicellular animals probably evolved at the seafloor after a rise in oceanic oxygen levels. Biogeochemical model simulations suggest that as these animals started to rework the seafloor, they triggered a negative feedback that reduced global oxygen.

Biogeochemistry of Halogenated Hydrocarbons

Science.gov (United States)

Adriaens, P.; Gruden, C.; McCormick, M. L.

2003-12-01

Halogenated hydrocarbons originate from both natural and industrial sources. Whereas direct anthropogenic emissions to the atmosphere and biosphere are often easy to assess, particularly when they are tied to major industrial activities, the attribution of emissions to other human activities (e.g., biomass burning), diffuse sources (e.g., atmospheric discharge, run off), and natural production (e.g., soils, fungi, algae, microorganisms) are difficult to quantify. The widespread occurrence of both alkyl and aryl halides in groundwater, surface water, soils, and various trophic food chains, even those not affected by known point sources, suggests a substantial biogeochemical cycling of these compounds (Wania and Mackay, 1996; Adriaens et al., 1999; Gruden et al., 2003). The transport and reactive fate mechanisms controlling their reactivity are compounded by the differences in sources of alkyl-, aryl-, and complex organic halides, and the largely unknown impact of biogenic processes, such as enzymatically mediated halogenation of organic matter, fungal production of halogenated hydrocarbons, and microbial or abiotic transformation reactions (e.g., Asplund and Grimvall, 1991; Gribble, 1996; Watling and Harper, 1998; Oberg, 2002). The largest source may be the natural halogenation processes in the terrestrial environment, as the quantities detected often exceed the amount that can be explained by human activities in the surrounding areas ( Oberg, 1998). Since biogeochemical processes result in the distribution of a wide range of halogenated hydrocarbon profiles, altered chemical structures, and isomer distributions in natural systems, source apportionment (or environmental forensics) can often only be resolved using multivariate statistical methods (e.g., Goovaerts, 1998; Barabas et al., 2003; Murphy and Morrison, 2002).This chapter will describe the widespread occurrence of halogenated hydrocarbons, interpret their distribution and biogeochemical cycling in light of natural and anthropogenic sources, biotic and abiotic reactivity, and prevailing cycling mechanisms. Specific emphasis will be placed on the potential role of biotic and abiotic transformation reactions in soil, water, and sediment environments resulting in environmental sequestration and phase transfer.

Biogeochemistry of paddy soils

NARCIS (Netherlands)

Kögel-Knabner, I.; Amelung, W.; Cao, Z.; Fiedler, S.; Frenzel, P.; Jahn, R.; Kalbitz, K.; Kölbl, A.; Schloter, M.

2010-01-01

Paddy soils make up the largest anthropogenic wetlands on earth. They may originate from any type of soil in pedological terms, but are highly modified by anthropogenic activities. The formation of these Anthrosols is induced by tilling the wet soil (puddling), and the flooding and drainage regime

Diversity of environmental biogeochemistry

National Research Council Canada - National Science Library

Berthelin, J

1991-01-01

... and extreme environments, Sulfur and nitrogen oxido-reduction processes, Weathering and formation of minerals, Soil functioning processes with reference to carbon, nitrogen, minerals evolution in the "soil...

Marine biogeochemistry of radionuclides

International Nuclear Information System (INIS)

Fowler, S.W.

1997-01-01

Radionuclides entering the ocean from runoff, fallout, or deliberate release rapidly become involved in marine biogeochemical cycles. Sources, sinks and transport of radionuclides and analogue elements are discussed with emphasis placed on how these elements interact with marine organisms. Water, food and sediments are the source terms from which marine biota acquire radionuclides. Uptake from water occurs by surface adsorption, absorption across body surfaces, or a combination of both. Radionuclides ingested with food are either assimilated into tissue or excreted. The relative importance of the food and water pathway in uptake varies with the radionuclide and the conditions under which exposure occurs. Evidence suggests that, compared to the water and food pathways, bioavailability of sediment-bound radionuclides is low. Bioaccumulation processes are controlled by many environmental and intrinsic factors including exposure time, physical-chemical form of the radionuclide, salinity, temperature, competitive effects with other elements, organism size, physiology, life cycle and feeding habits. Once accumulated, radionuclides are transported actively by vertical and horizontal movements of organisms and passively by release of biogenic products, e.g., soluble excreta, feces, molts and eggs. Through feeding activities, particles containing radionuclides are ''packaged'' into larger aggregates which are redistributed upon release. Most radionuclides are not irreversibly bound to such particles but are remineralized as they sink and/or decompose. In the pelagic zones, sinking aggregates can further scavenge particle-reactive elements thus removing them from the surface layers and transporting them to depth. Evidence from both radiotracer experiments and in situ sediment trap studies is presented which illustrates the importance of biological scavenging in controlling the distribution of radionuclides in the water column. (author)

Diversity of environmental biogeochemistry

National Research Council Canada - National Science Library

Berthelin, J

1991-01-01

.... The main topics are as follows: Paleo-environments and paleomicrobiota, Natural and xenobiotic organic indicators in different environments, Organic matter and carbon cycle in actual sedimentation processes, Deep reservoirs...

Forensic Stable Isotope Biogeochemistry

Science.gov (United States)

Cerling, Thure E.; Barnette, Janet E.; Bowen, Gabriel J.; Chesson, Lesley A.; Ehleringer, James R.; Remien, Christopher H.; Shea, Patrick; Tipple, Brett J.; West, Jason B.

2016-06-01

Stable isotopes are being used for forensic science studies, with applications to both natural and manufactured products. In this review we discuss how scientific evidence can be used in the legal context and where the scientific progress of hypothesis revisions can be in tension with the legal expectations of widely used methods for measurements. Although this review is written in the context of US law, many of the considerations of scientific reproducibility and acceptance of relevant scientific data span other legal systems that might apply different legal principles and therefore reach different conclusions. Stable isotopes are used in legal situations for comparing samples for authenticity or evidentiary considerations, in understanding trade patterns of illegal materials, and in understanding the origins of unknown decedents. Isotope evidence is particularly useful when considered in the broad framework of physiochemical processes and in recognizing regional to global patterns found in many materials, including foods and food products, drugs, and humans. Stable isotopes considered in the larger spatial context add an important dimension to forensic science.

Subsurface Biogeochemistry of Actinides

Energy Technology Data Exchange (ETDEWEB)

Kersting, Annie B. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). Univ. Relations and Science Education; Zavarin, Mavrik [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). Glenn T. Seaborg Inst.

2016-06-29

A major scientific challenge in environmental sciences is to identify the dominant processes controlling actinide transport in the environment. It is estimated that currently, over 2200 metric tons of plutonium (Pu) have been deposited in the subsurface worldwide, a number that increases yearly with additional spent nuclear fuel (Ewing et al., 2010). Plutonium has been shown to migrate on the scale of kilometers, giving way to a critical concern that the fundamental biogeochemical processes that control its behavior in the subsurface are not well understood (Kersting et al., 1999; Novikov et al., 2006; Santschi et al., 2002). Neptunium (Np) is less prevalent in the environment; however, it is predicted to be a significant long-term dose contributor in high-level nuclear waste. Our focus on Np chemistry in this Science Plan is intended to help formulate a better understanding of Pu redox transformations in the environment and clarify the differences between the two long-lived actinides. The research approach of our Science Plan combines (1) Fundamental Mechanistic Studies that identify and quantify biogeochemical processes that control actinide behavior in solution and on solids, (2) Field Integration Studies that investigate the transport characteristics of Pu and test our conceptual understanding of actinide transport, and (3) Actinide Research Capabilities that allow us to achieve the objectives of this Scientific Focus Area (SFA and provide new opportunities for advancing actinide environmental chemistry. These three Research Thrusts form the basis of our SFA Science Program (Figure 1).

Reconstruction of the biogeochemistry and ecology of photoautotrophs based on the nitrogen and carbon isotopic compositions of vanadyl porphyrins from Miocene siliceous sediments

Directory of Open Access Journals (Sweden)

Y. Kashiyama

2008-05-01

Full Text Available We determined both the nitrogen and carbon isotopic compositions of various vanadyl alkylporphyrins isolated from siliceous marine sediments of the Onnagawa Formation (middle Miocene, northeastern Japan to investigate the biogeochemistry and ecology of photoautotrophs living in the paleo-ocean. The distinctive isotopic signals support the interpretations of previous works that the origin of 17-nor-deoxophylloerythroetioporphyrin (DPEP is chlorophylls-c_1-3, whereas 8-nor-DPEP may have originated from chlorophylls-a₂ or b₂ or bacteriochlorophyll-a. Although DPEP and cycloheptanoDPEP are presumably derived from common precursory pigments, their isotopic compositions differed in the present study, suggesting that the latter represents a specific population within the photoautotrophic community. The average δ¹⁵N value for the entire photoautotrophic community is estimated to be –2 to +1‰ from the δ¹⁵N values of DPEP (–6.9 to –3.6‰; n=7, considering that the empirical isotopic relationships that the tetrapyrrole nuclei of chloropigments are depleted in ¹⁵N by ~4.8‰ and enriched in ¹³C by ~1.8‰ relative to the whole cells. This finding suggests that nitrogen utilized in the primary production was supplied mainly through N₂-fixation by diazotrophic cyanobacteria. Based on the δ¹³C values of DPEP (–17.9 to –15.6‰; n=7, we estimated isotopic fractionation associated with photosynthetic carbon fixation to be 8–14‰. This range suggests the importance of β-carboxylation and/or active transport of the carbon substrate, indicating in turn the substantial contribution of diazotrophic cyanobacteria to primary production. Based on the δ¹⁵N values of 17-nor-DPEP (–7.4 to –2.4‰ n=7, the δ¹⁵N range of chlorophylls-c-producing algae was estimated to be –3

Modern biogeochemistry environmental risk assessment

CERN Document Server

Bashkin, Vladimir N

2006-01-01

Most books deal mainly with various technical aspects of ERA description and calculationsAims at generalizing the modern ideas of both biogeochemical and environmental risk assessment during recent yearsAims at supplementing the existing books by providing a modern understanding of mechanisms that are responsible for the ecological risk for human beings and ecosystem

Marine oligotrophy and element biogeochemistry

International Nuclear Information System (INIS)

Jeffree, R.A.; Szymczak, R.

1999-01-01

A biogeochemical model has been developed that explains the inverse and non-linear relationship between Po-210 concentration in zooplankton and their biomass, under oligotrophic conditions in French Polynesia. This study identified other elements with comparable accumulatory behaviours to Po-210 in phytoplankton, seston and zooplankton, that are proposed to be critical to its enhanced environmental levels under oligotrophy. Field investigation in the Gulf of Papua showed that four of these a priori identified elements viz Cd, Co, Pb and Mn, as well as Cr and Ni, showed elevated water concentrations with reduced biological productivity, results that are consistent with those previously obtained for Po-210 and the proposed explanatory model. These findings point to the enhanced susceptibility of oligotrophic systems to contamination from particle-reactive elements. (author)

Biogeochemistry of landfill leachate plumes

DEFF Research Database (Denmark)

Christensen, Thomas Højlund; Kjeldsen, Peter; Bjerg, Poul Løgstrup

2001-01-01

are relatively narrow and do not in terms of width exceed the width of the landfill. The concept of redox zones being present in the plume has been confirmed by the reported composition of the leachate contaminated groundwater at several landfills and constitutes an important framework for understanding...... the behavior of the contaminants in the plume as the leachate migrates away from the landfill. Diverse microbial communities have been identified in leachate plumes and are believed to be responsible for the redox processes. Dissolved organic C in the leachate, although it appears to be only slowly degradable...... to be subject to anaerobic oxidation, but the mechanisms are not yet understood. Heavy metals do not seem to constitute a significant pollution problem at landfills, partly because the heavy metal concentrations in the leachate often are low, and partly because of strong attenuation by sorption...

Enhancement of oceanic nitrous oxide emissions by storms

Digital Repository Service at National Institute of Oceanography (India)

Bange, H.W.; Naik, H.; Naqvi, S.W.A.

NationalInstituteofOceanography,Goa,India, 3 Max-Planck-Institutfür MarineMikrobiologie,Bremen,GermanyContact:hbange@ifm-geomar.de Since2001HermannBangehasbeenworkingasachemicaloceanographerintheMarine Biogeochemistry...

Sensitivity of terrestrial ecosystems to elevated atmospheric CO{sub 2}: Comparisons of model simulation studies to CO{sub 2} effect

Energy Technology Data Exchange (ETDEWEB)

Pan, Y. [Marine Biological Lab., Woods Hole, MA (United States)

1995-06-01

In the context of a project to compare terrestrial ecosystem models, the Vegetation/Ecosystem Modeling and Analysis Project (VEMAP), we have analyzed how three biogeochemistry models link plant growth to doubled atmospheric CO{sub 2}. A common set of input data was used to drive three biogeochemistry models, BIOME-BGC, CENTURY and TEM. For the continental United States the simulation results show that with doubled CO{sub 2}, NPP increased by 8.7%, 5.0% and 10.8% for TEM, CENTURY and BIOME-BGC, respectively. At the biome level the range of NPP estimates varied considerably among models. TEM-simulated enhancement of NPP ranged from 2% to 28%; CENTURY, from 2% to 9%; and BIOME-BGC, from 4% to 27%. A transect analysis across several biomes along a latitude at 41.5 N shows that the TEM-simulated CO{sub 2} enhancement of NPP ranged from 0% to 22%; CENTURY, from 1% to 10% and BIOME-BGC, from 1% to 63%. In this study, we have investigated the underlying mechanisms of the three models to reveal how increased CO{sub 2} affects photosynthesis rate, water using efficiency and nutrient cycles. The relative importance of these mechanisms in each of the three biogeochemistry models will be discussed.

Understanding selenium biogeochemistry in engineered ecosystems

NARCIS (Netherlands)

Jain, Rohan; Hullebusch, Van Eric D.; Lenz, Markus; Farges, François

2017-01-01

Selenium is used extensively in many industries, and it is necessary for human nutrition. On the other hand, it is also toxic at slightly elevated concentrations. With the advent of industrialisation, selenium concentrations in the environment due to anthropogenic activities have increased.

Biogeochemistry: Food for early animal evolution

Science.gov (United States)

Knoll, Andrew H.

2017-08-01

A revised timeline for when algae became ecologically important among plankton in the ancient oceans reveals a link between chemical changes in those waters and the emergence of animals in marine ecosystems. See Letter p.578

Biogeochemistry of the stable hydrogen isotopes

International Nuclear Information System (INIS)

Estep, M.F.; Hoering, T.C.

1980-01-01

The fractionation of H isotopes between the water in the growth medium and the organically bonded H from microalgae cultured under conditions, where light intensity and wavelength, temperature, nutrient availability, and the H isotope ratio of the water were controlled, is reproducible and light dependent. All studies were based either on the H isotope ratios of the total organic H or on the lipids, where most of the H is firmly bonded to C. H bonded into other macromolecules, proteins, carbohydrates and nucleic acids, does not exchange with water, when algae are incubated in water enriched with deuterium. Only after the destruction of quaternary H bonds are labile hydrogens in macromolecules free to exchange with water. By growing algae (18 strains), including blue-green algae, green algae and diatoms, in continuous light, the isotope fractionations in photosynthesis were reproducibly -93 to -178 per thousand, depending on the organism tested. This fractionation was not temperature dependent. Microalgae grown in total darkness with an organic substrate did not show the isotope fractionation seen in cells grown in light. In both light- and dark-grown algae, however, additional depletion of deuterium (-30 to -60 per thousand) in cellular organic matter occurs during the metabolism of carbohydrates to form lipids. Plants from several natural populations also fractionated isotopes during photosynthesis by an average of -90 to -110 per thousand. In addition, the organically bonded H in nonsaponifiable lipids was further fractionated by -80 per thousand from that in saponifiable lipids, isolated from two geographically distinct populations of marsh plants. This difference between H isotope ratios of these two groups of lipids provides an endogenous isotopic marker. (author)

Biogeochemistry of Metals in Periodic Cicada

Science.gov (United States)

Robinson, G. R.; Sibrell, P. L.; Boughton, C. J.; Yang, L. H.; Hancock, T. C.

2005-05-01

Metal concentrations were measured in three species of 17-year periodic cicadas (Magicicada spp.) to determine the bioavailability of metals from both uncontaminated and lead-arsenate-pesticide contaminated soils and evaluate whether these metal concentrations might threaten wildlife. Collections were made in Clarke and Frederick Counties, Virginia and Berkeley and Jefferson Counties, West Virginia during Brood X emergence in May and June 2004. Periodic cicadas emerge synchronously at high density after 13 or 17 years of underground development, feeding on xylem fluids, and molt into their adult form leaving a keratin exoskeleton shell. They are an important food source for birds and animals during emergence events, and influence nutrient cycles in woodland settings. Soil concentrations at the collection sites vary over one order of magnitude for Co, Cu, Fe, Hg, Mn, Mo, Se, and Zn and over two orders of magnitude for As, Au, and Pb. The concentration levels of metals in adult periodic cicadas do not pose a dietary threat to birds and other wildlife that preferentially feed upon cicadas during emergence events. The adult cicadas contain concentrations of metals similar to, or less than, other invertebrates, such as earthworms. Average adult cicada body concentrations for As, Cu, Hg, Pb, and Zn are 3, 64, 0.015, 0.4, and 160 mg/Kg (dry weight), respectively. Much of the cicada nymph body load of metals is partitioned into the molt exoskeleton. Elements, such as Al, Fe, and Pb, are strongly enriched in the exoskeleton relative to the adult body; Cu and Zn are enriched in bodies. Concentrations of Fe, Co, and Pb, when normalized to inert soil constituents such as aluminum and cerium, are similar between the molt exoskeleton and their host soil, implying that passive assimilation through prolonged soil contact (adhesion or adsorption) may control these metal concentrations. Normalized concentrations of bioessential elements, such as S, P, K, Ca, Mn, Cu, Zn, and Mo, and chalcophile (sulfur-loving) elements, such as As, Se, and Au, show strong enrichment in cicada tissues relative to soil, implying selective absorption by xylem fluids and/or cicada nymph during development. Chalcophile elements, such as As and heavy metals, accumulate in keratin-rich tissues and may bind to sulfhydryl groups. Metal concentrations in exoskeleton show a positive correlation with soil metal concentrations. Metal concentrations in adult bodies do not correlate with soil chemistry, but bioessential elements S, Mn, Fe, and Zn show differences by sex and Cu and Zn by species.

Biogeochemistry of anaerobic crude oil biodegradation

Science.gov (United States)

Head, Ian; Gray, Neil; Aitken, Caroline; Sherry, Angela; Jones, Martin; Larter, Stephen

2010-05-01

Anaerobic degradation of crude oil and petroleum hydrocarbons is widely recognized as a globally significant process both in the formation of the world's vast heavy oil deposits and for the dissipation of hydrocarbon pollution in anoxic contaminated environments. Comparative analysis of crude oil biodegradation under methanogenic and sulfate-reducing conditions has revealed differences not only in the patterns of compound class removal but also in the microbial communities responsible. Under methanogenic conditions syntrophic associations dominated by bacteria from the Syntropheaceae are prevalent and these are likely key players in the initial anaerobic degradation of crude oil alkanes to intermediates such as hydrogen and acetate. Syntrophic acetate oxidation plays an important role in these systems and often results in methanogenesis dominated by CO2 reduction by members of the Methanomicrobiales. By contrast the bacterial communities from sulfate-reducing crude oil-degrading systems were more diverse and no single taxon dominated the oil-degrading sulfate-reducing systems. All five proteobacterial subdivisions were represented with Delta- and Gammaproteobacteria being detected most consistently. In sediments which were pasteurized hydrocarbon degradation continued at a relatively low rate. Nevertheless, alkylsuccinates characteristic of anaerobic hydrocarbon degradation accumulated to high concentrations. This suggested that the sediments harbour heat resistant, possibly spore-forming alkane degrading sulfate-reducers. This is particularly interesting since it has been proposed recently, that spore-forming sulfate-reducing bacteria found in cold arctic sediments may have originated from seepage of geofluids from deep subsurface hydrocarbon reservoirs.

Ectomycorrhizal mats alter forest soil biogeochemistry

Science.gov (United States)

Laurel A. Kluber; Kathryn M. Tinnesand; Bruce A. Caldwell; Susie M. Dunham; Rockie R. Yarwood; Peter J. Bottomley; David D. Myrold

2010-01-01

Dense hyphal mats formed by ectomycorrhizal (EcM) fungi are prominent features in Douglas-fir forest ecosystems, and have been estimated to cover up to 40% of the soil surface in some forest stands. Two morphotypes of EcM mats have been previously described: rhizomorphic mats, which have thick hyphal rhizomorphs and are found primarily in the organic horizon, and...

Biogeochemistry of the stable hydrogen isotopes

Energy Technology Data Exchange (ETDEWEB)

Estep, M F; Hoering, T C [Carnegie Institution of Washington, DC (USA)

1980-08-01

The fractionation of H isotopes between the water in the growth medium and the organically bonded H from microalgae cultured under conditions, where light intensity and wavelength, temperature, nutrient availability, and the H isotope ratio of the water were controlled, is reproducible and light dependent. All studies were based either on the H isotope ratios of the total organic H or on the lipids, where most of the H is firmly bonded to C. H bonded into other macromolecules, proteins, carbohydrates and nucleic acids, does not exchange with water, when algae are incubated in water enriched with deuterium. Only after the destruction of quaternary H bonds are labile hydrogens in macromolecules free to exchange with water. By growing algae (18 strains), including blue-green algae, green algae and diatoms, in continuous light, the isotope fractionations in photosynthesis were reproducibly -93 to -178 per thousand, depending on the organism tested. This fractionation was not temperature dependent. Microalgae grown in total darkness with an organic substrate did not show the isotope fractionation seen in cells grown in light. In both light- and dark-grown algae, however, additional depletion of deuterium (-30 to -60 per thousand) in cellular organic matter occurs during the metabolism of carbohydrates to form lipids. Plants from several natural populations also fractionated isotopes during photosynthesis by an average of -90 to -110 per thousand. In addition, the organically bonded H in nonsaponifiable lipids was further fractionated by -80 per thousand from that in saponifiable lipids, isolated from two geographically distinct populations of marsh plants. This difference between H isotope ratios of these two groups of lipids provides an endogenous isotopic marker.

Forest biogeochemistry in response to drought

Science.gov (United States)

William H. Schlesinger; Michael C. Dietze; Robert B. Jackson; Richard P. Phillips; Charles C. Rhoades; Lindsey E. Rustad; James M. Vose

2015-01-01

Trees alter their use and allocation of nutrients in response to drought, and changes in soil nutrient cycling and trace gas flux (N2O and CH4) are observed when experimental drought is imposed on forests. In extreme droughts, trees are increasingly susceptible to attack by pests and pathogens, which can lead to major changes in nutrient flux to the soil....

Understanding our seas: National Institute of Oceanography, Goa

Digital Repository Service at National Institute of Oceanography (India)

Naqvi, S.W.A.; Afzulpurkar, S.; Anil, A.C.; Chakraborty, P.; Dewangan, P.; Desai, D.V.; DeSouza, L.; Kessarkar, P.M.; Khandeparker, L.; Krishna, K.S.; Kurian, S.; Madhan, R.; Mascarenhas, A.A.M.Q.; Mazumdar, A.; Maurya, P.; Murty, V.S.N.; Nath, B.N.; Naik, H.; Navelkar, G.S.; PrasannaKumar, S.; Rao, V.P.; RameshKumar, M.R.; Ravichandran, C.; SanilKumar, V.; Saraswat, R.; Sarma, V.V.S.S.; Shankar, D.; Sharma, R.; Shenoy, D.M.; Suneel, V.; Thakur, N.L.; Unnikrishnan, A.S.; Vethamony, P.; Yatheesh, V.

, biogeochemistry, biology, marine geophysics, palaeoceanography, marine fishery, gas hydrates and wave energy. Technological advances covered topics like oceanographic tools. Major strides have been made in marine resources research and evaluation....

Exploring the controls of soil biogeochemistry in a restored coastal wetland using object-oriented computer simulations of uptake kinetics and thermodynamic optimization in batch reactors

Science.gov (United States)

Payn, R. A.; Helton, A. M.; Poole, G.; Izurieta, C.; Bernhardt, E. S.; Burgin, A. J.

2012-12-01

fact that aerobic respiration produces a higher energy yield from the available dissolved oxygen. This suggests that incorporation of an alternative hypothesis, such as a maximum efficiency model, may be necessary to explain an observation of substantial aerobic respiration occurring in the presence of high ammonium and oxygen concentrations. We are parameterizing and testing this model based on results from batch reactor experiments that have treated soil slurries with a full factorial combination of various levels of reactive solutes found in freshwater (e.g., nitrate) and seawater (e.g., sulfate). Initial comparisons suggest that the model may need to account for the biogeochemical reactivity of iron and the potential physical influence of salt to properly describe variability in the biogeochemistry of Timberlake soils. Comparisons of these evolving models with field-derived data from soils will ultimately reveal how thermodynamic theory may be used to explain the evolution of nutrient retention and greenhouse gas emission in the Timberlake Wetland, where nutrient behavior is changing after restoration from agricultural land use and where inputs of brackish water are expected to increase due to sea level rise.

78 FR 8128 - Request for Nominations of Experts to the EPA Office of Research and Development's Board of...

Science.gov (United States)

2013-02-05

... Program; Homeland Security Research Program; Human Health Risk Assessment Research Program; Safe and... --atmospheric physics Biology --biogeochemistry --cell biology --endocrinology (endocrine disruptors... analysis --uncertainty analysis Nanotechnology Public Health --children's health --community health...

Modeled responses of terrestrial ecosystems to elevated atmospheric CO2: a comparison of simulations by the biogeochemistry models of the Vegetation/Ecosystem Modeling and Analysis Project (VEMAP).

Science.gov (United States)

Pan, Yude; Melillo, Jerry M; McGuire, A David; Kicklighter, David W; Pitelka, Louis F; Hibbard, Kathy; Pierce, Lars L; Running, Steven W; Ojima, Dennis S; Parton, William J; Schimel, David S

1998-04-01

Although there is a great deal of information concerning responses to increases in atmospheric CO 2 at the tissue and plant levels, there are substantially fewer studies that have investigated ecosystem-level responses in the context of integrated carbon, water, and nutrient cycles. Because our understanding of ecosystem responses to elevated CO 2 is incomplete, modeling is a tool that can be used to investigate the role of plant and soil interactions in the response of terrestrial ecosystems to elevated CO 2 . In this study, we analyze the responses of net primary production (NPP) to doubled CO 2 from 355 to 710 ppmv among three biogeochemistry models in the Vegetation/Ecosystem Modeling and Analysis Project (VEMAP): BIOME-BGC (BioGeochemical Cycles), Century, and the Terrestrial Ecosystem Model (TEM). For the conterminous United States, doubled atmospheric CO 2 causes NPP to increase by 5% in Century, 8% in TEM, and 11% in BIOME-BGC. Multiple regression analyses between the NPP response to doubled CO 2 and the mean annual temperature and annual precipitation of biomes or grid cells indicate that there are negative relationships between precipitation and the response of NPP to doubled CO 2 for all three models. In contrast, there are different relationships between temperature and the response of NPP to doubled CO 2 for the three models: there is a negative relationship in the responses of BIOME-BGC, no relationship in the responses of Century, and a positive relationship in the responses of TEM. In BIOME-BGC, the NPP response to doubled CO 2 is controlled by the change in transpiration associated with reduced leaf conductance to water vapor. This change affects soil water, then leaf area development and, finally, NPP. In Century, the response of NPP to doubled CO 2 is controlled by changes in decomposition rates associated with increased soil moisture that results from reduced evapotranspiration. This change affects nitrogen availability for plants, which

Physical oceanography - Developing end-to-end models of the California Current Large Marine Ecosystem

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The purpose of this project is to develop spatially discrete end-to-end models of the California Current LME, linking oceanography, biogeochemistry, food web...

Atlantis model outputs - Developing end-to-end models of the California Current Large Marine Ecosystem

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The purpose of this project is to develop spatially discrete end-to-end models of the California Current LME, linking oceanography, biogeochemistry, food web...

West Coast fish, mammal, and bird species diets - Developing end-to-end models of the California Current Large Marine Ecosystem

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The purpose of this project is to develop spatially discrete end-to-end models of the California Current LME, linking oceanography, biogeochemistry, food web...

West Coast fish, mammal, bird life history and abunance parameters - Developing end-to-end models of the California Current Large Marine Ecosystem

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The purpose of this project is to develop spatially discrete end-to-end models of the California Current LME, linking oceanography, biogeochemistry, food web...

Arctic-COLORS (Coastal Land Ocean Interactions in the Arctic) - a NASA field campaign scoping study to examine land-ocean interactions in the Arctic

Science.gov (United States)

Hernes, P.; Tzortziou, M.; Salisbury, J.; Mannino, A.; Matrai, P.; Friedrichs, M. A.; Del Castillo, C. E.

2014-12-01

The Arctic region is warming faster than anywhere else on the planet, triggering rapid social and economic changes and impacting both terrestrial and marine ecosystems. Yet our understanding of critical processes and interactions along the Arctic land-ocean interface is limited. Arctic-COLORS is a Field Campaign Scoping Study funded by NASA's Ocean Biology and Biogeochemistry Program that aims to improve understanding and prediction of land-ocean interactions in a rapidly changing Arctic coastal zone, and assess vulnerability, response, feedbacks and resilience of coastal ecosystems, communities and natural resources to current and future pressures. Specific science objectives include: - Quantify lateral fluxes to the arctic inner shelf from (i) rivers and (ii) the outer shelf/basin that affect biology, biodiversity, biogeochemistry (i.e. organic matter, nutrients, suspended sediment), and the processing rates of these constituents in coastal waters. - Evaluate the impact of the thawing of Arctic permafrost within the river basins on coastal biology, biodiversity and biogeochemistry, including various rates of community production and the role these may play in the health of regional economies. - Assess the impact of changing Arctic landfast ice and coastal sea ice dynamics. - Establish a baseline for comparison to future change, and use state-of-the-art models to assess impacts of environmental change on coastal biology, biodiversity and biogeochemistry. A key component of Arctic-COLORS will be the integration of satellite and field observations with coupled physical-biogeochemical models for predicting impacts of future pressures on Arctic, coastal ocean, biological processes and biogeochemical cycles. Through interagency and international collaborations, and through the organization of dedicated workshops, town hall meetings and presentations at international conferences, the scoping study engages the broader scientific community and invites participation of

Gulf of California species and catch spatial distributions and historical time series - Developing end-to-end models of the Gulf of California

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The purpose of this project is to develop spatially discrete end-to-end models of the northern Gulf of California, linking oceanography, biogeochemistry, food web...

Model outputs - Developing end-to-end models of the Gulf of California

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The purpose of this project is to develop spatially discrete end-to-end models of the northern Gulf of California, linking oceanography, biogeochemistry, food web...

SUBJECT INDEX

Indian Academy of Sciences (India)

Carbon. The influence of Indian Ocean Dipole (IOD) on biogeochemistry of carbon in the Arabian Sea during. 1997–1998. 433 ... Coupled equations for transient water flow, heat flow, ... Penang Island, Malaysia. 661 .... Methane emission.

Mycorrhizal responses to biochar in soil-concepts and mechanisms.

NARCIS (Netherlands)

Warnock, D.D.; Lehmann, J.; Kuyper, T.W.; Rillig, M.C.

2007-01-01

Experiments suggest that biomass-derived black carbon (biochar) affects microbial populations and soil biogeochemistry. Both biochar and mycorrhizal associations, ubiquitous symbioses in terrestrial ecosystems, are potentially important in various ecosystem services provided by soils, contributing

Marine bacterioplankton community turnover within seasonally hypoxic waters of a subtropical sound

DEFF Research Database (Denmark)

Parsons, Rachel J.; Nelson, Craig E.; Carlson, Craig A.

2015-01-01

Understanding bacterioplankton community dynamics in coastal hypoxic environments is relevant to global biogeochemistry because coastal hypoxia is increasing worldwide. The temporal dynamics of bacterioplankton communities were analysed throughout the illuminated water column of Devil's Hole...

New Fellows and Honorary Fellow

Indian Academy of Sciences (India)

Date of birth: 16 March 1971. Specialization: Low Temperature Elemental & Isotope Geochemistry, Biogeochemistry of Trace Elements & Isotopes, Earth Surface & Ocean Processes Address: Geosciences Division, Physical Research Laboratory, Navrangpura, Ahmedabad 380 009, Gujarat Contact: Office: (079) 2631 4307

Benthic iron and phosphorus release from river dominated shelf sediments under varying bottom water O2 concentrations.

Science.gov (United States)

Ghaisas, N. A.; Maiti, K.; White, J. R.

2017-12-01

Phosphorus (P) cycling in coastal ocean is predominantly controlled by river discharge and biogeochemistry of the sediments. In coastal Louisiana, sediment biogeochemistry is strongly influenced by seasonally fluctuating bottom water O2, which, in turn transitions the shelf sediments from being a sink to source of P. Sediment P-fluxes were 9.73 ± 0.76 mg / m2 /d and 0.67±0.16 mg/m2/d under anaerobic and aerobic conditions respectively, indicating a 14 times higher P-efflux from oxygen deprived sediments. A high sedimentary oxygen consumption rate of 889 ± 33.6 mg/m2/d was due to organic matter re-mineralization and resulted in progressively decreasing the water column dissolved O2 , coincident with a P-flux of 7.2 ± 5.5 mg/m2/d from the sediment. Corresponding water column flux of Fe total was 19.7 ± 7.80 mg/m2/d and the sediment-TP decreased from 545 mg/Kg to 513 mg/Kg. A simultaneous increase in pore water Fe and P concentrations in tandem with a 34.6% loss in sedimentary Fe-bound P underscores the importance of O2 on coupled Fe- P biogeochemistry. This study suggests that from a 14,025 sq. km hypoxia area, Louisiana shelf sediments can supply 1.33x105 kg P/day into the water column compared to 0.094 x 105 kg P/day during the fully aerobic water column conditions.

Modelling global fresh surface water temperature

NARCIS (Netherlands)

Beek, L.P.H. van; Eikelboom, T.; Vliet, M.T.H. van; Bierkens, M.F.P.

2011-01-01

Temperature directly determines a range of water physical properties including vapour pressure, surface tension, density and viscosity, and the solubility of oxygen and other gases. Indirectly water temperature acts as a strong control on fresh water biogeochemistry, influencing sediment

Consequence of altered nitrogen cycles in the coupled human and ecological system under changing climate: The need for long-term and site-based research

Czech Academy of Sciences Publication Activity Database

Shibata, H.; Branquinho, C.; McDowell, W. H.; Mitchell, J.M.; Monteith, D. T.; Tang, J.; Arvola, L.; Cruz, C.; Cusack, D.F.; Halada, L.; Kopáček, Jiří; Máguas, C.; Sajidu, S.; Schubert, H.; Tokuchi, N.; Záhora, J.

2015-01-01

Roč. 44, č. 3 (2015), s. 178-193 ISSN 0044-7447 Institutional support: RVO:60077344 Keywords : atmospheric deposition * biogeochemistry * water quality * N2O * nitrogen leaching Subject RIV: DJ - Water Pollution ; Quality Impact factor: 2.555, year: 2015

Performance evaluation of nitrogen isotope ratio determination in marine and lacustrine sediments: An inter-laboratory comparison

NARCIS (Netherlands)

Bahlmann, E.; Bernasconi, S.M.; Bouillon, S.; Houtekamer, M.J.; Korntheuer, M.; Langenberg, F.; Mayr, C.; Metzke, M.; Middelburg, J.J.; Nagel, B.; Struck, U.; Voß, M.; Emeis, K.C.

2010-01-01

Nitrogen isotopes of organic matter are increasingly studied in marine biogeochemistry and geology, plant and animal ecology, and paleoceanography. Here, we present results of an inter-laboratory test on determination of nitrogen isotope ratios in marine and lacustrine sediments. Six different

IMPORTANCE OF "GREEN TIDES" IN A PACIFIC NORTHWEST ESTUARY: PRODUCTION DYNAMICS OF EELGRASS (ZOSTERA MARINA), DWARF EELGRASS (Z. JAPONICA) AND ENTEROMORPHA SPP.

Science.gov (United States)

Benthic macrophytes play a large role in the ecology and biogeochemistry of estuaries. I examine the relative contribution of macrophytes (seagrass and macroalgae) to overall productivity of a macrotidal system. Biomass data from Yaquina Bay suggests that although these seagras...

Ecosystem microbiology of coral reefs: linking genomic, metabolomic, and biogeochemical dynamics from animal symbioses to reefscape processes

NARCIS (Netherlands)

Wegley Kelly, L.; Haas, A.F.; Nelson, C.E.

2018-01-01

Over the past 2 decades, molecular techniques have established the critical role of both free-living and host-associated microbial partnerships in the environment. Advancing research to link microbial community dynamics simultaneously to host physiology and ecosystem biogeochemistry is required to

Deep-sea fungi

Digital Repository Service at National Institute of Oceanography (India)

Raghukumar, C; Damare, S.R.

significant in terms of carbon sequestration (5, 8). In light of this, the diversity, abundance, and role of fungi in deep-sea sediments may form an important link in the global C biogeochemistry. This review focuses on issues related to collection...

The formation and fate of chlorinated organic substances in temperate and boreal forest soils

Czech Academy of Sciences Publication Activity Database

Clarke, N.; Fuksová, Květoslava; Gryndler, Milan; Lachmanová, Z.; Liste, H. H.; Rohlenová, Jana; Schroll, R.; Schröder, P.; Matucha, Miroslav

2009-01-01

Roč. 16, č. 2 (2009), s. 127-143 ISSN 0944-1344 Institutional research plan: CEZ:AV0Z50380511; CEZ:AV0Z50200510 Keywords : Carbon cycle * Chlorination * Chlorine biogeochemistry Subject RIV: GK - Forestry Impact factor: 2.411, year: 2009

Improved simulation of river water and groundwater exchange in an alluvial plain using the SWAT model

Science.gov (United States)

Hydrological interaction between surface and subsurface water systems has a significant impact on water quality, ecosystems and biogeochemistry cycling of both systems. Distributed models have been developed to simulate this function, but they require detailed spatial inputs and extensive computati...

Ecological succession reveals potential signatures of marine-terrestrial transition in salt marsh fungal communities

NARCIS (Netherlands)

Dini-Andreote, Francisco; Pylro, Victor Satler; Baldrian, Petr; van Elsas, Jan Dirk; Salles, Joana Falcão

Marine-to-terrestrial transition represents one of the most fundamental shifts in microbial life. Understanding the distribution and drivers of soil microbial communities across coastal ecosystems is critical given the roles of microbes in soil biogeochemistry and their multifaceted influence on

Associateship | Indian Academy of Sciences

Indian Academy of Sciences (India)

Singh, Dr Arvind Ph.D. (MLS University). Date of birth: 30 June 1983. Specialization: Ocean Biogeochemistry, Anthropogenic Impacts on Marine Nitrogen Cycling, Stable Isotopes Address: Geoscience Division, Physical Research Laboratory, Navrangpura, Ahmedabad 380 009, Gujarat Contact: Office: (079) 2631 4366

Can changes in soil biochemistry and plant stoichiometry explain loss of animal diversity of heathlands?

NARCIS (Netherlands)

Vogels, J.J.; Verberk, W.C.E.P.; Lamers, L.P.M.; Siepel, H.

2017-01-01

Increased atmospheric deposition rates of nitrogen (N) and sulphur (S) are known to affect soil biogeochemistry and cause a decline in plant biodiversity of heathlands. Concomitant declines of heathland invertebrates are mainly attributed to changes in vegetation composition and altered habitat

Death by Ulva

Science.gov (United States)

We report on a series of field and laboratory mesocosm experiments where we examined the effects of two levels of decomposing Ulva on Spartina alterniflora growth, soil biogeochemistry, and nitrogen dynamics. Monitoring of porewater revealed rapid mineralization to ammonium from...

Mud, Macrofauna and Microbes: An ode to benthic organism-abiotic interactions at varying scales

Science.gov (United States)

Benthic environments are dynamic habitats, subject to variable sources and rates of sediment delivery, reworking from the abiotic and biotic processes, and complex biogeochemistry. These activities do not occur in a vacuum, and interact synergistically to influence food webs, bi...

Bacterial chemoautotrophy in coastal sediments

NARCIS (Netherlands)

Vasquez Cardenas, D.

2016-01-01

A key process in the biogeochemistry of coastal sediments is the reoxidation of reduced intermediates formed during anaerobic mineralization which in part is performed by chemoautotrophic bacteria. These bacteria fix inorganic carbon using the energy derived from reoxidation reactions. However the

Heavy metals biogeochemistry in abandoned mining areas

Directory of Open Access Journals (Sweden)

Favas P. J. C.

2013-04-01

Full Text Available Plants growing on the abandoned Portuguese mines, highly contaminated with W, Sn, As, Cd, Cu, Zn and Pb, have been studied for their biogeochemical indication/prospecting and mine restoration potential. The results of analysis show that the species best suited for biogeochemical indicating are: aerial tissues of Halimium umbellatum (L. Spach, for As and W; leaves of Erica arborea L. for Bi, Sn, W and mostly Pb; stems of Erica arborea L. for Pb; needles of Pinus pinaster Aiton and aerial tissues of Pteridium aquilinum (L. Kuhn for W; and leaves of Quercus faginea Lam. for Sn. The aquatic plant studied (Ranunculus peltatus Schrank can be used to decrease the heavy metals, and arsenic amounts into the aquatic environment affected by acid mine drainages.

Hydrography and biogeochemistry of the coastal ocean

Digital Repository Service at National Institute of Oceanography (India)

Naqvi, S.W.A.; Unnikrishnan, A.S.

especially when the period of maximal fresh- water discharge coincides with peak solar insolation (e.g., in summer off the mouths of the Mississippi and Atchafa- laya rivers in the Gulf of Mexico) [Rabalais et al., 2002]. Among other things, stagnation...

Biogeochemistry of radionuclides in ecosystems (historical aspect)

International Nuclear Information System (INIS)

Ivanov, V.I.

1991-01-01

The paper presents the most important results of the study on the radionuclides' behaviour in natural and model biogeocenoses(ecosystems) obtained by N.W.Timofeev-Ressovskij and co-workers during the period 1947-1968. As early as at that period, radionuclides were classified according to the types of distribution, accumulation and migration within the surface and freshwater ecosystems, and the methods of biological purification of radioactive sewage were proposed

Iron isotope biogeochemistry of Neoproterozoic marine shales

Science.gov (United States)

Kunzmann, Marcus; Gibson, Timothy M.; Halverson, Galen P.; Hodgskiss, Malcolm S. W.; Bui, Thi Hao; Carozza, David A.; Sperling, Erik A.; Poirier, André; Cox, Grant M.; Wing, Boswell A.

2017-07-01

Iron isotopes have been widely applied to investigate the redox evolution of Earth's surface environments. However, it is still unclear whether iron cycling in the water column or during diagenesis represents the major control on the iron isotope composition of sediments and sedimentary rocks. Interpretation of isotopic data in terms of oceanic redox conditions is only possible if water column processes dominate the isotopic composition, whereas redox interpretations are less straightforward if diagenetic iron cycling controls the isotopic composition. In the latter scenario, iron isotope data is more directly related to microbial processes such as dissimilatory iron reduction. Here we present bulk rock iron isotope data from late Proterozoic marine shales from Svalbard, northwestern Canada, and Siberia, to better understand the controls on iron isotope fractionation in late Proterozoic marine environments. Bulk shales span a δ 56Fe range from -0.45 ‰ to +1.04 ‰ . Although δ 56Fe values show significant variation within individual stratigraphic units, their mean value is closer to that of bulk crust and hydrothermal iron in samples post-dating the ca. 717-660 Ma Sturtian glaciation compared to older samples. After correcting for the highly reactive iron content in our samples based on iron speciation data, more than 90% of the calculated δ 56Fe compositions of highly reactive iron falls in the range from ca. -0.8 ‰ to +3 ‰ . An isotope mass-balance model indicates that diagenetic iron cycling can only change the isotopic composition of highly reactive iron by control the isotopic composition of highly reactive iron. Considering a long-term decrease in the isotopic composition of the iron source to the dissolved seawater Fe(II) reservoir to be unlikely, we offer two possible explanations for the Neoproterozoic δ 56Fe trend. First, a decreasing supply of Fe(II) to the ferrous seawater iron reservoir could have caused the reservoir to decrease in size, allowing a higher degree of partial oxidation, irrespective of increasing environmental oxygen levels. Alternatively, increasing oxygen levels would have led to a higher proportion of Fe(II) being oxidized, without decreasing the initial size of the ferrous seawater iron pool. We consider the latter explanation as the most likely. According to this hypothesis, the δ 56Fe record reflects the redox evolution of Earth's surface environments. δ 56Fe values in pre-Sturtian samples significantly heavier than bulk crust and hydrothermal iron imply partial oxidation of a ferrous seawater iron reservoir. In contrast, mean δ 56Fe values closer to that of hydrothermal iron in post-Sturtian shales reflects oxidation of a larger proportion of the ferrous seawater iron reservoir, and by inference, higher environmental oxygen levels. Nevertheless, significant iron isotopic variation in post-Sturtian shales suggest redox heterogeneity and possibly a dominantly anoxic deep ocean, consistent with results from recent studies using iron speciation and redox sensitive trace metals. However, the interpretation of generally increasing environmental oxygen levels after the Sturtian glaciation highlights the need to better understand the sensitivity of different redox proxies to incremental changes in oxygen levels to enable us to reconcile results from different paleoredox proxies.

Biogeochemistry of a treeline watershed, northwestern Alaska.

Science.gov (United States)

Stottlemyer, R

2001-01-01

Since 1950, mean annual temperatures in northwestern Alaska have increased. Change in forest floor and soil temperature or moisture could alter N mineralization rates, production of dissolved organic carbon (DOC) and organic nitrogen (DON), and their export to the aquatic ecosystem. In 1990, we began study of nutrient cycles in the 800-ha Asik watershed, located at treeline in the Noatak National Preserve, northwestern Alaska. This paper summarizes relationships between topographic aspect, soil temperature and moisture, inorganic and organic N pools, C pools, CO2 efflux, growing season net N mineralization rates, and stream water chemistry. Forest floor (O2) C/N ratios, C pools, temperature, and moisture were greater on south aspects. More rapid melt of the soil active layer (zone of annual freeze-thaw) and permafrost accounted for the higher moisture. The O2 C and N content were correlated with moisture, inorganic N pools, CO2 efflux, and inversely with temperature. Inorganic N pools were correlated with temperature and CO2 efflux. Net N mineralization rates were positive in early summer, and correlated with O2 moisture, temperature, and C and N pools. Net nitrification rates were inversely correlated with moisture, total C and N. The CO2 efflux increased with temperature and moisture, and was greater on south aspects. Stream ion concentrations declined and DOC increased with discharge. Stream inorganic nitrogen (DIN) output exceeded input by 70%. Alpine stream water nitrate (NO3-) and DOC concentrations indicated substantial contributions to the watershed DIN and DOC budgets.

Biogeochemistry of southern Australian continental slope sediments

International Nuclear Information System (INIS)

Veeh, H.H.; Crispe, A.J.; Heggie, D.T.

1999-01-01

Sediment cores from the middle to lower slope of the southern continental margin of Australia between the Great Australian Bight and western Tasmania are compared in terms of marine and terrigenous input signals during the Holocene. The mass accumulation rates of carbonate, organic carbon, biogenic Ba. and Al are corrected for lateral sediment input (focusing), using the inventory of excess 230 Th in the sediment normalised to its known production rate in the water column above each site. The biogenic signal is generally higher in the eastern part of the southern margin probably due to enhanced productivity associated with seasonal upwelling off southeastern South Australia and the proximity of the Subtropical Front, which passes just south of Tasmania. The input of Al, representing the terrigenous signal, is also higher in this region reflecting the close proximity of river runoff from the mountainous catchment of southeastern Australia. The distribution pattern of Mn and authigenic U, together with pore-water profiles of Mn ++ , indicate diagenetic reactions driven by the oxidation of buried organic carbon in an oxic to suboxic environment. Whereas Mn is reduced at depth and diffuses upwards to become immobilised in a Mn-rich surface layer. U is derived from seawater and diffuses downward into the sediment, driven by reduction and precipitation at a depth below the reduction zone of Mn. The estimated removal rate of U from seawater by this process is within the range of U removal measured in hemipelagic sediments from other areas, and supports the proposition that hemipelagic sediments are a major sink of U in the global ocean. Unlike Mn, the depth profile of sedimentary Fe appears to be little affected by diagenesis, suggesting that little of the total Fe inventory in the sediment is remobilised and redistributed as soluble Fe. Copyright (1999) Blackwell Science Pty Ltd

Biogeochemistry of metalliferous mine tailings during phytostabilizatio

Science.gov (United States)

Chorover, J.; Root, R. A.; Hammond, C.; Wang, Y.; Maier, R. M.

2015-12-01

In the semi-arid southwest US, legacy mine tailings and the associated metal(loid) contaminants, are prone to wind dispersion and water erosion. Without remediation, tailings can remain barren for decades to centuries, providing a point source of toxic contamination. Successful mitigation of toxins (As, Pb) from fugitive dust is often limited to confinement and stabilization. Capping mine tailings with soil or gravel is an accepted, although expensive, strategy to reduce erosion. Revegetation via assisted direct planting (also known as phytostabilization) has the potential to be a cost-effective and self-sustaining alternative "green-technology" to expensive capping. The impact of phytostabilization, and requisite added organic carbon and irrigation on mechanisms of contaminant mobility is being investigated with concurrent highly-instrumented greenhouse mesocosms and in situ field studies using advanced microbiological tools and synchrotron x-ray based molecular probes. Composted treatments initially neutralized the near surface acid tailings (~2 to ~6.5). However, after 9 mo the mesocosms showed a gradual and eventual decrease back to pH 2. The exception was the root zone of Atriplex lentiformis, which buffered the acidic conditions for 12 months. Rhizosphere microbiota experienced a 5-log increase in the compost-amended compared to control greenhouse mesocosms. Weathering of the primary sulfidic mineral assemblage, indicated by the iron and sulfur speciation, was shown to control the mobility, speciation and bioavailability of both As and Pb via sequestration in (meta)stable neoformed jarosite phases as plumbojarosite and As(V) substituted for sulfate in hydronium jarosite, with important implications for human and environmental health risk management. We conclude that the disequilibrium imposed by phytostabilization results in an increase of heterotrophic biomass that is concurrent with a time series of geochemical transformations, which controls the species, fate, and bioavailability of toxic metal(loid)s. This long-term, multi-disciplinary, multi-scale study describes changes in contaminant lability promoted by biogeochemical weathering and helps establish the feasibility of phytostabilization.

Biogeochemistry of the sulfur oxidizer Thiomicrospira thermophila

Science.gov (United States)

Houghton, J.; Fike, D. A.; Wills, E.; Foustoukos, D.

2013-12-01

Near-seafloor hydrothermal environments such as diffuse flow venting or subsurface mixing are characterized by rapidly changing conditions and steep chemical and thermal gradients. Microorganisms living in these environments can take advantage of these changes by switching among metabolic pathways rather than specializing. We present reaction stoichiometry and rates for T. thermophila grown in a closed system both at ambient and elevated pressure (50 bars) that demonstrate substantial metabolic flexibility, shifting between up to 5 different sulfur cycling reactions over a 24 hour period. Based on the stoichiometry between S2O3 consumed and SO4 produced, three reactions are sulfur oxidation and two are disproportionation, which has not previously been demonstrated for Thiomicrospira strains. Reactants include S2O3, elemental S (both polymeric S chains and S8 rings), HS-, and O2, while products include polymeric elemental S, SO4, HS-, and polysulfides. The presence of μmolal concentrations of HS- has been confirmed during the time series only when stoichiometry predicts disproportionation. Production of HS- in the presence of elemental S results in abiotic conversion to polysulfides, keeping the sulfide concentrations low in solution. The transition from oxidation to disproportionation appears to be triggered by a depletion in dissolved oxygen and the rate of reaction is a second order function of S2O3 and O2 concentrations. Growth was tested at conditions spanning their pH tolerance (5.0 - 8.0) using a citrate buffer (pH 5.0), unbuffered media (initial pH 7.0), and Tris buffer (pH 8.0). The highest rates are observed at pH 8.0 with rates decreasing as a function of pH. The lowest rate occurs at pH 5.0 and exhibits pseudo-first order behavior over a 24 hour period, likely due to a long lag and very slow growth. Repeat injections after the culture is acclimated to the experimental conditions result in very high pseudo-first order rates due to rapid consumption of all available thiosulfate prior to oxygen depletion. Results from high-pressure closed system experiments (at 50 bars, buffered at pH 5.0) exhibit comparable rates to the corresponding ambient pressure condition. Future work will address the effect of dissolved O2 on sulfur disproportionation using continuous culturing of T. thermophila at deep-sea pressure conditions (>200 bar).

Time Series Observations in the North Indian Ocean

Digital Repository Service at National Institute of Oceanography (India)

Shenoy, D.M.; Naik, H.; Kurian, S.; Naqvi, S.W.A.; Khare, N.

Ocean and the ongoing time series study (Candolim Time Series; CaTS) off Goa. In addition, this article also focuses on the new time series initiative in the Arabian Sea and the Bay of Bengal under Sustained Indian Ocean Biogeochemistry and Ecosystem...

Gas Transport and Exchange through Wetland Plant Aerenchyma

DEFF Research Database (Denmark)

Sorrell, Brian Keith; Brix, Hans

2013-01-01

Aerenchyma, the large airspaces in aquatic plants, is a rapid gas transport pathway between atmosphere and soil in wetlands. Oxygen transport aerates belowground tissue and oxidizes rhizosphere soil, an important process in wetland biogeochemistry. Most plant O2 transport occurs by diffusion...

The role of trans-disciplinary skills in environmental education and science

Science.gov (United States)

In the past three decades there have been tremendous changes in how environmental scientists address issues relating to societal needs. In the early 1980s interdisciplinary work may have involved one or two related disciplines such as limnology, statistics and biogeochemistry in...

EXPERIMENTAL ACIDIFICATION CAUSES SOIL BASE-CATION DEPLETION AT THE BEAR BROOK WATERSHED IN MAINE

Science.gov (United States)

There is concern that changes in atmospheric deposition, climate, or land use have altered the biogeochemistry of forests causing soil base-cation depletion, particularly Ca. The Bear Brook Watershed in Maine (BBWM) is a paired watershed experiment with one watershed subjected to...

Response of soil dissolved organic matter to microplastic addition in Chinese loess soil

NARCIS (Netherlands)

Liu, Hongfei; Yang, Xiaomei; Liu, Guobin; Liang, Chutao; Xue, Sha; Chen, Hao; Ritsema, Coen J.; Geissen, Violette

2017-01-01

Plastic debris is accumulating in agricultural land due to the increased use of plastic mulches, which is causing serious environmental problems, especially for biochemical and physical properties of the soil. Dissolved organic matter (DOM) plays a central role in driving soil biogeochemistry, but

Marshes on the Move: Testing effects of seawater intrusion on vegetation communities of the salt marsh-upland ecotone

Science.gov (United States)

The Northeastern United States is a hotspot for sea level rise (SLR), subjecting coastal salt marshes to erosive loss, shifts in vegetation communities, and altered biogeochemistry due to seawater intrusion. Salt marsh plant community zonation is driven by tradeoffs in stress to...

Acclimation, adaptation, traits and trade-offs in plankton functional type models – seeking clarity in terminology

DEFF Research Database (Denmark)

Flynn, Kevin J.; St. John, Michael; Raven, John A.

2015-01-01

We propose definitions in terminology to enhance ongoing collaborations between biologists and modellers on plankton ecology. Organism “functional type” should refer to commonality in ecology not biogeochemistry; the latter is largely an emergent property of the former, while alignment with ecology...

The significance of biogeochemical cycles of macro- and microelements in connection with man-made evolution of the living matter

International Nuclear Information System (INIS)

Ermakov, V.V.

2008-01-01

Biogeochemistry as an integrated science studying the elemental composition of the living matter and its role in migration, transformation, accumulation of chemical elements and their compounds in the biosphere, has again become the leading scientific branch highlighting the man-made evolution of the planet and the pathways of interaction between the man and environment. Nowadays the central problem of biogeochemistry as science about the biosphere is that of pollution of the different taxons of the biosphere. In the most case man-made factors effect on the different organisms and the flow of chemical elements changing their local, regional and global biogeochemical cycles. The concept of balance of O 2 , CO 2 and H 2 O as general condition of the sustained development of the biosphere is considered. The questions of biological rhythms, appearance of microelementhoses and modern systemic biogeochemical methodology of assessment of taxons of the biosphere are considered too

Rapid oxygen exchange across the leaves of Littorella uniflora provides tolerance to sediment anoxia

DEFF Research Database (Denmark)

Møller, Claus Lindskov; Jensen, Kaj Sand

2012-01-01

1. Littorella uniflora and Lobelia dortmanna are prominent small rosette species in nutrient-poor, soft-water lakes because of efficient root exchange of CO2 and O2. We hypothesise that higher gas exchange across the leaves of L.similar to uniflora than of L.similar to dortmanna ensures O2 uptake...... from water and underlies its greater tolerance to sediment anoxia following organic enrichment. 2. We studied plant response to varying sediment O2 demand and biogeochemistry by measuring photosynthesis, gas exchange across leaves and O2 dynamics in plants during long-term laboratory and field studies....... Frequent non-destructive sampling of sediment pore water was used to track changes in sediment biogeochemistry. 3. Addition of organic matter triggered O2 depletion and accumulation of , Fe2+ and CO2 in sediments. Gas exchange across leaf surfaces was 1316 times higher for L.similar to uniflora than for L...

Geomicrobiological redox cycling of the transuranic element neptunium.

Science.gov (United States)

Law, Gareth T W; Geissler, Andrea; Lloyd, Jonathan R; Livens, Francis R; Boothman, Christopher; Begg, James D C; Denecke, Melissa A; Rothe, Jörg; Dardenne, Kathy; Burke, Ian T; Charnock, John M; Morris, Katherine

2010-12-01

Microbial processes can affect the environmental behavior of redox sensitive radionuclides, and understanding these reactions is essential for the safe management of radioactive wastes. Neptunium, an alpha-emitting transuranic element, is of particular importance because of its long half-life, high radiotoxicity, and relatively high solubility as Np(V)O(2)(+) under oxic conditions. Here, we describe experiments to explore the biogeochemistry of Np where Np(V) was added to oxic sediment microcosms with indigenous microorganisms and anaerobically incubated. Enhanced Np removal to sediments occurred during microbially mediated metal reduction, and X-ray absorption spectroscopy showed this was due to reduction to poorly soluble Np(IV) on solids. In subsequent reoxidation experiments, sediment-associated Np(IV) was somewhat resistant to oxidative remobilization. These results demonstrate the influence of microbial processes on Np solubility and highlight the critical importance of radionuclide biogeochemistry in nuclear legacy management.

Atmospheric deposition impacts on nutrients and biological budgets of the Mediterranean Sea, results from the high resolution coupled model NEMOMED12/PISCES

Science.gov (United States)

Richon, Camille; Dutay, Jean-Claude; Dulac, François; Desboeufs, Karine; Nabat, Pierre; Guieu, Cécile; Aumont, Olivier; Palmieri, Julien

2016-04-01

Atmospheric deposition is at present not included in regional oceanic biogeochemical models of the Mediterranean Sea, whereas, along with river inputs, it represents a significant source of nutrients at the basin scale, especially through intense desert dust events. Moreover, observations (e.g. DUNE campaign, Guieu et al. 2010) show that these events significantly modify the biogeochemistry of the oligotrophic Mediterranean Sea. We use a high resolution (1/12°) version of the 3D coupled model NEMOMED12/PISCES to investigate the effects of high resolution atmospheric dust deposition forcings on the biogeochemistry of the Mediterranean basin. The biogeochemical model PISCES represents the evolution of 24 prognostic tracers including five nutrients (nitrate, ammonium, phosphate, silicate and iron) and two phytoplankton and zooplanktons groups (Palmiéri, 2014). From decadal simulations (1982-2012) we evaluate the influence of natural dust and anthropogenic nitrogen deposition on the budget of nutrients in the basin and its impact on the biogeochemistry (primary production, plankton distributions...). Our results show that natural dust deposition accounts for 15% of global PO4 budget and that it influences primarily the southern part of the basin. Anthropogenic nitrogen accounts for 50% of bioavailable N supply for the northern part. Deposition events significantly affect biological production; primary productivity enhancement can be as high as 30% in the areas of high deposition, especially during the stratified period. Further developments of the model will include 0D and 1D modeling of bacteria in the frame of the PEACETIME project.

Elevated CO2 and warming induce substantial and persistent declines in forage quality irrespective of warming in mixed grass prairie

Science.gov (United States)

Increasing atmospheric [CO2] and temperature are expected to affect the productivity, species composition, biogeochemistry, and therefore the quantity and quality of forage available to herbivores in rangeland ecosystems. Both elevated CO2 (eCO2) and warming affect plant tissue chemistry through mul...

Influence of hydraulics on the uptake of ammonium by two freshwater plants

NARCIS (Netherlands)

Bal, K.D.; Brion, N.; Woule-Ebongué, V.; Schoelynck, J.; Jooste, A.; Barrón, C.; Dehairs, F.; Meire, P.; Bouma, T.J.

2013-01-01

1 Macrophytes are important in the biogeochemistry of flowing rivers, although most information so far has relied on measurements of nutrients in plant tissues. This yields only indirect information on the nutrient uptake fluxes by roots and shoots and about nutrient translocation between roots

Elevated CO2 induces substantial and persistent declines in forage digestibility and protein content irrespective of warming in mixed-grass prairie

Science.gov (United States)

Increasing atmospheric [CO2] and temperature are expected to affect the productivity, species composition, biogeochemistry, and therefore the quantity and quality of forage available to herbivores in rangeland ecosystems. Both elevated CO2 (eCO2) and warming affect plant tissue chemistry through mul...

Spectroscopic Evidence of Uranium Immobilization in Acidic Wetlands by Natural Organic Matter and Plant Roots

Science.gov (United States)

Biogeochemistry of uranium in wetlands plays important roles in U immobilization in storage ponds of U mining and processing facilities but has not been well understood. The objective of this work was to study molecular mechanisms responsible for high U retention by Savannah Ri...

Sedimentary oxygen dynamics in a seasonally hypoxic basin

NARCIS (Netherlands)

Seitaj, D.; Sulu-Gambari, F; Burdorf, L.D.W.; Romero-Ramirez, A.; Maire, O.; Malkin, S.Y.; Slomp, C. P.; Meysman, F.J.R.

2017-01-01

Seasonal hypoxia refers to the oxygen depletion that occurs in summer in the bottom water of stratified systems, and is increasingly observed in coastal areas worldwide. The process induces a seasonal cycle on the biogeochemistry of the underlying sediments, which remains poorly quantified. Here, we

Nitrogen transport, transformation, and retention in the Three Gorges Reservoir : A mass balance approach

NARCIS (Netherlands)

Ran, Xiangbin; Bouwman, Lex; Yu, Zhigang; Beusen, Arthur; Chen, Hongtao; Yao, Qingzhen

2017-01-01

Dam construction in river systems affects the biogeochemistry of nitrogen (N), yet most studies on N cycling in reservoirs do not consider the transformations and retention of the different N species. This study addresses the N inputs, transport, transformations, and retention in the Three Gorges

African Journals Online: Browse Alphabetically -- letter I

African Journals Online (AJOL)

Items 1 - 33 of 33 ... However, there is also room for issues of the larger international order or ... The journal is an initiative of the Phenomenology Research Group .... clinical chemistry, hydrochemistry, agrochemistry, geochemistry and biogeochemistry. .... Faculty of Health Sciences and Technology and Faculty of Dentistry.

A 3D SPM model for biogeochemical modelling, with application to the northwest European continental shelf

NARCIS (Netherlands)

van der Molen, J.; Ruardij, P.; Greenwood, N.

2017-01-01

An SPM resuspension method was developed for use in 3D coupled hydrodynamics-biogeochemistry models to feed into simulations of the under-water light climate and and primary production. The method uses a single mineral fine SPM component for computational efficiency, with a concentration-dependent

Sedimentary oxygen dynamics in a seasonally hypoxic basin

NARCIS (Netherlands)

Seitaj, Dorina; Sulu-Gambari, Fatimah; Burdorf, Laurine D. W.; Romero-Ramirez, Alicia; Maire, Olivier; Malkin, Sairah Y.; Slomp, Caroline P.; Meysman, Filip J.R.

Seasonal hypoxia refers to the oxygen depletion that occurs in summer in the bottom water of stratified systems, and is increasingly observed in coastal areas worldwide. The process induces a seasonal cycle on the biogeochemistry of the underlying sediments, which remains poorly quantified. Here, we

Reply to Comments on Measuring marine iron(III) complexes by CLE-AdSV

NARCIS (Netherlands)

Town, R.M.; Leeuwen, van H.P.

2005-01-01

The interpretation of CLE-AdSV based iron(iii) speciation data for marine waters has been called into question in light of the kinetic features of the measurement. The implications of the re-think may have consequences for understanding iron biogeochemistry and its impact on ecosystem functioning.

Thinking outside the channel: modeling nitrogen cycling in networked river ecosystems

Science.gov (United States)

Ashley M. Helton; Geoffrey C. Poole; Judy L. Meyer; Wilfred M. Wollheim; Bruce J. Peterson; Patrick J. Mulholland; Emily S. Bernhardt; Jack A. Stanford; Clay Arango; Linda R. Ashkenas; Lee W. Cooper; Walter K. Dodds; Stanley V. Gregory; Robert O. Hall; Stephen K. Hamilton; Sherri L. Johnson; William H. McDowell; Jody D. Potter; Jennifer L. Tank; Suzanne M. Thomas; H. Maurice Valett; Jackson R. Webster; Lydia Zeglin

2011-01-01

Agricultural and urban development alters nitrogen and other biogeochemical cycles in rivers worldwide. Because such biogeochemical processes cannot be measured empirically across whole river networks, simulation models are critical tools for understanding river-network biogeochemistry. However, limitations inherent in current models restrict our ability to simulate...

Copper in the sea: a bibliography

Energy Technology Data Exchange (ETDEWEB)

Schmidt, R.L.

1977-04-01

Life in the sea is vulnerable to the influx of trace metals resulting from man's activities. Although many pollutants introduced to the sea eventually degrade to less harmful forms, trace metals accumulate in sediments and have a continued potential for effect on biota. Copper has a toxic potential exceeding all other metals due to the quantity discharged and its toxicological effect. Fortunately, copper in the oceans is rendered less bioavailable or less toxic by its ready interaction with the complex chemical components of seawater. This bibliography was prepared to illustrate the status of current knowledge of the biogeochemistry of copper and to aid the development of research programs to define the effects of copper discharged to the marine environment. The references are categorized to aid the reader to locate literature concerning specific aspects of the biogeochemistry of copper. A brief comment describing the important findings in each category is given. Although this bibliography is not exhaustive, the listed references are likely representative of current knowledge.

δ13C-CH4 in ice core samples

DEFF Research Database (Denmark)

Sperlich, Peter

Ice core records of δ13C-CH4 reflect the variability of CH4 biogeochemistry in response to climate change and show this system is far more complex than expected. The first part of this work is concerned with the development of analytical techniques that allow 1) precise referencing and 2) measure......Ice core records of δ13C-CH4 reflect the variability of CH4 biogeochemistry in response to climate change and show this system is far more complex than expected. The first part of this work is concerned with the development of analytical techniques that allow 1) precise referencing and 2......) measurements of δ13C-CH4 in ice core samples as is required when δ13C-CH4 records that are measured in several laboratories are merged for analysis. Both the referencing and measurement techniques have been compared to further laboratories which proofed the accuracy of the analytical systems. The second part...

Application of an in-situ soil sampler for assessing subsurface biogeochemical dynamics in a diesel-contaminated coastal site during soil flushing operations.

Science.gov (United States)

Kwon, Man Jae; O'Loughlin, Edward J; Ham, Baknoon; Hwang, Yunho; Shim, Moojoon; Lee, Soonjae

2018-01-15

Subsurface biogeochemistry and contaminant dynamics during the remediation of diesel-contamination by in-situ soil flushing were investigated at a site located in a coastal region. An in-situ sampler containing diesel-contaminated soils separated into two size fractions (fraction were much higher than those in the fraction. Increases in soil TPH in DH1 were consistent with the expected outcomes following well pumping and surfactant injection used to enhance TPH extraction. However, the number of diesel-degrading microorganisms decreased after surfactant injection. 16S-rRNA gene-based analysis also showed that the community composition and diversity depended on both particle size and diesel contamination. The multidisciplinary approach to the contaminated site assessments showed that soil flushing with surfactant enhanced diesel extraction, but negatively impacted in-situ diesel biodegradation as well as groundwater quality. The results also suggest that the in-situ sampler can be an effective monitoring tool for subsurface biogeochemistry as well as contaminant dynamics. Copyright © 2017 Elsevier Ltd. All rights reserved.

Inorganic arsenic and iron(II) distributions in sediment porewaters investigated by a combined DGTcolourimetric DET technique

DEFF Research Database (Denmark)

Bennett, William W.; Teasdale, Peter R.; Welsh, David T.

2012-01-01

A new approach for investigating the biogeochemistry of inorganic arsenic and iron(II) in freshwater, estuarine and marine sediments is reported. The recently developed Metsorb diffusive gradients in thin films (DGT) technique for the measurement of total inorganic arsenic and the colourimetric d...... highly representative assessment of the biogeochemical status of arsenic and iron in a variety of natural sediments, including groundwater sediments where mobilised arsenic is responsible for significant human health risks.......A new approach for investigating the biogeochemistry of inorganic arsenic and iron(II) in freshwater, estuarine and marine sediments is reported. The recently developed Metsorb diffusive gradients in thin films (DGT) technique for the measurement of total inorganic arsenic and the colourimetric...... diffusive equilibration in thin films (DET) technique for the measurement of iron(II), were utilised in combination to determine co-located depth profiles of both solutes in sediment porewaters. DGT-measured porewater arsenic concentrations were typically less than 40nM, whereas iron(II) concentrations...

Controls on O2 Production in Cyanobacterial Mats and Implications for Earth's Oxygenation

Science.gov (United States)

Dick, Gregory J.; Grim, Sharon L.; Klatt, Judith M.

2018-05-01

Cyanobacterial mats are widely assumed to have been globally significant hot spots of biogeochemistry and evolution during the Archean and Proterozoic, but little is known about their quantitative contributions to global primary productivity or Earth's oxygenation. Modern systems show that mat biogeochemistry is the outcome of concerted activities and intimate interactions between various microbial metabolisms. Emerging knowledge of the regulation of oxygenic and sulfide-driven anoxygenic photosynthesis by versatile cyanobacteria, and their interactions with sulfur-oxidizing bacteria and sulfate-reducing bacteria, highlights how ecological and geochemical processes can control O2 production in cyanobacterial mats in unexpected ways. This review explores such biological controls on O2 production. We argue that the intertwined effects of light availability, redox geochemistry, regulation and competition of microbial metabolisms, and biogeochemical feedbacks result in emergent properties of cyanobacterial mat communities that are all critical yet largely overlooked mechanisms to potentially explain the protracted nature of Earth's oxygenation.

U.S. ocean acidification researchers: First national meeting

Science.gov (United States)

Cooley, Sarah R.; Kleypas, Joan; Benway, Heather

2011-09-01

Ocean Carbon and Biogeochemistry Program Ocean Acidification Principal Investigators' Meeting; Woods Hole, Massachusetts, 22-24 March 2011 ; Ocean acidification (OA) is the progressive decrease in seawater pH and change in inorganic carbon chemistry caused by uptake of anthropogenic carbon dioxide (CO2). Marine species respond to OA in multiple ways that could profoundly alter ocean ecosystems and the goods and services they provide to human communities. With major support from the National Oceanic and Atmospheric Administration (NOAA) and the U.S. National Science Foundation (NSF) and additional support from the U.S. Environmental Protection Agency (EPA), the Naval Postgraduate School, and the U.S. Geological Survey (USGS), the Ocean Carbon and Biogeochemistry (OCB) Project Office and Ocean Acidification Subcommittee (http://www.us-ocb.org/about/subcommittees.html) held the first multidisciplinary workshop for U.S. OA researchers at the Woods Hole Oceanographic Institution. The 112 attendees included ecologists, paleoceanographers, instrumentation specialists, chemists, biologists, economists, ocean and ecosystem modelers, and communications specialists.

Dynamics of organic and inorganic carbon across contiguous mangrove and seagrass systems (Gazi Bay, Kenya)

NARCIS (Netherlands)

Bouillon, S.; Dehairs, F.; Velimirov, B.; Abril, G.; Borges, A.V.

2007-01-01

We report on the water column biogeochemistry in adjacent mangrove and seagrass systems in Gazi Bay (Kenya), with a focus on assessing the sources and cycling of organic and inorganic carbon. Mangrove and seagrass-derived material was found to be the dominant organic carbon sources in the water

Glacial-interglacial variability in ocean oxygen and phosphorus in a global biogeochemical model

NARCIS (Netherlands)

Palastanga, V.; Slomp, C.P.; Heinze, C.

2013-01-01

Increased transfer of particulate matter from continental shelves to the open ocean during glacials may have had a major impact on the biogeochemistry of the ocean. Here, we assess the response of the coupled oceanic cycles of oxygen, carbon, phosphorus, and iron to the input of particulate organic

Early diagenesis of manganese, iron and phosphorus in European continental margin sediments

NARCIS (Netherlands)

Zee, C. van der

2002-01-01

This thesis describes the results of a project that was carried out as a part of the Sedimentary Manganese and Iron cycLEs (SMILE) research program funded by the Netherlands Organisation of Scientific Research (NWO/ALW). SMILE aimed at studying the biogeochemistry of iron and manganese cycles in

Early diagenesis of Manganese, Iron and Phosphorus in European continental margin sediments

NARCIS (Netherlands)

van der Zee, C.

2002-01-01

This thesis describes the results of a project that was carried out as a part of the Sedimentary Manganese and Iron cycLEs (SMILE) research program funded by the Netherlands Organisation of Scientific Research (NWO/ALW). SMILE aimed at studying the biogeochemistry of iron and manganese cycles in

Leaf pH as a plant trait: species-driven rather than soil-driven variation.

NARCIS (Netherlands)

Cornelissen, J.H.C.; Sibma, F.; van Logtestijn, R.S.P; Broekman, R.A.; Thompson, K.

2011-01-01

Interspecific variation in plant functional traits is fast becoming popular as a tool for understanding and predicting ecosystem biogeochemistry as dependent on vegetation composition. Leaf pH has recently been shown to be a promising new candidate trait for this purpose. But how robust is leaf pH

Geographic, environmental and biotic sources of variation in the nutrient relations of tropical montane forests

Science.gov (United States)

James W. Dalling; Katherine Heineman; Grizelle Gonzalez; Rebecca Ostertag

2016-01-01

Tropicalmontane forests (TMF) are associated with a widely observed suite of characteristics encompassing forest structure, plant traits and biogeochemistry.With respect to nutrient relations, montane forests are characterized by slow decomposition of organic matter, high investment in below-ground biomass and poor litter quality, relative to tropical lowland forests....

Modelling soil anaerobiosis from water retention characteristics and soil respiration

NARCIS (Netherlands)

Schurgers, G.; Dörsch, P.; Bakken, L.; Leffelaar, P.A.; Egil Haugen, L.

2006-01-01

Oxygen is a prerequisite for some and an inhibitor to other microbial functions in soils, hence the temporal and spatial distribution of oxygen within the soil matrix is crucial in soil biogeochemistry and soil biology. Various attempts have been made to model the anaerobic fraction of the soil

Is it possible to determine formation processes of organic deposits through polysaccharides? Pilot study from the prehistoric site in Brandys nad Labem, Czech Republic

Czech Academy of Sciences Publication Activity Database

Rejšek, K.; Turek, J.; Vranová, V.; Hadacz, R.; Lisá, Lenka

2017-01-01

Roč. 27, č. 9 (2017), s. 1273-1280 ISSN 0959-6836 Institutional support: RVO:67985831 Keywords : C content * geoarchaeology * humic substances * N content * soil biogeochemistry * sugars * the Early Iron Age * the Final Bronze Age Subject RIV: DF - Soil Science OBOR OECD: Soil science Impact factor: 2.324, year: 2016

Microbial ecology and biogeochemistry of continental Antarctic soils.

Science.gov (United States)

Cowan, Don A; Makhalanyane, Thulani P; Dennis, Paul G; Hopkins, David W

2014-01-01

The Antarctica Dry Valleys are regarded as the coldest hyperarid desert system on Earth. While a wide variety of environmental stressors including very low minimum temperatures, frequent freeze-thaw cycles and low water availability impose severe limitations to life, suitable niches for abundant microbial colonization exist. Antarctic desert soils contain much higher levels of microbial diversity than previously thought. Edaphic niches, including cryptic and refuge habitats, microbial mats and permafrost soils all harbor microbial communities which drive key biogeochemical cycling processes. For example, lithobionts (hypoliths and endoliths) possess a genetic capacity for nitrogen and carbon cycling, polymer degradation, and other system processes. Nitrogen fixation rates of hypoliths, as assessed through acetylene reduction assays, suggest that these communities are a significant input source for nitrogen into these oligotrophic soils. Here we review aspects of microbial diversity in Antarctic soils with an emphasis on functionality and capacity. We assess current knowledge regarding adaptations to Antarctic soil environments and highlight the current threats to Antarctic desert soil communities.

Modeling carbon and nitrogen biogeochemistry in forest ecosystems

Science.gov (United States)

Changsheng Li; Carl Trettin; Ge Sun; Steve McNulty; Klaus Butterbach-Bahl

2005-01-01

A forest biogeochemical model, Forest-DNDC, was developed to quantify carbon sequestration in and trace gas emissions from forest ecosystems. Forest-DNDC was constructed by integrating two existing moels, PnET and DNDC, with several new features including nitrification, forest litter layer, soil freezing and thawing etc, PnET is a forest physiological model predicting...

Ocean biogeochemistry modeled with emergent trait-based genomics

Science.gov (United States)

Coles, V. J.; Stukel, M. R.; Brooks, M. T.; Burd, A.; Crump, B. C.; Moran, M. A.; Paul, J. H.; Satinsky, B. M.; Yager, P. L.; Zielinski, B. L.; Hood, R. R.

2017-12-01

Marine ecosystem models have advanced to incorporate metabolic pathways discovered with genomic sequencing, but direct comparisons between models and “omics” data are lacking. We developed a model that directly simulates metagenomes and metatranscriptomes for comparison with observations. Model microbes were randomly assigned genes for specialized functions, and communities of 68 species were simulated in the Atlantic Ocean. Unfit organisms were replaced, and the model self-organized to develop community genomes and transcriptomes. Emergent communities from simulations that were initialized with different cohorts of randomly generated microbes all produced realistic vertical and horizontal ocean nutrient, genome, and transcriptome gradients. Thus, the library of gene functions available to the community, rather than the distribution of functions among specific organisms, drove community assembly and biogeochemical gradients in the model ocean.

Groundwater Radioiodine: Prevalence, Biogeochemistry, And Potential Remedial Approaches

International Nuclear Information System (INIS)

Denham, M.; Kaplan, D.; Yeager, C.

2009-01-01

Iodine-129 ( 129 I) has not received as much attention in basic and applied research as other contaminants associated with DOE plumes. These other contaminants, such as uranium, plutonium, strontium, and technetium are more widespread and exist at more DOE facilities. Yet, at the Hanford Site and the Savannah River Site 129 I occurs in groundwater at concentrations significantly above the primary drinking water standard and there is no accepted method for treating it, other than pump-and-treat systems. With the potential arrival of a 'Nuclear Renaissance', new nuclear power facilities will be creating additional 129 I waste at a rate of 1 Ci/gigawatts energy produced. If all 22 proposed nuclear power facilities in the U.S. get approved, they will produce more 129 I waste in seven years than presently exists at the two facilities containing the largest 129 I inventories, (∼146 Ci 129 I at the Hanford Site and the Savannah River Site). Hence, there is an important need to fully understand 129 I behavior in the environment to clean up existing plumes and to support the expected future expansion of nuclear power production. 129 I is among the key risk drivers at all DOE nuclear disposal facilities where 129 I is buried, because of its long half-life (16 million years), high toxicity (90% of the body's iodine accumulates in the thyroid), high inventory, and perceived high mobility in the subsurface environment. Another important reason that 129 I is a key risk driver is that there is the uncertainty regarding its biogeochemical fate and transport in the environment. We typically can define 129 I mass balance and flux at sites, but can not accurately predict its response to changes in the environment. This uncertainty is in part responsible for the low drinking water standard, 1 pCi/L 129 I, and the low permissible inventory limits (Ci) at the Savannah River Site, Hanford Site, and the former Yucca Mountain disposal facilities. The objectives of this report are to: (1) compile the background information necessary to understand behavior of 129 I in the environment, (2) discuss sustainable remediation approaches to 129 I contaminated groundwater, and (3) identify areas of research that will facilitate remediation of 129 I contaminated areas on DOE sites. Lines of scientific inquiry that would significantly advance the goals of basic and applied research programs for accelerating 129 I environmental remediation and reducing uncertainty associated with disposal of 129 I waste are: (1) Evaluation of amendments or other treatment systems that can sequester subsurface groundwater 129 I. (2) Develop analytical techniques for measurement of total 129 I that eliminate the necessity of collecting and shipping large samples of groundwater. (3) Develop and evaluate ways to manipulate areas with organic-rich soil, such as wetlands, to maximize 129 I sorption, minimizing releases during anoxic conditions. (4) Develop analytical techniques that can identify the various 129 I species in the subsurface aqueous and solid phases at ambient concentrations and under ambient conditions. (5) Identify the mechanisms and factors controlling iodine-natural organic matter interactions at appropriate environmental concentrations. (6) Understand the biological processes that transform iodine species throughout different compartments of subsurface waste sites and the role that these processes have on 129 I flux

The Role of B Vitamins in Marine Biogeochemistry

Science.gov (United States)

Sañudo-Wilhelmy, Sergio A.; Gómez-Consarnau, Laura; Suffridge, Christopher; Webb, Eric A.

2014-01-01

The soluble B vitamins (B1, B7, and B12) have long been recognized as playing a central metabolic role in marine phytoplankton and bacteria; however, the importance of these organic external metabolites in marine ecology has been largely disregarded, as most research has focused on inorganic nutrients and trace metals. Using recently available genomic data combined with culture-based surveys of vitamin auxotrophy (i.e., vitamin requirements), we show that this auxotrophy is widespread in the marine environment and occurs in both autotrophs and heterotrophs residing in oligotrophic and eutrophic environments. Our analysis shows that vitamins originate from the activities of some bacteria and algae and that taxonomic changes observed in marine phytoplankton communities could be the result of their specific vitamin requirements and/or vitamin availability. Dissolved vitamin concentration measurements show that large areas of the world ocean are devoid of B vitamins, suggesting that vitamin limitation could be important for the efficiency of carbon and nitrogen fixation in those regions.

Microbial ecology and biogeochemistry of continental Antarctic soils

Directory of Open Access Journals (Sweden)

Don A Cowan

2014-04-01

Full Text Available The Antarctica Dry Valleys are regarded as the coldest hyperarid desert system on Earth. While a wide variety of environmental stressors including very low minimum temperatures, frequent freeze-thaw cycles and low water availability impose severe limitations to life, suitable niches for abundant microbial colonization exist. Antarctic desert soils contain much higher levels of microbial diversity than previously thought. Edaphic niches, including cryptic and refuge habitats, microbial mats and permafrost soils all harbour microbial communities which drive key biogeochemical cycling processes. For example, lithobionts (hypoliths and endoliths possess a genetic capacity for nitrogen and carbon cycling, polymer degradation and other system processes. Nitrogen fixation rates of hypoliths, as assessed through acetylene reduction assays, suggest that these communities are a significant input source for nitrogen into these oligotrophic soils. Here we review aspects of microbial diversity in Antarctic soils with an emphasis on functionality and capacity. We assess current knowledge regarding adaptations to Antarctic soil environments and highlight the current threats to Antarctic desert soil communities.

Biogeochemistry of molecular hydrogen in sulfate-reducing sediments

Energy Technology Data Exchange (ETDEWEB)

Novelli, P.C.

1987-01-01

Concentrations of molecular hydrogen (H{sub 2}) have been measured using an equilibration-vacuum transfer method coupled to mercuric oxide reduction. In hemipelagic sediments (Eastern Tropical North Pacific (ETNP)) and bioturbated sediments (Princess Louisa Inlet, BC (PLI), and Buzzards Bay, MA (BB)) hydrogen levels were lowest in surface sediments and increased with depth. Sharp increases in H{sub 2} concentrations were observed just below the zone of bioturbation (PLI and BB), or below the depth of nitrate depletion (ETNP). Apparent hydrogen production rates were determined in laboratory incubations of sediments amended with inhibitors of sulfate reduction and methanogenesis. Hydrogen production ranged from 30 nmol 1{sup {minus}1} h{sup {minus}1} to 20 {times} 10{sup 3} nmol 1{sup {minus}1} h{sup {minus}1}. Apparent hydrogen production rates generally decreased in parallel with measured sulfate reduction rates. Experiments examined the response of apparent H{sub 2} production rates to additions of both specific organic chemicals and to additions of naturally occurring, complex organic materials. Organic sources typically considered labile (sucrose, and algae) stimulated apparent production up to a factor of 70. More refractory compounds (humic acids, chitin), stimulated rates of hydrogen production only slightly or not at all. These results show that hydrogen production is, in part, a function of the type of organic matter being degraded.

Acid mine drainage biogeochemistry at Iron Mountain, California

Directory of Open Access Journals (Sweden)

Gihring Thomas M

2004-06-01

Full Text Available The Richmond Mine at Iron Mountain, Shasta County, California, USA provides an excellent opportunity to study the chemical and biological controls on acid mine drainage (AMD generation in situ, and to identify key factors controlling solution chemistry. Here we integrate four years of field-based geochemical data with 16S rRNA gene clone libraries and rRNA probe-based studies of microbial population structure, cultivation-based metabolic experiments, arsenopyrite surface colonization experiments, and results of intermediate sulfur species kinetics experiments to describe the Richmond Mine AMD system. Extremely acidic effluent (pH between 0.5 and 0.9 resulting from oxidation of approximately 1 × 105 to 2 × 105 moles pyrite/day contains up to 24 g/1 Fe, several g/1 Zn and hundreds of mg/l Cu. Geochemical conditions change markedly over time, and are reflected in changes in microbial populations. Molecular analyses of 232 small subunit ribosomal RNA (16S rRNA gene sequences from six sites during a sampling time when lower temperature (0.8 conditions predominated show the dominance of Fe-oxidizing prokaryotes such as Ferroplasma and Leptospirillum in the primary drainage communities. Leptospirillum group III accounts for the majority of Leptospirillum sequences, which we attribute to anomalous physical and geochemical regimes at that time. A couple of sites peripheral to the main drainage, "Red Pool" and a pyrite "Slump," were even higher in pH (>1 and the community compositions reflected this change in geochemical conditions. Several novel lineages were identified within the archaeal Thermoplasmatales order associated with the pyrite slump, and the Red Pool (pH 1.4 contained the only population of Acidithiobacillus. Relatively small populations of Sulfobacillus spp. and Acidithiobacillus caldus may metabolize elemental sulfur as an intermediate species in the oxidation of pyritic sulfide to sulfate. Experiments show that elemental sulfur which forms on pyrite surfaces is resistant to most oxidants; its solublization by unattached cells may indicate involvement of a microbially derived electron shuttle. The detachment of thiosulfate (S2O32- as a leaving group in pyrite oxidation should result in the formation and persistence of tetrathionate in low pH ferric iron-rich AMD solutions. However, tetrathionate is not observed. Although a S2O32--like species may form as a surface-bound intermediate, data suggest that Fe3+ oxidizes the majority of sulfur to sulfate on the surface of pyrite. This may explain why microorganisms that can utilize intermediate sulfur species are scarce compared to Fe-oxidizing taxa at the Richmond Mine site.

Simplifiying global biogeochemistry models to evaluate methane emissions

Science.gov (United States)

Gerber, S.; Alonso-Contes, C.

2017-12-01

Process-based models are important tools to quantify wetland methane emissions, particularly also under climate change scenarios, evaluating these models is often cumbersome as they are embedded in larger land-surface models where fluctuating water table and the carbon cycle (including new readily decomposable plant material) are predicted variables. Here, we build on these large scale models but instead of modeling water table and plant productivity we provide values as boundary conditions. In contrast, aerobic and anaerobic decomposition, as well as soil column transport of oxygen and methane are predicted by the model. Because of these simplifications, the model has the potential to be more readily adaptable to the analysis of field-scale data. Here we determine the sensitivity of the model to specific setups, parameter choices, and to boundary conditions in order to determine set-up needs and inform what critical auxiliary variables need to be measured in order to better predict field-scale methane emissions from wetland soils. To that end we performed a global sensitivity analysis that also considers non-linear interactions between processes. The global sensitivity analysis revealed, not surprisingly, that water table dynamics (both mean level and amplitude of fluctuations), and the rate of the carbon cycle (i.e. net primary productivity) are critical determinants of methane emissions. The depth-scale where most of the potential decomposition occurs also affects methane emissions. Different transport mechanisms are compensating each other to some degree: If plant conduits are constrained, methane emissions by diffusive flux and ebullition compensate to some degree, however annual emissions are higher when plants help to bypass methanotrophs in temporally unsaturated upper layers. Finally, while oxygen consumption by plant roots help creating anoxic conditions it has little effect on overall methane emission. Our initial sensitivity analysis helps guiding further model development and improvement. However, an important goal for our model is to use it in field settings as a tool to deconvolve the different processes that contribute to the net transfer of methane from soils to atmosphere.

Molecular Biogeochemistry of Modern and Ancient Marine Microbes

Science.gov (United States)

2010-02-01

jahnii AF163148 Isochrysis sp. AB183617 Emiliania huxleyi M87327 Chrysochromulina campanulifera AJ246273 Chrysochromulina throndsenii AJ246277... Emiliania huxleyi Skeletonema costatum hotChlE9, syn-A hotChlC1, med4-B hotChlD9, med4-B hotChlD12, med4-B hotChlE5, syn-A hotChlE4, syn-A hotChlA9, med4...straight-chain C37- C39 methyl and ethyl ketones in marine sediments and a coccolithophore Emiliania huxleyi . Advances in Organic Geochemistry 1979

Biogeochemistry of vertebrate decomposition in a forest ecosystem

Science.gov (United States)

Decomposing plants and animals provide critical nutrients for ecosystems, including forests. During vertebrate decay, the rapid release of limiting nutrients, including N, P, C, and S fundamentally transforms the soil environment by stimulating endogenous organisms. The goal of this study was t...

GROUNDWATER RADIOIODINE: PREVALENCE, BIOGEOCHEMISTRY, AND POTENTIAL REMEDIAL APPROACHES

Energy Technology Data Exchange (ETDEWEB)

Denham, M.; Kaplan, D.; Yeager, C.

2009-09-23

Iodine-129 ({sup 129}I) has not received as much attention in basic and applied research as other contaminants associated with DOE plumes. These other contaminants, such as uranium, plutonium, strontium, and technetium are more widespread and exist at more DOE facilities. Yet, at the Hanford Site and the Savannah River Site {sup 129}I occurs in groundwater at concentrations significantly above the primary drinking water standard and there is no accepted method for treating it, other than pump-and-treat systems. With the potential arrival of a 'Nuclear Renaissance', new nuclear power facilities will be creating additional {sup 129}I waste at a rate of 1 Ci/gigawatts energy produced. If all 22 proposed nuclear power facilities in the U.S. get approved, they will produce more {sup 129}I waste in seven years than presently exists at the two facilities containing the largest {sup 129}I inventories, ({approx}146 Ci {sup 129}I at the Hanford Site and the Savannah River Site). Hence, there is an important need to fully understand {sup 129}I behavior in the environment to clean up existing plumes and to support the expected future expansion of nuclear power production. {sup 129}I is among the key risk drivers at all DOE nuclear disposal facilities where {sup 129}I is buried, because of its long half-life (16 million years), high toxicity (90% of the body's iodine accumulates in the thyroid), high inventory, and perceived high mobility in the subsurface environment. Another important reason that {sup 129}I is a key risk driver is that there is the uncertainty regarding its biogeochemical fate and transport in the environment. We typically can define {sup 129}I mass balance and flux at sites, but can not accurately predict its response to changes in the environment. This uncertainty is in part responsible for the low drinking water standard, 1 pCi/L {sup 129}I, and the low permissible inventory limits (Ci) at the Savannah River Site, Hanford Site, and the former Yucca Mountain disposal facilities. The objectives of this report are to: (1) compile the background information necessary to understand behavior of {sup 129}I in the environment, (2) discuss sustainable remediation approaches to {sup 129}I contaminated groundwater, and (3) identify areas of research that will facilitate remediation of {sup 129}I contaminated areas on DOE sites. Lines of scientific inquiry that would significantly advance the goals of basic and applied research programs for accelerating {sup 129}I environmental remediation and reducing uncertainty associated with disposal of {sup 129}I waste are: (1) Evaluation of amendments or other treatment systems that can sequester subsurface groundwater {sup 129}I. (2) Develop analytical techniques for measurement of total {sup 129}I that eliminate the necessity of collecting and shipping large samples of groundwater. (3) Develop and evaluate ways to manipulate areas with organic-rich soil, such as wetlands, to maximize {sup 129}I sorption, minimizing releases during anoxic conditions. (4) Develop analytical techniques that can identify the various {sup 129}I species in the subsurface aqueous and solid phases at ambient concentrations and under ambient conditions. (5) Identify the mechanisms and factors controlling iodine-natural organic matter interactions at appropriate environmental concentrations. (6) Understand the biological processes that transform iodine species throughout different compartments of subsurface waste sites and the role that these processes have on {sup 129}I flux.

Biogeochemistry: Some Opportunities and Challenges for the Future

International Nuclear Information System (INIS)

Likens, Gene E.

2004-01-01

There are major opportunities for big, important questions to drive biogeochemical research in the future. Some suggestions are presented, such as: what are the controls on N loss and retention in watershed-ecosystems; what are the rates and controls on biological N fixation and denitrification in diverse ecosystems; how does scale (temporal and spatial) control biogeochemical flux and cycling; what controls the apparent and actual weathering rates in terrestrial ecosystems and what is the fate of the weathered products; how can biogeochemical function best be integrated on regional to global scales; and what are the quantitative interrelationships between hydrologic cycles and biogeochemical cycles? Some brief examples and approaches to address such questions, for example, the value of multidisciplinary teams for addressing complicated questions,and the use of sophisticated tools (e.g., stable isotopes, spatial statistics, remote sensing), are presented

Biogeochemistry of iodine in aquatic and terrestrial systems

International Nuclear Information System (INIS)

Behrens, H.

2006-01-01

Full text: It was found that in surface water (rivers, lakes) iodide becomes to a large extent bound onto organic materials (mainly humic substances), the reaction being mediated by extracellular enzymes (peroxidases) which are provided by microbial activity. In soils and sediments also fixation of iodine on solid organic materials occurs by the same process. The reaction appears as a continuing iodination and simultaneous deiodination only in aerobic systems. When switching to anaerobic conditions, only the deiodination resumes resulting in a complete release of the organoiodine into dissolved iodide. (author)

The biogeochemistry of anchialine caves: Progress and possibilities

Science.gov (United States)

Pohlman, John W.

2011-01-01

Recent investigations of anchialine caves and sinkholes have identified complex food webs dependent on detrital and, in some cases, chemosynthetically produced organic matter. Chemosynthetic microbes in anchialine systems obtain energy from reduced compounds produced during organic matter degradation (e.g., sulfide, ammonium, and methane), similar to what occurs in deep ocean cold seeps and mud volcanoes, but distinct from dominant processes operating at hydrothermal vents and sulfurous mineral caves where the primary energy source is mantle derived. This review includes case studies from both anchialine and non-anchialine habitats, where evidence for in situ chemosynthetic production of organic matter and its subsequent transfer to higher trophic level metazoans is documented. The energy sources and pathways identified are synthesized to develop conceptual models for elemental cycles and energy cascades that occur within oligotrophic and eutrophic anchialine caves. Strategies and techniques for testing the hypothesis of chemosynthesis as an active process in anchialine caves are also suggested.

Chemosynthesis in deep-sea red-clay: Linking concepts to probable martian life

Digital Repository Service at National Institute of Oceanography (India)

Das, A.; Mourya, B.S.; Mamatha, S.S.; Khadge, N.H.; LokaBharathi, P.A.

of microbial biogeochemistry are used in the pres- ent deep-sea analogue studies and would be imple- mented for actual Martian soil samples in future: Microbial abundance in terms of total counts » Diversity of culture dependent and independent Chemos... soils done earlier by Viking I robots [5, Bianciardi et. al, 2012

Technological enhancement of natural radionuclides in the marine environment

International Nuclear Information System (INIS)

McDonald, P.; Baxter, M.S.; Scott, E.M.

1996-01-01

This review summarizes aspects of technologically enhanced radioactivity in the UK marine environment, considers briefly related investigations in western Europe and then discusses some models for the kinetics of series decay and ingrowth which can be applied to technological inputs of series members to the marine environment and to their differential elemental biogeochemistries. (author)

Soil C and N storage and microbial biomass in US southern pine forests: Influence of forest management

Science.gov (United States)

J.A. Foote; T.W. Boutton; D.A. Scott

2015-01-01

Land management practices have strong potential to modify the biogeochemistry of forest soils, with implications for the long-term sustainability and productivity of forestlands. The Long-Term Soil Productivity (LTSP) program, a network of 62 sites across the USA and Canada, was initiated to address concerns over possible losses of soil productivity due to soil...

Effects of ozone depletion and UV-B radiation on humans and the environment

Energy Technology Data Exchange (ETDEWEB)

Solomon, K.R. [Guelph Univ., ON (Canada). Centre for Toxicology

2008-03-15

This paper summarized current research related to the effects of ultraviolet (UV-B) radiation on human health and the environment. Effects included direct responses in human as well as effects on biogeochemistry and the environmental cycling of substances. UV radiation has many harmful effects on the skin, eyes, and immune systems of humans. Skin cancer is a leading cause of death among fair-skinned populations exposed to UV radiation. The role of UV radiation in cataract formation was discussed, as well as issues related to the suppression of immune responses. The link between sunlight exposure and vitamin D levels in human populations was examined. The effects of UV radiation on terrestrial and aquatic ecosystems were reviewed. Issues related to biogeochemistry and atmospheric processes were discussed. The review suggested that changes in the intensity of solar UV radiation due to ozone depletion will have important repercussions for all organisms on the planet. It was concluded that the combined effects of UV-B radiation and climate change will not be easy to predict. 201 refs., 4 figs.

Desert dust and anthropogenic aerosol interactions in the Community Climate System Model coupled-carbon-climate model

Directory of Open Access Journals (Sweden)

N. Mahowald

2011-02-01

Full Text Available Coupled-carbon-climate simulations are an essential tool for predicting the impact of human activity onto the climate and biogeochemistry. Here we incorporate prognostic desert dust and anthropogenic aerosols into the CCSM3.1 coupled carbon-climate model and explore the resulting interactions with climate and biogeochemical dynamics through a series of transient anthropogenic simulations (20th and 21st centuries and sensitivity studies. The inclusion of prognostic aerosols into this model has a small net global cooling effect on climate but does not significantly impact the globally averaged carbon cycle; we argue that this is likely to be because the CCSM3.1 model has a small climate feedback onto the carbon cycle. We propose a mechanism for including desert dust and anthropogenic aerosols into a simple carbon-climate feedback analysis to explain the results of our and previous studies. Inclusion of aerosols has statistically significant impacts on regional climate and biogeochemistry, in particular through the effects on the ocean nitrogen cycle and primary productivity of altered iron inputs from desert dust deposition.

Biogeochemical Considerations Related To The Remediation Of I-129 Plumes

Energy Technology Data Exchange (ETDEWEB)

Kaplan, D. I. [Savannah River Site (SRS), Aiken, SC (United States); Yeager, C. [Los Alamos National Laboratory , Los Alamos, NM (United States); Denham, M. E. [Savannah River Site (SRS), Aiken, SC (United States); Zhang, S. [Texas A& amp; M University, Galveston, TX (United States); Xu, C. [Texas A& amp; M University, Galveston, TX (United States); Schwehr, K. A. [Texas A& amp; M University, Galveston, TX (United States); Li, H. P. [Texas A& amp; M University, Galveston, TX (United States); Brinkmeyer, R. [Texas A& amp; M University, Galveston, TX (United States); Santschi, P. H. [Texas A& amp; M University, Galveston, TX (United States)

2012-09-24

The objectives of this report were to: provide a current state of the science of radioiodine biogeochemistry relevant to its fate and transport at the Hanford Site; conduct a review of Hanford Site data dealing with groundwater {sup 129}I; and identify critical knowledge gaps necessary for successful selection, implementation, and technical defensibility in support of remediation decisions.

Experimental Acidification Causes Soil Base-Cation Depletion at the Bear Brook Watershed in Maine

Science.gov (United States)

Ivan J. Fernandez; Lindsey E. Rustad; Stephen A. Norton; Jeffrey S. Kahl; Bernard J. Cosby

2003-01-01

There is concern that changes in atmospheric deposition, climate, or land use have altered the biogeochemistry of forests causing soil base-cation depletion, particularly Ca. The Bear Brook Watershed in Maine (BBWM) is a paired watershed experiment with one watershed subjected to elevated N and S deposition through bimonthly additions of (NH4)2SO4. Quantitative soil...

Experimental evidence of two mechanisms coupling leaf-level C assimilation to rhizosphere CO2 release

Science.gov (United States)

Zachary Kayler; Claudia Keitel; Kirstin Jansen; Arthur Gessler

2017-01-01

The time span needed for carbon fixed by plants to induce belowground responses of root and rhizosphere microbial metabolic processing is of high importance for quantifying the coupling between plant canopy physiology and soil biogeochemistry, but recent observations of a rapid link cannot be explained by new assimilate transport by phloem mass flow alone. We performed...

Modeling the biogeochemical impact of atmospheric phosphate deposition from desert dust and combustion sources to the Mediterranean Sea

Science.gov (United States)

Richon, Camille; Dutay, Jean-Claude; Dulac, François; Wang, Rong; Balkanski, Yves

2018-04-01

Daily modeled fields of phosphate deposition to the Mediterranean from natural dust, anthropogenic combustion and wildfires were used to assess the effect of this external nutrient on marine biogeochemistry. The ocean model used is a high-resolution (1/12°) regional coupled dynamical-biogeochemical model of the Mediterranean Sea (NEMO-MED12/PISCES). The input fields of phosphorus are for 2005, which are the only available daily resolved deposition fields from the global atmospheric chemical transport model LMDz-INCA. Traditionally, dust has been suggested to be the main atmospheric source of phosphorus, but the LMDz-INCA model suggests that combustion is dominant over natural dust as an atmospheric source of phosphate (PO4, the bioavailable form of phosphorus in seawater) for the Mediterranean Sea. According to the atmospheric transport model, phosphate deposition from combustion (Pcomb) brings on average 40.5×10-6 mol PO4 m-2 yr-1 over the entire Mediterranean Sea for the year 2005 and is the primary source over the northern part (e.g., 101×10-6 mol PO4 m-2 yr-1 from combustion deposited in 2005 over the north Adriatic against 12.4×10-6 from dust). Lithogenic dust brings 17.2×10-6 mol PO4 m-2 yr-1 on average over the Mediterranean Sea in 2005 and is the primary source of atmospheric phosphate to the southern Mediterranean Basin in our simulations (e.g., 31.8×10-6 mol PO4 m-2 yr-1 from dust deposited in 2005 on average over the south Ionian basin against 12.4×10-6 from combustion). The evaluation of monthly averaged deposition flux variability of Pdust and Pcomb for the 1997-2012 period indicates that these conclusions may hold true for different years. We examine separately the two atmospheric phosphate sources and their respective flux variability and evaluate their impacts on marine surface biogeochemistry (phosphate concentration, chlorophyll a, primary production). The impacts of the different phosphate deposition sources on the biogeochemistry of the

Proceedings of the national symposium on current trends in geochemistry, exploration and environment: abstract book

International Nuclear Information System (INIS)

2015-01-01

The topics covered in this symposium are solid earth geochemistry and geochemical modeling, precambrian geology, geochemistry and petrogenesis, geochemistry, peterogenisis, sedimentology, chemostratigraphy and paleoclimate, atomic minerals, ferrous/non ferrous minerals, REE minerals, PGE and base metals, oil, hydrocarbons, industrial minerals and gem stones, hydrogeochemistry, environmental geochemistry, biogeochemistry and medical geology and analytical geochemistry and method development. Papers relevant to INIS are indexed separately

Biogeochemical cycling of carbon, nitrogen, and sulfur at the Howland Integrated Forest Study site, Howland, Maine

Science.gov (United States)

James W. McLaughlin; Ivan J. Fernandez; Stewart M. Goltz; Lindsey E. Rustad; Larry Zibilske

1996-01-01

The biogeochemistry of C, N, and S was studied for six years at the Howland Integrated Forest Study (HIFS) site by measuring those constituents in major above- and below-ground pools and fluxes. Leaching losses of C from the solum were much less than CO2 efflux, with a mean annual leaching rate of 31.2 kg ha-1 yr

Distribution of soil selenium in China is potentially controlled by deposition and volatilization?

Science.gov (United States)

Sun, Guo-Xin; Meharg, Andrew A.; Li, Gang; Chen, Zheng; Yang, Lei; Chen, Song-Can; Zhu, Yong-Guan

2016-02-01

Elucidating the environmental drivers of selenium (Se) spatial distribution in soils at a continental scale is essential to better understand it’s biogeochemical cycling to improve Se transfer into diets. Through modelling Se biogeochemistry in China we found that deposition and volatilization are key factors controlling distribution in surface soil, rather than bedrock-derived Se (balance in other terrestrial environments worldwide.

BOREAS TGB-4 NSA-BVP Tower Flux and Meteorological Data

Science.gov (United States)

Roulet, Nigel T.; Hall, Forrest G. (Editor); Huemmrich, Karl (Editor); Conrad, Sara K. (Editor)

2000-01-01

The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-4) team measured the exchange of heat, water, and CO2 between a boreal forest beaver pond and the atmosphere in the Northern Study Area (NSA) for the ice-free period of BOREAS. The data cover the period of 28-May to 18-Sep-1994. The data are available in tabular ASCII files.

Impact of Bacterial NO>3- Transport on Sediment Biogeochemistry

DEFF Research Database (Denmark)

Nielsen, Lars Peter

2005-01-01

Experiments demonstrated that Beggiatoa could induce a H2S-depleted suboxic zone of more than 10 mm in marine sediments and cause a divergence in sediment NO3- reduction from denitrification to dissimilatory NO3- reduction to ammonium. pH, O2, and H2S profiles indicated that the bacteria oxidized H......2S with NO3- and transported S0 to the sediment surface for aerobic oxidation....

The Amazon. Bio-geochemistry applied to river basin management

International Nuclear Information System (INIS)

Tardy, Yves; Bustillo, Vincent; Roquin, Claude; Mortatti, Jefferson; Victoria, Reynaldo

2005-01-01

A hydrochemical model, using hydrograph separation, developed for the Niger basin, has been proposed as a strategic tool for studying the watershed dynamics at any time and space scales. The model is applied to the Amazon basin, including the main channel and its major tributaries. The database corresponds to a sampling and analytical program developed over 8 cruises at 9 stations (about 70 samples), collected in the framework of the CAMREX Project (1982-1984). The model, based on a hydrograph separation of 3 reservoirs, is successful in extrapolating and predicting the geochemical and environmental behaviour of such large basins, naturally submitted to large secular or annual, regular or even catastrophic climatic oscillations. Several topics have been considered. (1) Coherence among the physico-chemical analyses: dissolved species (pH, NH 4 + , Na + , K + , Ca 2+ , Mg 2+ , NO 3 - , HCO 3 - , Cl - , DOC - , SO 4 2- , HPO 4 2- , SiO 2 , O 2 and CO 2 ), and inorganic or organic suspended load (fine and coarse fractions FSS, CSS, POCF, POCC). (2) Hydrograph separation in 3 reservoir contributions: R S , the superficial or rapid runoff, R I , the hypodermic or intermediate runoff, including the flood plain contributions, and R B the ground water or base flow. (3) Estimation of the isotopic and physico-chemical features of each of the 3 flow components: R S , R I , and R B . (4) Determination of the 3 hydrological parameters (size of the reservoir, drying up coefficient, and residence time of water), characterizing each of the 3 flow components (R S , R I , and R B ), in each of the 9 basins considered. (5) Hydrological and geochemical balances for all the parameters analysed either (a) cruise by cruise for all tributaries and the Amazon River at Obidos, or (b) among each of the 3 river flow components. (6) Isotopic data set of δ 18 O in waters, tests of coherence of the hydrograph separation model. (7) Relationships between isotopic signatures and morphological or hydroclimatical parameters characterizing the river-soil-vegetation systems. The developed procedure presents a new tool in environmental predictions, emphasizing the potentiality of geochemical interpretation of complex hydrochemical data sets

Biogeochemistry of uranium mill wastes program overview and conclusions

International Nuclear Information System (INIS)

Dreesen, D.R.

1981-05-01

The major findings and conclusions are summarized for research on uranium mill tailings for the US Department of Energy and the US Nuclear Regulatory Commission. An overview of results and interpretations is presented for investigations of 222 Rn emissions, revegetation of tailings and mine spoils, and trace element enrichment, mobility, and bioavailability. A brief discussion addresses the implications of these findings in relation to tailings disposal technology and proposed uranium recovery processes

Nitrogen Cascade: An Opportunity to Integrate Biogeochemistry and Policy

Science.gov (United States)

Galloway, J. N.; Moomaw, W. R.; Theis, T. L.

2008-12-01

It began with micro-organisms millions of years ago, was enhanced by the burning of fossil carbon in the last several hundred years, and was magnified by a patent filed one hundred years ago. Today, the combined actions of cultivation-induced biological nitrogen fixation, fossil fuel combustion and the Haber-Bosch process have exceeded natural terrestrial processes in converting N22 to nitrogen compounds that are biologically, chemically or physically reactive (reactive nitrogen, Nr). While the benefits of Nr are well understood, many of the adverse consequences of excessive Nr are invisible from a policy perspective. Over the past century, the fundamental knowledge on nitrogen processes has advanced to the point where we have a good understanding of nitrogen's biogeochemical cycle, the role of humans in altering the cycle, and the consequences of the alterations. This knowledge has collectively led us to two conclusions-the consequences of intensive human influence on the nitrogen cycle leads to a cascade of ecosystem and human effects which need to be managed. Secondly, the management is complicated by the facts that it not only has to be integrated, but it also has to take into account that the management should not lower the ability of managed ecosystems to produce food for the world's peoples. The framework of the nitrogen cascade provides us with a structure for better identifying intervention points, and more effective policies, technologies and measures to prevent or mitigate the adverse impacts of reactive nitrogen, while enhancing its beneficial uses. We can now begin to use our understanding of science to set priorities and craft new policy strategies. For many regions of the world, the science is strong enough to manage nitrogen and there are existing tools to do so. However, the tools are not integrated, critical tools are missing and most importantly, there are nitrogen-rich regions of the world where the science is lacking, and nitrogen-poor regions where there is inadequate supply of nitrogen. After a brief review of the nitrogen cycle and the associated nitrogen cascade, this paper will identify control points in the cycle where management would be optimum, review the possible tools that are available for management, and suggest a process by which an integrated management approach might be developed.

The ecologic biogeochemistry of mercury in the Republic Buryatia

Science.gov (United States)

Kovalevskii, A. L.

Our mercury-biogeochemical researches of 1966-2001 have established, that natural sources of natural geological contamination of plants Hg are ore-bearing and mineralized geological structures and zones of tectonic faults - especially of deep mantle faults. The reason is the rather high intensity of an absorption by plants of the gaseous forms Hg. The example of biogeochemical provinces with high concentration Hg (and Cd) in plants with close to background or insignificantly increased contents Hg in soils and soils-forming rocks is Ozernoye, binded with the same name of ore knot in Eravna district of Buryatia. It has remained uncountered, since in livers and kidneys of sheep near lakes Gunda and Issinga in Eravna hollow high contents exceeding the Limit of Permissible Concentration (LPC) of Hg and Cd were revealed. These unexpected data testify probable prolongation of Ozernoye ore knot on east. Two others, not contoured mercury-biogeochemical provinces are connected with silver-bearing Gil'bera zone of deep faults in Ivolga district and to Monostoi anomalous biogeochemical field in Selenga district of Buryatia. On this anomalous field Hg was not determined, but its areal anomalies are rather probable, since Cd, Zn, Pb mineralization by our data is always accompanied by anomalies of Hg in plants. It is rather interesting that Ozernoye, Gil'bera and Monostoi mercury-biogeochemical provinces are characterized by high concentrations of Cd in plants, i.e. they complex cadmium-mercury. The extensive territory with the increased contents Hg in ashes of plants was revealed by P.I. Radchenko in the average current of river Chikoi in the eastern part of Kyakhta and in the southern part of Bichura region of Buryatia. This anomal field of Hg in plants can be called the Chikoi mercury-biogeochemical province. One more such province we predict on the territory of the Kholodnoe polymetal deposit in Severobaikal'sk region of Buryatia. Mentioned 5 mercury-biogeochemical provinces are only less investigated examples of such provinces in the Baikal region as here other ones are known. According to data of the special investigations of the ecology-geochemical detachment of the northern cup of Baikal and its frame on the western coast in sector Severobaikal'sk-Nizhneangarsk there is significant contamination by Hg. Is contents reach 126 LPC in coastal waters of Baikal, 120 LPC in waters of drinking bore holes on western coast of Baikal and 8 LPC in water-supply of town Severobaikal'sk. This anomaly can be colled the Severobaikal'sk hydromercury-biogeochemical province.

Couplings between changes in the climate system and biogeochemistry

Energy Technology Data Exchange (ETDEWEB)

Menon, Surabi; Denman, Kenneth L.; Brasseur , Guy; Chidthaisong, Amnat; Ciais, Philippe; Cox, Peter M.; Dickinson, Robert E.; Hauglustaine, Didier; Heinze, Christoph; Holland, Elisabeth; Jacob , Daniel; Lohmann, Ulrike; Ramachandran, Srikanthan; Leite da Silva Dias, Pedro; Wofsy, Steven C.; Zhang, Xiaoye

2007-10-01

The Earth's climate is determined by a number of complex connected physical, chemical and biological processes occurring in the atmosphere, land and ocean. The radiative properties of the atmosphere, a major controlling factor of the Earth's climate, are strongly affected by the biophysical state of the Earth's surface and by the atmospheric abundance of a variety of trace constituents. These constituents include long-lived greenhouse gases (LLGHGs) such as carbon dioxide (CO{sub 2}), methane (CH{sub 4}) and nitrous oxide (N{sub 2}O), as well as other radiatively active constituents such as ozone and different types of aerosol particles. The composition of the atmosphere is determined by processes such as natural and anthropogenic emissions of gases and aerosols, transport at a variety of scales, chemical and microphysical transformations, wet scavenging and surface uptake by the land and terrestrial ecosystems, and by the ocean and its ecosystems. These processes and, more generally the rates of biogeochemical cycling, are affected by climate change, and involve interactions between and within the different components of the Earth system. These interactions are generally nonlinear and may produce negative or positive feedbacks to the climate system. An important aspect of climate research is to identify potential feedbacks and assess if such feedbacks could produce large and undesired responses to perturbations resulting from human activities. Studies of past climate evolution on different time scales can elucidate mechanisms that could trigger nonlinear responses to external forcing. The purpose of this chapter is to identify the major biogeochemical feedbacks of significance to the climate system, and to assess current knowledge of their magnitudes and trends. Specifically, this chapter will examine the relationships between the physical climate system and the land surface, the carbon cycle, chemically reactive atmospheric gases and aerosol particles. It also presents the current state of knowledge on budgets of important trace gases. Large uncertainties remain in many issues discussed in this chapter, so that quantitative estimates of the importance of the coupling mechanisms discussed in the following sections are not always available. In addition, regional differences in the role of some cycles and the complex interactions between them limit our present ability to provide a simple quantitative description of the interactions between biogeochemical processes and climate change.

Atmospheric Aerosol Emissions Related to the Mediterranean Seawater Biogeochemistry

Science.gov (United States)

Sellegri, K.; Schwier, A.; Rose, C.; Gazeau, F. P. H.; Guieu, C.; D'anna, B.; Ebling, A. M.; Pey, J.; Marchand, N.; Charriere, B.; Sempéré, R.; Mas, S.

2016-02-01

Marine aerosols contribute significantly to the global aerosol load and consequently has an important impact on the Earth's climate. Different factors influence the way they are produced at the air/seawater interface. The sea state (whitecap coverage, temperature, etc. ) influence the size and concentration of primarily produced particles but also biogeochemical characteristics of the seawater influence both the physical and chemical primary fluxes to the atmosphere. An additional aerosol source of marine aerosol to the atmosphere is the formation of new particles by gaz-to-particle conversion, i.e. nucleation. How the seawater and surface microlayer biogeochemical compositions influences the aerosol emissions is still a large debate. In order to study marine emissions, one approach is to use semi-controlled environments such as mesocosms. Within the MedSea and SAM projects, we characterize the primary Sea Spray Aerosol (SSA) during mesocosms experiments performed during different seasons in the Mediteranean Sea. Mesocosms were either left unchanged as control or enriched by addition of nutriments in order to create different levels of phytoplanctonic activities. The mesocosms waters were daily analyzed for their chemical and biological composition (DOC, CDOM, TEP, Chl-a, virus, bacteria, phytoplankton and zooplankton concentrations). SSA production by bubble bursting was daily simulated in a dedicated set-up. The size segregated SSA number fluxes, cloud condensation nuclei (CCN) properties, and chemical composition were determined as a function of the seawater characteristics. We show that the SSA organic content was clearly correlated to the seawater Chl-a level, provided that the mesocosm was not enriched to create an artificial phytoplanctonic bloom. In our experiments, the enrichment of the seawater with natural surface microlayer did not impact the SSA organic content nor its CCN properties. At last, nucleation of secondary particles were observed to occur in the mesocosm headspace, without any connection to DMS emissions. The occurrence of nucleation of new particles in the open ocean atmosphere is still debated and these findings will be discussed in regard to observations performed in the ambient Mediterranean atmosphere during the MISTRAL/Charmex project.

Biogeochemistry of cadmium and its release to the environment.

Science.gov (United States)

Cullen, Jay T; Maldonado, Maria T

2013-01-01

Cadmium is at the end of the 4d-transition series, it is relatively mobile and acutely toxic to almost all forms of life. In this review we present a summary of information describing cadmium's physical and chemical properties, its distribution in crustal materials, and the processes, both natural and anthropogenic, that contribute to the metal's mobilization in the biosphere. The relatively high volatility of Cd metal, its large ionic radius, and its chemical speciation in aquatic systems makes Cd particularly susceptible to mobilization by anthropogenic and natural processes. The biogeochemical cycle of Cd is observed to be significantly altered by anthropogenic inputs, especially since the beginning of the industrial revolution drove increases in fossil fuel burning and non-ferrous metal extraction. Estimates of the flux of Cd to the atmosphere, its deposition and processing in soils and freshwater systems are presented. Finally, the basin scale distribution of dissolved Cd in the ocean, the ultimate receptacle of Cd, is interpreted in light of the chemical speciation and biogeochemical cycling of Cd in seawater. Paradoxically, Cd behaves as a nutrient in the ocean and its cycling and fate is intimately tied to uptake by photosynthetic microbes, their death, sinking and remineralization in the ocean interior. Proximate controls on the incorporation of Cd into biomass are discussed to explain the regional specificity of the relationship between dissolved Cd and the algal nutrient phosphate (PO[Formula: see text]) in oceanic surface waters and nutriclines. Understanding variability in the Cd/PO[Formula: see text] is of primary interest to paleoceanographers developing a proxy to probe the links between nutrient utilization in oceanic surface waters and atmospheric CO(2) levels. An ongoing international survey of trace elements and their isotopes in seawater will undoubtedly increase our understanding of the deposition, biogeochemical cycling and fate of this enigmatic, sometimes toxic, sometimes beneficial heavy metal.

Integrating biogeochemistry and ecology into ocean data assimilation systems

DEFF Research Database (Denmark)

Brasseur, Pierre; Gruber, Nicolas; Barciela, Rosa

2009-01-01

that are not yet considered essential, such as upper-ocean vertical fluxes that are critically important to biological activity. Further, the observing systems will need to be expanded in terms of in situ platforms (with intensified deployments of sensors for O-2 and chlorophyll, and inclusion of new sensors...... for nutrients, zooplankton, micronekton biomass, and others), satellite missions (e.g., hyperspectral instruments for ocean color, lidar systems for mixed-layer depths, and wide-swath altimeters for coastal sea level), and improved methods to assimilate these new measurements....

Biogeochemistry of selenium isotopes: processes, cycling and paleoenvironmental applications

NARCIS (Netherlands)

Mitchell, K.A.

2012-01-01

Selenium (Se) is an essential trace element, which, with multiple oxidation states and six stable isotopes, has been suggested as a potentially powerful environmental tracer and paleoenvironmental proxy. Chapter 1 provides a literature review of the Se cycle. While the Se cycle shares some

Arsenic and fluvial biofilms: biogeochemistry, toxicity and biotic interactions

OpenAIRE

Barral Fraga, Laura

2017-01-01

Basándonos en los conocimientos actuales sobre la ecotoxicología del biofilm y la biogeoquímica del arsénico en ecosistemas dulceacuícolas, esta tesis estudió, bajo concentraciones ambientales realistas, i) el papel de los biofilms bentónicos en la biodisponibilidad y destoxificación del arsénico, ii) los efectos tóxicos del arsénico sobre la estructura y función de los biofilms bentónicos fluviales, prestando especial atención a las respuestas de las diatomeas, y iii) la interacción entre es...

Hydrothermal impacts on trace element and isotope ocean biogeochemistry.

Science.gov (United States)

German, C R; Casciotti, K A; Dutay, J-C; Heimbürger, L E; Jenkins, W J; Measures, C I; Mills, R A; Obata, H; Schlitzer, R; Tagliabue, A; Turner, D R; Whitby, H

2016-11-28

Hydrothermal activity occurs in all ocean basins, releasing high concentrations of key trace elements and isotopes (TEIs) into the oceans. Importantly, the calculated rate of entrainment of the entire ocean volume through turbulently mixing buoyant hydrothermal plumes is so vigorous as to be comparable to that of deep-ocean thermohaline circulation. Consequently, biogeochemical processes active within deep-ocean hydrothermal plumes have long been known to have the potential to impact global-scale biogeochemical cycles. More recently, new results from GEOTRACES have revealed that plumes rich in dissolved Fe, an important micronutrient that is limiting to productivity in some areas, are widespread above mid-ocean ridges and extend out into the deep-ocean interior. While Fe is only one element among the full suite of TEIs of interest to GEOTRACES, these preliminary results are important because they illustrate how inputs from seafloor venting might impact the global biogeochemical budgets of many other TEIs. To determine the global impact of seafloor venting, however, requires two key questions to be addressed: (i) What processes are active close to vent sites that regulate the initial high-temperature hydrothermal fluxes for the full suite of TEIs that are dispersed through non-buoyant hydrothermal plumes? (ii) How do those processes vary, globally, in response to changing geologic settings at the seafloor and/or the geochemistry of the overlying ocean water? In this paper, we review key findings from recent work in this realm, highlight a series of key hypotheses arising from that research and propose a series of new GEOTRACES modelling, section and process studies that could be implemented, nationally and internationally, to address these issues.This article is part of the themed issue 'Biological and climatic impacts of ocean trace element chemistry'. © 2015 The Authors.

Book review Biogeochemistry of Marine Systems By Pierre William ...

African Journals Online (AJOL)

Blackwell Publishing, 9600 Garsington Road, Oxford, OX4 2DQ, UK. CRC Press, Boca Raton, USA Hardback and paperback available, 334 pages, 269 illustrations. Hardback ISBN 1814 27 3279; price £99.50. Paperback ISBN 063 2055 567; price US$64.95. African Journal of Aquatic Science 2005, 30(1): 91 ...

A data assimilating model for estimating Southern Ocean biogeochemistry

Science.gov (United States)

Verdy, A.; Mazloff, M. R.

2017-09-01

A Biogeochemical Southern Ocean State Estimate (B-SOSE) is introduced that includes carbon and oxygen fields as well as nutrient cycles. The state estimate is constrained with observations while maintaining closed budgets and obeying dynamical and thermodynamic balances. Observations from profiling floats, shipboard data, underway measurements, and satellites are used for assimilation. The years 2008-2012 are chosen due to the relative abundance of oxygen observations from Argo floats during this time. The skill of the state estimate at fitting the data is assessed. The agreement is best for fields that are constrained with the most observations, such as surface pCO2 in Drake Passage (44% of the variance captured) and oxygen profiles (over 60% of the variance captured at 200 and 1000 m). The validity of adjoint method optimization for coupled physical-biogeochemical state estimation is demonstrated with a series of gradient check experiments. The method is shown to be mature and ready to synthesize in situ biogeochemical observations as they become more available. Documenting the B-SOSE configuration and diagnosing the strengths and weaknesses of the solution informs usage of this product as both a climate baseline and as a way to test hypotheses. Transport of Intermediate Waters across 32°S supplies significant amounts of nitrate to the Atlantic Ocean (5.57 ± 2.94 Tmol yr-1) and Indian Ocean (5.09 ± 3.06 Tmol yr-1), but much less nitrate reaches the Pacific Ocean (1.78 ± 1.91 Tmol yr-1). Estimates of air-sea carbon dioxide fluxes south of 50°S suggest a mean uptake of 0.18 Pg C/yr for the time period analyzed.

Watershed responses to Amazon soya bean cropland expansion and intensification.

Science.gov (United States)

Neill, Christopher; Coe, Michael T; Riskin, Shelby H; Krusche, Alex V; Elsenbeer, Helmut; Macedo, Marcia N; McHorney, Richard; Lefebvre, Paul; Davidson, Eric A; Scheffler, Raphael; Figueira, Adelaine Michela e Silva; Porder, Stephen; Deegan, Linda A

2013-06-05

The expansion and intensification of soya bean agriculture in southeastern Amazonia can alter watershed hydrology and biogeochemistry by changing the land cover, water balance and nutrient inputs. Several new insights on the responses of watershed hydrology and biogeochemistry to deforestation in Mato Grosso have emerged from recent intensive field campaigns in this region. Because of reduced evapotranspiration, total water export increases threefold to fourfold in soya bean watersheds compared with forest. However, the deep and highly permeable soils on the broad plateaus on which much of the soya bean cultivation has expanded buffer small soya bean watersheds against increased stormflows. Concentrations of nitrate and phosphate do not differ between forest or soya bean watersheds because fixation of phosphorus fertilizer by iron and aluminium oxides and anion exchange of nitrate in deep soils restrict nutrient movement. Despite resistance to biogeochemical change, streams in soya bean watersheds have higher temperatures caused by impoundments and reduction of bordering riparian forest. In larger rivers, increased water flow, current velocities and sediment flux following deforestation can reshape stream morphology, suggesting that cumulative impacts of deforestation in small watersheds will occur at larger scales.

Potential environmental impact of tidal energy extraction in the Pentland Firth at large spatial scales: results of a biogeochemical model

Science.gov (United States)

van der Molen, Johan; Ruardij, Piet; Greenwood, Naomi

2016-05-01

A model study was carried out of the potential large-scale (> 100 km) effects of marine renewable tidal energy generation in the Pentland Firth, using the 3-D hydrodynamics-biogeochemistry model GETM-ERSEM-BFM. A realistic 800 MW scenario and a high-impact scenario with massive expansion of tidal energy extraction to 8 GW scenario were considered. The realistic 800 MW scenario suggested minor effects on the tides, and undetectable effects on the biogeochemistry. The massive-expansion 8 GW scenario suggested effects would be observed over hundreds of kilometres away with changes of up to 10 % in tidal and ecosystem variables, in particular in a broad area in the vicinity of the Wash. There, waters became less turbid, and primary production increased with associated increases in faunal ecosystem variables. Moreover, a one-off increase in carbon storage in the sea bed was detected. Although these first results suggest positive environmental effects, further investigation is recommended of (i) the residual circulation in the vicinity of the Pentland Firth and effects on larval dispersal using a higher-resolution model and (ii) ecosystem effects with (future) state-of-the-art models if energy extraction substantially beyond 1 GW is planned.

Sensitivity of a coupled climate-carbon cycle model to large volcanic eruptions during the last millennium

Energy Technology Data Exchange (ETDEWEB)

Brovkin, Victor; Lorenz, Stephan J.; Jungclaus, Johann; Raddatz, Thomas; Timmreck, Claudia; Reick, Christian H.; Segschneider, Joachim; Six, Katharina (Max Planck Inst. for Meteorology Hamburg (Germany))

2010-11-15

The sensitivity of the climate-biogeochemistry system to volcanic eruptions is investigated using the comprehensive Earth System Model developed at the Max Planck Institute for Meteorology. The model includes an interactive carbon cycle with modules for terrestrial biosphere as well as ocean biogeochemistry. The volcanic forcing is based on a recent reconstruction for the last 1200 yr. An ensemble of five simulations is performed and the averaged response of the system is analysed in particular for the largest eruption of the last millennium in the year 1258. After this eruption, the global annual mean temperature drops by 1 K and recovers slowly during 10 yr. Atmospheric CO{sub 2} concentration declines during 4 yr after the eruption by ca. 2 ppmv to its minimum value and then starts to increase towards the pre-eruption level. This CO{sub 2} decrease is explained mainly by reduced heterotrophic respiration on land in response to the surface cooling, which leads to increased carbon storage in soils, mostly in tropical and subtropical regions. The ocean acts as a weak carbon sink, which is primarily due to temperature-induced solubility. This sink saturates 2 yr after the eruption, earlier than the land uptake.

Sensitivity of a coupled climate-carbon cycle model to large volcanic eruptions during the last millennium

International Nuclear Information System (INIS)

Brovkin, Victor; Lorenz, Stephan J.; Jungclaus, Johann; Raddatz, Thomas; Timmreck, Claudia; Reick, Christian H.; Segschneider, Joachim; Six, Katharina

2010-01-01

The sensitivity of the climate-biogeochemistry system to volcanic eruptions is investigated using the comprehensive Earth System Model developed at the Max Planck Institute for Meteorology. The model includes an interactive carbon cycle with modules for terrestrial biosphere as well as ocean biogeochemistry. The volcanic forcing is based on a recent reconstruction for the last 1200 yr. An ensemble of five simulations is performed and the averaged response of the system is analysed in particular for the largest eruption of the last millennium in the year 1258. After this eruption, the global annual mean temperature drops by 1 K and recovers slowly during 10 yr. Atmospheric CO 2 concentration declines during 4 yr after the eruption by ca. 2 ppmv to its minimum value and then starts to increase towards the pre-eruption level. This CO 2 decrease is explained mainly by reduced heterotrophic respiration on land in response to the surface cooling, which leads to increased carbon storage in soils, mostly in tropical and subtropical regions. The ocean acts as a weak carbon sink, which is primarily due to temperature-induced solubility. This sink saturates 2 yr after the eruption, earlier than the land uptake.

Regional impacts of iron-light colimitation in a global biogeochemical model

Science.gov (United States)

Galbraith, E. D.; Gnanadesikan, A.; Dunne, J. P.; Hiscock, M. R.

2010-03-01

Laboratory and field studies have revealed that iron has multiple roles in phytoplankton physiology, with particular importance for light-harvesting cellular machinery. However, although iron-limitation is explicitly included in numerous biogeochemical/ecosystem models, its implementation varies, and its effect on the efficiency of light harvesting is often ignored. Given the complexity of the ocean environment, it is difficult to predict the consequences of applying different iron limitation schemes. Here we explore the interaction of iron and nutrient cycles in an ocean general circulation model using a new, streamlined model of ocean biogeochemistry. Building on previously published parameterizations of photoadaptation and export production, the Biogeochemistry with Light Iron Nutrients and Gasses (BLING) model is constructed with only four explicit tracers but including macronutrient and micronutrient limitation, light limitation, and an implicit treatment of community structure. The structural simplicity of this computationally-inexpensive model allows us to clearly isolate the global effect that iron availability has on maximum light-saturated photosynthesis rates vs. the effect iron has on photosynthetic efficiency. We find that the effect on light-saturated photosynthesis rates is dominant, negating the importance of photosynthetic efficiency in most regions, especially the cold waters of the Southern Ocean. The primary exceptions to this occur in iron-rich regions of the Northern Hemisphere, where high light-saturated photosynthesis rates allow photosynthetic efficiency to play a more important role. In other words, the ability to efficiently harvest photons has little effect in regions where light-saturated growth rates are low. Additionally, we speculate that the phytoplankton cells dominating iron-limited regions tend to have relatively high photosynthetic efficiency, due to reduced packaging effects. If this speculation is correct, it would imply that

Regional impacts of iron-light colimitation in a global biogeochemical model

Directory of Open Access Journals (Sweden)

E. D. Galbraith

2010-03-01

Full Text Available Laboratory and field studies have revealed that iron has multiple roles in phytoplankton physiology, with particular importance for light-harvesting cellular machinery. However, although iron-limitation is explicitly included in numerous biogeochemical/ecosystem models, its implementation varies, and its effect on the efficiency of light harvesting is often ignored. Given the complexity of the ocean environment, it is difficult to predict the consequences of applying different iron limitation schemes. Here we explore the interaction of iron and nutrient cycles in an ocean general circulation model using a new, streamlined model of ocean biogeochemistry. Building on previously published parameterizations of photoadaptation and export production, the Biogeochemistry with Light Iron Nutrients and Gasses (BLING model is constructed with only four explicit tracers but including macronutrient and micronutrient limitation, light limitation, and an implicit treatment of community structure. The structural simplicity of this computationally-inexpensive model allows us to clearly isolate the global effect that iron availability has on maximum light-saturated photosynthesis rates vs. the effect iron has on photosynthetic efficiency. We find that the effect on light-saturated photosynthesis rates is dominant, negating the importance of photosynthetic efficiency in most regions, especially the cold waters of the Southern Ocean. The primary exceptions to this occur in iron-rich regions of the Northern Hemisphere, where high light-saturated photosynthesis rates allow photosynthetic efficiency to play a more important role. In other words, the ability to efficiently harvest photons has little effect in regions where light-saturated growth rates are low. Additionally, we speculate that the phytoplankton cells dominating iron-limited regions tend to have relatively high photosynthetic efficiency, due to reduced packaging effects. If this speculation is correct

American Chemical Society, 75 years of progress, Division of Environmental Chemistry, preprints of papers

International Nuclear Information System (INIS)

Anon.

1988-01-01

The 196th ACS meeting was held in the Los Angeles September 25-30, 1988. The Division of Environmental Chemistry presented symposia on the following topics: data analysis procedures for trace constituents and toxic compounds, photochemical oxidants and their precursors, ionizing radiation in drinking water, environmental chemistry of dyes, biogeochemistry of CO 2 and the greenhouse effect, and biological markers of environmental contaminants. Abstracts are included for 151 papers

Photosynthetic Versatility in the Genome of Geitlerinema sp. PCC 9228 (Formerly Oscillatoria limnetica ?Solar Lake?), a Model Anoxygenic Photosynthetic Cyanobacterium

OpenAIRE

Grim, Sharon L.; Dick, Gregory J.

2016-01-01

Anoxygenic cyanobacteria that use sulfide as the electron donor for photosynthesis are a potentially influential but poorly constrained force on Earth’s biogeochemistry. Their versatile metabolism may have boosted primary production and nitrogen cycling in euxinic coastal margins in the Proterozoic. In addition, they represent a biological mechanism for limiting the accumulation of atmospheric oxygen, especially before the Great Oxidation Event and in the low-oxygen conditions of the Proteroz...

Reducing eutrophication increases spatial extent of communities supporting commercial fisheries

DEFF Research Database (Denmark)

Bauer, Barbara; Meier, H.E. Markus; Casini, Michele

2018-01-01

distribution of functional groups within a marine ecosystem, which depends on their respective tolerances to abiotic factors, trophic interactions, and fishing. We simulate the future long-term spatial developments of the community composition and their potential implications for fisheries under three...... from climate research, physical oceanography, biogeochemistry, biogeography, and trophic ecology with economical information provides a strong foundation to produce scientific knowledge that can support a multisectoral management of ecosystems....

Responses of fungal root colonization, plant cover and leaf nutrients to long-term exposure to elevated atmospheric CO₂ and warming in a subarctic birch forest understory

DEFF Research Database (Denmark)

Olsrud, Maria; Carlsson, Bengt Å.; Svensson, Brita M.

2010-01-01

Responses of the mycorrhizal fungal community in terrestrial ecosystems to global change factors are not well understood. However, virtually all land plants form symbiotic associations with mycorrhizal fungi, with approximately 20% of the plants' net primary production transported down...... by mycorrhizal and other root-associated fungi to global change factors of all the fungal types studied could have broad implications for plant community structure and biogeochemistry of subarctic ecosystems....

French days on stable isotopes

International Nuclear Information System (INIS)

2000-01-01

These first French days on stable isotopes took place in parallel with the 1. French days of environmental chemistry. Both conferences had common plenary sessions. The conference covers all aspects of the use of stable isotopes in the following domains: medicine, biology, environment, tracer techniques, agronomy, food industry, geology, petroleum geochemistry, cosmo-geochemistry, archaeology, bio-geochemistry, hydrology, climatology, nuclear and particle physics, astrophysics, isotope separations etc.. Abstracts available on CD-Rom only. (J.S.)

The effect of increased loads of dissolved organic matter on estuarine microbial community composition and function

DEFF Research Database (Denmark)

Traving, Sachia J.; Rowe, Owen; Jakobsen, Nina M.

2017-01-01

Increased river loads are projected as one of the major consequences of climate change in the northern hemisphere, leading to elevated inputs of riverine dissolved organic matter (DOM) and inorganic nutrients to coastal ecosystems. The objective of this study was to investigate the effects of ele...... supply to the Baltic Sea will be efficiently mineralized by microbes. This will have consequences for bacterioplankton and phytoplankton community composition and function, and significantly affect nutrient biogeochemistry....

A Cryptic Sulfur Cycle in Oxygen-Minimum-Zone Waters off the Chilean Coast

OpenAIRE

Canfield, D. E.; Thamdrup, B.; De Brabandere, L.; Dalsgaard, T.; Revsbech, N. P.; Ulloa, O.; Stewart, Frank J.; DeLong, Edward Francis

2010-01-01

Nitrogen cycling is normally thought to dominate the biogeochemistry and microbial ecology of oxygen-minimum zones in marine environments. Through a combination of molecular techniques and process rate measurements, we showed that both sulfate reduction and sulfide oxidation contribute to energy flux and elemental cycling in oxygen-free waters off the coast of northern Chile. These processes may have been overlooked because in nature, the sulfide produced by sulfate reduction immediately oxid...

Stable carbon isotope biogeochemistry of lakes along a trophic gradient

NARCIS (Netherlands)

de Kluijver, A.; Schoon, P.L.; Downing, J.A.; Schouten, S.; Middelburg, J.J.

2014-01-01

The stable carbon (C) isotope variability of dissolved inorganic and organic C (DIC and DOC), particulate organic carbon (POC), glucose and polar-lipid derived fatty acids (PLFAs) was studied in a survey of 22 North American oligotrophic to eutrophic lakes. The d13C of different PLFAs were used as

Recent advances in the biogeochemistry of nitrogen in the ocean

Digital Repository Service at National Institute of Oceanography (India)

Naqvi, S.W.A.; Voss, M.; Montoya, J.P.

, K. O., Orr, W. L., and Rittenberg, S. C.: Nutrient budgets in the ocean, in: Essays in Natural Sciences in Honor of Captain Allan Hancock, University of Southern California Press, Los An- geles, pp. 299-309, 1955. Falcon, L. I., Carpenter, E. J...

Relating BTEX degradation to the biogeochemistry of an anaerobic aquifer

International Nuclear Information System (INIS)

Toze, S.G.; Power, T.R.; Davis, G.B.

1995-01-01

Trends in chemical and microbiological parameters in a petroleum hydrocarbon plume within anaerobic groundwater have been studied. Previously, microbial degradation of the hydrocarbon compounds had been substantiated by the use of deuterated hydrocarbons to determine natural (intrinsic) degradation rates within the contaminant plume. Here, sulfate concentration decreases, Eh decreases, and hydrogen sulfide and bicarbonate concentration increases are shown to be associated with the contaminant plume. These trends indicate microbial degradation of the benzene, toluene, ethylbenzene, and xylene (BTEX) compounds by sulfate-reducing bacteria. Stoichiometry indicates that other consortia of bacteria play a role in the degradation of the hydrocarbons. Total microbial cell numbers were higher within the plume than in the uncontaminated groundwater. There is, however, no direct correlation between total microbial cell numbers, and BTEX, sulfate, bicarbonate, and hydrogen sulfide concentrations within the plume

Biogeochemistry of an iron-rich hypersaline microbial mat (Camargue, France).

Science.gov (United States)

Wieland, A; Zopfi, J; Benthien, M; Kühl, M

2005-01-01

In situ microsensor measurements were combined with biogeochemical methods to determine oxygen, sulfur, and carbon cycling in microbial mats growing in a solar saltern (Salin-de-Giraud, France). Sulfate reduction rates closely followed the daily temperature changes and were highest during the day at 25 degrees C and lowest during the night at 11 degrees C, most probably fueled by direct substrate interactions between cyanobacteria and sulfate-reducing bacteria. Sulfate reduction was the major mineralization process during the night and the contribution of aerobic respiration to nighttime DIC production decreased. This decrease of aerobic respiration led to an increasing contribution of sulfide (and iron) oxidation to nighttime O2 consumption. A peak of elemental sulfur in a layer of high sulfate reduction at low sulfide concentration underneath the oxic zone indicated anoxygenic photosynthesis and/or sulfide oxidation by iron, which strongly contributed to sulfide consumption. We found a significant internal carbon cycling in the mat, and sulfate reduction directly supplied DIC for photosynthesis. The mats were characterized by a high iron content of 56 micromol Fe cm(-3), and iron cycling strongly controlled the sulfur cycle in the mat. This included sulfide precipitation resulting in high FeS contents with depth, and reactions of iron oxides with sulfide, especially after sunset, leading to a pronounced gap between oxygen and sulfide gradients and an unusual persistence of a pH peak in the uppermost mat layer until midnight.

Tropical forest soil microbial communities couple iron and carbon biogeochemistry

Energy Technology Data Exchange (ETDEWEB)

Dubinsky, E.A.; Silver, W.L.; Firestone, M.K.

2009-10-15

We report that iron-reducing bacteria are primary mediators of anaerobic carbon oxidation in upland tropical soils spanning a rainfall gradient (3500 - 5000 mm yr-1) in northeast Puerto Rico. The abundant rainfall and high net primary productivity of these tropical forests provide optimal soil habitat for iron-reducing and iron-oxidizing bacteria. Spatially and temporally dynamic redox conditions make iron-transforming microbial communities central to the belowground carbon cycle in these wet tropical forests. The exceedingly high abundance of iron-reducing bacteria (up to 1.2 x 10{sup 9} cells per gram soil) indicated that they possess extensive metabolic capacity to catalyze the reduction of iron minerals. In soils from the higher rainfall sites, measured rates of ferric iron reduction could account for up to 44 % of organic carbon oxidation. Iron reducers appeared to compete with methanogens when labile carbon availability was limited. We found large numbers of bacteria that oxidize reduced iron at sites with high rates of iron reduction and large numbers of iron-reducers. the coexistence of large populations of ironreducing and iron-oxidizing bacteria is evidence for rapid iron cycling between its reduced and oxidized states, and suggests that mutualistic interactions among these bacteria ultimately fuel organic carbon oxidation and inhibit CH4 production in these upland tropical forests.

Biogeochemistry of pyrite and iron sulfide oxidation in marine sediments

DEFF Research Database (Denmark)

Schippers, A.; Jørgensen, BB

2002-01-01

as substrates and NO3- as electron acceptor, in the presence of (FeS2)-Fe-55, to test for co-oxidation of FeS2, but an anaerobic microbial dissolution of (FeS2)-Fe-55, could not been detected. FeS2 and FeS were not oxidized by amorphous Fe(III) oxide in the presence of Fe-complexing organic compounds......Pyrite (FeS2) and iron monosulfide (FeS) play a central role in the sulfur and iron cycles of marine sediments, They may be buried in the sediment or oxidized by O-2 after transport by bioturbation to the sediment surface. FeS2 and FeS may also be oxidized within the anoxic sediment in which NO3...... marine sediments and incubated at different temperatures for > 1 yr. Bacteria could not be enriched with FeS2 as substrate or with FeS and amorphous Fe(III) oxide. With FeS and NO3-, 14 enrichments were obtained. One of these enrichments was further cultivated anaerobically with Fe2+ and S-0...

Soil biogeochemistry, plant physiology and phytoremediation of cadmium contaminated soils

Science.gov (United States)

Cadmium (Cd) loading in soil and the environment has been accelerated worldwide due to enhanced industrialization and intensified agricultural production, particularly in the developing countries. Soil Cd pollution, resulting from both anthropogenic and geogenic sources, has posed an increasing chal...

Sulfur and carbon isotope biogeochemistry of a rewetted brackish fen

Science.gov (United States)

Koebsch, Franziska; Gehre, Matthias; Winkel, Matthias; Koehler, Stefan; Koch, Marian; Jurasinski, Gerald; Spitzy, Alejandro; Liebner, Susanne; Sachs, Torsten; Schmiedinger, Iris; Kretzschmann, Lisett; Saborowski, Anke; Böttcher, Michael E.

2015-04-01

Coastal wetlands are at the interface between terrestrial freshwater and marine and exhibit very specific biogeochemical conditions. Intermittent sea water intrusion affects metabolic pathways, i. e. anaerobic carbon metabolism is progressively dominated by sulfate reduction with lower contribution of methanogenesis whilst methane production is increasingly shifted from acetoclastic to hydrogenotrophic. Due to expanding anthropogenic impact a large proportion of coastal ecosystems is degraded with severe implications for the biogeochemical processes. We use concentration patterns and stable isotope signatures of water, sulfate, dissolved carbonate, and methane (δ2H, δ13C, δ18O, δ34S) to investigate the S and C metabolic cycle in a rewetted fen close to the southern Baltic Sea border. Such studies are crucial to better predict dynamic ecosystem feedback to global change like organic matter (OM) decomposition or greenhouse gas emissions. Yet, little is known about the metabolic pathways in such environments. The study site is part of the TERENO Observatory "Northeastern German Lowlands' and measurements of methane emissions have run since 2009. High methane fluxes up to 800 mg m-2 hr-1 indicate that methanogenesis is the dominant C metabolism pathway despite of high sulfate concentrations (up to 37 mM). The presented data are part of a comprehensive biogeochemical investigation that we conducted in autumn 2014 and that comprises 4 pore water profiles and sediment samples within a transect of 300-1500 m distance to the Baltic Sea. Depth of organic layers ranged from 25 to 140 cm with high OM contents (up to 90 dwt.%). Sulfate/chloride ratios in the pore waters were lower than in the Baltic Sea for most sites and sediment depths indicated a substantial net sulfate loss. Sulfide concentrations were negligible at the top and increased parallel to the sulfate concentrations with depth to values of up to 0.3 mM. One pore water profiles situated 1150 m from the Baltic Sea coast line exhibited a significant excess of sulfate. Preliminary sulfur isotope analysis of pore water sulfate from a location nearest to this profile revealed an enrichment in 34S (24.9 to 41.8o ) in comparison to Baltic Sea sulfate (21o ). This confirms high degrees of net sulfate reduction. Considering the yet high sulfate concentrations we hypothesize that local processes might supply additional sulfate and that the sulfide produced from sulfate reduction might either be lost by upwards diffusion towards the atmosphere or converted into other S compounds such as pyrite or organic compounds. The isotopic signatures of methane (δ13C: -68 to -57o and δ2H: -133 to -157o respectively) indicated acetoclastic methanogenesis to be the most dominant methane production pathway. However, estimated fractionation factors are comparatively high (1.050-1.065). Enrichment of heavy 13C in methane at the top of the sediment was either caused by methane oxidation or variation in substrate availability (e. g. due to peat degradation). The interpretation of our data in the light of further results will provide deeper insights into metabolic pathways and possible interactions between both coupled element cycles for coastal ecosystems.

Ocean biogeochemistry and atmospheric composition: Significance of the Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Naqvi, S.W.A.; Jayakumar, D.A.

-deficiency at mid-depths in this region modulates oceanic combined nitrogen inventory and consequently biological productivity. Due to a delicate biogeochemical balance the Arabian Sea is expected to be among the first to react to potential anthropogenic...

The Biogeochemistry of Bioenergy Landscapes: Carbon, Nitrogen, and Water Considerations

Science.gov (United States)

The biogeochemical liabilities of grain-based crop production for bioenergy are no different from those of grain-based food production: excessive nitrate leakage, soil carbon and phosphorus loss, nitrous oxide production, and attenuated methane uptake. Contingent problems are well-known, increasingl...

Visualizing Microbial Biogeochemistry: NanoSIMS and Stable Isotope Probing (Invited)

Science.gov (United States)

Pett-Ridge, J.; Weber, P. K.

2009-12-01

Linking phylogenetic information to function in microbial communities is a key challenge for microbial ecology. Isotope-labeling experiments provide a useful means to investigate the ecophysiology of microbial populations and cells in the environment and allow measurement of nutrient transfers between cell types, symbionts and consortia. The combination of Nano-Secondary Ion Mass Spectrometry (NanoSIMS) analysis, in situ labeling and high resolution microscopy allows isotopic analysis to be linked to phylogeny and morphology and holds great promise for fine-scale studies of microbial systems. In NanoSIMS analysis, samples are sputtered with an energetic primary beam (Cs+, O-) liberating secondary ions that are separated by the mass spectrometer and detected in a suite of electron multipliers. Five isotopic species may be analyzed concurrently with spatial resolution as fine as 50nm. A high sensitivity isotope ratio ‘map’ can then be generated for the analyzed area. NanoSIMS images of 13C, 15N and Mo (a nitrogenase co-factor) localization in diazotrophic cyanobacteria show how cells differentially allocate resources within filaments and allow calculation of nutrient uptake rates on a cell by cell basis. Images of AM fungal hyphae-root and cyanobacteria-rhizobia associations indicate the mobilization and sharing (stealing?) of newly fixed C and N. In a related technique, “El-FISH”, stable isotope labeled biomass is probed with oligonucleotide-elemental labels and then imaged by NanoSIMS. In microbial consortia and cyanobacterial mats, this technique helps link microbial structure and function simultaneously even in systems with unknown and uncultivated microbes. Finally, the combination of re-engineered universal 16S oligonucleotide microarrays with NanoSIMS analyses may allow microbial identity to be linked to functional roles in complex systems such as mats and cellulose degrading hindgut communities. These newly developed methods provide correlated oligonucleotide, functional enzyme and metabolic image data and should help unravel the metabolic processes of complex microbial communities in soils, biofilms and aquatic systems.

The carbon stable isotope biogeochemistry of streams, Taylor Valley, Antarctica

International Nuclear Information System (INIS)

Lyons, W.B.; Leslie, D.L.; Harmon, R.S.; Neumann, K.; Welch, K.A.; Bisson, K.M.; McKnight, D.M.

2013-01-01

Highlights: ► δ 13 C-DIC reported from McMurdo Dry Valleys, Antarctica, streams. ► Stream water δ 13 C PDB values range −9.4‰ to +5.1‰, largely inorganic in character. ► Atmospheric exchange is the dominant control on δ 13 C-DIC. - Abstract: The McMurdo Dry Valleys region of Antarctica is the largest ice-free region on the continent. This study reports the first C stable isotope measurements for dissolved inorganic C present in ephemeral streams in four dry valleys that flow for four to twelve weeks during the austral summer. One of these valleys, Taylor Valley, has been the focus of the McMurdo Dry Valleys Long-Term Ecological Research (MCM-LTER) program since 1993. Within Taylor Valley, numerous ephemeral streams deliver water to three perennially ice-covered, closed-basin lakes: Lake Fryxell, Lake Hoare, and Lake Bonney. The Onyx River in the Wright Valley, the longest river in Antarctica, flows for 40 km from the Wright Lower Glacier and Lake Brownworth at the foot of the glacier to Lake Vanda. Streamflow in the McMurdo Dry Valley streams is produced primarily from glacial melt, as there is no overland flow. However, hyporheic zone exchange can be a major hydrogeochemical process in these streams. Depending on landscape position, these streams vary in gradient, channel substrate, biomass abundance, and hyporheic zone extent. This study sampled streams from Taylor, Wright, Garwood, and Miers Valleys and conducted diurnal sampling of two streams of different character in Taylor Valley. In addition, transect sampling was undertaken of the Onyx River in Wright Valley. The δ 13 C PDB values from these streams span a range of greater than 14‰, from −9.4‰ to +5.1‰, with the majority of samples falling between −3‰ and +2‰, suggesting that the C stable isotope composition of dissolved C in McMurdo Dry Valley streams is largely inorganic in character. Because there are no vascular plants on this landscape and no groundwater input to these streams, atmospheric exchange is the dominant control on δ 13 C-DIC

Observing climate change trends in ocean biogeochemistry: when and where.

Science.gov (United States)

Henson, Stephanie A; Beaulieu, Claudie; Lampitt, Richard

2016-04-01

Understanding the influence of anthropogenic forcing on the marine biosphere is a high priority. Climate change-driven trends need to be accurately assessed and detected in a timely manner. As part of the effort towards detection of long-term trends, a network of ocean observatories and time series stations provide high quality data for a number of key parameters, such as pH, oxygen concentration or primary production (PP). Here, we use an ensemble of global coupled climate models to assess the temporal and spatial scales over which observations of eight biogeochemically relevant variables must be made to robustly detect a long-term trend. We find that, as a global average, continuous time series are required for between 14 (pH) and 32 (PP) years to distinguish a climate change trend from natural variability. Regional differences are extensive, with low latitudes and the Arctic generally needing shorter time series (ocean surface. Our results present a quantitative framework for assessing the adequacy of current and future ocean observing networks for detection and monitoring of climate change-driven responses in the marine ecosystem. © 2016 The Authors. Global Change Biology Published by John Wiley & Sons Ltd.

Effects of Concrete Channels on Stream Biogeochemistry, Maryland Coastal Plain

Science.gov (United States)

Prestegaard, K. L.; Gilbert, L.; Phemister, K.

2005-05-01

In the 1950's and 60's, extensive networks of cement-lined channels were built in suburban watersheds near Washington, D.C. to convey storm water to downstream locations. These cement-lined stream channels limit interactions between surface and groundwater and they provide sources of alkalinity in Maryland Coastal Plain watersheds that normally have low alkalinity. This project was designed to 1) compare base flow water chemistry in headwater reaches of urban and non-urban streams, and 2) to evaluate downstream changes in water chemistry in channelized urban streams in comparison with non-urban reference streams. During a drought year, headwater streams in both urban and non-urban sites had significant concentrations of Fe(II) that were discharged from groundwater sources and rapidly oxidized by iron-oxidizing bacteria. During a wet year, the concentrations of Fe(II) were higher in headwater urban streams than in the non-urban streams. This suggests that impervious surfaces in headwater urban watersheds prevent the recharge of oxygen-rich waters during storm events, which maintains iron-rich groundwater discharge to the stream. Downstream changes in water chemistry are prominent in cement-lined urban channels because they are associated with distinctive microbial communities. The headwater zones of channelized streams are dominated by iron-ozidizing bacteria, that are replaced downstream by manganese-oxidizing zones, and replaced further downstream by biofilms dominated by photosynthesizing cyanobacteria. The reaches dominated by cyanobacteria exhibit diurnal changes in pH due to uptake of CO2 for photosynthesis. Diurnal changes range from 7.5 to 8.8 in the summer months to 7.0 to 7.5 in the cooler months, indicating both the impact of photosynthesis and the additional source of alkalinity provided by concrete. The dissolved oxygen, pH, and other characteristics of tributaries dominated by cyanobacteria are similar to the water chemistry characteristics observed in much larger urban river channels further downstream. These downstream redox zonations, microbial habitats, and pH characteristics observed in channelized tributaries are very different from non-urban watersheds in the Maryland Coastal Plain, which have pH values less than 7 and do not have the prominent redox zonations and associated microbial habitats. These downstream changes in redox chemistry and pH in urban stream channels have implications for the transport and retention of heavy metals in urban streams.

The biogeochemistry of bioenergy landscapes: carbon, nitrogen, and water considerations.

Science.gov (United States)

Robertson, G Philip; Hamilton, Stephen K; Del Grosso, Stephen J; Parton, William J

2011-06-01

The biogeochemical liabilities of grain-based crop production for bioenergy are no different from those of grain-based food production: excessive nitrate leakage, soil carbon and phosphorus loss, nitrous oxide production, and attenuated methane uptake. Contingent problems are well known, increasingly well documented, and recalcitrant: freshwater and coastal marine eutrophication, groundwater pollution, soil organic matter loss, and a warming atmosphere. The conversion of marginal lands not now farmed to annual grain production, including the repatriation of Conservation Reserve Program (CRP) and other conservation set-aside lands, will further exacerbate the biogeochemical imbalance of these landscapes, as could pressure to further simplify crop rotations. The expected emergence of biorefinery and combustion facilities that accept cellulosic materials offers an alternative outcome: agricultural landscapes that accumulate soil carbon, that conserve nitrogen and phosphorus, and that emit relatively small amounts of nitrous oxide to the atmosphere. Fields in these landscapes are planted to perennial crops that require less fertilizer, that retain sediments and nutrients that could otherwise be transported to groundwater and streams, and that accumulate carbon in both soil organic matter and roots. If mixed-species assemblages, they additionally provide biodiversity services. Biogeochemical responses of these systems fall chiefly into two areas: carbon neutrality and water and nutrient conservation. Fluxes must be measured and understood in proposed cropping systems sufficient to inform models that will predict biogeochemical behavior at field, landscape, and regional scales. Because tradeoffs are inherent to these systems, a systems approach is imperative, and because potential biofuel cropping systems and their environmental contexts are complex and cannot be exhaustively tested, modeling will be instructive. Modeling alternative biofuel cropping systems converted from different starting points, for example, suggests that converting CRP to corn ethanol production under conventional tillage results in substantially increased net greenhouse gas (GHG) emissions that can be only partly mitigated with no-till management. Alternatively, conversion of existing cropland or prairie to switchgrass production results in a net GHG sink. Outcomes and policy must be informed by science that adequately quantifies the true biogeochemical costs and advantages of alternative systems.

The growing human footprint on coastal and open-ocean biogeochemistry.

Science.gov (United States)

Doney, Scott C

2010-06-18

Climate change, rising atmospheric carbon dioxide, excess nutrient inputs, and pollution in its many forms are fundamentally altering the chemistry of the ocean, often on a global scale and, in some cases, at rates greatly exceeding those in the historical and recent geological record. Major observed trends include a shift in the acid-base chemistry of seawater, reduced subsurface oxygen both in near-shore coastal water and in the open ocean, rising coastal nitrogen levels, and widespread increase in mercury and persistent organic pollutants. Most of these perturbations, tied either directly or indirectly to human fossil fuel combustion, fertilizer use, and industrial activity, are projected to grow in coming decades, resulting in increasing negative impacts on ocean biota and marine resources.

CLM4-BeTR, a generic biogeochemical transport and reaction module for CLM4: model development, evaluation, and application

Directory of Open Access Journals (Sweden)

J. Y. Tang

2013-01-01

Full Text Available To improve regional and global biogeochemistry modeling and climate predictability, we have developed a generic reactive transport module for the land model CLM4 (called CLM4-BeTR (Biogeochemical Transport and Reactions. CLM4-BeTR represents the transport, interactions, and biotic and abiotic transformations of an arbitrary number of tracers (aka chemical species in an arbitrary number of phases (e.g., dissolved, gaseous, sorbed, aggregate. An operator splitting approach was employed and consistent boundary conditions were derived for each modeled sub-process. Aqueous tracer fluxes, associated with hydrological processes such as surface run-on and run-off, belowground drainage, and ice to liquid conversion were also computed consistently with the bulk water fluxes calculated by the soil physics module in CLM4. The transport code was evaluated and found in good agreement with several analytical test cases using a time step of 30 min. The model was then applied at the Harvard Forest site with a representation of depth-dependent belowground biogeochemistry. The results indicated that, at this site, (1 CLM4-BeTR was able to simulate soil–surface CO₂ effluxes and soil CO₂ profiles accurately; (2 the transient surface CO₂ effluxes calculated based on the tracer transport mechanism were in general not equal to the belowground CO₂ production rates with the magnitude of the difference being a function of averaging timescale and site conditions: differences were large (−20 ~ 20% on hourly, smaller (−5 ~ 5% at daily timescales, and persisted to the monthly timescales with a smaller magnitude (<4%; (3 losses of CO₂ through processes other than surface gas efflux were less than 1% of the overall soil respiration; and (4 the contributions of root respiration and heterotrophic respiration have distinct temporal signals in surface CO₂ effluxes and soil CO₂ concentrations. The

The Science of Middle Nature

Science.gov (United States)

Pataki, D. E.; Pincetl, S.

2012-12-01

In the field of biogeochemistry, urbanization is often considered as an "alteration" or "disturbance" to the earth's surface and its natural processes. This view is an outcome of the view of nature inherent in earth system science and ecology, in which nature is defined as separate from humans and society. However, other disciplines are based in alternative views of nature in which humans are more integral components of the landscape. Urban planning, landscape architecture, agriculture, and horticulture, for example, more fully integrate the role of landscape design and management in the functioning of human-dominated ecosystems. We suggest that the field of urban biogeochemistry has been somewhat limited by the predominant, disturbance-based view of the role of nature in cities, and that more deeply evaluating and broadening the concept of nature inherent in studies of urban processes can enhance our understanding of the role of urbanization in the earth system. A particularly useful concept is the "middle nature" proposed by Cosgrove (1993), which serves a purpose of "actively transforming nature into culture." It is this view of urban landscapes as middle nature, or transformation of urban space into human-dominated nature with a purpose, that is lacking from the current scientific discourse about the role of biogeochemistry in urban ecosystem services. A scientific evaluation of middle nature implies studying the performance of urban designs to meet intended cultural and environmental goals, including beauty, social equity, governance, and social capital as well as environmental quality. We describe our work in evaluating the transformed urban landscapes of Los Angeles from multiple perspectives that focus on urban livability, equity, and beauty as well as the physical impacts of plants and soils on the environment. The outcomes of this process do not necessary meet the traditional demands of biophysical ecology such as utilizing native species, maximizing

The Science of Middle Nature (Invited)

Science.gov (United States)

Pataki, D. E.; Pincetl, S.; Hinners, S.

2013-12-01

In the field of biogeochemistry, urbanization is often considered as an 'alteration' or 'disturbance' to the earth's surface and its natural processes. This view is an outcome of the view of nature inherent in earth system science and ecology, in which nature is defined as separate from humans and society. However, other disciplines are based in alternative views of nature in which humans are more integral components of the landscape. Urban planning, landscape architecture, agriculture, and horticulture, for example, more fully integrate the role of landscape design and management in the functioning of human-dominated ecosystems. We suggest that the field of urban biogeochemistry has been somewhat limited by the predominant, disturbance-based view of the role of nature in cities, and that more deeply evaluating and broadening the concept of nature inherent in studies of urban processes can enhance our understanding of the role of urbanization in the earth system. A particularly useful concept is the 'middle nature' proposed by Cosgrove (1993), which serves a purpose of 'actively transforming nature into culture.' It is this view of urban landscapes as middle nature, or transformation of urban space into human-dominated nature with a purpose, that is lacking from the current scientific discourse about the role of biogeochemistry in urban ecosystem services. A scientific evaluation of middle nature implies studying the performance of urban designs to meet intended cultural and environmental goals, including beauty, social equity, governance, and social capital as well as environmental quality. We describe our work in evaluating the transformed urban landscapes of Los Angeles and Salt Lake City from multiple perspectives that focus on urban livability, equity, and beauty as well as the physical impacts of plants and soils on the environment. The outcomes of this process do not necessary meet the traditional demands of biophysical ecology such as utilizing native

Uncertainty in Earth System Models: Benchmarks for Ocean Model Performance and Validation

Science.gov (United States)

Ogunro, O. O.; Elliott, S.; Collier, N.; Wingenter, O. W.; Deal, C.; Fu, W.; Hoffman, F. M.

2017-12-01

The mean ocean CO2 sink is a major component of the global carbon budget, with marine reservoirs holding about fifty times more carbon than the atmosphere. Phytoplankton play a significant role in the net carbon sink through photosynthesis and drawdown, such that about a quarter of anthropogenic CO2 emissions end up in the ocean. Biology greatly increases the efficiency of marine environments in CO2 uptake and ultimately reduces the impact of the persistent rise in atmospheric concentrations. However, a number of challenges remain in appropriate representation of marine biogeochemical processes in Earth System Models (ESM). These threaten to undermine the community effort to quantify seasonal to multidecadal variability in ocean uptake of atmospheric CO2. In a bid to improve analyses of marine contributions to climate-carbon cycle feedbacks, we have developed new analysis methods and biogeochemistry metrics as part of the International Ocean Model Benchmarking (IOMB) effort. Our intent is to meet the growing diagnostic and benchmarking needs of ocean biogeochemistry models. The resulting software package has been employed to validate DOE ocean biogeochemistry results by comparison with observational datasets. Several other international ocean models contributing results to the fifth phase of the Coupled Model Intercomparison Project (CMIP5) were analyzed simultaneously. Our comparisons suggest that the biogeochemical processes determining CO2 entry into the global ocean are not well represented in most ESMs. Polar regions continue to show notable biases in many critical biogeochemical and physical oceanographic variables. Some of these disparities could have first order impacts on the conversion of atmospheric CO2 to organic carbon. In addition, single forcing simulations show that the current ocean state can be partly explained by the uptake of anthropogenic emissions. Combined effects of two or more of these forcings on ocean biogeochemical cycles and ecosystems

Insights from stable S and O isotopes into biogeochemical processes and genesis of Lower Cambrian barite–pyrite concretions of South China

Digital Repository Service at National Institute of Oceanography (India)

Goldberg, T.; Mazumdar, A.; Strauss, H.; Shields, G.

water trace metal chemistry of laminated sediments from the Gulf of California, Mexico. Marine Chemistry 14, 89-106. Canfield, D.E., 2001. Biogeochemistry of sulphur isotopes. In: Valley, J.W. & Cole, D.R. (Eds.), Stable Isotope Geochemistry. Reviews.... Age curves of sulphur and oxygen isotopes in marine sulphate and their mutual interpretation. Chemical Geology 28, 199-206. Coleman, M.L. & Raiswell, R., 1981. Carbon, oxygen and sulphur isotope variations in concretions from the Upper Lias of N...

Modern Statistical Methods in Oceanography: A Hierarchical Perspective

OpenAIRE

Wikle, Christopher K.; Milliff, Ralph F.; Herbei, Radu; Leeds, William B.

2013-01-01

Processes in ocean physics, air-sea interaction and ocean biogeochemistry span enormous ranges in spatial and temporal scales, that is, from molecular to planetary and from seconds to millennia. Identifying and implementing sustainable human practices depend critically on our understandings of key aspects of ocean physics and ecology within these scale ranges. The set of all ocean data is distorted such that three- and four-dimensional (i.e., time-dependent) in situ data are very sparse, whil...

A Modeling Comparison of Methanogenesis from Noncompetitive vs Competitive Substrates in a Simulated Hypersaline Microbial Mat

Science.gov (United States)

Decker, K. L.; Potter, C.; Hoehler, T.

2005-12-01

The well-documented assumption about methanogens that co-occur in hypersaline mat communities with sulfate-reducing bacteria (SRB) is that they rely entirely on non-competitive substrates for methanogenesis. The reason for this is that during sulfate reduction, sulfur-reducing bacteria efficiently utilize H2, leaving a concentration too low for methanogenesis. Early results from recent work on a hypersaline microbial mat from salt evaporation ponds of Guerrero Negro, Baja, Mexico cast doubt that methanogenesis only occurs via non-competitive substrates, because it shows an excess of H2 in the mat rather than a paucity. We explore the use of our simulation model of the microbial biogeochemistry of a hypersaline mat (named MBGC) to compare methane production rates in a 1 cm thick mat when the methanogens use competitive substrates versus noncompetitive substrates. In the `non-competitive substrate' version of the model, methanogens rely exclusively on methylated amines that are accumulated as compatible solutes in cyanobacteria and released after lysis. In contrast, the `competitive substrate' models examine methanogen use of substrates (such as H2 + acetate) with different SRB population sizes (from absent to low). The comparison of these models of methane and sulfide biogeochemistry of a hypersaline mat has both ecological and geobiological significance, as one hypothesis of Archean microbial mats is that they existed in a low sulfate environment.

The challenge and countermeasure for radioactivity monitor in ocean--the reflection derived from Fukushima nuclear power plant accident

International Nuclear Information System (INIS)

Liu Guangshan

2014-01-01

Environmental radioactivity monitor (ERM) follows with interest raising level, sink and transportation of radioactive materials in the environment. There are two kinds of challenges for marine radioactivity monitor (MRM), for which one concerned with facilities and methods that lead the very difficult measurement of MRM. Up to now, the bulk of sample must collected and prepared for most MRM by radiometry (counting method) and long acquisition period is needed. The long time from sampling to derived results postponed the time of the scientists and government officials learning contamination distribution information. Developing accelerator mass spectrometry (AMS) can overcome above difficulty because AMS method need one tenth of sample and one tenth measuring time needed by radiometric method. The second challenge is lack of the behavior research of radionuclide in the ocean. In the ocean, radionuclide behavior is constrained by physical and biogeochemical process, following that the radionuclides are transported from released sea area to where far from source area, from upper water to deep and bottom waters, and buried to sediment. There are some reports about radionuclide transportation with physical oceanographical process, but few paper about radionuclide biogeochemistry has been found. Lesser theory knowledge and lesser investigation data make scientists worked on MRM puzzling. The radionuclide behavior in the ocean can be studied by the method used in marine biogeochemistry. (author)

The Role of Heterotrophic Microbial Communities in Estuarine C Budgets and the Biogeochemical C Cycle with Implications for Global Warming: Research Opportunities and Challenges.

Science.gov (United States)

Anderson, O Roger

2016-05-01

Estuaries are among the most productive and economically important marine ecosystems at the land-ocean interface and contribute significantly to exchange of CO2 with the atmosphere. Estuarine microbial communities are major links in the biogeochemical C cycle and flow of C in food webs from primary producers to higher consumers. Considerable attention has been given to bacteria and autotrophic eukaryotes in estuarine ecosystems, but less research has been devoted to the role of heterotrophic eukaryotic microbes. Current research is reviewed here on the role of heterotrophic eukaryotic microbes in C biogeochemistry and ecology of estuaries, with particular attention to C budgets, trophodynamics, and the metabolic fate of C in microbial communities. Some attention is given to the importance of these processes in climate change and global warming, especially in relation to sources and sinks of atmospheric CO2 , while also documenting the current paucity of research on the role of eukaryotic microbes that contribute to this larger question of C biogeochemistry and the environment. Some recommendations are made for future directions of research and opportunities of applying newer technologies and analytical approaches to a more refined analysis of the role of C in estuarine microbial community processes and the biogeochemical C cycle. © 2015 The Author Journal of Eukaryotic Microbiology © 2015 International Society of Protistologists.

Microbial and biogeochemical responses to projected future nitrate enrichment in the California upwelling system

Directory of Open Access Journals (Sweden)

Katherine Rose Marie Mackey

2014-11-01

Full Text Available Coastal California is a dynamic upwelling region where nitrogen (N and iron (Fe can both limit productivity and influence biogeochemistry over different spatial and temporal scales. With global change, the flux of nitrate from upwelling is expected to increase over the next century, potentially driving additional oceanic regions toward Fe limitation. In this study we explored the effect of changes in Fe/N ratio on native phytoplankton from five currently Fe-replete sites near the major California upwelling centers at Bodega Bay and Monterey Bay using nutrient addition incubation experiments. Despite the high nitrate levels (13-30 M in the upwelled water, phytoplankton at three of the five sites showed increased growth when 10 M nitrate was added. None of the sites showed enhanced growth following addition of 10 nM Fe. Nitrate additions favored slow sinking single-celled diatoms over faster sinking chain-forming diatoms, suggesting that future increases in nitrate flux could affect carbon and silicate export and alter grazer populations. In particular, solitary cells of Cylindrotheca were more abundant than the toxin-producing genus Pseudonitzschia following nitrate addition. These responses suggest the biogeochemistry of coastal California could change in response to future increases in nitrate, and multiple stressors like ocean acidification and hypoxia may further result in ecosystem shifts.

Impact of sinking carbon flux on accumulation of deep-ocean carbon in the Northern Indian Ocean

Digital Repository Service at National Institute of Oceanography (India)

Sarma, V.V.S.S.; DileepKumar, M.; Saino, T.

calculations using 14 C activity arises from the separation of natural 90 Biogeochemistry (2007) 82:89–100 123 and bomb-produced 14 C. Rubin and Key (2002) proposed the potential alkalinity method to achieve the separation. However, they found anomalous scatter... in the relationship between 14 C and potential alkalinity caused by data from the northern Indian Ocean (north of equator) and attributed that to the possible transportation of bomb radiocarbon, as carbonate particles from the surface ocean to the sediment...

The Fate of Atmospherically Derived Pb in Central European Catchments: Insights from Spatial and Temporal Pollution Gradients and Pb Isotope Ratios

Czech Academy of Sciences Publication Activity Database

Bohdálková, Leona; Novák, M.; Štěpánová, M.; Foltová, D.; Chrastný, V.; Miková, J.; Kuběna, Aleš Antonín

2014-01-01

Roč. 48, č. 8 (2014), s. 4336-4433 ISSN 0013-936X R&D Projects: GA MŠk ED1.1.00/02.0070 Institutional support: RVO:67985556 ; RVO:67179843 Keywords : AMBIENT AIR-QUALITY * LEAD BIOGEOCHEMISTRY * DEPOSITION TRENDS * NORTHERN ENGLAND * CENTRAL ONTARIO * FOREST SOILS * PEAT BOGS * WATERS * ELEMENT * METALS Subject RIV: DN - Health Impact of the Environment Quality; EH - Ecology, Behaviour (UEK-B) Impact factor: 5.330, year: 2014 http://library.utia.cas.cz/separaty/2014/E/kubena-0433722.pdf

Anaerobic nitrification–denitrification mediated by Mn-oxides in meso-tidal sediments: Implications for N2 and N2O production..

Digital Repository Service at National Institute of Oceanography (India)

Fernandes, S.O.; Javanaud, C.; Aigle, A.; Michotey, V.D.; Guasco, S.; Deborde, J.; Deflandre, B.; Anschutz, P.; Bonin, P.C.

. Interactions between metal oxides and species of nitrogen and iodine in bioturbated marine sediments. Geochim. Cosmochim. Acta 64, 2751–2763. Bartlett, R., Mortimer, R.J.G., Morris, K.M., 2007. The biogeochemistry of a manganese-rich Scottish sea loch...: Implications for the study of anoxic nitrification. Cont. Shelf Res. 27, 1501–1509. Bartlett, R., Mortimer, R.J.G., Morris, K.M., 2008. Anoxic nitrification: Evidence from Humber Estuary sediments (UK). Chem. Geol. 250, 29–39. Baumann, P., Baumann, L., 1981...

Biogeochemistry of arsenic in natural waters: The importance of methylated species

Energy Technology Data Exchange (ETDEWEB)

Anderson, L.C.D.; Bruland, K.W. (Univ. of California, Santa Cruz (USA))

1991-03-01

Water samples from a number of lakes and estuaries, mostly in California, showed measurable concentrations of methylated arsenic (equivalent to 1-59% of total As) with the exception of one highly alkaline lake. Neither depleted phosphate concentrations nor high dissolved salts correlated with the appearance of methylated forms of As. A temporal study of As speciation in Davis Creek Reservoir, a seasonally anoxic lake in northern California, demonstrated that dimethylarsinic acid increased sufficiently to become the dominant form of dissolved As within the surface photic zone during late summer and fall. Methylated forms decreased while arsenate increased when the lake over-turned in early December, which suggested a degradation of dimethylarsinic acid to arsenate.

Plant, Microbiome, and Biogeochemistry: Quantifying moss-associated N fixation in Alaska

Science.gov (United States)

Stuart, J.; Mack, M. C.; Holland Moritz, H.; Fierer, N.; McDaniels, S.; Lewis, L.

2017-12-01

The future carbon (C) sequestration potential of the Arctic and boreal zones, currently the largest terrestrial C sink globally, is linked to nitrogen (N) cycling and N availability vis-a-vis C accumulation and plant species composition. Pristine environments in Alaska have low anthropogenic N deposition (<1 kg N ha-1 yr-1), and the main source of new N to these ecosystems is through previously overlooked N-fixation from microbial communities on mosses. Despite the importance of moss associated N-fixation, the relationship between moss species, microbial communities, and fixation rates remains ambiguous. In the summer of 2016, the fixation rates of 20 moss species from sites around both Fairbanks and Toolik Lake were quantified using 15N2 incubations. Subsequently, the microbial community and moss genome of the samples were also analyzed by collaborators. The most striking result is that all sampled moss genera fixed N, including well-studied feather mosses such as Hylocomium splendens and Pleurozium schreberi as well as less common but ecologically relevant mosses such as Aulacomnium spp., Dicranum spp., Ptilium crista-castrensis, and Tomentypnum nitens. Across all samples, preliminary fixation rates ranged from 0.004-19.994 µg N g-1 moss d-1. Depending upon percent cover, moss-associated N fixation is the largest input of new N to the ecosystem. Given this, linking variation in N-fixation rates to microbial and moss community structures can be helpful in predicting future trends of C and N cycling in northern latitudes. Vegetation changes, alterations in downstream biogeochemical N processes, and anthropogenic N deposition could all interact with or alter moss associated N-fixation, thereby changing ecosystem N inputs. Further elucidation of the species level signal in N-fixation rates and microbial community will augment our knowledge of N cycling in northern latitudes, both current and future.

MESOSCALE BIOTRANSFORMATIONS OF URANIUM IN SEDIMENTS AND SOILS (Program Element: Biogeochemistry)

International Nuclear Information System (INIS)

Tetsu Tokunaga; Jiamin Wan; Brodic, Eoin; Yongman Kim; Hazen, Terry; Firestone, Mary; Herman, Don; Sutton, Steve; Newville, Matt; Lanzirotti, Tony; Rao, Bill

2006-01-01

In-situ bioreduction is being considered as a remediation strategy for uranium (U) contaminated sediments because of its potentially low cost, and because short-term studies support its feasibility. However, any in-situ approach for immobilizing U will require assurance of either permanent fixation, or of very low release rates into the biosphere. Our long-term laboratory studies have shown that reoxidation of bioreduced UO 2 can occur even under reducing (methanogenic) conditions sustained by continuous infusion of lactate. The biogeochemical processes underlying this finding need to be understood. Our current research is designed to identify mechanisms responsible for anaerobic U oxidation, and identify effects of key factors controlling long-term stability of bioreduced U. These include: (1) effects of organic carbon (OC) concentrations and supply rates on stability of bioreduced U, (2) influences of pH on U(IV)/U(VI) redox equilibrium, (3) the roles of Fe- and Mn-oxides as potential U oxidants in sediments, and (4) the role of microorganisms in U reoxidation. Findings from some of these studies are summarized here

Biogeochemistry of Redox at Repository Depth and Implications for the Canister

Energy Technology Data Exchange (ETDEWEB)

Bath, Adrian; Hermansson, Hans-Peter

2009-08-15

The present groundwater chemical conditions at the candidate sites for a spent nuclear fuel repository in Sweden (the Forsmark and Laxemar sites) and processes affecting its future evolution comprise essential conditions for the evaluation of barrier performance and long-term safety. This report reviews available chemical sampling information from the site investigations at the candidate sites, with a particular emphasis on redox active groundwater components and microbial populations that influence redox affecting components. Corrosion of copper canister material is the main barrier performance influence of redox conditions that is elaborated in the report. One section addresses native copper as a reasonable analogue for canister materials and another addresses the feasibility of methane hydrate ice accumulation during permafrost conditions. Such an accumulation could increase organic carbon availability in scenarios involving microbial sulphate reduction. The purpose of the project is to evaluate and describe the available knowledge and data for interpretation of geochemistry, microbiology and corrosion in safety assessment. A conclusive assessment of the sufficiency of information can, however, only be done in the future context of a full safety assessment. The authors conclude that SKB's data and models for chemical and microbial processes are adequate and reasonably coherent. The redox conditions in the repository horizon are predominantly established through the SO{sub 4}2-/HS- and Fe3+/Fe2+ redox couples. The former may exhibit a more significant buffering effect as suggested by measured Eh values, while the latter is associated with a lager capacity due to abundant Fe(II) minerals in the bedrock. Among a large numbers of groundwater features considered in geochemical equilibrium modelling, Eh, pH, temperature and concentration of dissolved sulphide comprise the most essential canister corrosion influences. Groundwater sulphide may originate from sulphide minerals and ongoing sulphate reduction as indicated by SRB populations, and may be limited by organic carbon availability. Another possible route for sulphate reduction is by coupling with anaerobic methane oxidation. However, during present day conditions methane levels at Forsmark and Laxemar are probably too low for any essential sulphide production by that route. Methane hydrate could accumulate in fractures and repository void spaces beneath permafrost, but the potential impacts would be minimised by low porosity in crystalline rocks down to and below repository depth

Biogeochemistry and ecology of Pyrosoma spinosum from the Central Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Gauns, M.; Mochemadkar, S.; Pratihary, A.K.; Roy, R.; Naqvi, S.W.A.

and picoeukaryotes were determined in glutaraldehyde (1% final concentration) fixed samples. All samples were frozen instantly in liquid nitrogen. Population was identified on FACSCalibur (Becton-Dickinson Biosciences, Franklin Lakes, NJ, USA) flow cytometer...

Biogeochemistry of Fe and Tc Reduction and Oxidation in FRC Sediment

International Nuclear Information System (INIS)

John M, Zachara; James K, Fredrickson; Ravi K, Kukkadapu; Steven C, Smith; David W, Kennedy

2004-01-01

The objectives are: (1) To rigorously characterize the distribution of Fe(II) and Fe(III) in FRC sediment. (2) To identify changes to Fe(II)/Fe(III) distribution and concentration resulting from DIRB activity. (3) To determine the dependence of Tc(VII) reduction rate on biogenic Fe(II) and it's forms. (4) To establish tendency of Tc(IV) and biogenic Fe(II) to oxidize and their effects on Tc immobilization. The mineralogic and chemical properties of the pristine, bioreduced, and chemically extracted FRC sediments were characterized by X-ray fluorescence (XRF), X-ray diffraction (XRD), X-ray microscopy (XRM, at the PNC-CAT beamline at APS), Moessbauer spectroscopy, and scanning and transmission electron microscopy with lattice fringe imaging. Chemical extraction included dithionite-citrate-bicarbonate (DCB), acid ammonium oxalate (AAO), and hydroxylamine hydrochloride (HAH). The FRC sediment was incubated under anoxic conditions with the facultative dissimilatory metal-reducing bacterium Shewanella putrefaciens, strain CN32 in defined aqueous solutions/media with bicarbonate and PIPES buffers for time periods exceeding 75 d. Lactate was used as the electron donor. Aqueous and sorbed Fe(II) (ferrozine assay and 0.5 N HCl extraction) and Mn(II) (ICP-MS and 10 mM CuSO 4 extraction), and pH were monitored to define the reduction progress and extent. The bioreduced materials were characterized using the abovementioned techniques. Bioreduced (pasteurized) sediment or chemically extracted/reduced sediment spiked with Fe(II) was washed with a PIPES buffer/electrolyte solution, and spiked with NaTc(VII)O 4 to yield a concentration of 20 (micro)M. The Tc(VII)-spiked samples were agitated and equilibrated at 25 C and sampled over time to assess the Tc(VII) reduction rate. Selected sediment samples containing 20 (micro)M of reduced Tc [Tc(IV)] were subjected to oxidation by: (1) successive headspace replacements of air, and (2) open system equilibration with air. Removed aqueous samples were filtered (< 2 (micro)m) and counted to determine the Tc(VII) concentration. Thin sections of the bioreduced/chemically reduced Tc(VII) reacted/oxidized sediments were analyzed by backscattered electron microscopy and X-ray microspectroscopy.

Biogeochemistry of Lead. Its Release to the Environment and Chemical Speciation.

Science.gov (United States)

Cullen, Jay T; McAlister, Jason

2017-04-10

Lead (Pb) is a metal that is not essential for life processes and proves acutely toxic to most organisms. Compared to other metals Pb is rather immobile in the environment but still its biogeochemical cycling is greatly perturbed by human activities. In this review we present a summary of information describing the physical and chemical properties of Pb, its distribution in crustal materials, and the processes, both natural and anthropogenic, that contribute to the metal's mobilization in the biosphere. The relatively high volatility of Pb metal, low melting point, its large ionic radius, and its chemical speciation in aquatic systems contributes to its redistribution by anthropogenic and natural processes. The biogeochemical cycle of Pb is significantly altered by anthropogenic inputs. This alteration began in antiquity but accelerated during the industrial revolution, which sparked increases in both mining activities and fossil fuel combustion. Estimates of the flux of Pb to the atmosphere, its deposition and processing in soils and freshwater systems are presented. Finally, the basin scale distribution of dissolved Pb in the ocean is interpreted in light of the chemical speciation and association with inorganic and organic particulate matter. The utility of stable radiogenic Pb isotopes, as a complement to concentration data, to trace inputs to the ocean, better understand the biogeochemical cycling of Pb and track water mass circulation in the ocean is discussed. An ongoing international survey of trace elements and their isotopes in seawater will undoubtedly increase our understanding of the deposition, biogeochemical cycling and fate of this infamous toxic metal.

Influence of carbon sequestration on biogeochemistry of carbon in the ocean

Digital Repository Service at National Institute of Oceanography (India)

Sarma, V.V.S.S

stream_size 8 stream_content_type text/plain stream_name Proc_Natl_Conf_Global_Temp_Rise_2007_125.pdf.txt stream_source_info Proc_Natl_Conf_Global_Temp_Rise_2007_125.pdf.txt Content-Encoding ISO-8859-1 Content-Type text...

Poly-P storage by natural biofilms in streams with varying biogeochemistry

Science.gov (United States)

Carrick, H. J.

2015-12-01

Anthropogenic inputs of nitrogen (N) and phosphorus (P) have increased in many watersheds throughout the world; these inputs have been linked to the eutrophication of inland and coastal waters worldwide. We selected and surveyed 20, third-order streams that supported a range of water column biogeochemical conditions (conductivity, nutrient concentrations) located in the mid-Atlantic region, USA. Biofilm biomass, algal taxonomic composition, and nutrient stoichiometry (C, N, P, and poly-P) were measured at all stream sites. Pulse-amplitude modulation fluorometry (PAM) was used to estimate photosynthetic parameters for stream biofilms (e.g., alpha, Pmax), while microbiology techniques were used to verify poly-P storage by pro- and eukaryotic components of the biofilm (e.g., epi-fluorescent staining). As anticipated, chlorophyll ranged over 2 orders of magnitude among the streams (range 10-1,000 mg/m2). Biofilm chlorophyll and algal biovolume levels increased with water column nutrient contents, while the C:P ratio within the biofilm decreased. Both pro and eukaryotic organisms were present in resident biofilms and actively stored intracellular poly-P. Finally, the rate of photosynthetic within the biofilms appeared to be driven the nutritional condition of the biofilms; pmax and alpha values increased with significantly with stream biofilm poly-P content (r2 = 0.35 and 0.44, respectively). These results indicated that where nutrients are plentiful, biofilms P storage is favored, and this is likely a key regulator of stream biofilm biomass and productivity.

Biogeochemistry of the MAximum TURbidity Zone of Estuaries (MATURE): some conclusions

NARCIS (Netherlands)

Herman, P.M.J.; Heip, C.H.R.

1999-01-01

In this paper, we give a short overview of the activities and main results of the MAximum TURbidity Zone of Estuaries (MATURE) project. Three estuaries (Elbe, Schelde and Gironde) have been sampled intensively during a joint 1-week campaign in both 1993 and 1994. We introduce the publicly available

Bridging food webs, ecosystem metabolism, and biogeochemistry using ecological stoichiometry theory

DEFF Research Database (Denmark)

Welti, Nina; Striebel, Maren; Ulseth, Amber J.

2017-01-01

process rates). ES theory holds the promise to be a unifying concept to link across hierarchical scales of patterns and processes in ecology, but this has not been fully achieved. Therefore, we propose connecting the expertise of aquatic ecologists and biogeochemists with ES theory as a common currency......, we propose that using ES to link nutrient cycling, trophic dynamics, and ecosystem metabolism would allow for a more holistic understanding of ecosystem functions in a changing environment....

Nitrogen biogeochemistry in the oligohaline zone of a New England estuary

Energy Technology Data Exchange (ETDEWEB)

Holmes, R.M.; Peterson, B.J.; Deegan, L.A.; Hughes, J.E.; Fry, B.

2000-02-01

The authors investigated nitrogen cycling in the oligohaline zone of the Parker River estuary in northeastern Massachusetts. They introduced an isotopic tracer ({sup 15}N-NO{sub 3}{sup {minus}}) for 27 days in August 1996 to help determine how watershed-derived nitrogen moves through the upper estuary. The amount of tracer added was sufficient to enrich nitrate isotopically by {approximately}100% in the vicinity of the addition but did not influence nitrate concentration appreciably. During typical summer low-flow conditions as occurred during the addition period, essentially all riverine nitrate (including the nitrate tracer) was rapidly removed from the water column by the planktonic diatom Actinocyclus normanii. Export of tracer down-estuary was low during the isotope addition period, in part because of low river discharge. Instead, most of the nitrogen originally assimilated by A. normanii was transferred to sediments in the oligohaline zone. Nitrogen demand by phytoplankton during summer exceeded riverine supply by an order of magnitude. The additional nitrogen came mainly from the regeneration of benthic nitrogen, although some may have come from groundwater. The whole-ecosystem isotope tracer approach applied here was a powerful means of investigating the fate of watershed-derived nitrogen in the upper estuary.

Impact of tropical cyclone on biogeochemistry of the central Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Naik, H.; Naqvi, S.W.A.; Suresh, T.; Narvekar, P.V.

is geographically and tempo- rally limited. As mentioned above, the process does not occur within the area affected by the WICC. The region that was most affected by the cyclone (08A-98, see sections 3.1, 4.1, and 4.2) is at the periphery of the zone of winter...

Biogeochemistry of Redox at Repository Depth and Implications for the Canister

International Nuclear Information System (INIS)

Bath, Adrian; Hermansson, Hans-Peter

2009-08-01

The present groundwater chemical conditions at the candidate sites for a spent nuclear fuel repository in Sweden (the Forsmark and Laxemar sites) and processes affecting its future evolution comprise essential conditions for the evaluation of barrier performance and long-term safety. This report reviews available chemical sampling information from the site investigations at the candidate sites, with a particular emphasis on redox active groundwater components and microbial populations that influence redox affecting components. Corrosion of copper canister material is the main barrier performance influence of redox conditions that is elaborated in the report. One section addresses native copper as a reasonable analogue for canister materials and another addresses the feasibility of methane hydrate ice accumulation during permafrost conditions. Such an accumulation could increase organic carbon availability in scenarios involving microbial sulphate reduction. The purpose of the project is to evaluate and describe the available knowledge and data for interpretation of geochemistry, microbiology and corrosion in safety assessment. A conclusive assessment of the sufficiency of information can, however, only be done in the future context of a full safety assessment. The authors conclude that SKB's data and models for chemical and microbial processes are adequate and reasonably coherent. The redox conditions in the repository horizon are predominantly established through the SO 4 2- /HS - and Fe 3+ /Fe 2+ redox couples. The former may exhibit a more significant buffering effect as suggested by measured Eh values, while the latter is associated with a lager capacity due to abundant Fe(II) minerals in the bedrock. Among a large numbers of groundwater features considered in geochemical equilibrium modelling, Eh, pH, temperature and concentration of dissolved sulphide comprise the most essential canister corrosion influences. Groundwater sulphide may originate from sulphide minerals and ongoing sulphate reduction as indicated by SRB populations, and may be limited by organic carbon availability. Another possible route for sulphate reduction is by coupling with anaerobic methane oxidation. However, during present day conditions methane levels at Forsmark and Laxemar are probably too low for any essential sulphide production by that route. Methane hydrate could accumulate in fractures and repository void spaces beneath permafrost, but the potential impacts would be minimised by low porosity in crystalline rocks down to and below repository depth

The Biogeochemistry of Contaminant Groundwater Plumes Arising from Waste Disposal Facilities

DEFF Research Database (Denmark)

Bjerg, Poul Løgstrup; Albrechtsen, Hans-Jørgen; Kjeldsen, Peter

2014-01-01

Landfills with solid waste are abundant sources of groundwater pollution all over the world. Old uncontrolled municipal landfills are often large, heterogeneous sources with demolition waste, minor fractions of commercial or industrial waste, and organic waste from households. Strongly anaerobic...... leachate with a high content of dissolved organic carbon, salts, and ammonium, as well as specific organic compounds and metals is released from the waste for decades or centuries. Landfill leachate plume hosts a variety of biogeochemical processes, which is the key to understand the significant potential...... and the literature are the following: (1) Local hydrogeological conditions in the landfill area may affect the spreading of the contaminants; (2) investigations of landfill leachate plumes in geologic settings with clayey till deposits and fractured consolidated sediments are lacking; (3) the size of the landfill...

Freeze-Thaw Cycles and Soil Biogeochemistry: Implications for Greenhouse Gas emission

Science.gov (United States)

Rezanezhad, F.; Milojevic, T.; Oh, D. H.; Parsons, C. T.; Smeaton, C. M.; Van Cappellen, P.

2016-12-01

Freeze-thaw cycles represent a major natural climate forcing acting on soils at middle and high latitudes. Repeated freezing and thawing of soils changes their physical properties, geochemistry, and microbial community structure, which together govern the biogeochemical cycling of carbon and nutrients. In this presentation, we focus on how freeze-thaw cycles regulate carbon and nitrogen cycling and how these transformations influence greenhouse gas (GHG) fluxes. We present a novel approach, which combines the acquisition of physical and chemical data in a newly developed experimental soil column system. This system simulates realistic soil temperature profiles during freeze-thaw cycles. A high-resolution, Multi-Fiber Optode (MuFO) microsensor technique was used to detect oxygen (O2) continuously in the column at multiple depths. Surface and subsurface changes to gas and aqueous phase chemistry were measured to delineate the pathways and quantify soil respiration rates during freeze-thaw cycles. The results indicate that the time-dependent release of GHG from the soil surface is influenced by a combination of two key factors. Firstly, fluctuations in temperature and O2 availability affect soil biogeochemical activity and GHG production. Secondly, the recurrent development of a physical ice barrier prevents exchange of gaseous compounds between the soil and atmosphere during freezing conditions; removal of this barrier during thaw conditions increases GHG fluxes. During freezing, O2 levels in the unsaturated zone decreased due to restricted gas exchange with the atmosphere. As the soil thawed, O2 penetrated deeper into the soil enhancing the aerobic mineralization of organic carbon and nitrogen. Additionally, with the onset of thawing a pulse of gas flux occurred, which is attributed to the build-up of respiratory gases in the pore space during freezing. The latter implies enhanced anaerobic respiration as O2 supply ceases when the upper soil layer freezes.

Warming up, turning sour, losing breath: ocean biogeochemistry under global change.

Science.gov (United States)

Gruber, Nicolas

2011-05-28

In the coming decades and centuries, the ocean's biogeochemical cycles and ecosystems will become increasingly stressed by at least three independent factors. Rising temperatures, ocean acidification and ocean deoxygenation will cause substantial changes in the physical, chemical and biological environment, which will then affect the ocean's biogeochemical cycles and ecosystems in ways that we are only beginning to fathom. Ocean warming will not only affect organisms and biogeochemical cycles directly, but will also increase upper ocean stratification. The changes in the ocean's carbonate chemistry induced by the uptake of anthropogenic carbon dioxide (CO(2)) (i.e. ocean acidification) will probably affect many organisms and processes, although in ways that are currently not well understood. Ocean deoxygenation, i.e. the loss of dissolved oxygen (O(2)) from the ocean, is bound to occur in a warming and more stratified ocean, causing stress to macro-organisms that critically depend on sufficient levels of oxygen. These three stressors-warming, acidification and deoxygenation-will tend to operate globally, although with distinct regional differences. The impacts of ocean acidification tend to be strongest in the high latitudes, whereas the low-oxygen regions of the low latitudes are most vulnerable to ocean deoxygenation. Specific regions, such as the eastern boundary upwelling systems, will be strongly affected by all three stressors, making them potential hotspots for change. Of additional concern are synergistic effects, such as ocean acidification-induced changes in the type and magnitude of the organic matter exported to the ocean's interior, which then might cause substantial changes in the oxygen concentration there. Ocean warming, acidification and deoxygenation are essentially irreversible on centennial time scales, i.e. once these changes have occurred, it will take centuries for the ocean to recover. With the emission of CO(2) being the primary driver behind all three stressors, the primary mitigation strategy is to reduce these emissions. © 2011 The Royal Society

Carbon budget in the eastern and central Arabian Sea: An Indian JGOFS synthesis

Digital Repository Service at National Institute of Oceanography (India)

Sarma, V.V.S.S.; Swathi, P.S.; DileepKumar, M.; PrasannaKumar, S.; Bhattathiri, P.M.A.; Madhupratap, M.; Ramaswamy, V.; Sarin, M.M.; Gauns, M.; Ramaiah, N.; Sardessai, S.; DeSousa, S.N.

of its unique monsoon-driven, dynamic, and complex biogeochemistry. The JGOFS (India) I HydfOsphcric-!\\tlllosphcri<: Research Center. Nagoya University, Nagoya, Japan. 2CS1R Centre ti.1r 'Aathcmutical 'Aodeling and Computer Simulation, Banr,alore-: India... while it was between 161 and 203 mg m J in SWM (M. Ciauns et aI., Mierozooplankton playa major role in the food web dynamics of the Arabian Sea, submitted to ,Marine Ecologt, Progress Series, 2002) (hereinafter referred to as Gauns et aI., submitted...

Variability in concentrations and fluxes of methane in the Indian estuaries

Digital Repository Service at National Institute of Oceanography (India)

Rao, G.D.; Sarma, V.V.S.S.

and aerobic conditions in the sediments and water column (Abril and Iversen 2002; Valentine, 2011). In total marine CH4 emission to atmosphere, estuaries, coastal areas and continental shelves account a large fraction (75%) (Bange et al., 1994; Middelburg... and lagoons of Ivory Coast (West Africa). Biogeochemistry 100, 21-37 Krithika, K., R. Purvaja, and R. Ramesh. 2008. Fluxes of methane and nitrous oxide from an Indian mangrove. Current Science 94: 218-224. Mau, S., D.L.Valentine, J.F.Clark, J.Reed, R...

Quaternary phosphorites off the southeast coast of India

Digital Repository Service at National Institute of Oceanography (India)

Rao, V.P.; Michard, A.; Naqvi, S.W.A.; Boettcher, M.E.; Krishnaswamy, R.; Thamban, M.; Natarajan, R.; Borole, D.V.

National Institute of Oceanography, Dona Paula, 403 004, Goa, India b CEREGE, UniÕersity d’Aix Marseille III et CNRS, Fr 6094 et UMR 6536, Europole de l’Arbois, BP 80, 13545 Aix-en-ProÕenceCedex 4, France c Department of Biogeochemistry, Max... Callender and Bowser, 1980; Klinkhammer et al., 1982; Emerson et al., . 1983 . Lead, Zn, Sn and Mo generally associate with sulfide minerals in phosphorites. These elements are Ž below the detection limit in our phosphorites Table . 2 . X-ray diffraction...

Hydrological modelling of the west coast of India

Digital Repository Service at National Institute of Oceanography (India)

Suprit, K.

pleasure. I am thankful to our system administrators Dattaram, Kaushik, Krupesh, Ashok and Sarvesh for providing hassle-free computer and peripheral support. After passing M. Sc., I was looking for a research position and NIO was not on my radar. Roxy, my..., and evaporation. The framework is based on Terrestrial Hydrologic Model with Biogeochemistry (THMB) 2, a numerical model developed by Coe [2000]. THMB model provides a reliable water balance of a river system. Figure 1.7 The Mandovi and Zuari (all rivers digitized...

Uranium exploration techniques

International Nuclear Information System (INIS)

Nichols, C.E.

1984-01-01

The subject is discussed under the headings: introduction (genetic description of some uranium deposits; typical concentrations of uranium in the natural environment); sedimentary host rocks (sandstones; tabular deposits; roll-front deposits; black shales); metamorphic host rocks (exploration techniques); geologic techniques (alteration features in sandstones; favourable features in metamorphic rocks); geophysical techniques (radiometric surveys; surface vehicle methods; airborne methods; input surveys); geochemical techniques (hydrogeochemistry; petrogeochemistry; stream sediment geochemistry; pedogeochemistry; emanometry; biogeochemistry); geochemical model for roll-front deposits; geologic model for vein-like deposits. (U.K.)

BOREAS TGB-3 CH4 and CO2 Chamber Flux Data over NSA Upland Sites

Science.gov (United States)

Savage, Kathleen; Hall, Forrest G. (Editor); Conrad, Sara K. (Editor); Moore, Tim R.

2000-01-01

The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-3) team collected methane and carbon dioxide (CH4, CO2) chamber flux measurements at the Northern Study Area (NSA) Fen, Old Black Spruce (OBS), Young Jack Pine (YJP), and auxiliary sites along Gillam Road and the 1989 burn site. Gas samples were extracted from chambers and analyzed at the NSA lab facility approximately every 7 days during May to September 1994 and June to October 1996. The data are provided in tabular ASCII files.

BOREAS TGB-1/TGB-3 NEE Data over the NSA Fen

Science.gov (United States)

Bellisario, Lianne; Hall, Forrest G. (Editor); Conrad, Sara K. (Editor); Moore, Tim R.

2000-01-01

The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-1) and TGB-3 teams collected several data sets that contributed to understanding the measured trace gas fluxes over sites in the Northern Study Area (NSA). This data set contains Net Ecosystem Exchange of CO2 (NEE) measurements collected with chambers at the NSA fen in 1994 and 1996. Gas samples were extracted approximately every 7 days from chambers and analyzed at the NSA lab facility. The data are provided in tabular ASCII files.

Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions.

Science.gov (United States)

He, Shaomei; Malfatti, Stephanie A; McFarland, Jack W; Anderson, Frank E; Pati, Amrita; Huntemann, Marcel; Tremblay, Julien; Glavina del Rio, Tijana; Waldrop, Mark P; Windham-Myers, Lisamarie; Tringe, Susannah G

2015-05-19

Wetland restoration on peat islands previously drained for agriculture has potential to reverse land subsidence and sequester atmospheric carbon dioxide as peat accretes. However, the emission of methane could potentially offset the greenhouse gas benefits of captured carbon. As microbial communities play a key role in governing wetland greenhouse gas fluxes, we are interested in how microbial community composition and functions are associated with wetland hydrology, biogeochemistry, and methane emission, which is critical to modeling the microbial component in wetland methane fluxes and to managing restoration projects for maximal carbon sequestration. Here, we couple sequence-based methods with biogeochemical and greenhouse gas measurements to interrogate microbial communities from a pilot-scale restored wetland in the Sacramento-San Joaquin Delta of California, revealing considerable spatial heterogeneity even within this relatively small site. A number of microbial populations and functions showed strong correlations with electron acceptor availability and methane production; some also showed a preference for association with plant roots. Marker gene phylogenies revealed a diversity of major methane-producing and -consuming populations and suggested novel diversity within methanotrophs. Methanogenic archaea were observed in all samples, as were nitrate-, sulfate-, and metal-reducing bacteria, indicating that no single terminal electron acceptor was preferred despite differences in energetic favorability and suggesting spatial microheterogeneity and microniches. Notably, methanogens were negatively correlated with nitrate-, sulfate-, and metal-reducing bacteria and were most abundant at sampling sites with high peat accretion and low electron acceptor availability, where methane production was highest. Wetlands are the largest nonanthropogenic source of atmospheric methane but also a key global carbon reservoir. Characterizing belowground microbial communities

Contrasts between the marine and freshwater biological interactions of plutonium and americium

International Nuclear Information System (INIS)

Livingston, H.D.; Bowen, V.T.

1975-01-01

Whether in lakes or the oceans the transuranic elements plutonium and americium are taken up by marine organisms, with concentration factors that would class them as nice, typical heavy metals. There is no evidence for strong, widespread discrimination against the transuranics by either plant or animal absorptive surfaces. In both freshwater and marine situations the major reservoir of Pu and Am soon becomes the sediments, and organisms are more exposed to uptake of these nuclides the closer is their ecological involvement with the sediments. Although there is little evidence that this can be an ionic strength effect, it does appear that Pu may be somewhat more available, biologically, in marine environments, and Am, conversely, in fresh water. We incline to the belief that details of these behaviors are usually controlled by local availability of organic complexers. No compelling evidence exists of increase in Pu concentration at higher levels of food chains; in marine situations this appears true of Am as well, but a few data suggest that in fresh water fish there is a progressive increase, in higher trophic levels, in the ratio Am to Pu. Although marine and fresh water biogeochemistries of transuranics are much more similar than we had expected, it will generally be dangerous to extrapolate from one to the other. In both systems there appears to us no question that we are observing real element biogeochemistry, not the redistribution of inert, labelled, fallout fragments

Modelling nitrous oxide emissions from grazed grassland systems

International Nuclear Information System (INIS)

Wang Junye; Cardenas, Laura M.; Misselbrook, Tom H.; Cuttle, Steve; Thorman, Rachel E.; Li Changsheng

2012-01-01

Grazed grassland systems are an important component of the global carbon cycle and also influence global climate change through their emissions of nitrous oxide and methane. However, there are huge uncertainties and challenges in the development and parameterisation of process-based models for grazed grassland systems because of the wide diversity of vegetation and impacts of grazing animals. A process-based biogeochemistry model, DeNitrification-DeComposition (DNDC), has been modified to describe N 2 O emissions for the UK from regional conditions. This paper reports a new development of UK-DNDC in which the animal grazing practices were modified to track their contributions to the soil nitrogen (N) biogeochemistry. The new version of UK-DNDC was tested against datasets of N 2 O fluxes measured at three contrasting field sites. The results showed that the responses of the model to changes in grazing parameters were generally in agreement with observations, showing that N 2 O emissions increased as the grazing intensity increased. - Highlights: ► Parameterisation of grazing system using grazing intensity. ► Modification of UK D NDC for the UK soil and weather conditions. ► Validation of the UK D NDC against measured data of N 2 O emissions in three UK sites. ► Estimating influence of animal grazing practises on N 2 O emissions. - Grazing system was parameterised using grazing intensity and UK-DNDC model was modified and validated against measured data of N 2 O emissions in three UK sites.

Simultaneous determination of stable carbon, oxygen, and hydrogen isotopes in cellulose.

Science.gov (United States)

Loader, N J; Street-Perrott, F A; Daley, T J; Hughes, P D M; Kimak, A; Levanič, T; Mallon, G; Mauquoy, D; Robertson, I; Roland, T P; van Bellen, S; Ziehmer, M M; Leuenberger, M

2015-01-06

A technological development is described through which the stable carbon-, oxygen-, and nonexchangeable hydrogen-isotopic ratios (δ(13)C, δ(18)O, δ(2)H) are determined on a single carbohydrate (cellulose) sample with precision equivalent to conventional techniques (δ(13)C 0.15‰, δ(18)O 0.30‰, δ(2)H 3.0‰). This triple-isotope approach offers significant new research opportunities, most notably in physiology and medicine, isotope biogeochemistry, forensic science, and palaeoclimatology, when isotopic analysis of a common sample is desirable or when sample material is limited.

The one-sample PARAFAC approach reveals molecular size distributions of fluorescent components in dissolved organic matter

DEFF Research Database (Denmark)

Wünsch, Urban; Murphy, Kathleen R.; Stedmon, Colin

2017-01-01

Molecular size plays an important role in dissolved organic matter (DOM) biogeochemistry, but its relationship with the fluorescent fraction of DOM (FDOM) remains poorly resolved. Here high-performance size exclusion chromatography (HPSEC) was coupled to fluorescence emission-excitation (EEM...... but not their spectral properties. Thus, in contrast to absorption measurements, bulk fluorescence is unlikely to reliably indicate the average molecular size of DOM. The one-sample approach enables robust and independent cross-site comparisons without large-scale sampling efforts and introduces new analytical...... opportunities for elucidating the origins and biogeochemical properties of FDOM...

Mid-Pacific Marine Laboratory. Annual report for the period, 1 October 1977--30 September 1978

Energy Technology Data Exchange (ETDEWEB)

Reese, E.S.; Johnson, V.R. Jr.

1979-03-01

Studies on behavior included reproduction and sociobiology of reef fishes and aggression, hearing, and ultrasonic telemetry in sharks. Ecological studies included population, growth, and mortality studies on birds, corals, crustacea, echinoderms, fishes, molluscs, and rats. Geochemistry studies included biogeochemistry of reef organisms and hydrogeochemistry of groundwater. Geology studies included bioerosion of sea urchins, biology of endolithic processes, and survey of soils. Oceanography studies were conducted on lagoon circulation. Physiological studies were conducted on symbiosis in corals and utilization of organic material by Foraminifera. Studies on systematics of algae, echinoderms, and fishes were conducted. (HLW)

Challenges in integrative approaches to modelling the marine ecosystems of the North Atlantic: Physics to fish and coasts to ocean

DEFF Research Database (Denmark)

Holt, Jason; Icarus Allen, J.; Anderson, Thomas R.

2014-01-01

It has long been recognised that there are strong interactions and feedbacks between climate, upper ocean biogeochemistry and marine food webs, and also that food web structure and phytoplankton community distribution are important determinants of variability in carbon production and export from...... for quantitative tools to support ecosystem-based management initiatives. The purpose of this paper is to review approaches to the modelling of marine ecosystems with a focus on the North Atlantic Ocean and its adjacent shelf seas, and to highlight the challenges they face and suggest ways forward. We consider...

Bacterial Sulfate Reduction Above 100-Degrees-C in Deep-Sea Hydrothermal Vent Sediments

DEFF Research Database (Denmark)

JØRGENSEN, BB; ISAKSEN, MF; JANNASCH, HW

1992-01-01

-reducing bacteria was done in hot deep-sea sediments at the hydrothermal vents of the Guaymas Basin tectonic spreading center in the Gulf of California. Radiotracer studies revealed that sulfate reduction can occur at temperatures up to 110-degrees-C, with an optimum rate at 103-degrees to 106-degrees......-C. This observation expands the upper temperature limit of this process in deep-ocean sediments by 20-degrees-C and indicates the existence of an unknown groUp of hyperthermophilic bacteria with a potential importance for the biogeochemistry of sulfur above 100-degrees-C....

Challenges in modelling spatiotemporally varying phytoplankton blooms in the Northwestern Arabian Sea and Gulf of Oman

Science.gov (United States)

Sedigh Marvasti, S.; Gnanadesikan, A.; Bidokhti, A. A.; Dunne, J. P.; Ghader, S.

2015-07-01

We examine interannual variability of phytoplankton blooms in northwestern Arabian Sea and Gulf of Oman. Satellite data (SeaWIFS ocean color) shows two climatological blooms in this region, a wintertime bloom peaking in February and a summertime bloom peaking in September. A pronounced anti-correlation between the AVISO sea surface height anomaly (SSHA) and chlorophyll is found during the wintertime bloom. On a regional scale, interannual variability of the wintertime bloom is thus dominated by cyclonic eddies which vary in location from one year to another. These results were compared against the outputs from three different 3-D Earth System models. We show that two coarse (1°) models with the relatively complex biogeochemistry (TOPAZ) capture the annual cycle but neither eddies nor the interannual variability. An eddy-resolving model (GFDL CM2.6) with a simpler biogeochemistry (miniBLING) displays larger interannual variability, but overestimates the wintertime bloom and captures eddy-bloom coupling in the south but not in the north. The southern part of the domain is a region with a much sharper thermocline and nutricline relatively close to the surface, in which eddies modulate diffusive nutrient supply to the surface (a mechanism not previously emphasized in the literature). We suggest that for the model to simulate the observed wintertime blooms within cyclones, it will be necessary to represent this relatively unusual nutrient structure as well as the cyclonic eddies. This is a challenge in the Northern Arabian Sea as it requires capturing the details of the outflow from the Persian Gulf.

Enhanced Sulfate Reduction and Carbon Sequestration in Sediments Underlying the Core of the Arabian Sea Oxygen Minimum Zone

Science.gov (United States)

Fernandes, S. Q.; Mazumdar, A.; Peketi, A.; Bhattacharya, S.; Carvalho, M.; Da Silva, R.; Roy, R.; Mapder, T.; Roy, C.; Banik, S. K.; Ghosh, W.

2017-12-01

The oxygen minimum zone (OMZ) of the Arabian Sea in the northern Indian Ocean is one of the three major global sites of open ocean denitrification. The functionally anoxic water column between 150 to 1200 mbsl plays host to unique biogeochemical processes and organism interactions. Little is known, however, about the consequence of the low dissolved oxygen on the underlying sedimentary biogeochemical processes. Here we present, for the first time, a comprehensive investigation of sediment biogeochemistry of the Arabian Sea OMZ by coupling pore fluid analyses with microbial diversity data in eight sediment cores collected across a transect off the west coast of India in the Eastern Arabian Sea. We observed that in sediments underlying the core of the OMZ, high organic carbon sequestration coincides with a high diversity of all bacteria (the majority of which are complex organic matter hydrolyzers) and sulfate reducing bacteria (simple organic compound utilizers). Depth-integrated sulfate reduction rate also intensifies in this territory. These biogeochemical features, together with the detected shallowing of the sulfate-methane interface and buildup of pore-water sulfide, are all reflective of heightened carbon-sulfur cycling in the sediments underlying the OMZ core. Our data suggests that the sediment biogeochemistry of the OMZ is sensitive to minute changes in bottom water dissolved oxygen, and is dictated by the potential abundance and bioavailability of complex to simple carbon compounds which can stimulate a cascade of geomicrobial activities pertaining to the carbon-sulfur cycle. Our findings hold implications in benthic ecology and sediment diagenesis.

Benthic Ammonia Oxidizers Differ in Community Structure and Biogeochemical Potential Across a Riverine Delta

Directory of Open Access Journals (Sweden)

Julian eDamashek

2015-01-01

Full Text Available Nitrogen pollution in coastal zones is a widespread issue, particularly in ecosystems with urban or agricultural watersheds. California’s Sacramento-San Joaquin Delta, at the landward reaches of San Francisco Bay, is highly impacted by both agricultural runoff and sewage effluent, leading to chronically high nutrient loadings. In particular, the massive discharge of ammonium into the Sacramento River has altered this ecosystem by increasing ammonium concentrations and thus changing the stoichiometry of inorganic nitrogen stocks, with potential effects throughout the food web. To date, however, there has been little research examining N biogeochemistry or N-cycling microbial communities in this system. We report the first data on benthic ammonia-oxidizing microbial communities and potential nitrification rates for the Sacramento-San Joaquin Delta, focusing on the functional gene amoA (encoding the α-subunit of ammonia monooxygenase. There were stark regional differences in ammonia-oxidizing communities, with ammonia-oxidizing bacteria (AOB outnumbering ammonia-oxidizing archaea (AOA only in the ammonium-rich Sacramento River. High potential nitrification rates in the Sacramento River suggested these communities may be capable of oxidizing significant amounts of ammonium, compared to the San Joaquin River and the upper reaches of San Francisco Bay. Gene diversity also showed regional patterns, as well as phylogenetically unique ammonia oxidizers in the Sacramento River. The community structure and biogeochemical function of benthic ammonia oxidizers appears related to nutrient loadings. Unraveling the microbial ecology and biogeochemistry of N cycling pathways is a critical step toward understanding how such ecosystems respond to the changing environmental conditions wrought by human development and climate change.

An initial investigation into the organic matter biogeochemistry of the Congo River

Science.gov (United States)

Spencer, Robert G.M.; Hernes, Peter J.; Aufdenkampe, Anthony K.; Baker, Andy; Gulliver, Pauline; Stubbins, Aron; Aiken, George R.; Dyda, Rachael Y.; Butler, Kenna D.; Mwamba, Vincent L.; Mangangu, Arthur M.; Wabakanghanzi, Jose N.; Six, Johan

2012-01-01

The Congo River, which drains pristine tropical forest and savannah and is the second largest exporter of terrestrial carbon to the ocean, was sampled in early 2008 to investigate organic matter (OM) dynamics in this historically understudied river basin. We examined the elemental (%OC, %N, C:N), isotopic (δ13C, Δ14C, δ15N) and biochemical composition (lignin phenols) of coarse particulate (>63 μm; CPOM) and fine particulate (0.7–63 μm; FPOM) OM and DOC, δ13C, Δ14C and lignin phenol composition with respect to dissolved OM (14C = -62.2 ± -13.2‰, n = 5) compared to CPOM and DOM (mean Δ14C = 55.7 ± 30.6‰, n = 4 and 73.4 ± 16.1‰, n = 5 respectively). The modern radiocarbon ages for DOM belie a degraded lignin compositional signature (i.e. elevated acid:aldehyde ratios (Ad:Al) relative to CPOM and FPOM), and indicate that the application of OM degradation patterns derived from particulate phase studies to dissolved samples needs to be reassessed: these elevated ratios are likely attributable to fractionation processes during solubilization of plant material. The relatively low DOM carbon-normalized lignin yields (Λ8; 0.67–1.12 (mg(100 mg OC)-1)) could also reflect fractionation processes, however, they have also been interpreted as an indication of significant microbial or algal sources of DOM. CPOM appears to be well preserved higher vascular plant material as evidenced by its modern radiocarbon age, elevated C:N (17.2–27.1) and Λ8 values (4.56–7.59 (mg(100 mg OC)-1)). In relation to CPOM, the aged FPOM fraction (320–580 ybp 14C ages) was comparatively degraded, as demonstrated by its nitrogen enrichment (C:N 11.4–14.3), lower Λ8 (2.80–4.31 (mg(100 mg OC)-1)) and elevated lignin Ad:Al values similar to soil derived OM. In this study we observed little modification of the OM signature from sample sites near the cities of Brazzaville and Kinshasa to the head of the estuary (~350 km) highlighting the potential for future studies to assess seasonal and long-term OM dynamics from this logistically feasible location and derive relevant information with respect to OM exported to the Atlantic Ocean. The relative lack of OM data for the Congo River Basin highlights the importance of studies such as this for establishing baselines upon which to gauge future change.

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

Science.gov (United States)

Stegen, James C; Johnson, Tim; Fredrickson, James K; Wilkins, Michael J; Konopka, Allan E; Nelson, William C; Arntzen, Evan V; Chrisler, William B; Chu, Rosalie K; Fansler, Sarah J; Graham, Emily B; Kennedy, David W; Resch, Charles T; Tfaily, Malak; Zachara, John

2018-02-08

The hyporheic corridor (HC) encompasses the river-groundwater continuum, where the mixing of groundwater (GW) with river water (RW) in the HC can stimulate biogeochemical activity. Here we propose a novel thermodynamic mechanism underlying this phenomenon and reveal broader impacts on dissolved organic carbon (DOC) and microbial ecology. We show that thermodynamically favorable DOC accumulates in GW despite lower DOC concentration, and that RW contains thermodynamically less-favorable DOC, but at higher concentrations. This indicates that GW DOC is protected from microbial oxidation by low total energy within the DOC pool, whereas RW DOC is protected by lower thermodynamic favorability of carbon species. We propose that GW-RW mixing overcomes these protections and stimulates respiration. Mixing models coupled with geophysical and molecular analyses further reveal tipping points in spatiotemporal dynamics of DOC and indicate important hydrology-biochemistry-microbial feedbacks. Previously unrecognized thermodynamic mechanisms regulated by GW-RW mixing may therefore strongly influence biogeochemical and microbial dynamics in riverine ecosystems.

Microbially-accelerated consolidation of oil sands tailings. Pathway II: solid phase biogeochemistry

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Tariq eSiddique

2014-03-01

Full Text Available Consolidation of clay particles in aqueous tailings suspensions is a major obstacle to effective management of oil sands tailings ponds in northern Alberta, Canada. We have observed that microorganisms indigenous to the tailings ponds accelerate consolidation of mature fine tailings (MFT during active metabolism by using two biogeochemical pathways. In Pathway I, microbes alter porewater chemistry to indirectly increase consolidation of MFT. Here, we describe Pathway II comprising significant, direct and complementary biogeochemical reactions with MFT mineral surfaces. An anaerobic microbial community comprising Bacteria (predominantly Clostridiales, Synergistaceae and Desulfobulbaceae and Archaea (Methanolinea/Methanoregula and Methanosaeta transformed FeIII minerals in MFT to amorphous FeII minerals during methanogenic metabolism of an added organic substrate. Synchrotron analyses suggested that ferrihydrite (5Fe2O3. 9H2O and goethite (α-FeOOH were the dominant FeIII minerals in MFT. The formation of amorphous iron sulfide (FeS and possibly green rust entrapped and masked electronegative clay surfaces in amended MFT. Both Pathways I and II reduced the surface charge potential (repulsive forces of the clay particles in MFT, which aided aggregation of clays and formation of networks of pores, as visualized using cryo-scanning electron microscopy. These reactions facilitated the egress of porewater from MFT and increased consolidation of tailings solids. These results have large-scale implications for management and reclamation of oil sands tailings ponds, a burgeoning environmental issue for the public and government regulators.

Microbially-accelerated consolidation of oil sands tailings. Pathway II: solid phase biogeochemistry.

Science.gov (United States)

Siddique, Tariq; Kuznetsov, Petr; Kuznetsova, Alsu; Li, Carmen; Young, Rozlyn; Arocena, Joselito M; Foght, Julia M

2014-01-01

Consolidation of clay particles in aqueous tailings suspensions is a major obstacle to effective management of oil sands tailings ponds in northern Alberta, Canada. We have observed that microorganisms indigenous to the tailings ponds accelerate consolidation of mature fine tailings (MFT) during active metabolism by using two biogeochemical pathways. In Pathway I, microbes alter porewater chemistry to indirectly increase consolidation of MFT. Here, we describe Pathway II comprising significant, direct and complementary biogeochemical reactions with MFT mineral surfaces. An anaerobic microbial community comprising Bacteria (predominantly Clostridiales, Synergistaceae, and Desulfobulbaceae) and Archaea (Methanolinea/Methanoregula and Methanosaeta) transformed Fe(III) minerals in MFT to amorphous Fe(II) minerals during methanogenic metabolism of an added organic substrate. Synchrotron analyses suggested that ferrihydrite (5Fe2O3. 9H2O) and goethite (α-FeOOH) were the dominant Fe(III) minerals in MFT. The formation of amorphous iron sulfide (FeS) and possibly green rust entrapped and masked electronegative clay surfaces in amended MFT. Both Pathways I and II reduced the surface charge potential (repulsive forces) of the clay particles in MFT, which aided aggregation of clays and formation of networks of pores, as visualized using cryo-scanning electron microscopy (SEM). These reactions facilitated the egress of porewater from MFT and increased consolidation of tailings solids. These results have large-scale implications for management and reclamation of oil sands tailings ponds, a burgeoning environmental issue for the public and government regulators.

Biogeochemistry of Arsenic in Groundwater Flow Systems: The Case of Southern Louisiana

Science.gov (United States)

Johannesson, K. H.; Yang, N.; Datta, S.

2017-12-01

Arsenic (As) is a highly toxic and carcinogenic metalloid that can cause serious health effects, including increased risk of cancers, infant mortality, and reduced intellectual and motor function in children to populations chronically exposed to As. Recent estimates suggest that more than 140 million people worldwide are drinking As-contaminated groundwater (i.e., As ≥ 10 µg kg-1), and the most severely affected region is the Ganges-Brahmaputra-Meghna delta in Bangladesh and India (i.e., Bengal Basin). Arsenic appears to be mobilized to Bengal Basin groundwaters by reductive dissolution of Fe oxides in aquifer sediments with the source of the labile organic matter occurring in the aquifer sediments. Studies within the lower Mississippi River delta of southern Louisiana (USA) also reveal high As concentrations (up to 640 µg kg-1) in shallow groundwaters. It is not known what affects, if any, the elevated groundwater As has had on local communities. The regional extent of high As shallow groundwaters is controlled, in part, by the distribution of Holocene sediments, deltaic deposits, and organic-rich sediments, similar to the Bengal Basin. Field and laboratory studies suggest that As is largely of geogenic origin, and further that microbial reduction of Fe(III)/Mn(IV) oxides/oxyhydroxides within the sediments contributes the bulk of the As to the groundwaters. Incubation studies are supported by biogeochemical reactive transport modeling, which also indicates reductive dissolution of metal oxides/oxyhydroxides as the likely source of As to these groundwaters. Finally, reactive transport modeling of As in shallow groundwaters suggests that sorption to aquifer mineral surfaces limits the transport of As after mobilization, which may explain, in part, the heterogeneous distribution of As in groundwaters of southern Louisiana and, perhaps, the Bengal Basin.

Decadal variability of Subtropical Mode Water subduction and its impact on biogeochemistry

Science.gov (United States)

Oka, E.; Qiu, B.; Takatani, Y.; Enyo, K.; Sasano, D.; Kosugi, N.; Ishii, M.; Nakano, T.; Suga, T.

2016-02-01

Temperature and salinity data from Argo profiling floats during 2005-2014 were analyzed to examine the decadal variability of the North Pacific Subtropical Mode Water (STMW) in relation to that of the Kuroshio Extension (KE) system. The formation volume of STMW in the southern recirculation gyre of KE in the cooling season was larger during the stable KE period after 2010 than the unstable KE period of 2006-2009 by 50%. As a result, the volume and spatial extent of STMW increased (decreased) in the formation region during the stable (unstable) KE period, as well as in the southern, downstream region with a time lag of 1-2 years. The decadal expansion and contraction of STMW were also detected by shipboard observations conducted routinely in the most downstream region near the western boundary, in terms of not only physical but also biogeochemical parameters. After 2010, enhanced subduction of STMW consistently increased dissolved oxygen, pH, and aragonite saturation state and decreased potential vorticity, apparent oxygen utilization, nitrate, and dissolved inorganic carbon, among which changes of dissolved inorganic carbon, pH, and aragonite saturation state were against their long-term trends. These results indicate a new mechanism consisting of westward sea surface height anomaly propagation, the KE state transition, and the STMW formation and subduction, by which the climate variability affects physical and biogeochemical structures in the ocean's interior and potentially impacts the surface ocean acidification trend and biological production.

The biogeochemistry of carbon in continental slope sediments: The North Carolina margin

Energy Technology Data Exchange (ETDEWEB)

Blair, N.; Levin, L.; DeMaster, D.; Plaia, G.; Martin, C.; Fornes, W.; Thomas, C.; Pope, R.

1999-12-01

The responses of the continental slope benthos to organic detritus deposition were studied with a multiple trace approach. Study sites were offshore of Cape Fear (I) and Cape Hatteras (III), N.C. (both 850 m water depth) and were characterized by different organic C deposition rates, macrofaunal densities (III>I in both cases) and taxa. Natural abundances of {sup 13}C and {sup 12}C in particulate organic carbon (POC), dissolved inorganic carbon (DIC) and macrofauna indicate that the reactive organic detritus is marine in origin. Natural abundance levels of {sup 14}C and uptake of {sup 13}C-labeled diatoms by benthic animals indicate that they incorporate a relatively young component of carbon into their biomass. {sup 13}C-labeled diatoms (Thalassiorsira pseudonana) tagged with {sup 210}Pb, slope sediment tagged with {sup 113}Sn and {sup 228}Th-labeled glass beads were emplaced in plots on the seafloor at both locations and the plots were sampled after 30 min., 1-1.5 d and 14 mo. At Site I, tracer diatom was intercepted at the surface primarily by protozoans and surface-feeding annelids. Little of the diatom C penetrated below 2 cm even after 14 months. Oxidation of organic carbon appeared to be largely aerobic. At Site III, annelids were primarily responsible for the initial uptake of tracer. On the time scale of days, diatom C was transported to a depth of 12 cm and was found in animals collected between 5-10 cm. The hoeing of tracer from the surface by the maldanid Praxillela sp. may have been responsible for some of the rapid nonlocal transport. Oxidation of the diatom organic carbon was evident to at least 10 cm depth. Anaerobic breakdown of organic matter is more important at Site III. Horizontal transport, which was probably biologically mediated, was an order of magnitude more rapid than vertical displacement over a year time scale. If the horizontal transport was associated with biochemical transformations of the organic matter, it may represent an important but nearly invisible diagenetic process.

Predictive isotopic biogeochemistry of lipids from the Black Sea and Cariaco Trench

International Nuclear Information System (INIS)

Freeman, K.H.; Hayes, J.M.; Wakeham, S.G.

1991-01-01

Carbon isotopic compositions of autotrophic organisms can be predicted based on recently established relationships between [CO 2 (aq)] and var-epsilon p , the isotopic fractionation accompanying carbon fixation. In both the Black Sea and the Cariaco Trench, where [CO 2 (aq)] values are known and δ values for hydrocarbons were recently determined, predicted biomass δ values can be compared to those of biomarkers extracted from POM and sediment samples. The agreement is good, although a 5 per-thousand range in δ values is observed for the lipids, which may be due to ecological factors or to contributions from organisms that assimilate HCO 3 -. Lycopane and pentamethyleicosane apparently derive from planktonic organisms. Diploptene in the Black Sea apparently is derived from chemoautotrophic bacteria living at the oxic/anoxic interface. Some odd-C, long-chain n-alkanes have planktonic δ values, and the authors suggest they are not strict terrestrial indicators

Water exchange in raised bogs: revised views especially in relation to biogeochemistry

Science.gov (United States)

Sirin, Andrey; Kravchenko, Irina; Yurova, Alla; Markina, Anastasiya

2017-04-01

Raised bogs are one of the most common and exciting mire type within the boreal zone and appear in the other zones including mountain regions in the tropics. They receive water and nutrients from the atmosphere and pore water stored in their domes is spaced above the surrounding area (up to 10 m in height). Traditionally it is assumed that water flow occurs mainly in a peat layer near to the surface and water transport is negligible in deeper layers (lvanov, 1981; Ingram, 1982; etc.). The «acrotelm/catotelm» paradigm on active and inert horizons for the peat above and below the lowest water level is still widely spread in peatland hydrology. However, recent studies have shown that deep water movement is much more dynamic in raised bogs than was previously thought (Sirin et al., 1997, Reeve et al., 2000; etc.). Relying on isotope studies we conclude that all the mounded strata of the raised bogs have relatively active water exchange although water residence time changes with depth. The study included two raised bogs, representing different typical hydrological conditions (underlain by outwash sands and moraine clay) at the Zapadnaya Dvina Peatland Field Station of the Institute of Forest Science RAS located 400 km west of Moscow (56 N, 32 E). Peatlands, among which raised bogs dominate, constitute > 30% of the area, and maximum peat thickness exceeds 7 m. To evaluate water residence time in peat strata specially determined mathematical model which include the equations of water mass and tritium balance, imbedded in a conceptual framework of water dynamics within a raised bog peat body, have been developed and tested. The results from isotope studies (3H, 18O, 2H) were additionally supported by geochemical (pH, Eh, electrical conductivity) and temperature long term monitoring, as well as dissolved CO2 and CH4 monitoring within vertical profiles of the studied raised bogs (Sirin et al., 1998). Later it was also supported by microbiology data of methane cycle in the profile of peat bogs (Kravchenko, Sirin, 2007). The obtained results confirm that the hydrological stratification of peat bogs is a more complicated picture than previously thought and need to be considered.

Low-Light Anoxygenic Photosynthesis and Fe-S-Biogeochemistry in a Microbial Mat

Directory of Open Access Journals (Sweden)

Sebastian Haas

2018-04-01

Full Text Available We report extremely low-light-adapted anoxygenic photosynthesis in a thick microbial mat in Magical Blue Hole, Abaco Island, The Bahamas. Sulfur cycling was reduced by iron oxides and organic carbon limitation. The mat grows below the halocline/oxycline at 30 m depth on the walls of the flooded sinkhole. In situ irradiance at the mat surface on a sunny December day was between 0.021 and 0.084 μmol photons m-2 s-1, and UV light (<400 nm was the most abundant part of the spectrum followed by green wavelengths (475–530 nm. We measured a light-dependent carbon uptake rate of 14.5 nmol C cm-2 d-1. A 16S rRNA clone library of the green surface mat layer was dominated (74% by a cluster (>97% sequence identity of clones affiliated with Prosthecochloris, a genus within the green sulfur bacteria (GSB, which are obligate anoxygenic phototrophs. Typical photopigments of brown-colored GSB, bacteriochlorophyll e and (β-isorenieratene, were abundant in mat samples and their absorption properties are well-adapted to harvest light in the available green and possibly even UV-A spectra. Sulfide from the water column (3–6 μmol L-1 was the main source of sulfide to the mat as sulfate reduction rates in the mats were very low (undetectable-99.2 nmol cm-3 d-1. The anoxic water column was oligotrophic and low in dissolved organic carbon (175–228 μmol L-1. High concentrations of pyrite (FeS2; 1–47 μmol cm-3 together with low microbial process rates (sulfate reduction, CO2 fixation indicate that the mats function as net sulfide sinks mainly by abiotic processes. We suggest that abundant Fe(III (4.3–22.2 μmol cm-3 is the major source of oxidizing power in the mat, and that abiotic Fe-S-reactions play the main role in pyrite formation. Limitation of sulfate reduction by low organic carbon availability along with the presence of abundant sulfide-scavenging iron oxides considerably slowed down sulfur cycling in these mats.

Low-Light Anoxygenic Photosynthesis and Fe-S-Biogeochemistry in a Microbial Mat.

Science.gov (United States)

Haas, Sebastian; de Beer, Dirk; Klatt, Judith M; Fink, Artur; Rench, Rebecca McCauley; Hamilton, Trinity L; Meyer, Volker; Kakuk, Brian; Macalady, Jennifer L

2018-01-01

We report extremely low-light-adapted anoxygenic photosynthesis in a thick microbial mat in Magical Blue Hole, Abaco Island, The Bahamas. Sulfur cycling was reduced by iron oxides and organic carbon limitation. The mat grows below the halocline/oxycline at 30 m depth on the walls of the flooded sinkhole. In situ irradiance at the mat surface on a sunny December day was between 0.021 and 0.084 μmol photons m -2 s -1 , and UV light (97% sequence identity) of clones affiliated with Prosthecochloris , a genus within the green sulfur bacteria (GSB), which are obligate anoxygenic phototrophs. Typical photopigments of brown-colored GSB, bacteriochlorophyll e and (β-)isorenieratene, were abundant in mat samples and their absorption properties are well-adapted to harvest light in the available green and possibly even UV-A spectra. Sulfide from the water column (3-6 μmol L -1 ) was the main source of sulfide to the mat as sulfate reduction rates in the mats were very low (undetectable-99.2 nmol cm -3 d -1 ). The anoxic water column was oligotrophic and low in dissolved organic carbon (175-228 μmol L -1 ). High concentrations of pyrite (FeS 2 ; 1-47 μmol cm -3 ) together with low microbial process rates (sulfate reduction, CO 2 fixation) indicate that the mats function as net sulfide sinks mainly by abiotic processes. We suggest that abundant Fe(III) (4.3-22.2 μmol cm -3 ) is the major source of oxidizing power in the mat, and that abiotic Fe-S-reactions play the main role in pyrite formation. Limitation of sulfate reduction by low organic carbon availability along with the presence of abundant sulfide-scavenging iron oxides considerably slowed down sulfur cycling in these mats.

EAG Eminent Speaker: Cold war biogeochemistry: Microbes as architects for metal attenuation

Science.gov (United States)

Küsel, K.

2012-04-01

Legacy uranium mining in the area of Ronneburg, Germany, has resulted in extensive outflow of highly heavy metal contaminated ground and upcoming mine waters. Mine water flows along a grassland into a small creek and forms iron-rich precipitates yielding rust-colored terraces at the creek bank. These iron oxyhydroxides could have been formed by iron oxidizing bacteria (FeOB) or by chemical oxidation. Precipitates may serve as important biogeochemical interfaces, because heavy metals can adsorb or co-precipitate with Fe(II) or Fe(III) minerals. Thus, microbial Fe(II) oxidation but also the reductive dissolution of iron oxides can be important processes affecting the stability of metal contaminants. Here we present a study on the potential for iron cycling processes and on indigenous bacterial communities in this acidic creek. Oxic and anoxic in vitro sediment incubations revealed iron oxidation and reduction rates of same magnitude, indicating active iron cycling regardless of pH. XRD and TEM comparing the suspended particle load of water samples with fresh creek sediment showed that amorphous particles likely formed first, then aged to become more crystalline iron oxyhydroxides, such as akaganeite and goethite. During this aging process some of the initially smooth, 50-300 nm spherical particles may have formed nano-sized needles, which could potentially provide high reactive surface area for chemical and biological reactions. Surprisingly, total and dissolved metal concentrations in creek water and sediment revealed that elements such as Mn, Si, Ni, or Zn stayed mostly in solution. Only some metals such as Cu, Cr, and U seemed to be particle-associated in the water, likely co-precipitated with or adsorbed onto freshly-precipitating minerals. Pelagic and particle-associated organisms from water as well as fresh sediments were used for 16S rRNA gene cloning and sequencing and showed that members of the Proteobacteria (mainly Betaproteobacteria and Deltaproteobacteria) dominated bacterial communities. The relative fraction of FeOB-related clones was especially high in upcoming underground water and sediment of the adjacent creek site. Up to 80% of clones in sediment microbial 16S rRNA gene clone libraries had ≥97% sequence similarity to reported FeOM or FeRM, demonstrating a strong link to function, even on RNA level. Three novel moderately acidophilic FeOM strains, Thiomonas sp. FB-Cd and FB-6 and Bordetella sp. FB-8, were isolated from pH 6.3 sediment. FB-6 is likely involved in in situ iron oxidation as it has high similarity to a RNA-derived clone from this sediment. Our results demonstrated active microbial iron cycling in heavy metal contaminated creeks, which have important implications for understanding natural attenuation.

Differences and implications in biogeochemistry from maximizing entropy production locally versus globally

Directory of Open Access Journals (Sweden)

J. J. Vallino

2011-06-01

Full Text Available In this manuscript we investigate the use of the maximum entropy production (MEP principle for modeling biogeochemical processes that are catalyzed by living systems. Because of novelties introduced by the MEP approach, many questions need to be answered and techniques developed in the application of MEP to describe biological systems that are responsible for energy and mass transformations on a planetary scale. In previous work we introduce the importance of integrating entropy production over time to distinguish abiotic from biotic processes under transient conditions. Here we investigate the ramifications of modeling biological systems involving one or more spatial dimensions. When modeling systems over space, entropy production can be maximized either locally at each point in space asynchronously or globally over the system domain synchronously. We use a simple two-box model inspired by two-layer ocean models to illustrate the differences in local versus global entropy maximization. Synthesis and oxidation of biological structure is modeled using two autocatalytic reactions that account for changes in community kinetics using a single parameter each. Our results show that entropy production can be increased if maximized over the system domain rather than locally, which has important implications regarding how biological systems organize and supports the hypothesis for multiple levels of selection and cooperation in biology for the dissipation of free energy.

Brachiopod biogeochemistry and isotope stratigraphy from the Rhaetian Eiberg section in Austria

DEFF Research Database (Denmark)

Korte, Christoph; Thibault, Nicolas Rudolph; Ullmann, Clemens Vinzenz

2017-01-01

The end-Triassic is characterized by one of the most severe biotic crises of the entire Phanerozoic, with strong carbon cycle perturbations potentially predating the biotic event. In order to improve and test the chemostratigraphic framework for the Rhaetian Stage, which culminated in the end......-Triassic extinction, a total of 675 and 108 carbonate δ13C and δ18O values have been measured from bulk rock carbonate and articulate brachiopod samples from the Rhaetian Eiberg quarry succession (Northern Calcareous Alps, Austria) respectively. Both brachiopod and bulk rock oxygen isotope trends are compatible...... the calcite composing the bulk rock micrite. Significant metabolic disequilibrium effects on brachiopod carbon isotope ratios are suggested by a clear negative correlation between δ13C values and Sr/Ca ratios of the samples. Consequently, chemostratigraphy based on brachiopod Δ13C data, especially with regard...

Linking Hydrology and Biogeochemistry to assess the impact of Lateral Nutrient Fluxes

NARCIS (Netherlands)

Rebel, K.T.; Osch, F. van; McGuire, K.J.; Rastetter, E.B.; Wassen, M.J.

2010-01-01

Until recently, it has been challenging to couple hydrological and biogeochemical processes at the watershed scale. We have coupled two models, WTB and MEL, to simulate lateral water and nutrient fluxes and their influence on ecosystem functioning. WTB is a spatially explicit water balance model.

Pressures on the marine environment and the changing climate of ocean biogeochemistry.

Science.gov (United States)

Rees, Andrew P

2012-12-13

The oceans are under pressure from human activities. Following 250 years of industrial activity, effects are being seen at the cellular through to regional and global scales. The change in atmospheric CO(2) from 280 ppm in pre-industrial times to 392 ppm in 2011 has contributed to the warming of the upper 700 m of the ocean by approximately 0.1°C between 1961 and 2003, to changes in sea water chemistry, which include a pH decrease of approximately 0.1, and to significant decreases in the sea water oxygen content. In parallel with these changes, the human population has been introducing an ever-increasing level of nutrients into coastal waters, which leads to eutrophication, and by 2008 had resulted in 245,000 km(2) of severely oxygen-depleted waters throughout the world. These changes are set to continue for the foreseeable future, with atmospheric CO(2) predicted to reach 430 ppm by 2030 and 750 ppm by 2100. The cycling of biogeochemical elements has proved sensitive to each of these effects, and it is proposed that synergy between stressors may compound this further. The challenge, within the next few decades, for the marine science community, is to elucidate the scope and extent that biological processes can adapt or acclimatize to a changing chemical and physical marine environment.

Biogeochemistry and biodiversity of methane cycling in subsurface marine sediments (Skagerrak, Denmark)

DEFF Research Database (Denmark)

Parkes, R.John; Cragg, Barry A.; Banning, Natasha

2007-01-01

-depleted archaeol (δ13C -55‰). Pore water acetate concentrations decreased in this zone (to 5 μM), suggesting that H2, not acetate, was an important CH4 cycling intermediate. The potential biomarkers for AOM-associated SRB, non-isoprenoidal ether lipids, increased below the SMTZ but this distribution reflected 16S...

Calibration of a simple and a complex model of global marine biogeochemistry

Science.gov (United States)

Kriest, Iris

2017-11-01

The assessment of the ocean biota's role in climate change is often carried out with global biogeochemical ocean models that contain many components and involve a high level of parametric uncertainty. Because many data that relate to tracers included in a model are only sparsely observed, assessment of model skill is often restricted to tracers that can be easily measured and assembled. Examination of the models' fit to climatologies of inorganic tracers, after the models have been spun up to steady state, is a common but computationally expensive procedure to assess model performance and reliability. Using new tools that have become available for global model assessment and calibration in steady state, this paper examines two different model types - a complex seven-component model (MOPS) and a very simple four-component model (RetroMOPS) - for their fit to dissolved quantities. Before comparing the models, a subset of their biogeochemical parameters has been optimised against annual-mean nutrients and oxygen. Both model types fit the observations almost equally well. The simple model contains only two nutrients: oxygen and dissolved organic phosphorus (DOP). Its misfit and large-scale tracer distributions are sensitive to the parameterisation of DOP production and decay. The spatio-temporal decoupling of nitrogen and oxygen, and processes involved in their uptake and release, renders oxygen and nitrate valuable tracers for model calibration. In addition, the non-conservative nature of these tracers (with respect to their upper boundary condition) introduces the global bias (fixed nitrogen and oxygen inventory) as a useful additional constraint on model parameters. Dissolved organic phosphorus at the surface behaves antagonistically to phosphate, and suggests that observations of this tracer - although difficult to measure - may be an important asset for model calibration.

Particulate uranium, plutonium and polonium in the biogeochemistries of the coastal zone

Energy Technology Data Exchange (ETDEWEB)

Hodge, V F; Koide, M; Goldberg, E D [Scripps Institution of Oceanography, La Jolla, CA (USA)

1979-01-18

It is stated that although increasing attention has been paid to the role of inorganic solid phases in the chemistry of seawater, little quantitative data has been available to assess their involvement with living systems. Recent observations are here reported on the uptake of uranium, plutonium and polonium in coastal waters by organisms and submerged surfaces as traced by their isotopes. It is shown that the body burdens of these radioelements in some marine organisms are governed measurably by the uptake of their particulate forms. Furthermore, these elements are associated with different particulate phases, as deduced from the rates at which they deposit on submerged surfaces.

Current understanding of Phaeocystis ecology and biogeochemistry and perspectives for future research

NARCIS (Netherlands)

Verity, Peter G.; Brussaard, Corina P.; Nejstgaard, Jens C.; van Leeuwe, Maria A.; Lancelot, Christiane; Medlin, Linda K.

The phytoplankton genus Phaeocystis has well-documented, spatially and temporally extensive blooms of gelatinous colonies; these are associated with release of copious amounts of dimethyl sulphide (an important climate-cooling aerosol) and alterations of material flows among trophic levels and

Diversity, ecology and biogeochemistry of cyst-forming acantharia (radiolaria in the oceans.

Directory of Open Access Journals (Sweden)

Johan Decelle

Full Text Available Marine planktonic organisms that undertake active vertical migrations over their life cycle are important contributors to downward particle flux in the oceans. Acantharia, globally distributed heterotrophic protists that are unique in building skeletons of celestite (strontium sulfate, can produce reproductive cysts covered by a heavy mineral shell that sink rapidly from surface to deep waters. We combined phylogenetic and biogeochemical analyses to explore the ecological and biogeochemical significance of this reproductive strategy. Phylogenetic analysis of the 18S and 28S rRNA genes of different cyst morphotypes collected in different oceans indicated that cyst-forming Acantharia belong to three early diverging and essentially non symbiotic clades from the orders Chaunacanthida and Holacanthida. Environmental high-throughput V9 tag sequences and clone libraries of the 18S rRNA showed that the three clades are widely distributed in the Indian, Atlantic and Pacific Oceans at different latitudes, but appear prominent in regions of higher primary productivity. Moreover, sequences of cyst-forming Acantharia were distributed evenly in both the photic and mesopelagic zone, a vertical distribution that we attribute to their life cycle where flagellated swarmers are released in deep waters from sinking cysts. Bathypelagic sediment traps in the subantarctic and oligotrophic subtropical Atlantic Ocean showed that downward flux of Acantharia was only large at high-latitudes and during a phytoplankton bloom. Their contribution to the total monthly particulate organic matter flux can represent up to 3%. High organic carbon export in cold waters would be a putative nutritional source for juveniles ascending in the water column. This study improves our understanding of the life cycle and biogeochemical contribution of Acantharia, and brings new insights into a remarkable reproductive strategy in marine protists.

Flow cytometric detection of viruses in the Zuari estuary, Goa

Digital Repository Service at National Institute of Oceanography (India)

Mitbavkar, S.; Rajaneesh, K.M.; SathishKumar, P.

and virus-mediated processes for better understanding of the microbial food web and the biogeochemistry. 1. Suttle, C. A., Nature, 2005, 437, 356– 361. 2. Danovaro, R. et al., Freshwater Biol., 2008, 53, 1186–1213. 3. Suttle, C. A., Nature, 2007, 5... of the microbial food web, with abundance in marine waters ranging from 10 6 ml –1 in the deep sea to 10 8 ml –1 in coastal waters and 10 9 g –1 of dry weight in the marine sediments 1,2 , which is usually 15-fold greater than bacterial and archael...

Planetary Biology and Microbial Ecology: Molecular Ecology and the Global Nitrogen cycle

Science.gov (United States)

Nealson, Molly Stone (Editor); Nealson, Kenneth H. (Editor)

1993-01-01

This report summarizes the results of the Planetary Biology and Molecular Ecology's summer 1991 program, which was held at the Marine Biological Laboratory in Woods Hole, Massachusetts. The purpose of the interdisciplinary PBME program is to integrate, via lectures and laboratory work, the contributions of university and NASA scientists and student interns. The goals of the 1991 program were to examine several aspects of the biogeochemistry of the nitrogen cycle and to teach the application of modern methods of molecular genetics to field studies of organisms. Descriptions of the laboratory projects and protocols and abstracts and references of the lectures are presented.

A generalized model for the air-sea transfer of dimethyl sulfide at high wind speeds

Science.gov (United States)

Vlahos, Penny; Monahan, Edward C.

2009-11-01

The air-sea exchange of dimethyl sulfide (DMS) is an important component of ocean biogeochemistry and global climate models. Both laboratory experiments and field measurements of DMS transfer rates have shown that the air-sea flux of DMS is analogous to that of other significant greenhouse gases such as CO2 at low wind speeds (10 m/s. The result is an attenuation of the dimensionless Henry's Law constant (H) where (Heff = H/(1 + (Cmix/Cw) ΦB) by a solubility enhancement Cmix/Cw, and the fraction of bubble surface area per m2 surface ocean.

Phytozome Comparative Plant Genomics Portal

Energy Technology Data Exchange (ETDEWEB)

Goodstein, David; Batra, Sajeev; Carlson, Joseph; Hayes, Richard; Phillips, Jeremy; Shu, Shengqiang; Schmutz, Jeremy; Rokhsar, Daniel

2014-09-09

The Dept. of Energy Joint Genome Institute is a genomics user facility supporting DOE mission science in the areas of Bioenergy, Carbon Cycling, and Biogeochemistry. The Plant Program at the JGI applies genomic, analytical, computational and informatics platforms and methods to: 1. Understand and accelerate the improvement (domestication) of bioenergy crops 2. Characterize and moderate plant response to climate change 3. Use comparative genomics to identify constrained elements and infer gene function 4. Build high quality genomic resource platforms of JGI Plant Flagship genomes for functional and experimental work 5. Expand functional genomic resources for Plant Flagship genomes

A Cryptic Sulfur Cycle in Oxygen-Minimum-Zone Waters off the Chilean Coast

Science.gov (United States)

Canfield, Don E.; Stewart, Frank J.; Thamdrup, Bo; De Brabandere, Loreto; Dalsgaard, Tage; Delong, Edward F.; Revsbech, Niels Peter; Ulloa, Osvaldo

2010-12-01

Nitrogen cycling is normally thought to dominate the biogeochemistry and microbial ecology of oxygen-minimum zones in marine environments. Through a combination of molecular techniques and process rate measurements, we showed that both sulfate reduction and sulfide oxidation contribute to energy flux and elemental cycling in oxygen-free waters off the coast of northern Chile. These processes may have been overlooked because in nature, the sulfide produced by sulfate reduction immediately oxidizes back to sulfate. This cryptic sulfur cycle is linked to anammox and other nitrogen cycling processes, suggesting that it may influence biogeochemical cycling in the global ocean.

Puerto Rico [Marine Radioecology. Current Research and Future Scope

International Nuclear Information System (INIS)

Lowman, Frank G.

1967-01-01

Present research programme: Marine biology programme (marine biogeochemistry). The programme is designed to provide measurements of the distribution and movements of selected trace elements in a restricted but complete ecological and biogeochemical system. To obtain information on interactions between the marine biosphere and hydrosphere, measurements are being made of biological productivity, amounts of trace elements in the organisms and the environment, biological half-lives of trace elements, characteristics of food webs, and the influence of physical and chemical oceanographic factors upon the distribution patterns of trace elements in the marine waters, organisms and sediments offshore from the west coast of Puerto Rico

Extracellular Electron Transport Coupling Biogeochemical Processes Centimeters

DEFF Research Database (Denmark)

Risgaard-Petersen, Nils; Fossing, Henrik; Christensen, Peter Bondo

2010-01-01

of the oxygen uptake in laboratory incubations of initially homogenized and stabilized sediment. Using microsensors and process rate measurements we further investigated the effect of the electric currents on sediment biogeochemistry. Dissolved sulfide readily donated electrons to the networks and could...... confirmed the depth range of the electric communication and indicated donation of electrons directly from organotrophic bacteria. The separation of oxidation and reduction processes created steep pH gradients eventually causing carbonate precipitation at the surface. The results indicate that electron...... exchanging organisms have major biogeochemical importance as they allow widely separated electron donors and acceptors to react with one another....

Species-specific isotopic fractionation of mercury during methylation by bacteria

International Nuclear Information System (INIS)

Rodriguez-Gonzalez, P.; Epov, V.N.; Bridou, R.; Tessier, E.; Monperrus, M.; Guyoneaud, R.; Amouroux, D.

2009-01-01

Full text: The environmental reactivity of Hg is extremely dependent on its chemical form. In fact, Hg bioaccumulation is due to the greater trophic transfer efficiency of methylmercury which is formed as a result of biotic or abiotic transformations caused by specific redox gradients and bacterial activity. The study of stable isotope biogeochemistry of Hg may provide a powerful tool to track and understand its cycle and pathways in the environment. This work presents the measurement of species-specific Hg isotopic composition by GC-MCICPMS during Hg methylation experiments using cultures of pure bacterial strains incubated with Hg (II) standard NIST 3133. (author)

Biostimulation

Energy Technology Data Exchange (ETDEWEB)

Hazen, Terry C.

2009-03-01

Biostimulation is one of the most mature methods of bioremediation of hydrocarbons, yet recent advances in geophysics, stable isotope analyses, and molecular microbiology promise dramatic increases in the depth, breadth, and throughput of biostimulation strategies. Using a systems biology approach we can now understand not only what microbes are present, but their in situ activities to trace nutrients, electron donors, electron acceptors, contaminants, and environmental stressors. Using this knowledge in combination with critical biogeochemistry, hydrology, geology, and toxicology will be enabling to develop conceptual and numerical models for the best biostimulation strategy and better long-term stewardship of the environment.

BOREAS TGB-3 Plant Species Composition Data over the NSA Fen

Science.gov (United States)

Bubier, Jill L.; Hall, Forrest G. (Editor); Conrad, Sara K. (Editor)

2000-01-01

The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-3) team collected several data sets that contributed to understanding the measured trace gas fluxes over sites in the Northern Study Area (NSA). This data set contains information about the composition of plant species that were within the collars used to measure Net Ecosystem Exchange of CO2 (NEE). The species composition was identified to understand the differences in NEE among the various plant communities in the NSA fen. The data were collected in July of 1994 and 1996. The data are contained in comma-delimited, ASCII files.

BOREAS TGB-5 Dissolved Organic Carbon Data from NSA Beaver Ponds

Science.gov (United States)

Bourbonniere, Rick; Hall, Forrest G. (Editor); Conrad, Sara K. (Editor)

2000-01-01

The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-5) team collected several data sets related to carbon and trace gas fluxes and concentrations in the Northern Study Area (NSA). This data set contains concentrations of dissolved organic and inorganic carbon species from water samples collected at various NSA sites. In particular, this set covers the NSA Tower Beaver Pond Site and the NSA Gillam Road Beaver Pond Site, including data from all visits to open water sampling locations during the BOREAS field campaigns from April to September 1994. The data are provided in tabular ASCII files.

An overview of the Chemistry-Aerosol Mediterranean Experiment (ChArMEx)

Science.gov (United States)

Dulac, François

2014-05-01

The Chemistry-Aerosol Mediterranean Experiment (ChArMEx, http://charmex.lsce.ipsl.fr) is a French initiative of the MISTRALS meta-programme (Mediterranean Integrated Studies at Regional And Locals Scales, http://www.mistrals-home.org). It federates a great number of national and international cooperative research actions aiming at a scientific assessment of the present and future state of the atmospheric environment in the Mediterranean Basin, and of its impacts on the regional climate, air quality, and marine biogeochemistry. The target is short-lived particulate and gaseous tropospheric trace species which are the cause of poor air quality events, have two-way interactions with climate, or impact the marine biogeochemistry, in a context of strong regional anthropogenic and climatic pressures. The six ChArMEx work packages include Emissions, Chemical processes and ageing, Transport processes and air quality, Aerosol-radiation-climate interactions, Deposition, and Present and future variability and trends. For several years, efforts have been deployed in several countries to develop (i) a network of relevant stations for atmospheric chemistry at background sites on islands and continental coasts around the basin and (ii) several intensive field campaigns including the operation of surface supersites and various instrumented mobile platforms (large and ultra-light aircraft, sounding and drifting balloons, ZeroCO2 sailboat). This presentation is an attempt to provide an overview of the various experimental, remote sensing and modelling efforts produced and to highlight major findings, by referencing more detailed ChArMEx presentations given in this conference and recently published or submitted papers. During the first phase of the project experimental efforts have been mainly concentrated on the western basin. Plans for the 2nd phase of ChArMEx, more dedicated towards the eastern basin, will also be given. In particular we plan to develop monitoring activities at

Overview and preliminary results of the Surface Ocean Aerosol Production (SOAP campaign

Directory of Open Access Journals (Sweden)

C. S. Law

2017-11-01

Full Text Available Establishing the relationship between marine boundary layer (MBL aerosols and surface water biogeochemistry is required to understand aerosol and cloud production processes over the remote ocean and represent them more accurately in earth system models and global climate projections. This was addressed by the SOAP (Surface Ocean Aerosol Production campaign, which examined air–sea interaction over biologically productive frontal waters east of New Zealand. This overview details the objectives, regional context, sampling strategy and provisional findings of a pilot study, PreSOAP, in austral summer 2011 and the following SOAP voyage in late austral summer 2012. Both voyages characterized surface water and MBL composition in three phytoplankton blooms of differing species composition and biogeochemistry, with significant regional correlation observed between chlorophyll a and DMSsw. Surface seawater dimethylsulfide (DMSsw and associated air–sea DMS flux showed spatial variation during the SOAP voyage, with maxima of 25 nmol L−1 and 100 µmol m−2 d−1, respectively, recorded in a dinoflagellate bloom. Inclusion of SOAP data in a regional DMSsw compilation indicates that the current climatological mean is an underestimate for this region of the southwest Pacific. Estimation of the DMS gas transfer velocity (kDMS by independent techniques of eddy covariance and gradient flux showed good agreement, although both exhibited periodic deviations from model estimates. Flux anomalies were related to surface warming and sea surface microlayer enrichment and also reflected the heterogeneous distribution of DMSsw and the associated flux footprint. Other aerosol precursors measured included the halides and various volatile organic carbon compounds, with first measurements of the short-lived gases glyoxal and methylglyoxal in pristine Southern Ocean marine air indicating an unidentified local source. The application of a real-time clean sector

Nonlinear and threshold-dominated runoff generation controls DOC export in a small peat catchment

Science.gov (United States)

Birkel, C.; Broder, T.; Biester, H.

2017-03-01

We used a relatively simple two-layer, coupled hydrology-biogeochemistry model to simultaneously simulate streamflow and stream dissolved organic carbon (DOC) concentrations in a small lead and arsenic contaminated upland peat catchment in northwestern Germany. The model procedure was informed by an initial data mining analysis, in combination with regression relationships of discharge, DOC, and element export. We assessed the internal model DOC processing based on stream DOC hysteresis patterns and 3-hourly time step groundwater level and soil DOC data for two consecutive summer periods in 2013 and 2014. The parsimonious model (i.e., few calibrated parameters) showed the importance of nonlinear and rapid near-surface runoff generation mechanisms that caused around 60% of simulated DOC load. The total load was high even though these pathways were only activated during storm events on average 30% of the monitoring time—as also shown by the experimental data. Overall, the drier period 2013 resulted in increased nonlinearity but exported less DOC (115 kg C ha-1 yr-1 ± 11 kg C ha-1 yr-1) compared to the equivalent but wetter period in 2014 (189 kg C ha-1 yr-1 ± 38 kg C ha-1 yr-1). The exceedance of a critical water table threshold (-10 cm) triggered a rapid near-surface runoff response with associated higher DOC transport connecting all available DOC pools and subsequent dilution. We conclude that the combination of detailed experimental work with relatively simple, coupled hydrology-biogeochemistry models not only allowed the model to be internally constrained but also provided important insight into how DOC and tightly coupled pollutants or trace elements are mobilized.

Health impacts of mercury cycling in contaminated environments in China studied by nuclear techniques

International Nuclear Information System (INIS)

Wang Dingyong; Qing Changle; Shi Xiaojun; Zheng Yonghua; Li Bo; Yang Xuechun

2001-01-01

Mercury is a highly toxic non-essential element. The mercury cycling in natural environments is a complex process. In recent years, the stable mercury isotope tracer and related analytical techniques have been developed. They offer unique possibility to understand the biogeochemistry of mercury in various environmental conditions. So a new co-ordinated research project (CRP) on health impacts of mercury cycling in contaminated environments studied by nuclear techniques has been supported by the IAEA. This paper introduces the research project whose IAEA research contract number is CPR-10874. It includes the scientific background, scope of the project, methods, some results related to this CRP and the plans for future work. (author)

Numerical modelling of the atmospheric transport, chemical tranformations and deposition of mercury

Energy Technology Data Exchange (ETDEWEB)

Petersen, G; Schneider, B; Eppel, D [GKSS-Forschungszentrum Geesthacht GmbH, Geesthacht-Tesperhude (Germany, F.R.). Inst. fuer Physik; Grassl, H [Hamburg Univ. (Germany, F.R.). Meteorologisches Inst. Max-Planck-Institut fuer Meteorologie, Hamburg (Germany, F.R.); Iverfeldt, A [Swedish Environmental Research Inst., Goeteborg (Sweden); Misra, P K; Bloxam, R; Wong, S [Ontario Ministry of the

1990-01-01

Based on recent progress in the understanding of mercury chemistry and biogeochemistry and on the availability of mercury emission data bases this study makes an attempt to model the atmospheric transport of mercury, its chemical transformations in the atmosphere, and the fluxes of mercury to and from the earth's surface by means of an EMEP-type Lagrangian trajectory model for Europe and an Eulerian grid model (ADOM) for North America. Preliminary results with a simplified mercury chemistry scheme in the comprehensive Eulerian model and with a linear chemistry in the Lagrangian model show reasonable agreement with observed mercury concentrations in air and precipitation. (orig.) With 3 figs., 4 tabs.

Alquimia

Energy Technology Data Exchange (ETDEWEB)

2013-08-01

The goal of alquimia is to provide a generic interface between flow and transport simulators and biogeochemical reaction simulations. Alquimia consists of two parts: documentation of an application programming interface, API, and a reference software implementation. The API documents describe in detail how information is exchanged between the transport simulator and the gochemistry library. This includes the function call signatures and data structures required for implementing alquimia in a mixed language (C/C++/Fortran) programing environment. The alquimia library is reference implementation of the document API, providing an interface into the biogeochemistry routines supplied by the open source (LGPL) PFLOTRAN Account Number I13-119

The Blue Dot Workshop: Spectroscopic Search for Life on Extrasolar Planets

Science.gov (United States)

Des Marais, David J. (Editor)

1997-01-01

This workshop explored the key questions and challenges associated with detecting life on an extrasolar planet. The final product will be a NASA Conference Publication which includes the abstracts from 21 talks, summaries of key findings, and recommendations for future research. The workshop included sessions on three related topics: the biogeochemistry of biogenic gases in the atmosphere, the chemistry and spectroscopy of planetary atmospheres, and the remote sensing of planetary atmospheres and surfaces. With the observation that planetary formation is probably a common phenomenon, together with the advent of the technical capability to locate and describe extrasolar planets, this research area indeed has an exciting future.

Health impacts of mercury cycling in contaminated environments in China studied by nuclear techniques

International Nuclear Information System (INIS)

Wang Dingyong; Shi Xiaojun; Wei Shiqiang; Zheng Yonghua; Qing Changle

2002-01-01

Mercury is a highly toxic non-essential element. The mercury cycling in natural environments is a complex process. In recent years, the stable mercury isotope tracer and related analytical techniques have been developed. They offer unique possibility to understand the biogeochemistry of mercury in various environmental conditions. So a new coordinated research project (CRP), on health impacts of mercury cycling in contaminated environments studied by nuclear techniques, has been supported by the IAEA. This paper introduces the research project which is IAEA research contract number CPR-10874. It includes the scientific background, scope of the project, methods, some results related to this CRP and the plans for future work. (author)

Biogeochemistry of Nitrous Oxide Production in the Red Mangrove ( Rhizophora mangle) Forest Sediments

Science.gov (United States)

Bauza, J. F.; Morell, J. M.; Corredor, J. E.

2002-11-01

This study was undertaken to quantify the emission and distribution of nitrous oxide and to explore its relation to pertinent physical and chemical parameters in a red mangrove forest located at Magueyes island, Puerto Rico. Rates of N2O evolution, which ranged from 0·05 to 1·4 μmole m-2 h-1 (overall mean=0·50 μmole m-2 h-1), are comparable to those of other previously studied ecosystems. A significant diel cycle of N2O emission was observed. Dissolved N2O concentration averaged 0·15 nmole cm-3 (SD=0·09, n=54) with a range of 0·1 to 0·57 nmole cm-3. Dissolved and exchangeable inorganic nitrogen was present mostly in the form of ammonium (overall mean=212·2 nmole cm-3) with lesser amounts of nitrate (overall mean=29·0 nmole cm-3). Redox potentials in the sediments generally decreased with depth, with a mean value of 377 mV at the sediment surfaces and lower mean value (159 mV) at 10 cm. We have explored the probable sources of N2O in the mangrove forest sediment using correlation analysis between the data obtained in this study and comparing these observations with previous studies of N2O metabolism. Our results, while not excluding the possibility of N2O production through denitrification, indicate that N2O is produced mainly by nitrification in sediments of this mangrove forest.

Seasonally varying nitrogen isotope biogeochemistry of particulate organic matter in Lake Kinneret, Israel

Digital Repository Service at National Institute of Oceanography (India)

Hadas, O.; Altabet, M.A.; Agnihotri, R.

, by seasonally dominant NH sup(+) sub(4) oxidizers. Nitrification itself was strongly fractionating, producing sup(15) N-depleted NO sup(-) sub(3) and strongly enriching water-column NH sup(+) sub(4) in sup(15) N. Toward the end of nitrification...

Biogeochemistry of Lakes in Western Papua, Indonesia - First Results of a Pilot Study.

Science.gov (United States)

Kallmeyer, J.; Nomosatryo, S.; Henny, C.; Kopalit, H.

2016-12-01

Despite years of exploration for mineral and hydrocarbon resources, the lakes of Western Papua have received very little attention from a limnogeologic perspective. In some cases not even the maximum water depth of the lakes is published. The only research carried out so far focused on the fish and invertebrate fauna of the lakes, because the macrofauna of Papuan Lakes is significantly different from other islands of western Indonesia. Most lakes harbor numerous endemic species. We carried out a first limnogeologic pilot campaign in spring 2016 to measure water column profiles and take short (max 80 cm long) sediment cores.Lake Sentani is seated in Mesozoic mafic bedrock and consists of four separate basins with maximum water depths of 30 to 40 m. Three basins are connected by shallow sills and one by a natural canal. Although all four basins share almost identical surface water chemistry and exhibit sub- to anoxic bottom waters, each basin has its distinct water column stratification and sediment geochemistry. Despite its coastal location and minimal elevation we could not identify an influx of seawater into the lake. Lake Ayamaru is located further inland on a densely forested karstified carbonate platform. The lake level has dropped significantly in recent years due to water loss into the karst, further reduction of open water surface is caused by massive growth of Pistia. Currently the lake has a maximum depth of around 2 m. Its sediment is mainly composed of carbonate minerals and methane saturated. Due to the carbonate bedrock the lake is highly alkaline (up to 20 meq/L) despite its very low salinity. The initial analyses show that these lakes offer unique biogeochemical conditions that require further in-depth studies.Our research will expand to lakes Anggi Giji and Anggi Gida, which are at almost 2000 m elevation. They have maximum depths of around 200 m and much colder surface waters (12-20°C) compared to the other two lakes that have about 30°C throughout the year.

Biogeochemistry of lead in the eastern Arabian Sea and western Bay of Bengal

Digital Repository Service at National Institute of Oceanography (India)

Rejomon, G.; DineshKumar, P.K.; Bahulayan, N.

) and mercury (Hg) is a matter of serious con- cern throughout the world oceans due to their long biological half lives, non bio-degradable nature, and bioaccumulative prop- erties within the food chain. The local, regional, and global bio- geochemical cycles... ranged from 0.070–1.42 (mean of 0.252 µg/L). Regarding other regions of world oceans, Ismail et al. (1995) and Seng et al. (1987) reported dissolved Pb concentrations of 0.20 to 0.34 µg/L and 2.0 to 2.8 µg/L respectively for the coastal areas of Malaysia...

Microbial Community Structure and Arsenic Biogeochemistry in Two Arsenic-Impacted Aquifers in Bangladesh

Directory of Open Access Journals (Sweden)

Edwin T. Gnanaprakasam

2017-11-01

Full Text Available Long-term exposure to trace levels of arsenic (As in shallow groundwater used for drinking and irrigation puts millions of people at risk of chronic disease. Although microbial processes are implicated in mobilizing arsenic from aquifer sediments into groundwater, the precise mechanism remains ambiguous. The goal of this work was to target, for the first time, a comprehensive suite of state-of-the-art molecular techniques in order to better constrain the relationship between indigenous microbial communities and the iron and arsenic mineral phases present in sediments at two well-characterized arsenic-impacted aquifers in Bangladesh. At both sites, arsenate [As(V] was the major species of As present in sediments at depths with low aqueous As concentrations, while most sediment As was arsenite [As(III] at depths with elevated aqueous As concentrations. This is consistent with a role for the microbial As(V reduction in mobilizing arsenic. 16S rRNA gene analysis indicates that the arsenic-rich sediments were colonized by diverse bacterial communities implicated in both dissimilatory Fe(III and As(V reduction, while the correlation analyses involved phylogenetic groups not normally associated with As mobilization. Findings suggest that direct As redox transformations are central to arsenic fate and transport and that there is a residual reactive pool of both As(V and Fe(III in deeper sediments that could be released by microbial respiration in response to hydrologic perturbation, such as increased groundwater pumping that introduces reactive organic carbon to depth.

Comparative crytpgam ecology: A review of bryophyte and lichen traits that drive biogeochemistry.

NARCIS (Netherlands)

Cornelissen, J.H.C.; Lang, S.I.; Soudzilovskaia, N.A.; During, H.J.

2007-01-01

• Background: Recent decades have seen a major surge in the study of interspecific variation in functional traits in comparative plant ecology, as a tool to understanding and predicting ecosystem functions and their responses to environmental change. However, this research has been biased almost

Soil Metabolome and Metabolic Fate: Microbial Insights into Freshwater Tidal Wetland Redox Biogeochemistry

Science.gov (United States)

Roy Chowdhury, T.; Bramer, L.; Hoyt, D. W.; Kim, Y. M.; Metz, T. O.; McCue, L. A.; Jansson, J.; Bailey, V. L.

2017-12-01

Earth System Models predict climate extremes that will impact regional and global hydrology. Aquatic-terrestrial transition zones like wetlands will experience the immediate consequence of climate change as shifts in the magnitude and dynamics of hydrologic flow. Such fluctuating hydrology can alter the structure and function of the soil microbial populations that in turn will alter the nature and rate of biogeochemical transformations and significantly impact the carbon balance of the ecosystem. We tested the impacts of shifting hydrology on the soil microbiome and the role of antecedent moisture condition on redox active microbial processes in soils sampled from a tidal freshwater wetland system in the lower Columbia River, WA, USA. Our objectives were to characterize changes in the soil microbial community composition in response to soil moisture legacy effects, and to elucidate relationships between community response, geochemical signatures and metabolite profiles in this soil. The 16S rRNA gene sequencing showed significant decreases in bacterial abundance capable of anaerobic metabolism in response to drying, but quickly recovered to the antecedent moisture condition, as observed by redox processes. Metabolomics and biogeochemical process rates generated evidence for moisture-driven redox conditions as principal controls on the community and metabolic function. Fluctuating redox conditions altered terminal electron acceptor and donor availability and recovery strengths of these pools in soil such that a disproportionate release of carbon dioxide stemmed from alternative anaerobic degradation processes like sulfate and iron reduction in compared to methanogenesis. Our results show that anoxic conditions impact microbial communities in both permanently and temporarily saturated conditions and that rapid change in hydrology can increase substrate availability for both aerobic and anaerobic decomposition processes, including methanogenesis.

Groundwater shapes sediment biogeochemistry and microbial diversity in a submerged Great Lake sinkhole.

Science.gov (United States)

Kinsman-Costello, L E; Sheik, C S; Sheldon, N D; Allen Burton, G; Costello, D M; Marcus, D; Uyl, P A Den; Dick, G J

2017-03-01

For a large part of earth's history, cyanobacterial mats thrived in low-oxygen conditions, yet our understanding of their ecological functioning is limited. Extant cyanobacterial mats provide windows into the putative functioning of ancient ecosystems, and they continue to mediate biogeochemical transformations and nutrient transport across the sediment-water interface in modern ecosystems. The structure and function of benthic mats are shaped by biogeochemical processes in underlying sediments. A modern cyanobacterial mat system in a submerged sinkhole of Lake Huron (LH) provides a unique opportunity to explore such sediment-mat interactions. In the Middle Island Sinkhole (MIS), seeping groundwater establishes a low-oxygen, sulfidic environment in which a microbial mat dominated by Phormidium and Planktothrix that is capable of both anoxygenic and oxygenic photosynthesis, as well as chemosynthesis, thrives. We explored the coupled microbial community composition and biogeochemical functioning of organic-rich, sulfidic sediments underlying the surface mat. Microbial communities were diverse and vertically stratified to 12 cm sediment depth. In contrast to previous studies, which used low-throughput or shotgun metagenomic approaches, our high-throughput 16S rRNA gene sequencing approach revealed extensive diversity. This diversity was present within microbial groups, including putative sulfate-reducing taxa of Deltaproteobacteria, some of which exhibited differential abundance patterns in the mats and with depth in the underlying sediments. The biological and geochemical conditions in the MIS were distinctly different from those in typical LH sediments of comparable depth. We found evidence for active cycling of sulfur, methane, and nutrients leading to high concentrations of sulfide, ammonium, and phosphorus in sediments underlying cyanobacterial mats. Indicators of nutrient availability were significantly related to MIS microbial community composition, while LH communities were also shaped by indicators of subsurface groundwater influence. These results show that interactions between the mats and sediments are crucial for sustaining this hot spot of biological diversity and biogeochemical cycling. © 2016 John Wiley & Sons Ltd.

Influences of Coupled Hydrologic and Microbial Processes on River Corridor Biogeochemistry and Ecology

Science.gov (United States)

Scheibe, T. D.; Song, H. S.; Stegen, J.; Graham, E.; Bao, J.; Goldman, A.; Zhou, T.; Crump, A.; Hou, Z.; Hammond, G. E.; Chen, X.; Huang, M.; Zhang, X.; Nelson, W. C.; Garayburu-Caruso, V. A.

2017-12-01

The exchange of water between rivers and surrounding subsurface environments (hydrologic exchange flows or HEFs) is a vital aspect of river ecology and watershed function. HEFs play a key role in water quality, nutrient cycling, and ecosystem health, and they modulate water temperatures and enhance exchange of terrestrial and aquatic nutrients, which lead to elevated biogeochemical activity. However, these coupled hydrologic and microbiological processes are not well understood, particularly in the context of large managed river systems with highly variable discharge, and are poorly represented in system-scale quantitative models. Using the 75 km Hanford Reach of the Columbia River as the research domain, we apply high-resolution flow simulations supported by field observations to understand how variable river discharge interacts with hydromorphic and hydrogeologic structures to generate HEFs and distributions of subsurface residence times. We combine this understanding of hydrologic processes with microbiological activity measurements and reactive transport models to elucidate the holistic impacts of variable discharge on river corridor (surface and subsurface) ecosystems. In particular, our project seeks to develop and test new conceptual and numerical models that explicitly incorporate i) the character (chemical speciation and thermodynamics) of natural organic matter as it varies along flow paths and through mixing of groundwater and surface water, and ii) the history-dependent response of microbial communities to varying time scales of inundation associated with fluctuations in river discharge. The results of these high-resolution mechanistic models are guiding formulation and parameterization of reduced-order models applicable at reach to watershed scales. New understanding of coupled hydrology and microbiology in the river corridor will play a key role in reduction of uncertainties associated with major Earth system biogeochemical fluxes, improving predictions of environmental and human impacts on water quality and riverine ecosystems, and supporting environmentally responsible management of linked energy-water systems.

Biogeochemistry of Produced Water from Unconventional Wells in the Powder River Basin, Wyoming

Science.gov (United States)

Drogos, D. L.; Nye, C.; Quillinan, S.; Urynowicz, M. A.; Wawrousek, K.

2017-12-01

Microbial activity in waters associated with unconventional oil and gas reservoirs is poorly described but can profoundly affect management strategies for produced water (PW), frac fluids, and biocides. Improved identification of microbial communities is required to develop targeted solutions for detrimental microbial activity such as biofouling and to exploit favorable activity such as microbial induced gas production. We quantified the microbial communities and inorganic chemistry in PW samples from cretaceous formations in six unconventional oil and gas wells in the Powder River Basin in northeast Wyoming. The wells are horizontal completions in the Frontier, Niobrara, Shannon, and Turner formations at depths of 10,000 to 12,000 feet, with PW temperatures ranging from 93oF to 130oF. Biocides utilized in frac fluids primarily included glutaraldehyde and Alkyl Dimethyl Benzyl Ammonium Chloride (ADBAC), with first production occurring in 2013. Geochemical results for PW are: pH 6.5 to 6.9; alkalinity (as CaCO3) 219 to 519 ppm; salinity 13,200 to 22,300 ppm; and TDS 39,364 to 62,725 ppm. Illumina MiSeq 16S rRNA sequencing identified the majority of communities in PW are related to anaerobic, thermophilic, halophilic, chemoheterotrophic, and chemoorganotrophic bacteria, including Thermotoga, Clostridiaceae, Thermoanaerobacter, Petrotoga, Anaerobaculum, Clostridiales, Desulfomicrobium, and Halanaerobiaceae. These findings are important for identification of biogeochemical reactions that affect the organic-inorganic-microbial interactions among reservoir rocks, formation waters, and frac fluids. Better understanding of these biogeochemical reactions would allow producers to formulate frac fluids and biocides to encourage beneficial microbial phenomena such as biogenic gas production while discouraging detrimental effects such as biofouling.

Contributions of isotopic bio-geochemistry to the analysis of water - soil - root interactions

International Nuclear Information System (INIS)

Cayet, S.

2001-07-01

The aim of this work is to study the origin of the isotopic signal of the water produced by plants transpiration. It stresses more particularly on the water movements between the soil and the plant in a context of heterogenous water availability for the root system. The use of water isotopes ( 18 O and 2 H) should allow to precise the water extraction depth of the roots and the plant strategy in front of a hydric stress of edaphic origin. The first chapter presents the place of water in the soil-plant-atmosphere continuum, the different potential sources of water accessible to the plant, the principles of water absorption and the hydric transfer in the plant in relation with the variations of water absorption and of the evaporative conditions. The isotopic method is introduced with the natural variability of the isotopic composition of the atmospheric and soil waters. Finally, the reaction of the plant in front of a hydric stress is described. The second chapter presents a series of experiments carried out in the natural environment and shows the problems encountered during the determination of water origin in heterogenous hydric availability conditions. The third chapter describes the experiments performed in controlled environment. One series of experiments is performed in homogenous hydric availability condition. The aim is to analyze the isotopic signal emitted by the plant and its significance with respect to the feeding water. The second series of experiments is performed in heterogenous hydric availability conditions and in stable or variable climatic conditions. In the last chapter, the different experiments performed in natural environment are presented, first in optimum hydric availability conditions, and second in variable hydric conditions. These experiments allow to reconstruct the isotopic signal of the soil water which is recorded by the plant and to precise the preferential areas of water extraction by the roots, and the competitive behaviour of different plants with respect to the water resources. (J.S.)

Porewater biogeochemistry and soil metabolism in dwarf red mangrove habitats (Twin Cays, Belize)

Science.gov (United States)

Lee, R.Y.; Porubsky, W.P.; Feller, Ilka C.; McKee, K.L.; Joye, S.B.

2008-01-01

Seasonal variability in biogeochemical signatures was used to elucidate the dominant pathways of soil microbial metabolism and elemental cycling in an oligotrophic mangrove system. Three interior dwarf mangrove habitats (Twin Cays, Belize) where surface soils were overlain by microbial mats were sampled during wet and dry periods of the year. Porewater equilibration meters and standard biogeochemical methods provided steady-state porewater profiles of pH, chloride, sulfate, sulfide, ammonium, nitrate/nitrite, phosphate, dissolved organic carbon, nitrogen, and phosphorus, reduced iron and manganese, dissolved inorganic carbon, methane and nitrous oxide. During the wet season, the salinity of overlying pond water and shallow porewaters decreased. Increased rainwater infiltration through soils combined with higher tidal heights appeared to result in increased organic carbon inventories and more reducing soil porewaters. During the dry season, evaporation increased both surface water and porewater salinities, while lower tidal heights resulted in less reduced soil porewaters. Rainfall strongly influenced inventories of dissolved organic carbon and nitrogen, possibly due to more rapid decay of mangrove litter during the wet season. During both times of year, high concentrations of reduced metabolites accumulated at depth, indicating substantial rates of organic matter mineralization coupled primarily to sulfate reduction. Nitrous oxide and methane concentrations were supersaturated indicating considerable rates of nitrification and/or incomplete denitrification and methanogenesis, respectively. More reducing soil conditions during the wet season promoted the production of reduced manganese. Contemporaneous activity of sulfate reduction and methanogenesis was likely fueled by the presence of noncompetitive substrates. The findings indicate that these interior dwarf areas are unique sites of nutrient and energy regeneration and may be critical to the overall persistence and productivity of mangrove-dominated islands in oligotrophic settings. ?? 2008 Springer Science+Business Media B.V.

Linking biogeochemistry to hydro-geometrical variability in tidal estuaries: a generic modeling approach

Directory of Open Access Journals (Sweden)

C. Volta

2016-03-01

increase in atmospheric pCO2, the marine estuary is likely to become a significant CO2 sink in its downstream section. In the decades to come, such a change in behavior might strengthen the overall CO2 sink of the estuary–coastal ocean continuum.

Coupled hydrology and biogeochemistry of Paleocene–Eocene coal beds, northern Gulf of Mexico

Science.gov (United States)

McIntosh, Jennifer C.; Warwick, Peter D.; Martini, Anna M.; Osborn, Stephen G.

2010-01-01

Thirty-six formation waters, gas, and microbial samples were collected and analyzed from natural gas and oil wells producing from the Paleocene to Eocene Wilcox Group coal beds and adjacent sandstones in north-central Louisiana, USA, to investigate the role hydrology plays on the generation and distribution of microbial methane. Major ion chemistry and Cl−Br relations of Wilcox Group formation waters suggest mixing of freshwater with halite-derived brines. High alkalinities (up to 47.8 meq/L), no detectable SO4, and elevated δ13C values of dissolved inorganic carbon (up to 20.5‰ Vienna Peedee belemnite [VPDB]) and CO2 (up to 17.67‰ VPDB) in the Wilcox Group coals and adjacent sandstones indicate the dominance of microbial methanogenesis. The δ13C and δD values of CH4, and carbon isotope fractionation of CO2 and CH4, suggest CO2 reduction is the major methanogenic pathway. Geochemical indicators for methanogenesis drop off significantly at chloride concentrations above ∼1.7 mol/L, suggesting that high salinities inhibit microbial activity at depths greater than ∼1.6 km. Formation waters in the Wilcox Group contain up to 1.6% modern carbon (A14C) to at least 1690 m depth; the covariance of δD values of co-produced H2O and CH4 indicate that the microbial methane was generated in situ with these Late Pleistocene or younger waters. The most enriched carbon isotope values for dissolved inorganic carbon (DIC) and CO2, and highest alkalinities, were detected in Wilcox Group sandstone reservoirs that were CO2 flooded in the 1980s for enhanced oil recovery, leading to the intriguing hypothesis that CO2 sequestration may actually enhance methanogenesis in organic-rich formations.

Occurrence of cyanobacteria - diatom symbiosis in the Bay of Bengal: Implications in biogeochemistry

Digital Repository Service at National Institute of Oceanography (India)

Kulkarni, V.V.; Chitari, R.R.; Narale, D.D.; Patil, J.S.; Anil, A.C.

cyanobacterial endosymbiont of several diatom genera, are the most important diazotrophs accounting for approx. 63% of pelagic N sub(2) -fixation in the world’s oceans. However, information on R. intracellularis is lacking, even though its distribution...

Baseflow vs floods: Linking geomorphology and ecology by blurring disciplinary and ecosystem boundaries

Science.gov (United States)

Doyle, M. W.; Stanley, E. H.; Small, M.

2011-12-01

Linking ideas between geomorphology and ecology has led to some of the formative concepts in river science. These past developments suggest opportunities for greater conceptual alignment novel research agenda via continued cross-fertilization. Hydrologic variability provides a notable example of both intellectual divergence and convergence between geomorphologists and ecologists. Conceptually, both disciplines have recognition of the importance the "natural flow regime." Yet geomorphologists tend to focus on rare events which are formative in sculpting the landscape, while ecologists often emphasize baseflow conditions when biological production and biochemical processes (transformation) dominate over hydrologic transport. Thus, perceptions of river systems begin from two different starting points for these two disciplines. These different perspectives in turn lead to presumed appropriate spatial or temporal scale at which studies should be conducted and can influence site selection. Geomorphologists are more likely to work in rivers subject to pronounced physical change to gain insight to geomorphic processes, and to limit their work to sites with sufficient historic data to analyze change. Conversely, ecologists are likely to select less dynamic physical templates - both in space and time- to allow greater focus on biotic processes. Thus, the basic geography of the disciplines can be surprisingly divergent, as can be the basic timescales of studies. Recent developments in incorporating hydrologic variability into nutrient spiraling have been important in linking geomorphology and stream ecology. Moving from baseflow to more full inclusion of the hydrologic spectrum has dramatically increased understanding of stream biogeochemistry, but it has also drawn in more sophisticated treatments of hydrology into stream biogeochemistry and ecology. This relative success of hydrologic variability and nutrient spiraling studies raises the question of what other opportunities

Challenges in modeling spatiotemporally varying phytoplankton blooms in the Northwestern Arabian Sea and Gulf of Oman

Science.gov (United States)

Sedigh Marvasti, S.; Gnanadesikan, A.; Bidokhti, A. A.; Dunne, J. P.; Ghader, S.

2016-02-01

Recent years have shown an increase in harmful algal blooms in the Northwest Arabian Sea and Gulf of Oman, raising the question of whether climate change will accelerate this trend. This has led us to examine whether the Earth System Models used to simulate phytoplankton productivity accurately capture bloom dynamics in this region - both in terms of the annual cycle and interannual variability. Satellite data (SeaWIFS ocean color) show two climatological blooms in this region, a wintertime bloom peaking in February and a summertime bloom peaking in September. On a regional scale, interannual variability of the wintertime bloom is dominated by cyclonic eddies which vary in location from one year to another. Two coarse (1°) models with the relatively complex biogeochemistry (TOPAZ) capture the annual cycle but neither eddies nor the interannual variability. An eddy-resolving model (GFDL CM2.6) with a simpler biogeochemistry (miniBLING) displays larger interannual variability, but overestimates the wintertime bloom and captures eddy-bloom coupling in the south but not in the north. The models fail to capture both the magnitude of the wintertime bloom and its modulation by eddies in part because of their failure to capture the observed sharp thermocline and/or nutricline in this region. When CM2.6 is able to capture such features in the Southern part of the basin, eddies modulate diffusive nutrient supply to the surface (a mechanism not previously emphasized in the literature). For the model to simulate the observed wintertime blooms within cyclones, it will be necessary to represent this relatively unusual nutrient structure as well as the cyclonic eddies. This is a challenge in the Northern Arabian Sea as it requires capturing the details of the outflow from the Persian Gulf - something that is poorly done in global models.

Modelling potential production of macroalgae farms in UK and Dutch coastal waters

Directory of Open Access Journals (Sweden)

J. van der Molen

2018-02-01

Full Text Available There is increasing interest in macroalgae farming in European waters for a range of applications, including food, chemical extraction for biofuel production. This study uses a 3-D numerical model of hydrodynamics and biogeochemistry to investigate potential production and environmental effects of macroalgae farming in UK and Dutch coastal waters. The model included four experimental farms in different coastal settings in Strangford Lough (Northern Ireland, in Sound of Kerrera and Lynn of Lorne (north-west Scotland and in the Rhine plume (the Netherlands, as well as a hypothetical large-scale farm off the UK north Norfolk coast. The model could not detect significant changes in biogeochemistry and plankton dynamics at any of the farm sites averaged over the farming season. The results showed a range of macroalgae growth behaviours in response to simulated environmental conditions. These were then compared with in situ observations where available, showing good correspondence for some farms and less good correspondence for others. At the most basic level, macroalgae production depended on prevailing nutrient concentrations and light conditions, with higher levels of both resulting in higher macroalgae production. It is shown that under non-elevated and interannually varying winter nutrient conditions, farming success was modulated by the timings of the onset of increasing nutrient concentrations in autumn and nutrient drawdown in spring. Macroalgae carbohydrate content also depended on nutrient concentrations, with higher nutrient concentrations leading to lower carbohydrate content at harvest. This will reduce the energy density of the crop and thus affect its suitability for conversion into biofuel. For the hypothetical large-scale macroalgae farm off the UK north Norfolk coast, the model suggested high, stable farm yields of macroalgae from year to year with substantial carbohydrate content and limited environmental effects.

GESAMP Working Group 38, The Atmospheric Input of Chemicals to the Ocean

Science.gov (United States)

Duce, Robert; Liss, Peter

2014-05-01

There is growing recognition of the impact of the atmospheric input of both natural and anthropogenic substances on ocean chemistry, biology, and biogeochemistry as well as climate. These inputs are closely related to a number of important global change issues. For example, the increasing input of anthropogenic nitrogen species from the atmosphere to much of the ocean may cause a low level fertilization that could result in an increase in marine 'new' productivity of up to ~3% and thus impact carbon drawdown from the atmosphere. Similarly, much of the oceanic iron, which is a limiting nutrient in significant areas of the ocean, originates from the atmospheric input of minerals as a result of the long-range transport of mineral dust from continental regions. The increased supply of soluble phosphorus from atmospheric anthropogenic sources (through large-scale use of fertilizers) may also have a significant impact on surface-ocean biogeochemistry, but estimates of any effects are highly uncertain. There have been few assessments of the atmospheric inputs of sulfur and nitrogen oxides to the ocean and their impact on the rates of ocean acidification. These inputs may be particularly critical in heavily trafficked shipping lanes and in ocean regions proximate to highly industrialized land areas. Other atmospheric substances may also have an impact on the ocean, in particular lead, cadmium, and POPs. To address these and related issues the United Nations Group of Experts on the Scientific Aspects of Marine Environmental Protection (GESAMP) initiated Working Group 38, The Atmospheric Input of Chemicals to the Ocean, in 2008. This Working Group has had four meetings. To date four peer reviewed papers have been produced from this effort, with a least eight others in the process of being written or published. This paper will discuss some of the results of the Working Group's deliberations and its plans for possible future work.

High spatial variability in biogeochemical rates and microbial communities across Louisiana salt marsh landscapes

Science.gov (United States)

Roberts, B. J.; Chelsky, A.; Bernhard, A. E.; Giblin, A. E.

2017-12-01

Salt marshes are important sites for retention and transformation of carbon and nutrients. Much of our current marsh biogeochemistry knowledge is based on sampling at times and in locations that are convenient, most often vegetated marsh platforms during low tide. Wetland loss rates are high in many coastal regions including Louisiana which has the highest loss rates in the US. This loss not only reduces total marsh area but also changes the relative allocation of subhabitats in the remaining marsh. Climate and other anthropogenic changes lead to further changes including inundation patterns, redox conditions, salinity regimes, and shifts in vegetation patterns across marsh landscapes. We present results from a series of studies examining biogeochemical rates, microbial communities, and soil properties along multiple edge to interior transects within Spartina alterniflora across the Louisiana coast; between expanding patches of Avicennia germinans and adjacent S. alterniflora marshes; in soils associated with the four most common Louisiana salt marsh plants species; and across six different marsh subhabitats. Spartina alterniflora marsh biogeochemistry and microbial populations display high spatial variability related to variability in soil properties which appear to be, at least in part, regulated by differences in elevation, hydrology, and redox conditions. Differences in rates between soils associated with different vegetation types were also related to soil properties with S. alterniflora soils often yielding the lowest rates. Biogeochemical process rates vary significantly across marsh subhabitats with individual process rates differing in their hotspot habitat(s) across the marsh. Distinct spatial patterns may influence the roles that marshes play in retaining and transforming nutrients in coastal regions and highlight the importance of incorporating spatial sampling when scaling up plot level measurements to landscape or regional scales.

Total dissolved atmospheric nitrogen deposition in the anoxic Cariaco basin

Science.gov (United States)

Rasse, R.; Pérez, T.; Giuliante, A.; Donoso, L.

2018-04-01

Atmospheric deposition of total dissolved nitrogen (TDN) is an important source of nitrogen for ocean primary productivity that has increased since the industrial revolution. Thus, understanding its role in the ocean nitrogen cycle will help assess recent changes in ocean biogeochemistry. In the anoxic Cariaco basin, the place of the CARIACO Ocean Time-Series Program, the influence of atmospherically-deposited TDN on marine biogeochemistry is unknown. In this study, we measured atmospheric TDN concentrations as dissolved organic (DON) and inorganic (DIN) nitrogen (TDN = DIN + DON) in atmospheric suspended particles and wet deposition samples at the northeast of the basin during periods of the wet (August-September 2008) and dry (March-April 2009) seasons. We evaluated the potential anthropogenic N influences by measuring wind velocity and direction, size-fractionated suspended particles, chemical traces and by performing back trajectories. We found DIN and DON concentration values that ranged between 0.11 and 0.58 μg-N m-3 and 0.11-0.56 μg-N m-3 in total suspended particles samples and between 0.08 and 0.54 mg-N l-1 and 0.02-1.3 mg-N l-1 in wet deposition samples, respectively. Continental air masses increased DON and DIN concentrations in atmospheric suspended particles during the wet season. We estimate an annual TDN atmospheric deposition (wet + particles) of 3.6 × 103 ton-N year-1 and concluded that: 1) Atmospheric supply of TDN plays a key role in the C and N budget of the basin because replaces a fraction of the C (20% by induced primary production) and N (40%) removed by sediment burial, 2) present anthropogenic N could contribute to 30% of TDN atmospheric deposition in the basin, and 3) reduced DON (gas + particles) should be a significant component of bulk N deposition.

Glacial-interglacial variability in ocean oxygen and phosphorus in a global biogeochemical model

Directory of Open Access Journals (Sweden)

V Palastanga

2013-02-01

Full Text Available Increased transfer of particulate matter from continental shelves to the open ocean during glacials may have had a major impact on the biogeochemistry of the ocean. Here, we assess the response of the coupled oceanic cycles of oxygen, carbon, phosphorus, and iron to the input of particulate organic carbon and reactive phosphorus from shelves. We use a biogeochemical ocean model and specifically focus on the Last Glacial Maximum (LGM. When compared to an interglacial reference run, our glacial scenario with shelf input shows major increases in ocean productivity and phosphorus burial, while mean deep-water oxygen concentrations decline. There is a downward expansion of the oxygen minimum zones (OMZs in the Atlantic and Indian Ocean, while the extension of the OMZ in the Pacific is slightly reduced. Oxygen concentrations below 2000 m also decline but bottom waters do not become anoxic. The model simulations show when shelf input of particulate organic matter and particulate reactive P is considered, low oxygen areas in the glacial ocean expand, but concentrations are not low enough to generate wide scale changes in sediment biogeochemistry and sedimentary phosphorus recycling. Increased reactive phosphorus burial in the open ocean during the LGM in the model is related to dust input, notably over the southwest Atlantic and northwest Pacific, whereas input of material from shelves explains higher burial fluxes in continental slope and rise regions. Our model results are in qualitative agreement with available data and reproduce the strong spatial differences in the response of phosphorus burial to glacial-interglacial change. Our model results also highlight the need for additional sediment core records from all ocean basins to allow further insight into changes in phosphorus, carbon and oxygen dynamics in the ocean on glacial-interglacial timescales.

Isolation of phyllosilicate-iron redox cycling microorganisms from an illite-smectite rich hydromorphic soil.

Science.gov (United States)

Shelobolina, Evgenya; Konishi, Hiromi; Xu, Huifang; Benzine, Jason; Xiong, Mai Yia; Wu, Tao; Blöthe, Marco; Roden, Eric

2012-01-01

The biogeochemistry of phyllosilicate-Fe redox cycling was studied in a Phalaris arundinacea (reed canary grass) dominated redoximorphic soil from Shovelers Sink, a small glacial depression near Madison, WI. The clay size fraction of Shovelers Sink soil accounts for 16% of the dry weight of the soil, yet contributes 74% of total Fe. The dominant mineral in the clay size fraction is mixed layer illite-smectite, and in contrast to many other soils and sediments, Fe(III) oxides are present in low abundance. We examined the Fe biogeochemistry of Shovelers Sink soils, estimated the abundance of Fe redox cycling microorganisms, and isolated in pure culture representative phyllosilicate-Fe oxidizing and reducing organisms. The abundance of phyllosilicate-Fe reducing and oxidizing organisms was low compared to culturable aerobic heterotrophs. Both direct isolation and dilution-to-extinction approaches using structural Fe(II) in Bancroft biotite as a Fe(II) source, and O(2) as the electron acceptor, resulted in recovery of common rhizosphere organisms including Bradyrhizobium spp. and strains of Cupriavidus necator and Ralstonia solanacearum. In addition to oxidizing biotite and soluble Fe(II) with O(2), each of these isolates was able to oxidize Fe(II) in reduced NAu-2 smectite with [Formula: see text] as the electron acceptor. Oxidized NAu-2 smectite or amorphous Fe(III) oxide served as electron acceptors for enrichment and isolation of Fe(III)-reducing microorganisms, resulting in recovery of a strain related to Geobacter toluenoxydans. The ability of the recovered microorganisms to cycle phyllosilicate-Fe was verified in an experiment with native Shovelers Sink clay. This study confirms that Fe in the native Shovelers Sink clay is readily available for microbial redox transformation and can be cycled by the Fe(III)-reducing and Fe(II)-oxidizing microorganisms recovered from the soil.

Isolation of Phyllosilicate–Iron Redox Cycling Microorganisms from an Illite–Smectite Rich Hydromorphic Soil

Science.gov (United States)

Shelobolina, Evgenya; Konishi, Hiromi; Xu, Huifang; Benzine, Jason; Xiong, Mai Yia; Wu, Tao; Blöthe, Marco; Roden, Eric

2012-01-01

The biogeochemistry of phyllosilicate–Fe redox cycling was studied in a Phalaris arundinacea (reed canary grass) dominated redoximorphic soil from Shovelers Sink, a small glacial depression near Madison, WI. The clay size fraction of Shovelers Sink soil accounts for 16% of the dry weight of the soil, yet contributes 74% of total Fe. The dominant mineral in the clay size fraction is mixed layer illite–smectite, and in contrast to many other soils and sediments, Fe(III) oxides are present in low abundance. We examined the Fe biogeochemistry of Shovelers Sink soils, estimated the abundance of Fe redox cycling microorganisms, and isolated in pure culture representative phyllosilicate–Fe oxidizing and reducing organisms. The abundance of phyllosilicate–Fe reducing and oxidizing organisms was low compared to culturable aerobic heterotrophs. Both direct isolation and dilution-to-extinction approaches using structural Fe(II) in Bancroft biotite as a Fe(II) source, and O2 as the electron acceptor, resulted in recovery of common rhizosphere organisms including Bradyrhizobium spp. and strains of Cupriavidus necator and Ralstonia solanacearum. In addition to oxidizing biotite and soluble Fe(II) with O2, each of these isolates was able to oxidize Fe(II) in reduced NAu-2 smectite with NO3- as the electron acceptor. Oxidized NAu-2 smectite or amorphous Fe(III) oxide served as electron acceptors for enrichment and isolation of Fe(III)-reducing microorganisms, resulting in recovery of a strain related to Geobacter toluenoxydans. The ability of the recovered microorganisms to cycle phyllosilicate–Fe was verified in an experiment with native Shovelers Sink clay. This study confirms that Fe in the native Shovelers Sink clay is readily available for microbial redox transformation and can be cycled by the Fe(III)-reducing and Fe(II)-oxidizing microorganisms recovered from the soil. PMID:22493596

Modelling potential production of macroalgae farms in UK and Dutch coastal waters

Science.gov (United States)

van der Molen, Johan; Ruardij, Piet; Mooney, Karen; Kerrison, Philip; O'Connor, Nessa E.; Gorman, Emma; Timmermans, Klaas; Wright, Serena; Kelly, Maeve; Hughes, Adam D.; Capuzzo, Elisa

2018-02-01

There is increasing interest in macroalgae farming in European waters for a range of applications, including food, chemical extraction for biofuel production. This study uses a 3-D numerical model of hydrodynamics and biogeochemistry to investigate potential production and environmental effects of macroalgae farming in UK and Dutch coastal waters. The model included four experimental farms in different coastal settings in Strangford Lough (Northern Ireland), in Sound of Kerrera and Lynn of Lorne (north-west Scotland) and in the Rhine plume (the Netherlands), as well as a hypothetical large-scale farm off the UK north Norfolk coast. The model could not detect significant changes in biogeochemistry and plankton dynamics at any of the farm sites averaged over the farming season. The results showed a range of macroalgae growth behaviours in response to simulated environmental conditions. These were then compared with in situ observations where available, showing good correspondence for some farms and less good correspondence for others. At the most basic level, macroalgae production depended on prevailing nutrient concentrations and light conditions, with higher levels of both resulting in higher macroalgae production. It is shown that under non-elevated and interannually varying winter nutrient conditions, farming success was modulated by the timings of the onset of increasing nutrient concentrations in autumn and nutrient drawdown in spring. Macroalgae carbohydrate content also depended on nutrient concentrations, with higher nutrient concentrations leading to lower carbohydrate content at harvest. This will reduce the energy density of the crop and thus affect its suitability for conversion into biofuel. For the hypothetical large-scale macroalgae farm off the UK north Norfolk coast, the model suggested high, stable farm yields of macroalgae from year to year with substantial carbohydrate content and limited environmental effects.

Spatial patterns in salt marsh porewater dissolved organic matter over a spring-neap tidal cycle: insight to the impact of hydrodynamics on lateral carbon fluxes

Science.gov (United States)

Guimond, J. A.; Yu, X.; Duque, C.; Michael, H. A.

2016-12-01

Salt marshes are a hydrologically complex ecosystem. Tides deliver saline surface water to salt marshes via tidal creeks, and freshwater is introduced through lateral groundwater flow and vertical infiltration from precipitation. Locally, sediment heterogeneity, tides, weather, and topography introduce spatial and temporal complexities in groundwater-surface water interactions, which, in turn, can have a large impact on salt marsh biogeochemistry and the lateral fluxes of nutrients and carbon between the marsh platform and tidal creek. In this study, we investigate spatial patterns of porewater fluorescent dissolved organic matter (fDOM) and redox potential over a spring-neap tidal cycle in a mid-latitude tidal salt marsh in Dover, Delaware. Porewater samplers were used in conjunction with a peristaltic pump and YSI EXO Sonde to measure porewater fDOM, electrical conductivity, redox potential and pH from 0.5, 1.0, 1.5, 2.0, and 2.3 meters deep, as well as surface water from the creek and marsh platform. Eh was also measured continuously every 15 minutes with multi-level in-situ redox sensors at 0, 3, and 5m from the tidal creek, and water level and salinity were measured every 15 minutes continuously in 6 wells equipped with data loggers. Preliminary analyses indicate porewater salinity is dependent on the slope of the marsh platform, the elevation of the sample location, and the distance from a tidal creek. Near-creek redox analyses show tidal oscillations up to 300 mV; redox oscillations in the marsh interior show longer timescale changes. The observed redox oscillations coincide with the water level fluctuations at these locations. Therefore, lateral transport of carbon is determined by both hydrologic flow and biogeochemical processes. Results from this study provide insight into the timescales over which salt marsh hydrology impacts porewater biogeochemistry and the mechanisms controlling regional carbon cycling.

Sphere of influence

Science.gov (United States)

After years of New Age celebrity, the Biosphere 2 project is officially going legit. As part of a five-year management agreement, the staff of Columbia University's Lamont-Doherty Earth Observatory will oversee the research, as well as the educational projects and tourism operations, of the enclosed prototype of Earth situated in the Arizona desert. A consortium of scientists from Harvard, Columbia, Stanford, Yale, the Smithsonian Institutions, the Australian National University, and several other institutions has already set about designing experiments in biogeochemistry, sustainable agriculture, climate change, biodiversity, and ecology. Plans also are being made to turn Biosphere 2 into a “science education center devoted exclusively to how the world works.”

Optimization of Instrument Requirements for NASAs GEO-CAPE Coastal Mission Concept Based On Sensor Capability And Cost Studies

Science.gov (United States)

Mannino, Antonio

2015-01-01

NASA's GEOstationary Coastal and Air Pollution Events (GEOCAPE) mission concept recommended by the U.S. National Research Council (2007) focuses on measurements of atmospheric trace gases and aerosols and aquatic coastal ecology and biogeochemistry from geostationary orbit (35,786 km altitude). GEO-CAPE is currently in pre-formulation (pre- Phase) A with no established launch date. NASA continues to support science and engineering studies to reduce mission risk. Instrument design lab (IDL) studies were commissioned in 2014 to design and cost two implementations for geostationary ocean color instruments (1) Wide-Angle Spectrometer (WAS) and (2) Filter Radiometer (FR) and (3) a cost scaling study to compare the costs for implementing different science performance requirements.

Measurements of transuranic elements in the Mediterranean

International Nuclear Information System (INIS)

Ballestra, S.; Holm, E.; Fukai, R.

1976-01-01

In order to supplement the baseline data on the distribution of transuranic elements in the Mediterranean, which have already been reported, further measurements were carried out on sea water samples collected during 1974-75 cruises. In 1974 profile collections were conducted at a station approximately 50 km south of Monaco in addition to surface sampling at a few stations, while surface waters were taken from several stations covering wider regions of the western Mediterranean during the 1975 cruises. The measurement of 238 Pu as well as 241 Am were for the first time successful on the 1975 samples. These data are considered valuable as the basis for understanding transuranic biogeochemistry in the Mediterranean environment

Microbial processes in coastal pollution

International Nuclear Information System (INIS)

Capone, D.G.; Bauer, J.E.

1992-01-01

In this chapter, the authors describe the nature and range of some of the interactions that can occur between the microbiota and environmental contaminants in coastal areas. The implications of such interactions are also discussed. Pollutant types include inorganic nutrients, heavy metals, bulk organics, organic contaminants, pathogenic microorganisms and microbial pollutants. Both the effects of pollutants such as petroleum hydrocarbons on natural microbial populations and the mitigation of contaminant effects by complexation and biodegradation are considered. Finally, several areas of emerging concerns are presented that involve a confluence of biogeochemistry, microbial ecology and applied and public health microbiology. These concerns range in relevance from local/regional to oceanic/global scales. 308 ref

The UK Earth System Model project

Science.gov (United States)

Tang, Yongming

2016-04-01

In this talk we will describe the development and current status of the UK Earth System Model (UKESM). This project is a NERC/Met Office collaboration and has two objectives; to develop and apply a world-leading Earth System Model, and to grow a community of UK Earth System Model scientists. We are building numerical models that include all the key components of the global climate system, and contain the important process interactions between global biogeochemistry, atmospheric chemistry and the physical climate system. UKESM will be used to make key CMIP6 simulations as well as long-time (e.g. millennium) simulations, large ensemble experiments and investigating a range of future carbon emission scenarios.

Disturbance to desert soil ecosystems contributes to dust-mediated impacts at regional scales

Science.gov (United States)

Pointing, Stephen B.; Belnap, Jayne

2014-01-01

This review considers the regional scale of impacts arising from disturbance to desert soil ecosystems. Deserts occupy over one-third of the Earth’s terrestrial surface, and biological soil covers are critical to stabilization of desert soils. Disturbance to these can contribute to massive destabilization and mobilization of dust. This results in dust storms that are transported across inter-continental distances where they have profound negative impacts. Dust deposition at high altitudes causes radiative forcing of snowpack that leads directly to altered hydrological regimes and changes to freshwater biogeochemistry. In marine environments dust deposition impacts phytoplankton diazotrophy, and causes coral reef senescence. Increasingly dust is also recognized as a threat to human health.

BOREAS TF-3 Automated Chamber CO2 Flux Data from the NSA-OBS

Science.gov (United States)

Goulden, Michael L.; Crill, Patrick M.; Hall, Forrest G. (Editor); Conrad, Sara (Editor)

2000-01-01

The BOReal Ecosystem Atmosphere Study Tower Flux (BOREAS TF-3) and Trace Gas Biogeochemistry (TGB-1) teams collected automated CO2 chamber flux data in their efforts to fully describe the CO2 flux at the Northern Study Area-Old Black Spruce (NSA-OBS) site. This data set contains fluxes of CO2 at the NSA-OBS site measured using automated chambers. In addition to reporting the CO2 flux, it reports chamber air temperature, moss temperature, and light levels during each measurement. The data set covers the period from 23-Sep-1995 through 26-Oct-1995 and from 28-May-1996 through 21-Oct-1996. The data are stored in tabular ASCII files.

Linkage of mike she to wetland-dndc for carbon budgeting and anaerobic biogeochemistry simulation

Science.gov (United States)

Jianbo Cui; Changsheng Li; Ge Sun; Carl Trettin

2005-01-01

This study reports the linkage between MIKE SHE and Wetland-DNDC for carbon dynamics and greenhouse gases (GHGs) emissions simulation in forested wetland.Wet1and-DNDC was modified by parameterizing management measures, refining anaerobic biogeochemical processes, and was linked to the hydrological model - MIKE SHE. As a preliminary application, we simulated the effect...

Biogeochemistry of the surficial sediments of the western and eastern continental shelves of India

Digital Repository Service at National Institute of Oceanography (India)

Jacob, J.; Chandramohanakumar, N.; Jayaraj, K.A.; Raveendran, T.V.; Balachandran, K.K.; Joseph, T.; Nair, M.; Achuthankutty, C.T.; Nair, K.K.C.; George, R.; Ravi, Z.P.

continental shelves of India were studied for their total organic matter content and the labile constituents such as total carbohydrates and proteins to get a better understanding of the hydrological and biogeochemical differences of the two regions...

Catchment biogeochemistry modifies long-term effects of acidic deposition on chemistry of mountain lakes

Czech Academy of Sciences Publication Activity Database

Kopáček, Jiří; Bičárová, S.; Hejzlar, Josef; Hynštová, M.; Kaňa, Jiří; Mitošinková, M.; Porcal, Petr; Stuchlík, E.; Turek, Jan

2015-01-01

Roč. 125, č. 3 (2015), s. 315-335 ISSN 0168-2563 R&D Projects: GA ČR(CZ) GA14-09231S Institutional support: RVO:60077344 Keywords : Alpine lakes * dissolved organic carbon * nitrogen * phosphorus * sulphate * chloride Subject RIV: DJ - Water Pollution ; Quality Impact factor: 3.407, year: 2015

Evolution to decay of upwelling and associated biogeochemistry over the southeastern Arabian sea shelf

Digital Repository Service at National Institute of Oceanography (India)

Gupta, G.V.M.; Sudheesh, V.; Sudharma, K.V.; Saravanane, N.; Dhanya, V.; Dhanya, K.R.; Lakshmi, G.; Sudhakar, M.; Naqvi, S.W.A.

was not added for prevent- ing interference with O2 [Wong, 2012]. The small amount of O2 carried by the reagents was not considered. The detection limit was about 2μM. O2 saturation was computed following Garcia and Gordon [1992]. Samples for nutrients (nitrate...

Analyzing the ecosystem carbon dynamics of four European coniferous forests using a biogeochemistry model

NARCIS (Netherlands)

Churkina, G.; Tenhunen, J.; Thornton, P.; Falge, E.; Elbers, J.A.; Erhard, M.; Grünwald, T.; Kowalski, A.; Rannik, Ü.; Sprinz, D.

2003-01-01

This paper provides the first steps toward a regional-scale analysis of carbon (C) budgets. We explore the ability of the ecosystem model BIOME-BGC to estimate the daily and annual C dynamics of four European coniferous forests and shifts in these dynamics in response to changing environmental

The Impact of Parametric Uncertainties on Biogeochemistry in the E3SM Land Model

Science.gov (United States)

Ricciuto, Daniel; Sargsyan, Khachik; Thornton, Peter

2018-02-01

We conduct a global sensitivity analysis (GSA) of the Energy Exascale Earth System Model (E3SM), land model (ELM) to calculate the sensitivity of five key carbon cycle outputs to 68 model parameters. This GSA is conducted by first constructing a Polynomial Chaos (PC) surrogate via new Weighted Iterative Bayesian Compressive Sensing (WIBCS) algorithm for adaptive basis growth leading to a sparse, high-dimensional PC surrogate with 3,000 model evaluations. The PC surrogate allows efficient extraction of GSA information leading to further dimensionality reduction. The GSA is performed at 96 FLUXNET sites covering multiple plant functional types (PFTs) and climate conditions. About 20 of the model parameters are identified as sensitive with the rest being relatively insensitive across all outputs and PFTs. These sensitivities are dependent on PFT, and are relatively consistent among sites within the same PFT. The five model outputs have a majority of their highly sensitive parameters in common. A common subset of sensitive parameters is also shared among PFTs, but some parameters are specific to certain types (e.g., deciduous phenology). The relative importance of these parameters shifts significantly among PFTs and with climatic variables such as mean annual temperature.

Modelling marine sediment biogeochemistry: Current knowledge gaps, challenges, and some methodological advice for advancement

DEFF Research Database (Denmark)

Lessin, Gennadi; Artioli, Yuri; Almroth-Rosell, Elin

2018-01-01

The benthic environment is a crucial component of marine systems in the provision of ecosystem services, sustaining biodiversity and in climate regulation, and therefore important to human society. With the contemporary increase in computational power, model resolution and technological improveme......The benthic environment is a crucial component of marine systems in the provision of ecosystem services, sustaining biodiversity and in climate regulation, and therefore important to human society. With the contemporary increase in computational power, model resolution and technological...... improvements in quality and quantity of benthic data, it is necessary to ensure that benthic systems are appropriately represented in coupled benthic-pelagic biogeochemical and ecological modelling studies. In this paper we focus on five topical challenges related to various aspects of modelling benthic...... environments: organic matter reactivity, dynamics of benthic-pelagic boundary layer, microphytobenthos, biological transport and small-scale heterogeneity, and impacts of episodic events. We discuss current gaps in their understanding and indicate plausible ways ahead. Further, we propose a three...

Biogeochemistry of (210)Pb and (210)Po in fresh waters and sediments. Doctoral thesis

International Nuclear Information System (INIS)

Benoit, G.

1988-06-01

The geochemical cycling of (210)Pb in a Massachusetts lake was studied. A mass balance for the epilimnion showed that (210)Pb inputs by precipitation were matched by outputs on settling particles, so direct uptake by bottom sediments was inconsequential. Below the epilimnion, vertical mixing was very low because of a steep temperature/density gradient, and this limited vertical transport. Anoxic conditions caused remobilization of iron and (210)Pb, which reprecipitated at the oxycline and returned to the bottom via settling. Below the zone of precipitation, (210)Pb and iron distributions resulted from constant release from anoxic sediments and dilution in the water column. Sediment (210)Pb distributions were caused by sedimentation and Fickian transport. The Fickian component was equal to the pore water diffusive flux. In pore waters, (210)Pb and (210)Po were 100 times greater that in overlying water and had steep concentration gradients, unlike Fe, Mn, S(-II), and alkalinity. (210)Pb partition coefficients decreased from 15000 to 1500 with depth controlled by sorption on iron oxides. Remobilization to the water column comes from a thin layer of iron-rich floc near the sediment/water interface. Deeper in the cores, diffusive transport can cause redistribution of (210)Pb to an extent that can affect (210)Pb dating

A Dynamic Information Framework (DIF): A Portal for the Changing Biogeochemistry of Aquatic Systems

Science.gov (United States)

Richey, J. E.; Fernandes, E. C. M.

2014-12-01

The ability of societies to adapt to climate and landuse change in aquatic systems is functionally and practically expressed by how regional stakeholders are able to address complex management issues. These targets represent a very complex set of intersecting issues of scale, cross-sector science and technology, education, politics, and economics. Implications transcend individual projects and ministries. An immediate challenge is to incorporate the realities of changing environmental conditions in these sectors into the policies and projects of the Ministries nominally responsible. Ideally this would be done on the basis of the absolute best understanding of the issues involved, and done in a way that optimizes a multi-stakeholder return. Central to a response is "actionable information-" the synthesis and "bringing to life" of the key information that integrates the end-to-end knowledge required to provide the high-level decision support to make the most informed decisions. But, in practice, the information necessary and even perspectives are virtually absent, in much of especially the developing world. To meet this challenge, we have been developing a Dynamic Information Framework (DIF), primarily through collaborations with the World Bank in Asia, Africa, and Brazil. The DIF is, essentially a decision support structure, built around "earth system" models. The environment is built on progressive information layers that are fed through hydrological and geospatial landscape models to produce outputs that address specific science questions related to water resources management of the region. Information layers from diverse sources are assembled, according to the principles of how the landscape is organized, and computer models are used to bring the information "to life." A fundamental aspect to a DIF is not only the convergence of multi-sector information, but how that information can be conveyed, in the most compelling, and visual, manner. Deployment of the environment in the Cloud facilitates access for stakeholders.

Savanna Vegetation Dynamics and their Influence on Landscape-Scale C, N, and P Biogeochemistry

Science.gov (United States)

Boutton, T. W.; Zhou, Y.; Wu, X. B.; Hyodo, A.

2017-12-01

Soil carbon (C), nitrogen (N) and phosphorus (P) cycles are strongly interlinked and controlled through biological processes, and the P cycle is further controlled through geochemical processes. In grasslands, savannas, and other dryland ecosystems throughout the world, woody plant encroachment often modifies soil C, N, and P stores, although it remains unknown if these three elements change proportionally in response to this vegetation change. We evaluated proportional changes and spatial patterns of soil organic C (SOC), total N (TN), and total P (TP) following woody encroachment by taking spatially-explicit soil cores to a depth of 1.2 m across a subtropical savanna landscape which has undergone encroachment by trees and shrubs during the past century in the Rio Grande Plains, USA. SOC and TN were coupled with respect to increasing magnitudes and spatial patterns along the soil profile following woody encroachment. In contrast, TP increased slower than SOC and TN in surface soils, but faster in subsurface soils. Spatial patterns of TP strongly resembled those of vegetation cover throughout the soil profile, but differed from those of SOC and TN, especially in deeper portions of the profile. The encroachment of woody plants into this P-limited ecosystem resulted in the accumulation of proportionally less soil P compared to C and N in surface soils; however, proportionally more P accrued in deeper portions of the profile beneath woody patches where alkaline soil pH and high carbonate concentrations would favor precipitation of P as relatively insoluble calcium phosphates. Structural equation models (SEM) showed that fine root density explained the greatest proportion of variation in SOC, TN, and TP in the surface soil. In deeper portions of the profile, SEM showed that silt and clay explained much of the variation in SOC and TN, while soil pH strongly controlled TP. This imbalanced relationship highlights that the relative importance of biotic vs. abiotic mechanisms controlling C and N vs. P accumulation following vegetation change may vary with depth in the profile. Our findings suggest that efforts to incorporate the effects of land cover changes into coupled climate-biogeochemical models should attempt to represent C-N-P imbalances that may arise following vegetation change.

Arabian Sea Biogeochemistry from 27 August 1994 to 19 December 1994 (NODC Accession 0000064)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Arabesque was a multidisciplinary oceanographic research project focused on the Arabian Sea and Northwest Indian Ocean during the monsoon and intermonsoon season in...

Role of model structure on the response of soil biogeochemistry to hydro-climatic fluctuations

Science.gov (United States)

Manzoni, S.; Porporato, A.

2005-05-01

Soil carbon and nutrient cycles are strongly affected by hydro-climatic variability, which interacts with the internal ecosystem structure. Here we test the implications of biogeochemical model structure on such dynamics by extending an existing model by the authors and coworkers. When forced by hydro-climatic fluctuations, the different model structures induce specific preferential nutrient paths among the soil pools, which in turn affect nutrient distribution and availability to microbes and plants. In particular, if it is assumed that microbes can directly assimilate organic nitrogen, plants tend to be inferior competitors for nutrients even in well-watered conditions, while if a certain amount of organic nitrogen is assumed to be mineralized without being first incorporated into microbial cells, vegetation can be advantaged over a wide range of soil moisture values. We also investigate the intensification of competition for nutrients (e.g., nitrogen) between plant and soil microbial communities under extreme hydrologic conditions, such as droughts and intense storms. Frequent rainfall events may determine ideal soil moisture conditions for plant uptake, enhancing nitrogen leaching while lowering oxygen concentration and inhibiting microbial activity. During droughts, the soil water potential often drops to the point of hampering the plant nutrient uptake while still remaining high enough for microbial decomposition and nitrogen immobilization. The interplay of microbe and vegetation water stress is investigated in depth as it controls the ability of one community (e.g., plants or soil microbes) to establish competitive advantage on the other. The long-term effects of these dynamics of competition and nutrient allocation are explored under steady-state and stochastic soil moisture conditions to analyze the feedbacks between soil organic matter and vegetation dynamics.

High-speed limnology: using advanced sensors to investigate spatial variability in biogeochemistry and hydrology.

Science.gov (United States)

Crawford, John T; Loken, Luke C; Casson, Nora J; Smith, Colin; Stone, Amanda G; Winslow, Luke A

2015-01-06

Advanced sensor technology is widely used in aquatic monitoring and research. Most applications focus on temporal variability, whereas spatial variability has been challenging to document. We assess the capability of water chemistry sensors embedded in a high-speed water intake system to document spatial variability. This new sensor platform continuously samples surface water at a range of speeds (0 to >45 km h(-1)) resulting in high-density, mesoscale spatial data. These novel observations reveal previously unknown variability in physical, chemical, and biological factors in streams, rivers, and lakes. By combining multiple sensors into one platform, we were able to detect terrestrial-aquatic hydrologic connections in a small dystrophic lake, to infer the role of main-channel vs backwater nutrient processing in a large river and to detect sharp chemical changes across aquatic ecosystem boundaries in a stream/lake complex. Spatial sensor data were verified in our examples by comparing with standard lab-based measurements of selected variables. Spatial fDOM data showed strong correlation with wet chemistry measurements of DOC, and optical NO3 concentrations were highly correlated with lab-based measurements. High-frequency spatial data similar to our examples could be used to further understand aquatic biogeochemical fluxes, ecological patterns, and ecosystem processes, and will both inform and benefit from fixed-site data.

Modelling Marine Sediment Biogeochemistry: Current Knowledge Gaps, Challenges, and Some Methodological Advice for Advancement

Directory of Open Access Journals (Sweden)

Gennadi Lessin

2018-02-01

Full Text Available The benthic environment is a crucial component of marine systems in the provision of ecosystem services, sustaining biodiversity and in climate regulation, and therefore important to human society. With the contemporary increase in computational power, model resolution and technological improvements in quality and quantity of benthic data, it is necessary to ensure that benthic systems are appropriately represented in coupled benthic-pelagic biogeochemical and ecological modelling studies. In this paper we focus on five topical challenges related to various aspects of modelling benthic environments: organic matter reactivity, dynamics of benthic-pelagic boundary layer, microphytobenthos, biological transport and small-scale heterogeneity, and impacts of episodic events. We discuss current gaps in their understanding and indicate plausible ways ahead. Further, we propose a three-pronged approach for the advancement of benthic and benthic-pelagic modelling, essential for improved understanding, management and prediction of the marine environment. This includes: (A development of a traceable and hierarchical framework for benthic-pelagic models, which will facilitate integration among models, reduce risk of bias, and clarify model limitations; (B extended cross-disciplinary approach to promote effective collaboration between modelling and empirical scientists of various backgrounds and better involvement of stakeholders and end-users; (C a common vocabulary for terminology used in benthic modelling, to promote model development and integration, and also to enhance mutual understanding.

Testing the potential for improving quality of sediments impacted by mussel farms using bioturbating polychaete worms

DEFF Research Database (Denmark)

Bergström, Per; Carlsson, Marita S; Lindegarth, Mats

2017-01-01

Biodeposits from farmed mussels severely influence the biogeochemistry of sediments by increasing the levels of organic matter (OM). Mitigation of such negative impacts is important for the development of sustainable aquaculture operations. As a step towards developing methods for remediation...... of coastal sediments affected by mussel farming, the effects of the polychaete, Hediste diversicolor was evaluated experimentally. In a series of field- and laboratory experiments we tested hypotheses about the effects of polychaetes on sediment oxygen consumption, nutrient fluxes and sulphide pools under...... different polychaete densities and sedimentation regimes. The experimental results support the idea that polychaetes can mitigate negative effects on the benthic environment beneath mussel farms. H. diversicolor oxidized the sediment and generally enhanced the oxygen consumption, and thus the decomposition...

A photometric high-throughput method for identification of electrochemically active bacteria using a WO3 nanocluster probe.

Science.gov (United States)

Yuan, Shi-Jie; He, Hui; Sheng, Guo-Ping; Chen, Jie-Jie; Tong, Zhong-Hua; Cheng, Yuan-Yuan; Li, Wen-Wei; Lin, Zhi-Qi; Zhang, Feng; Yu, Han-Qing

2013-01-01

Electrochemically active bacteria (EAB) are ubiquitous in environment and have important application in the fields of biogeochemistry, environment, microbiology and bioenergy. However, rapid and sensitive methods for EAB identification and evaluation of their extracellular electron transfer ability are still lacking. Herein we report a novel photometric method for visual detection of EAB by using an electrochromic material, WO(3) nanoclusters, as the probe. This method allowed a rapid identification of EAB within 5 min and a quantitative evaluation of their extracellular electron transfer abilities. In addition, it was also successfully applied for isolation of EAB from environmental samples. Attributed to its rapidness, high reliability, easy operation and low cost, this method has high potential for practical implementation of EAB detection and investigations.

Progress report, Health Sciences Division

International Nuclear Information System (INIS)

1981-05-01

In Health Physics Branch, work is continuing on development of neutron dosimetry techniques, new thermoluminescent dosimeters, and portable tritium-in-air monitoring instruments. Development of beneficial uses of waste heat has continued in the Environmental Research Branch. Other work includes studies in meteorology, biogeochemistry of nuclear waste management areas, and soil and groundwater studies. Research activity in the Radiation Biology Branch is dealing with the effects of radiation upon a variety of living organisms. Both genetic and mutagenic effects of damage to DNA are being studied as well as repair mechanisms and human diseases caused by repair mechanism deficiencies. In the Biomedical Research Branch, a collaborative study is being undertaken into the retention and excretion of uranium in fuel fabrication workers. (O.T.)

BOREAS TGB-6 Soil Methane Oxidation and Production from NSA BP and Fen Sites

Science.gov (United States)

Deck, Bruce; Wahlen, Martin; Hall, Forrest G. (Editor); Conrad, Sara K. (Editor)

2000-01-01

The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-6) team collected soil methane measurements at several sites in the Southern Study Area (SSA) and Northern Study Area (NSA). This data set contains soil methane consumption (bacterial CH4 oxidation) and associated C-13 fractionation effects in samples that were collected at various sites in 1994 and 1996 from enclosures (chambers). Methane C-13 data in soil gas samples from the NSA Young Jack Pine (YJP) and Old Jack Pine (OJP) sites for 1994 and 1996 are also given. Additional data on the isotopic composition of methane (carbon and hydrogen isotopes) produced in the NSA beaver ponds and fen bog in 1993 and 1994 are given as well. The data are stored in tabular ASCII files.

Efeitos das mudanças do uso da terra na biogeoquímica dos corpos d'água da bacia do rio Ji-Paraná, Rondônia Effects of land use changes in the biogeochemistry of fluvial systems of the Ji-Paraná river basin, Rondônia

Directory of Open Access Journals (Sweden)

Alex Vladimir Krusche

2005-06-01

Full Text Available Este trabalho discute os efeitos das mudanças do uso do solo na biogequímica dos rios da bacia de drenagem do rio Ji-Paraná (Rondônia. Nesta região, a distribuição espacial do desmatamento e das propriedades do solo resultam em sinais diferentes, possibilitando a divisão dos sistemas fluviais em três grupos: rios com águas pobres em íons e baixo impacto; rios com conteúdo iônico intermediário e impacto médio e rios com elevados conteúdo iônico e impacto antropogênico. As características biogeoquímicas dos rios têm relação significativa com a área de pasto, melhor parâmetro para prever a condutividade elétrica (r² = 0,87 e as concentrações de sódio (r² = 0,75, cloreto (r² = 0,69, potássio (r² = 0,63, fosfato (r² = 0.78, nitrogênio inorgânico (r² = 0.52, carbono inorgânico (r² = 0.81 e carbono orgânico (rain ² = 0.51 dissolvidos. Cálcio e magnésio tiveram sua variância explicada pelas características do solo e pastagem. Nossos resultados indicam que as mudanças observadas na micro-escala constituem "sinais biogeoquímicos" gerados pelo processamento do material nas margens dos rios. A medida em que os rios evoluem para ordens superiores, os sinais persistentes nos canais fluviais estão mais associdados às características da bacia de drenagem (solos e uso da terra. Apesar dos efeitos das mudanças observadas no uso do solo não serem ainda detectáveis na macro-escala (bacia amazônica, a disrupção da estrutura e funcionamento dos ecossistemas é detectável nas micro e meso escalas, com alterações significativas na ciclagem de nutrientes nos ecossistemas fluviais.In this article we present the results of the effects of land use change on the river biogeochemistry of the Ji-Paraná basin (Rondônia. In this region, the spatial distribution of deforestation and soil properties result in different biogeochemical signals, allowing the division of the fluvial systems into three groups: rivers with

Evolution of Earth-like Extrasolar Planetary Atmospheres: Assessing the Atmospheres and Biospheres of Early Earth Analog Planets with a Coupled Atmosphere Biogeochemical Model.

Science.gov (United States)

Gebauer, S; Grenfell, J L; Stock, J W; Lehmann, R; Godolt, M; von Paris, P; Rauer, H

2017-01-01

Understanding the evolution of Earth and potentially habitable Earth-like worlds is essential to fathom our origin in the Universe. The search for Earth-like planets in the habitable zone and investigation of their atmospheres with climate and photochemical models is a central focus in exoplanetary science. Taking the evolution of Earth as a reference for Earth-like planets, a central scientific goal is to understand what the interactions were between atmosphere, geology, and biology on early Earth. The Great Oxidation Event in Earth's history was certainly caused by their interplay, but the origin and controlling processes of this occurrence are not well understood, the study of which will require interdisciplinary, coupled models. In this work, we present results from our newly developed Coupled Atmosphere Biogeochemistry model in which atmospheric O 2 concentrations are fixed to values inferred by geological evidence. Applying a unique tool (Pathway Analysis Program), ours is the first quantitative analysis of catalytic cycles that governed O 2 in early Earth's atmosphere near the Great Oxidation Event. Complicated oxidation pathways play a key role in destroying O 2 , whereas in the upper atmosphere, most O 2 is formed abiotically via CO 2 photolysis. The O 2 bistability found by Goldblatt et al. ( 2006 ) is not observed in our calculations likely due to our detailed CH 4 oxidation scheme. We calculate increased CH 4 with increasing O 2 during the Great Oxidation Event. For a given atmospheric surface flux, different atmospheric states are possible; however, the net primary productivity of the biosphere that produces O 2 is unique. Mixing, CH 4 fluxes, ocean solubility, and mantle/crust properties strongly affect net primary productivity and surface O 2 fluxes. Regarding exoplanets, different "states" of O 2 could exist for similar biomass output. Strong geological activity could lead to false negatives for life (since our analysis suggests that reducing gases

Hyporheic Interfaces Serve as Ecological Control Points for Mountainous Landscape Biological Productivity

Science.gov (United States)

Newcomer, M. E.; Dwivedi, D.; Raberg, J.; Fox, P. M.; Nico, P. S.; Wainwright, H. M.; Conrad, M. E.; Bill, M.; Bouskill, N.; Williams, K. H.; Hubbard, S.; Steefel, C. I.

2017-12-01

Riverine systems in snow-dominated mountainous regions often express complex biogeochemistry and river nutrient indicators as a function of hydrologic variability. In early spring, meltwater infiltration from a ripened snowpack creates a hydrological gradient through hillslopes, floodplains, and hyporheic zones. During this time, these systems are more-or-less a passive filter that allows the rising limb of the hydrograph to display chemo-dynamic relationships (inversely proportional) with solutes and nutrients. During the growing season, temperatures, plants, microbes, and hydrologic gradients shift dramatically and activate hyporheic-zone biogeochemistry as a major control on water nutrient degradation. Hyporheic biogeochemical reliance on the timing of meltwater infiltration and the possibility of a longer vernal window under future climate change indicates the importance of hyporheic cycling as the dominant ecological control point on carbon and nitrogen fluxes and transformations. The objective of our study is to develop a predictive understanding of the subsurface and surface controls on hyporheic biogeochemical behavior through data-model integration. Data from our 2017 field campaign in the East River, Colorado, a pristine, mountainous watershed, were taken at key times during the rising, peak, falling, and dry limb of the hydrograph. Throughout multiple locations across this spatial and temporal gradient, we measured surface and subsurface gases, geochemistry, isotopes, and hydrological flow conditions and used this data to constrain a numerical flow and reactive transport model of the hyporheic zone that included microbial and flow feedback dynamics. Our data coupled with the predictive power of our numerical model reveal that the hyporheic zone serves dual roles throughout the year—as a net source of nutrients and solutes during the early vernal phase, shifting to a net sink of nutrients during the summer dry season. The possibility of a future

Ocean climate coupling in the tropical Pacific Ocean over the past fifty years: implications and feedbacks

International Nuclear Information System (INIS)

Wang, Xiujun; Murtugudde, Ragu; Busalacchi, Antonio J.

2007-01-01

Full text: The tropical Pacific plays an important role in climate because of its significant air-sea exchanges of heat, freshwater, and carbon dioxide (C02), and because of its direct linkage to climate variability. There are two dominant modes of climate variability in the Tropics: the El Nino-Southern Oscillation (ENSO) phenomenon and the Pacific Decadal Oscillation (PDO). There has been strong evidence of ENSO and PDO impacts on tropical Pacific physics and biogeochemistry, including heat content, ocean circulation (McPhaden and Zhang 2002), and carbon fluxes (Feely ef al. 2006; Wang ef al. 2006). In this study, we apply a basin-scale ocean circulation-ecosystem-carbon model (Wang ef al. 2006) to study the responses of the tropical Pacific ecosystem, biogeochemistry and carbon cycle to climate forcing over the past 50 years. The model produces strong spatial and temporal variability in surface nutrient concentration, phytoplankton biomass, carbon uptake, and sea-to-air C02 flux, which are largely associated with the ENSO phenomenon. In particular, the size of the tropical Pacific C02 source is large during the ENSO cold phase but small during the ENSO warm phase. There are significant decadal variations in tropical Pacific carbon fluxes, reflecting physical and biogeochemical changes associated with the 1977 and 1997/98 PDO shifts. The 1977 regime shift caused 1 0 C warming in sea surface temperature and -50% reduction in surface iron concentration in the Niho3.4 area, leading to decreased biological activity. While there is a large decrease in phytoplankton growth and biomass, reduction in carbon uptake is smaller than expected, due to phytoplankton photoadaption, which increases the carbon to chlorophyll ratio in the upper euphotic zone and enhances sub-surface production. Photoadaption also results in clearer water near the surface, leading to less heating near the ocean surface and allowing more solar radiation to penetrate the subsurface. Our studies

Soil weathering agents are limited where deep tree roots are removed, even after decades of forest regeneration

Science.gov (United States)

Billings, S. A.; Richter, D. D., Jr.; Hirmas, D.; Lehmeier, C.; Bagchi, S.; Brecheisen, Z.; Sullivan, P. L.; Min, K.; Hauser, E.; Stair, R.; Flournoy, R.

2017-12-01

Deep roots pump reduced C deep into Earth's critical zone (CZ) as they grow and function. This action generates acid-forming CO2 and organic acids (OA) and fosters microbes that also produce these weathering agents. This phenomenon results in a regolith-weathering reaction front that propagates down with vertical root extension and water infiltration. Across old-growth hardwood, younger pine, and annual crop plots at the Calhoun Critical Zone Observatory, we tested the hypothesis that persistent absence of deep roots, a widespread anthropogenic phenomenon, reduces root- and microbially-mediated biogeochemical pools and fluxes important for weathering, even well below maximum root density. We also hypothesized that land use effects on deep soil biogeochemistry is evident even after decades of forest regeneration. Root abundance to 2 m declined with depth, and was greater in old-growth and regenerating forests than in crop plots at most depths. Old-growth soils also contain more roots than younger pine soils: between 30-45 and 70-80 cm depth, old-growth root abundances were greater than in regenerating forests, and old-growth soils exhibited root distributions with less severe declines with depth and harbored more root-associated bacteria than younger forests. Changing root abundances influenced concentrations of weathering agents. At 3 m, in situ soil [CO2] reached 6%, 4%, and 2% in old-growth, regenerating, and crop soils, respectively. Soil organic C (SOC) and extractable OC (EOC, an OA proxy) did not differ across land use, but at 4-5 m EOC/SOC was higher in old-growth compared to regenerating forests and crop soils (20.0±2.6 vs. 2.0±1.0%). We suggest that biogeochemistry deep beneath old-growth forests reflects greater root prevalence and propensity for generation of weathering agents, and that disturbance regimes inducing deep root mortality impose top-down signals relevant to weathering processes deep in Earth's CZ even after decades of forest regeneration.

Organic matter accumulation and degradation in subsurface coastal sediments: a model-based comparison of rapid sedimentation and aquifer transport

Directory of Open Access Journals (Sweden)

J. M. Holstein

2010-11-01

Full Text Available The redox succession in shallow marine sediments generally exhibits a predictable pattern. Pore water profiles from a back barrier tidal flat in the German Wadden Sea depart from the expected redox zoning. Instead, a sulfate minimum zone associated with a sulfate-methane-sulfate double interface and a distinct ammonium peak at 1.5 m below sea floor (mbsf is displayed. Such evidence for significant degradation of organic matter (OM in subsurface layers is challenging our understanding of tidal flat biogeochemistry as little is known about processes that relocate reactive OM into layers far distant from the sediment-water interface. The objectives of our model study were to identify possible mechanisms for the rapid transport of organic matter to subsurface layers that cause the reversed redox succession and to constrain several important biogeochemical control parameters. We compared two scenarios for OM transfer: rapid sedimentation and burial of OM as well as lateral advection of suspended POM. Using a diagenetic model, uncertain process parameters, in particular those connected to OM degradation and (vertical or lateral transport, are systematically calibrated using field data.

We found that both scenarios, advection and sedimentation, had solutions consistent with the observed pore water profiles. For this specific site, however, advective transport of particulate material had to be rejected since the reconstructed boundary conditions were rather improbable. In the alternative deposition set-up, model simulations suggested the deposition of the source OM about 60 yrs before cores were taken. A mean sedimentation rate of approximately 2 cm yr⁻¹ indicates substantial changes in near coast tidal flat morphology, since sea level rise is at a much lower pace. High sedimentation rates most probably reflect the progradation of flats within the study area. These or similar morphodynamic features also occur in other coastal areas

Probing the Gaps: A Synthesis of Well-known and Lesser-known Hydrological Feedbacks Influencing Vegetation Patterning and Long-term Geomorphic Change in Low-gradient Fluvial Landscapes

Science.gov (United States)

Larsen, L.; Christensen, A.; Harvey, J. W.; Ma, H.; Newman, S.; Saunders, C.; Twilley, R.

2017-12-01

Emergence of vegetation patterning in fluvial landscapes is a classic example of how autogenic processes can drive long term fluvial and geomorphic adjustments in aquatic ecosystems. Studies elucidating the physics of flow through vegetation patches have produced understanding of how patterning in topography and vegetation commonly emerges and what effect it has on long term geomorphic change. However, with regard to mechanisms underlying pattern existence and resilience, several knowledge gaps remain, including the role of landscape-scale flow-vegetation feedbacks, feedbacks that invoke additional biogeochemical or biological agents, and determination of the relative importance of autogenic processes relative to external drivers. Here we provide a synthesis of the processes over a range of scales known to drive vegetation patterning and sedimentation in low gradient fluvial landscapes, emphasizing recent field and modeling studies in the Everglades, FL and Wax Lake Delta, LA that address these gaps. In the Everglades, while flow routing and sediment redistribution at the patch scale is known to be a primary driver of vegetation pattern emergence, landscape-scale routing of flow, as driven by the landscape's connectivity, can set up positive feedbacks that influence the rate of pattern degradation. Recent flow release experiments reveal that an additional feedback, involving phosphorus concentrations, flow, and floating vegetation communities that are abundant under low phosphorus, low flow conditions further stabilizes the alternative landscape states established through local scale sediment redistribution. Biogeochemistry-vegetation-sediment feedbacks may also be important for geomorphic development of newly emerging landscapes such as the Wax Lake Delta. There, fine sediment deposition shapes hydrogeomorphic zones with vegetation patterns that stimulate the growth of biofilm, while biofilm characteristics override the physical characteristics of vegetation

Behavior of medically-derived 131I in the tidal Potomac River

International Nuclear Information System (INIS)

Rose, Paula S.; Smith, Joseph P.; Cochran, J. Kirk; Aller, Robert C.; Swanson, R. Lawrence

2013-01-01

Iodine-131 (t 1/2 = 8.04 d) is administered to patients for treatment of thyroid disorders, excreted by patients and discharged to surface waters via sewage effluent. Radionuclides generally behave like their stable analogs; therefore, medically-derived 131 I is useful as a transport-reaction tracer of anthropogenic inputs and the aquatic biogeochemistry of iodine. Iodine-131 was measured in Potomac River water and sediments in the vicinity of the Blue Plains Water Pollution Control Plant (WPCP), Washington, DC, USA. Concentrations measured in sewage effluent from Blue Plains WPCP and in the Potomac River suggest a relatively continuous source of this radionuclide. The range of 131 I concentrations detected in surface water was 0.076 ± 0.006 to 6.07 ± 0.07 Bq L −1 . Iodine-131 concentrations in sediments ranged from 1.3 ± 0.8 to 117 ± 2 Bq kg −1 dry weight. Partitioning in the sewage effluent from Blue Plains and in surface waters indicated that 131 I is associated with colloidal and particulate organic material. The behavior of medically-derived 131 I in the Potomac River is consistent with the nutrient-like behavior of natural iodine in aquatic environments. After discharge to the river via sewage effluent, it is incorporated into biogenic particulate material and deposited in sediments. Solid phase sediment profiles of 131 I indicated rapid mixing or sedimentation of particulate debris and diagenetic remineralization and recycling on short time scales. - Highlights: ► Medically-derived 131 I was measured in sewage effluent, river water, and sediments. ► Sediment 210 Pb and 7 Be profiles help characterize the sedimentary environment. ► 131 I flux to sediments in study area is ∼ 1% of that discharged in sewage effluent. ► 131 I distributions constrain reaction-transport processes to weekly time scales. ► Collectively these data are used to better understand iodine biogeochemistry

From position-specific isotope labeling towards soil fluxomics: a novel toolbox to assess the microbial impact on biogeochemical cycles

Science.gov (United States)

Apostel, C.; Dippold, M. A.; Kuzyakov, Y.

2015-12-01

Understanding the microbial impact on C and nutrient cycles is one of the most important challenges in terrestrial biogeochemistry. Transformation of low molecular weight organic substances (LMWOS) is a key step in all biogeochemical cycles because 1) all high molecular substances pass the LMWOS pool during their degradation and 2) only LMWOS can be taken up by microorganisms intact. Thus, the transformations of LMWOS are dominated by biochemical pathways of the soil microorganisms. Thus, understanding fluxes and transformations in soils requires a detailed knowledge on the microbial metabolic network and its control mechanism. Tracing C fate in soil by isotopes became on of the most applied and promising biogeochemistry tools but studies were nearly exclusively based on uniformly labeled substances. However, such tracers do not allow the differentiation of the intact use of the initial substances from its transformation to metabolites. The novel tool of position-specific labeling enables to trace molecule atoms separately and thus to determine the cleavage of molecules - a prerequisite for metabolic tracing. Position-specific labeling of basic metabolites and quantification of isotope incorporation in CO2 and bulk soil enabled following the basic metabolic pathways of microorganisms. However, the combination of position-specific 13C labeling with compound-specific isotope analysis of microbial biomarkers and metabolites like phospholipid fatty acids (PLFA) or amino sugars revealed new insights into the soil fluxome: First, it enables tracing specific anabolic pathways in diverse microbial communities in soils e.g. carbon starvation pathways versus pathways reflecting microbial growth. Second, it allows identification of specific pathways of individual functional microbial groups in soils in situ. Tracing metabolic pathways and understanding their regulating factors are crucial for soil C fluxomics i.e. the unravaling of the complex network of C transformations

Recent Ship, Satellite and Autonomous Observations of Southern Ocean Eddies

Science.gov (United States)

Strutton, P. G.; Moreau, S.; Llort, J.; Phillips, H. E.; Patel, R.; Della Penna, A.; Langlais, C.; Lenton, A.; Matear, R.; Dawson, H.; Boyd, P. W.

2016-12-01

The Southern Ocean is the area of greatest uncertainty regarding the exchange of CO2 between the ocean and atmosphere. It is also a region of abundant energetic eddies that significantly impact circulation and biogeochemistry. In the Indian sector of the Southern Ocean, cyclonic eddies are unusual in that they are upwelling favorable, as for cyclonic eddies elsewhere, but during summer they are low in silicate and phytoplankton biomass. The reverse is true for anticyclonic eddies in that they have counter-intuitive positive chlorophyll anomalies in summer. Similar but less obvious patterns occur in the Pacific and Atlantic sectors. Using ship, satellite and autonomous observations in the region south of Australia, the physical and biogeochemical signatures of both types of eddies were documented in 2016. A cyclonic eddy that lived for seven weeks exhibited doming isopycnals indicative of upwelling. However, low surface silicate and chlorophyll concentrations appeared to be characteristic of surface waters to the south where the eddy formed. Higher chlorophyll was confined to filaments at the eddy edge. Surface nitrate and phosphate concentrations were more than sufficient for a bloom of non-siliceous phytoplankton to occur. Acoustic observations from a high resolution TRIAXUS transect through the eddy documented high zooplankton biomass in the upper 150m. It is hypothesized that a non-diatom bloom was prevented by grazing pressure, but light may have also been an important limiting resource in late summer (April). Two SOCCOM floats that were deployed in the eddy field continued to monitor the physics, nitrate and bio-optics through the transition to winter. These observations across complementary platforms have identified and then explained the reason for these unexpected biological anomalies in an energetic and globally important region of the global ocean. Understanding the role of eddies in this region will be critical to the representation of mesoscale

Preindustrial nitrous oxide emissions from the land biosphere estimated by using a global biogeochemistry model

Science.gov (United States)

Xu, Rongting; Tian, Hanqin; Lu, Chaoqun; Pan, Shufen; Chen, Jian; Yang, Jia; Zhang, Bowen

2017-07-01

To accurately assess how increased global nitrous oxide (N2O) emission has affected the climate system requires a robust estimation of the preindustrial N2O emissions since only the difference between current and preindustrial emissions represents net drivers of anthropogenic climate change. However, large uncertainty exists in previous estimates of preindustrial N2O emissions from the land biosphere, while preindustrial N2O emissions on the finer scales, such as regional, biome, or sector scales, have not been well quantified yet. In this study, we applied a process-based Dynamic Land Ecosystem Model (DLEM) to estimate the magnitude and spatial patterns of preindustrial N2O fluxes at the biome, continental, and global level as driven by multiple environmental factors. Uncertainties associated with key parameters were also evaluated. Our study indicates that the mean of the preindustrial N2O emission was approximately 6.20 Tg N yr-1, with an uncertainty range of 4.76 to 8.13 Tg N yr-1. The estimated N2O emission varied significantly at spatial and biome levels. South America, Africa, and Southern Asia accounted for 34.12, 23.85, and 18.93 %, respectively, together contributing 76.90 % of global total emission. The tropics were identified as the major source of N2O released into the atmosphere, accounting for 64.66 % of the total emission. Our multi-scale estimates provide a robust reference for assessing the climate forcing of anthropogenic N2O emission from the land biosphere

Impact of polychaetes (Nereis spp. and Arenicola marina on carbon biogeochemistry in coastal marine sediments†

Directory of Open Access Journals (Sweden)

Kristensen Erik

2001-10-01

Full Text Available Known effects of bioturbation by common polychaetes (Nereis spp. and Arenicola marina in Northern European coastal waters on sediment carbon diagenesis is summarized and assessed. The physical impact of irrigation and reworking activity of the involved polychaete species is evaluated and related to their basic biology. Based on past and present experimental work, it is concluded that effects of bioturbation on carbon diagenesis from manipulated laboratory experiments cannot be directly extrapolated to in situ conditions. The 45–260% flux (e.g., CO2 release enhancement found in the laboratory is much higher than usually observed in the field (10–25%. Thus, the faunal induced enhancement of microbial carbon oxidation in natural sediments instead causes a reduction of the organic matter inventory rather than an increased release of CO2 across the sediment/water interface. The relative decrease in organic inventory (Gb/Gu is inversely related to the relative increase in microbial capacity for organic matter decay (kb/ku. The equilibrium is controlled by the balance between organic input (deposition of organic matter at the sediment surface and the intensity of bioturbation. Introduction of oxygen to subsurface sediment and removal of metabolites are considered the two most important underlying mechanisms for the stimulation of carbon oxidation by burrowing fauna. Introduction of oxygen to deep sediment layers of low microbial activity, either by downward irrigation transport of overlying oxic water or by upward reworking transport of sediment to the oxic water column will increase carbon oxidation of anaerobically refractory organic matter. It appears that the irrigation effect is larger than and to a higher degree dependent on animal density than the reworking effect. Enhancement of anaerobic carbon oxidation by removal of metabolites (reduced diffusion scale may cause a significant increase in total sediment metabolism. This is caused by three possible mechanisms: (i combined mineralization and biological uptake; (ii combined mineralization and abiogenic precipitation; and (iii alleviation of metabolite inhibition. Finally, some suggestions for future work on bioturbation effects are presented, including: (i experimental verification of metabolite inhibition in bioturbated sediments; (ii mapping and quantification of the role of metals as electron acceptors in bioturbated sediments; and (iii identification of microbial community composition by the use of new molecular biological techniques. These three topics are not intended to cover all unresolved aspects of bioturbation, but should rather be considered a list of obvious gaps in our knowledge and present new and appealing approaches.

Mechanistically-Based Field-Scale Models of Uranium Biogeochemistry from Upscaling Pore-Scale Experiments and Models

International Nuclear Information System (INIS)

Tim Scheibe; Alexandre Tartakovsky; Brian Wood; Joe Seymour

2007-01-01

Effective environmental management of DOE sites requires reliable prediction of reactive transport phenomena. A central issue in prediction of subsurface reactive transport is the impact of multiscale physical, chemical, and biological heterogeneity. Heterogeneity manifests itself through incomplete mixing of reactants at scales below those at which concentrations are explicitly defined (i.e., the numerical grid scale). This results in a mismatch between simulated reaction processes (formulated in terms of average concentrations) and actual processes (controlled by local concentrations). At the field scale, this results in apparent scale-dependence of model parameters and inability to utilize laboratory parameters in field models. Accordingly, most field modeling efforts are restricted to empirical estimation of model parameters by fitting to field observations, which renders extrapolation of model predictions beyond fitted conditions unreliable. The objective of this project is to develop a theoretical and computational framework for (1) connecting models of coupled reactive transport from pore-scale processes to field-scale bioremediation through a hierarchy of models that maintain crucial information from the smaller scales at the larger scales; and (2) quantifying the uncertainty that is introduced by both the upscaling process and uncertainty in physical parameters. One of the challenges of addressing scale-dependent effects of coupled processes in heterogeneous porous media is the problem-specificity of solutions. Much effort has been aimed at developing generalized scaling laws or theories, but these require restrictive assumptions that render them ineffective in many real problems. We propose instead an approach that applies physical and numerical experiments at small scales (specifically the pore scale) to a selected model system in order to identify the scaling approach appropriate to that type of problem. Although the results of such studies will generally not be applicable to other broad classes of problems, we believe that this approach (if applied over time to many types of problems) offers greater potential for long-term progress than attempts to discover a universal solution or theory. We are developing and testing this approach using porous media and model reaction systems that can be both experimentally measured and quantitatively simulated at the pore scale, specifically biofilm development and metal reduction in granular porous media. The general approach we are using in this research follows the following steps: (1) Perform pore-scale characterization of pore geometry and biofilm development in selected porous media systems. (2) Simulate selected reactive transport processes at the pore scale in experimentally measured pore geometries. (3) Validate pore-scale models against laboratory-scale experiments. (4) Perform upscaling to derive continuum-scale (local darcy scale) process descriptions and effective parameters. (5) Use upscaled models and parameters to simulate reactive transport at the continuum scale in a macroscopically heterogeneous medium

Stable isotope fractionation at a glacial hydrothermal field: implications for biogeochemistry and biosignatures on Mars

Science.gov (United States)

Cousins, C.; Bowden, R.; Fogel, M.; Cockell, C.; Crawford, I.; Gunn, M.; Karlsson, M. T.; Thorsteinsson, T.

2012-12-01

Hydrothermal environments that arise through the interaction between volcanogenic heat and glacial ice are ideal sites for understanding microbial biogeochemical processes on Earth, and also potentially on Mars where similar volcano-cryosphere interactions are thought to have occurred in the past. The Kverkfjöll subglacial basaltic volcano in central Iceland is geographically isolated, with little influence from flora, fauna, and human activity. Major environmental inputs include geothermal heat, meltwater from ice and snow, and outgassing of CO2, H2S, and SO2. Large physiochemical gradients exist, from steaming fumaroles and boiling hydrothermal pools, to frozen geothermal ground and glacial ice. Stable isotope measurements of total organic carbon, total sulphur, and total nitrogen were coupled with metagenomic analysis of the residing microbial communities, with the aim to identify biogeochemical relationships and processes operating within the Kverkfjöll geothermal environment, and also to identify any isotopic biosignatures that could be preserved within geothermal sediments. This study focused on a variety of samples taken along a hot spring stream that fed into a large ice-confined geothermal lake. Samples analysed range from unconsolidated hot spring sediments, well-developed microbial mats, and dissolved sulphate from hot spring fluids. From the anoxic spring source, the stream water increases in dissolved oxygen, decreases in temperature, yet maintains a pH of ~4. The spring environment is dominated by dissolved sulphate (~2.3 mM), with lower levels of nitrate (~50 μM), phosphorus (~5μM), and ammonium (~1.5 μM). Stable S isotope analysis reveals a fractionation of ~3.2 ‰ between sediment sulphide (as pyrite; δ34S ~0‰), and dissolved water sulphate (δ34S ~3.2 ‰) consistently along the hot spring stream, indicating the presence of an active sulphur cycle, although not one dominated by sulphate reduction (e.g. very negative sulphide δ34S). This fractionation trend was absent within lake sediments, possibly due to a number of mixed sources feeding into the lake, in addition to the spring stream. δ13C in sediments becomes increasingly more negative going downstream, along with increasing removal of TOC. Microbial mats were largely similar with very positive C isotope ratios (δ13C -9.4 to -12.6 ‰) typical of sulphur oxidizing microbes. Bulk genomic DNA was extracted from sediments and mats in order to identify firstly the community composition via 454-pyrosequencing, and secondly the functional diversity within these physiochemically varied environments. This metagenomic data will be combined with stable isotope patterns to elucidate the metabolic potential of hydrothermal environments at Kverkfjöll, which can be used to infer potential biogeochemical pathways of signatures of such pathways on Mars in similar, past environments.

Mixing and its effects on biogeochemistry in the persistently stratified, deep, tropical Lake Matano, Indonesia

DEFF Research Database (Denmark)

Katsev, Sergei; Crowe, Sean; Mucci, Alfonso

2010-01-01

In the > 590-m deep, tropical Lake Matano (Indonesia), stratification is characterized by weak thermal gradients (... steady-state conditions, vertical eddy diffusion coefficients (K-z) cannot be estimated by conventional methods that rely on time derivatives of temperature distributions. We use and compare several alternative methods: one-dimensional k-epsilon modeling, three-dimensional hydrodynamic modeling...... composition in the deep waters is close to those of the ground and tributary waters. The vertical distribution of K-z is used in a biogeochemical reaction-transport model. We show that, outside of a narrow thermocline region, the vertical distributions of dissolved oxygen, iron, methane, and phosphorus...

Separate effects of flooding and anaerobiosis on soil greenhouse gas emissions and redox sensitive biogeochemistry

Science.gov (United States)

Gavin McNicol; Whendee L. Silver

2014-01-01

Soils are large sources of atmospheric greenhouse gases, and both the magnitude and composition of soil gas emissions are strongly controlled by redox conditions. Though the effect of redox dynamics on greenhouse gas emissions has been well studied in flooded soils, less research has focused on redox dynamics without total soil inundation. For the latter, all that is...

Iron from melting glaciers fuels the phytoplankton blooms in Amundsen Sea (Southern Ocean): Iron biogeochemistry

NARCIS (Netherlands)

Gerringa, L.J.A.; Alderkamp, A.C.; Laan, P.; Thuróczy, C.E.; de Baar, H.J.W.; Mills, M.M.; van Dijken, G.L.; van Haren, H.; Arrigo, K.R.

2012-01-01

Dissolved iron (DFe) and total dissolvable Fe (TDFe) were measured in January-February 2009 in Pine Island Bay, as well as in the Pine Island and Amundsen polynyas (Amundsen Sea, Southern Ocean). Iron (Fe) has been shown to be a limiting nutrient for phytoplankton growth, even in the productive

LLNL SFA OBER SBR FY17 Program Management and Performance Report: Subsurface Biogeochemistry of Actinides

Energy Technology Data Exchange (ETDEWEB)

Kersting, Annie B. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

2017-06-23

A major scientific challenge in environmental sciences is to identify the dominant processes controlling actinide transport in the environment. It is estimated that currently, over 2200 metric tons of anthropogenic plutonium (Pu) has accumulated worldwide, a number that increases yearly with additional spent nuclear fuel (Ewing et al., 2010). Plutonium has been shown to migrate on the scale of kilometers, giving way to a critical concern that the fundamental biogeochemical processes that control its behavior in the subsurface are not well understood (Kersting et al. 1999; Novikov et al. 2006; Santschi et al. 2002). Neptunium (Np) is less prevalent in the environment; however, it is predicted to be a significant long-term dose contributor in high-level nuclear waste. Our focus on Np chemistry in this Science Plan is intended to help formulate a better understanding of Pu redox transformations in the environment and clarify the differences between the two long-lived actinides. The research approach of our Science Plan combines (1) Fundamental Mechanistic Studies that identify and quantify biogeochemical processes that control actinide behavior in solution and on solids, (2) Field Integration Studies that investigate the transport characteristics of Pu and test our conceptual understanding of actinide transport, and (3) Actinide Research Capabilities that allow us to achieve the objectives of this Scientific Focus Area (SFA) and provide new opportunities for advancing actinide environmental chemistry. These three Research Thrusts form the basis of our SFA Science Program.

Biogeochemistry of the compost bioreactor components of a composite acid mine drainage passive remediation system

International Nuclear Information System (INIS)

Johnson, D. Barrie; Hallberg, Kevin B.

2005-01-01

The compost bioreactor ('anaerobic cell') components of three composite passive remediation systems constructed to treat acid mine drainage (AMD) at the former Wheal Jane tin mine, Cornwall, UK were studied over a period of 16 months. While there was some amelioration of the preprocessed AMD in each of the three compost bioreactors, as evidenced by pH increase and decrease in metal concentrations, only one of the cells showed effective removal of the two dominant heavy metals (iron and zinc) present. With two of the compost bioreactors, concentrations of soluble (ferrous) iron draining the cells were significantly greater than those entering the reactors, indicating that there was net mobilisation (by reductive dissolution) of colloidal and/or solid-phase ferric iron compounds within the cells. Soluble sulfide was also detected in waters draining all three compost bioreactors which was rapidly oxidised, in contrast to ferrous iron. Oxidation and hydrolysis of iron, together with sulfide oxidation, resulted in reacidification of processed AMD downstream of the compost bioreactors in two of the passive treatment systems. The dominant cultivatable microorganism in waters draining the compost bioreactors was identified, via analysis of its 16S rRNA gene, as a Thiomonas sp. and was capable of accelerating the dissimilatory oxidation of both ferrous iron and reduced sulfur compounds. Sulfate-reducing bacteria (SRB) were also detected, although only in the bioreactor that was performing well were these present in significant numbers. This particular compost bioreactor had been shut down for 10 months prior to the monitoring period due to operational problems. This unforeseen event appears to have allowed more successful development of AMD-tolerant and other microbial populations with critical roles in AMD bioremediation, including neutrophilic SRB (nSRB), in this compost bioreactor than in the other two, where the throughput of AMD was not interrupted. This study has revealed new insights into the operation of compost bioreactors used to remediate mine waters and has shown that, when operated under appropriate conditions, they can be highly efficient at generating alkalinity and removing metals from extremely acidic, metal-rich AMD

Factors influencing the biogeochemistry of sedimentary carbon and phosphorus in the Sacramento-San Joaquin Delta

Science.gov (United States)

Nilsen, E.B.; Delaney, M.L.

2005-01-01

This study characterizes organic carbon (Corganic) and phosphorus (P) geochemistry in surface sediments of the Sacramento-San Joaquin Delta, California. Sediment cores were collected from five sites on a sample transect from the edge of the San Francisco Bay eastward to the freshwater Consumnes River. The top 8 cm of each core were analyzed (in 1-cm intervals) for Corganic, four P fractions, and redox-sensitive trace metals (uranium and manganese). Sedimentary Corganic concentrations and Corganic:P ratios decreased, while reactive P concentrations increased moving inland in the Delta. The fraction of total P represented by organic P increased inland, while that of authigenic P was higher bayward than inland reflecting increased diagenetic alteration of organic matter toward the bayward end of the transect. The redox indicator metals are consistent with decreasing sedimentary suboxia inland. The distribution of P fractions and C:P ratios reflect the presence of relatively labile organic matter in upstream surface sediments. Sediment C and P geochemistry is influenced by site-specific particulate organic matter sources, the sorptive power of the sedimentary material present, physical forcing, and early diagenetic transformations presumably driven by Corganic oxidation. ?? 2005 Estuarine Research Federation.

Biogeochemistry of uranium in plants associated to phosphatic rocks in the coastal region of Syria

International Nuclear Information System (INIS)

Jubeli, Y.; Al-Oudat, M.; Al-Rayes, A.; El-Sharabi, N.A.

2000-07-01

Investigation studies in general, demonstrate that background levels of U in plant ash are less than 2 ppm and plant materials which contain more in excess of this amount are indicative either of local uranium mineralization, or the presence of high background levels of uranium in the substrate. Uranium concentrations in different plant parts grown on decomposite phosphate rocks in the mountain coast region of Syria was investigated. Mean uranium concentrations in the soil ranged between 0.44 - 3.91 ppm in the reference area and 22 - 92 ppm in the area of outcrop in phosphate rocks. The results showed that low-order plant forms (Fuaria, Lycopodium, and Pteridium) readily accumulate uranium, whereas high-order forms accumulate uranium in certain parts only. The greatest amount of uranium in flowering parts is concentrated in the plant roots, followed by leaves, twigs and fruits. In addition, results showed that there is a good correlation between uranium in soil and uranium in plant roots. the study demonstrate that Galium Canum could be considered as a good uranium indicator plant for two reason: It was distributed on decomposite phosphate rocks only, and the high concentration of uranium in aerial part similar to the concentration in soil (89.9 ppm). Lagurus Ovatus may be considered as uranium indicator plant, because it was highly dense on the outcrop phosphate rocks, and has a high uranium concentration in its roots (up to 93 ppm) and aerial parts (up to 33 ppm) compared to concentrations in roots and aerial parts in the reference area (10.2 and 0.37 ppm) respectively. (Author)

Towards an integrated observing system for ocean carbon and biogeochemistry at a time of change

CSIR Research Space (South Africa)

Gruber, N

2009-09-01

Full Text Available . The longest time-series for inorganic carbon started in the early 1980s (Keeling, 1993, Gruber et al., 2001; Bates, 1997) near Bermuda and in 1988 was joined by a second time-series near Hawaii (Sabine et al., 1995; Dore et al., 2003; Keeling et al., 2004... century primarily as a result of the burning of fossil fuels (Sarmiento and Gruber, 2002). In response, atmospheric CO2 has GRUBER ET AL: AN INTEGRATED BIOGEOCHEMICAL OBSERVING SYSTEM 2 increased by more than 100 ppm (30%), with today’s concentration...

The biogeochemistry of carbon across a gradient of streams and rivers within the Congo Basin

Science.gov (United States)

Mann, P. J.; Spencer, R. G. M.; Dinga, B. J.; Poulsen, J. R.; Hernes, P. J.; Fiske, G.; Salter, M. E.; Wang, Z. A.; Hoering, K. A.; Six, J.; Holmes, R. M.

2014-04-01

Dissolved organic carbon (DOC) and inorganic carbon (DIC, pCO2), lignin biomarkers, and theoptical properties of dissolved organic matter (DOM) were measured in a gradient of streams and rivers within the Congo Basin, with the aim of examining how vegetation cover and hydrology influences the composition and concentration of fluvial carbon (C). Three sampling campaigns (February 2010, November 2010, and August 2011) spanning 56 sites are compared by subbasin watershed land cover type (savannah, tropical forest, and swamp) and hydrologic regime (high, intermediate, and low). Land cover properties predominately controlled the amount and quality of DOC, chromophoric DOM (CDOM) and lignin phenol concentrations (∑8) exported in streams and rivers throughout the Congo Basin. Higher DIC concentrations and changing DOM composition (lower molecular weight, less aromatic C) during periods of low hydrologic flow indicated shifting rapid overland supply pathways in wet conditions to deeper groundwater inputs during drier periods. Lower DOC concentrations in forest and swamp subbasins were apparent with increasing catchment area, indicating enhanced DOC loss with extended water residence time. Surface water pCO2 in savannah and tropical forest catchments ranged between 2,600 and 11,922 µatm, with swamp regions exhibiting extremely high pCO2 (10,598-15,802 µatm), highlighting their potential as significant pathways for water-air efflux. Our data suggest that the quantity and quality of DOM exported to streams and rivers are largely driven by terrestrial ecosystem structure and that anthropogenic land use or climate change may impact fluvial C composition and reactivity, with ramifications for regional C budgets and future climate scenarios.

Implications of changes in tropical shifting cultivation intensification on land productivity and GHG-related biogeochemistry

Science.gov (United States)

Bustier, Bernard; Ngoy, Alfred; Pietsch, Stephan; Mosnier, Aline

2017-04-01

Traditional shifting cultivation used to be a sustainable type of land use for the subsistence of populations in tropical rainforests. The vast resource of moist tropical forests together with low population densities allowed for long fallow periods on sparsely distributed slash and burn parcels with large areas of untouched forest in between. Population growth and concomitant increase in land demand for subsistence as well as increasing infrastructure development for commercial forestry, cash crops and mining, however, altered the picture over recent decades. As a result, fallow periods were reduced due to lack of pristine land. In this study we use field data and modeling results from the Congo Basin to assess the impacts of reduced fallow periods on Carbon sequestration dynamics using a BGC model calibrated and validated with > 150 research plots distributed over the western Congo Basin and representing different management and land use histories. We find that the average carbon sequestration rate reduces over the number of cultivation cycles and that a reduction of the fallow from 10 years to 7 years reduce the average carbon sequestration between 13 and 21% and from 7 years to 4 years between 23 and 29% depending on soil fertility. Results will be discussed in the context of population growth and changes in environmetal conditions.

Dynamics of sea-ice biogeochemistry in the coastal Antarctica during transition from summer to winter

Digital Repository Service at National Institute of Oceanography (India)

Shetye, S; Jena, B.; Mohan, R.

The seasonality of carbon dioxide partial pressure (pCO₂), air-sea CO₂ fluxes and associated environmental parameters were investigated in the Antarctic coastal waters. The in-situ survey was carried out from the austral summer...

Late Holocene variations in Pacific surface circulation and biogeochemistry inferred from proteinaceous deep-sea corals

Directory of Open Access Journals (Sweden)

T. P. Guilderson

2013-09-01

Full Text Available δ15N and δ13C data obtained from samples of proteinaceous deep-sea corals collected from the North Pacific Subtropical Gyre (Hawaiian Archipelago and the central equatorial Pacific (Line Islands document multidecadal to century-scale variability in the isotopic composition of surface-produced particulate organic matter exported to the deep sea. Comparison of the δ13C data, where Line Islands samples are 0.6‰ more positive than the Hawaiian samples, supports the contention that the North Pacific Subtropical Gyre is more efficient than the tropical upwelling system at trapping and/or recycling nutrients within the mixed layer. δ15N values from the Line Islands samples are also more positive than those from the central gyre, and within the Hawaiian samples there is a gradient with more positive δ15N values in samples from the main Hawaiian Islands versus the French Frigate Shoals in the Northwestern Hawaiian Islands. The gradient in the Hawaiian samples likely reflects the relative importance of algal acquisition of metabolic N via dissolved seawater nitrate uptake versus nitrogen fixation. The Hawaiian sample set also exhibits a strong decrease in δ15N values from the mid-Holocene to present. We hypothesize that this decrease is most likely the result of decreasing trade winds, and possibly a commensurate decrease in entrainment of more positive δ15N-NO3 subthermocline water masses.

Dynamics of sea-ice biogeochemistry in the coastal Antarctica during transition from summer to winter

Directory of Open Access Journals (Sweden)

Suhas Shetye

2017-05-01

Full Text Available The seasonality of carbon dioxide partial pressure (pCO2, air-sea CO2 fluxes and associated environmental parameters were investigated in the Antarctic coastal waters. The in-situ survey was carried out from the austral summer till the onset of winter (January 2012, February 2010 and March 2009 in the Enderby Basin. Rapid decrease in pCO2 was evident under the sea-ice cover in January, when both water column and sea-ice algal activity resulted in the removal of nutrients and dissolved inorganic carbon (DIC and increase in pH. The major highlight of this study is the shift in the dominant biogeochemical factors from summer to early winter. Nutrient limitation (low Si/N, sea-ice cover, low photosynthetically active radiation (PAR, deep mixed layer and high upwelling velocity contributed towards higher pCO2 during March (early winter. CO2 fluxes suggest that the Enderby Basin acts as a strong CO2 sink during January (−81 mmol m−2 d−1, however it acts as a weak sink of CO2 with −2.4 and −1.7 mmol m−2 d−1 during February and March, respectively. The present work, concludes that sea ice plays a dual role towards climate change, by decreasing sea surface pCO2 in summer and enhancing in early winter. Our observations emphasize the need to address seasonal sea-ice driven CO2 flux dynamics in assessing Antarctic contributions to the global oceanic CO2 budget.

Iron from melting glaciers fuels the phytoplankton blooms in Amundsen Sea (Southern Ocean) : Iron biogeochemistry

NARCIS (Netherlands)

Gerringa, Loes J. A.; Alderkamp, Anne-Carlijn; Laan, Patrick; Thuroczy, Charles-Edouard; De Baar, Hein J. W.; Mills, Matthew M.; van Dijken, Gert L.; van Haren, Hans; Arrigo, Kevin R.

2012-01-01

Dissolved iron (DFe) and total dissolvable Fe (TDFe) were measured in January-February 2009 in Pine Island Bay, as well as in the Pine Island and Amundsen polynyas (Amundsen Sea, Southern Ocean). Iron (Fe) has been shown to be a limiting nutrient for phytoplankton growth, even in the productive

Microbial communities and biogeochemistry in an area of Engraulis encrasicolus spawning in the Sicilian Channel

Directory of Open Access Journals (Sweden)

Rosabruna La Ferla

2014-06-01

The rates of production, hydrolysis and degradation activities were quite low, in agreement with the general oligotrophy of the area and in agreement with this findings, picophytoplankton contribution to total production amounted to over than 65%. In terms of metabolic activities, different spatial distributions were observed between the autotrophic and heterotrophic components. In particular, heterotrophic metabolism showed high values in the layer located below the thermocline and above the DCM. Concerning the enzymatic activities, total leucine aminopeptidase activity showed the highest rates, followed by alkaline phosphatase and beta-Glucosidase (Caruso et al., 2014. Distribution of the dissolved enzymatic activities acting on proteins varied widely along the column, accounting for 5 to 90% of the total enzymatic activity and always prevailed on dissolved b-GLU. Total enzymatic activity rates were comparable to those obtained in the oligotrophic zones of Ionian and Mediterranean Sea (Zaccone et al., 2012, while the analysis of the dissolved fraction was the first report for the Mediterranean. In conclusion, the multidisciplinary scientific approach used in this study depicted a complex picture of the study area evidencing a high heterogeneity and dynamism of plankton communities, probably associated to peculiar hydrology of this ecosystem. On the whole, the study area appeared to be characterized by a relatively efficient microbial food web. However, low trophic conditions were stressed by all the biological and biochemical patterns, suggesting an important role of heterotrophic processes in this area in the examined summer period. Consequently, how and how much the microbial web sustains fish reproduction and larval survival need a more comprehensive analysis and will be focused in further research.

The CMEMS-Med-MFC-Biogeochemistry operational system: implementation of NRT and Multi-Year validation tools

Science.gov (United States)

Salon, Stefano; Cossarini, Gianpiero; Bolzon, Giorgio; Teruzzi, Anna

2017-04-01

The Mediterranean Monitoring and Forecasting Centre (Med-MFC) is one of the regional production centres of the EU Copernicus Marine Environment Monitoring Service (CMEMS). Med-MFC manages a suite of numerical model systems for the operational delivery of the CMEMS products, providing continuous monitoring and forecasting of the Mediterranean marine environment. The CMEMS products of fundamental biogeochemical variables (chlorophyll, nitrate, phosphate, oxygen, phytoplankton biomass, primary productivity, pH, pCO2) are organised as gridded datasets and are available at the marine.copernicus.eu web portal. Quantitative estimates of CMEMS products accuracy are prerequisites to release reliable information to intermediate users, end users and to other downstream services. In particular, validation activities aim to deliver accuracy information of the model products and to serve as a long term monitoring of the performance of the modelling systems. The quality assessment of model output is implemented using a multiple-stages approach, basically inspired to the classic "GODAE 4 Classes" metrics and criteria (consistency, quality, performance and benefit). Firstly, pre-operational runs qualify the operational model system against historical data, also providing a verification of the improvements of the new model system release with respect to the previous version. Then, the near real time (NRT) validation aims at delivering a sustained on-line skill assessment of the model analysis and forecast, relying on the NRT available relevant observations (e.g. in situ, Bio Argo and satellite observations). NRT validation results are operated on weekly basis and published on the MEDEAF web portal (www.medeaf.inogs.it). On a quarterly basis, the integration of the NRT validation activities delivers a comprehensive view of the accuracy of model forecast through the official CMEMS validation webpage. Multi-Year production (e.g. reanalysis runs) follows a similar procedure, and the validation is achieved using the same metrics on available historical observations (e.g. the World Ocean Atlas 2013 dataset). Results of the validation activities show that the comparison of the different variables of the CMEMS products with experimental data is feasible at different levels (i.e. either as skill assessment of the short-term forecast and as model consistency through different system versions) and at different spatial and temporal scales. In particular, the accuracy of some variables (chlorophyll, nitrate, oxygen) can be provided at weekly scale and sub-mesoscale, others (carbonate system, phosphate) at quarterly/annual and sub-basin scale, and others (phytoplankton biomass, primary production) only at the level of consistency of model functioning (e.g. literature- or climatology-based). In spite of a wide literature on model validation has been produced so far, maintaining a validation framework in the biogeochemical operational contest that fulfils GODAE criteria is still a challenge. Recent results of the validation activities and new potential validation framework at the Med-MFC will be presented in our contribution.

Water table fluctuations and soil biogeochemistry: An experimental approach using an automated soil column system

Science.gov (United States)

Rezanezhad, F.; Couture, R.-M.; Kovac, R.; O'Connell, D.; Van Cappellen, P.

2014-02-01

Water table fluctuations significantly affect the biological and geochemical functioning of soils. Here, we introduce an automated soil column system in which the water table regime is imposed using a computer-controlled, multi-channel pump connected to a hydrostatic equilibrium reservoir and a water storage reservoir. The potential of this new system is illustrated by comparing results from two columns filled with 45 cm of the same homogenized riparian soil. In one soil column the water table remained constant at -20 cm below the soil surface, while in the other the water table oscillated between the soil surface and the bottom of the column, at a rate of 4.8 cm d-1. The experiment ran for 75 days at room temperature (25 ± 2 °C). Micro-sensors installed at -10 and -30 cm below the soil surface in the stable water table column recorded constant redox potentials on the order of 600 and -200 mV, respectively. In the fluctuating water table column, redox potentials at the same depths oscillated between oxidizing (∼700 mV) and reducing (∼-100 mV) conditions. Pore waters collected periodically and solid-phase analyses on core material obtained at the end of the experiment highlighted striking geochemical differences between the two columns, especially in the time series and depth distributions of Fe, Mn, K, P and S. Soil CO2 emissions derived from headspace gas analysis exhibited periodic variations in the fluctuating water table column, with peak values during water table drawdown. Transient redox conditions caused by the water table fluctuations enhanced microbial oxidation of soil organic matter, resulting in a pronounced depletion of particulate organic carbon in the midsection of the fluctuating water table column. Denaturing Gradient Gel Electrophoresis (DGGE) revealed the onset of differentiation of the bacterial communities in the upper (oxidizing) and lower (reducing) soil sections, although no systematic differences in microbial community structure between the stable and fluctuating water table columns were detected.

NIGHTHAWK - A Program for Modeling Saturated Batch and Column Experiments Incorporating Equilibrium and Kinetic Biogeochemistry

Science.gov (United States)

NIGHTHAWK simulates the fate and transport of biogeochemically reactive contaminants in the saturated subsurface. Version 1.2 supports batch and one- dimensional advective-dispersive-reactive transport involving a number of biogeochemical processes, including: microbially-mediate...

Integrated modelling of enhanced in situ biodenitrification in a fractured aquifer: biogeochemistry and isotope geochemistry

Science.gov (United States)

Rodríguez-Escales, Paula; Folch, Albert; van Breukelen, Boris M.; Vidal-Gavilan, Georgina; Soler, Albert

2014-05-01

Enhanced in-situ biodenitrification is a feasible technology to recovery groundwater polluted by nitrates and achieves drinking water standards. Under optimum conditions, nitrate is reduced by autochthonous bacteria trough different reactions until arrive to harmless dinitrogen gas. Isotopic fractionation monitoring in field applications allows knowing the exact degree and the real scope of this technology. Using the Rayleigh equation the change in the isotope ratio of the nitrate molecule (δ15N-NO3-, δ18O-NO3-) is related to the fraction of molecules remaining as a result of biodenitrification. However, Rayleigh application at field scale is sometimes limited due to other processes involved during groundwater flow such as dispersion or adsorption and geological media heterogeneities that interferes in concentration values. Then, include isotope fractionation processes in reactive transport models is a useful tool to interpret and predict data from in-situ biodenitrification. We developed a reactive transport model of enhanced in situ application at field scale in a fractured aquifer that considers biogeochemical processes as well as isotope fractionation to enable better monitoring and management of this technology. Processes considered were: microbiological- exogenous and endogenous nitrate and sulfate respiration coupled with microbial growth and decay, geochemical reactions (precipitation of calcite) and isotopic fractionation (δ15N-NO3-; δ18O- NO3- and carbon isotope network). The 2-D simulations at field scale were developed using PHAST code. Modeling of nitrate isotope geochemistry has allowed determining the extent of biodenitrification in model domain. We have quantified which is the importance in decreasing of nitrate concentrations due to biodegradation (percentage of biodegradation, 'B%') and due to dilution process (percentage of dilution, 'D%'). On the other hand, the stable carbon isotope geochemistry has been modeled. We have considered the isotopic carbon fractionation of different carbon species involved in enhanced biodenitrification: external organic carbon, biomass, inorganic carbon (in different forms) and calcite. The inclusion of carbon isotopes in the model, which are involved in both direct (oxidation of organic carbon) and indirect (carbonate mineral interaction) processes of enhanced biodenitrification, improves the evaluation of the overall model consistency due to the central role of carbon in the reaction network.

Mechanistically-Based Field-Scale Models of Uranium Biogeochemistry from Upscaling Pore-Scale Experiments and Models

Energy Technology Data Exchange (ETDEWEB)

Tim Scheibe; Alexandre Tartakovsky; Brian Wood; Joe Seymour

2007-04-19

Effective environmental management of DOE sites requires reliable prediction of reactive transport phenomena. A central issue in prediction of subsurface reactive transport is the impact of multiscale physical, chemical, and biological heterogeneity. Heterogeneity manifests itself through incomplete mixing of reactants at scales below those at which concentrations are explicitly defined (i.e., the numerical grid scale). This results in a mismatch between simulated reaction processes (formulated in terms of average concentrations) and actual processes (controlled by local concentrations). At the field scale, this results in apparent scale-dependence of model parameters and inability to utilize laboratory parameters in field models. Accordingly, most field modeling efforts are restricted to empirical estimation of model parameters by fitting to field observations, which renders extrapolation of model predictions beyond fitted conditions unreliable. The objective of this project is to develop a theoretical and computational framework for (1) connecting models of coupled reactive transport from pore-scale processes to field-scale bioremediation through a hierarchy of models that maintain crucial information from the smaller scales at the larger scales; and (2) quantifying the uncertainty that is introduced by both the upscaling process and uncertainty in physical parameters. One of the challenges of addressing scale-dependent effects of coupled processes in heterogeneous porous media is the problem-specificity of solutions. Much effort has been aimed at developing generalized scaling laws or theories, but these require restrictive assumptions that render them ineffective in many real problems. We propose instead an approach that applies physical and numerical experiments at small scales (specifically the pore scale) to a selected model system in order to identify the scaling approach appropriate to that type of problem. Although the results of such studies will generally not be applicable to other broad classes of problems, we believe that this approach (if applied over time to many types of problems) offers greater potential for long-term progress than attempts to discover a universal solution or theory. We are developing and testing this approach using porous media and model reaction systems that can be both experimentally measured and quantitatively simulated at the pore scale, specifically biofilm development and metal reduction in granular porous media. The general approach we are using in this research follows the following steps: (1) Perform pore-scale characterization of pore geometry and biofilm development in selected porous media systems. (2) Simulate selected reactive transport processes at the pore scale in experimentally measured pore geometries. (3) Validate pore-scale models against laboratory-scale experiments. (4) Perform upscaling to derive continuum-scale (local darcy scale) process descriptions and effective parameters. (5) Use upscaled models and parameters to simulate reactive transport at the continuum scale in a macroscopically heterogeneous medium.

Biogeochemistry of Recently Discovered Oxygen-Depleted Mesoscale Eddies in the Open Eastern Tropical North Atlantic

Science.gov (United States)

Fiedler, B.; Grundle, D.; Löscher, C. R.; Schütte, F.; Hauss, H.; Karstensen, J.; Silva, P.; Koertzinger, A.

2016-02-01

Severely oxygen-depleted mesoscale features in the open eastern tropical North Atlantic, which are formed in the Mauritanian upwelling region, were discovered only recently. So far, few remote surveys conducted with autonomous platforms such as moorings, underwater gliders and profiling floats have provided a very first insight into these mesoscale eddies. Due to their hydrographic properties such water bodies are well isolated from ambient waters and therefore can develop severe near-surface oxygen deficits. In this presentation we show results from the first-ever biogeochemical survey of one of these anticyclonic mode-water eddies conducted in spring 2014 at the Cape Verde Ocean Observatory (CVOO) off West Africa. Very low oxygen concentrations of 4.5 µmol kg-1 associated with a CO2 partial pressure of 1164 µatm were found close to the core of the eddy (at 100 m depth). Measurements for nitrate and phosphate also show exceptional high values. Findings point to rapid oxygen consumption through remineralization of organic matter along with depressed lateral mixing of this water body. Indeed, rates for oxygen utilization (OUR) were found to be enhanced when compared to known values in the Atlantic. A closer look into the carbonate system inside the eddýs core revealed disadvantageous conditions for calcifying organisms with the pH dropping down to 7.6 and the Aragonite saturation level reaching 1 at the lower boundary of the euphotic zone. Finally, strong indications for a shift in nitrogen cycling in the core of the eddy from nitrification towards denitrification were found based on gene abundance and N2O-isotope analyses. To our knowledge such severe hypoxic and even suboxic near-surface conditions along with active denitrification have never been reported before in the open Atlantic Ocean.

Biogeochemistry of the compost bioreactor components of a composite acid mine drainage passive remediation system.

Science.gov (United States)

Johnson, D Barrie; Hallberg, Kevin B

2005-02-01

The compost bioreactor ("anaerobic cell") components of three composite passive remediation systems constructed to treat acid mine drainage (AMD) at the former Wheal Jane tin mine, Cornwall, UK were studied over a period of 16 months. While there was some amelioration of the preprocessed AMD in each of the three compost bioreactors, as evidenced by pH increase and decrease in metal concentrations, only one of the cells showed effective removal of the two dominant heavy metals (iron and zinc) present. With two of the compost bioreactors, concentrations of soluble (ferrous) iron draining the cells were significantly greater than those entering the reactors, indicating that there was net mobilisation (by reductive dissolution) of colloidal and/or solid-phase ferric iron compounds within the cells. Soluble sulfide was also detected in waters draining all three compost bioreactors which was rapidly oxidised, in contrast to ferrous iron. Oxidation and hydrolysis of iron, together with sulfide oxidation, resulted in reacidification of processed AMD downstream of the compost bioreactors in two of the passive treatment systems. The dominant cultivatable microorganism in waters draining the compost bioreactors was identified, via analysis of its 16S rRNA gene, as a Thiomonas sp. and was capable of accelerating the dissimilatory oxidation of both ferrous iron and reduced sulfur compounds. Sulfate-reducing bacteria (SRB) were also detected, although only in the bioreactor that was performing well were these present in significant numbers. This particular compost bioreactor had been shut down for 10 months prior to the monitoring period due to operational problems. This unforeseen event appears to have allowed more successful development of AMD-tolerant and other microbial populations with critical roles in AMD bioremediation, including neutrophilic SRB (nSRB), in this compost bioreactor than in the other two, where the throughput of AMD was not interrupted. This study has revealed new insights into the operation of compost bioreactors used to remediate mine waters and has shown that, when operated under appropriate conditions, they can be highly efficient at generating alkalinity and removing metals from extremely acidic, metal-rich AMD.

Preindustrial nitrous oxide emissions from the land biosphere estimated by using a global biogeochemistry model

Directory of Open Access Journals (Sweden)

R. Xu

2017-07-01

Full Text Available To accurately assess how increased global nitrous oxide (N2O emission has affected the climate system requires a robust estimation of the preindustrial N2O emissions since only the difference between current and preindustrial emissions represents net drivers of anthropogenic climate change. However, large uncertainty exists in previous estimates of preindustrial N2O emissions from the land biosphere, while preindustrial N2O emissions on the finer scales, such as regional, biome, or sector scales, have not been well quantified yet. In this study, we applied a process-based Dynamic Land Ecosystem Model (DLEM to estimate the magnitude and spatial patterns of preindustrial N2O fluxes at the biome, continental, and global level as driven by multiple environmental factors. Uncertainties associated with key parameters were also evaluated. Our study indicates that the mean of the preindustrial N2O emission was approximately 6.20 Tg N yr−1, with an uncertainty range of 4.76 to 8.13 Tg N yr−1. The estimated N2O emission varied significantly at spatial and biome levels. South America, Africa, and Southern Asia accounted for 34.12, 23.85, and 18.93 %, respectively, together contributing 76.90 % of global total emission. The tropics were identified as the major source of N2O released into the atmosphere, accounting for 64.66 % of the total emission. Our multi-scale estimates provide a robust reference for assessing the climate forcing of anthropogenic N2O emission from the land biosphere

Cable Bacteria in Freshwater Sediments

DEFF Research Database (Denmark)

Risgaard-Petersen, Nils; Kristiansen, Michael; Frederiksen, Rasmus

2015-01-01

In marine sediments cathodic oxygen reduction at the sediment surface can be coupled to anodic sulfide oxidation in deeper anoxic layers through electrical currents mediated by filamentous, multicellular bacteria of the Desulfobulbaceae family, the so-called cable bacteria. Until now, cable...... bacteria have only been reported from marine environments. In this study, we demonstrate that cable bacteria also occur in freshwater sediments. In a first step, homogenized sediment collected from the freshwater stream Giber Å, Denmark, was incubated in the laboratory. After 2 weeks, pH signatures...... marine cable bacteria, with the genus Desulfobulbus as the closest cultured lineage. The results of the present study indicate that electric currents mediated by cable bacteria could be important for the biogeochemistry in many more environments than anticipated thus far and suggest a common evolutionary...

2013 POLAR MARINE SCIENCE GORDON RESEARCH CONFERENCE AND GORDON RESEARCH SEMINAR (MARCH 10-15, 2013 - FOUR POINTS SHERATON, VENTURA CA)

Energy Technology Data Exchange (ETDEWEB)

Bowman, Jeff S.

2012-12-15

As dynamic and thermodynamic processes associated with warming trends are impacting sea ice cover, oceanographic processes and atmosphere-ocean interactions across polar regions at unprecedented rate, observations and models show fundamentally different regional ecosystem responses. The non-linear and multi-directional biogeochemical responses of polar systems to atmospheric and oceanographic forcings emphasize the need to consider and reconcile observations and models at global and regional scales. The 9th GRC on Polar Marine Science will discuss recent developments and challenges emerging from contemporary and paleo-climate observations and models, encompassing regional and global scales. The GRC addresses the structure, functionalities and controls of polar marine systems through topics such as sea ice biogeochemistry, atmosphere-ocean forcings and interactions, food web trophodynamics, carbon and elemental cycling and fluxes, and a spectrum of ecological processes and interactions.

The role of silicon in higher plants under salinity and drought stress

Directory of Open Access Journals (Sweden)

Devrim Coskun

2016-07-01

Full Text Available Although deemed a non-essential mineral nutrient, silicon (Si is clearly beneficial to plant growth and development, particularly under stress conditions, including salinity and drought. Here, we review recent research on the physiological, biochemical, and molecular mechanisms underlying Si-induced alleviation of osmotic and ionic stresses associated with salinity and drought. We distinguish between changes observed in the apoplast (i.e. suberization, lignification, and silicification of the extracellular matrix; transpirational bypass flow of solutes and water, and those of the symplast (i.e. transmembrane transport of solutes and water; gene expression; oxidative stress; metabolism, and discuss these features in the context of Si biogeochemistry and bioavailability in agricultural soils, evaluating the prospect of using Si fertilization to increase crop yield and stress tolerance under salinity and drought conditions.

Nitrogen Cycling in the Mycorrhizosphere: Multipartite Interactions and Plant Nitrogen Uptake Vary with Fertilization Legacy

Science.gov (United States)

Hestrin, R.; Lehmann, J.

2017-12-01

Soil microbes play an important role in rhizosphere nutrient cycling and plant productivity. In this study, the contributions of soil microbes to organic matter mineralization and plant nitrogen uptake were investigated using incubation and microcosm experiments. Microbial inocula included arbuscular mycorrhizal fungi and microbial communities sampled across a long-term gradient of nitrogen fertilization. Stable isotopes, nanoSIMS imaging, and phospholipid fatty acid analysis were used to track carbon and nitrogen movement from organic matter into microbes, mycorrhizal fungi, and plants. Results show that multipartite relationships between plants and microbes increased plant growth and access to nitrogen from organic matter, and that nitrogen fertilization history had a lasting effect on microbial contributions to fungal and plant nitrogen uptake. This research links rhizosphere ecology and land management with terrestrial biogeochemistry.

Tracing global biogeochemical cycles and meridional overturning circulation using chromophoric dissolved organic matter

Science.gov (United States)

Nelson, Norman B.; Siegel, David A.; Carlson, Craig A.; Swan, Chantal M.

2010-02-01

Basin-scale distributions of light absorption by chromophoric dissolved organic matter (CDOM) are positively correlated (R2 > 0.8) with apparent oxygen utilization (AOU) within the top kilometer of the Pacific and Indian Oceans. However, a much weaker correspondence is found for the Atlantic (R2 organic matter from sinking particles. The observed meridional-depth sections of CDOM result from a balance between biogeochemical processes (autochthonous production and solar bleaching) and the meridional overturning circulation. Rapid mixing in the Atlantic dilutes CDOM in the interior and implies that the time scale for CDOM accumulation is greater than ˜50 years. CDOM emerges as a unique tracer for diagnosing changes in biogeochemistry and the overturning circulation, similar to dissolved oxygen, with the additional feature that it can be quantified from satellite observation.

Dynamic of biogeochemical selenium cycle in terrestrial ecosystems: retention and reactivity in soil; role of vegetation

International Nuclear Information System (INIS)

Di Tullo, Pamela

2015-01-01

This work was performed in the frame of the safety assessment program prior to the possible construction of an underground repository for nuclear waste (HAVL). To consolidate risk assessment models associated to a potential 79 Se biosphere contamination, biogeochemistry of stable selenium was investigated, aiming firstly to highlight the dynamics of Se cycling in a forest ecosystem, in terms of inventories and annual fluxes. Consequently to these first results, which suggest a clay role of soil and its organic pool in the global Se cycle, two studies based on the use of isotopically enriched tracers were further carried out in order to clarify the processes involved in (i) Se retention and reactivity in soils and (ii) incorporation of inorganic Se within organic pool of vegetal biomass. (author) [fr

Modeling of flow and reactive transport in IPARS

KAUST Repository

Wheeler, Mary Fanett

2012-03-11

In this work, we describe a number of efficient and locally conservative methods for subsurface flow and reactive transport that have been or are currently being implemented in the IPARS (Integrated Parallel and Accurate Reservoir Simulator). For flow problems, we consider discontinuous Galerkin (DG) methods and mortar mixed finite element methods. For transport problems, we employ discontinuous Galerkin methods and Godunov-mixed methods. For efficient treatment of reactive transport simulations, we present a number of state-of-the-art dynamic mesh adaptation strategies and implementations. Operator splitting approaches and iterative coupling techniques are also discussed. Finally, numerical examples are provided to illustrate the capability of IPARS to treat general biogeochemistry as well as the effectivity of mesh adaptations with DG for transport. © 2012 Bentham Science Publishers. All rights reserved.

Biogeochemical Impact of Hurricane Harvey on Texas Coastal Lagoons

Science.gov (United States)

Montagna, P.; Hu, X.; Walker, L.; Wetz, M.

2017-12-01

Hurricane Harvey made landfall Friday 25 August 2017 as a Category 4 hurricane, which is the strongest hurricane to hit the middle Texas coast since Carla in 1961. After the wind storm and storm surge, coastal flooding occurred due to the storm lingering over Texas for four more days, dumping as much as 50" of rain near Houston, producing 1:1000 year flood event. The Texas coast is characterized by lagoons behind barrier islands, and their ecology and biogeochemistry are strongly influenced by coastal hydrology. The ensuing inflow event replaced brackish water with fresh water that was high in inorganic an organic matter, significantly enhancing respiration of coastal blue carbon, and dissolved oxygen went to zero for a long period of time. Recovery will likely take months or nearly one year.

Urbanization and agriculture increase exports and differentially alter elemental stoichiometry of dissolved organic matter (DOM) from tropical catchments

DEFF Research Database (Denmark)

Gücker, Björn; Silva, Ricky C. S.; Graeber, Daniel

2016-01-01

, pasture, intensive agriculture, and urban land cover. Streams draining pasture could be distinguished from those draining natural catchments by their lower DOC concentrations, with lower DOM C:N and C:P ratios. Catchments with intensive agriculture had higher DOC exports and lower DOM C:P ratios than...... natural catchments. Finally, with the highest DOC concentrations and exports, as well as the highest DOM C:P and N:P ratios, but the lowest C:N ratios among all land-use types, urbanized catchments had the strongest effects on catchment DOM. Thus, urbanization may have alleviated N limitation...... of heterotrophic DOM decomposition, but increased P limitation. Land use—especially urbanization—also affected the seasonality of catchment biogeochemistry. While natural catchments exhibited high DOC exports and concentrations, with high DOM C:P ratios in the rainy season only, urbanized catchments had high...

Overestimation of organic phosphorus in wetland soils by alkaline extraction and molybdate colorimetry.

Science.gov (United States)

Turner, Benjamin L; Newman, Susan; Reddy, K Ramesh

2006-05-15

Accurate information on the chemical nature of soil phosphorus is essential for understanding its bioavailability and fate in wetland ecosystems. Solution phosphorus-31 nuclear magnetic resonance (31P NMR) spectroscopy was used to assess the conventional colorimetric procedure for phosphorus speciation in alkaline extracts of organic soils from the Florida Everglades. Molybdate colorimetry markedly overestimated organic phosphorus by between 30 and 54% compared to NMR spectroscopy. This was due in large part to the association of inorganic phosphate with organic matter, although the error was exacerbated in some samples by the presence of pyrophosphate, an inorganic polyphosphate that is not detected by colorimetry. The results have important implications for our understanding of phosphorus biogeochemistry in wetlands and suggest that alkaline extraction and solution 31p NMR spectroscopy is the only accurate method for quantifying organic phosphorus in wetland soils.

Using Whole Stream {delta}{sup 15}N Additions to Understand the Effects of Land Use Change on Stream Function

Energy Technology Data Exchange (ETDEWEB)

Deegan, L. A.; Neill, C.; Thomas, S.; Haupert, C. [Marine Biological Laboratory, Woods Hole, MA (United States); Victoria, R. L.; Krusche, A. V.; Ballester, M. V.R. [Centro de Energia Nuclear na Agricultura, Universidade de Sao Paulo, Sao Paulo (Brazil)

2013-05-15

In this paper we introduce an emerging new technique; the use of {delta}{sup 15}N stable isotope tracers to understand both short term and long term alterations in stream ecosystem nitrogen biogeochemistry and food web dynamics. The use of {delta}{sup 15}N isotopes to determine stream nitrogen cycling was developed in small tundra streams in Alaska (USA), but a network of researchers using similar technique has rapidly grown to answer questions about nitrogen cycling and stream food webs in a variety of ecosystem types and subject to human modifications. Here we provide an overview of some of the information that can be provided using stable isotope additions and describe the general approach of an isotope addition experiment. To illustrate the scope of isotope applicability some examples are provided of work undertaken in the Brazilian Amazon. (author)

Piecing together the fragments: Elucidating edge effects on forest carbon dynamics

Science.gov (United States)

Hutyra, L.; Smith, I. A.; Reinmann, A.; Marrs, J.; Thompson, J.

2017-12-01

Forest fragmentation is pervasive throughout the world's forests, impacting growing conditions and carbon dynamics through edge effects that produce gradients in microclimate, biogeochemistry, and stand structure. Despite the majority of the world's forests being biome, but current forest carbon accounting methods and ecosystem models largely do not include edge effects, highlighting an important gap in our understanding of the terrestrial carbon cycle. Characterizing the role of forest fragmentation in regional and global biogeochemical cycles necessitates advancing our understanding of how shifts in microenvironment at the forest edge interact with local prevailing drivers of global change and limitations to microbial activity and forest growth. This study synthesizes the literature related to edge effects and the carbon cycle, considering how fragmentation affects the growing conditions of the world's remaining forests based on risks and opportunities for forests near the edge.

Methanogenesis in the sediment of the acidic Lake Caviahue in Argentina

Science.gov (United States)

Koschorreck, Matthias; Wendt-Potthoff, Katrin; Scharf, Burkhard; Richnow, Hans H.

2008-12-01

The biogeochemistry of methane in the sediments of Lake Caviahue was examined by geochemical analysis, microbial activity assays and isotopic analysis. The pH in the water column was 2.6 and increased up to a pH of 6 in the deeper sediment pore waters. The carbon isotope composition of CH 4 was between - 65 and - 70‰ which is indicative for the biological origin of the methane. The enrichment factor ɛ increased from - 46‰ in the upper sediment column to more than - 80 in the deeper sediment section suggesting a transition from acetoclastic methanogenesis to CO 2 reduction with depth. In the most acidic surface layer of the sediment (pH Copahue Volcano, supported high rates of sulfate reduction which probably raised the pH and created favorable conditions for methanogens in deeper sediment layers.

Morphological and ecological complexity in early eukaryotic ecosystems.

Science.gov (United States)

Javaux, E J; Knoll, A H; Walter, M R

2001-07-05

Molecular phylogeny and biogeochemistry indicate that eukaryotes differentiated early in Earth history. Sequence comparisons of small-subunit ribosomal RNA genes suggest a deep evolutionary divergence of Eukarya and Archaea; C27-C29 steranes (derived from sterols synthesized by eukaryotes) and strong depletion of 13C (a biogeochemical signature of methanogenic Archaea) in 2,700 Myr old kerogens independently place a minimum age on this split. Steranes, large spheroidal microfossils, and rare macrofossils of possible eukaryotic origin occur in Palaeoproterozoic rocks. Until now, however, evidence for morphological and taxonomic diversification within the domain has generally been restricted to very late Mesoproterozoic and Neoproterozoic successions. Here we show that the cytoskeletal and ecological prerequisites for eukaryotic diversification were already established in eukaryotic microorganisms fossilized nearly 1,500 Myr ago in shales of the early Mesoproterozoic Roper Group in northern Australia.

Deposition, persistence and turnover of pollutants: first results from the EU project AquaTerra for selected river basins and aquifers

DEFF Research Database (Denmark)

Barth, J.A.C.; Steidle, D.; Kuntz, D.

2007-01-01

in laboratory studies with soils and aquifer material from selected sites. For sediment transport of contaminants, new flood sampling techniques revealed highest deposition rates of beta-hexachlorocyclohexane (beta-HCH) in river sediments at hotspot areas on the Mulde River in the Bitterfeld region (Elbe Basin...... that range from biogeochemistry, environmental engineering, computer modelling and chemistry to socio-economic sciences. Field study areas are the river basins of the Ebro, the Meuse, the Elbe and the Danube as well as the 3-km(2) French catchment of the Brevilles Spring. Within the first 2 years...... of the project more than 1700 samples of atmospherically deposited particles, sediments, and water have been collected in the above-mentioned systems. Results show clear spatial patterns of deposition of polyaromatic hydrocarbons (PAHs) with the highest rates in the Meuse Basin. For local inputs...

Estimating monotonic rates from biological data using local linear regression.

Science.gov (United States)

Olito, Colin; White, Craig R; Marshall, Dustin J; Barneche, Diego R

2017-03-01

Accessing many fundamental questions in biology begins with empirical estimation of simple monotonic rates of underlying biological processes. Across a variety of disciplines, ranging from physiology to biogeochemistry, these rates are routinely estimated from non-linear and noisy time series data using linear regression and ad hoc manual truncation of non-linearities. Here, we introduce the R package LoLinR, a flexible toolkit to implement local linear regression techniques to objectively and reproducibly estimate monotonic biological rates from non-linear time series data, and demonstrate possible applications using metabolic rate data. LoLinR provides methods to easily and reliably estimate monotonic rates from time series data in a way that is statistically robust, facilitates reproducible research and is applicable to a wide variety of research disciplines in the biological sciences. © 2017. Published by The Company of Biologists Ltd.

Gas Transport and Exchange through Wetland Plant Aerenchyma

DEFF Research Database (Denmark)

Sorrell, Brian Keith; Brix, Hans

2013-01-01

Aerenchyma, the large airspaces in aquatic plants, is a rapid gas transport pathway between atmosphere and soil in wetlands. Oxygen transport aerates belowground tissue and oxidizes rhizosphere soil, an important process in wetland biogeochemistry. Most plant O2 transport occurs by diffusion......, and the major challenge for its accurate measurement is avoiding disturbing small-scale gradients in O2 concentration and demand in the pathway. Small O2 sensors with rapid response times and high spatial resolution are the most popular methods for quantifying O2 transport and rhizosphere oxidation...... such as stirring of solutions. In some species, pressurized gas flows develop in shoots and rhizomes, and their contribution to gas fluxes can be assessed with pressure transducers and flow meters. Other gases produced in wetlands (e.g., CO2, CH4, and N2O) are also transported in aerenchyma. Their fluxes...

Salient Ecological Sensitive Regions of Central Western Ghats, India

Science.gov (United States)

Ramachandra, T. V.; Bharath, Setturu; Subash Chandran, M. D.; Joshi, N. V.

2018-02-01

Ecologically sensitive regions (ESRs) are the `ecological units' with the exceptional biotic and abiotic elements. Identification of ESRs considering spatially both ecological and social dimensions of environmental variables helps in ecological and conservation planning as per Biodiversity Act, 2002, Government of India. The current research attempts to integrate ecological and environmental considerations into administration, and prioritizes regions at Panchayat levels (local administrative unit) in Uttara Kannada district, Central Western Ghats, Karnataka state considering attributes (biological, Geo-climatic, Social, etc.) as ESR (1-4) through weightage score metrics. The region has the distinction of having highest forest area (80.48%) in Karnataka State, India and has been undergoing severe anthropogenic pressures impacting biogeochemistry, hydrology, food security, climate and socio-economic systems. Prioritisation of ESRs helps in the implementation of the sustainable developmental framework with the appropriate conservation strategies through the involvement of local stakeholders.

Under-ice eddy covariance flux measurements of heat, salt, momentum, and dissolved oxygen in an artificial sea ice pool

DEFF Research Database (Denmark)

Else, B. G T; Rysgaard, S.; Attard, K.

2015-01-01

as one possible cause of the high fluxes. Momentum fluxes showed interesting correlations with ice growth and melt but were generally higher than expected. We concluded that with the exception of the conductivity sensor, the eddy covariance system worked well, and that useful information about turbulent......Turbulent exchanges under sea ice play a controlling role in ice mass balance, ice drift, biogeochemistry, and mixed layer modification. In this study, we examined the potential to measure under-ice turbulent exchanges of heat, salt, momentum, and dissolved oxygen using eddy covariance...... in an experimental sea ice facility. Over a 15-day period in January 2013, an underwater eddy covariance system was deployed in a large (500 m3) inground concrete pool, which was filled with artificial seawater and exposed to the ambient (−5 to −30 °C) atmosphere. Turbulent exchanges were measured continuously...

Acidic precipitation, Vol. 1: Case studies. Advances in environmental science

Energy Technology Data Exchange (ETDEWEB)

Adriano, D.C.; Havas, M. (eds.)

1989-01-01

As has been the case with many environmental issues of the twentieth century, acidic precipitation has its origin in emissions to the atmosphere of numerous compounds from both natural and man-made sources. This volume of the subseries Acidic precipitation emphasizes some of the classical interactions between acidic deposition and ecological effects. It covers the cycling, behavior, and effects of acidic components in nature. Included are the effects of acidic deposition on soil chemistry, soil solution chemistry, aquatic chemistry, forest productivity, and fish populations. Several major ecological consequences, such as a decline in forest productivity, soil and water acidification, depletion of fish populations, and slower litter decomposition are highlighted. A chapter is devoted to the comparative biogeochemistry of aluminum, encompassing several ecosystems in North America and Europe. Nine chapters have been processed separately for inclusion in the appropriate data bases.

Salient Ecological Sensitive Regions of Central Western Ghats, India

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Ramachandra, T. V.; Bharath, Setturu; Subash Chandran, M. D.; Joshi, N. V.

2018-05-01

Ecologically sensitive regions (ESRs) are the `ecological units' with the exceptional biotic and abiotic elements. Identification of ESRs considering spatially both ecological and social dimensions of environmental variables helps in ecological and conservation planning as per Biodiversity Act, 2002, Government of India. The current research attempts to integrate ecological and environmental considerations into administration, and prioritizes regions at Panchayat levels (local administrative unit) in Uttara Kannada district, Central Western Ghats, Karnataka state considering attributes (biological, Geo-climatic, Social, etc.) as ESR (1-4) through weightage score metrics. The region has the distinction of having highest forest area (80.48%) in Karnataka State, India and has been undergoing severe anthropogenic pressures impacting biogeochemistry, hydrology, food security, climate and socio-economic systems. Prioritisation of ESRs helps in the implementation of the sustainable developmental framework with the appropriate conservation strategies through the involvement of local stakeholders.

MAUVE: A New Strategy for Solving and Grading Physics Problems

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Hill, Nicole Breanne

2016-05-01

MAUVE (magnitude, answer, units, variables, and equations) is a framework and rubric to help students and teachers through the process of clearly solving and assessing solutions to introductory physics problems. Success in introductory physics often derives from an understanding of units, a command over dimensional analysis, and good bookkeeping. I developed MAUVE for an introductory-level environmental physics course as an easy-to-remember checklist to help students construct organized and thoughtful solutions to physics problems. Environmental physics is a core physics course for environmental and sustainability science (ESS) majors that teaches principles of radiation, thermodynamics, and mechanics within the context of the environment and sustainable energy systems. ESS student concentrations include environmental biology, applied ecology, biogeochemistry, and natural resources. The MAUVE rubric, inspired by nature, has encouraged my students to produce legible and tactical work, and has significantly clarified the grading process.

Response of Soil Biogeochemistry to Freeze-thaw Cycles: Impacts on Greenhouse Gas Emission and Nutrient Fluxes

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Rezanezhad, F.; Parsons, C. T.; Smeaton, C. M.; Van Cappellen, P.

2014-12-01

Freeze-thaw is an abiotic stress applied to soils and is a natural process at medium to high latitudes. Freezing and thawing processes influence not only the physical properties of soil, but also the metabolic activity of soil microorganisms. Fungi and bacteria play a crucial role in soil organic matter degradation and the production of greenhouse gases (GHG) such as CO2, CH4 and N2O. Production and consumption of these atmospheric trace gases are the result of biological processes such as photosynthesis, aerobic respiration (CO2), methanogenesis, methanotrophy (CH4), nitrification and denitrification (N2O). To enhance our understanding of the effects of freeze-thaw cycles on soil biogeochemical transformations and fluxes, a highly instrumented soil column experiment was designed to realistically simulate freeze-thaw dynamics under controlled conditions. Pore waters collected periodically from different depths of the column and solid-phase analyses on core material obtained at the initial and end of the experiment highlighted striking geochemical cycling. CO2, CH4 and N2O production at different depths within the column were quantified from dissolved gas concentrations in pore water. Subsequent emissions from the soil surface were determined by direct measurement in the head space. Pulsed CO2 emission to the headspace was observed at the onset of thawing, however, the magnitude of the pulse decreased with each subsequent freeze-thaw cycle indicating depletion of a "freeze-thaw accessible" carbon pool. Pulsed CO2 emission was due to a combination of physical release of gases dissolved in porewater and entrapped below the frozen zone and changing microbial respiration in response to electron acceptor variability (O2, NO3-, SO42-). In this presentation, we focus on soil-specific physical, chemical, microbial factors (e.g. redox conditions, respiration, fermentation) and the mechanisms that drive GHG emission and nutrient cycling in soils under freeze-thaw cycles.

Biogeochemistry of mercury in contaminated environment in the wider Idrija region and the Gulf of Trieste

International Nuclear Information System (INIS)

Horvat, Milena; Jereb, Vesna; Fajon, Vesna; Lgar, Martina; Faganeli, Jadram; Hines, Mark

2002-01-01

During the reporting period work three main topics have been addressed in order to achieve the objectives of the CRP: 1. Methylmercury formation and degradation in sediments of the Gulf of Trieste. 2. Preparation of SOIL-1 intercomparison sample. 3. Validation of techniques for determination of the rates for methylation and demethylation of mercury in various matrices. The present report covers the first two topics, while the third is presented as a separate manuscript in this report, dealing with methylation of mercury in Isopod Porcellio scaber and in lichens. (author)

Biogeochemistry in highly reduced mussel farm sediments during macrofaunal recolonization by Amphiura filiformis and Nephtys sp.

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Lindqvist, Stina; Norling, Karl; Hulth, Stefan

2009-04-01

Mussel farming is considered a viable means for reducing coastal eutrophication. This study assessed the importance of bioturbation by recolonizing fauna for benthic solute fluxes and porewater distributions in manipulated mussel farm sediments. Three consecutive time-series flux incubations were performed during an experimental period of three weeks in sieved farm sediment treated with the brittle star Amphiura filiformis and the polychaete Nephtys sp. The functional behavior of Nephtys sp. and interactions between Nephtys sp. and the spontaneously colonizing spionid Malacoceros fuliginosus determined the biogeochemical response in the Nephtys sp. treatment. For example, the oxic zone was restricted and benthic nitrate and silicate fluxes were reduced compared to the brittle star treatment. A. filiformis seemed to enhance the bioadvective solute transport, although an increased supply of oxygen was due to the highly reducing conditions of the sediment mainly seen as secondary effects related to porewater distributions and benthic nutrient fluxes.

Biogeochemistry and plant physiological traits interact to reinforce patterns of post-fire dominance in boreal forests

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Shenoy, A.; Kielland, K.; Johnstone, J. F.

2011-12-01

Increases in the frequency, extent, and severity of fire in the North American boreal region are projected to continue under a warming climate and are likely to be associated with changes in future vegetation composition. In interior Alaska, fire severity is linked to the relative dominance of deciduous versus coniferous canopy species. Severely burned areas have high levels of deciduous recruitment and subsequent stand dominance, while lightly burned areas exhibit black spruce self-replacement. To elucidate potential mechanisms by which differential fire severity results in differential post-fire vegetation development, we examined changes in soil nitrogen (N) supply (NO3- and NH4+) and in situ 15N uptake by young aspen (Populus tremuloides) and black spruce (Picea mariana) trees growing in lightly and severely burned areas. We hypothesized that (a) soil nitrate supply would be higher in severely burned sites and (b) since conifers have been shown to have a reduced physiological capacity for NO3- uptake, aspen would display greater rates of NO3- uptake than spruce in severely burned sites. Our results suggested that the composition and magnitude of inorganic N supply 14 years after the fire was nearly identical in high-severity and low-severity sites, and nitrate represented nearly 50% of the supply. However, both aspen and spruce took up substantially more NH4+-N than NO3- -N regardless of fire severity. Surprisingly, spruce exhibited only a moderately lower rate of NO3- uptake (μg N/g root-1h-1) than aspen. At the stand level, aspen took up nearly an order-of-magnitude more N per hectare in severely burned sites compared to lightly burned sites, while spruce exhibited the opposite pattern of N uptake with respect to fire severity. Whereas ammonium appeared to be preferred by both species, nitrate represented a larger component of N uptake (based on the NO3-:NH4+ uptake ratio) in aspen (0.7) than in spruce (0.4). We suggest that these species-specific differences in N preference coupled with their respective physiological response to fire severity represent a positive feedback loop that reinforce the opposing stand dominance patterns that have developed at the two ends of the fire severity spectrum. Shifts in forest composition from the current dominance by conifers to a future landscape dominated by deciduous forest are of concern due to impacts on climate-albedo feedbacks, forest productivity, ecosystem carbon storage, and wildlife habitat use.

The interactive effects of soil transplant into colder regions and cropping on soil microbiology and biogeochemistry.

Science.gov (United States)

Liu, Shanshan; Wang, Feng; Xue, Kai; Sun, Bo; Zhang, Yuguang; He, Zhili; Van Nostrand, Joy D; Zhou, Jizhong; Yang, Yunfeng

2015-03-01

Soil transplant into warmer regions has been shown to alter soil microbiology. In contrast, little is known about the effects of soil transplant into colder regions, albeit that climate cooling has solicited attention in recent years. To address this question, we transplanted bare fallow soil over large transects from southern China (subtropical climate zone) to central (warm temperate climate zone) and northern China (cold temperate climate zone). After an adaptation period of 4 years, soil nitrogen components, microbial biomass and community structures were altered. However, the effects of soil transplant on microbial communities were dampened by maize cropping, unveiling a negative interaction between cropping and transplant. Further statistical analyses with Canonical correspondence analysis and Mantel tests unveiled annual average temperature, relative humidity, aboveground biomass, soil pH and NH4 (+) -N content as environmental attributes closely correlated with microbial functional structures. In addition, average abundances of amoA-AOA (ammonia-oxidizing archaea) and amoA-AOB (ammonia-oxidizing bacteria) genes were significantly (P Microbiology and John Wiley & Sons Ltd.

Biogeochemistry of Dimethylsulfide, Dimethylsulfoniopropionate, and Acrylic Acid in the Changjiang Estuary and the East China Sea

Science.gov (United States)

Wu, Xi; Li, Pei-Feng; Liu, Chun-Ying; Zhang, Hong-Hai; Yang, Gui-Peng; Zhang, Sheng-Hui; Zhu, Mao-Xu

2017-12-01

The distributions of dimethylsulfide (DMS), dimethylsulfoniopropionate (DMSP), and acrylic acid (AA) were investigated in the Changjiang Estuary during winter (dry season) and summer (wet season) 2014 and in the East China Sea (ECS) during summer 2015. The rates of dissolved DMSP (DMSPd) degradation with DMS and AA production, DMS degradation, and AA degradation in the ECS were also studied. Significant seasonal variations in DMS(P) and AA concentrations were observed in the Changjiang Estuary with higher values during the wet season than during the dry season. The maximum ratio of AA/chlorophyll a (Chl a) occurred at the mouth of the Changjiang Estuary due to the combined effects of production from DMSP and terrestrial inputs from the Changjiang Estuary. The distributions of DMS(P) and AA in the ECS were dramatically influenced by the Kuroshio Current and the upwelling caused by the Taiwan Warm Current. The ratios of DMS(P)/Chl a and AA/Chl a exhibited similar patterns in the surface seawater of the ECS, which indicated that phytoplankton species and biomass might play important roles in controlling the distributions of DMS(P) and AA. In vertical profiles, high values of AA emerged in the upper water column and bottom seawater of the Changjiang Estuary. Meanwhile, the maxima of DMS(P) and AA generally appeared in the surface or euphotic layer, whereas their minima arose in the bottom seawater of the ECS. The degradation rates of DMSPd, DMS, and AA in the inshore waters were higher than those in the open sea.

Biogeochemistry of a submerged groundwater seep ecosystem in Lake Huron near karst region of Alpena, MI

Science.gov (United States)

Kinsman-Costello, L. E.; Dick, G.; Sheik, C.; Burton, G. A.; Sheldon, N. D.

2015-12-01

Submerged groundwater seeps in Lake Huron establish ecosystems with distinctive geochemical conditions. In the Middle Island Sinkhole (MIS), a 23-m deep seep, groundwater seepage establishes low O2 (< 4 mg L-1), high sulfate (6 mM) conditions, in which a purple cyanobacteria-dominated mat thrives. The mat is capable of anoxygenic photosynthesis, oxygenic photosynthesis, and chemosynthesis. Within the top 3 cm of the mat-water interface, hydrogen sulfide concentrations increase to 1-7 mM. Little is known about the structure and function of microbes within organic-rich, high-sulfide sediments beneath the mat. Using pore water and sediment geochemical characterization along with microbial community analysis, we elucidated relationships between microbial community structure and ecosystem function along vertical gradients. In sediment pore waters, biologically reactive solutes (SO42-, NH4+, PO43-, and CH4) displayed steep vertical gradients, reflecting biological and geochemical functioning. In contrast, more conservative ions (Ca+2, Mg+2, Na+, and Cl-), did not change significantly with depth in MIS sediments, indicating groundwater influence in the sediment profile. MIS sediments contained more organic matter than typical Lake Huron sediments, and were generally higher in nutrients, metals, and sulfur (acid volatile sulfide). Using the Illumina MiSeq platform we detected 14,127 unique operational taxonomic units across sediment and surface mat samples. Microbial community composition in the MIS was distinctly different from non-groundwater affected areas at similar depth nearby in Lake Huron (ANOSIM, R= 0.74, p=0.002). MIS sediment communities were more diverse that MIS surface mat communities and changed with depth into sediments. MIS sediment community composition was related to several geochemical variables, including organic matter and multiple indicators of phosphorus availability. Elucidating the structure and function of microbial consortia in MIS, a highly unique and environmentally vulnerable ecosystem, provides a rare opportunity to understand relationships between microbial species and their environment and may provide insights into the evolution of life under ancient low-oxygen, high-sulfur conditions.

The biogeochemistry of nutrients, dissolved oxygen and chlorophyll a in the Catalan Sea (NW Mediterranean Sea

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Mariona Segura-Noguera

2016-09-01

Full Text Available Reference depth profiles of dissolved inorganic nutrients, dissolved oxygen and chlorophyll a are described for the Catalan Sea using quality controlled data. Phosphate, nitrate and silicate show typical nutrient profiles, with nutriclines at different depths. Maximums of nitrite, dissolved oxygen and occasionally ammonium are found within the photic zone, close to the deep chlorophyll maximum. In intermediate waters we found a minimum of dissolved oxygen coincident with maximum concentrations of phosphate and nitrate. Ammonium concentration is unexpectedly high in the mesopelagic zone, where there are still measurable nitrite concentrations. The origin of such high ammonium and nitrite concentrations remains unclear. We also identify and describe anomalous data and profiles resulting from eutrophication, western Mediterranean Deep Water formation and dense shelf water cascading. The N:P ratio in deep waters is 22.4, which indicates P limitation relative to the Redfield ratio. However, the N:P ratio above the deep chlorophyll maximum in stratified surface waters is < 4 (< 8 including ammonium. The depth profiles of key biogeochemical variables described in this study will be a useful reference for future studies in the Catalan Sea (NW Mediterranean Sea in order to validate data sampled in this area, to identify anomalous processes, and to study the evolution of the ecosystem following the undergoing global change.

Humic substances-part 7: the biogeochemistry of dissolved organic carbon and its interactions with climate change.

Science.gov (United States)

Porcal, Petr; Koprivnjak, Jean-François; Molot, Lewis A; Dillon, Peter J

2009-09-01

Dissolved organic matter, measured as dissolved organic carbon (DOC), is an important component of aquatic ecosystems and of the global carbon cycle. It is known that changes in DOC quality and quantity are likely to have ecological repercussions. This review has four goals: (1) to discuss potential mechanisms responsible for recent changes in aquatic DOC concentrations; (2) to provide a comprehensive overview of the interactions between DOC, nutrients, and trace metals in mainly boreal environments; (3) to explore the impact of climate change on DOC and the subsequent effects on nutrients and trace metals; and (4) to explore the potential impact of DOC cycling on climate change. We review recent research on the mechanisms responsible for recent changes in aquatic DOC concentrations, DOC interactions with trace metals, N, and P, and on the possible impacts of climate change on DOC in mainly boreal lakes. We then speculate on how climate change may affect DOC export and in-lake processing and how these changes might alter nutrient and metal export and processing. Furthermore, the potential impacts of changing DOC cycling patterns on climate change are examined. It has been noted that DOC concentrations in lake and stream waters have increased during the last 30 years across much of Europe and North America. The potential reasons for this increase include increasing atmospheric CO(2) concentration, climate warming, continued N deposition, decreased sulfate deposition, and hydrological changes due to increased precipitation, droughts, and land use changes. Any change in DOC concentrations and properties in lakes and streams will also impact the acid-base chemistry of these waters and, presumably, the biological, chemical, and photochemical reactions taking place. For example, the interaction of trace metals with DOC may be significantly altered by climate change as organically complexed metals such as Cu, Fe, and Al are released during photo-oxidation of DOC. The production and loss of DOC as CO(2) from boreal lakes may also be affected by changing climate. Climate change is unlikely to be uniform spatially with some regions becoming wetter while others become drier. As a result, rates of change in DOC export and concentrations will vary regionally and the changes may be non-linear. Climate change models predict that higher temperatures are likely to occur over most of the boreal forests in North America, Europe, and Asia over the next century. Climate change is also expected to affect the severity and frequency of storm and drought events. Two general climate scenarios emerge with which to examine possible DOC trends: warmer and wetter or warmer and drier. Increasing temperature and hydrological changes (specifically, runoff) are likely to lead to changes in the quality and quantity of DOC export from terrestrial sources to rivers and lakes as well as changes in DOC processing rates in lakes. This will alter the quality and concentrations of DOC and its constituents as well as its interactions with trace metals and the availability of nutrients. In addition, export rates of nutrients and metals will also change in response to changing runoff. Processing of DOC within lakes may impact climate depending on the extent to which DOC is mineralized to dissolved inorganic carbon (DIC) and evaded to the atmosphere or settles as particulate organic carbon (POC) to bottom sediments and thereby remaining in the lake. The partitioning of DOC between sediments and the atmosphere is a function of pH. Decreased DOC concentrations may also limit the burial of sulfate, as FeS, in lake sediments, thereby contributing acidity to the water by increasing the formation of H(2)S. Under a warmer and drier scenario, if lake water levels fall, previously stored organic sediments may be exposed to greater aeration which would lead to greater CO(2) evasion to the atmosphere. The interaction of trace metals with DOC may be significantly altered by climate change. Iron enhances the formation of POC during irradiation of lake water with UV light and therefore may be an important pathway for transfer of allochthonous DOC to the sediments. Therefore, changing Fe/DOC ratios could affect POC formation rates. If climate change results in altered DOC chemistry (e.g., fewer and/or weaker binding sites) more trace metals could be present in their toxic and bioavailable forms. The availability of nutrients may be significantly altered by climate change. Decreased DOC concentrations in lakes may result in increased Fe colloid formation and co-incident loss of adsorbable P from the water column. Climate change expressed as changes in runoff and temperature will likely result in changes in aquatic DOC quality and concentration with concomitant effects on trace metals and nutrients. Changes in the quality and concentration of DOC have implications for acid-base chemistry and for the speciation and bioavailability of certain trace metals and nutrients. Moreover, changes in DOC, metals, and nutrients are likely to drive changes in rates of C evasion and storage in lake sediments. The key controls on allochthonous DOC quality, quantity, and catchment export in response to climate change are still not fully understood. More detailed knowledge of these processes is required so that changes in DOC and its interactions with nutrients and trace metals can be better predicted based on changes caused by changing climate. More studies are needed concerning the effects of trace metals on DOC, the effects of changing DOC quality and quantity on trace metals and nutrients, and how runoff and temperature-related changes in DOC export affect metal and nutrient export to rivers and lakes.