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Sample records for biogenic feiii minerals

  1. Biogenic Fe(III) minerals lower the efficiency of iron-mineral-based commercial filter systems for arsenic removal.

    Science.gov (United States)

    Kleinert, Susanne; Muehe, Eva M; Posth, Nicole R; Dippon, Urs; Daus, Birgit; Kappler, Andreas

    2011-09-01

    Millions of people worldwide are affected by As (arsenic) contaminated groundwater. Fe(III) (oxy)hydroxides sorb As efficiently and are therefore used in water purification filters. Commercial filters containing abiogenic Fe(III) (oxy)hydroxides (GEH) showed varying As removal, and it was unclear whether Fe(II)-oxidizing bacteria influenced filter efficiency. We found up to 10(7) Fe(II)-oxidizing bacteria/g dry-weight in GEH-filters and determined the performance of filter material in the presence and absence of Fe(II)-oxidizing bacteria. GEH-material sorbed 1.7 mmol As(V)/g Fe and was ~8 times more efficient than biogenic Fe(III) minerals that sorbed only 208.3 μmol As(V)/g Fe. This was also ~5 times more efficient than a 10:1-mixture of GEH-material and biogenic Fe(III) minerals that bound 322.6 μmol As(V)/g Fe. Coprecipitation of As(V) with biogenic Fe(III) minerals removed 343.0 μmol As(V)/g Fe, while As removal by coprecipitation with biogenic minerals in the presence of GEH-material was slightly less efficient as GEH-material only and yielded 1.5 mmol As(V)/g Fe. The present study thus suggests that the formation of biogenic Fe(III) minerals lowers rather than increases As removal efficiency of the filters probably due to the repulsion of the negatively charged arsenate by the negatively charged biogenic minerals. For this reason we recommend excluding microorganisms from filters (e.g., by activated carbon filters) to maintain their high As removal capacity.

  2. Biogenic Fe(III) minerals lower the efficiency of iron-mineral-based commercial filter systems for arsenic removal

    DEFF Research Database (Denmark)

    Kleinert, Susanne; Muehe, Eva M.; Posth, Nicole R.

    2011-01-01

    Millions of people worldwide are affected by As (arsenic) contaminated groundwater. Fe(III) (oxy)hydroxides sorb As efficiently and are therefore used in water purification filters. Commercial filters containing abiogenic Fe(III) (oxy)hydroxides (GEH) showed varying As removal, and it was unclear...

  3. INVESTIGATION OF THE TRANSFORMATION OF URANIUM UNDER IRON-REDUCING CONDITIONS: REDUCTION OF UVI BY BIOGENIC FEII/FEIII HYDROXIDE (GREEN RUST)

    International Nuclear Information System (INIS)

    O'Loughlin, Edward J.; Scherer, Michelle M.; Kemner, Kenneth M.

    2006-01-01

    The recent identification of green rusts (GRs) as products of the reduction of FeIII oxyhydroxides by dissimilatory iron-reducing bacteria, coupled with the ability of synthetic (GR) to reduce UVI species to insoluble UO2, suggests that biogenic green rusts (BioGRs) may play an important role in the speciation (and thus mobility) of U in FeIII-reducing environments. The objective of our research was to examine the potential for BioGR to affect the speciation of U under FeIII-reducing conditions. To meet this objective, we designed and executed a hypothesis-driven experimental program to identify key factors leading to the formation of BioGRs as products of dissimilatory FeIII reduction, to determine the key factors controlling the reduction of UVI to UIV by GRs, and to identify the resulting U-bearing mineral phases. The results of this research significantly increase our understanding of the coupling of biotic and abiotic processes with respect to the speciation of U in iron-reducing environments. In particular, the reduction of UVI to UIV by BioGR with the subsequent formation of U-bearing mineral phases may be effective for immobilizing U in suboxic subsurface environments. This information has direct applications to contaminant transport modeling and bioremediation engineering for natural or enhanced in situ remediation of subsurface contamination

  4. Bacterial iron reduction and biogenic mineral formation for the stabilisation of corroded iron objects.

    Science.gov (United States)

    Kooli, Wafa M; Comensoli, Lucrezia; Maillard, Julien; Albini, Monica; Gelb, Arnaud; Junier, Pilar; Joseph, Edith

    2018-01-15

    Exploiting bacterial metabolism for the stabilisation of corroded iron artefacts is a promising alternative to conventional conservation-restoration methods. Bacterial iron reduction coupled to biogenic mineral formation has been shown to promote the conversion of reactive into stable corrosion products that are integrated into the natural corrosion layer of the object. However, in order to stabilise iron corrosion, the formation of specific biogenic minerals is essential. In this study, we used the facultative anaerobe Shewanella loihica for the production of stable biogenic iron minerals under controlled chemical conditions. The biogenic formation of crystalline iron phosphates was observed after iron reduction in a solution containing Fe(III) citrate. When the same biological treatment was applied on corroded iron plates, a layer composed of iron phosphates and iron carbonates was formed. Surface and cross-section analyses demonstrated that these two stable corrosion products replaced 81% of the reactive corrosion layer after two weeks of treatment. Such results demonstrate the potential of a biological treatment in the development of a stabilisation method to preserve corroded iron objects.

  5. Formation and Reactivity of Biogenic Iron Minerals

    International Nuclear Information System (INIS)

    Ferris, F. Grant

    2002-01-01

    Dissimilatory iron-reducing bacteria (DIRB) play an important role in regulating the aqueous geochemistry of iron and other metals in anaerobic, non-sulfidogenic groundwater environments; however, little work has directly assessed the cell surface electrochemistry of DIRB, or the nature of the interfacial environment around individual cells. The electrochemical properties of particulate solids are often inferred from titrations in which net surface charge is determined, assuming electroneutrality, as the difference between known added amounts of acid and base and measured proton concentration. The resultant titration curve can then be fit to a speciation model for the system to determine pKa values and site densities of reactive surface sites. Moreover, with the development of non-contact electrostatic force microscopy (EFM), it is now possible to directly inspect and quantify charge development on surfaces. A combination of acid-base titrations and EFM are being used to assess the electrochemical surface properties of the groundwater DIRB, Shewanella putrefaciens. The pKa spectra and EFM data show together that a high degree of electrochemical heterogeneity exists within the cell wall and at the cell surface of S. putrefaciens. Recognition of variations in the nature and spatial distribution of reactive sites that contribute to charge development on these bacteria implies further that the cell surface of these Fe(III)-reducing bacteria functions as a highly differentiated interfacial system capable of supporting multiple intermolecular interactions with both solutes and solids. These include surface complexation reactions involving dissolved metals, as well as adherence to mineral substrates such as hydrous ferric oxide through longer-range electrostatic interactions, and surface precipitation of secondary reduced-iron minerals

  6. Sphaerotilus natans encrusted with nanoball-shaped Fe(III) oxide minerals formed by nitrate-reducing mixotrophic Fe(II) oxidation

    Science.gov (United States)

    Park, Sunhwa; Kim, Dong-Hun; Lee, Ji-Hoon; Hur, Hor-Gil

    2014-01-01

    Ferrous iron has been known to function as an electron source for iron-oxidizing microorganisms in both anoxic and oxic environments. A diversity of bacteria has been known to oxidize both soluble and solid-phase Fe(II) forms coupled to the reduction of nitrate. Here, we show for the first time Fe(II) oxidation by Sphaerotilus natans strain DSM 6575T under mixotrophic condition. Sphaerotilus natans has been known to form a sheath structure enclosing long chains of rod-shaped cells, resulting in a thick biofilm formation under oxic conditions. Here, we also demonstrate that strain DSM 6575T grows mixotrophically with pyruvate, Fe(II) as electron donors and nitrate as an electron acceptor and single cells of strain DSM 6575T are dominant under anoxic conditions. Furthermore, strain DSM 6575T forms nanoball-shaped amorphous Fe(III) oxide minerals encrusting on the cell surfaces through the mixotrophic iron oxidation reaction under anoxic conditions. We propose that cell encrustation results from the indirect Fe(II) oxidation by biogenic nitrite during nitrate reduction and that causes the bacterial morphological change to individual rod-shaped single cells from filamentous sheath structures. This study extends the group of existing microorganisms capable of mixotrophic Fe(II) oxidation by a new strain, S. natans strain DSM 6575T, and could contribute to biogeochemical cycles of Fe and N in the environment. PMID:24965827

  7. Bacterial iron reduction and biogenic mineral formation for the stabilisation of corroded iron objects

    OpenAIRE

    Kooli, Wafa M.; Comensoli, Lucrezia; Maillard, Julien; Albini, Monica; Gelb, Arnaud; Junier, Pilar; Joseph, Edith

    2018-01-01

    Exploiting bacterial metabolism for the stabilisation of corroded iron artefacts is a promising alternative to conventional conservation-restoration methods. Bacterial iron reduction coupled to biogenic mineral formation has been shown to promote the conversion of reactive into stable corrosion products that are integrated into the natural corrosion layer of the object. However, in order to stabilise iron corrosion, the formation of specific biogenic minerals is essential. In this study, we u...

  8. From urban municipalities to polar bioremediation: the characterisation and contribution of biogenic minerals for water treatment.

    Science.gov (United States)

    Freidman, Benjamin L; Northcott, Kathy A; Thiel, Peta; Gras, Sally L; Snape, Ian; Stevens, Geoff W; Mumford, Kathryn A

    2017-06-01

    Minerals of biological origin have shown significant potential for the separation of contaminants from water worldwide. This study details the contribution of biologically derived minerals to water treatment operations, with a focus on filtration media from urban municipalities and remote cold regions. The results support biofilm-embedded iron and manganese to be the building blocks of biogenic mineral development on activated carbon and nutrient-amended zeolites. The presence of similar iron and manganese oxidising bacterial species across all filter media supports the analogous morphologies of biogenic minerals between sites and suggests that biological water treatment processes may be feasible across a range of climates. This is the first time the stages of biogenic mineral formation have been aligned with comprehensive imaging of the biofilm community and bacterial identification; especially with respect to cold regions. Where biogenic mineral formation occurs on filter media, the potential exists for enhanced adsorption for a range of organic and inorganic contaminants and improved longevity of filter media beyond the adsorption or exchange capacities of the raw material.

  9. Biogenic iron mineralization at Iron Mountain, CA with implications for detection with the Mars Curiosity rover

    Science.gov (United States)

    Williams, Amy J.; Sumner, Dawn Y.; Alpers, Charles N.; Campbell, Kate M.; Nordstrom, D. Kirk

    2014-01-01

    (Introduction) Microbe-mineral interactions and biosignature preservation in oxidized sulfidic ore bodies (gossans) are prime candidates for astrobiological study. Such oxidized iron systems have been proposed as analogs for some Martian environments. Recent studies identified microbial fossils preserved as mineral-coated filaments. This study documents microbially-mediated mineral biosignatures in hydrous ferric oxide (HFO) and ferric oxyhydroxysulfates (FOHS) in three environments at Iron Mountain, CA. We investigated microbial community preservation via HFO and FOHS precipitation and the formation of filamentous mineral biosignatures. These environments included 1) actively precipitating (1000's yrs), naturally weathered HFO from in situ gossan, and 3) remobilized iron deposits, which contained lithified clastics and zones of HFO precipitate. We used published biogenicity criteria as guidelines to characterize the biogenicity of mineral filaments. These criteria included A) an actively precipitating environment where microbes are known to be coated in minerals, B) presence of extant microbial communities with carbon signatures, C) structures observable as a part of the host rock, and D) biological morphology, including cellular lumina, multiple member population, numerous taxa, variable and 3-D preservation, biological size ranges, uniform diameter, and evidence of flexibility. This study explores the relevance and detection of these biosignatures to possible Martian biosignatures. Similar filamentous biosignatures are resolvable by the Mars Hand Lens Imager (MAHLI) onboard the Mars Science Laboratory (MSL) rover, Curiosity, and may be identifiable as biogenic if present on Mars.

  10. Mineralization of Bacteria in Terrestrial Basaltic Rocks: Comparison With Possible Biogenic Features in Martian Meteorite Allan Hills 84001

    Science.gov (United States)

    Thomas-Keprta, K. L.; McKay, D. S.; Wentworth, S. J.; Stevens, T. O.; Taunton, A. E.; Allen, C. C.; Gibson, E. K., Jr.; Romanek, C. S.

    1998-01-01

    The identification of biogenic features altered by diagenesis or mineralization is important in determining whether specific features in terrestrial rocks and in meteorites may have a biogenic origin. Unfortunately, few studies have addressed the formation of biogenic features in igneous rocks, which may be important to these phenomena, including the controversy over possible biogenic features in basaltic martian meteorite ALH84001. To explore the presence of biogenic features in igneous rocks, we examined microcosms growing in basaltic small-scale experimental growth chambers or microcosms. Microbial communities were harvested from aquifers of the Columbia River Basalt (CRB) group and grown in a microcosm containing unweathered basalt chips and groundwater (technique described in. These microcosms simulated natural growth conditions in the deep subsurface of the CRB, which should be a good terrestrial analog for any putative martian subsurface ecosystem that may have once included ALH84001. Here we present new size measurements and photomicrographs comparing the putative martian fossils to biogenic material in the CRB microcosms. The range of size and shapes of the biogenic features on the CRB microcosm chips overlaps with and is similar to those on ALH84001 chips. Although this present work does not provide evidence for the biogenicity of ALH84001 features, we believe that, based on criteria of size, shape, and general morphology, a biogenic interpretation for the ALH84001 features remains plausible.

  11. Characterization of Biogenic Gas and Mineral Formation Process by Denitrification in Porous Media

    Science.gov (United States)

    Hall, C. A.; Kim, D.; Mahabadi, N.; van Paassen, L. A.

    2017-12-01

    Biologically mediated processes have been regarded and developed as an alternative approach to traditional ground improvement techniques. Denitrification has been investigated as a potential ground improvement process towards liquefaction hazard mitigation. During denitrification, microorganisms reduce nitrate to dinitrogen gas and facilitate calcium carbonate precipitation as a by-product under adequate environmental conditions. The formation of dinitrogen gas desaturates soils and allows for potential pore pressure dampening during earthquake events. While, precipitation of calcium carbonate can improve the mechanical properties by filling the voids and cementing soil particles. As a result of small changes in gas and mineral phases, the mechanical properties of soils can be significantly affected. Prior research has primarily focused on quantitative analysis of overall residual calcium carbonate mineral and biogenic gas products in lab-scale porous media. However, the distribution of these products at the pore-scale has not been well-investigated. In this research, denitrification is activated in a microfluidic chip simulating a homogenous pore structure. The denitrification process is monitored by sequential image capture, where gas and mineral phase changes are evaluated by image processing. Analysis of these images correspond with previous findings, which demonstrate that biogenic gas behaviour at the pore scale is affected by the balance between reaction, diffusion, and convection rates.

  12. Deposition of Biogenic Iron Minerals in a Methane Oxidizing Microbial Mat

    Directory of Open Access Journals (Sweden)

    Christoph Wrede

    2013-01-01

    Full Text Available The syntrophic community between anaerobic methanotrophic archaea and sulfate reducing bacteria forms thick, black layers within multi-layered microbial mats in chimney-like carbonate concretions of methane seeps located in the Black Sea Crimean shelf. The microbial consortium conducts anaerobic oxidation of methane, which leads to the formation of mainly two biomineral by-products, calcium carbonates and iron sulfides, building up these chimneys. Iron sulfides are generated by the microbial reduction of oxidized sulfur compounds in the microbial mats. Here we show that sulfate reducing bacteria deposit biogenic iron sulfides extra- and intracellularly, the latter in magnetosome-like chains. These chains appear to be stable after cell lysis and tend to attach to cell debris within the microbial mat. The particles may be important nuclei for larger iron sulfide mineral aggregates.

  13. Deposition of biogenic iron minerals in a methane oxidizing microbial mat.

    Science.gov (United States)

    Wrede, Christoph; Kokoschka, Sebastian; Dreier, Anne; Heller, Christina; Reitner, Joachim; Hoppert, Michael

    2013-01-01

    The syntrophic community between anaerobic methanotrophic archaea and sulfate reducing bacteria forms thick, black layers within multi-layered microbial mats in chimney-like carbonate concretions of methane seeps located in the Black Sea Crimean shelf. The microbial consortium conducts anaerobic oxidation of methane, which leads to the formation of mainly two biomineral by-products, calcium carbonates and iron sulfides, building up these chimneys. Iron sulfides are generated by the microbial reduction of oxidized sulfur compounds in the microbial mats. Here we show that sulfate reducing bacteria deposit biogenic iron sulfides extra- and intracellularly, the latter in magnetosome-like chains. These chains appear to be stable after cell lysis and tend to attach to cell debris within the microbial mat. The particles may be important nuclei for larger iron sulfide mineral aggregates.

  14. Reduction of structural Fe(III) in nontronite by methanogen Methanosarcina barkeri

    Science.gov (United States)

    Liu, D.; Dong, Hailiang H.; Bishop, M.E.; Wang, Hongfang; Agrawal, A.; Tritschler, S.; Eberl, D.D.; Xie, S.

    2011-01-01

    Clay minerals and methanogens are ubiquitous and co-exist in anoxic environments, yet it is unclear whether methanogens are able to reduce structural Fe(III) in clay minerals. In this study, the ability of methanogen Methanosarcina barkeri to reduce structural Fe(III) in iron-rich smectite (nontronite NAu-2) and the relationship between iron reduction and methanogenesis were investigated. Bioreduction experiments were conducted in growth medium using three types of substrate: H2/CO2, methanol, and acetate. Time course methane production and hydrogen consumption were measured by gas chromatography. M. barkeri was able to reduce structural Fe(III) in NAu-2 with H2/CO2 and methanol as substrate, but not with acetate. The extent of bioreduction, as measured by the 1,10-phenanthroline method, was 7-13% with H2/CO2 as substrate, depending on nontronite concentration (5-10g/L). The extent was higher when methanol was used as a substrate, reaching 25-33%. Methanogenesis was inhibited by Fe(III) reduction in the H2/CO2 culture, but enhanced when methanol was used. High charge smectite and biogenic silica formed as a result of bioreduction. Our results suggest that methanogens may play an important role in biogeochemical cycling of iron in clay minerals and may have important implications for the global methane budget. ?? 2010 Elsevier Ltd.

  15. [Effect of temperature on activity of Acidithiobacillus ferrooxidan and formation of biogenic secondary iron minerals].

    Science.gov (United States)

    Song, Yong-Wei; Zhao, Bo-Wen; Huo, Min-Bo; Cui, Chun-Hong; Zhou, Li-Xiang

    2013-08-01

    In this study, batch experiments were performed to investigate the effect of temperature on the Fe (II) oxidation and the formation of biogenic secondary iron minerals by Acidithiobacillus ferrooxidan. Results showed that the low temperature significantly inhibited the oxidation activity of A. ferrooxidan. In the FeSO4-H2O biological oxidation system facilitated by A. ferrooxidan, it was found that after 5 days culture, the oxidation rates of Fe (II) in treatments of 10 degrees C and 28 degrees C were 11.81% and 100%, respectively. In addition, it rapidly rose to 95.10% when the temperature was adjusted from 10 degrees C (cultured for 7 days) to 28 degrees C in 1 day, and the maximum oxidation rates were as follows: 10 degrees C (cultured for 7 days) +28 degrees C (2.25 h(-1)) > 28 degrees C (1.42 h(-1)) >10 degrees C (0.81 h(-1)). Furthermore, the XRD patterns showed that the lower Fe (III) supply rate was more conducive to the formation of amorphous schwertmannite in 9K medium at 10 degrees C. Correspondingly, the generation of amorphous schwertmannite was preceded to ihleite at 28 degrees C, and the crystallinity degree of ihleite was getting better with the extension of culture time. Combined with the SEM characteristics, it was judged that the 28 degrees C sample contained jarosite and schwertmannite.

  16. Non-enzymatic U(VI) interactions with biogenic mackinawite

    Science.gov (United States)

    Veeramani, H.; Qafoku, N. P.; Kukkadapu, R. K.; Murayama, M.; Hochella, M. F.

    2011-12-01

    Reductive immobilization of hexavalent uranium [U(VI)] by stimulation of dissimilatory metal and/or sulfate reducing bacteria (DMRB or DSRB) has been extensively researched as a remediation strategy for subsurface U(VI) contamination. These bacteria derive energy by reducing oxidized metals as terminal electron acceptors, often utilizing organic substrates as electron donors. Thus, when evaluating the potential for in-situ uranium remediation in heterogeneous subsurface media, it is important to understand how the presence of alternative electron acceptors such as Fe(III) and sulfate affect U(VI) remediation and the long term behavior and reactivity of reduced uranium. Iron, an abundant subsurface element, represents a substantial sink for electrons from DMRB, and the reduction of Fe(III) leads to the formation of dissolved Fe(II) or to reactive biogenic Fe(II)- and mixed Fe(II)/Fe(III)- mineral phases. Consequently, abiotic U(VI) reduction by reactive forms of biogenic Fe(II) minerals could be a potentially important process for uranium immobilization. In our study, the DMRB Shewanella putrefaciens CN32 was used to synthesize a biogenic Fe(II)-bearing sulfide mineral: mackinawite, that has been characterized by XRD, SEM, HRTEM and Mössbauer spectroscopy. Batch experiments involving treated biogenic mackinawite and uranium (50:1 molar ratio) were carried out at room temperature under strict anoxic conditions. Following complete removal of uranium from solution, the biogenic mackinawite was analyzed by a suite of analytical techniques including XAS, HRTEM and Mössbauer spectroscopy to determine the speciation of uranium and investigate concomitant Fe(II)-phase transformation. Determining the speciation of uranium is critical to success of a remediation strategy. The present work elucidates non-enzymatic/abiotic molecular scale redox interactions between biogenic mackinawite and uranium.

  17. Stable silicon isotope signatures of marine pore waters - Biogenic opal dissolution versus authigenic clay mineral formation

    Science.gov (United States)

    Ehlert, Claudia; Doering, Kristin; Wallmann, Klaus; Scholz, Florian; Sommer, Stefan; Grasse, Patricia; Geilert, Sonja; Frank, Martin

    2016-10-01

    Dissolved silicon isotope compositions have been analysed for the first time in pore waters (δ30SiPW) of three short sediment cores from the Peruvian margin upwelling region with distinctly different biogenic opal content in order to investigate silicon isotope fractionation behaviour during early diagenetic turnover of biogenic opal in marine sediments. The δ30SiPW varies between +1.1‰ and +1.9‰ with the highest values occurring in the uppermost part close to the sediment-water interface. These values are of the same order or higher than the δ30Si of the biogenic opal extracted from the same sediments (+0.3‰ to +1.2‰) and of the overlying bottom waters (+1.1‰ to +1.5‰). Together with dissolved silicic acid concentrations well below biogenic opal saturation, our collective observations are consistent with the formation of authigenic alumino-silicates from the dissolving biogenic opal. Using a numerical transport-reaction model we find that approximately 24% of the dissolving biogenic opal is re-precipitated in the sediments in the form of these authigenic phases at a relatively low precipitation rate of 56 μmol Si cm-2 yr-1. The fractionation factor between the precipitates and the pore waters is estimated at -2.0‰. Dissolved and solid cation concentrations further indicate that off Peru, where biogenic opal concentrations in the sediments are high, the availability of reactive terrigenous material is the limiting factor for the formation of authigenic alumino-silicate phases.

  18. Bone toughness at the molecular scale: A model for fracture toughness using crosslinked osteopontin on synthetic and biogenic mineral substrates.

    Science.gov (United States)

    Cavelier, S; Dastjerdi, A K; McKee, M D; Barthelat, F

    2018-02-24

    The most prominent structural components in bone are collagen and mineral. However, bone additionally contains a substantial amount of noncollagenous proteins (most notably of the SIBLING protein family), some of which may act as cohesive/adhesive "binders" for the composite hybrid collagen/mineral scaffolding, whether in the bulk phase of bone, or at its interfaces. One such noncollagenous protein - osteopontin (OPN) - appears to be critical to the deformability and fracture toughness of bone. In the present study, we used a reconstructed synthetic mineral-OPN-mineral interface, and a biogenic (natural tooth dentin) mineral/collagen-OPN-mineral/collagen interface, to measure the fracture toughness of OPN on mineralized substrates. We used this system to test the hypothesis that OPN crosslinking by the enzyme tissue transglutaminase 2 (TG2) that is found in bone enhances interfacial adhesion to increase the fracture toughness of bone. For this, we prepared double-cantilever beam substrates of synthetic pure hydroxyapatite mineral, and of narwhal dentin, and directly apposed them to one another under different intervening OPN/crosslinking conditions, and fracture toughness was tested using a miniaturized loading stage. The work-of-fracture of the OPN interface was measured for different OPN formulations (monomer vs. polymer), crosslinking states, and substrate composition. Noncrosslinked OPN provided negligible adhesion on pure hydroxyapatite, whereas OPN crosslinking (by the chemical crosslinker glutaraldehyde, and TG2 enzyme) provided strong interfacial adhesion for both hydroxyapatite and dentin using monomeric and polymeric OPN. Pre-coating of the substrate beams with monomeric OPN further improved the adhesive performance of the samples, likely by allowing effective binding of this nascent OPN form to mineral/matrix components, with this pre-attachment providing a protein layer for additional crosslinking between the substrates. Copyright © 2018. Published by

  19. Rapid mineralization of biogenic volatile organic compounds in temperate and Arctic soils

    OpenAIRE

    Albers, Christian Nyrop; Kramshøj, Magnus; Rinnan, Riikka

    2018-01-01

    Biogenic volatile organic compounds (BVOCs) are produced by all life forms. Their release into the atmosphere is important with regards to a number of physical and chemical processes and great effort has been put into determining sources and sinks of these compounds in recent years. Soil microbes as a possible sink for BVOCs in the atmosphere has been suggested, however, experimental evidence for this sink is scarce despite its potentially high importance to both carbon cycling and atmospheri...

  20. Nitrogen in biogenic and abiogenic minerals from Paleozoic black shales: an NRA study

    International Nuclear Information System (INIS)

    Gallien, J.-P.; Orberger, B.; Daudin, L.; Pinti, D.L.; Pasava, J.

    2004-01-01

    Nuclear reaction analyses were performed on feldspars, quartz, abiogenic and biogenic sulfides and phosphates in organic matter-rich black shales. The goal was to study N-fractionation in black shales during diagenesis and contemporaneous hydrothermalism. Light elements (N, C) together with heavier ones (K, Ca, Ni, Fe, Zn) were analyzed by PIXE. Due to the heterogeneous sample composition, a scanning mode was used. Each phase was identified before extracting the corresponding spectra for quantification. Six phases, carrying nitrogen (and C), have been identified. K-feldspars are the richest in N (1.0-2.4 wt.%), followed by organic carbon (0.67 wt.%). Quartz, biogenic and abiogenic sulfides and phosphates contain N in the range of 0.56-1.08 wt.%. The present N-distribution in the black shales is explained by a two-step nitrogen release: (1) organic matter decay produces N, P, S nutriments for the development of a hydrothermal vent fauna and (2) biomineralization of this vent fauna liberates nitrogen to early diagenetic fluids. The extreme N enrichment of feldspars is related to its crystal structure, favoring the potassium substitution by NH 4 + , and the N-uptake during organic matter replacement

  1. Bacillus megaterium mediated mineralization of calcium carbonate as biogenic surface treatment of green building materials.

    Science.gov (United States)

    Dhami, Navdeep Kaur; Reddy, M Sudhakara; Mukherjee, Abhijit

    2013-12-01

    Microbially induced calcium carbonate precipitation is a biomineralization process that has various applications in remediation and restoration of range of building materials. In the present study, calcifying bacteria, Bacillus megaterium SS3 isolated from calcareous soil was applied as biosealant to enhance the durability of low energy, green building materials (soil-cement blocks). This bacterial isolate produced high amounts of urease, carbonic anhydrase, extra polymeric substances and biofilm. The calcium carbonate polymorphs produced by B. megaterium SS3 were analyzed by scanning electron microscopy, confocal laser scanning microscopy, X-ray diffraction and Fourier transmission infra red spectroscopy. These results suggested that calcite is the most predominant carbonate formed by this bacteria followed by vaterite. Application of B. megaterium SS3 as biogenic surface treatment led to 40 % decrease in water absorption, 31 % decrease in porosity and 18 % increase in compressive strength of low energy building materials. From the present investigation, it is clear that surface treatment of building materials by B. megaterium SS3 is very effective and eco friendly way of biodeposition of coherent carbonates that enhances the durability of building materials.

  2. Biogenic Weathering: Solubilization of Iron from Minerals by Epilithic Freshwater Algae and Cyanobacteria.

    Science.gov (United States)

    Mustoe, George E

    2018-01-15

    A sandstone outcrop exposed to freshwater seepage supports a diverse assemblage of photosynthetic microbes. Dominant taxa are two cyanophytes ( Oscillatoria sp., Rivularia sp.) and a unicellular green alga ( Palmellococcus sp.). Less abundant taxa include a filamentous green alga, Microspora , and the desmid Cosmarium . Biologic activity is evidenced by measured levels of chlorophyll and lipids. Bioassay methods confirm the ability of these microbes to dissolve and metabolize Fe from ferruginous minerals. Chromatographic analysis reveals citric acid as the likely chelating agent; this low molecular weight organic acid is detectable in interstitial fluid in the sandstone, measured as 0.0756 mg/mL. Bioassays using a model organism, Synechoccus elongates strain UTEX 650, show that Fe availability varies among different ferruginous minerals. In decreasing order of Fe availability: magnetite > limonite > biotite > siderite > hematite. Biotite was selected for detailed study because it is the most abundant iron-bearing mineral in the sandstone. SEM images support the microbiologic evidence, showing weathering of biotite compared to relatively undamaged grains of other silicate minerals.

  3. Marine sulfate-reducing bacteria cause serious corrosion of iron under electroconductive biogenic mineral crust

    Science.gov (United States)

    Enning, Dennis; Venzlaff, Hendrik; Garrelfs, Julia; Dinh, Hang T; Meyer, Volker; Mayrhofer, Karl; Hassel, Achim W; Stratmann, Martin; Widdel, Friedrich

    2012-01-01

    Iron (Fe0) corrosion in anoxic environments (e.g. inside pipelines), a process entailing considerable economic costs, is largely influenced by microorganisms, in particular sulfate-reducing bacteria (SRB). The process is characterized by formation of black crusts and metal pitting. The mechanism is usually explained by the corrosiveness of formed H2S, and scavenge of ‘cathodic’ H2 from chemical reaction of Fe0 with H2O. Here we studied peculiar marine SRB that grew lithotrophically with metallic iron as the only electron donor. They degraded up to 72% of iron coupons (10 mm × 10 mm × 1 mm) within five months, which is a technologically highly relevant corrosion rate (0.7 mm Fe0 year−1), while conventional H2-scavenging control strains were not corrosive. The black, hard mineral crust (FeS, FeCO3, Mg/CaCO3) deposited on the corroding metal exhibited electrical conductivity (50 S m−1). This was sufficient to explain the corrosion rate by electron flow from the metal (4Fe0 → 4Fe2+ + 8e−) through semiconductive sulfides to the crust-colonizing cells reducing sulfate (8e− + SO42− + 9H+ → HS− + 4H2O). Hence, anaerobic microbial iron corrosion obviously bypasses H2 rather than depends on it. SRB with such corrosive potential were revealed at naturally high numbers at a coastal marine sediment site. Iron coupons buried there were corroded and covered by the characteristic mineral crust. It is speculated that anaerobic biocorrosion is due to the promiscuous use of an ecophysiologically relevant catabolic trait for uptake of external electrons from abiotic or biotic sources in sediments. PMID:22616633

  4. Marine sulfate-reducing bacteria cause serious corrosion of iron under electroconductive biogenic mineral crust.

    Science.gov (United States)

    Enning, Dennis; Venzlaff, Hendrik; Garrelfs, Julia; Dinh, Hang T; Meyer, Volker; Mayrhofer, Karl; Hassel, Achim W; Stratmann, Martin; Widdel, Friedrich

    2012-07-01

    Iron (Fe(0) ) corrosion in anoxic environments (e.g. inside pipelines), a process entailing considerable economic costs, is largely influenced by microorganisms, in particular sulfate-reducing bacteria (SRB). The process is characterized by formation of black crusts and metal pitting. The mechanism is usually explained by the corrosiveness of formed H(2) S, and scavenge of 'cathodic' H(2) from chemical reaction of Fe(0) with H(2) O. Here we studied peculiar marine SRB that grew lithotrophically with metallic iron as the only electron donor. They degraded up to 72% of iron coupons (10 mm × 10 mm × 1 mm) within five months, which is a technologically highly relevant corrosion rate (0.7 mm Fe(0) year(-1) ), while conventional H(2) -scavenging control strains were not corrosive. The black, hard mineral crust (FeS, FeCO(3) , Mg/CaCO(3) ) deposited on the corroding metal exhibited electrical conductivity (50 S m(-1) ). This was sufficient to explain the corrosion rate by electron flow from the metal (4Fe(0)  → 4Fe(2+)  + 8e(-) ) through semiconductive sulfides to the crust-colonizing cells reducing sulfate (8e(-)  + SO(4) (2-)  + 9H(+)  → HS(-)  + 4H(2) O). Hence, anaerobic microbial iron corrosion obviously bypasses H(2) rather than depends on it. SRB with such corrosive potential were revealed at naturally high numbers at a coastal marine sediment site. Iron coupons buried there were corroded and covered by the characteristic mineral crust. It is speculated that anaerobic biocorrosion is due to the promiscuous use of an ecophysiologically relevant catabolic trait for uptake of external electrons from abiotic or biotic sources in sediments. © 2012 Society for Applied Microbiology and Blackwell Publishing Ltd.

  5. Confocal Raman microscopy as a tool to describe different mineral and organic phases at high spatial resolution within marine biogenic carbonates: case study on Nerita undata (Gastropoda, Neritopsina)

    Science.gov (United States)

    Nehrke, G.; Nouet, J.

    2011-06-01

    Marine biogenic carbonates formed by invertebrates (e.g. corals and mollusk shells) represent complex composites of one or more mineral phases and organic molecules. This complexity ranges from the macroscopic structures observed with the naked eye down to sub micrometric structures only revealed by micro analytical techniques. Understanding to what extent and how organisms can control the formation of these structures requires that the mineral and organic phases can be identified and their spatial distribution related. Here we demonstrate the capability of confocal Raman microscopy applied to cross sections of a shell of Nerita undata to describe the distribution of calcite and aragonite including their crystallographic orientation with high lateral resolution (∼300 nm). Moreover, spatial distribution of functional groups of organic compounds can be simultaneously acquired, allowing to specifically relate them to the observed microstructures. The data presented in this case study highlights the possible new contributions of this method to the description of modalities of Nerita undata shell formation, and what could be expected of its application to other marine biogenic carbonates. Localization of areas of interest would also allow further investigations using more localized methods, such as TEM that would provide complementary information on the relation between organic molecules and crystallographic lattice.

  6. The effects of borate minerals on the synthesis of nucleic acid bases, amino acids and biogenic carboxylic acids from formamide.

    Science.gov (United States)

    Saladino, Raffaele; Barontini, Maurizio; Cossetti, Cristina; Di Mauro, Ernesto; Crestini, Claudia

    2011-08-01

    The thermal condensation of formamide in the presence of mineral borates is reported. The products afforded are precursors of nucleic acids, amino acids derivatives and carboxylic acids. The efficiency and the selectivity of the reaction was studied in relation to the elemental composition of the 18 minerals analyzed. The possibility of synthesizing at the same time building blocks of both genetic and metabolic apparatuses, along with the production of amino acids, highlights the interest of the formamide/borate system in prebiotic chemistry.

  7. Laboratory tools to quantify biogenic dissolution of rocks and minerals: a model rock biofilm growing in percolation columns

    Directory of Open Access Journals (Sweden)

    Franz eSeiffert

    2016-04-01

    Full Text Available Sub-aerial biofilms (SAB are ubiquitous, self-sufficient microbial ecosystems found on mineral surfaces at all altitudes and latitudes. SABs, which are the principal causes of weathering on exposed terrestrial surfaces, are characterised by patchy growth dominated by associations of algae, cyanobacteria, fungi and heterotrophic bacteria. A recently developed in vitro system to study colonisation of rocks exposed to air included two key SAB participants - the rock-inhabiting ascomycete Knufia petricola (CBS 123872 and the phototrophic cyanobacterium Nostoc punctiforme ATCC29133. Both partners are genetically tractable and we used them here to study weathering of granite, K-feldspar and plagioclase. Small fragments of the various rocks or minerals (1 to 6 mm were packed into flow-through columns and incubated with 0.1% glucose and 10 µM thiamine-hydrochloride (90 µL.min-1 to compare weathering with and without biofilms. Dissolution of the minerals was followed by: analysing (i the degradation products in the effluent from the columns via Inductively Coupled Plasma Spectroscopy and (ii by studying polished sections of the incubated mineral fragment/grains using scanning electron microscopy, transmission electron microscopy and energy dispersive X-ray analyses. K. petricola/N. punctiforme stimulated release of Ca, Na, Mg and Mn. Analyses of the polished sections confirmed depletion of Ca, Na and K near the surface of the fragments. The abrupt decrease in Ca concentration observed in peripheral areas of plagioclase fragments favoured a dissolution-reprecipitation mechanism. Percolation columns in combination with a model biofilm can thus be used to study weathering in closed systems. Columns can easily be filled with different minerals and biofilms, the effluent as well as grains can be collected after long-term exposure under axenic conditions and easily analysed.

  8. Biogenic uraninite precipitation and its reoxidation by iron(III) (hydr)oxides: A reaction modeling approach

    Science.gov (United States)

    Spycher, Nicolas F.; Issarangkun, Montarat; Stewart, Brandy D.; Sevinç Şengör, S.; Belding, Eileen; Ginn, Tim R.; Peyton, Brent M.; Sani, Rajesh K.

    2011-08-01

    One option for immobilizing uranium present in subsurface contaminated groundwater is in situ bioremediation, whereby dissimilatory metal-reducing bacteria and/or sulfate-reducing bacteria are stimulated to catalyze the reduction of soluble U(VI) and precipitate it as uraninite (UO 2). This is typically accomplished by amending groundwater with an organic electron donor. It has been shown, however, that once the electron donor is entirely consumed, Fe(III) (hydr)oxides can reoxidize biogenically produced UO 2, thus potentially impeding cleanup efforts. On the basis of published experiments showing that such reoxidation takes place even under highly reducing conditions (e.g., sulfate-reducing conditions), thermodynamic and kinetic constraints affecting this reoxidation are examined using multicomponent biogeochemical simulations, with particular focus on the role of sulfide and Fe(II) in solution. The solubility of UO 2 and Fe(III) (hydr)oxides are presented, and the effect of nanoscale particle size on stability is discussed. Thermodynamically, sulfide is preferentially oxidized by Fe(III) (hydr)oxides, compared to biogenic UO 2, and for this reason the relative rates of sulfide and UO 2 oxidation play a key role on whether or not UO 2 reoxidizes. The amount of Fe(II) in solution is another important factor, with the precipitation of Fe(II) minerals lowering the Fe +2 activity in solution and increasing the potential for both sulfide and UO 2 reoxidation. The greater (and unintuitive) UO 2 reoxidation by hematite compared to ferrihydrite previously reported in some experiments can be explained by the exhaustion of this mineral from reaction with sulfide. Simulations also confirm previous studies suggesting that carbonate produced by the degradation of organic electron donors used for bioreduction may significantly increase the potential for UO 2 reoxidation through formation of uranyl carbonate aqueous complexes.

  9. The potential impact of microbial Fe(III) reduction on subsurface U(VI) mobility at a low level radioactive waste storage site

    International Nuclear Information System (INIS)

    Wilkins, M.J.; Livens, F.R.; Vaughan, D.J.; Lloyd, J.R.; Beadle, I.; Small, J.S.

    2005-01-01

    Full text of publication follows: Fe(III) oxy-hydroxides have the potential to be utilised as terminal electron acceptors by indigenous microbial communities in the British Nuclear Fuels (BNFL) low level radioactive waste storage site at Drigg (Cumbria, UK) and these organisms may have a critical control on the biogeochemical cycling of several environmentally important radionuclides. In terms of radiological impact at Drigg, uranium is the most significant contributor to radiological impact and it is strongly influenced by biogeochemical processes. In terms of mass (moles) it is also the most abundant radionuclide in the Drigg inventory. Thus, the potential biotic and abiotic effects of Fe(III) reduction on U(VI) mobility in the Drigg subsurface are of interest. Culture-dependent and molecular techniques showed that the sediments in and around the Drigg site contained a diversity of Fe(III)-reducing bacteria. A series of microcosm experiments were utilised to create environmentally relevant experimental conditions. Microcosms set up using Drigg sediment and synthetic ground water were spiked with 100 μM U(VI) and acetate as an electron donor. U(VI) concentrations in groundwater were measured using a chemical assay while total U levels were determined using ICP-MS. Fe(II) levels were determined using the ferrozine method. Sediment surface areas were measured using BET analysis. The low surface area of the sediments resulted in only a small proportion of the 100 μM U(VI) spike sorbing onto mineral surfaces. The addition of ferri-hydrite to some microcosms resulted in an immediate lowering of soluble U(VI) concentrations, suggesting that the formation of soluble U(VI) complexes were not responsible for the minimal adsorption. The presence of biogenic Fe(II) in the microcosms did not affect the soluble U(VI) concentration. Similarly, soluble U(VI) levels remained unchanged when sediments were spiked with U(VI) post-microbial Fe(III) reduction. However, a lowering in

  10. Genetic evidence that induction of root Fe(III) chelate reductase activity is necessary for iron uptake under iron deficiency.

    Science.gov (United States)

    Yi, Y; Guerinot, M L

    1996-11-01

    Reduction of Fe(III) to Fe(II) by Fe(III) chelate reductase is thought to be an obligatory step in iron uptake as well as the primary factor in making iron available for absorption by all plants except grasses. Fe(III) chelate reductase has also been suggested to play a more general role in the regulation of cation absorption. In order to experimentally address the importance of Fe(III) chelate reductase activity in the mineral nutrition of plants, three Arabidopsis thaliana mutans (frd1-1, frd1-2 and frd1-3), that do not show induction of Fe(III) chelate reductase activity under iron-deficient growth conditions, have been isolated and characterized. These mutants are still capable of acidifying the rhizosphere under iron-deficiency and accumulate more Zn and Mn in their shoots relative to wild-type plants regardless of iron status. frd1 mutants do not translocate radiolabeled iron to the shoots when roots are presented with a tightly chelated form of Fe(III). These results: (1) confirm that iron must be reduced before it can be transported, (2) show that Fe(III) reduction can be uncoupled from proton release, the other major iron-deficiency response, and (3) demonstrate that Fe(III) chelate reductase activity per se is not necessarily responsible for accumulation of cations previously observed in pea and tomato mutants with constitutively high levels of Fe(III) chelate reductase activity.

  11. Mixed biogenic and hydrothermal quartz in Permian lacustrine shale of Santanghu Basin, NW China: implications for penecontemporaneous transformation of silica minerals

    Science.gov (United States)

    Jiao, Xin; Liu, Yiqun; Yang, Wan; Zhou, Dingwu; Wang, Shuangshuang; Jin, Mengqi; Sun, Bin; Fan, Tingting

    2018-01-01

    The cycling of various isomorphs of authigenic silica minerals is a complex and long-term process. A special type of composite quartz (Qc) grains in tuffaceous shale of Permian Lucaogou Formation in the sediment-starved volcanically and hydrothermally active intracontinental lacustrine Santanghu rift basin (NW China) is studied in detail to demonstrate such processes. Samples from one well in the central basin were subject to petrographic, elemental chemical, and fluid inclusion analyses. About 200 Qc-bearing laminae are 0.1-2 mm and mainly 1 mm thick and intercalated within tuffaceous shale laminae. The Qc grains occur as framework grains and are dispersed in igneous feldspar-dominated matrix, suggesting episodic accumulation. The Qc grains are bedding-parallel, uniform in size (100 s µm), elongate, and radial in crystal pattern, suggesting a biogenic origin. Qc grains are composed of a core of anhedral microcrystalline quartz and an outer part of subhedral mega-quartz grains, whose edges are composed of small euhedral quartz crystals, indicating multiple episodic processes of recrystallization and overgrowth. Abundance of Al and Ti in quartz crystals and estimated temperature from fluid inclusions in Qc grains indicate that processes are related to hydrothermal fluids. Finally, the Qc grains are interpreted as original silica precipitation in microorganism (algae?) cysts, which were reworked by bottom currents and altered by hydrothermal fluids to recrystalize and overgrow during penecontemporaneous shallow burial. It is postulated that episodic volcanic and hydrothermal activities had changed lake water chemistry, temperature, and nutrient supply, resulting in variations in microorganic productivities and silica cycling. The transformation of authigenic silica from amorphous to well crystallized had occurred in a short time span during shallow burial.

  12. Confocal Raman microscope mapping as a tool to describe different mineral and organic phases at high spatial resolution within marine biogenic carbonates: case study on Nerita undata (Gastropoda, Neritopsina

    Directory of Open Access Journals (Sweden)

    J. Nouet

    2011-12-01

    Full Text Available Marine biogenic carbonates formed by invertebrates (e.g. corals and mollusks represent complex composites of one or more mineral phases and organic molecules. This complexity ranges from the macroscopic structures observed with the naked eye down to sub micrometric structures only revealed by micro analytical techniques. Understanding to what extent and how organisms can control the formation of these structures requires that the mineral and organic phases can be identified and their spatial distribution related. Here we demonstrate the capability of confocal Raman microscopy applied to cross sections of a shell of Nerita undata to describe the distribution of calcite and aragonite including their crystallographic orientation with high lateral resolution (~300 nm. Moreover, spatial distribution of functional groups of organic compounds can be simultaneously acquired, allowing to specifically relate them to the observed microstructures. The data presented in this case study highlights the possible new contributions of this method to the description of modalities of Nerita undata shell formation, and what could be expected of its application to other marine biogenic carbonates. Localization of areas of interest would also allow further investigations using more localized methods, such as TEM that would provide complementary information on the relation between organic molecules and crystal lattice.

  13. Confocal Raman microscope mapping as a tool to describe different mineral and organic phases at high spatial resolution within marine biogenic carbonates: case study on Nerita undata (Gastropoda, Neritopsina)

    Science.gov (United States)

    Nehrke, G.; Nouet, J.

    2011-12-01

    Marine biogenic carbonates formed by invertebrates (e.g. corals and mollusks) represent complex composites of one or more mineral phases and organic molecules. This complexity ranges from the macroscopic structures observed with the naked eye down to sub micrometric structures only revealed by micro analytical techniques. Understanding to what extent and how organisms can control the formation of these structures requires that the mineral and organic phases can be identified and their spatial distribution related. Here we demonstrate the capability of confocal Raman microscopy applied to cross sections of a shell of Nerita undata to describe the distribution of calcite and aragonite including their crystallographic orientation with high lateral resolution (~300 nm). Moreover, spatial distribution of functional groups of organic compounds can be simultaneously acquired, allowing to specifically relate them to the observed microstructures. The data presented in this case study highlights the possible new contributions of this method to the description of modalities of Nerita undata shell formation, and what could be expected of its application to other marine biogenic carbonates. Localization of areas of interest would also allow further investigations using more localized methods, such as TEM that would provide complementary information on the relation between organic molecules and crystal lattice.

  14. Minerals

    Science.gov (United States)

    Minerals are important for your body to stay healthy. Your body uses minerals for many different jobs, including keeping your bones, muscles, heart, and brain working properly. Minerals are also important for making ...

  15. Biogenic iron oxyhydroxide formation at mid-ocean ridge hydrothermal vents: Juan de Fuca Ridge

    Energy Technology Data Exchange (ETDEWEB)

    Toner, Brandy M.; Santelli, Cara M.; Marcus, Matthew A.; Wirth, Richard; Chan, Clara S.; McCollom, Thomas; Bach, Wolfgang; Edwards, Katrina J.

    2008-05-22

    Here we examine Fe speciation within Fe-encrusted biofilms formed during 2-month seafloor incubations of sulfide mineral assemblages at the Main Endeavor Segment of the Juan de Fuca Ridge. The biofilms were distributed heterogeneously across the surface of the incubated sulfide and composed primarily of particles with a twisted stalk morphology resembling those produced by some aerobic Fe-oxidizing microorganisms. Our objectives were to determine the form of biofilm-associated Fe, and identify the sulfide minerals associated with microbial growth. We used micro-focused synchrotron-radiation X-ray fluorescence mapping (mu XRF), X-ray absorption spectroscopy (mu EXAFS), and X-ray diffraction (mu XRD) in conjunction with focused ion beam (FIB) sectioning, and highresolution transmission electron microscopy (HRTEM). The chemical and mineralogical composition of an Fe-encrusted biofilm was queried at different spatial scales, and the spatial relationship between primary sulfide and secondary oxyhydroxide minerals was resolved. The Fe-encrusted biofilms formed preferentially at pyrrhotite-rich (Fe1-xS, 0<_ x<_ 0.2) regions of the incubated chimney sulfide. At the nanometer spatial scale, particles within the biofilm exhibiting lattice fringing and diffraction patterns consistent with 2-line ferrihydrite were identified infrequently. At the micron spatial scale, Fe mu EXAFS spectroscopy and mu XRD measurements indicate that the dominant form of biofilm Fe is a short-range ordered Fe oxyhydroxide characterized by pervasive edge-sharing Fe-O6 octahedral linkages. Double corner-sharing Fe-O6 linkages, which are common to Fe oxyhydroxide mineral structures of 2-line ferrihydrite, 6-line ferrihydrite, and goethite, were not detected in the biogenic iron oxyhydroxide (BIO). The suspended development of the BIO mineral structure is consistent with Fe(III) hydrolysis and polymerization in the presence of high concentrations of Fe-complexing ligands. We hypothesize that

  16. Minerals

    Science.gov (United States)

    ... bit of each one. Trace minerals includes iron, manganese, copper, iodine, zinc, cobalt, fluoride, and selenium. Let's take a closer look at some of the minerals you get from food. Calcium Calcium is the top macromineral when it comes to your bones. This mineral helps build strong bones, so you ...

  17. Bioavailability of Fe(III) in Natural Soils and the Impact on Mobility of Inorganic Contaminants (Final Report)

    Energy Technology Data Exchange (ETDEWEB)

    Kosson, David S. [Vanderbilt Univ., Nashville, TN (United States). Dept. of Civil and Environmental Engineering; Cowan, Robert M. [Rutgers Univ., New Brunswick, NJ (United States). Dept. of Environmental Science; Young, Lily Y. [Rutgers Univ., New Brunswick, NJ (United States). Center for Agriculture and the Environment; Hatcherl, Eric L. [Vanderbilt Univ., Nashville, TN (United States). Dept. of Civil and Environmental Engineering; Scala, David J. [Vanderbilt Univ., Nashville, TN (United States). Dept. of Civil and Environmental Engineering

    2005-08-02

    Inorganic contaminants, such as heavy metals and radionuclides, can adhere to insoluble Fe(III) minerals resulting in decreased mobility of these contaminants through subsurface environments. Dissimilatory Fe(III)-reducing bacteria (DIRB), by reducing insoluble Fe(III) to soluble Fe(II), may enhance contaminant mobility. The Savannah River Site, South Carolina (SRS), has been subjected to both heavy metal and radionuclide contamination. The overall objective of this project is to investigate the release of inorganic contaminants such as heavy metals and radionuclides that are bound to solid phase soil Fe complexes and to elucidate the mechanisms for mobilization of these contaminants that can be associated with microbial Fe(III) reduction. This is being accomplished by (i) using uncontaminated and contaminated soils from SRS as prototype systems, (ii) evaluating the diversity of DIRBs within the samples and isolating cultures for further study, (iii) using batch microcosms to evaluate the bioavailability of Fe(III) from pure minerals and SRS soils, (iv) developing kinetic and mass transfer models that reflect the system dynamics, and (v) carrying out soil column studies to elucidate the dynamics and interactions amongst Fe(III) reduction, remineralization and contaminant mobility.

  18. Mechanisms for Fe(III) oxide reduction in sedimentary environments

    Science.gov (United States)

    Nevin, Kelly P.; Lovely, Derek R.

    2002-01-01

    Although it was previously considered that Fe(III)-reducing microorganisms must come into direct contact with Fe(III) oxides in order to reduce them, recent studies have suggested that electron-shuttling compounds and/or Fe(III) chelators, either naturally present or produced by the Fe(III)-reducing microorganisms themselves, may alleviate the need for the Fe(III) reducers to establish direct contact with Fe(III) oxides. Studies with Shewanella alga strain BrY and Fe(III) oxides sequestered within microporous beads demonstrated for the first time that this organism releases a compound(s) that permits electron transfer to Fe(III) oxides which the organism cannot directly contact. Furthermore, as much as 450 w M dissolved Fe(III) was detected in cultures of S. alga growing in Fe(III) oxide medium, suggesting that this organism releases compounds that can solublize Fe(III) from Fe(III) oxide. These results contrast with previous studies, which demonstrated that Geobacter metallireducens does not produce electron-shuttles or Fe(III) chelators. Some freshwater aquatic sediments and groundwaters contained compounds, which could act as electron shuttles by accepting electrons from G. metallireducens and then transferring the electrons to Fe(III). However, other samples lacked significant electron-shuttling capacity. Spectroscopic studies indicated that the electron-shuttling capacity of the waters was not only associated with the presence of humic substances, but water extracts of walnut, oak, and maple leaves contained electron-shuttling compounds did not appear to be humic substances. Porewater from a freshwater aquatic sediment and groundwater from a petroleum-contaminated aquifer contained dissolved Fe(III) (4-16 w M), suggesting that soluble Fe(III) may be available as an electron acceptor in some sedimentary environments. These results demonstrate that in order to accurately model the mechanisms for Fe(III) reduction in sedimentary environments it will be necessary

  19. The life cycle of iron Fe(III) oxide: impact of fungi and bacteria

    Science.gov (United States)

    Bonneville, Steeve

    2014-05-01

    Iron oxides are ubiquitous reactive constituents of soils, sediments and aquifers. They exhibit vast surface areas which bind a large array of trace metals, nutrients and organic molecules hence controlling their mobility/reactivity in the subsurface. In this context, understanding the "life cycle" of iron oxide in soils is paramount to many biogeochemical processes. Soils environments are notorious for their extreme heterogeneity and variability of chemical, physical conditions and biological agents at play. Here, we present studies investigating the role of two biological agents driving iron oxide dynamics in soils, root-associated fungi (mycorrhiza) and bacteria. Mycorrhiza filaments (hypha) grow preferentially around, and on the surface of nutrient-rich minerals, making mineral-fungi contact zones, hot-spots of chemical alteration in soils. However, because of the microscopic nature of hyphae (only ~ 5 µm wide for up to 1 mm long) and their tendency to strongly adhere to mineral surface, in situ observations of this interfacial micro-environment are scarce. In a microcosm, ectomycorrhiza (Paxillus involutus) was grown symbiotically with a pine tree (Pinus sylvestris) in the presence of freshly-cleaved biotite under humid, yet undersaturated, conditions typical of soils. Using spatially-resolved ion milling technique (FIB), transmission electron microscopy and spectroscopy (TEM/STEM-EDS), synchrotron based X-ray microscopy (STXM), we were able to quantify the speciation of Fe at the biotite-hypha interface. The results shows that substantial oxidation of biotite structural-Fe(II) into Fe(III) subdomains occurs at the contact zone between mycorrhiza and biotite. Once formed, iron(III) oxides can reductively dissolve under suboxic conditions via several abiotic and microbial pathways. In particular, they serve as terminal electron acceptors for the oxidation of organic matter by iron reducing bacteria. We aimed here to understand the role of Fe(III) mineral

  20. Minerals

    Directory of Open Access Journals (Sweden)

    Vaquero, M. P.

    1998-08-01

    Full Text Available The possible changes in the mineral composition of food during frying could be the consequence of losses by leaching, or changes in concentrations caused by exchanges between the food and culinary fat of other compounds. The net result depends on the type of food, the frying fat used and the frying process. Moreover, the modifications that frying produces in other nutrients could indirectly affect the availability of dietary minerals. The most outstanding ones are those that can take place in the fat or in the protein. With respect to the interactions between frying oils and minerals, we have recent knowledge concerning the effects of consuming vegetable oils used in repeated fryings of potatoes without turnover, on the nutritive utilization of dietary minerals. The experiments have been carried out in pregnant and growing rats, which consumed diets containing, as a sole source of fat, the testing frying oils or unused oils. It seems that the consumption of various frying oils, with a polar compound content lower or close to the maximum limit of 25% accepted for human consumption, does not alter the absorption and metabolism of calcium, phosphorous, iron or copper. Magnesium absorption from diets containing frying oils tends to increase but the urinary excretion of this element increases, resulting imperceptible the variations in the magnesium balance. The urinary excretion of Zn also increased although its balance remained unchanged. Different studies referring to the effects of consuming fried fatty fish on mineral bioavailability will also be presented. On one hand, frying can cause structural changes in fish protein, which are associated with an increase in iron absorption and a decrease in body zinc retention. The nutritive utilization of other elements such as magnesium, calcium and copper seems to be unaffected. On the other hand; it has been described that an excess of fish fatty acids in the diet produces iron depletion, but when fatty

  1. Selection of Nutrient Used in Biogenic Healing Agent for Cementitious Materials

    NARCIS (Netherlands)

    Tziviloglou, E.; Wiktor, V.A.C.; Jonkers, H.M.; Schlangen, H.E.J.G.

    2017-01-01

    Biogenic self-healing cementitious materials target on the closure of micro-cracks with precipitated inorganic minerals originating from bacterial metabolic activity. Dormant bacterial spores and organic mineral compounds often constitute a biogenic healing agent. The current paper focuses on the

  2. Biogenic Emission Sources

    Science.gov (United States)

    Biogenic emissions sources come from natural sources and need to accounted for in photochemical grid models. They are computed using a model which utilizes spatial information on vegetation and land use.

  3. Microbial reductive transformation of phyllosilicate Fe(III) and U(VI) in fluvial subsurface sediments.

    Science.gov (United States)

    Lee, Ji-Hoon; Fredrickson, James K; Kukkadapu, Ravi K; Boyanov, Maxim I; Kemner, Kenneth M; Lin, Xueju; Kennedy, David W; Bjornstad, Bruce N; Konopka, Allan E; Moore, Dean A; Resch, Charles T; Phillips, Jerry L

    2012-04-03

    The microbial reduction of Fe(III) and U(VI) was investigated in shallow aquifer sediments collected from subsurface flood deposits near the Hanford Reach of the Columbia River in Washington State. Increases in 0.5 N HCl-extractable Fe(II) were observed in incubated sediments and (57)Fe Mössbauer spectroscopy revealed that Fe(III) associated with phyllosilicates and pyroxene was reduced to Fe(II). Aqueous uranium(VI) concentrations decreased in subsurface sediments incubated in sulfate-containing synthetic groundwater with the rate and extent being greater in sediment amended with organic carbon. X-ray absorption spectroscopy of bioreduced sediments indicated that 67-77% of the U signal was U(VI), probably as an adsorbed species associated with a new or modified reactive mineral phase. Phylotypes within the Deltaproteobacteria were more common in Hanford sediments incubated with U(VI) than without, and in U(VI)-free incubations, members of the Clostridiales were dominant with sulfate-reducing phylotypes more common in the sulfate-amended sediments. These results demonstrate the potential for anaerobic reduction of phyllosilicate Fe(III) and sulfate in Hanford unconfined aquifer sediments and biotransformations involving reduction and adsorption leading to decreased aqueous U concentrations.

  4. Shewanella oneidensis MR-1-Induced Fe(III) Reduction Facilitates Roxarsone Transformation.

    Science.gov (United States)

    Chen, Guowei; Ke, Zhengchen; Liang, Tengfang; Liu, Li; Wang, Gang

    2016-01-01

    Although microbial activity and associated iron (oxy)hydroxides are known in general to affect the environmental dynamics of 4-hydroxy-3-nitrobenzenearsonic acid (roxarsone), the mechanistic understanding of the underlying biophysico-chemical processes remains unclear due to limited experimental information. We studied how Shewanella oneidensis MR-1 -a widely distributed metal-reducing bacterium, in the presence of dissolved Fe(III), affects roxarsone transformations and biogeochemical cycling in a model aqueous system. The results showed that the MR-1 strain was able to anaerobically use roxarsone as a terminal electron acceptor and to convert it to a single product, 3-amino-4-hydroxybenzene arsonic acid (AHBAA). The presence of Fe(III) stimulated roxarsone transformation via MR-1-induced Fe(III) reduction, whereby the resulting Fe(II) acted as an efficient reductant for roxarsone transformation. In addition, the subsequent secondary Fe(III)/Fe(II) mineralization created conditions for adsorption of organoarsenic compounds to the yielded precipitates and thereby led to arsenic immobilization. The study provided direct evidence of Shewanella oneidensis MR-1-induced direct and Fe(II)-associated roxarsone transformation. Quantitative estimations revealed a candidate mechanism for the early-stage environmental dynamics of roxarsone in nature, which is essential for understanding the environmental dynamics of roxarsone and successful risk assessment.

  5. Shewanella oneidensis MR-1-Induced Fe(III Reduction Facilitates Roxarsone Transformation.

    Directory of Open Access Journals (Sweden)

    Guowei Chen

    Full Text Available Although microbial activity and associated iron (oxyhydroxides are known in general to affect the environmental dynamics of 4-hydroxy-3-nitrobenzenearsonic acid (roxarsone, the mechanistic understanding of the underlying biophysico-chemical processes remains unclear due to limited experimental information. We studied how Shewanella oneidensis MR-1 -a widely distributed metal-reducing bacterium, in the presence of dissolved Fe(III, affects roxarsone transformations and biogeochemical cycling in a model aqueous system. The results showed that the MR-1 strain was able to anaerobically use roxarsone as a terminal electron acceptor and to convert it to a single product, 3-amino-4-hydroxybenzene arsonic acid (AHBAA. The presence of Fe(III stimulated roxarsone transformation via MR-1-induced Fe(III reduction, whereby the resulting Fe(II acted as an efficient reductant for roxarsone transformation. In addition, the subsequent secondary Fe(III/Fe(II mineralization created conditions for adsorption of organoarsenic compounds to the yielded precipitates and thereby led to arsenic immobilization. The study provided direct evidence of Shewanella oneidensis MR-1-induced direct and Fe(II-associated roxarsone transformation. Quantitative estimations revealed a candidate mechanism for the early-stage environmental dynamics of roxarsone in nature, which is essential for understanding the environmental dynamics of roxarsone and successful risk assessment.

  6. Fe(III) photocatalytic reduction of Cr(VI) by low-molecular-weight organic acids with α-OH

    International Nuclear Information System (INIS)

    Sun Jun; Mao, J.-D.; Gong Hui; Lan Yeqing

    2009-01-01

    The photochemical reduction of Cr(VI) by four low-molecular-weight organic acids (tartaric acid, citric acid, malic acid, and n-butyric acid) in the presence of either dissolved Fe(III) in dilute aqueous solution or adsorbed Fe(III) on clay mineral surfaces (kaolinite, montmorillonite and illite) was investigated using batch reactors at a pH range from 3.5 to 4.5 at 25 deg. C. The results indicate that Fe(III) photocatalytic reduction of Cr(VI) by organic acids with α-OH is extremely fast. During a reaction period when less than 80% initial Cr(VI) was consumed, the reaction can be described as pseudo-first-order with respect to Cr(VI) when organic acid in excess. By plotting ln[Cr(VI)] as a function of reaction time, rate constants of Cr(VI) reduction by organic acids are obtained. The rate constants involving the four acids are in the order: tartaric acid (with 2 carboxylic groups and 2 α-OH groups) > citric acid (with 3 carboxylic groups and 1 α-OH group) ∼ malic acid (with 2 carboxylic groups and 1 α-OH group) >> n-butyric acid (with 1 carboxylic group and no α-OH group). This order suggests that the number of α-OH but not the number of carboxylic groups is an important determinant of kinetics. With light, the reduction of Cr(VI) by citric acid is accelerated by clay minerals. The enhancement of Cr(VI) reduction is attributed to the catalysis of Fe(III) adsorbed on clay mineral surfaces. However, such an acceleration is markedly suppressed by introducing NaF into the reaction system since NaF forms a complex with Fe(III). It is concluded that the complex formation between Fe(III) and organic acid is a key step for the photocatalytic reduction of Cr(VI) in the presence of Fe(III) and organic acids with α-OH.

  7. Influence of Reactive Transport on the Reduction of U(VI) in the Presence of Fe(III) and Nitrate: Implications for U(VI) Immobilization by Bioremediation/Biobarriers - Final Report

    International Nuclear Information System (INIS)

    B.D. Wood

    2007-01-01

    Subsurface contamination by metals and radionuclides represent some of the most challenging remediation problems confronting the Department of Energy (DOE) complex. In situ remediation of these contaminants by dissimilatory metal reducing bacteria (DMRB) has been proposed as a potential cost effective remediation strategy. The primary focus of this research is to determine the mechanisms by which the fluxes of electron acceptors, electron donors, and other species can be controlled to maximize the transfer of reductive equivalents to the aqueous and solid phases. The proposed research is unique in the NABIR portfolio in that it focuses on (i) the role of flow and transport in the initiation of biostimulation and the successful sequestration of metals and radionuclides [specifically U(VI)], (ii) the subsequent reductive capacity and stability of the reduced sediments produced by the biostimulation process, and (iii) the potential for altering the growth of biomass in the subsurface by the addition of specific metabolic uncoupling compounds. A scientifically-based understanding of these phenomena are critical to the ability to design successful bioremediation schemes. The laboratory research will employ Shewanella putrefaciens (CN32), a facultative DMRB that can use Fe(III) oxides as a terminal electron acceptor. Sediment-packed columns will be inoculated with this organism, and the reduction of U(VI) by the DMRB will be stimulated by the addition of a carbon and energy source in the presence of Fe(III). Separate column experiments will be conducted to independently examine: (1) the importance of the abiotic reduction of U(VI) by biogenic Fe(II); (2) the influence of the transport process on Fe(III) reduction and U(VI) immobilization, with emphasis on methods for controlling the fluxes of aqueous species to maximize uranium reduction; (3) the reductive capacity of biologically-reduced sediments (with respect to re-oxidation by convective fluxes of O2 and NO3-) and

  8. Dissimilatory Fe(III) and Mn(IV) reduction.

    Science.gov (United States)

    Lovley, D R

    1991-06-01

    The oxidation of organic matter coupled to the reduction of Fe(III) or Mn(IV) is one of the most important biogeochemical reactions in aquatic sediments, soils, and groundwater. This process, which may have been the first globally significant mechanism for the oxidation of organic matter to carbon dioxide, plays an important role in the oxidation of natural and contaminant organic compounds in a variety of environments and contributes to other phenomena of widespread significance such as the release of metals and nutrients into water supplies, the magnetization of sediments, and the corrosion of metal. Until recently, much of the Fe(III) and Mn(IV) reduction in sedimentary environments was considered to be the result of nonenzymatic processes. However, microorganisms which can effectively couple the oxidation of organic compounds to the reduction of Fe(III) or Mn(IV) have recently been discovered. With Fe(III) or Mn(IV) as the sole electron acceptor, these organisms can completely oxidize fatty acids, hydrogen, or a variety of monoaromatic compounds. This metabolism provides energy to support growth. Sugars and amino acids can be completely oxidized by the cooperative activity of fermentative microorganisms and hydrogen- and fatty-acid-oxidizing Fe(III) and Mn(IV) reducers. This provides a microbial mechanism for the oxidation of the complex assemblage of sedimentary organic matter in Fe(III)- or Mn(IV)-reducing environments. The available evidence indicates that this enzymatic reduction of Fe(III) or Mn(IV) accounts for most of the oxidation of organic matter coupled to reduction of Fe(III) and Mn(IV) in sedimentary environments. Little is known about the diversity and ecology of the microorganisms responsible for Fe(III) and Mn(IV) reduction, and only preliminary studies have been conducted on the physiology and biochemistry of this process.

  9. Influence of Biogenically Produced Fe(II) and Humic Acid Analogs on the Fate of 2,4,6-Trinitrotoluene (TNT)

    Science.gov (United States)

    Borch, T.; Gerlach, R.; Cunningham, A. B.; Peyton, B. M.; Apel, W. A.

    2002-12-01

    Pollution of soil and groundwater with explosives, such as TNT, is a well-known environmental problem. Obviously, a precise risk assessment and evaluation of appropriate remediation strategies of TNT require a fundamental understanding of the processes that govern the transformation of TNT in the subsurface. Recently a number of novel Gram positive metal-reducing bacteria were isolated from enrichments of subsurface soils from Cr(VI) contaminated and uncontaminated zones at the US Department of Energy's Hanford site. In contrast to most known metal-reducing bacteria such as Geobacter spp. and Shewanella spp. the isolates were predominantly Gram-positive and 16S rDNA and phospholipid analysis indicated that the isolates predominantly belonged to commonly observed soil bacteria of the genus Cellulomonas. These isolates proved to be capable of Cr(VI), U(VI), dissolved Fe(III), goethite, maghemite, magnetite, hematite, and hydrous ferric oxide (HFO) reduction. Reduced solid phase iron can mediate the degradation of nitroaromatics, halogenated solvents, azo compounds, arsenate, and other important contaminants. Consequently, batch experiments were conducted with Fe(III) minerals (namely, HFO and Magnetite) to investigate the impact of biogenically produced Fe(II) on the fate of TNT. The humic acid analog anthraquinone-2,6-disulfonate (AQDS), can be reduced by Cellulomonas spp. and was included in these studies because of its ability to function as an electron shuttle between the Fe(III) minerals and the bacterial cell during microbial iron reduction. The work to be presented systematically investigates how different factors control the rate and extent of TNT reduction reactions as well as the mechanisms involved. Anaerobic batch studies show the fastest and most complete reduction of TNT in the presence of HFO and the humic analog AQDS. However, we also observe TNT removal by Cellulomonas in the absence of HFO and AQDS with similar TNT reduction rates but with the

  10. Microbiological evidence for Fe(III) reduction on early Earth

    Science.gov (United States)

    Vargas, Madeline; Kashefi, Kazem; Blunt-Harris, Elizabeth L.; Lovley, Derek R.

    1998-09-01

    It is generally considered that sulphur reduction was one of the earliest forms of microbial respiration, because the known microorganisms that are most closely related to the last common ancestor of modern life are primarily anaerobic, sulphur-reducing hyperthermophiles. However, geochemical evidence indicates that Fe(III) is more likely than sulphur to have been the first external electron acceptor of global significance in microbial metabolism. Here we show that Archaea and Bacteria that are most closely related to the last common ancestor can reduce Fe(III) to Fe(II) and conserve energy to support growth from this respiration. Surprisingly, even Thermotoga maritima, previously considered to have only a fermentative metabolism, could grow as a respiratory organism when Fe(III) was provided as an electron acceptor. These results provide microbiological evidence that Fe(III) reduction could have been an important process on early Earth and suggest that microorganisms might contribute to Fe(III) reduction in modern hot biospheres. Furthermore, our discovery that hyperthermophiles that had previously been thought to require sulphur for cultivation can instead be grown without the production of toxic and corrosive sulphide, should aid biochemical investigations of these poorly understood organisms.

  11. Particle Aggregation During Fe(III) Bioreduction in Nontronite

    Science.gov (United States)

    Jaisi, D. P.; Dong, H.; Hi, Z.; Kim, J.

    2005-12-01

    This study was performed to evaluate the rate and mechanism of particle aggregation during bacterial Fe (III) reduction in different size fractions of nontronite and to investigate the role of different factors contributing to particle aggregation. To achieve this goal, microbial Fe(III) reduction experiments were performed with lactate as an electron donor, Fe(III) in nontronite as an electron acceptor, and AQDS as an electron shuttle in bicarbonate buffer using Shewanella putrefaceins CN32. These experiments were performed with and without Na- pyrophosphate as a dispersant in four size fractions of nontronite (0.12-0.22, 0.41-0.69, 0.73-0.96 and 1.42-1.8 mm). The rate of nontronite aggregation during the Fe(III) bioreduction was measured by analyzing particle size distribution using photon correlation spectroscopy (PCS) and SEM images analysis. Similarly, the changes in particle morphology during particle aggregation were determined by analyses of SEM images. Changes in particle surface charge were measured with electrophoretic mobility analyzer. The protein and carbohydrate fraction of EPS produced by cells during Fe(III) bioreduction was measured using Bradford and phenol-sulfuric acid extraction method, respectively. In the presence of the dispersant, the extent of Fe(III) bioreduction was 11.5-12.2% within the first 56 hours of the experiment. There was no measurable particle aggregation in control experiments. The PCS measurements showed that the increase in the effective diameter (95% percentile) was by a factor of 3.1 and 1.9 for particle size of 0.12-0.22 mm and 1.42-1.80 mm, respectively. The SEM image analyses also gave the similar magnitude of increase in particle size. In the absence of the dispersant, the extent of Fe(III) bioreduction was 13.4-14.5% in 56 hours of the experiment. The rate of aggregation was higher than that in the presence of the dispersant. The increase in the effective diameter (95% percentile) was by a factor of 13.6 and 4.1 for

  12. Impact of Fe(III)-OM complexes and Fe(III) polymerization on SOM pools reactivity under different land uses

    Science.gov (United States)

    Giannetta, B.; Plaza, C.; Zaccone, C.; Siebecker, M. G.; Rovira, P.; Vischetti, C.; Sparks, D. L.

    2017-12-01

    Soil organic matter (SOM) protection and long-term accumulation are controlled by adsorption to mineral surfaces in different ways, depending on its molecular structure and pedo-climatic conditions. Iron (Fe) oxides are known to be key regulators of the soil carbon (C) cycle, and Fe speciation in soils is highly dependent on environmental conditions and chemical interactions with SOM. However, the molecular structure and hydrolysis of Fe species formed in association with SOM is still poorly described. We hypothesize the existence of two pools of Fe which interact with SOM: mononuclear Fe(III)-SOM complexes and precipitated Fe(III) hydroxides. To verify our hypothesis, we investigated the interactions between Fe(III) and physically isolated soil fractions by means of batch experiments at pH 7. Specifically, we examined the fine silt plus clay (FSi+C) fraction, obtained by ultrasonic dispersion and wet sieving. The soil samples spanned several land uses, including coniferous forest (CFS), grassland (GS), technosols (TS) and agricultural (AS) soils. Solid phase products and supernatants were analyzed for C and Fe content. X-ray diffraction (XRD) and Brunauer-Emmett-Teller (BET) analysis were also performed. Attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR) was used to assess the main C functional groups involved in C complexation and desorption experiments. Preliminary linear combination fitting (LCF) of Fe K-edge extended X-ray absorption fine structure (EXAFS) spectra suggested the formation of ferrihydrite-like polymeric Fe(III) oxides in reacted CFS and GS samples, with higher C and Fe concentration. Conversely, mononuclear Fe(III) OM complexes dominated the speciation for TS and AS samples, characterized by lower C and Fe concentration, inhibiting the hydrolysis and polymerization of Fe (III). This approach will help revealing the mechanisms by which SOM pools can control Fe(III) speciation, and will elucidate how both Fe

  13. Humic substance-mediated Fe(III) reduction by a fermenting Bacillus strain from the alkaline gut of a humus-feeding scarab beetle larva.

    Science.gov (United States)

    Hobbie, Sven N; Li, Xiangzhen; Basen, Mirko; Stingl, Ulrich; Brune, Andreas

    2012-06-01

    Humus-feeding macroinvertebrates play an important role in the transformation of soil organic matter. Their diet contains significant amounts of redox-active components such as iron minerals and humic substances. In soil-feeding termites, acid-soluble Fe(III) and humic acids are almost completely reduced during gut passage. Here, we show that the reduction of Fe(III) and humic acids takes place also in the alkaline guts of scarab beetle larvae. Sterilized gut homogenates of Pachnoda ephippiata no longer converted Fe(III) to Fe(II), indicating an essential role of the gut microbiota in the process. From Fe(III)-reducing enrichment cultures inoculated with highly diluted gut homogenates, we isolated several facultatively anaerobic, alkali-tolerant bacteria that were closely related to metal-reducing isolates in the Bacillus thioparans group. Strain PeC11 showed a remarkable capacity for dissimilatory Fe(III) reduction, both at pH 7 and 10. Rates were strongly stimulated by the addition of the redox mediator 2,6-antraquinone disulfonate and by redox-active components in the fulvic-acid fraction of humus. Although the contribution of strain PeC11 to intestinal Fe(III) reduction in P. ephippiata remains to be further elucidated, our results corroborate the hypothesis that the lack of oxygen and the solubilization of humic substances in the extremely alkaline guts of humivorous soil fauna provide favorable conditions for the efficient reduction of Fe(III) and humic substances by a primarily fermentative microbiota. Copyright © 2012 Elsevier GmbH. All rights reserved.

  14. Reductive immobilization of U(VI) in Fe(III) oxide-reducing subsurface sediments: Analysis of coupled microbial-geochemical processes in experimental reactive transport systems. Final Scientific/Technical Report-EMSP 73914

    International Nuclear Information System (INIS)

    Eric E. Roden Matilde M. Urrutia Mark O. Barnett Clifford R. Lange

    2005-01-01

    (VI) reduction is likely to be less efficient in natural soils and sediments than would be inferred from studies with synthetic Fe(III) oxides. A key implication of these findings is that production of Fe(II)-enriched sediments during one-time (or periodic) stimulation of DMRB activity is not likely to permit efficient long-term abiotic conversion of U(VI) to U(IV) in biogenic redox barriers designed to prevent far-field subsurface U(VI) migration. Instead our results suggest that ongoing DMRB activity will be required to achieve maximal U(VI) reduction efficiency, and emphasize the need for detailed understanding of patterns of DMRB growth, colonization, and maintenance in physically and chemically heterogeneous subsurface environments in order to predict the effectiveness of subsurface U(VI) bioremediation operations. A final ''capstone'' aspect of experimental work on the project was to examine the potential for sustained coupled Fe(III) oxide and U(VI) reduction in experimental flow-through reactor systems (i.e. sediment columns and ''semicontinuous culture'' systems) that are conceptually analogous to hydrologically-open subsurface environments. The results conclusively demonstrated the potential for sustained removal of U(VI) from solution via DMRB activity in excess of the U(VI) sorption capacity of the natural mineral assemblages as determined in abiotic controls. In addition, the abundance of sorbed U(VI) (a potential long-term source of U(VI) to the aqueous phase) was much lower in the biotic vs. abiotic systems. The latter results agree with other project findings which demonstrated the capacity for G. sulfurreducens to reduce sorbed U(VI). Throughout the project we have developed and refined a variety of reaction-based models of coupled Fe(III) oxide/U(VI) reduction, including a generalized model which accounts for the population dynamics of various respiratory microbial functional groups. These models have been employed in numerical simulations of both batch bench

  15. Electron transfer and atom exchange between aqueous Fe(II) and structural Fe(III) in clays. Role in U and Hg(II) transformations

    Energy Technology Data Exchange (ETDEWEB)

    Scherer, Michelle [Univ. of Iowa, Iowa City, IA (United States)

    2016-08-31

    During this project, we investigated Fe electron transfer and atom exchange between aqueous Fe(II) and structural Fe(III) in clay minerals. We used selective chemical extractions, enriched Fe isotope tracer experiments, computational molecular modeling, and Mössbauer spectroscopy. Our findings indicate that structural Fe(III) in clay minerals is reduced by aqueous Fe(II) and that electron transfer occurs when Fe(II) is sorbed to either basal planes and edge OH-groups of clay mineral. Findings from highly enriched isotope experiments suggest that up to 30 % of the Fe atoms in the structure of some clay minerals exhanges with aqueous Fe(II). First principles calculations using a small polaron hopping approach suggest surprisingly fast electron mobility at room temperature in a nontronite clay mineral and are consistent with temperature dependent Mössbauer data Fast electron mobility suggests that electrons may be able to conduct through the mineral fast enough to enable exchange of Fe between the aqueous phase and clay mineral structure. over the time periods we observed. Our findings suggest that Fe in clay minerals is not as stable as previously thought.

  16. Biogenic Emission Inventory System (BEIS)

    Science.gov (United States)

    Biogenic Emission Inventory System (BEIS) estimates volatile organic compound (VOC) emissions from vegetation and nitric oxide (NO) emission from soils. Recent BEIS development has been restricted to the SMOKE system

  17. Hydropower's Biogenic Carbon Footprint.

    Science.gov (United States)

    Scherer, Laura; Pfister, Stephan

    2016-01-01

    Global warming is accelerating and the world urgently needs a shift to clean and renewable energy. Hydropower is currently the largest renewable source of electricity, but its contribution to climate change mitigation is not yet fully understood. Hydroelectric reservoirs are a source of biogenic greenhouse gases and in individual cases can reach the same emission rates as thermal power plants. Little is known about the severity of their emissions at the global scale. Here we show that the carbon footprint of hydropower is far higher than previously assumed, with a global average of 173 kg CO2 and 2.95 kg CH4 emitted per MWh of electricity produced. This results in a combined average carbon footprint of 273 kg CO2e/MWh when using the global warming potential over a time horizon of 100 years (GWP100). Nonetheless, this is still below that of fossil energy sources without the use of carbon capture and sequestration technologies. We identified the dams most promising for capturing methane for use as alternative energy source. The spread among the ~1500 hydropower plants analysed in this study is large and highlights the importance of case-by-case examinations.

  18. Hydropower's Biogenic Carbon Footprint.

    Directory of Open Access Journals (Sweden)

    Laura Scherer

    Full Text Available Global warming is accelerating and the world urgently needs a shift to clean and renewable energy. Hydropower is currently the largest renewable source of electricity, but its contribution to climate change mitigation is not yet fully understood. Hydroelectric reservoirs are a source of biogenic greenhouse gases and in individual cases can reach the same emission rates as thermal power plants. Little is known about the severity of their emissions at the global scale. Here we show that the carbon footprint of hydropower is far higher than previously assumed, with a global average of 173 kg CO2 and 2.95 kg CH4 emitted per MWh of electricity produced. This results in a combined average carbon footprint of 273 kg CO2e/MWh when using the global warming potential over a time horizon of 100 years (GWP100. Nonetheless, this is still below that of fossil energy sources without the use of carbon capture and sequestration technologies. We identified the dams most promising for capturing methane for use as alternative energy source. The spread among the ~1500 hydropower plants analysed in this study is large and highlights the importance of case-by-case examinations.

  19. Measurement of carbon storage in landfills from the biogenic carbon content of excavated waste samples.

    Science.gov (United States)

    De la Cruz, Florentino B; Chanton, Jeffrey P; Barlaz, Morton A

    2013-10-01

    Landfills are an anaerobic ecosystem and represent the major disposal alternative for municipal solid waste (MSW) in the U.S. While some fraction of the biogenic carbon, primarily cellulose (Cel) and hemicellulose (H), is converted to carbon dioxide and methane, lignin (L) is essentially recalcitrant. The biogenic carbon that is not mineralized is stored within the landfill. This carbon storage represents a significant component of a landfill carbon balance. The fraction of biogenic carbon that is not reactive in the landfill environment and therefore stored was derived for samples of excavated waste by measurement of the total organic carbon, its biogenic fraction, and the remaining methane potential. The average biogenic carbon content of the excavated samples was 64.6±18.0% (average±standard deviation), while the average carbon storage factor was 0.09±0.06g biogenic-C stored per g dry sample or 0.66±0.16g biogenic-C stored per g biogenic C. Published by Elsevier Ltd.

  20. Biogenic and non-biogenic Si pools in terrestrial ecosystems: results from a novel analysis method

    Science.gov (United States)

    Barao, Lucia; Vandevenne, Floor; Clymans, Wim; Meire, Patrick; Frings, Patrick; Conley, Daniel; Struyf, Eric

    2015-04-01

    Silicon (Si) is a chemical element frequently associated with highly abundant silicate minerals in the Earth crust. Over millions of years, the interaction of such minerals with the atmosphere and hydrosphere produces a myriad of processed compounds, and the mineral weathering consumes CO2 during the process. The weathering of minerals also triggers the export of dissolved Si (DSi) to coastal waters and the ocean. Here, DSi is deposited in diatom frustules, in an amorphous biogenic form (BSi). Diatoms account for 50% of the primary production and are crucial for the export of carbon into the deep sea. In recent years, it was acknowledged that terrestrial systems filter the Si transition from the terrestrial mineral to the marine and coastal biological pool, by the incorporation of DSi into plants. In this process, DSi is taken up by roots together with other nutrients and precipitates in plant cells in amorphous structures named phytoliths. After dead, plant tissues become mixed in the top soil, where BSi is available for dissolution and will control the DSi availability in short time scales. Additionally, Si originated from soil forming processes can also significantly interfere with the global cycle. The Si cycle in terrestrial ecosystems is a key factor to coastal ecology, plant ecology, biogeochemistry and agro-sciences, but the high variability of different biogenic and non-biogenic Si pools remains as an obstacle to obtain accurate measurements. The traditional methods, developed to isolate diatoms in ocean sediments, only account for simple mineral corrections. In this dissertation we have adapted a novel continuous analysis method (during alkaline extraction) that uses Si-Al ratios and reactivity to differ biogenic from non-biogenic fractions. The method was originally used in marine sediments, but we have developed it to be applicable in a wide range of terrestrial, aquatic and coastal ecosystems. We first focused on soils under strong human impact in

  1. Rapid anaerobic benzene oxidation with a variety of chelated Fe(III) forms

    Science.gov (United States)

    Lovley, D.R.; Woodward, J.C.; Chapelle, F.H.

    1996-01-01

    Fe(III) chelated to such compounds as EDTA, N-methyliminodiacetie acid, ethanol diglycine, humic acids, and phosphates stimulated benzene oxidation coupled to Fe(III) reduction in anaerobic sediments from a petroleum- contaminated aquifer as effectively as or more effectively than nitrilotriacetic acid did in a previously demonstrated stimulation experiment. These results indicate that many forms of chelated Fe(III) might be applicable to aquifer remediation.

  2. Mechanisms for chelator stimulation of microbial Fe(III) -oxide reduction

    Science.gov (United States)

    Lovley, D.R.; Woodward, J.C.

    1996-01-01

    The mechanisms by which nitrilotriacetic acid (NTA) stimulated Fe(III) reduction in sediments from a petroleum-contaminated aquifer were investigated in order to gain insight into how added Fe(III) chelators stimulate the activity of hydrocarbon-degrading, Fe(III)-reducing microorganisms in these sediments, and how naturally occurring Fe(III) chelators might promote Fe(III) reduction in aquatic sediments. NTA solubilized Fe(III) from the aquifer sediments. NTA stimulation of microbial Fe(III) reduction did not appear to be the result of making calcium, magnesium, potassium, or trace metals more available to the microorganisms. Stimulation of Fe(III) reduction could not be attributed to NTA serving as a source of carbon or fixed nitrogen for Fe(III)-reducing bacteria as NTA was not degraded in the sediments. Studies with the Fe(III)-reducing microorganism, Geobacter metallireducens, and pure Fe(III)-oxide forms, demonstrated that NTA stimulated the reduction of a variety of Fe(III) forms, including highly crystalline Fe(III)-oxides such as goethite and hematite. The results suggest that NTA solubilization of insoluble Fe(III)-oxide is an important mechanism for the stimulation of Fe(III) reduction by NTA in aquifer sediments.

  3. Mineralogical and Biogenic Composition of the Zanzibar Channel Sediments, Tanzania

    Science.gov (United States)

    Shaghude, Y. W.; Wannäs, K. O.

    2000-10-01

    Sediments from the Zanzibar Channel have been analysed for mineralogical and biogenic composition. The main objective of the study was to describe the depositional environment of the sediments based on these parameters. The study was also conducted to give an insight into sediment provenance of the sediments. Quartz, feldspar (both microcline and plagioclase) and hornblende are the main mineralogical components, while zircon, muscovite, biotite and augite occur as accessory minerals. The quartz grains are generally angular to sub-angular and highly strained, indicative of immature sediments, probably derived from highly metamorphosed rocks. The presence of hornblende also supports the conclusion that the sediments are immature. A possible source is the metamorphic rocks of the Mozambique belt, located about 25-50 km from the coastline. Benthic foraminifera are the dominant biogenic constituents. Other common biogenic constituents are molluscs (pelecypods and gastropods) and corals. Bryozoans and ostracods are relatively less common, while sea urchins are accessory biogenic components. The composition and abundance of these biogenic components and morphological, sedimentological and mineralogical data permit construction of a simple model which distinguishes between three bio-physiographic settings in the Zanzibar Channel using depth contours: (1) the coastal zone (0-10 m depth); (2) the reef platform/patch reefs zone (10-20 m depth) and (3) the central channel zone (>20 cm depth). In the coastal zone, the sediments are dominated by fine sand, sized with a very prominent fine sand mode. The proportion of benthic foraminifera is lower than in the other two zones (25%). Two lithogenic mineral components (quartz and feldspar) occur in significant proportions. In the reef platform/patch reefs zone, the sediments are coarse to medium sand sized with no distinct mode. the proportion of benthic foraminifera is highest (80-85%) there, and so is the biogenic:quartz ratio

  4. Global comparison reveals biogenic weathering as driven by nutrient limitation at ecosystem scale

    Science.gov (United States)

    Boy, Jens; Godoy, Roberto; Dechene, Annika; Shibistova, Olga; Amir, Hamid; Iskandar, Issi; Fogliano, Bruno; Boy, Diana; McCulloch, Robert; Andrino, Alberto; Gschwendtner, Silvia; Marin, Cesar; Sauheitl, Leopold; Dultz, Stefan; Mikutta, Robert; Guggenberger, Georg

    2017-04-01

    A substantial contribution of biogenic weathering in ecosystem nutrition, especially by symbiotic microorganisms, has often been proposed, but large-scale in vivo studies are still missing. Here we compare a set of ecosystems spanning from the Antarctic to tropical forests for their potential biogenic weathering and its drivers. To address biogenic weathering rates, we installed mineral mesocosms only accessible for bacteria and fungi for up to 4 years, which contained freshly broken and defined nutrient-baring minerals in soil A horizons of ecosystems along a gradient of soil development differing in climate and plant species communities. Alterations of the buried minerals were analyzed by grid-intersection, confocal lascer scanning microscopy, energy-dispersive X-ray spectroscopy, and X-ray photoelectron spectroscopy on the surface and on thin sections. On selected sites, carbon fluxes were tracked by 13C labeling, and microbial community was identified by DNA sequencing. In young ecosystems (protosoils) biogenic weathering is almost absent and starts after first carbon accumulation by aeolian (later litter) inputs and is mainly performed by bacteria. With ongoing soil development and appearance of symbiotic (mycorrhized) plants, nutrient availability in soil increasingly drove biogenic weathering, and fungi became the far more important players than bacteria. We found a close relation between fungal biogenic weathering and available potassium across all 16 forested sites in the study, regardless of the dominant mycorrhiza type (AM or EM), climate, and plant-species composition. We conclude that nutrient limitations at ecosystem scale are generally counteracted by adapted fungal biogenic weathering. The close relation between fungal weathering and plant-available nutrients over a large range of severely contrasting ecosystems points towards a direct energetic support of these weathering processes by the photoautotrophic community, making biogenic weathering a

  5. Control of Fe(III) site occupancy on the rate and extent of microbial reduction of Fe(III) in nontronite

    Science.gov (United States)

    Jaisi, Deb P.; Kukkadapu, R.K.; Eberl, D.D.; Dong, H.

    2005-01-01

    A quantitative study was performed to understand how Fe(III) site occupancy controls Fe(III) bioreduction in nontronite by Shewanella putrefaciens CN32. NAu-1 and NAu-2 were nontronites and contained Fe(III) in different structural sites with 16 and 23% total iron (w/w), respectively, with almost all iron as Fe(III). Mo??ssbauer spectroscopy showed that Fe(III) was present in the octahedral site in NAu-1 (with a small amount of goethite), but in both the tetrahedral and the octahedral sites in NAu-2. Mo??ssbauer data further showed that the octahedral Fe(III) in NAu-2 existed in at least two environments- trans (M1) and cis (M2) sites. The microbial Fe(III) reduction in NAu-1 and NAu-2 was studied in batch cultures at a nontronite concentration of 5 mg/mL in bicarbonate buffer with lactate as the electron donor. The unreduced and bioreduced nontronites were characterized by X-ray diffraction (XRD), Mo??ssbauer spectroscopy, and transmission electron microscopy (TEM). In the presence of an electron shuttle, anthraquinone-2,6-disulfonate (AQDS), the extent of bioreduction was 11%-16% for NAu-1 but 28%-32% for NAu-2. The extent of reduction in the absence of AQDS was only 5%-7% for NAu-1 but 14%-18% for NAu-2. The control experiments with heat killed cells and without cells did not show any appreciable reduction (medium without added nutrients, possibly due to presence of naturally existing nutrients in the nontronite clays. These results suggest that crystal chemical environment of Fe(III) is an important determinant in controlling the rate and extent of microbial reduction of Fe(III) in nontronite. Copyright ?? 2005 Elsevier Ltd.

  6. STRUCTURE OF Co(III) AND Fe(III) TRANSITION METAL IONS IN ...

    African Journals Online (AJOL)

    Bulletin of the Chemical Society of Ethiopia ... The hydration structures of Co(III) and Fe(III) ions have been investigated by Metropolis Monte Carlo (MC) simulations using only ion-water pair interaction ... KEY WORDS: Metropolis Monte Carlo simulation, Hydration structure, Fe(III) and Co(III) ions, Three-body corrections

  7. Mineral transformations associated with goethite reduction by Methanosarcina barkeri

    Science.gov (United States)

    Liu, D.; Wang, Hongfang; Dong, H.; Qiu, X.; Dong, X.; Cravotta, C.A.

    2011-01-01

    To investigate the interaction between methanogens and iron-containing minerals in anoxic environments, we conducted batch culture experiments with Methanosarcina barkeri in a phosphate-buffered basal medium (PBBM) to bioreduce structural Fe(III) in goethite with hydrogen as the sole substrate. Fe(II) and methane concentrations were monitored over the course of the bioreduction experiments with wet chemistry and gas chromatography, respectively. Subsequent mineralogical changes were characterized with X-ray diffraction (XRD) and scanning electron microscopy (SEM). In the presence of an electron shuttle anthraquinone-2,6-disulfonate (AQDS), 30% Fe(III) in goethite (weight basis) was reduced to Fe(II). In contrast, only 2% Fe(III) (weight basis) was bioreduced in the absence of AQDS. Most of the bioproduced Fe(II) was incorporated into secondary minerals including dufr??nite and vivianite. Our data implied a dufr??nite-vivianite transformation mechanism where a metastable dufr??nite transformed to a more stable vivianite over extended time in anaerobic conditions. Methanogenesis was greatly inhibited by bioreduction of goethite Fe(III). These results have important implications for the methane flux associated with Fe(III) bioreduction and ferrous iron mineral precipitation in anaerobic soils and sediments. ?? 2011 Elsevier B.V.

  8. Biogenic Amines in Insect Antennae

    Directory of Open Access Journals (Sweden)

    Marianna I. Zhukovskaya

    2017-06-01

    Full Text Available Insect antenna is a multisensory organ, each modality of which can be modulated by biogenic amines. Octopamine (OA and its metabolic precursor tyramine (TA affect activity of antennal olfactory receptor neurons. There is some evidence that dopamine (DA modulates gustatory neurons. Serotonin can serve as a neurotransmitter in some afferent mechanosensory neurons and both as a neurotransmitter and neurohormone in efferent fibers targeted at the antennal vessel and mechanosensory organs. As a neurohormone, serotonin affects the generation of the transepithelial potential by sensillar accessory cells. Other possible targets of biogenic amines in insect antennae are hygro- and thermosensory neurons and epithelial cells. We suggest that the insect antenna is partially autonomous in the sense that biologically active substances entering its hemolymph may exert their effects and be cleared from this compartment without affecting other body parts.

  9. Unconventional shallow biogenic gas systems

    Science.gov (United States)

    Shurr, G.W.; Ridgley, J.L.

    2002-01-01

    Unconventional shallow biogenic gas falls into two distinct systems that have different attributes. Early-generation systems have blanketlike geometries, and gas generation begins soon after deposition of reservoir and source rocks. Late-generation systems have ringlike geometries, and long time intervals separate deposition of reservoir and source rocks from gas generation. For both types of systems, the gas is dominantly methane and is associated with source rocks that are not thermally mature. Early-generation biogenic gas systems are typified by production from low-permeability Cretaceous rocks in the northern Great Plains of Alberta, Saskatchewan, and Montana. The main area of production is on the southeastern margin of the Alberta basin and the northwestern margin of the Williston basin. The huge volume of Cretaceous rocks has a generalized regional pattern of thick, non-marine, coarse clastics to the west and thinner, finer grained marine lithologies to the east. Reservoir rocks in the lower part tend to be finer grained and have lower porosity and permeability than those in the upper part. Similarly, source beds in the units have higher values of total organic carbon. Patterns of erosion, deposition, deformation, and production in both the upper and lower units are related to the geometry of lineament-bounded basement blocks. Geochemical studies show that gas and coproduced water are in equilibrium and that the fluids are relatively old, namely, as much as 66 Ma. Other examples of early-generation systems include Cretaceous clastic reservoirs on the southwestern margin of Williston basin and chalks on the eastern margin of the Denver basin. Late-generation biogenic gas systems have as an archetype the Devonian Antrim Shale on the northern margin of the Michigan basin. Reservoir rocks are fractured, organic-rich black shales that also serve as source rocks. Although fractures are important for production, the relationships to specific geologic structures are

  10. Extracellular Proteins Limit the Dispersal of BiogenicNanoparticles

    Energy Technology Data Exchange (ETDEWEB)

    Moreau, John W.; Weber, Peter K.; Martin, Michael C.; Gilbert,Benjamin; Hutcheon, Ian D.; Banfield, Jillian F.

    2007-04-27

    High spatial-resolution secondaryion microprobespectrometry, synchrotron radiation Fourier-transform infraredspectroscopy and polyacrylamide gel analysis demonstrate the intimateassociation of proteins with spheroidal aggregates of biogenic zincsulfide nanocrystals, an example of extracellular biomineralization.Experiments involving synthetic ZnS nanoparticles and representativeamino acids indicate a driving role for cysteine in rapid nanoparticleaggregation. These findings suggest that microbially-derivedextracellular proteins can limit dispersal of nanoparticulatemetal-bearing phases, such as the mineral products of bioremediation,that may otherwise be transported away from their source by subsurfacefluid flow.

  11. [Advances in researches of biogenic molluscicides].

    Science.gov (United States)

    Xue, Li; Jian-Rong, Dai; Yun-Tian, Xing

    2017-01-05

    Biogenic molluscicides refer to the use of plants, animals and micro-organisms or their metabolites, and synthesis biomimetic molluscicides to kill Oncomelania hupensis snails. With the rapid development of science and technology, new biogenic molluscicides are continuously emerging and the category also continues to expand. According to the molluscicidal active ingredient and sources, at present, the biogenic molluscicides with in-depth studies include plant-derived molluscicides, micro-organism molluscicides, microbial metabolite molluscicides and animal molluscicides. This paper reviews the advances in the researches of biogenic molluscicides in recent years.

  12. Framework for Assessing Biogenic CO2 Emissions from Stationary Sources

    Science.gov (United States)

    This revision of the 2011 report, Accounting Framework for Biogenic CO2 Emissions from Stationary Sources, evaluates biogenic CO2 emissions from stationary sources, including a detailed study of the scientific and technical issues associated with assessing biogenic carbon dioxide...

  13. Dissimilatory Reduction of Cr(VI), Fe(III), and U(VI) by Cellulomonas Isolates

    Energy Technology Data Exchange (ETDEWEB)

    Smith, William Aaron; Apel, William Arnold; Peyton, B. M.; Petersen, J. N.; Sani, R.

    2002-10-01

    The reduction of Cr(VI), Fe(III), and U(VI) was studied using three recently isolated environmental Cellulomonas sp. (WS01, WS18, and ES5) and a known Cellulomonas strain (Cellulomonas flavigena ATCC 482) under anaerobic, non-growth conditions. In all cases, these cultures were observed to reduce Cr(VI), Fe(III), and U(VI). In 100 h, with lactate as electron donor, the Cellulomonas isolates (500 mg/l total cell protein) reduced nitrilotriacetic acid chelated Fe(III) [Fe(III)-NTA] from 5 mM to less than 2.2 mM, Cr(VI) from 0.2 mM to less than 0.001 mM, and U(VI) from 0.2 mM to less than 0.12 mM. All Cellulomonas isolates also reduced Cr(VI), Fe(III), and U(VI) in the absence of lactate, while no metal reduction was observed in either the cell-free or heat-killed cell controls. This is the first report of Cellulomonas sp. reducing Fe(III) and U(VI). Further, this is the first report of Cellulomonas spp. coupling the oxidation of lactate, or other unknown electron donors in the absence of lactate, to the reduction of Cr(VI), Fe(III), and U(VI).

  14. Dissimilatory reduction of Cr(VI), Fe(III), and U(VI) by Cellulomonas isolates.

    Science.gov (United States)

    Sani, R K; Peyton, B M; Smith, W A; Apel, W A; Petersen, J N

    2002-10-01

    The reduction of Cr(VI), Fe(III), and U(VI) was studied using three recently isolated environmental Cellulomonas sp. (WS01, WS18, and ES5) and a known Cellulomonas strain ( Cellulomonas flavigena ATCC 482) under anaerobic, non-growth conditions. In all cases, these cultures were observed to reduce Cr(VI), Fe(III), and U(VI). In 100 h, with lactate as electron donor, the Cellulomonas isolates (500 mg/l total cell protein) reduced nitrilotriacetic acid chelated Fe(III) [Fe(III)-NTA] from 5 mM to less than 2.2 mM, Cr(VI) from 0.2 mM to less than 0.001 mM, and U(VI) from 0.2 mM to less than 0.12 mM. All Cellulomonas isolates also reduced Cr(VI), Fe(III), and U(VI) in the absence of lactate, while no metal reduction was observed in either the cell-free or heat-killed cell controls. This is the first report of Cellulomonas sp. reducing Fe(III) and U(VI). Further, this is the first report of Cellulomonas spp. coupling the oxidation of lactate, or other unknown electron donors in the absence of lactate, to the reduction of Cr(VI), Fe(III), and U(VI).

  15. Intolerance to dietary biogenic amines : a review

    NARCIS (Netherlands)

    Jansen, SC; van Dusseldorp, M; Bottema, KC; Dubois, AEJ

    Objective: To evaluate the scientific evidence for purported intolerance to dietary biogenic amines. Data Sources: MEDLINE was searched for articles in the English language published between January 1966 and August 2001. The keyword biogenic amin* was combined with hypersens*, allergen intoler*, and

  16. Intolerance to dietary biogenic amines: A review

    NARCIS (Netherlands)

    Jansen, S.C.; Dusseldorp, M. van; Bottema, K.C.; Dubois, A.E.J.

    2003-01-01

    Objective: To evaluate the scientific evidence for purported intolerance to dietary biogenic amines. Data Sources: MEDLINE was searched for articles in the English language published between January 1966 and August 2001. The keyword biogenic amin* was combined with hypersens*, allerg*, intoler*, and

  17. Degeneration of biogenic superparamagnetic magnetite.

    Science.gov (United States)

    Li, Y-L; Pfiffner, S M; Dyar, M D; Vali, H; Konhauser, K; Cole, D R; Rondinone, A J; Phelps, T J

    2009-01-01

    Magnetite crystals precipitated as a consequence of Fe(III) reduction by Shewanella algae BrY after 265 h incubation and 5-year anaerobic storage were investigated with transmission electron microscopy, Mössbauer spectroscopy and X-ray diffraction. The magnetite crystals were typically superparamagnetic with an approximate size of 13 nm. The lattice constants of the 265 h and 5-year crystals are 8.4164A and 8.3774A, respectively. The Mössbauer spectra indicated that the 265 h magnetite had excess Fe(II) in its crystal-chemistry (Fe(3+) (1.990)Fe(2+) (1.015)O(4)) but the 5-year magnetite was Fe(II)-deficient in stoichiometry (Fe(3+) (2.388)Fe(2+) (0.419)O(4)). Such crystal-chemical changes may be indicative of the degeneration of superparamagnetic magnetite through the aqueous oxidization of Fe(II) anaerobically, and the concomitant oxidation of the organic phases (fatty acid methyl esters) that were present during the initial formation of the magnetite. The observation of a corona structure on the aged magnetite corroborates the anaerobic oxidation of Fe(II) on the outer layers of magnetite crystals. These results suggest that there may be a possible link between the enzymatic activity of the bacteria and the stability of Fe(II)-excess magnetite, which may help explain why stable nano-magnetite grains are seldom preserved in natural environments.

  18. Degeneration of Biogenic Superparamagnetic Magnetite

    Energy Technology Data Exchange (ETDEWEB)

    Li, Dr. Yi-Liang [University of Tennessee, Knoxville (UTK); Pfiffner, Susan M. [University of Tennessee, Knoxville (UTK); Dyar, Dr. M Darby [Mount Holyoke College; Vali, Dr. Hojatolah [McGill University, Montreal, Quebec; Konhauser, Dr, Kurt [University of Alberta; Cole, David R [ORNL; Rondinone, Adam Justin [ORNL; Phelps, Tommy Joe [ORNL

    2009-01-01

    ABSTRACT. Magnetite crystals precipitated as a consequence of Fe(III) reduction by Shewanella algae BrY after 265 hours incubation and 5-year storage were investigated with transmission electron microscopy, M ssbauer spectroscopy and X-ray diffraction. The magnetite crystals were typically superparamagnetic with an approximate size of 13 nm. The lattice constants of the 265 hour and 5-year crystals are 8.4164 and 8.3774 , respectively. The M ssbauer spectra indicated that the 265 hour magnetite had excess Fe(II) in its crystal-chemistry (Fe3+1.9901Fe2+ 1.0149O4) but the 5-year magnetite was Fe(II)-deficient in stoichiometry (Fe3+2.3875Fe2+0.4188O4). Such crystal-hemical changes may be indicative of the degeneration of superparamagnetic magnetite through the aqueous oxidization of Fe(II) anaerobically, and the concomitant oxidation of the organic phases(fatty acid methyl esters) that were present during the initial formation of the magnetite. The observation of a corona structure on the aged magnetite corroborates the oxidation of Fe(II) on the outer layers of magnetite crystals. These results suggest that there may be a possible link between the enzymatic activity of the bacteria and the stability of Fe(II)-excess magnetite, which may help explain why stable nano-magnetite grains are seldom preserved in natural environments.

  19. Microbial reduction of structural iron in interstratified illite-smectite minerals by a sulfate-reducing bacterium.

    Science.gov (United States)

    Liu, D; Dong, H; Bishop, M E; Zhang, J; Wang, H; Xie, S; Wang, S; Huang, L; Eberl, D D

    2012-03-01

    Clay minerals are ubiquitous in soils, sediments, and sedimentary rocks and could coexist with sulfate-reducing bacteria (SRB) in anoxic environments, however, the interactions of clay minerals and SRB are not well understood. The objective of this study was to understand the reduction rate and capacity of structural Fe(III) in dioctahedral clay minerals by a mesophilic SRB, Desulfovibrio vulgaris and the potential role in catalyzing smectite illitization. Bioreduction experiments were performed in batch systems, where four different clay minerals (nontronite NAu-2, mixed-layer illite-smectite RAr-1 and ISCz-1, and illite IMt-1) were exposed to D. vulgaris in a non-growth medium with and without anthraquinone-2,6-disulfonate (AQDS) and sulfate. Our results demonstrated that D. vulgaris was able to reduce structural Fe(III) in these clay minerals, and AQDS enhanced the reduction rate and extent. In the presence of AQDS, sulfate had little effect on Fe(III) bioreduction. In the absence of AQDS, sulfate increased the reduction rate and capacity, suggesting that sulfide produced during sulfate reduction reacted with the phyllosilicate Fe(III). The extent of bioreduction of structural Fe(III) in the clay minerals was positively correlated with the percentage of smectite and mineral surface area of these minerals. X-ray diffraction, and scanning and transmission electron microscopy results confirmed formation of illite after bioreduction. These data collectively showed that D. vulgaris could promote smectite illitization through reduction of structural Fe(III) in clay minerals. © 2011 Blackwell Publishing Ltd.

  20. Transformation of Strontium during formation of biogenic calcium carbonate

    Science.gov (United States)

    Ohnuki, T.; Kozai, N.; Sakamoto, F.; Yamashita, M.; Horiieke, T.; Utsunomiya, S.

    2016-12-01

    Some amounts of radionuclides contaminated water containing 90Sr generated in the Fukushima Daiichi Nuclear Power Plant were leaked to sea water in the port. One of the possible method to eliminate 90Sr is co-precipitated with biogenic carbonates minerals (CCM). Specific bacteria are known to form biogenic CCM in groundwater. In the present study, we have screened specific bacterium to form CCM in saline water, and studied transformation of Sr during biogenic CCM. A marine microbe of strain TK2d, which is screened from Tokyo bay to form CCM in saline solution, was grown in the medium solution contained urea and Sr. The concentratuion of Sr2+ in the solution was monitored by ICP-OES (ICP-OES; 720 Agilent Technologies, Inc., USA) during the formation of biogenic CCM. The precipitates were analyzed by SEM, TEM, and XAFS. When 1.0 mM Sr was dissolved in the medium solution, the concentration of Sr decreased up to 0.02 mM within 10 days, indicating that most of Sr in the solution was eliminated within 10 days. SEM and TEM analyses showed that needle shaped CCM containing Ca and Sr were formed. The CCM was not single crystalline, but poly-crystalline of calcite and aragonite. The elemental mapping showed that Sr was present at the same position of Ca, indicating that Sr was coprecipitated with Ca. The XANES analysis of Sr in the precipitates showed that the XANES spectrum was not the same as that of Sr coprecipitated with an abiotic Ca carbonates. Linear combination fitting of XANES spectra by those of SrCl2 and SrCO3 showed that both Sr2+ and SrCO3 were present in CCM. Longer contact time resulted in higher content of SrCO3, indicating that Sr was incorporated gradually with time into CCM structure. Thus, Sr was changed its chemical species from adsorbed one to the incorporated one in biogenic CCM in saline solution. This work was partially supported by a research grant from the Japan Science and Technology Agency, Japan (research grant No. 260502).

  1. Role of microbial Fe(III) reduction and solution chemistry in aggregation and settling of suspended particles in the Mississippi River Delta plain, Louisiana, USA

    Science.gov (United States)

    Jaisi, Deb P.; Ji, Shanshan; Dong, Hailiang; Blake, Ruth E.; Eberl, Dennis D.; Kim, Jinwook

    2008-01-01

    River-dominated delta areas are primary sites of active biogeochemical cycling, with productivity enhanced by terrestrial inputs of nutrients. Particle aggregation in these areas primarily controls the deposition of suspended particles, yet factors that control particle aggregation and resulting sedimentation in these environments are poorly understood. This study was designed to investigate the role of microbial Fe(III) reduction and solution chemistry in aggregation of suspended particles in the Mississippi Delta. Three representative sites along the salinity gradient were selected and sediments were collected from the sediment-water interface. Based on quantitative mineralogical analyses 88–89 wt.% of all minerals in the sediments are clays, mainly smectite and illite. Consumption of SO42− and the formation of H2S and pyrite during microbial Fe(III) reduction of the non-sterile sediments by Shewanella putrefaciens CN32 in artificial pore water (APW) media suggest simultaneous sulfate and Fe(III) reduction activity. The pHPZNPC of the sediments was ≤3.5 and their zeta potentials at the sediment-water interface pH (6.9–7.3) varied from −35 to −45 mV, suggesting that both edges and faces of clay particles have negative surface charge. Therefore, high concentrations of cations in pore water are expected to be a predominant factor in particle aggregation consistent with the Derjaguin-Landau-Verwey-Overbeek (DLVO) theory. Experiments on aggregation of different types of sediments in the same APW composition revealed that the sediment with low zeta potential had a high rate of aggregation. Similarly, addition of external Fe(II) (i.e. not derived from sediments) was normally found to enhance particle aggregation and deposition in all sediments, probably resulting from a decrease in surface potential of particles due to specific Fe(II) sorption. Scanning and transmission electron microscopy (SEM, TEM) images showed predominant face-to-face clay aggregation in

  2. Simultaneous Fe(III) reduction and ammonia oxidation process in Anammox sludge.

    Science.gov (United States)

    Li, Xiang; Huang, Yong; Liu, Heng-Wei; Wu, Chuan; Bi, Wei; Yuan, Yi; Liu, Xin

    2018-02-01

    In recent years, there have been a number of reports on the phenomenon in which ferric iron (Fe(III)) is reduced to ferrous iron [Fe(II)] in anaerobic environments, accompanied by simultaneous oxidation of ammonia to NO 2 - , NO 3 - , or N 2. However, studies on the relevant reaction characteristics and mechanisms are rare. Recently, in research on the effect of Fe(III) on the activity of Anammox sludge, excess ammonia oxidization has also been found. Hence, in the present study, Fe(III) was used to serve as the electron acceptor instead of NO 2 - , and the feasibility and characteristics of Anammox coupled to Fe(III) reduction (termed Feammox) were investigated. After 160days of cultivation, the conversion rate of ammonia in the reactor was above 80%, accompanied by the production of a large amount of NO 3 - and a small amount of NO 2 - . The total nitrogen removal rate was up to 71.8%. Furthermore, quantities of Fe(II) were detected in the sludge fluorescence in situ hybridization (FISH) and denaturated gradient gel electrophoresis (DGGE) analyses further revealed that in the sludge, some Anammox bacteria were retained, and some microbes were enriched during the acclimatization process. We thus deduced that in Anammox sludge, Fe(III) reduction takes place together with ammonia oxidation to NO 2 - and NO 3 - along with the Anammox process. Copyright © 2017. Published by Elsevier B.V.

  3. Biogenic emissions modeling for Southeastern Texas

    Energy Technology Data Exchange (ETDEWEB)

    Estes, M.; Jacob, D.; Jarvie, J. [Texas Natural Resource Conservation Commission, Austin, TX (United States)] [and others

    1996-12-31

    The Texas Natural Resource Conservation Commission (TNRCC) modeling staff performed biogenic hydrocarbon emissions modeling in support of gridded photochemical modeling for ozone episodes in 1992 and 1993 for the Coastal Oxidant Assessment for Southeast Texas (COAST) modeling domain. This paper summarizes the results of the biogenic emissions modeling and compares preliminary photochemical modeling results to ambient air monitoring data collected during the 1993 COAST study. Biogenic emissions were estimated using BIOME, a gridded biogenic emissions model that uses region-specific land use and biomass density data, and plant species-specific emission factor data. Ambient air monitoring data were obtained by continuous automated gas chromatography at two sites, one-hour canister samples at 5 sites, and 24-hour canister samples at 13 other sites. The concentrations of Carbon Bond-IV species (as determined from urban airshed modeling) were compared to measured hydrocarbon concentrations. In this paper, we examined diurnal and seasonal variations, as well as spatial variations.

  4. Electrochemistry of carbonaceous materials; 1. Oxidation of Sardinian coal by Fe(III) ions

    Energy Technology Data Exchange (ETDEWEB)

    Tomat, R.; Salmaso, R.; Zecchin, S. (CNR-Instituto di Polarografia ed Elettrochimica Preparativa, Padova (Italy))

    1992-04-01

    Oxidation of subbitiminous coal (Sulcis basin, Sardinia, Italy) by Fe(III) ions in aqueous H{sub 2}SO{sub 4} solution was investigated over a wide temperature range (20-80{degree}C). Experimental results are in accord with a reaction scheme involving a reversible complex between coal particles and Fe(III) ions as a first step in the oxidation process. At low coal concentration, the reaction rate follows first-order kinetics in both coal and ferric ions (overall second order), while at sufficiently high coal concentration, the reaction rate is consistent with first-order kinetics in Fe(III) concentration, appearing to be independent of coal concentration. The kinetic results obtained give preliminary information on the advantageous use of the Fe(III)/slurried coal reaction system to depolarize the anodic compartment of an electrolysis cell, for the production of H{sub 2}. 11 refs., 5 figs.

  5. Microbial removal of Fe(III) impurities from clay using dissimilatory iron reducers.

    Science.gov (United States)

    Lee, E Y; Cho, K S; Ryu, H W; Chang, Y K

    1999-01-01

    Fe(III) impurities, which detract refractoriness and whiteness from porcelain and pottery, could be biologically removed from low-quality clay by indigenous dissimilatory Fe(III)-reducing microorganisms. Insoluble Fe(III) in clay particles was leached out as soluble Fe(II), and the Fe(III) reduction reaction was coupled to the oxidation of sugars such as glucose, maltose and sucrose. A maximum removal of 44-45% was obtained when the relative amount of sugar was 5% (w/w; sugar/clay). By the microbial treatment, the whiteness of the clay was increased from 63.20 to 79.64, whereas the redness was clearly decreased from 13.47 to 3.55.

  6. Controls on Fe reduction and mineral formation by a subsurface bacterium

    Science.gov (United States)

    Glasauer, Susan; Weidler, Peter G.; Langley, Sean; Beveridge, Terry J.

    2003-04-01

    The reductive dissolution of FeIII (hydr)oxides by dissimilatory iron-reducing bacteria (DIRB) could have a large impact on sediment genesis and Fe transport. If DIRB are able to reduce FeIII in minerals of high structural order to carry out anaerobic respiration, their range could encompass virtually every O 2-free environment containing FeIII and adequate conditions for cell growth. Previous studies have established that Shewanella putrefaciens CN32, a known DIRB, will reduce crystalline Fe oxides when initially grown at high densities in a nutrient-rich broth, conditions that poorly model the environments where CN32 is found. By contrast, we grew CN32 by batch culture solely in a minimal growth medium. The stringent conditions imposed by the growth method better represent the conditions that cells are likely to encounter in their natural habitat. Furthermore, the expression of reductases necessary to carry out dissimilatory Fe reduction depends on the method of growth. It was found that under anaerobic conditions CN32 reduced hydrous ferric oxide (HFO), a poorly crystalline FeIII mineral, and did not reduce suspensions containing 4 mM FeIII in the form of poorly ordered nanometer-sized goethite (α-FeOOH), well-ordered micron-sized goethite, or nanometer-sized hematite (α-Fe 2O 3) crystallites. Transmission electron microscopy (TEM) showed that all minerals but the micron-sized goethite attached extensively to the bacteria and appeared to penetrate the outer cellular membrane. In the treatment with HFO, new FeII and FeIII minerals formed during reduction of HFO-Fe in culture medium containing 4.0 mmol/L P i (soluble inorganic P), as observed by TEM with energy-dispersive X-ray spectroscopy, selected area electron diffraction, and X-ray diffraction. The minerals included magnetite (Fe 3O 4), goethite, green rust, and vivianite [Fe 3(PO 4) 2 · 8H 2O]. Vivianite appeared to be the stable end product and the mean coherence length was influenced by the rate of FeIII

  7. Stimulated anoxic biodegradation of aromatic hydrocarbons using Fe(III) ligands

    Science.gov (United States)

    Lovley, D.R.; Woodward, J.C.; Chapelle, F.H.

    1994-01-01

    Contamination of ground waters with water-soluble aromatic hydrocarbons, common components of petroleum pollution, often produces anoxic conditions under which microbial degradation of the aromatics is slow. Oxygen is often added to contaminated ground water to stimulate biodegradation, but this can be technically difficult and expensive. Insoluble Fe(III) oxides, which are generally abundant in shallow aquifers, are alternative potential oxidants, but are difficult for microorganisms to access. Here we report that adding organic ligands that bind to Fe(III) dramatically increases its bioavailability, and that in the presence of these ligands, rates of degradation of aromatic hydrocarbons in anoxic aquifer sediments are comparable to those in oxic sediments. We find that even benzene, which is notoriously refractory in the absence of oxygen, can be rapidly degraded. Our results suggest that increasing the bioavailability of Fe(III) by adding suitable ligands provides a potential alternative to oxygen addition for the bioremediation of petroleum-contaminated aquifers.Contamination of ground waters with water-soluble aromatic hydrocarbons, common components of petroleum pollution, often produces anoxic conditions under which microbial degradation of the aromatics is slow. Oxygen is often added to contaminated ground water to stimulate biodegradation, but this can be technically difficult and expensive. Insoluble Fe(III) oxides, which are generally abundant in shallow aquifers, are alternative potential oxidants, but are difficult for microorganisms to access. Here we report that adding organic ligands that bind to Fe(III) dramatically increases its bioavailability, and that in the presence of these ligands, rates of degradation of aromatic hydrocarbons in anoxic aquifer sediments are comparable to those in oxic sediments. We find that even benzene, which is notoriously refractory in the absence of oxygen, can be rapidly degraded. Our results suggest that increasing

  8. Combining polyethylenimine and Fe(III) for mediating pDNA transfection.

    Science.gov (United States)

    Jorge, Andreia F; Röder, Ruth; Kos, Petra; Dias, Rita S; Wagner, Ernst; Pais, Alberto A C C

    2015-06-01

    The potential use of Fe(III) ions in biomedical applications may predict the interest of its combination with pDNA-PEI polyplexes. The present work aims at assessing the impact of this metal on pDNA complex properties. Variations in the formation of complexes were imposed by using two types of biological buffers at different salt conditions. The incorporation of pDNA in complexes was characterised by gel electrophoresis and dynamic light scattering. Transfection efficiency and cytotoxicity were evaluated in HeLa and HUH-7 cell lines, supported by flow cytometry assays. Fe(III) enhances pDNA incorporation in the complex, irrespective of the buffer used. Transfection studies reveal that the addition of Fe(III) to complexes at low ionic strength reduces gene transfection, while those prepared under high salt content do not affect or, in a specific case, increase gene transfection up to 5 times. This increase may be a consequence of a favoured interaction of polyplexes with cell membrane and uptake. At low salt conditions, results attained with chloroquine indicate that the metal may inhibit polyplex endosomal escape. A reduction on the amount of PEI (N/P 5) formed at intermediary ionic strength, complemented by Fe(III), reduces the size of complexes while maintaining a transfection efficiency similar to that obtained to N/P 6. Fe(III) emerges as a good supporting condensing agent to modulate pDNA-PEI properties, including condensation, size and cytotoxicity, without a large penalty on gene transfection. This study highlights important aspects that govern pDNA transfection and elucidates the benefits of incorporating the versatile Fe(III) in a gene delivery system. Copyright © 2015 Elsevier B.V. All rights reserved.

  9. Cd Mobility in Anoxic Fe-Mineral-Rich Environments - Potential Use of Fe(III)-Reducing Bacteria in Soil Remediation

    Science.gov (United States)

    Muehe, E. M.; Adaktylou, I. J.; Obst, M.; Schröder, C.; Behrens, S.; Hitchcock, A. P.; Tylsizczak, T.; Michel, F. M.; Krämer, U.; Kappler, A.

    2014-12-01

    Agricultural soils are increasingly burdened with heavy metals such as Cd from industrial sources and impure fertilizers. Metal contaminants enter the food chain via plant uptake from soil and negatively affect human and environmental health. New remediation approaches are needed to lower soil metal contents. To apply these remediation techniques successfully, it is necessary to understand how soil microbes and minerals interact with toxic metals. Here we show that microbial Fe(III) reduction initially mobilizes Cd before its immobilization under anoxic conditions. To study how microbial Fe(III) reduction influences Cd mobility, we isolated a new Cd-tolerant, Fe(III)-reducing Geobacter sp. from a heavily Cd-contaminated soil. In lab experiments, this Geobacter strain first mobilized Cd from Cd-loaded Fe(III) hydroxides followed by precipitation of Cd-bearing mineral phases. Using Mössbauer spectroscopy and scanning electron microscopy, the original and newly formed Cd-containing Fe(II) and Fe(III) mineral phases, including Cd-Fe-carbonates, Fe-phosphates and Fe-(oxyhydr)oxides, were identified and characterized. Using energy-dispersive X-ray spectroscopy and synchrotron-based scanning transmission X-ray microscopy, Cd was mapped in the Fe(II) mineral aggregates formed during microbial Fe(III) reduction. Microbial Fe(III) reduction mobilizes Cd prior to its precipitation in Cd-bearing mineral phases. The mobilized Cd could be taken up by phytoremediating plants, resulting in a net removal of Cd from contaminated sites. Alternatively, Cd precipitation could reduce Cd bioavailability in the environment, causing less toxic effects to crops and soil microbiota. However, the stability and thus bioavailability of these newly formed Fe-Cd mineral phases needs to be assessed thoroughly. Whether phytoremediation or immobilization of Cd in a mineral with reduced Cd bioavailability are feasible mechanisms to reduce toxic effects of Cd in the environment remains to be

  10. BIOGENIC AMINES CONTENT IN DIFFERENT WINE SAMPLES

    Directory of Open Access Journals (Sweden)

    Attila Kántor

    2015-02-01

    Full Text Available Twenty-five samples of different Slovak wines before and after filtration were analysed in order to determine the content of eight biogenic amines (tryptamine, phenylalanine, putrescine, cadaverine, histamine, tyramine, spermidine and spermine. The method involves extraction of biogenic amines from wine samples with used dansyl chloride. Ultra-high performance liquid chromatography (UHPLC was used for determination of biogenic amines equipped with a Rapid Resolution High Definition (RRHD, DAD detectors and Extend-C18 LC column (50 mm x 3.0 mm ID, 1.8 μm particle size. In this study the highest level of biogenic amine in all wine samples represent tryptamine (TRM with the highest content 170.9±5.3 mg/L in Pinot Blanc wine. Phenylalanine (PHE cadaverine (CAD, histamine (HIS and spermidine (SPD were not detected in all wines; mainly SPD was not detected in 16 wines, HIS not detected in 14 wines, PHE and CAD not detected in 2 wines. Tyramine (TYR, spermine (SPN and putrescine (PUT were detected in all wines, but PUT and SPN in very low concentration. The worst wine samples with high biogenic amine content were Saint Laurent (BF, Pinot Blanc (S and Pinot Noir (AF.

  11. Fe(III) complex of biuret-amide based macrocyclic ligand as peroxidase enzyme mimic.

    Science.gov (United States)

    Panda, Chakadola; Ghosh, Munmun; Panda, Tamas; Banerjee, Rahul; Sen Gupta, Sayam

    2011-07-28

    An Fe(III) complex of a biuret-amide based macrocyclic ligand that exhibits both excellent reactivity for the activation of H(2)O(2) and high stability, especially at low pH and high ionic strength, is reported.

  12. Diversity of isolates performing Fe(III) reduction from paddy soil fed ...

    African Journals Online (AJOL)

    This study examined microbial diversity of Fe(III)-reducing bacteria isolates in paddy soils amended with ferrihydrite and different organic carbon (C) sources. Results show that Fe(III) reduction rate and Fe(II) accumulation in soil enrichments amended with glucose were the greatest followed by pyruvate, lactate, acetate and ...

  13. Reactivity of biogenic manganese oxide for metal sequestration and photochemistry: Computational solid state physics study

    Energy Technology Data Exchange (ETDEWEB)

    Kwon, K.D.; Sposito, G.

    2010-02-01

    Many microbes, including both bacteria and fungi, produce manganese (Mn) oxides by oxidizing soluble Mn(II) to form insoluble Mn(IV) oxide minerals, a kinetically much faster process than abiotic oxidation. These biogenic Mn oxides drive the Mn cycle, coupling it with diverse biogeochemical cycles and determining the bioavailability of environmental contaminants, mainly through strong adsorption and redox reactions. This mini review introduces recent findings based on quantum mechanical density functional theory that reveal the detailed mechanisms of toxic metal adsorption at Mn oxide surfaces and the remarkable role of Mn vacancies in the photochemistry of these minerals.

  14. The ABAG biogenic emissions inventory project

    Science.gov (United States)

    Carson-Henry, C. (Editor)

    1982-01-01

    The ability to identify the role of biogenic hydrocarbon emissions in contributing to overall ozone production in the Bay Area, and to identify the significance of that role, were investigated in a joint project of the Association of Bay Area Governments (ABAG) and NASA/Ames Research Center. Ozone, which is produced when nitrogen oxides and hydrocarbons combine in the presence of sunlight, is a primary factor in air quality planning. In investigating the role of biogenic emissions, this project employed a pre-existing land cover classification to define areal extent of land cover types. Emission factors were then derived for those cover types. The land cover data and emission factors were integrated into an existing geographic information system, where they were combined to form a Biogenic Hydrocarbon Emissions Inventory. The emissions inventory information was then integrated into an existing photochemical dispersion model.

  15. Microbial Reducibility of Fe(III Phases Associated with the Genesis of Iron Ore Caves in the Iron Quadrangle, Minas Gerais, Brazil

    Directory of Open Access Journals (Sweden)

    Ceth W. Parker

    2013-11-01

    Full Text Available The iron mining regions of Brazil contain thousands of “iron ore caves” (IOCs that form within Fe(III-rich deposits. The mechanisms by which these IOCs form remain unclear, but the reductive dissolution of Fe(III (hydroxides by Fe(III reducing bacteria (FeRB could provide a microbiological mechanism for their formation. We evaluated the susceptibility of Fe(III deposits associated with these caves to reduction by the FeRB Shewanella oneidensis MR-1 to test this hypothesis. Canga, an Fe(III-rich duricrust, contained poorly crystalline Fe(III phases that were more susceptible to reduction than the Fe(III (predominantly hematite associated with banded iron formation (BIF, iron ore, and mine spoil. In all cases, the addition of a humic acid analogue enhanced Fe(III reduction, presumably by shuttling electrons from S. oneidensis to Fe(III phases. The particle size and quartz-Si content of the solids appeared to exert control on the rate and extent of Fe(III reduction by S. oneidensis, with more bioreduction of Fe(III associated with solid phases containing more quartz. Our results provide evidence that IOCs may be formed by the activities of Fe(III reducing bacteria (FeRB, and the rate of this formation is dependent on the physicochemical and mineralogical characteristics of the Fe(III phases of the surrounding rock.

  16. Biogenic amines in meat and meat products.

    Science.gov (United States)

    Ruiz-Capillas, Claudia; Jiménez-Colmenero, Francisco

    2004-01-01

    It has been recognized for some time that biogenic amines occur in a wide range of foods, among them meat and meat products. Meat is an important component of the diet in developed countries. The presence of these amines in food is of interest for two reasons: firstly, for toxicological reasons, in the sense that high levels of dietary biogenic amines can be toxic for certain consumers, and secondly, for their role as possible quality indicators. Based on these two premises, the present article offers a new analysis on aspects of toxicology and on the use of biogenic amines as a quality control method, as well as on their presence in meat and meat products. The article focuses particularly on factors affecting the production of biogenic amines, with reference to various parameters relating to microorganisms, meat raw materials, and processing conditions. A better understanding of the factors determining their formation (i.e., microorganisms, raw materials used, and technological processes applied) and their effects could lead to ways of controlling their production, limiting their presence in the end product, and hence, rendering them less toxic.

  17. Microbiological, physicochemical properties and biogenic amine ...

    African Journals Online (AJOL)

    Thirty three strained yoghurt samples were collected from local open markets in different provinces of Turkey (Afyon [AF], Aydın [AY], Burdur [B], Isparta [I] and Muğla [M]). Physicochemical and microbiological properties, as well as biogenic amine content, were examined in each of the samples. The dry matter (17.90 to ...

  18. Selection of Nutrient Used in Biogenic Healing Agent for Cementitious Materials

    Directory of Open Access Journals (Sweden)

    Eirini Tziviloglou

    2017-06-01

    Full Text Available Biogenic self-healing cementitious materials target on the closure of micro-cracks with precipitated inorganic minerals originating from bacterial metabolic activity. Dormant bacterial spores and organic mineral compounds often constitute a biogenic healing agent. The current paper focuses on the investigation of the most appropriate organic carbon source to be used as component of a biogenic healing agent. It is of great importance to use an appropriate organic source, since it will first ensure an optimal bacterial performance in terms of metabolic activity, while it should, second, affect the least the properties of the cementitious matrix. The selection is made among three different organic compounds, namely calcium lactate (CaL, calcium acetate (CaA, and sodium gluconate (NaG. The methodology that was used for the research was based on continuous and non-continuous oxygen consumption measurements of washed bacterial cultures and on compressive strength tests on mortar cubes. The oxygen consumption investigation revealed a preference for CaL and CaA, but an indifferent behavior for NaG. The compressive strength on mortar cubes with different amounts of either CaL or CaA (up to 2.24% per cement weight was not or it was positively affected when the compounds were dissolved in the mixing water. In fact, for CaL, the increase in compressive strength reached 8%, while for CaA, the maximum strength increase was 13.4%.

  19. Selection of nutrient used in biogenic healing agent for cementitious materials

    Science.gov (United States)

    Tziviloglou, Eirini; Wiktor, Virginie; Jonkers, Henk M.; Schlangen, Erik

    2017-06-01

    Biogenic self-healing cementitious materials target on the closure of micro-cracks with precipitated inorganic minerals originating from bacterial metabolic activity. Dormant bacterial spores and organic mineral compounds often constitute a biogenic healing agent. The current paper focuses on the investigation of the most appropriate organic carbon source to be used as component of a biogenic healing agent. It is of great importance to use an appropriate organic source, since it will firstly ensure an optimal bacterial performance in terms of metabolic activity, while it should secondly affect the least the properties of the cementitious matrix. The selection is made among three different organic compounds, namely calcium lactate, calcium acetate and sodium gluconate. The methodology that was used for the research was based on continuous and non-continuous oxygen consumption measurements of washed bacterial cultures and on compressive strength tests on mortar cubes. The oxygen consumption investigation revealed a preference for calcium lactate and acetate, but an indifferent behaviour for sodium gluconate. The compressive strength on mortar cubes with different amounts of either calcium lactate or acetate (up to 2.24% per cement weight) was not or it was positively affected when the compounds were dissolved in the mixing water. In fact, for calcium lactate the increase in compressive strength reached 8%, while for calcium acetate the maximum strength increase was 13.4%.

  20. Hexanuclear Fe(III) wheels functionalized by amino-acetonitrile derivatives

    Science.gov (United States)

    Kravtsov, Victor Ch.; Malaestean, Iurie; Stingach, Eugenia P.; Duca, Gheorghe G.; Macaev, Fliur Z.; van Leusen, Jan; Kögerler, Paul; Hauser, Jürg; Krämer, Karl; Decurtins, Silvio; Liu, Shi-Xia; Ghosh, Ashta C.; Garcia, Yann; Baca, Svetlana G.

    2018-04-01

    Three new hexanuclear Fe(III) coordination wheels [Fe6Cl6(L1)6]·5(MeCN) (1), [Na0.5Fe6Cl6(L1)6](N3)0.5·4.5(MeCN) (2), and [Fe6Cl6(L2)6]·2(MeCN) (3) have been synthesized with new prepared amino-acetonitrile derivatives 2-[bis(2-hydroxyethyl)amino]acetonitrile hydrochloride (H2L1) and 3-[bis(2-hydroxyethyl)amino]propanenitrile hydrochloride (H2L2). They were structurally characterized by single-crystal X-ray diffraction. Mößbauer spectroscopy and magnetic susceptibility measurements indicate dominant antiferromagnetic behavior between the Fe(III) centers.

  1. Mechanistic investigation of Fe(III) oxide reduction by low molecular weight organic sulfur species

    Science.gov (United States)

    Eitel, Eryn M.; Taillefert, Martial

    2017-10-01

    Low molecular weight organic sulfur species, often referred to as thiols, are known to be ubiquitous in aquatic environments and represent important chemical reductants of Fe(III) oxides. Thiols are excellent electron shuttles used during dissimilatory iron reduction, and in this capacity could indirectly affect the redox state of sediments, release adsorbed contaminants via reductive dissolution, and influence the carbon cycle through alteration of bacterial respiration processes. Interestingly, the reduction of Fe(III) oxides by thiols has not been previously investigated in environmentally relevant conditions, likely due to analytical limitations associated with the detection of thiols and their oxidized products. In this study, a novel electrochemical method was developed to simultaneously determine thiol/disulfide pair concentrations in situ during the reduction of ferrihydrite in batch reactors. First order rate laws with respect to initial thiol concentration were confirmed for Fe(III) oxyhydroxide reduction by four common thiols: cysteine, homocysteine, cysteamine, and glutathione. Zero order was determined for both Fe(III) oxyhydroxide and proton concentration at circumneutral pH. A kinetic model detailing the molecular mechanism of the reaction was optimized with proposed intermediate surface structures. Although metal oxide overall reduction rate constants were inversely proportional to the complexity of the thiol structure, the extent of metal reduction increased with structure complexity, indicating that surface complexes play a significant role in the ability of these thiols to reduce iron. Taken together, these results demonstrate the importance of considering the molecular reaction mechanism at the iron oxide surface when investigating the potential for thiols to act as electron shuttles during dissimilatory iron reduction in natural environments.

  2. Enrichment of Geobacter species in response to stimulation of Fe(III) reduction in sandy aquifer sediments

    Science.gov (United States)

    Snoeyenbos-West, O.L.; Nevin, K.P.; Anderson, R.T.; Lovely, D.R.

    2000-01-01

    Engineered stimulation of Fe(III) has been proposed as a strategy to enhance the immobilization of radioactive and toxic metals in metal-contaminated subsurface environments. Therefore, laboratory and field studies were conducted to determine which microbial populations would respond to stimulation of Fe(III) reduction in the sediments of sandy aquifers. In laboratory studies, the addition of either various organic electron donors or electron shuttle compounds stimulated Fe(III) reduction and resulted in Geobacter sequences becoming important constituents of the Bacterial 16S rDNA sequences that could be detected with PCR amplification and denaturing gradient gel electrophoresis (DGGE). Quantification of Geobacteraceae sequences with a PCR most-probable-number technique indicated that the extent to which numbers of Geobacter increased was related to the degree of stimulation of Fe(III) reduction. Geothrix species were also enriched in some instances, but were orders of magnitude less numerous than Geobacter species. Shewanella species were not detected, even when organic compounds known to be electron donors for Shewanella species were used to stimulate Fe(III) reduction in the sediments. Geobacter species were also enriched in two field experiments in which Fe(III) reduction was stimulated with the addition of benzoate or aromatic hydrocarbons. The apparent growth of Geobacter species concurrent with increased Fe(III) reduction suggests that Geobacter species were responsible for much of the Fe(III) reduction in all of the stimulation approaches evaluated in three geographically distinct aquifers. Therefore, strategies for subsurface remediation that involve enhancing the activity of indigenous Fe(III)-reducing populations in aquifers should consider the physiological properties of Geobacter species in their treatment design.

  3. Biogenic volatile organic compounds - small is beautiful

    Science.gov (United States)

    Owen, S. M.; Asensio, D.; Li, Q.; Penuelas, J.

    2012-12-01

    While canopy and regional scale flux measurements of biogenic volatile organic compounds (bVOCs) are essential to obtain an integrated picture of total compound reaching the atmosphere, many fascinating and important emission details are waiting to be discovered at smaller scales, in different ecological and functional compartments. We concentrate on bVOCs below ground to soil surfaces are small, bVOCs are exuded by roots of some plant species, and can be extracted from decaying litter. Naturally occurring monoterpenes in the rhizosphere provide a specialised carbon source for micro-organisms, helping to define the micro-organism community structure, and impacting on nutrient cycles which are partly controlled by microorganisms. Naturally occurring monoterpenes in the soil system could also affect the aboveground structure of ecosystems because of their role in plant defence strategies and as mediating chemicals in allelopathy. A gradient of monoterpene concentration was found in soil around Pinus sylvestris and Pinus halepensis, decreasing with distance from the tree. Some compounds (α-pinene, sabinene, humulene and caryophyllene) in mineral soil were linearly correlated with the total amount of each compound in the overlying litter, indicating that litter might be the dominant source of these compounds. However, α-pinene did not fall within the correlation, indicating a source other than litter, probably root exudates. We also show that rhizosphere bVOCs can be a carbon source for soil microbes. In a horizontal gradient from Populus tremula trees, microbes closest to the tree trunk were better enzymatically equipped to metabolise labeled monoterpene substrate. Monoterpenes can also increase the degradation rate in soil of the persistant organic pollutants, likely acting as analogues for the cometabo-lism of polychlorinated biphenyls (PCBs) Flowers of a ginger species (Alpinia kwangsiensis) and a fig species (Ficus hispida) showed different bVOC signals pre- and

  4. Mechanisms for Electron Transfer Through Pili to Fe(III) Oxide in Geobacter

    Energy Technology Data Exchange (ETDEWEB)

    Lovley, Derek R. [Univ. of Massachusetts, Amherst, MA (United States)

    2015-03-09

    The purpose of these studies was to aid the Department of Energy in its goal of understanding how microorganisms involved in the bioremediation of metals and radionuclides sustain their activity in the subsurface. This information is required in order to incorporate biological processes into decision making for environmental remediation and long-term stewardship of contaminated sites. The proposed research was designed to elucidate the mechanisms for electron transfer to Fe(III) oxides in Geobacter species because Geobacter species are abundant dissimilatory metal-reducing microorganisms in a diversity of sites in which uranium is undergoing natural attenuation via the reduction of soluble U(VI) to insoluble U(IV) or when this process is artificially stimulated with the addition of organic electron donors. This study investigated the novel, but highly controversial, concept that the final conduit for electron transfer to Fe(III) oxides are electrically conductive pili. The specific objectives were to: 1) further evaluate the conductivity along the pili of Geobacter sulfurreducens and related organisms; 2) determine the mechanisms for pili conductivity; and 3) investigate the role of pili in Fe(III) oxide reduction. The studies demonstrated that the pili of G. sulfurreducens are conductive along their length. Surprisingly, the pili possess a metallic-like conductivity similar to that observed in synthetic organic conducting polymers such as polyaniline. Detailed physical analysis of the pili, as well as studies in which the structure of the pili was genetically modified, demonstrated that the metallic-like conductivity of the pili could be attributed to overlapping pi-pi orbitals of aromatic amino acids. Other potential mechanisms for conductivity, such as electron hopping between cytochromes associated with the pili were definitively ruled out. Pili were also found to be essential for Fe(III) oxide reduction in G. metallireducens. Ecological studies demonstrated

  5. Microbial Fe(III) Oxide Reduction in Chocolate Pots Hot Springs, Yellowstone National Park

    Science.gov (United States)

    Fortney, N. W.; Roden, E. E.; Boyd, E. S.; Converse, B. J.

    2014-12-01

    Previous work on dissimilatory iron reduction (DIR) in Yellowstone National Park (YNP) has focused on high temperature, low pH environments where soluble Fe(III) is utilized as an electron acceptor for respiration. Much less attention has been paid to DIR in lower temperature, circumneutral pH environments, where solid phase Fe(III) oxides are the dominant forms of Fe(III). This study explored the potential for DIR in the warm (ca. 40-50°C), circumneutral pH Chocolate Pots hot springs (CP) in YNP. Most probable number (MPN) enumerations and enrichment culture studies confirmed the presence of endogenous microbial communities that reduced native CP Fe(III) oxides. Enrichment cultures demonstrated sustained DIR coupled to acetate and lactate oxidation through repeated transfers over ca. 450 days. Pyrosequencing of 16S rRNA genes indicated that the dominant organisms in the enrichments were closely affiliated with the well known Fe(III) reducer Geobacter metallireducens. Additional taxa included relatives of sulfate reducing bacterial genera Desulfohalobium and Thermodesulfovibrio; however, amendment of enrichments with molybdate, an inhibitor of sulfate reduction, suggested that sulfate reduction was not a primary metabolic pathway involved in DIR in the cultures. A metagenomic analysis of enrichment cultures is underway in anticipation of identifying genes involved in DIR in the less well-characterized dominant organisms. Current studies are aimed at interrogating the in situ microbial community at CP. Core samples were collected along the flow path (Fig. 1) and subdivided into 1 cm depth intervals for geochemical and microbiological analysis. The presence of significant quantities of Fe(II) in the solids indicated that DIR is active in situ. A parallel study investigated in vitro microbial DIR in sediments collected from three of the coring sites. DNA was extracted from samples from both studies for 16S rRNA gene and metagenomic sequencing in order to obtain a

  6. Formation temperatures of thermogenic and biogenic methane

    Science.gov (United States)

    Stolper, D.A.; Lawson, M.; Davis, C.L.; Ferreira, A.A.; Santos Neto, E. V.; Ellis, G.S.; Lewan, M.D.; Martini, Anna M.; Tang, Y.; Schoell, M.; Sessions, A.L.; Eiler, J.M.

    2014-01-01

    Methane is an important greenhouse gas and energy resource generated dominantly by methanogens at low temperatures and through the breakdown of organic molecules at high temperatures. However, methane-formation temperatures in nature are often poorly constrained. We measured formation temperatures of thermogenic and biogenic methane using a “clumped isotope” technique. Thermogenic gases yield formation temperatures between 157° and 221°C, within the nominal gas window, and biogenic gases yield formation temperatures consistent with their comparatively lower-temperature formational environments (<50°C). In systems where gases have migrated and other proxies for gas-generation temperature yield ambiguous results, methane clumped-isotope temperatures distinguish among and allow for independent tests of possible gas-formation models.

  7. Biogenic Mn-Oxides in Subseafloor Basalts.

    Science.gov (United States)

    Ivarsson, Magnus; Broman, Curt; Gustafsson, Håkan; Holm, Nils G

    2015-01-01

    The deep biosphere of the subseafloor basalts is recognized as a major scientific frontier in disciplines like biology, geology, and oceanography. Recently, the presence of fungi in these environments has involved a change of view regarding diversity and ecology. Here, we describe fossilized fungal communities in vugs in subseafloor basalts from a depth of 936.65 metres below seafloor at the Detroit Seamount, Pacific Ocean. These fungal communities are closely associated with botryoidal Mn oxides composed of todorokite. Analyses of the Mn oxides by Electron Paramagnetic Resonance spectroscopy (EPR) indicate a biogenic signature. We suggest, based on mineralogical, morphological and EPR data, a biological origin of the botryoidal Mn oxides. Our results show that fungi are involved in Mn cycling at great depths in the seafloor and we introduce EPR as a means to easily identify biogenic Mn oxides in these environments.

  8. Framework for Assessing Biogenic CO2 Emissions from ...

    Science.gov (United States)

    This revision of the 2011 report, Accounting Framework for Biogenic CO2 Emissions from Stationary Sources, evaluates biogenic CO2 emissions from stationary sources, including a detailed study of the scientific and technical issues associated with assessing biogenic carbon dioxide emissions from stationary sources. EPA developed the revised report, Framework for Assessing Biogenic CO2 Emissions from Stationary Sources, to present a methodological framework for assessing the extent to which the production, processing, and use of biogenic material at stationary sources for energy production results in a net atmospheric contribution of biogenic CO2 emissions. Biogenic carbon dioxide emissions are defined as CO2 emissions related to the natural carbon cycle, as well as those resulting from the production, harvest, combustion, digestion, decomposition, and processing of biologically-based materials. The EPA is continuing to refine its technical assessment of biogenic CO2 emissions through another round of targeted peer review of the revised study with the EPA Science Advisory Board (SAB). This study was submitted to the SAB's Biogenic Carbon Emissions Panel in February 2015. http://yosemite.epa.gov/sab/sabproduct.nsf/0/3235dac747c16fe985257da90053f252!OpenDocument&TableRow=2.2#2 The revised report will inform efforts by policymakers, academics, and other stakeholders to evaluate the technical aspects related to assessments of biogenic feedstocks used for energy at s

  9. Cytotoxicity and genotoxicity of biogenic silver nanoparticles

    International Nuclear Information System (INIS)

    Lima, R; Feitosa, L O; Ballottin, D; Tasic, L; Durán, N; Marcato, P D

    2013-01-01

    Biogenic silver nanoparticles with 40.3 ± 3.5 nm size and negative surface charge (− 40 mV) were prepared with Fusarium oxysporum. The cytotoxicity of 3T3 cell and human lymphocyte were studied by a TaliTM image-based cytometer and the genotoxicity through Allium cepa and comet assay. The results of BioAg-w (washed) and BioAg-nw (unwashed) biogenic silver nanoparticles showed cytotoxicity exceeding 50 μg/mL with no significant differences of response in 5 and 10 μg/mL regarding viability. Results of genotoxicity at concentrations 5.0 and 10.0 ug/mL show some response, but at concentrations 0.5 and 1.0 μg/mL the washed and unwashed silver nanoparticles did not present any effect. This in an important result since in tests with different bacteria species and strains, including resistant, MIC (minimal inhibitory concentration) had good answers at concentrations less than 1.9 μg/mL. This work concludes that biogenic silver nanoparticles may be a promising option for antimicrobial use in the range where no cyto or genotoxic effect were observed. Furthermore, human cells were found to have a greater resistance to the toxic effects of silver nanoparticles in comparison with other cells.

  10. Rett syndrome - Stimulation of endogenous biogenic amines

    Science.gov (United States)

    Pelligra, R.; Norton, R. D.; Wilkinson, R.; Leon, H. A.; Matson, W. R.

    1992-01-01

    Transient hypercapnic hyperoxemia was induced in two Rett syndrome children by the administration of a gaseous mixture of 80 percent O2 and 20 percent CO2. Time course studies of neurotransmitters and their metabolites showed an immediate and marked increase in central biogenic amine turnover following inhalation of the gas mixture. The increased turnover of biogenic amines was associated with improved clinical changes. This suggests a coupled relationship and provides further support for an etiological role of neurotransmitter dysfunction in Rett syndrome. In a complementary study, elevation of pulmonary CO2 by application of a simple rebreathing device resulted in improvement of abnormal blood gases and elimination of the Cheyne-Stokes-like respiratory pattern of the Rett syndrome. Near normalization of the EEG occurred when a normal respiratory pattern was imposed by means of a respirator. Taken together, these results lead to the preliminary conclusion that cerebral hypoxemia secondary to abnormal respiratory function may contribute to diminished production of biogenic amines in Rett syndrome.

  11. Organic carbon and reducing conditions lead to cadmium immobilization by secondary Fe mineral formation in a pH-neutral soil.

    Science.gov (United States)

    Muehe, E Marie; Adaktylou, Irini J; Obst, Martin; Zeitvogel, Fabian; Behrens, Sebastian; Planer-Friedrich, Britta; Kraemer, Ute; Kappler, Andreas

    2013-01-01

    Cadmium (Cd) is of environmental relevance as it enters soils via Cd-containing phosphate fertilizers and endangers human health when taken up by crops. Cd is known to associate with Fe(III) (oxyhydr)oxides in pH-neutral to slightly acidic soils, though it is not well understood how the interrelation of Fe and Cd changes under Fe(III)-reducing conditions. Therefore, we investigated how the mobility of Cd changes when a Cd-bearing soil is faced with organic carbon input and reducing conditions. Using fatty acid profiles and quantitative PCR, we found that both fermenting and Fe(III)-reducing bacteria were stimulated by organic carbon-rich conditions, leading to significant Fe(III) reduction. The reduction of Fe(III) minerals was accompanied by increasing soil pH, increasing dissolved inorganic carbon, and decreasing Cd mobility. SEM-EDX mapping of soil particles showed that a minor fraction of Cd was transferred to Ca- and S-bearing minerals, probably carbonates and sulfides. Most of the Cd, however, correlated with a secondary iron mineral phase that was formed during microbial Fe(III) mineral reduction and contained mostly Fe, suggesting an iron oxide mineral such as magnetite (Fe3O4). Our data thus provide evidence that secondary Fe(II) and Fe(II)/Fe(III) mixed minerals could be a sink for Cd in soils under reducing conditions, thus decreasing the mobility of Cd in the soil.

  12. To what extent can biogenic SOA be controlled?

    Science.gov (United States)

    Carlton, Annmarie G; Pinder, Robert W; Bhave, Prakash V; Pouliot, George A

    2010-05-01

    The implicit assumption that biogenic secondary organic aerosol (SOA) is natural and can not be controlled hinders effective air quality management. Anthropogenic pollution facilitates transformation of naturally emitted volatile organic compounds (VOCs) to the particle phase, enhancing the ambient concentrations of biogenic secondary organic aerosol (SOA). It is therefore conceivable that some portion of ambient biogenic SOA can be removed by controlling emissions of anthropogenic pollutants. Direct measurement of the controllable fraction of biogenic SOA is not possible, but can be estimated through 3-dimensional photochemical air quality modeling. To examine this in detail, 22 CMAQ model simulations were conducted over the continental U.S. (August 15 to September 4, 2003). The relative contributions of five emitted pollution classes (i.e., NO(x), NH(3), SO(x), reactive non methane carbon (RNMC) and primary carbonaceous particulate matter (PCM)) on biogenic SOA were estimated by removing anthropogenic emissions of these pollutants, one at a time and all together. Model results demonstrate a strong influence of anthropogenic emissions on predicted biogenic SOA concentrations, suggesting more than 50% of biogenic SOA in the eastern U.S. can be controlled. Because biogenic SOA is substantially enhanced by controllable emissions, classification of SOA as biogenic or anthropogenic based solely on VOC origin is not sufficient to describe the controllable fraction.

  13. In situ chemical oxidation of contaminated groundwater by persulfate: decomposition by Fe(III)- and Mn(IV)-containing oxides and aquifer materials.

    Science.gov (United States)

    Liu, Haizhou; Bruton, Thomas A; Doyle, Fiona M; Sedlak, David L

    2014-09-02

    Persulfate (S2O8(2-)) is being used increasingly for in situ chemical oxidation (ISCO) of organic contaminants in groundwater, despite an incomplete understanding of the mechanism through which it is converted into reactive species. In particular, the decomposition of persulfate by naturally occurring mineral surfaces has not been studied in detail. To gain insight into the reaction rates and mechanism of persulfate decomposition in the subsurface, and to identify possible approaches for improving its efficacy, the decomposition of persulfate was investigated in the presence of pure metal oxides, clays, and representative aquifer solids collected from field sites in the presence and absence of benzene. Under conditions typical of groundwater, Fe(III)- and Mn(IV)-oxides catalytically converted persulfate into sulfate radical (SO4(•-)) and hydroxyl radical (HO(•)) over time scales of several weeks at rates that were 2-20 times faster than those observed in metal-free systems. Amorphous ferrihydrite was the most reactive iron mineral with respect to persulfate decomposition, with reaction rates proportional to solid mass and surface area. As a result of radical chain reactions, the rate of persulfate decomposition increased by as much as 100 times when benzene concentrations exceeded 0.1 mM. Due to its relatively slow rate of decomposition in the subsurface, it can be advantageous to inject persulfate into groundwater, allowing it to migrate to zones of low hydraulic conductivity where clays, metal oxides, and contaminants will accelerate its conversion into reactive oxidants.

  14. Chloroplast Fe(III) chelate reductase activity is essential for seedling viability under iron limiting conditions

    OpenAIRE

    Jeong, Jeeyon; Cohu, Christopher; Kerkeb, Loubna; Pilon, Marinus; Connolly, Erin L.; Guerinot, Mary Lou

    2008-01-01

    Photosynthesis, heme biosynthesis, and Fe-S cluster assembly all take place in the chloroplast, and all require iron. Reduction of iron via a membrane-bound Fe(III) chelate reductase is required before iron transport across membranes in a variety of systems, but to date there has been no definitive genetic proof that chloroplasts have such a reduction system. Here we report that one of the eight members of the Arabidopsis ferric reductase oxidase (FRO) family, FRO7, localizes to the chloropla...

  15. Mineral resources of the Indian Ocean and related scientific research

    Digital Repository Service at National Institute of Oceanography (India)

    Siddiquie, H.N.; Gujar, A.R.; Hashimi, N.H.; Valsangkar, A.B.; Nath, B.N.

    and sulphur etc.) and the metalliferous brine deposits of the Red Sea. The minerals for the review have been grouped as (1) terrigenous (2) biogenous and (3) chemogenous. The present review covers the Indian Ocean as defined by FAIRBRIDGE (1966), extending...

  16. Biogenic arsenic volatilisation from an acidic wetland soil

    Science.gov (United States)

    Ilgen, Gunter; Huang, Jen-How; Lu, Shipeng; Tian, Liyan; Alewell, Christine

    2014-05-01

    Biogenic arsenic (As) volatilisation was budgeted at 26000 t yr-1as the largest input of the global As release into the atmosphere, thereby playing an important role in the biogeochemical cycle of As in the surface environment. In order to quantify As volatilisation from wetland soils and to elucidate the geochemical and microbiological factors governing As volatilisation, a series of incubations with an acidic wetland soil collected in NE-Bavaria in Germany were performed at 15oC for 4 months with addition of NaN3, arsenite (As(III)), FeCl3, NaSO4 and NaOAc with N2 and air in the headspace. Speciation of gaseous As in the headspace using GC-ICP-MS/ ESI-MS coupling showed the predominance of either arsine (AsH3) or trimethylarsine ((CH3)3As) in all treatments during the time course of incubation. Monomethylarsine ((CH3)AsH2) and dimethylarsine ((CH3)2AsH) could be only detected in trace amounts. Arsenic speciation in porewater with HPLC-ICP-MS revealed the predominance of As(III) and methylated As was never detectable. Arsenic volatilisation summed to 2.3 ng As (88% as AsH3) in the control incubations, which accounted for ~0.25 % of the total As storage in the wetland soil. Treatments with 10 mM NaN3 resulted in emission of only 0.03 ng As. In contrast, addition of 10 mM NaOAc stimulated microbial activities in wetland soils and subsequently rose As volatilisation to 8.5 ng As. It could be therefore concluded that As volatilisation from the wetland soils was mainly biological. Spiking 67 μM As(III) increased 10 times of As volatilisation and the proportion of methylated arsines increased to 66%, which is supposed to be caused by the largely enhanced As availability in porewater for microbes (480 ppb, ~65 times higher than those in the controls). Adding 10 mM FeCl3 stimulated microbial Fe(III) reducing activities but suppressed other microbial activities by lowering soil pH from 5 to 3.6, decreasing consequently As volatilisation to 0.3 ng As. The much lower redox

  17. Secondary biogeneous radiation of human organism

    International Nuclear Information System (INIS)

    Kuzin, A.M.; Surkenova, G.N.

    1999-01-01

    When studying samples of three types of tissues of alive healthy human organism (hands, surface of breast, hair) it is shown that hair permanently emit secondary biogeneous radiation (SBR) which may registered with biological detectors. The hypothesis is suggested that natural background radiation permanently exciting biopolymers (proteins, nuclei acids) being present in alive organism in condensed state induces permanently present electromagnetic field of SBR which is vitally important for human organism. The field partly extends beyond the organism, where it is registered with sensitive biological detectors [ru

  18. Reduction of Fe(III) oxides by phylogenetically and physiologically diverse thermophilic methanogens.

    Science.gov (United States)

    Yamada, Chihaya; Kato, Souichiro; Kimura, Satoshi; Ishii, Masaharu; Igarashi, Yasuo

    2014-09-01

    Three thermophilic methanogens (Methanothermobacter thermautotrophicus, Methanosaeta thermophila, and Methanosarcina thermophila) were investigated for their ability to reduce poorly crystalline Fe(III) oxides (ferrihydrite) and the inhibitory effects of ferrihydrite on their methanogenesis. This study demonstrated that Fe(II) generation from ferrihydrite occurs in the cultures of the three thermophilic methanogens only when H2 was supplied as the source of reducing equivalents, even in the cultures of Mst. thermophila that do not grow on and produce CH4 from H2/CO2. While supplementation of ferrihydrite resulted in complete inhibition or suppression of methanogenesis by the thermophilic methanogens, ferrihydrite reduction by the methanogens at least partially alleviates the inhibitory effects. Microscopic and crystallographic analyses on the ferrihydrite-reducing Msr. thermophila cultures exhibited generation of magnetite on its cell surfaces through partial reduction of ferrihydrite. These findings suggest that at least certain thermophilic methanogens have the ability to extracellularly transfer electrons to insoluble Fe(III) compounds, affecting their methanogenic activities, which would in turn have significant impacts on materials and energy cycles in thermophilic anoxic environments. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

  19. Chloroplast Fe(III) chelate reductase activity is essential for seedling viability under iron limiting conditions.

    Science.gov (United States)

    Jeong, Jeeyon; Cohu, Christopher; Kerkeb, Loubna; Pilon, Marinus; Connolly, Erin L; Guerinot, Mary Lou

    2008-07-29

    Photosynthesis, heme biosynthesis, and Fe-S cluster assembly all take place in the chloroplast, and all require iron. Reduction of iron via a membrane-bound Fe(III) chelate reductase is required before iron transport across membranes in a variety of systems, but to date there has been no definitive genetic proof that chloroplasts have such a reduction system. Here we report that one of the eight members of the Arabidopsis ferric reductase oxidase (FRO) family, FRO7, localizes to the chloroplast. Chloroplasts prepared from fro7 loss-of-function mutants have 75% less Fe(III) chelate reductase activity and contain 33% less iron per microgram of chlorophyll than wild-type chloroplasts. This decreased iron content is presumably responsible for the observed defects in photosynthetic electron transport. When germinated in alkaline soil, fro7 seedlings show severe chlorosis and die without setting seed unless watered with high levels of soluble iron. Overall, our results provide molecular evidence that FRO7 plays a role in chloroplast iron acquisition and is required for efficient photosynthesis in young seedlings and for survival under iron-limiting conditions.

  20. Pu(IV) and Fe(III) accumulation ability of heavy metal-tolerant soil fungi

    International Nuclear Information System (INIS)

    Levinskaite, L.; Smirnov, A.; Luksiene, B.; Druteikiene, R.; Remeikis, V.; Baltrunas, D.

    2009-01-01

    The work was aimed at studying abilities of soil microorganisms to participate in metal/radionuclide mobility processes by accumulating them. Soil microorganisms were treated with a mixture of heavy metals (Cr(III), Ni, Fe(III), Mn(II), Cd) in order to isolate the most tolerant ones. Among more metal-tolerant microorganisms microscopic fungi dominated. Tests of fungal tolerance towards each metal showed that the most tolerant fungi to almost all metals were Aspergillus niger, Penicillium oxalicum and Paecilomyces lilacinus. Accumulation ability of metal-tolerant fungi was tested using Pu(IV) and Fe(III). Investigation of Pu accumulation by fungal biomass showed that all the fungi accumulated Pu, and among the most effective radionuclide accumulators Eupenicillium sp., Penicillium oxalicum and Aspergillus niger could be mentioned. All the fungi showed high Fe-accumulation capacity. While growing in the medium with 1 mM iron, most fungi accumulated over 90% of Fe in their biomass. Very good accumulation and growth abilities in Fe-supplemented medium were demonstrated by Paecilomyces lilacinus. (authors)

  1. Biogenic hardparts: Difficult archives of the geological past (Invited)

    Science.gov (United States)

    Immenhauser, A.; Schone, B. R.; Hoffmann, R.; Niedermayr, A.

    2013-12-01

    Biomineralized exo- or endoskeletons of fossil marine invertebrates are widespread and diverse components of the Phanerozoic rock record of Earth's past and present oceans. Exoskeletons serve as protection against environmental pressure or predators, whilst endoskeletons can act as support or serve as an attachment for muscles and ligaments and hence as a mechanism for transmitting muscular forces. Biogenic hard parts represent sophisticated products resulting from the hierarchical interaction of inorganic minerals (95%) and macromolecular organic matrices, forming commonly less than 5%. The significance of many biogenic carbonate archives lies in the time-resolved growth patterns and their ability to record ambient environmental conditions in the form of multiple geochemical properties (multi-proxy archives) that have been widely used to assess past oceanic seawater properties. Here, we compile and review published work dealing with crystallization pathways of skeletal hard parts secreted by mollusks (i.e., bivalves and cephalopods) as well as brachiopods as widely used archives of ancient neritic epeiric settings. Bivalves and cephalopods (e.g., extinct ammonoids and belemnites and extant Sepia, Nautilus and Spirula) all form accretionary calcitic, aragonitic or vateritic skeletal hard parts. Despite the fact that mollusks and brachiopods form part of very different branches of the animal phylogenetic tree, their biomineralization strategies are surprisingly similar. Our main focus lies in a critical assessment of the complex pathways of ions and aquo-complexes from their source (seawater) to the final product (biomineral). We do this as an attempt to critically test the commonly held hypothesis that many fossil hard parts precipitated (under favorable conditions and pending subsequent diagenetic alteration) in equilibrium with seawater. Two main observations stand out: (1) the present knowledge on pathways and mechanisms (e.g., ion channel trans-membrane or

  2. Structure and dynamics of hydrated Fe(II) and Fe(III) ions. Quantum mechanical and molecular mechanical simulations

    International Nuclear Information System (INIS)

    Remsungnen, T.

    2002-11-01

    Classical molecular dynamics (MD) and combined em ab initio quantum mechanical/molecular mechanical molecular dynamics (QM/MM-MD) simulations have been performed to investigate structural, dynamical and energetical properties of Fe(II), and Fe(III) transition metal ions in aqueous solution. In the QM/MM-MD simulations the ion and its first hydration sphere were treated at the Hartree-Fock ab initio quantum mechanical level, while ab initio generated pair plus three-body potentials were employed for the remaining system. For the classical MD simulation the pair plus three-body potential were employed for all ion-water interactions. The coordination number of the first hydration shell is 100 % of 6 in both cases. The number of waters in the second hydration shell obtained from classical simulations are 13.4 and 15.1 for Fe(II) and Fe(III), respectively, while QM/MM-MD gives the values of 12.4 and 13.4 for Fe(II) and Fe(III). The energies of hydration obtained from MD and QM/MM-MD for Fe(II) are 520 and 500 kcal/mol, and for Fe(III) 1160 and 1100 kcal/mol respectively. The mean residence times of water in the second shell obtained from QM/MM-MD are 24 and 48 ps for Fe(II) and Fe(III), respectively. In contrast to the data obtained from classical MD simulation, the QM/MM-MD values are all in good agreement with the experimental data available. These investigations and results clearly indicate that many-body effects are essential for the proper description of all properties of the aqueous solution of both Fe(II) and Fe(III) ions. (author)

  3. Removal of colloidal biogenic selenium from wastewater.

    Science.gov (United States)

    Staicu, Lucian C; van Hullebusch, Eric D; Oturan, Mehmet A; Ackerson, Christopher J; Lens, Piet N L

    2015-04-01

    Biogenic selenium, Se(0), has colloidal properties and thus poses solid-liquid separation problems, such as poor settling and membrane fouling. The separation of Se(0) from the bulk liquid was assessed by centrifugation, filtration, and coagulation-flocculation. Se(0) particles produced by an anaerobic granular sludge are normally distributed, ranging from 50 nm to 250 nm, with an average size of 166±29 nm and a polydispersity index of 0.18. Due to its nanosize range and protein coating-associated negative zeta potential (-15 mV to -23 mV) between pH 2 and 12, biogenic Se(0) exhibits colloidal properties, hampering its removal from suspension. Centrifugation at different centrifugal speeds achieved 22±3% (1500 rpm), 73±2% (3000 rpm) and 91±2% (4500 rpm) removal. Separation by filtration through 0.45 μm filters resulted in 87±1% Se(0) removal. Ferric chloride and aluminum sulfate were used as coagulants in coagulation-flocculation experiments. Aluminum sulfate achieved the highest turbidity removal (92±2%) at a dose of 10(-3) M, whereas ferric chloride achieved a maximum turbidity removal efficiency of only 43±4% at 2.7×10(-4) M. Charge repression plays a minor role in particle neutralization. The sediment volume resulting from Al2(SO3)4 treatment is three times larger than that produced by FeCl3. Copyright © 2014 Elsevier Ltd. All rights reserved.

  4. Incidence of biogenic amines in foods implications for the Gambia ...

    African Journals Online (AJOL)

    Amines are found in food. Biogenic amines are a class of amines, which result from decarboxylation. They are food quality indicators. Health-wise biogenic amines play positive roles and have adverse effects as well; they are a public health concern. Certain conditions make it possible for them to be produced. These could ...

  5. Methyl chavicol: characterization of its biogenic emission rate

    NARCIS (Netherlands)

    Bouvier-Brown, N.C.; Goldstein, A.H.; Worton, D.R.; Matross, D.M.; Gilman, J.B.; Kuster, W.C.; Welsh-Bon, D.; Warneke, C.; de Gouw, J.A.; Cahill, M.J.; Holzinger, R.

    2009-01-01

    We report measurements of ambient atmospheric mixing ratios for methyl chavicol and determine its biogenic emission rate. Methyl chavicol, a biogenic oxygenated aromatic compound, is abundant within and above Blodgett Forest, a ponderosa pine forest in the Sierra Nevada Mountains of California.

  6. OmcB, a c-Type Polyheme Cytochrome, Involved in Fe(III) Reduction in Geobacter sulfurreducens

    OpenAIRE

    Leang, Ching; Coppi, M. V.; Lovley, D. R.

    2003-01-01

    Microorganisms in the family Geobacteraceae are the predominant Fe(III)-reducing microorganisms in a variety of subsurface environments in which Fe(III) reduction is an important process, but little is known about the mechanisms for electron transport to Fe(III) in these organisms. The Geobacter sulfurreducens genome was found to contain a 10-kb chromosomal duplication consisting of two tandem three-gene clusters. The last genes of the two clusters, designated omcB and omcC, encode putative o...

  7. Spectrophotometric speciation of Fe(II) and Fe(III) using hydrazone-micelle systems and flow injections

    International Nuclear Information System (INIS)

    Khojali, Inas Osman

    1999-04-01

    Two hydrazones were synthesised, namely salicylhyrazone (SH) and trihydroxyacetophenone (THAPH) were synthesised with the objective of developing a method for determining of Fe(II) and Fe(III) in the presence of each other and hence the total iron.those hydrazones were selected so as to combine the ability of phenolic compounds to complex Fe(III) ions and the complexing characteristics of hydrazones. The complexes of Fe(II) S H and Fe(III) S H as well those of Fe(II)-THAPH and Fe(III)-THAPH had shown maximum absorbance at λ=412 nm which was not not modified by presence of micelles i.e. sodium n-dodecyl sulphate (SDS) and n-hexa dodecyl pyridinium bromide. The maximum absorbance for all complexes takes place around a neutral pH. Generally, in addition, of n-hexa dodecylpyridinium bromide to fe(II)-SH and Fe(III)-SH absorbance of the complexes increases with increasing the concentration of the micelle. The effects of the addition of sodium n-dodecyle sulphate (SDS) to Fe(III)-SH is also studied. Generally, increasing the concentration of the micelle decrease the absorbance of the complexes. To study the effect of the presence of Fe(II) and Fe(III) on the determination of each other,mixtures of Fe(II)-SH and Fe(III)-SH are studied. However, the use of ascorbic acid as a reducing reagent for Fe(III) did not produce the needed results but non reducible results, which may be due to the masking effect of ascorbic acid and thus making the metal not available to the ligand. However, conversion of Fe(II) to Fe(III) prior to the determination was avoided as this requires the use of oxidant, which will oxidise the ligand as well. To establish the condition for the maximum absorbance of THAPH complexes, the effect of the base was investigated by using sodium and ammonium hydroxide. Generally, increasing the concentration of the base decreases the abosrbance. as expected, ammonium hydroxide produced positive results than sodium hydroxide. After establishing the optimum Fi

  8. Ionising radiation effect on the luminescence emission of inorganic and biogenic calcium carbonates

    Energy Technology Data Exchange (ETDEWEB)

    Boronat, C. [CIEMAT, Av. Complutense 40, Madrid 28040 (Spain); Correcher, V., E-mail: v.correcher@ciemat.es [CIEMAT, Av. Complutense 40, Madrid 28040 (Spain); Virgos, M.D. [CIEMAT, Av. Complutense 40, Madrid 28040 (Spain); Garcia-Guinea, J. [CSIC, Museo Nacional Ciencias Naturales, José Gutiérrez Abascal 2, Madrid 28006 (Spain)

    2017-06-15

    Highlights: • Aragonite and biogenic Ca-carbonates could be used as a TL dosimeters. • TL can be employed for retrospective dosimetry purposes. • Calcium carbonates show an acceptable ionizing radiation sensitivity. • The stability of the radiation–induced TL remains, at least, till 700 h. - Abstract: As known, the luminescence emission of mineral phases could be potentially employed for dosimetric purposes in the case of radiological terrorism or radiation accident where conventional monitoring is not available. In this sense, this paper reports on the thermo- (TL) and cathodoluminescence (CL) emission of both biogenic (common periwinkle – littorina littorera – shell made of calcite 90% and aragonite 10%) and inorganic (aragonite 100%) Ca-rich carbonates previously characterized by X-ray diffraction and Raman spectroscopy. Whereas the aragonite sample displays the main CL waveband peaked in the red region (linked to point defects), the more intense emission obtained from the common periwinkle shell appears at higher energies (mainly associated with structural defects). The UV-blue TL emission of the samples, regardless of the origin, displays (i) an acceptable ionizing radiation sensitivity, (ii) linear dose response in the range of interest (up to 8 Gy), (iii) reasonable stability of the TL signal after 700 h of storage with an initial decay of ca. 88% for the mineral sample and 60% for the biogenic sample and maintaining the stability from 150 h onwards. (iv) The tests of thermal stability of the TL emission performed in the range of 180–320 °C confirm a continuum in the trap system.

  9. Ionising radiation effect on the luminescence emission of inorganic and biogenic calcium carbonates

    International Nuclear Information System (INIS)

    Boronat, C.; Correcher, V.; Virgos, M.D.; Garcia-Guinea, J.

    2017-01-01

    Highlights: • Aragonite and biogenic Ca-carbonates could be used as a TL dosimeters. • TL can be employed for retrospective dosimetry purposes. • Calcium carbonates show an acceptable ionizing radiation sensitivity. • The stability of the radiation–induced TL remains, at least, till 700 h. - Abstract: As known, the luminescence emission of mineral phases could be potentially employed for dosimetric purposes in the case of radiological terrorism or radiation accident where conventional monitoring is not available. In this sense, this paper reports on the thermo- (TL) and cathodoluminescence (CL) emission of both biogenic (common periwinkle – littorina littorera – shell made of calcite 90% and aragonite 10%) and inorganic (aragonite 100%) Ca-rich carbonates previously characterized by X-ray diffraction and Raman spectroscopy. Whereas the aragonite sample displays the main CL waveband peaked in the red region (linked to point defects), the more intense emission obtained from the common periwinkle shell appears at higher energies (mainly associated with structural defects). The UV-blue TL emission of the samples, regardless of the origin, displays (i) an acceptable ionizing radiation sensitivity, (ii) linear dose response in the range of interest (up to 8 Gy), (iii) reasonable stability of the TL signal after 700 h of storage with an initial decay of ca. 88% for the mineral sample and 60% for the biogenic sample and maintaining the stability from 150 h onwards. (iv) The tests of thermal stability of the TL emission performed in the range of 180–320 °C confirm a continuum in the trap system.

  10. 2 : 2 Fe(III): ligand and "adamantane core" 4 : 2 Fe(III): ligand (hydr)oxo complexes of an acyclic ditopic ligand

    DEFF Research Database (Denmark)

    Ghiladi, Morten; Larsen, Frank B.; McKenzie, Christine J.

    2005-01-01

    crystalline platelets. The Fe4O6 core of 2 shows an adamantane-like structure: The six bridging oxygen atoms are provided by the two phenolato groups of the two bpbp(-) ligands, two bridging oxo groups and two bridging hydroxo groups. The hydroxo and oxo ligands could be distinguished on the basis of Fe - O......-ray structure of the dinuclear complex [{( Hbpbp) Fe(mu-OH)}(2)](ClO4)(4) center dot 2C(3)H(6)O ( 1 center dot 2C(3)H(6)O) shows that only one of the metal-binding cavities of each ligand is occupied by an iron( III) atom and two [Fe(Hbpbp)](3+) units are linked together by two hydroxo bridging groups to form...... a [ Fe(III) -(mu-OH)](2) rhomb structure with Fe center dot center dot center dot Fe = 3.109(1) angstrom. The non-coordinated tertiary amine of Hbpbp is protonated. Magnetic susceptibility measurements show a well-behaved weak antiferromagnetic coupling between the two Fe( III) atoms, J =- 8 cm(-1...

  11. Interactions of Eu(III) with biogenic CaCO{sub 3} studied with TRLFS

    Energy Technology Data Exchange (ETDEWEB)

    Johnstone, Erik V.; Schmidt, Moritz [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Div. Surface Processes; Cherkouk, Andrea [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Div. Biogeochemistry

    2016-07-01

    The interactions of Eu(III) with CaCO{sub 3} arising from biogenic origin was investigated by Time-Resolved Laser-Induced Fluorescence Spectroscopy (TRLFS). Biologically-induced precipitation via ureolysis was studied with the bacteria Sporosarcina pasteurii in the presence of Eu(III). Biomineralization occurred forming mixed phases of vaterite and calcite after one day that transformed over two weeks to pure calcite. Eu(III) was quantitatively removed from solution during mineral formation. TRLFS results show that after one day the Eu{sup 3+} is located in the vaterite phase. After one week, the Eu{sup 3+} was found primarily in the vaterite, despite calcite now being the predominant mineral, and a transition species was also formed. In the calcite two incorporated Eu{sup 3+} species were present: one substitutes at the Ca{sup 2+} site in the crystal lattice and the other is speculated to be associated with the organicmineral matrix.

  12. Total balance of biogenic fuels for thermal uses; Ganzheitliche Bilanzierung verschiedener biogener Festbrennstoffe zur thermischen Nutzung

    Energy Technology Data Exchange (ETDEWEB)

    Becher, S.; Kaltschmitt, M. [Stuttgart Univ. (Germany). Inst. fuer Energiewirtschaft und Rationelle Energieanwendung (IER)

    1996-12-31

    In this situation of unfavourable energy price levels, the use of biogenic fuels for power supply can be recommended only if it serves to reduce environmental pollution. Against this background and on the basis of a primary energy balance, the authors attempted a total balance of selected enfironmental effects (global heating and acidification potential) of biomass use as compared to fossil fuel combustion. (orig) [Deutsch] ie Nutzung biogener Festbrennstoffe zur Energienachfragedeckung ist bei dem gegenwaertigen unguenstigen Energiepreisniveau nur dann zu rechtfertigen, wenn es durch die Biomassenutzung zu einer Reduzierung der energiebedingten Umwelteffekte kommt. Vor disem Hintergrund werden ausgehend von der Primaerenergiebilanz ausgewaehlte Umwelteffekte (d.h. das Treibhaus- und das Versauerungspotential) einer Biomassenutzung im Vergleich zu einer Nutzung fossiler Energietraeger ganzheitlich bilanziert. Die wesentlichen Ergebnisse werden zusammengefasst und interpretiert. (orig)

  13. Iron Sulfide Minerals Record Microbe-Mineral Interactions in Anoxic Environments

    Science.gov (United States)

    Picard, A.; Gartman, A.; Cosmidis, J.; Clarke, D. R.; Girguis, P. R.

    2017-12-01

    The precipitation of most minerals in low-temperature environments on Earth is directly or indirectly influenced by the presence of organic substances and/or microbial biomass. Notably, the influence of microorganisms on the formation of Mn and Fe oxides/oxyhydroxides at the surface of the Earth has been well characterized (Chan et al., 2011; Estes et al., 2017). However, an oxygenated atmosphere is a unique feature of planet Earth. It is therefore critical for the search of life on other planetary bodies to characterize microbe-mineral interactions that form in anoxic conditions. Here we explore the role of microorganisms on the formation of iron sulfide minerals, which form under anoxic conditions. On modern Earth, sulfate-reducing microorganisms (SRM) are the major source of dissolved sulfide in low-temperature sedimentary environments. We experimentally demonstrate that SRM play a role in the nucleation and growth of iron sulfide minerals by acting as organic templates. The physical characteristics of the resulting minerals are different from those formed under abiotic conditions. Moreover, upon forming, iron sulfide minerals become associated with organic carbon, producing a potential organo-mineral signature. We also evaluate how the presence of various organic substances affect the formation of abiotic minerals and how this could produce false biosignatures that could be mistaken as biogenic minerals. Chan, C.S., Fakra, S.C., Emerson, D., Fleming, E.J. and Edwards, K.J. (2011) Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation. Isme Journal 5, 717-727. Estes, E.R., Andeer, P.F., Nordlund, D., Wankel, S.D. and Hansel, C.M. (2017) Biogenic manganese oxides as reservoirs of organic carbon and proteins in terrestrial and marine environments. Geobiology 15, 158-172.

  14. Microbial Reduction of Fe(III) in Acidic Sediments: Isolation of Acidiphilium cryptum JF-5 Capable of Coupling the Reduction of Fe(III) to the Oxidation of Glucose

    Science.gov (United States)

    Küsel, Kirsten; Dorsch, Tanja; Acker, Georg; Stackebrandt, Erko

    1999-01-01

    To evaluate the microbial populations involved in the reduction of Fe(III) in an acidic, iron-rich sediment, the anaerobic flow of supplemental carbon and reductant was evaluated in sediment microcosms at the in situ temperature of 12°C. Supplemental glucose and cellobiose stimulated the formation of Fe(II); 42 and 21% of the reducing equivalents that were theoretically obtained from glucose and cellobiose, respectively, were recovered in Fe(II). Likewise, supplemental H2 was consumed by acidic sediments and yielded additional amounts of Fe(II) in a ratio of approximately 1:2. In contrast, supplemental lactate did not stimulate the formation of Fe(II). Supplemental acetate was not consumed and inhibited the formation of Fe(II). Most-probable-number estimates demonstrated that glucose-utilizing acidophilic Fe(III)-reducing bacteria approximated to 1% of the total direct counts of 4′,6-diamidino-2-phenylindole-stained bacteria. From the highest growth-positive dilution of the most-probable-number series at pH 2.3 supplemented with glucose, an isolate, JF-5, that could dissimilate Fe(III) was obtained. JF-5 was an acidophilic, gram-negative, facultative anaerobe that completely oxidized the following substrates via the dissimilation of Fe(III): glucose, fructose, xylose, ethanol, glycerol, malate, glutamate, fumarate, citrate, succinate, and H2. Growth and the reduction of Fe(III) did not occur in the presence of acetate. Cells of JF-5 grown under Fe(III)-reducing conditions formed blebs, i.e., protrusions that were still in contact with the cytoplasmic membrane. Analysis of the 16S rRNA gene sequence of JF-5 demonstrated that it was closely related to an Australian isolate of Acidiphilium cryptum (99.6% sequence similarity), an organism not previously shown to couple the complete oxidation of sugars to the reduction of Fe(III). These collective results indicate that the in situ reduction of Fe(III) in acidic sediments can be mediated by heterotrophic Acidiphilium

  15. Controlled cobalt doping in biogenic magnetite nanoparticles

    Science.gov (United States)

    Byrne, J. M.; Coker, V. S.; Moise, S.; Wincott, P. L.; Vaughan, D. J.; Tuna, F.; Arenholz, E.; van der Laan, G.; Pattrick, R. A. D.; Lloyd, J. R.; Telling, N. D.

    2013-01-01

    Cobalt-doped magnetite (CoxFe3 −xO4) nanoparticles have been produced through the microbial reduction of cobalt–iron oxyhydroxide by the bacterium Geobacter sulfurreducens. The materials produced, as measured by superconducting quantum interference device magnetometry, X-ray magnetic circular dichroism, Mössbauer spectroscopy, etc., show dramatic increases in coercivity with increasing cobalt content without a major decrease in overall saturation magnetization. Structural and magnetization analyses reveal a reduction in particle size to less than 4 nm at the highest Co content, combined with an increase in the effective anisotropy of the magnetic nanoparticles. The potential use of these biogenic nanoparticles in aqueous suspensions for magnetic hyperthermia applications is demonstrated. Further analysis of the distribution of cations within the ferrite spinel indicates that the cobalt is predominantly incorporated in octahedral coordination, achieved by the substitution of Fe2+ site with Co2+, with up to 17 per cent Co substituted into tetrahedral sites. PMID:23594814

  16. Controlled cobalt doping in biogenic magnetite nanoparticles.

    Science.gov (United States)

    Byrne, J M; Coker, V S; Moise, S; Wincott, P L; Vaughan, D J; Tuna, F; Arenholz, E; van der Laan, G; Pattrick, R A D; Lloyd, J R; Telling, N D

    2013-06-06

    Cobalt-doped magnetite (CoxFe3 -xO4) nanoparticles have been produced through the microbial reduction of cobalt-iron oxyhydroxide by the bacterium Geobacter sulfurreducens. The materials produced, as measured by superconducting quantum interference device magnetometry, X-ray magnetic circular dichroism, Mössbauer spectroscopy, etc., show dramatic increases in coercivity with increasing cobalt content without a major decrease in overall saturation magnetization. Structural and magnetization analyses reveal a reduction in particle size to less than 4 nm at the highest Co content, combined with an increase in the effective anisotropy of the magnetic nanoparticles. The potential use of these biogenic nanoparticles in aqueous suspensions for magnetic hyperthermia applications is demonstrated. Further analysis of the distribution of cations within the ferrite spinel indicates that the cobalt is predominantly incorporated in octahedral coordination, achieved by the substitution of Fe(2+) site with Co(2+), with up to 17 per cent Co substituted into tetrahedral sites.

  17. Climate/chemistry feedbacks and biogenic emissions.

    Science.gov (United States)

    Pyle, John A; Warwick, Nicola; Yang, Xin; Young, Paul J; Zeng, Guang

    2007-07-15

    The oxidizing capacity of the atmosphere is affected by anthropogenic emissions and is projected to change in the future. Model calculations indicate that the change in surface ozone at some locations could be large and have significant implications for human health. The calculations depend on the precise scenarios used for the anthropogenic emissions and on the details of the feedback processes included in the model. One important factor is how natural biogenic emissions will change in the future. We carry out a sensitivity calculation to address the possible increase in isoprene emissions consequent on increased surface temperature in a future climate. The changes in ozone are significant but depend crucially on the background chemical regime. In these calculations, we find that increased isoprene will increase ozone in the Northern Hemisphere but decrease ozone in the tropics. We also consider the role of bromine compounds in tropospheric chemistry and consider cases where, in a future climate, the impact of bromine could change.

  18. Biogenic amines in Portuguese traditional foods and wines.

    Science.gov (United States)

    Ferreira, Isabel M P L V O; Pinho, Olívia

    2006-09-01

    The presence of biogenic amines in foodstuffs is an important food safety problem because of the implication of these compounds in food intolerance and intoxication. The separation and quantification of biogenic amines in foods is normally performed by chromatographic techniques. This review contains descriptions of the quantification of biogenic amines in Portuguese traditional fermented and/or ripened foods and wines, including Protected Denomination of Origin cheeses, dry-cured sausages, and Portuguese wines (including Port wines), using different analytical methods based on high-pressure liquid chromatography (UV or diode array and/or fluorometric detectors) and gas chromatography (with a mass spectrometry detector). The evolution of biogenic amines during fermentation, ripening, aging, or storage of those products was also evaluated. Biogenic amine concentrations ranged widely within individual food items, and storage, transport, and handling conditions can influence to some extent the biogenic amines present and their concentrations. Traditional foods are an important part of the Portuguese diet, and a high intake of harmful amounts of biogenic amines from traditional Portuguese fermented foods is possible. However, extensive research is needed to extend the current limited database.

  19. A Hierarchical System for Evaluating the Biogenicity of Metavolcanic- and Ultramafic-Hosted Microalteration Textures in the Search for Extraterrestrial Life.

    Science.gov (United States)

    McLoughlin, Nicola; Grosch, Eugene G

    2015-10-01

    The low-temperature alteration of submarine volcanic glasses has been argued to involve the activity of microorganisms, and analogous fluid-rock-microbial-mediated alteration has also been postulated on Mars. However, establishing the extent to which microbes are involved in volcanic glass alteration has proven to be difficult, and the reliability of resulting textural biosignatures is debated, particularly in the early rock record. We therefore propose a hierarchical scheme to evaluate the biogenicity of candidate textural biosignatures found in altered terrestrial and extraterrestrial basaltic glasses and serpentinized ultramafic rocks. The hierarchical scheme is formulated to give increasing confidence of a biogenic origin and involves (i) investigation of the textural context and syngenicity of the candidate biosignature; (ii) characterization of the morphology and size range of the microtextures; (iii) mapping of the geological and physicochemical variables controlling the occurrence and preservation of the microtextures; (iv) in situ investigation of chemical signatures that are syngenetic to the microtexture; and (v) identification of growth patterns suggestive of biological behavior and redox variations in the host minerals. The scheme results in five categories of candidate biosignature as follows: Category 1 indicates preservation of very weak evidence for biogenicity, Categories 2 through 4 indicate evidence for increasing confidence of a biogenic origin, and Category 5 indicates that biogenic origin is most likely. We apply this hierarchical approach to examine the evidence for a biogenic origin of several examples, including candidate bacterial encrustations in altered pillow lavas, granular and tubular microtextures in volcanic glass from the subseafloor and a Phanerozoic ophiolite, mineralized microtextures in Archean metavolcanic glass, and alteration textures in olivines of the martian meteorite Yamato 000593. The aim of this hierarchical approach

  20. Condutividade da Polianilina e Poliacrilonitrila Dopadas com Fe(II e Fe(III

    Directory of Open Access Journals (Sweden)

    Yonis Fornazier Filho

    2015-01-01

    Full Text Available In this work we report O estudo da interação de íons Fe(II com a polianilina foi feito através da obtenção deste polímero na forma de salthe studies on Polyaniline Emeraldine (PANI-ES and Polyacrilonitrile (PAN doped with salt of Fe (II and Fe(III. We used the techniques of conductivity measurements with aplicação de pressão.application of pressure.  The results showed that conductivity of PANI-ES increase with pressure of range of 1.73 MPa until 20.0 MPa and PAN also increase with maximum of 6.0 mPa except to samples PAN-2-TT-FeIII and PAN-2-TTAA-FeIII.

  1. Biological activity of Fe(III) aquo-complexes towards ferric chelate reductase (FCR).

    Science.gov (United States)

    Escudero, Rosa; Gómez-Gallego, Mar; Romano, Santiago; Fernández, Israel; Gutiérrez-Alonso, Ángel; Sierra, Miguel A; López-Rayo, Sandra; Nadal, Paloma; Lucena, Juan J

    2012-03-21

    In this study we have obtained experimental evidence that confirms the high activity of aquo complexes III and IV towards the enzyme FCR, responsible for the reduction of Fe(III) to Fe(II) in the process of iron acquisition by plants. The in vivo FCR assays in roots of stressed cucumber plants have shown a higher efficiency of the family of complexes III and a striking structure-activity relationship with the nature of the substituent placed in a phenyl group far away from the metal center. The results obtained in this work demonstrate that all the aquo compounds tested interact efficiently with the enzyme FCR and hence constitute a new concept of iron chelates that could be of great use in agronomy.

  2. Biogenic amines degradation by microorganisms isolated from cheese

    Directory of Open Access Journals (Sweden)

    Irena Butor

    2017-01-01

    Full Text Available The aim of this study was the isolation and characterization of microorganisms able to degrade biogenic amines and their identification. Individual microorganisms were obtained by isolation from commercially available foodstuffs and food produced in the technological laboratories of Faculty of Technology, Tomas Bata University in Zlín and subsequently identified by MALDI-TOF MS. The results of MALDI-TOF MS identification were verified by 16S rRNA sequenation. In this work was studied the ability of 5 bacterial strains positive to biogenic amines degradation isolated from dairy products to decrease biogenic amines content in vitro and quantified reduction in the concentration of biogenic amines tryptamine, β-phenylethylamine, putrescine, cadaverine, histamine and tyramine. The level of degradation (decrease of biogenic amines was determined on the base of the ability to grow in media with biogenic amines as the sole source carbon and nitrogen. The isolated strains with the ability of degradation of one or more biogenic amines were cultured in medium supplemented with relevant biogenic amines, the media derivatized with dansyl chloride and these amines separated by HPLC at a wavelength of 254 nm. From five tested strains identified as Bacillus subtilis, Bacillus pumilus, Enterobacter cloacae, Rhizobium radiobacter and Acinetobacter pitii, isolated from gouda type cheese, the greatest ability of degradation was observed in Bacillus subtilis, which was capable to degrade almost all amount of histamine, cadaverine and putrescine. Other four strains showed a lower rate of degradation than Bacillus subtilis, but the ability to degrade biogenic amines with these microorganisms was still significant.

  3. Phase transitions in biogenic amorphous calcium carbonate.

    Science.gov (United States)

    Gong, Yutao U T; Killian, Christopher E; Olson, Ian C; Appathurai, Narayana P; Amasino, Audra L; Martin, Michael C; Holt, Liam J; Wilt, Fred H; Gilbert, P U P A

    2012-04-17

    Crystalline biominerals do not resemble faceted crystals. Current explanations for this property involve formation via amorphous phases. Using X-ray absorption near-edge structure (XANES) spectroscopy and photoelectron emission microscopy (PEEM), here we examine forming spicules in embryos of Strongylocentrotus purpuratus sea urchins, and observe a sequence of three mineral phases: hydrated amorphous calcium carbonate (ACC · H(2)O) → dehydrated amorphous calcium carbonate (ACC) → calcite. Unexpectedly, we find ACC · H(2)O-rich nanoparticles that persist after the surrounding mineral has dehydrated and crystallized. Protein matrix components occluded within the mineral must inhibit ACC · H(2)O dehydration. We devised an in vitro, also using XANES-PEEM, assay to identify spicule proteins that may play a role in stabilizing various mineral phases, and found that the most abundant occluded matrix protein in the sea urchin spicules, SM50, stabilizes ACC · H(2)O in vitro.

  4. Mineral evolution and Earth history

    Science.gov (United States)

    Bradley, Dwight C.

    2015-01-01

    The field of mineral evolution—a merger of mineralogy and Earth history—coalesced in 2008 with the first of several global syntheses by Robert Hazen and coworkers in the American Mineralogist. They showed that the cumulative abundance of mineral species has a stepwise trend with first appearances tied to various transitions in Earth history such as the end of planetary accretion at ca. 4.55 Ga and the onset of bio-mediated mineralogy at ca. >2.5 Ga. A global age distribution is best established for zircon. Observed abundance of zircon fluctuates through more than an order of magnitude during successive supercontinent cycles. The pulse of the Earth is also recorded, albeit imperfectly, by the 87Sr/86Sr composition of marine biogenic calcite; the Sr-isotopic ratio of this mineral reflects the balance of inputs of primitive strontium at mid-ocean ridges and evolved strontium that drains off the continents. A global mineral evolution database, currently in the works, will greatly facilitate the compilation and analysis of extant data and the expansion of research in mineralogy outside its traditional bounds and into more interdisciplinary realms.

  5. Fe(III) hydroxide nucleation and growth on quartz in the presence of Cu(II), Pb(II), and Cr(III): metal hydrolysis and adsorption.

    Science.gov (United States)

    Dai, Chong; Hu, Yandi

    2015-01-06

    Fe(III) hydroxide nanoparticles are an essential carrier for aqueous heavy metals. Particularly, iron hydroxide precipitation on mineral surfaces can immobilize aqueous heavy metals. Here, we used grazing-incidence small-angle X-ray scattering (GISAXS) to quantify nucleation and growth of iron hydroxide on quartz in 0.1 mM Fe(NO3)3 solution in the presence of Na(+), Cu(2+), Pb(2+), or Cr(3+) at pH = 3.7 ± 0.1. In 30 min, the average radii of gyration (R(g)) of particles on quartz grew from around 2 to 6 nm in the presence of Na(+) and Cu(2+). Interestingly, the particle sizes remained 3.3 ± 0.3 nm in the presence of Pb(2+), and few particles formed in the presence of Cr(3+). Quartz crystal microbalance dissipation (QCM-D) measurements showed that only Cr(3+) adsorbed onto quartz, while Cu(2+) and Pb(2+) did not. Cr(3+) adsorption changed the surface charge of quartz from negative to positive, thus inhibiting the precipitation of positively charged iron hydroxide on quartz. Masses and compositions of the precipitates were also quantified. This study provided new insights on interactions among quartz, iron hydroxide, and metal ions. Such information is helpful not only for environmental remediation but also for the doping design of iron oxide catalysts.

  6. Advanced Experimental Analysis of Controls on Microbial Fe(III) Oxide Reduction - Final Report - 09/16/1996 - 03/16/2001; FINAL

    International Nuclear Information System (INIS)

    Roden, Eric E.

    2001-01-01

    Considering the broad influence that microbial Fe(III) oxide reduction can have on subsurface metal/organic contaminant biogeochemistry, understanding the mechanisms that control this process is critical for predicting the behavior and fate of these contaminants in anaerobic subsurface environments. Knowledge of the factors that influence the rates of growth and activity of Fe(III) oxide-reducing bacteria is critical for predicting (i.e., modeling) the long-term influence of these organisms on the fate of contaminants in the subsurface, and for effectively utilizing Fe(III) oxide reduction and associated geochemical affects for the purpose of subsurface metal/organic contamination bioremediation. This research project will refine existing models for microbiological and geochemical controls on Fe(III) oxide reduction, using laboratory reactor systems that mimic, to varying degrees, the physical and chemical conditions of the subsurface. Novel experimental methods for studying the kinetics of microbial Fe(III) oxide reduction and measuring growth rates of Fe(III) oxide-reducing bacteria will be developed. These new methodologies will be directly applicable to studies on subsurface contaminant transformations directly coupled to or influenced by microbial Fe(III) oxide reduction

  7. Biogenic Sulfur in the Siple Dome Ice Core, Version 1

    Data.gov (United States)

    National Aeronautics and Space Administration — This data set is a continuous, high-resolution record of biogenic sulfur (methanesulfonate, known as MSA and CH3SO3-) in the 1000 m deep Siple Dome A (SDMA) core,...

  8. Biogenic hydrocarbon emission estimates for North Central Texas

    Energy Technology Data Exchange (ETDEWEB)

    Wiedinmyer, C.; Wade Strange, I.; Allen, D.T. [University of Texas at Austin (United States). Dept. of Chemical Engineering; Estes, M. [Texas Natural Resource Conservation Commission, Austin, TX (United States); Yarwood, G. [ENVIRON International Corporation, Novato, CA (United States)

    2000-07-01

    Biogenic hydrocarbon emissions were estimated for a 37 county region in North Central Texas. The estimates were based on several sources of land use/land cover data that were combined using geographical information systems. Field studies were performed to collect species and tree diameter distribution data. These data were used to estimate biomass densities and species distributions for each of the land use and cover classifications. VOC emissions estimates for the domain were produced using the new land use/land cover data and a biogenic emissions model. These emissions were more spatially resolved and a factor of 2 greater in magnitude than those calculated based on the biogenic emissions landuse database (BELD) commonly used in biogenic emissions models. (author)

  9. Biogenic sulfur compounds and the global sulfur cycle

    International Nuclear Information System (INIS)

    Aneja, V.P.; Aneja, A.P.; Adams, D.F.

    1982-01-01

    Field measurements of biogenic sulfur compounds shows a great variation in concentrations and emission rates for H 2 S, DMS, CS 2 and COS. Measurements by the chamber method and estimates from micrometeorological sampling are employed to determine the earth-atmosphere flux of these gases. Much of the variation can be attributed to differences of climate and surface conditions, with marshes being a large source of biogenic sulfur (mean contribution 4 x 10 to the 6th ton/year maximum contribution 142 x 10 to the 6th ton/year). Considering that the estimated biogenic contribution needed to balance the global sulfur cycle ranges from 40- 230 x 10 to the 6th tons/year, the mean values are not sufficient to balance this cycle. Further experimental investigations are suggested in order to characterize the biogenic processes adequately

  10. Quantifying the Global Marine Biogenic Nitrogen Oxides Emissions

    Science.gov (United States)

    Su, H.; Wang, S.; Lin, J.; Hao, N.; Poeschl, U.; Cheng, Y.

    2017-12-01

    Nitrogen oxides (NOx) are among the most important molecules in atmospheric chemistry and nitrogen cycle. The NOx over the ocean areas are traditionally believed to originate from the continental outflows or the inter-continental shipping emissions. By comparing the satellite observations (OMI) and global chemical transport model simulation (GEOS-Chem), we suggest that the underestimated modeled atmospheric NO2 columns over biogenic active ocean areas can be possibly attributed to the biogenic source. Nitrification and denitrification in the ocean water produces nitrites which can be further reduced to NO through microbiological processes. We further report global distributions of marine biogenic NO emissions. The new added emissions improve the agreement between satellite observations and model simulations over large areas. Our model simulations manifest that the marine biogenic NO emissions increase the atmospheric oxidative capacity and aerosol formation rate, providing a closer link between atmospheric chemistry and ocean microbiology.

  11. Impact of biogenic nanoscale metals Fe, Cu, Zn and Se on reproductive LV chickens

    International Nuclear Information System (INIS)

    Nguyen, Quy Khiem; Nguyen, Van Kien; Nguyen, Khac Thinh; Nguyen, Duy Dieu; Nguyen, Hoai Chau; Tran, Xuan Tin; Nguyen, Huu Cuong; Phung, Duc Tien

    2015-01-01

    Using biogenic nanoscale metals (Fe, Cu, ZnO, Se) to supplement into diet premix of reproductive LV (a Vietnamese Luong Phuong chicken breed) chickens resulted in certain improvement of poultry farming. The experimental data obtained showed that the farming indices depend mainly on the quantity of nanocrystalline metals which replaced the inorganic mineral component in the feed premix. All four experimental groups with different quantities of the replacement nano component grew and developed normally with livability reaching 91 to 94%, hen’s bodyweight at 38 weeks of age and egg weight ranged from 2.53–2.60 kg/hen and 50.86–51.55 g/egg, respectively. All these farming indices together with laying rate, egg productivity and chick hatchability peaked at group 5 with 25% of nanoscale metals compared to the standard inorganic mineral supplement, while feed consumption was lowest. The results also confirmed that nanocrystalline metals Fe, Cu, ZnO and Se supplemented to chicken feed were able to decrease inorganic minerals in the diet premixes at least four times, allowing animals to more effectively absorb feed minerals, consequently decreasing environmental pollution risks. (paper)

  12. Energy-level matching of Fe(III) ions grafted at surface and doped in bulk for efficient visible-light photocatalysts.

    Science.gov (United States)

    Liu, Min; Qiu, Xiaoqing; Miyauchi, Masahiro; Hashimoto, Kazuhito

    2013-07-10

    Photocatalytic reaction rate (R) is determined by the multiplication of light absorption capability (α) and quantum efficiency (QE); however, these two parameters generally have trade-off relations. Thus, increasing α without decreasing QE remains a challenging issue for developing efficient photocatalysts with high R. Herein, using Fe(III) ions grafted Fe(III) doped TiO2 as a model system, we present a novel method for developing visible-light photocatalysts with efficient R, utilizing the concept of energy level matching between surface-grafted Fe(III) ions as co-catalysts and bulk-doped Fe(III) ions as visible-light absorbers. Photogenerated electrons in the doped Fe(III) states under visible-light efficiently transfer to the surface grafted Fe(III) ions co-catalysts, as the doped Fe(III) ions in bulk produced energy levels below the conduction band of TiO2, which match well with the potential of Fe(3+)/Fe(2+) redox couple in the surface grafted Fe(III) ions. Electrons in the surface grafted Fe(III) ions efficiently cause multielectron reduction of adsorbed oxygen molecules to achieve high QE value. Consequently, the present Fe(III)-FexTi1-xO2 nanocomposites exhibited the highest visible-light R among the previously reported photocatalysts for decomposition of gaseous organic compounds. The high R can proceed even under commercial white-light emission diode irradiation and is very stable for long-term use, making it practically useful. Further, this efficient method could be applied in other wide-band gap semiconductors, including ZnO or SrTiO3, and may be potentially applicable for other photocatalysis systems, such as water splitting, CO2 reduction, NOx removal, and dye decomposition. Thus, this method represents a strategic approach to develop new visible-light active photocatalysts for practical uses.

  13. Mg isotope fractionation in biogenic carbonates of deep-sea coral, benthic foraminifera, and hermatypic coral.

    Science.gov (United States)

    Yoshimura, Toshihiro; Tanimizu, Masaharu; Inoue, Mayuri; Suzuki, Atsushi; Iwasaki, Nozomu; Kawahata, Hodaka

    2011-11-01

    High-precision Mg isotope measurements by multiple collector inductively coupled plasma mass spectrometry were applied for determinations of magnesium isotopic fractionation of biogenic calcium carbonates from seawater with a rapid Mg purification technique. The mean δ(26)Mg values of scleractinian corals, giant clam, benthic foraminifera, and calcite deep-sea corals were -0.87‰, -2.57‰, -2.34‰, and -2.43‰, suggesting preferential precipitation of light Mg isotopes to produce carbonate skeleton in biomineralization. Mg isotope fractionation in deep-sea coral, which has high Mg calcite skeleton, showed a clear temperature (T) dependence from 2.5 °C to 19.5 °C: 1,000 × ln(α) = -2.63 (±0.076) + 0.0138 (±0.0051) × T(R(2) = 0.82, p coral. Since the precipitation rates of deep-sea coral and benthic foraminifera are several orders of magnitude different, the results suggest that kinetic isotope fractionation may not be a major controlling factor for high-Mg calcite. The Mg isotope fractionation factors and the slope of temperature dependence from deep-sea corals and benthic foraminifera are similar to that for an inorganically precipitated calcite speleothem. Taking into account element partitioning and the calcification rate of biogenic CaCO(3), the similarity among inorganic minerals, deep-sea corals, and benthic foraminiferas may indicate a strong mineralogical control on Mg isotope fractionation for high-Mg calcite. On the other hand, δ(26)Mg in hermatypic corals composed of aragonite has been comparable with previous data on biogenic aragonite of coral, sclerosponges, and scaphopad, regardless of species differences of samples.

  14. Coordination chemistry and hydrolysis of Fe(III) in a peat humic acid studied by X-ray absorption spectroscopy

    Science.gov (United States)

    Karlsson, Torbjörn; Persson, Per

    2010-01-01

    The speciation of iron (Fe) in soils, sediments and surface waters is highly dependent on chemical interactions with natural organic matter (NOM). However, the molecular structure and hydrolysis of the Fe species formed in association with NOM is still poorly described. In this study extended X-ray absorption fine structure (EXAFS) spectroscopy was used to determine the coordination chemistry and hydrolysis of Fe(III) in solution of a peat humic acid (5010-49,200 μg Fe g -1 dry weight, pH 3.0-7.2). Data were analyzed by both conventional EXAFS data fitting and by wavelet transforms in order to facilitate the identification of the nature of backscattering atoms. Our results show that Fe occurs predominantly in the oxidized form as ferric ions and that the speciation varies with pH and Fe concentration. At low Fe concentrations (5010-9920 μg g -1; pH 3.0-7.2) mononuclear Fe(III)-NOM complexes completely dominates the speciation. The determined bond distances for the Fe(III)-NOM complexes are similar to distances obtained for Fe(III) complexed by desferrioxamine B and oxalate indicating the formation of a five-membered chelate ring structure. At higher Fe concentrations (49,200 μg g -1; pH 4.2-6.9) we detect a mixture of mononuclear Fe(III)-NOM complexes and polymeric Fe(III) (hydr)oxides with an increasing amount of Fe(III) (hydr)oxides at higher pH. However, even at pH 6.9 and a Fe concentration of 49,200 μg g -1 our data indicates that a substantial amount of the total Fe (>50%) is in the form of organic complexes. Thus, in environments with significant amounts of organic matter organic Fe complexes will be of great importance for the geochemistry of Fe. Furthermore, the formation of five-membered chelate ring structures is in line with the strong complexation and limited hydrolytic polymerization of Fe(III) in our samples and also agrees with EXAFS derived structures of Fe(III) in organic soils.

  15. Biogenic antimicrobial silver nanoparticles produced by fungi.

    Science.gov (United States)

    Rodrigues, Alexandre G; Ping, Liu Yu; Marcato, Priscyla D; Alves, Oswaldo L; Silva, Maria C P; Ruiz, Rita C; Melo, Itamar S; Tasic, Ljubica; De Souza, Ana O

    2013-01-01

    Aspergillus tubingensis and Bionectria ochroleuca showed excellent extracellular ability to synthesize silver nanoparticles (Ag NP), spherical in shape and 35 ± 10 nm in size. Ag NP were characterized by transmission electron microscopy, X-ray diffraction analysis, and photon correlation spectroscopy for particle size and zeta potential. Proteins present in the fungal filtrate and in Ag NP dispersion were analyzed by electrophoresis (sodium dodecyl sulfate polyacrylamide gel electrophoresis). Ag NP showed pronounced antifungal activity against Candida sp, frequently occurring in hospital infections, with minimal inhibitory concentration in the range of 0.11-1.75 μg/mL. Regarding antibacterial activity, nanoparticles produced by A. tubingensis were more effective compared to the other fungus, inhibiting 98.0 % of Pseudomonas. aeruginosa growth at 0.28 μg/mL. A. tubingensis synthesized Ag NP with surprisingly high and positive surface potential, differing greatly from all known fungi. These data open the possibility of obtaining biogenic Ag NP with positive surface potential and new applications.

  16. Biogenic volatile emissions from the soil.

    Science.gov (United States)

    Peñuelas, J; Asensio, D; Tholl, D; Wenke, K; Rosenkranz, M; Piechulla, B; Schnitzler, J P

    2014-08-01

    Volatile compounds are usually associated with an appearance/presence in the atmosphere. Recent advances, however, indicated that the soil is a huge reservoir and source of biogenic volatile organic compounds (bVOCs), which are formed from decomposing litter and dead organic material or are synthesized by underground living organism or organs and tissues of plants. This review summarizes the scarce available data on the exchange of VOCs between soil and atmosphere and the features of the soil and particle structure allowing diffusion of volatiles in the soil, which is the prerequisite for biological VOC-based interactions. In fact, soil may function either as a sink or as a source of bVOCs. Soil VOC emissions to the atmosphere are often 1-2 (0-3) orders of magnitude lower than those from aboveground vegetation. Microorganisms and the plant root system are the major sources for bVOCs. The current methodology to detect belowground volatiles is described as well as the metabolic capabilities resulting in the wealth of microbial and root VOC emissions. Furthermore, VOC profiles are discussed as non-destructive fingerprints for the detection of organisms. In the last chapter, belowground volatile-based bi- and multi-trophic interactions between microorganisms, plants and invertebrates in the soil are discussed. © 2014 John Wiley & Sons Ltd.

  17. Impact of Bioreduction on Remobilization of Adsorbed Cadmium on Iron Minerals in Anoxic Condition.

    Science.gov (United States)

    Ghorbanzadeh, Nasrin; Lakzian, Amir; Halajnia, Akram; Choi, Ui-Kyu; Kim, Ki-Hyun; Kim, Jong-Oh; Kurade, Mayur; Jeon, Byong-Hun

    2017-06-01

      The impact of bioreduction on the remobilization of adsorbed cadmium Cd(II) on minerals, including hematite, goethite, and two iron(III)-rich clay minerals nontronites (NAU-1 and NAU-2) under anoxic conditions was investigated. Langmuir isotherm equation better described the sorption of Cd(II) onto the all minerals. The maximum adsorption capacity was 6.2, 18.1, 3.6, and 4 mg g-1 for hematite, goethite, NAU-1 and NAU-2, respectively. The desorption of Cd(II) was due to the production of Fe(II) as a result of bioreduction of structural Fe(III) in the minerals by Shewanella putrefaciens. The bioreduction of Cd(II)-loaded Fe(III) minerals was negligible during the initial 5 days followed by a rapid increase up to 20 days. The amount of Cd(II) in solution phase at the end of 30 days increased up to 0.07 mmol L-1 for hematite, NAU-1, and NAU-2 and 0.02 mmol L-1 for goethite. The X-ray diffraction study showed negligible changes in bioreduced minerals phases.

  18. Natural Minerals Coated by Biopolymer Chitosan: Synthesis, Physicochemical, and Adsorption Properties

    Science.gov (United States)

    Budnyak, T. M.; Yanovska, E. S.; Kichkiruk, O. Yu.; Sternik, D.; Tertykh, V. A.

    2016-11-01

    Natural minerals are widely used in treatment technologies as mineral fertilizer, food additive in animal husbandry, and cosmetics because they combine valuable ion-exchanging and adsorption properties together with unique physicochemical and medical properties. Saponite (saponite clay) of the Ukrainian Podillya refers to the class of bentonites, a subclass of layered magnesium silicate montmorillonite. Clinoptilolits are aluminosilicates with carcase structure. In our work, we have coated biopolymer chitosan on the surfaces of natural minerals of Ukrainian origin — Podilsky saponite and Sokyrnitsky clinoptilolite. Chitosan mineral composites have been obtained by crosslinking of adsorbed biopolymer on saponite and clinoptilolite surface with glutaraldehyde. The obtained composites have been characterized by the physicochemical methods such as thermogravimetric/differential thermal analyses (DTA, DTG, TG), differential scanning calorimetry, mass analysis, nitrogen adsorption/desorption isotherms, scanning electron microscopy (SEM), and Fourier transform infrared (FTIR) spectroscopy to determine possible interactions between the silica and chitosan molecule. The adsorption of microquantities of cations Cu(II), Zn(II), Fe(III), Cd(II), and Pb(II) by the obtained composites and the initial natural minerals has been studied from aqueous solutions. The sorption capacities and kinetic adsorption characteristics of the adsorbents were estimated. It was found that the obtained results have shown that the ability of chitosan to coordinate heavy metal ions Zn(II), Cu(II), Cd(II), and Fe(III) is less or equal to the ability to retain ions of these metals in the pores of minerals without forming chemical bonds.

  19. Assessing the potential for using biogenic calcites as dosemeters for luminescence dating

    International Nuclear Information System (INIS)

    Duller, G.A.T.; Penkman, K.E.H.; Wintle, A.G.

    2009-01-01

    Calcium carbonate emits an intense thermoluminescence (TL) signal and previous work has explored the potential of using this signal to date both inorganic carbonates such as limestones and stalagmites and biogenic calcite produced by marine organisms. Luminescence analysis of biogenic calcites directly dates the secretion of the mineral by the organism and is therefore not reliant upon exposure of the sample to daylight. A method is outlined for using the TL signals from slug plates, from the Limacidae family, and opercula from the snail Bithynia tentaculata to construct a single-aliquot regenerative-dose growth curve. Analysis of slug plates from a number of Quaternary sites show that the equivalent dose (D e ) of a late Holocene sample is close to zero and that the D e increases with age over the last 500 ka. The TL signal from snail opercula is shown to increase up to doses over 4000 Gy. Replicate measurements from 16 opercula from a site ∼220 ka show a broad distribution. Potential causes of this scatter are discussed along with recommendations about how it could be reduced. The major challenge which remains to be solved before slug plates or snail opercula could be used to calculate ages is to develop methods for calculating the dose rate received during burial.

  20. Fe-Impregnated Mineral Colloids for Peroxide Activation: Effects of Mineral Substrate and Fe Precursor.

    Science.gov (United States)

    Li, Yue; Machala, Libor; Yan, Weile

    2016-02-02

    Heterogeneous iron species at the mineral/water interface are important catalysts for the generation of reactive oxygen species at circumneutral pH. One significant pathway leading to the formation of such species arises from deposition of dissolved iron onto mineral colloids due to changes in redox conditions. This study investigates the catalytic properties of Fe impregnated on silica, alumina, and titania nanoparticles (as prototypical mineral colloids). Fe impregnation was carried out by immersing the mineral nanoparticles in dilute Fe(II) or Fe(III) solutions at pH 6 and 3, respectively, in an aerobic environment. The uptake of iron per unit surface area follows the order of nTiO2 > nAl2O3 > nSiO2 for both types of Fe precursors. Impregnation of mineral particles in Fe(II) solutions results in predominantly Fe(III) species due to efficient surface-mediated oxidation. The catalytic activity of the impregnated solids to produce hydroxyl radical (·OH) from H2O2 decomposition was evaluated using benzoic acid as a probe compound under dark conditions. Invariably, the rates of benzoic acid oxidation with different Fe-laden particles increase with the surface density of Fe until a critical density above which the catalytic activity approaches a plateau, suggesting active Fe species are formed predominantly at low surface loadings. The critical surface density of Fe varies with the mineral substrate as well as the aqueous Fe precursor. Fe impregnated on TiO2 exhibits markedly higher activity than its Al2O3 and SiO2 counterparts. The speciation of interfacial Fe is analyzed with diffuse reflectance UV-vis analysis and interpretation of the data in the context of benzoic oxidation rates suggests that the surface activity of the solids for ·OH generation correlates strongly with the isolated (i.e., mononuclear) Fe species. Therefore, iron dispersed on mineral colloids is a significant form of reactive iron surfaces in the aquatic environment.

  1. Equilibrium Fe isotope fractionation between inorganic aqueous Fe(III) and the siderophore complex, Fe(III)-desferrioxamine B

    DEFF Research Database (Denmark)

    Dideriksen, Knud; Baker, Joel A.; Stipp, Susan Louise Svane

    2008-01-01

    In oxic oceans, most of the dissolved iron (Fe) exists as complexes with siderophore-like, strongly coordinating organic ligands. Thus, the isotope composition of the little amount of free inorganic Fe that is available for precipitation and preservation in the geological record may largely...... be controlled by isotope fractionation between the free and complexed iron.We have determined the equilibrium Fe isotope fractionation induced by organic ligand activity in experiments with solutions having co-existing inorganic Fe(III) species and siderophore complexes, Fedesferrioxamine B (at pH 2). The two...... differently complexed Fe(III) pools were separated by addition of Na2CO3, which led to immediate precipitation of the inorganic Fe without causing significant dissociation of Fe-desferrioxamine complexes. Experiments using enriched 57Fe tracer showed that isotopic equilibration between the 57Fe...

  2. Equilibrium Fe isotope fractionation between inorganic aqueous Fe(III) and the siderophore complex, Fe(III)-desferrioxamine B

    DEFF Research Database (Denmark)

    Dideriksen, Knud; Baker, Joel A.; Stipp, Susan Louise Svane

    2008-01-01

    be controlled by isotope fractionation between the free and complexed iron.We have determined the equilibrium Fe isotope fractionation induced by organic ligand activity in experiments with solutions having co-existing inorganic Fe(III) species and siderophore complexes, Fedesferrioxamine B (at pH 2). The two......-type fractionation during precipitation, this experiment yielded an isotope fractionation factor of a56Fesolution-solid=1.00027. Calculations based on these results indicate that isotopic re-equilibration is unlikely to significantly affect our determined equilibrium Fe isotope fractionation between inorganically...... and organically complexed Fe. To determine the equilibrium Fe isotope fractionation between inorganically and organically bound Fe(III), experiments with variable proportions of inorganic Fe were carried out at 25 °C. Irrespective of the proportion of inorganic Fe, equilibrium fractionation factors were within...

  3. Sensitivity of modeled ozone concentrations to uncertainties in biogenic emissions

    International Nuclear Information System (INIS)

    Roselle, S.J.

    1992-06-01

    The study examines the sensitivity of regional ozone (O3) modeling to uncertainties in biogenic emissions estimates. The United States Environmental Protection Agency's (EPA) Regional Oxidant Model (ROM) was used to simulate the photochemistry of the northeastern United States for the period July 2-17, 1988. An operational model evaluation showed that ROM had a tendency to underpredict O3 when observed concentrations were above 70-80 ppb and to overpredict O3 when observed values were below this level. On average, the model underpredicted daily maximum O3 by 14 ppb. Spatial patterns of O3, however, were reproduced favorably by the model. Several simulations were performed to analyze the effects of uncertainties in biogenic emissions on predicted O3 and to study the effectiveness of two strategies of controlling anthropogenic emissions for reducing high O3 concentrations. Biogenic hydrocarbon emissions were adjusted by a factor of 3 to account for the existing range of uncertainty in these emissions. The impact of biogenic emission uncertainties on O3 predictions depended upon the availability of NOx. In some extremely NOx-limited areas, increasing the amount of biogenic emissions decreased O3 concentrations. Two control strategies were compared in the simulations: (1) reduced anthropogenic hydrocarbon emissions, and (2) reduced anthropogenic hydrocarbon and NOx emissions. The simulations showed that hydrocarbon emission controls were more beneficial to the New York City area, but that combined NOx and hydrocarbon controls were more beneficial to other areas of the Northeast. Hydrocarbon controls were more effective as biogenic hydrocarbon emissions were reduced, whereas combined NOx and hydrocarbon controls were more effective as biogenic hydrocarbon emissions were increased

  4. Magnetic Dinner Salads: The Role of Biogenic Magnetite in Cryopreservation for Common Food Plants

    Science.gov (United States)

    Chaffee, T. M.; Kirschvink, J. L.; Kobayashi, A. K.

    2015-12-01

    Biogenically-precipitated magnetite has been found in organisms ranging from Bacteria, single-celled protists, and many of the animal phyla, where its major function is navigation and magnetoreception. To date there is but a single report of biogenic magnetite in plants (essentially, magnetoferritin), and that is in common grass (Festuca species, from Gajdardziska-Josifovska et. al. doi:10.1127/0935-1221/2001/0013/0863). Recent developments in cryopreservation suggest that ~ 1 mT, ~ 10 Hz oscillating magnetic fields can drastically reduce ice nucleation during freezing, promote supercooling, and minimize cellular damage in living tissues (e.g., Kaku et al., doi: 10.1016/j.cryobiol.2012.02.001). Kobayashi & Kirschvink (2014, doi:10.1016/j.cryobiol.2013.12.002) suggest that biogenic magnetite crystals could be the nucleating site for damaging ice crystals, and that they would be driven magneto-mechanically to rotate in those oscillating fields which could inhibit the ice crystal nucleation process. This prompted our investigation into the magnetite content of ordinary fruit and vegetable food products, as knowledge of the natural levels of biogenic magnetite in the human food supply could guide the selection of which foods might work for this type of cryopreservation. Our study involved a range of common foods including avocados, bananas, garlic, and apples. Samples were prepared in a clean lab environment kept free of contaminant particles, and subjected to a variety of standard rock-magnetic tests including IRM and ARM acquisition, and the corresponding Af demagnetization, on a standard 2G™ SRM. Results are consistent with moderately interacting single-domain magnetite (see figure), with moderate inter-particle interaction effects. Typical magnetite concentrations in these samples are in the range of .1 to 1 ng/g for room temperature samples, increasing to the range of 1-10 ng/g when measured frozen (to inhibit thermal rotation of small particles and clumps). If

  5. Fe(III INVOLVEMENT IN THE PHOTODEGRADATION OF ASPIRIN IN HOMOGENEOUS AND HETEROGENEOUS PHASE

    Directory of Open Access Journals (Sweden)

    Y MAMERI

    2014-07-01

    Full Text Available The photocatalytic degradation of Aspirin (ASP induced by Fe(III in homogeneous (ASP-Fe(III-citrate complex and heterogeneous phase (ASP-Goethite was studied in aqueous solution up on irradiation at 365nm and by solar light.  A dark investigation of system containing a mixture of aspirin and Fe (III reveals no interaction in homogeneous phase but in heterogeneous phase, the interaction observed was traduced by aspirin adsorption on Goethite in aqueous solution. Under irradiation, Fe(III-Citrate complex enhance the photooxidation of ASP; a pseudo-first order kinetic model was employed to discuss the results. Against in heterogeneous phase, kinetics is slower and the process is accelerated at acidic pH. The involvement of HO● radicals has been established because of the influence of tertiobutanol used as a scavenger. The photodegradation of ASP in the mixture ASP-Fe(III-Cit and ASP-Goethite under solar light was significantly accelerated in comparison with artificial irradiation at 365nm.

  6. Biogenic amines in Italian Pecorino cheese

    Directory of Open Access Journals (Sweden)

    Maria eSchirone

    2012-05-01

    Full Text Available The quality of distinctive artisanal cheeses is closely associated with the territory of production and its traditions. Pedoclimatic characteristics, genetic autochthonous variations and anthropic components create an environment so specific that it would be extremely difficult to reproduce elsewhere. Pecorino cheese is included in this sector of the market and is widely diffused in Italy (approximately 53.727t of production. Pecorino is a common name given to indicate Italian cheeses made exclusively from pure ewes' milk characterized by a high content of fat matter and it is mainly produced in the middle and south of Italy by traditional procedures from raw or thermized milk. The microbiota plays a major role in the development of the organoleptic characteristics of the cheese but it can also be responsible for the accumulation of undesirable substances, such as biogenic amines (BA. Several factors can contribute to the qualitative and quantitative profiles of BA’s in Pecorino cheese such as environmental hygienic conditions, pH, salt concentration, aw, fat content, pasteurization of milk, decarboxylase microorganisms, starter cultures, temperature and time of ripening, storage, part of the cheese (core, edge and the presence of cofactor. Generally, the total content of BA’s can range from about 100-2400 mg/kg, with a prevalence of toxicologically important BA’s, tyramine and histamine. The presence of BA in Pecorino cheeses is becoming increasingly important to consumers and cheese-maker alike, due to the potential threats of toxicity to humans and consequent trade implications.

  7. Seasonal trends of biogenic terpene emissions.

    Science.gov (United States)

    Helmig, Detlev; Daly, Ryan Woodfin; Milford, Jana; Guenther, Alex

    2013-09-01

    Biogenic volatile organic compound (BVOC) emissions from six coniferous tree species, i.e. Pinus ponderosa (Ponderosa Pine), Picea pungens (Blue Spruce), Pseudotsuga menziesii (Rocky Mountain Douglas Fir) and Pinus longaeva (Bristlecone Pine), as well as from two deciduous species, Quercus gambelii (Gamble Oak) and Betula occidentalis (Western River Birch) were studied over a full annual growing cycle. Monoterpene (MT) and sesquiterpene (SQT) emissions rates were quantified in a total of 1236 individual branch enclosure samples. MT dominated coniferous emissions, producing greater than 95% of BVOC emissions. MT and SQT demonstrated short-term emission dependence with temperature. Two oxygenated MT, 1,8-cineol and piperitone, were both light and temperature dependent. Basal emission rates (BER, normalized to 1000μmolm(-2)s(-1) and 30°C) were generally higher in spring and summer than in winter; MT seasonal BER from the coniferous trees maximized between 1.5 and 6.0μgg(-1)h(-1), while seasonal lows were near 0.1μgg(-1)h(-1). The fractional contribution of individual MT to total emissions was found to fluctuate with season. SQT BER measured from the coniferous trees ranged from emissions modeling, was not found to exhibit discernible growth season trends. A seasonal correction factor proposed by others in previous work to account for a sinusoidal shaped emission pattern was applied to the data. Varying levels of agreement were found between the data and model results for the different plant species seasonal data sets using this correction. Consequently, the analyses on this extensive data set suggest that it is not feasible to apply a universal seasonal correction factor across different vegetation species. A modeling exercise comparing two case scenarios, (1) without and (2) with consideration of the seasonal changes in emission factors illustrated large deviations when emission factors are applied for other seasons than those in which they were experimentally

  8. A simple small size and low cost sensor based on surface plasmon resonance for selective detection of Fe(III).

    Science.gov (United States)

    Cennamo, Nunzio; Alberti, Giancarla; Pesavento, Maria; D'Agostino, Girolamo; Quattrini, Federico; Biesuz, Raffaela; Zeni, Luigi

    2014-03-07

    A simple, small size, and low cost sensor based on a Deferoxamine Self Assembled Monolayer (DFO-SAM) and Surface Plasmon Resonance (SPR) transduction, in connection with a Plastic Optical Fiber (POF), has been developed for the selective detection of Fe(III). DFO-SAM sensors based on appropriate electrochemical techniques can be frequently found in the scientific literature. In this work, we present the first example of a DFO-SAM sensor based on SPR in an optical fiber. The SPR sensing platform was realized by removing the cladding of a plastic optical fiber along half the circumference, spin coating a buffer of Microposit S1813 photoresist on the exposed core, and finally sputtering a thin gold film. The hydroxamate siderophore deferoxamine (DFO), having high binding affinity for Fe(III), is then used in its immobilized form, as self-assembled monolayer on the gold layer surface of the POF sensor. The results showed that the DFO-SAM-POF-sensor was able to sense the formation of the Fe(III)/DFO complex in the range of concentrations between 1 μm and 50 μm with a linearity range from 0 to 30 μm of Fe(III). The selectivity of the sensor was also proved by interference tests.

  9. Effect of metal ion Fe(III on the performance of chlorophyll as photosensitizers on dye sensitized solar cell

    Directory of Open Access Journals (Sweden)

    Harsasi Setyawati

    Full Text Available The energy crisis is a major problem facing the world today and will need a renewable energy source that is environmentally friendly; one of these is the dye sensitized solar cell (DSSC. DSSC is photochemical electric cell that can convert solar energy into electrical energy. This research aims to study the characteristics of chlorophyll compounds with the addition of metal ions Fe(III and to determine the effect of Fe(III on the performance of chlorophyll as a photosensitizer in the DSSC. The formation of complex compounds of Fe(III-chlorophyll is shown by the phenomenon of metal ligand charge transfer (MLCT at a wavelength of 263.00 nm and absorption transition d-d at 745.00 nm. Fourier transform infrared characterization of the binding of Fe-O complex compounds appears at 486.06 cm−1. The complex compound of Fe(III-chlorophyll has a magnetic moment value of 9.62 Bohr Magneton (BM. The existence of ion Fe(III in chlorophyll can improve the performance of chlorophyll as a dye sensitizer with a maximum current of 4.00 mA/cm2, maximum voltage of 0.18 volts and efficiency values of 1.35%. Keywords: Fe(III-chlorophyll, Dye sensitized solar cell, Metal ligand charge transfer, Photosensitizer

  10. Effect of nitrate enrichment and diatoms on the bioavailability of Fe(III) oxyhydroxide colloids in seawater.

    Science.gov (United States)

    Liu, Feng-Jiao; Huang, Bang-Qin; Li, Shun-Xing; Zheng, Feng-Ying; Huang, Xu-Guang

    2016-03-01

    The photoconversion of colloidal iron oxyhydroxides was a significant source of bioavailable iron in coastal systems. Diatoms dominate phytoplankton communities in coastal and upwelling regions. Diatoms are often exposed to eutrophication. We investigated the effects of different species of diatom, cell density, illumination period, and nitrate additions on the bioavailability of Fe(III) oxy-hydroxide colloids in seawaters. With the increase of illumination period from 1 to 4 h, the ratios of concentrations of total dissolved Fe (DFe) to colloidal iron oxyhydroxides and Fe(II) to DFe increased up to 24.3% and 23.9% for seawater without coastal diatoms, 45.6% and 30.2% for Skeletonema costatum, 44.3% and 29.7% for Thalassiosira weissflogii, respectively. The photochemical activity of coastal diatoms themselves (excluding the dissolved organic matter secreted by algae) on the species transformation of iron in seawater (including the light-induced dissolution of Fe(III) oxyhydroxide colloids and the photo-reduction of Fe(III) into Fe(II)) was confirmed for the first time. There was no significant difference of the ability of S. costatum and Thalassiosira weissflogii on the photoconversion of colloidal iron oxyhydroxides. The photoproduction of dissolved Fe(II) and DFe in the seawater with or without diatoms could be depressed by the nitrate addition. Copyright © 2015 Elsevier Ltd. All rights reserved.

  11. Aggregate and Mineral Resources - Minerals

    Data.gov (United States)

    NSGIC State | GIS Inventory — This point occurrence data set represents the current mineral and selected energy resources of Utah. The data set coordinates were derived from USGS topographic maps...

  12. Monitoring the formation of clastic-biogenic varves to improve the quality of paleoclimate reconstructions

    Science.gov (United States)

    Ojala, A.; Kosonen, E.; Weckstrom, J.; Korkonen, S.

    2013-12-01

    Annually laminated (varved) sediments are excellent archives for studies of past climate and environmental changes, as they allow analysis of the undisturbed 'in-situ' sediment composition and structure with a seasonal-scale resolution. Among those, clastic-biogenic varved lake sediments have been found and investigated in Finland and Sweden during the last decades. An important prerequisite for applying varved sediments in palaeoenvironmental studies is understanding the mechanism of rhythmic sedimentation and the composition of different laminae representing annual sedimentation events. This knowledge is essential for verifying the annual nature of varves, for investigating the main factors controlling seasonal sedimentation, and for the interpretations of past environmental changes. Here, we report detailed information on the seasonal sedimentation of different varve components and palaeolimnological indicators (diatoms, chrysophycaean cysts) in Lake Nautajärvi, Finland, using near-bottom sediment trap monitoring. The monitoring results strongly support previous interpretations of the formation of clastic-biogenic varves in Fennoscandian lakes. The results also indicate that seasonal sediment fluxes correspond with regional climate and environmental changes. They clearly reveal differences in the amount of seasonal sediment flux between two climatologically and hydrologically different years. For example, higher snow storage in winter and the discharge intensity during the following spring snow melt clearly increases the suspended sediment load, transportation, and net accumulation of detrital mineral matter during spring and early summer. A prolonged autumn and subsequent freezing and thawing cycles in winter, conversely, results in an incremental but slow accumulation of assorted mineral matter and organic particles during winter, whereas the subsequent spring flooding and detrital sediment yield are diminished and thinner clastic laminae are formed. The

  13. Influence of biogenic gas production on coalbed methane recovery index

    Directory of Open Access Journals (Sweden)

    Hongyu Guo

    2017-05-01

    Full Text Available In investigating the effect of biogenic gas production on the recovery of coalbed methane (CBM, coal samples spanning different ranks were applied in the microbial-functioned simulation experiments for biogenic methane production. Based on the biogenic methane yield, testing of pore structures, and the isothermal adsorption data of coals used before and after the simulation experiments, several key parameters related to the recovery of CBM, including recovery rate, gas saturation and ratio of critical desorption pressure to reservoir pressure, etc., were calculated and the corresponding variations were further analyzed. The results show that one of the significant functions of microbial communities on coal is possibly to weaken its affinity for methane gas, especially with the advance of coal ranks; and that by enhancing the pore system of coal, which can be evidenced by the increase of porosity and permeability, the samples collected from Qianqiu (Yima in Henan and Shaqu (Liulin in Shanxi coal mines all see a notable increase in the critical desorption pressure, gas saturation and recovery rate, as compared to the moderate changes of that of Guandi (Xishan in Shanxi coal sample. It is concluded that the significance of enhanced biogenic gas is not only in the increase of CBM resources and the improvement of CBM recoverability, but in serving as an engineering reference for domestic coalbed biogenic gas production.

  14. Accounting for urban biogenic fluxes in regional carbon budgets.

    Science.gov (United States)

    Hardiman, Brady S; Wang, Jonathan A; Hutyra, Lucy R; Gately, Conor K; Getson, Jackie M; Friedl, Mark A

    2017-08-15

    Many ecosystem models incorrectly treat urban areas as devoid of vegetation and biogenic carbon (C) fluxes. We sought to improve estimates of urban biomass and biogenic C fluxes using existing, nationally available data products. We characterized biogenic influence on urban C cycling throughout Massachusetts, USA using an ecosystem model that integrates improved representation of urban vegetation, growing conditions associated with urban heat island (UHI), and altered urban phenology. Boston's biomass density is 1/4 that of rural forests, however 87% of Massachusetts' urban landscape is vegetated. Model results suggest that, kilogram-for-kilogram, urban vegetation cycles C twice as fast as rural forests. Urban vegetation releases (R E ) and absorbs (GEE) the equivalent of 11 and 14%, respectively, of anthropogenic emissions in the most urban portions of the state. While urban vegetation in Massachusetts fully sequesters anthropogenic emissions from smaller cities in the region, Boston's UHI reduces annual C storage by >20% such that vegetation offsets only 2% of anthropogenic emissions. Asynchrony between temporal patterns of biogenic and anthropogenic C fluxes further constrains the emissions mitigation potential of urban vegetation. However, neglecting to account for biogenic C fluxes in cities can impair efforts to accurately monitor, report, verify, and reduce anthropogenic emissions. Copyright © 2017 Elsevier B.V. All rights reserved.

  15. Acidic Microenvironments in Waste Rock Characterized by Neutral Drainage: Bacteria–Mineral Interactions at Sulfide Surfaces

    Directory of Open Access Journals (Sweden)

    John W. Dockrey

    2014-03-01

    Full Text Available Microbial populations and microbe-mineral interactions were examined in waste rock characterized by neutral rock drainage (NRD. Samples of three primary sulfide-bearing waste rock types (i.e., marble-hornfels, intrusive, exoskarn were collected from field-scale experiments at the Antamina Cu–Zn–Mo mine, Peru. Microbial communities within all samples were dominated by neutrophilic thiosulfate oxidizing bacteria. However, acidophilic iron and sulfur oxidizers were present within intrusive waste rock characterized by bulk circumneutral pH drainage. The extensive development of microbially colonized porous Fe(III (oxyhydroxide and Fe(III (oxyhydroxysulfate precipitates was observed at sulfide-mineral surfaces during examination by field emission-scanning electron microscopy-energy dispersive X-ray spectroscopy (FE-SEM-EDS. Linear combination fitting of bulk extended X-ray absorption fine structure (EXAFS spectra for these precipitates indicated they were composed of schwertmannite [Fe8O8(OH6–4.5(SO41–1.75], lepidocrocite [γ-FeO(OH] and K-jarosite [KFe3(OH6(SO42]. The presence of schwertmannite and K-jarosite is indicative of the development of localized acidic microenvironments at sulfide-mineral surfaces. Extensive bacterial colonization of this porous layer and pitting of underlying sulfide-mineral surfaces suggests that acidic microenvironments can play an important role in sulfide-mineral oxidation under bulk circumneutral pH conditions. These findings have important implications for water quality management in NRD settings.

  16. Technologies for the utilisation of biogenic waste in the bioeconomy.

    Science.gov (United States)

    O'Callaghan, Kenneth

    2016-05-01

    A brief review has been done of technologies involved in the exploitation of biogenic wastes, in order to provide an introduction to the subject from the technological perspective. Biogenic waste materials and biomass have historically been utilised for thousands of years, but a new conversation is emerging on the role of these materials in modern bioeconomies. Due to the nature of the products and commodities now required, a modern bioeconomy is not simply a rerun of former ones. This new dialogue needs to help us understand how technologies for managing and processing biogenic wastes--both established and novel--should be deployed and integrated (or not) to meet the requirements of the sustainability, closed-loop and resource-security agendas that evidently sit behind the bioeconomy aspirations now being voiced in many countries and regions of the world. Copyright © 2015 Elsevier Ltd. All rights reserved.

  17. The occurrence and significance of biogenic opal in the regolith

    Science.gov (United States)

    Clarke, Jonathan

    2003-02-01

    Biogenic opal produced by vascular plants, diatoms, and siliceous sponges have been found in soils and terrestrial sediments of all continents except Antarctica since the middle of the 19th century. The opal particles range in size from fine silt to fine sand. Almost all soils contain detectable opal up to levels of 2-3%, and a significant number contain values in excess of 5%. Even higher values have been found from soils and sediments of all continents in a wide range of soil types. The most important factor is poor soil drainage and seasonal to permanent water logging. This encourages the proliferation of silica producing organisms. Such conditions have been found in the soils and aquatic sediments of the monsoonal tropics, tropical rain forests, temperate forests, tropical savanna, tropical islands, semi-arid grasslands and savanna, and temperate woodland and grassland. The presence of a volcanic substrate also appears favourable in some cases, but is not necessary. Biogenic opal preferentially collects in the A horizon of soils and, to a lesser extent, in the B horizon. This preferential distribution facilitates identification of palaeosols in stacked soil sequences. Biogenic opal is also a component of windblown dust, even in arid environments. Biogenic opal is significant to regolith processes in a number of ways. Firstly, as in the case in marine environments, it is likely to be important in silica cycling and storage because of its greater lability compared to quartz. Secondly, dissolution and reprecipitation of opal A as opal CT or micro-quartz may play a role in cementation and silicification of regolith to form silica hardpans and silcrete. Thirdly, the organisms that form biogenic opal can have considerable palaeoenvironmental significance and be valuable in reconstructing regolith evolution. Finally, some forms of biogenic silica, in particular sponge spicules, can present a health hazard. Their high abundance in some soils and sediments needs to be

  18. Molecular and biochemical characterization of the Fe(III) chelate reductase gene family in Arabidopsis thaliana.

    Science.gov (United States)

    Wu, Huilan; Li, Lihua; Du, Juan; Yuan, Youxi; Cheng, Xudong; Ling, Hong-Qing

    2005-09-01

    Iron chelate reductase is required for iron acquisition from soil and for metabolism in plants. In the genome of Arabidopsis thaliana there are eight genes classified into the iron chelate reductase gene family (AtFROs) based on sequence homology with AtFRO2 (a ferric chelate reductase in Arabidopsis). They are localized on chromosome 1 (three AtFROs) and chromosome 5 (five AtFROs) of Arabidopsis and show a high level of amino acid sequence similarity to each other. An assay for ferric chelate reductase activity revealed that AtFRO2, AtFRO3, AtFRO4, AtFRO5, AtFRO7 and AtFRO8 conferred significantly increased iron reduction activity compared with the control when expressed in yeast cells, indicating that the six AtFROs encode iron chelate reductases functioning in iron homeostasis in Arabidopsis. AtFRO2 displayed the highest iron reduction activity among the AtFROs investigated, further demonstrating that AtFRO2 is a major iron reductase gene in Arabidopsis. AtFRO2 and AtFRO3 were mainly expressed in roots of Arabidopsis, AtFRO5 and AtFRO6 in shoots and flowers, and AtFRO7 in cotyledons and trichomes, whereas the transcription of AtFRO8 was specific for leaf veins. Considering the tissue-specific expression profiles of AtFRO genes, we suggest that AtFRO2 and AtFRO3 are two Fe(III) chelate reductases mainly functioning in iron acquisition and metabolism in Arabidopsis roots, while AtFRO5, AtFRO6, AtFRO7 and AtFRO8 are required for iron homeostasis in different tissues of shoots.

  19. Biogenic amines in smear and mould-ripened cheeses

    Directory of Open Access Journals (Sweden)

    Pavel Pleva

    2014-02-01

    Full Text Available The aim of the study was the monitoring of six biogenic amines (histamine, tyramine, phenylethylamine, tryptamine, putrescine, and cadaverine and two polyamines (spermidine and spermine in 30 samples of dairy products purchased in the Czech Republic, namely in 15 samples of mould-ripened cheeses and in 15 samples of smear-ripened cheeses. A further goal was the microbiological analysis of the individual samples of cheeses (total count of microorganisms, number of enterobacteria, enterococci, lactic acid bacteria, yeasts and moulds. The monitored biogenic amines were analyzed by a high performance liquid chromatography equipped with a UV/VIS DAD detector. The amount of enterobacteria in fresh cheese exceeded 105 CFU.g‑1. In smear-ripened cheese flavourless (Romadur type, the amount was >103 CFU.g-1 and 104-105 CFU.g-1 in smear-ripened cheese with flavour. Biogenic amines were observed in two groups of blue cheeses (white veined cheese and blue veined cheese and smear-ripened cheeses. In both groups, there is a possibility of the presence of biogenic amines because the number of microorganisms and concentration of free amino acids increase during ripening. In ten samples of soft smear-ripening acid cheese and in smear-ripened cheese, the total content of biogenic amines were 22-1000 mg.kg-1 and in 5 samples of these cheeses, it was in range 1000-6000 mg.kg-1. The total amount of biogenic amines in the blue cheeses were in range 40-600 mg.kg-1. The presense of the tyramine was observed in the all analysed cheeses. The tyramine producing strains generated more than 900 mg.kg-1 of this biogenic amine. The production of tryptamine in the analysed cheeses was not proved by this study. The results of this study show that biogenic amines and polyamines are common in cheese. However, in some cases, they can pose a significant health danger for consumers. Any legislative control authority does not monitor them, as they are secondary metabolites even

  20. Biogen to produce diagnostic tests, vaccines and ethanol

    Energy Technology Data Exchange (ETDEWEB)

    1982-01-11

    In addition to its work on pharmaceuticals and veterinary products, Europe's largest biotechnology company, Biogen, is reported to be working on the production of ethanol from biomass. The process, based on two strains of clostridia bacteria, can convert both the cellulose and hemicellulose of agricultural wastes to ethanol. Biogen is also studying the production of basic chemicals, such as acetic acid, acetone and butane from cellulosic biomass and is looking at various types of organisms to effect low cost chemical conversions.

  1. Determination of Biogenic Amines in Different Shrimp Species for Export

    International Nuclear Information System (INIS)

    Myat Myat Thaw; Oo Aung; Aung Myint; Bisswanger, Hans

    2004-06-01

    This study is part of the project on the ''Quality Assurance of Different Shrimp Species for Export''. Local shrimp samples were collected from Ministry of Livestock and Fisheries and various private enterprises. Contents of biogenic amines were determined by using benzoyl chloride derivatization method with HPLC (reverse phase high performance liquid chromatography). Based on the biogenic amines, quality index of shrimps were correlated with freshness index so that the grade of shrimp samples can be classified as excellent, good, and acceptable. All sizes of shrimps such as extra large, large, medium were found to excceptable respectively

  2. Fermented functional foods based on probiotics and their biogenic metabolites.

    Science.gov (United States)

    Stanton, Catherine; Ross, R Paul; Fitzgerald, Gerald F; Van Sinderen, Douwe

    2005-04-01

    The claimed health benefits of fermented functional foods are expressed either directly through the interaction of ingested live microorganisms, bacteria or yeast with the host (probiotic effect) or indirectly as a result of ingestion of microbial metabolites produced during the fermentation process (biogenic effect). Although still far from fully understood, several probiotic mechanisms of action have been proposed, including competitive exclusion, competition for nutrients and/or stimulation of an immune response. The biogenic properties of fermented functional foods result from the microbial production of bioactive metabolites such as certain vitamins, bioactive peptides, organic acids or fatty acids during fermentation.

  3. Biomass burning - Combustion emissions, satellite imagery, and biogenic emissions

    Science.gov (United States)

    Levine, Joel S.; Cofer, Wesley R., III; Winstead, Edward L.; Rhinehart, Robert P.; Cahoon, Donald R., Jr.; Sebacher, Daniel I.; Sebacher, Shirley; Stocks, Brian J.

    1991-01-01

    After detailing a technique for the estimation of the instantaneous emission of trace gases produced by biomass burning, using satellite imagery, attention is given to the recent discovery that burning results in significant enhancement of biogenic emissions of N2O, NO, and CH4. Biomass burning accordingly has an immediate and long-term impact on the production of atmospheric trace gases. It is presently demonstrated that satellite imagery of fires may be used to estimate combustion emissions, and could be used to estimate long-term postburn biogenic emission of trace gases to the atmosphere.

  4. Fumarolic minerals

    DEFF Research Database (Denmark)

    Balic Zunic, Tonci; Garavelli, Anna; Jakobsson, Sveinn Peter

    2016-01-01

    The fumarolic mineralogy of the Icelandic active volcanoes, the Tyrrhenian volcanic belt (Italy) and the Aegean active arc (Greece) is investigated, and literature data surveyed in order to define the characteristics of the European fumarolic systems. They show broad diversity of mineral associat......The fumarolic mineralogy of the Icelandic active volcanoes, the Tyrrhenian volcanic belt (Italy) and the Aegean active arc (Greece) is investigated, and literature data surveyed in order to define the characteristics of the European fumarolic systems. They show broad diversity of mineral...... associations, with Vesuvius and Vulcano being also among the world localities richest in mineral species. Volcanic systems, which show recession over a longer period, show fumarolic development from the hightemperature alkaline halide/sulphate, calcic sulphate or sulphidic parageneses, synchronous...... with or immediately following the eruptions, through mediumtemperature ammonium minerals, metal chlorides, or fluoride associations to the late low-temperature paragenesis dominated by sulphur, gypsum, alunogen, and other hydrous sulphates. The situation can be different in the systems that are not recessing but show...

  5. Evolution of Mineral-Organic Matter Associations in Sediments: From (Bio)mineralization to Burial

    Science.gov (United States)

    Estes, E.; Nordlund, D.; Wankel, S. D.; Hansel, C. M.

    2014-12-01

    Physical and chemical associations with mineral surfaces may protect organic matter (OM) from oxidative degradation and allow its preservation in soils and sediments. This study evaluates the mechanism of mineral-based preservation (MBP) and the time scale on which MBP is operative by tracking the co-evolution of oxide minerals and associated OM during mineral precipitation and ripening. Scanning transmission X-ray microscopy coupled to near edge X-ray absorption fine structure spectroscopy (STXM-NEXAFS) as well as bulk NEXAFS demonstrate that, in laboratory systems using cell-free filtrate from pure bacterial cultures, an association between OM and biogenic manganese oxides is rapidly established. OM associated with freshly precipitated biominerals consists of proteinaceous carbon and nitrogen consistent with a microbial origin; this composition remains constant over the course of 96 hours, despite mineral aggregation and structural evolution from hexagonal to triclinic birnessite. We predict that, in natural systems, oxide minerals simultaneously drive remineralization and offer MBP. Different minerals will promote a different balance between the two, imparting a mineral-specific signature on the concentration and composition of preserved OM. We test this idea by conducting incubations of natural estuary waters spiked with compositionally and structurally diverse synthetic oxide minerals. The concentration and composition of mineral-associated OM were tracked by element analyzer-isotope ratio mass spectrometry (EA-IRMS) and STXM-NEXAFS in multiple experiments lasting between 4 weeks and 1 year. Results from incubation experiments are contrasted with natural sediment samples from a range of depositional environments in order to evaluate the potential for long-term sequestration of organic carbon in sediments facilitated by minerals.

  6. Molecular biomineralization: toward an understanding of the biogenic origin of polymetallic nodules, seamount crusts, and hydrothermal vents.

    Science.gov (United States)

    Wang, Xiaohong; Wiens, Matthias; Schröder, Heinz C; Schloßmacher, Ute; Müller, Werner E G

    2011-01-01

    Polymetallic nodules and crusts, hydrothermal vents from the Deep Sea are economically interesting, since they contain alloying components, e.g., manganese or cobalt, that are used in the production of special steels; in addition, they contain rare metals applied for plasma screens, for magnets in hard disks, or in hybrid car motors. While hydrothermal vents can regenerate in weeks, polymetallic nodules and seamount crusts grow slowly. Even though the geochemical basis for the growth of the nodules and crusts has been well studied, the contribution of microorganisms to the formation of these minerals remained obscure. Recent HR-SEM (high-resolution scanning electron microscopy) analyses of nodules and crusts support their biogenic origin. Within the nodules, bacteria with surface S-layers are arranged on biofilm-like structures, around which Mn deposition starts. In crusts, coccoliths represent the dominant biologically formed structures that act as bio-seeds for an initial Mn deposition. In contrast, hydrothermal vents have apparently an abiogenic origin; however, their minerals are biogenically transformed by bacteria. In turn, strategies can now be developed for biotechnological enrichment as well as selective dissolution of metals from such concretions. We are convinced that the recent discoveries will considerably contribute to our understanding of the participation of organic matrices in the enrichment of those metals and will provide the basis for feasibility studies for biotechnological applications.

  7. 76 FR 80368 - Notification of Teleconferences of the Science Advisory Board Biogenic Carbon Emissions Panel

    Science.gov (United States)

    2011-12-23

    ... Advisory Board Biogenic Carbon Emissions Panel AGENCY: Environmental Protection Agency (EPA). ACTION... Office announces two teleconferences of the SAB Biogenic Carbon Emissions Panel to review EPA's draft Accounting Framework for Biogenic CO2 Emissions from Stationary Sources (September 2011). DATES: The...

  8. Biogenic gases in tropical floodplain river

    Directory of Open Access Journals (Sweden)

    Maria Victória Ramos Ballester

    2001-06-01

    Full Text Available Analysis of the distribution of biogenic gases in the floodplain of the Mogi-Guaçu River (São Paulo, Brazil enabled the establishment of a "redox hierarchy", in which the main channel was the most oxidizing environment, followed by Diogo Lake, with Infernão Lake having the most reducing conditions of the subsystems evaluated. Diogo Lake exported about 853.4 g C.m-2.year-1, of which, 14.6% was generated from methanogenesis and 36.7% by aerobic respiration. For Infernão Lake, these values were 2016 g C.m-2.year-1, 1.8 % and 41.5 %, respectively. Carbon export by these systems was predominantly in the form of CO2, which was responsible for the release of 728.78 g C.m-2.year-1 at Diogo Lake and 1979.72 g C.m-2. year-1 at Infernão Lake. Such patterns may result from the nature of the hydrological conditions, the action of the hydroperiod, and morphological characteristics of the environment.A análise da distribuição de gases biogênicos na planície de inundação do Rio Mogi Guaçu (São Paulo, Brasil possibilitou o estabelecimento de um gradiente redox para os sistemas aquáticos avaliados, em que o canal principal do rio apresentou-se como o ambiente mais oxidado, seguido da Lagoa do Diogo, e a Lagoa do Infernão apresentando as condições mais redutoras entre os ambientes em questão. A Lagoa do Diogo exporta um total de 853,4 g C.m-2.ano-1, do qual 14,6% é produzido pela metanogênese e 36,7% pela respiração aeróbia. Para a Lagoa do Infernão estes valores foram respectivamente de 2.016 g C.m-2.ano-1, 1,8% e de 41,5%. A exportação de carbono por estes sistemas é realizada, predominantemente na forma de CO2, nos valores de 728,78 g C.m-2.ano-1 para a Lagoa do Diogo e 1.979,72 g C.m-2.ano-1 para a Lagoa do Infernão. Estes padrões parecem estar relacionados com a natureza das condições hidrológicas, com a ação do hidroperíodo e com as características morfológicas do ambiente.

  9. Stability of liquid fuels with biogenic content

    Energy Technology Data Exchange (ETDEWEB)

    Koch, Winfried; Hoffmann, Hajo; Pohland vom Schloss, Heide [OWI - Oel-Waerme-Institut GmbH, Herzogenrath (Germany)

    2013-06-01

    Mineral-based fuels for diesel- and spark-ignition engines are always mixtures of many components with a wide distillation range. These insure, for example, a low viscosity and good cold starting properties. Therefore, the fuel system components are designed for mineral-based diesel and gasoline fuels. Biofuels like biodiesel and bioethanol, which only partially show these physical properties, are introduced into the fuel market because of political and ecological aspects. Currently common biofuels, such as ethanol and biodiesel, are investigated in uncommon high blend levels of 10 vol.-% and 30 vol.-% as well as future biofuels. Biodiesel (fatty acid methyl ester, FAME) has poor cold-flow properties concerning to the CP and CFPP. Therefore, biodiesel has the tendency to form crystalline deposits at sub-zero temperatures. For bioethanol applications, an adjustment of the materials used, for example for sealing, is necessary. It is well known that the negative implications of biofuels require an additive treatment for an optimal performance. In contrast to previous examinations, in which technical components were analyzed by their own, in the presented investigations (''GObio''-project), the complete system of sensitive fuel tank and feed system with auxiliary units like independent vehicle heaters is used to determine the influences of the biofuels. The investigations are based on hardware in the loop testing. A target of the project was to modify the application technology like the independent vehicle heater and the in-tank pumps to use the biofuels in the conventional systems. Furthermore, it was an objective to upgrade the performance of the fuels through the development and the treatment with additives. During operation with low blend levels no problems were detected so that safe operation using diesel with up to 7 vol.-% FAME according to EN 590 is ensured. At the temperature levels present in the fuel leading parts during operation

  10. Use of biogenic sulfide for ZnS precipitation

    NARCIS (Netherlands)

    Esposito, G.; Veeken, A.; Weijma, J.; Lens, P.N.L.

    2006-01-01

    A 600 ml continuously stirred tank reactor was used to assess the performance of a zinc sulfide precipitation process using a biogenic sulfide solution (the effluent of a sulfate-reducing bioreactor) as sulfide source. In all experiments, a proportional-integral (PI) control algorithm was used to

  11. Azo dye decolorization assisted by chemical and biogenic sulfide

    Energy Technology Data Exchange (ETDEWEB)

    Prato-Garcia, Dorian [Laboratory for Research on Advanced Processes for Water Treatment, Unidad Académica Juriquilla, Instituto de Ingeniería, Universidad Nacional Autónoma de México, Blvd. Juriquilla 3001, Querétaro 76230 (Mexico); Cervantes, Francisco J. [División de Ciencias Ambientales, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa de San José 2055, San Luis Potosí 78216 (Mexico); Buitrón, Germán, E-mail: gbuitronm@ii.unam.mx [Laboratory for Research on Advanced Processes for Water Treatment, Unidad Académica Juriquilla, Instituto de Ingeniería, Universidad Nacional Autónoma de México, Blvd. Juriquilla 3001, Querétaro 76230 (Mexico)

    2013-04-15

    Highlights: ► Azo dyes were reduced efficiently by chemical and biogenic sulfide. ► Biogenic sulfide was more efficient than chemical sulfide. ► There was no competition between dyes and sulfate for reducing equivalents. ► Aromatic amines barely affected the sulfate-reducing process. -- Abstract: The effectiveness of chemical and biogenic sulfide in decolorizing three sulfonated azo dyes and the robustness of a sulfate-reducing process for simultaneous decolorization and sulfate removal were evaluated. The results demonstrated that decolorization of azo dyes assisted by chemical sulfide and anthraquinone-2,6-disulfonate (AQDS) was effective. In the absence of AQDS, biogenic sulfide was more efficient than chemical sulfide for decolorizing the azo dyes. The performance of sulfate-reducing bacteria in attached-growth sequencing batch reactors suggested the absence of competition between the studied azo dyes and the sulfate-reducing process for the reducing equivalents. Additionally, the presence of chemical reduction by-products had an almost negligible effect on the sulfate removal rate, which was nearly constant (94%) after azo dye injection.

  12. Biogenic ZnO nanoparticles synthesized using L. aculeata leaf

    Indian Academy of Sciences (India)

    ... Refresher Courses · Symposia · Live Streaming. Home; Journals; Bulletin of Materials Science; Volume 39; Issue 1. Biogenic ZnO nanoparticles synthesized using L. aculeata leaf extract and their antifungal activity against plant fungal pathogens. S Narendhran Rajeshwari Sivaraj. Volume 39 Issue 1 February 2016 pp 1- ...

  13. Conditions allowing the formation of biogenic amines in cheese

    NARCIS (Netherlands)

    Joosten, H.M.L.J.

    1988-01-01

    A study was undertaken to reveal the conditions that allow the formation of biogenic amines in cheese.

    The starters most commonly used in the Dutch cheese industry do not have decarboxylative properties. Only if the milk or curd is contaminated with non-starter bacteria, amine

  14. incidence of biogenic amines in foods implications for the gambia

    African Journals Online (AJOL)

    Temechegn

    Health-wise biogenic amines play positive roles and ... BAs include, fish, fish products, meat products, eggs, cheeses, fermented vegetables, soybean ... The amount of. BAs present in foods, fruits and vegetables provides an index for measuring food quality [3]. In the tropics fish are caught in temperatures more than 200C.

  15. Biogenic volatile compounds of activated sludge and their ...

    African Journals Online (AJOL)

    Heavy metals pollution is nowadays one of the most important environmental concerns. This paper illustrates the employment of the biogenic volatile compounds generated during the aerobic growth of activated sludge on raw domestic wastewater for heavy metals removal. Most of the tested metals even as individual or ...

  16. Biogenic volatile organic compound (VOC) emissions from forests in Finland

    International Nuclear Information System (INIS)

    Lindfors, V.; Laurila, T.

    2000-01-01

    We present model estimates of biogenic volatile organic compound (VOC) emissions from the forests in Finland. The emissions were calculated for the years 1995-1997 using the measured isoprene and monoterpene emission factors of boreal tree species together with detailed satellite land cover information and meteorological data. The three-year average emission is 319 kilotonnes per annum, which is significantly higher than the estimated annual anthropogenic VOC emissions of 193 kilotonnes. The biogenic emissions of the Finnish forests are dominated by monoterpenes, which contribute approximately 45% of the annual total. The main isoprene emitter is the Norway spruce (Picea abies) due to its high foliar biomass density. Compared to the monoterpenes, however, the total isoprene emissions are very low, contributing only about 7% of the annual forest VOC emissions. The isoprene emissions are more sensitive to the meteorological conditions than the monoterpene emissions, but the progress of the thermal growing season is clearly reflected in all biogenic emission fluxes. The biogenic emission densities in northern Finland are approximately half of the emissions in the southern parts of the country. (orig.)

  17. The secondary biogenic radiation of gamma-irradiated human blood

    International Nuclear Information System (INIS)

    Kuzin, A.M.; Surkenova, G.N.; Budagovskij, A.V.; Gudi, G.A.

    1997-01-01

    The sample of blood freshly taken from healthy men were gamma-irradiated with a dose of 10 Gy. It was shown that after the treatment the blood gained the capacity to emit secondary biogenic radiation. Emission lasted for some hours, passed through quartz-glass curette and was revealed by stimulating influence on biological detector (sprouting seeds)

  18. Hydrothermal minerals

    Digital Repository Service at National Institute of Oceanography (India)

    Nath, B.N.

    and in sedimented rifts adjacent to continental margins. The hydrothermal deposits mainly occur in the tectonically active regions, where plates shift and spread creating fissures in the seafloor. Mineralization at the spreading ridges is the result of sea-floor... processes. Submarine hydrothermal circulation in the oceanic crust and its activity on the ocean floor are fundamental processes controlling the transfer of energy and material from the lithosphere to the hydrosphere. Thermally induced circulation...

  19. Reduction of Fe(III), Cr(VI), U(VI), and Tc(VII) by Deinococcus radiodurans R1

    International Nuclear Information System (INIS)

    Fredrickson, J.K.; Kostandarithes, H.M.; Li, S.W.; Plymake, A.E.; Daly, M.J.

    2000-01-01

    Deinococcus radiodurans is an exceptionally radiation-resistant microorganism capable of surviving acute exposures to ionizing radiation doses of 15,000 Gy and previously described as having a strictly aerobic respiratory metabolism. Under strict anaerobic conditions, D. radiodurans R1 reduced Fe(III)-nitrilotriacetic acid coupled to the oxidation of lactate to CO 2 and acetate but was unable to link this process to growth. D. radiodurans reduced the humic acid analog anthraquinone-2,6-disulfonate (AQDS) to its dihydroquinone form, AH 2 DS, which subsequently transferred electrons to the Fe(III) oxides hydrous ferric oxide and goethite via a previously described electron shuttle mechanism. D. radiodurans reduced the solid-phase Fe(III) oxides in the presence of either 0.1 mM AQDS or leonardite humic acids (2 mg ml -1 ) but not in their absence. D. radiodurans also reduced U(VI) and Tc(VII) in the presence of AQDS. In contrast, Cr(VI) was directly reduced in anaerobic cultures with lactate although the rate of reduction was higher in the presence of AQDS. The results are the first evidence that D. radiodurans can reduce Fe(III) coupled to the oxidation of lactate or other organic compounds. Also, D. radiodurans, in combination with humic acids or synthetic electron shuttle agents, can reduce U and Tc and thus has potential applications for remediation of metal- and radionuclide-contaminated sites where ionizing radiation or other DNA-damaging agents may restrict the activity of more sensitive organisms

  20. Use of Fe(III) oxalate for oxidativewastewater treatment; Einsatz von Fe(III)-Oxalat zur chemisch-oxidativen Abwasserbehandlung

    Energy Technology Data Exchange (ETDEWEB)

    Kim, S.M.; Vogelpohl, A. [Clausthal Univ., Clausthal-Zellerfeld (Germany). Inst. fuer Thermische Verfahrenstechnik

    1998-08-01

    Iron(III)-oxalate was used as an iron catalyst for the Photo Fenton reaction. Iron(III) oxalations ([Fe(C{sub 2}O{sub 4}){sub 3}]{sup 3-}) are reduced to Fe(II) by irradiation using near UV-light ({lambda} = 300 - 400 nm) or visible light ({lambda} > 400 nm). At the same time, CO{sub 2}{sup -} or C{sub 2}O{sub 4}{sup -}-radicals originate, which cause the secondary reduction of Fe(III) to Fe(II). By means of the photolytically regenerated Fe(II) ions, hydroxyl radicals are increasingly formed, so that the degradation of organic substances is accelerated. The work aimed to assess the catalytic effect of Fe(III) oxalate for photochemical oxidation processes and to establish the parameters influencing further treatment of leachate from a municipal waste sanitary landfill by means of technical-scale experiments. (orig.) [Deutsch] In der vorliegenden Arbeit wurde Eisen(III)-Oxalat als Eisenkatalysator fuer die Photo-Fenton-Reaktion eingesetzt. Eisen(III)-Oxalationen ([Fe(C{sub 2}O{sub 4}){sub 3}]{sup 3-}) werden durch Strahlung mit nahem UV-Licht ({lambda}=300 bis 400 nm) oder mit sichtbarem Licht ({lambda}>400 nm) zu Fe(II) reduziert. Gleichzeitig entstehen CO{sub 2}{sup .-} oder C{sub 2}O{sub 4}{sup .-}-Radikale, die eine sekundaere Reduktion von Fe(III) zu Fe(II) bewirken. Mit Hilfe der photolytiisch regenerierten Fe(II)-Ionen werden vermehrt Hydroxylradikale gebildet und damit die Abbaugeschwindigkeit der organischen Substanzen beschleunigt. Ziel der hier vorgestellten Arbeit war es, die katalytische Wirkung von Fe(III)-Oxalat fuer photochemische Oxidationsverfahren abzuschaetzen und die Einflussparameter zur weitergehenden Behandlung eines Deponiesickerwassers aus Hausmuelldeponie anhand von Technikumsversuchen zu ermitteln. (orig.)

  1. Ferrous Iron Oxidation under Varying pO2 Levels: The Effect of Fe(III)/Al(III) Oxide Minerals and Organic Matter.

    Science.gov (United States)

    Chen, Chunmei; Thompson, Aaron

    2018-01-16

    Abiotic Fe(II) oxidation by O 2 commonly occurs in the presence of mineral sorbents and organic matter (OM) in soils and sediments; however, this tertiary system has rarely been studied. Therefore, we examined the impacts of mineral surfaces (goethite and γ-Al 2 O 3 ) and organic matter [Suwannee River fulvic acid (SRFA)] on Fe(II) oxidation rates and the resulting Fe(III) (oxyhydr)oxides under 21 and 1% pO 2 at pH 6. We tracked Fe dynamics by adding 57 Fe(II) to 56 Fe-labeled goethite and γ-Al 2 O 3 and characterized the resulting solids using 57 Fe Mössbauer spectroscopy. We found Fe(II) oxidation was slower at low pO 2 and resulted in higher-crystallinity Fe(III) phases. Relative to oxidation of Fe(II) (aq) alone, both goethite and γ-Al 2 O 3 surfaces increased Fe(II) oxidation rates regardless of pO 2 levels, with goethite being the stronger catalyst. Goethite surfaces promoted the formation of crystalline goethite, while γ-Al 2 O 3 favored nano/small particle or disordered goethite and some lepidocrocite; oxidation of Fe(II) aq alone favored lepidocrocite. SRFA reduced oxidation rates in all treatments except the mineral-free systems at 21% pO 2 , and SRFA decreased Fe(III) phase crystallinity, facilitating low-crystalline ferrihydrite in the absence of mineral sorbents, low-crystalline lepidocrocite in the presence of γ-Al 2 O 3 , but either crystalline goethite or ferrihydrite when goethite was present. This work highlights that the oxidation rate, the types of mineral surfaces, and OM control Fe(III) precipitate composition.

  2. Photocatalytic reduction of nitrogen to ammonia with coprecipitated Fe(III) and Ti(IV) hydrous oxides

    Energy Technology Data Exchange (ETDEWEB)

    Tennakone, K.; Fernando, C.A.N.; Damayanthi, M.W.P.; Silva, L.H.K.; Wijeratne, W.; Wickramanayake, S.; Punchihewa, S.; Illeperuma, O.A.

    1988-01-01

    An aqueous suspension of coprecipitated hydrous oxides of Fe(III) and Ti(IV) is found to photocatalyse reduction of molecular nitrogen to ammonia with visible light. The activity of the complex catalyst is higher than that of pure hydrous ferric oxide which also catalyses the above reaction. It is suggested that hydrous TiO/sub 2/ acts as the hole transfer agent so that water oxidation takes place at the TiO/sub 2/ sites and nitrogen reduction at ferric oxide sites.

  3. Fe(III) fertilization mitigating net global warming potential and greenhouse gas intensity in paddy rice-wheat rotation systems in China.

    Science.gov (United States)

    Liu, Shuwei; Zhang, Ling; Liu, Qiaohui; Zou, Jianwen

    2012-05-01

    A complete accounting of net greenhouse gas balance (NGHGB) and greenhouse gas intensity (GHGI) affected by Fe(III) fertilizer application was examined in typical annual paddy rice-winter wheat rotation cropping systems in southeast China. Annual fluxes of soil carbon dioxide (CO(2)), methane (CH(4)) and nitrous oxide (N(2)O) were measured using static chamber method, and the net ecosystem exchange of CO(2) (NEE) was determined by the difference between soil CO(2) emissions (R(H)) and net primary production (NPP). Fe(III) fertilizer application significantly decreased R(H) without adverse effects on NPP of rice and winter wheat. Fe(III) fertilizer application decreased seasonal CH(4) by 27-44%, but increased annual N(2)O by 65-100%. Overall, Fe(III) fertilizer application decreased the annual NGHGB and GHGI by 35-47% and 30-36%, respectively. High grain yield and low greenhouse gas intensity can be reconciled by Fe(III) fertilizer applied at the local recommendation rate in rice-based cropping systems. Copyright © 2012 Elsevier Ltd. All rights reserved.

  4. Biogenic Calcium Phosphate Transformation in Soils over Millennium Time Scales

    Energy Technology Data Exchange (ETDEWEB)

    Sato, S.; Neves, E; Solomon, D; Liang, B; Lehmann, J

    2009-01-01

    Changes in bioavailability of phosphorus (P) during pedogenesis and ecosystem development have been shown for geogenic calcium phosphate (Ca-P). However, very little is known about long-term changes of biogenic Ca-P in soil. Long-term transformation characteristics of biogenic Ca-P were examined using anthropogenic soils along a chronosequence from centennial to millennial time scales. Phosphorus fractionation of Anthrosols resulted in overall consistency with the Walker and Syers model of geogenic Ca-P transformation during pedogenesis. The biogenic Ca-P (e.g., animal and fish bones) disappeared to 3% of total P within the first ca. 2,000 years of soil development. This change concurred with increases in P adsorbed on metal-oxides surfaces, organic P, and occluded P at different pedogenic time. Phosphorus K-edge X-ray absorption near-edge structure (XANES) spectroscopy revealed that the crystalline and therefore thermodynamically most stable biogenic Ca-P was transformed into more soluble forms of Ca-P over time. While crystalline hydroxyapatite (34% of total P) dominated Ca-P species after about 600-1,000 years, {Beta}-tricalcium phosphate increased to 16% of total P after 900-1,100 years, after which both Ca-P species disappeared. Iron-associated P was observable concurrently with Ca-P disappearance. Soluble P and organic P determined by XANES maintained relatively constant (58-65%) across the time scale studied. Conclusions - Disappearance of crystalline biogenic Ca-P on a time scale of a few thousand years appears to be ten times faster than that of geogenic Ca-P.

  5. Formation of Nano-crystalline Todorokite from Biogenic Mn Oxides

    Energy Technology Data Exchange (ETDEWEB)

    Feng, X.; Zhu, M; Ginder-Vogel, M; Ni, C; Parikh, S; Sparks, D

    2010-01-01

    Todorokite, as one of three main Mn oxide phases present in oceanic Mn nodules and an active MnO{sub 6} octahedral molecular sieve (OMS), has garnered much interest; however, its formation pathway in natural systems is not fully understood. Todorokite is widely considered to form from layer structured Mn oxides with hexagonal symmetry, such as vernadite ({delta}-MnO{sub 2}), which are generally of biogenic origin. However, this geochemical process has not been documented in the environment or demonstrated in the laboratory, except for precursor phases with triclinic symmetry. Here we report on the formation of a nanoscale, todorokite-like phase from biogenic Mn oxides produced by the freshwater bacterium Pseudomonas putida strain GB-1. At long- and short-range structural scales biogenic Mn oxides were transformed to a todorokite-like phase at atmospheric pressure through refluxing. Topotactic transformation was observed during the transformation. Furthermore, the todorokite-like phases formed via refluxing had thin layers along the c* axis and a lack of c* periodicity, making the basal plane undetectable with X-ray diffraction reflection. The proposed pathway of the todorokite-like phase formation is proposed as: hexagonal biogenic Mn oxide {yields} 10-{angstrom} triclinic phyllomanganate {yields} todorokite. These observations provide evidence supporting the possible bio-related origin of natural todorokites and provide important clues for understanding the transformation of biogenic Mn oxides to other Mn oxides in the environment. Additionally this method may be a viable biosynthesis route for porous, nano-crystalline OMS materials for use in practical applications.

  6. Mineralization by nanobacteria

    Science.gov (United States)

    Kajander, E. Olavi; Bjorklund, Michael; Ciftcioglu, Neva

    1998-07-01

    Nanobacteria are the smallest cell-walled bacteria, only recently discovered in human and cow blood and in commercial cell culture serum. In this study, we identified with energy-dispersive x-ray microanalysis and chemical analysis that all growth phases of nanobacteria produce biogenic apatite on their cell envelope. Fourier transform IR spectroscopy revealed the mineral as carbonate apatite. Previous models for stone formation have lead to a hypothesis that an elevated pH due to urease and/or alkaline phosphatase activity are important lithogenic factors. Our results indicate that carbonate apatite can be formed without these factors at pH 7.4 at physiological phosphate and calcium concentrations. Due to their specific macromolecules, nanobacteria can produce apatite very efficiency in media mimicking tissue fluids and glomerular filtrate and rapidly mineralizing most of available calcium and phosphate. This can be also monitored by (superscript 85)Sr incorporation and provides a unique model for in vitro studies on calcification. Recently, bacteria have been implicated in the formation of carbonate (hydroxy)fluorapatite in marine sediments. Apatite grains are found so commonly in sedimentary rocks that apatite is omitted in naming the stone. To prove that apatite and other minerals are formed by bacteria would implicate that the bacteria could be observed and their actions followed in stones. We have started to approach this in two ways. Firstly, by the use of sensitive methods for detecting specific bacterial components, like antigens, muramic acid and nucleic acids, that allow for detecting the presence of bacteria and, secondly, by follow-up of volatile bacterial metabolites observed by continuous monitoring with ion mobility spectrometry, IMCELL, working like an artificial, educatable smelling nose. The latter method might allow for remote real time detection of bacterial metabolism, a signature of life, in rocks via fractures of drillholes with or without

  7. The relationship between Al and Si in biogenic silica as determined by PIXE and XAS

    International Nuclear Information System (INIS)

    Beck, L.; Gehlen, M.; Flank, A.-M.; Bennekom, A.J. van; Beusekom, J.E.E. van

    2002-01-01

    Biogenic silica, one of the major constituents of marine sediments, is a potentially powerful paleoceanographic tool, revealing information on past productivity. Interpreting the sedimentary records of the biogenic silica requires, however, an understanding of its preservation. Dissolution of biogenic silica is controlled by the presence of trace elements such as Al. The work in this paper focuses on the association of Al and Si in biogenic silica. The composition and the atomic structure of cultured and natural diatoms were determined by using PIXE and XAS techniques. This study provides the first evidence for a structural association of Al and Si in biogenic silica

  8. Speleothems from Mawsmai and Krem Phyllut caves, Meghalaya, India: some evidences on biogenic activities

    Science.gov (United States)

    Baskar, Sushmitha; Baskar, R.; Lee, Natuschka; Theophilus, P. K.

    2009-05-01

    The Mawsmai cave and Krem Phyllut caves, East Khasi hills, Meghalaya, India has so far not yet attracted the attention of geomicrobiologists. Observations and hypotheses on the possible influence of identified microorganisms for speleothem formations in Meghalaya are reported for the first time. XRD studies identified calcite in speleothems and gypsum in cave wall deposits as the dominant minerals. SEM-EDAX showed interesting microfabric features showing strong resemblance with fossilised bacteria, calcified filaments, needle calcite and numerous nano scale calcite crystals, highly weathered and disintegrated crystals of calcite, that point towards a significant microbial influence in its genesis. Thin section petrography showed laminated stromatolitic features. The microorganisms identified by conventional isolation and further evaluation of isolates by molecular techniques include Bacillus cereus, Bacillus mycoides, Bacillus licheniformis, Micrococcus luteus, and Actinomycetes. Microscopic observations also showed unidentifiable cocci and four unidentifiable strains of CaSO4 (gypsum) precipitating bacteria. Experimental studies confirmed that these bacteria are able to precipitate calcium minerals (calcite, gypsum, minor amounts of dolomite) in the laboratory. These results allow us to postulate that species like these may contribute to active biogenic influence in the cave formations at Meghalaya.

  9. A Sensor for the Determination of Lindane Using PANI/Zn, Fe(III Oxides and Nylon 6,6/MWCNT/Zn, Fe(III Oxides Nanofibers Modified Glassy Carbon Electrode

    Directory of Open Access Journals (Sweden)

    Omolola E. Fayemi

    2016-01-01

    Full Text Available A simple reproducible and environmentally friendly PANI/Zn, Fe(III and Nylon 6,6/MWCNT/Zn, Fe(III oxides nanofibers modified glassy carbon electrode was prepared and used for the electrochemical reduction of lindane. The modified electrodes offer a high sensing current for lindane. The modified electrodes were highly stable with respect to time, so that the single electrode can be used for the multiple analysis of the lindane sample. Cyclic voltammetry and square wave voltammetry were used as the sensing techniques. The dynamic range for the lindane determination was between 9.9 × 10−12 mol/L and 5 × 10−6 mol/L with detection limits of 51 and 32 nM for Nylon 6,6/MWCNT/ZnO and Nylon 6,6/MWCNT/Fe3O4 sensors, respectively. The LoD value reveals that the best electrode is Nylon 6,6/MWCNT/Fe3O4. The analytical utility of the proposed method was checked with drinking water samples.

  10. Impact of Fe(III) as an effective electron-shuttle mediator for enhanced Cr(VI) reduction in microbial fuel cells: Reduction of diffusional resistances and cathode overpotentials

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Qiang [Key Laboratory of Industrial Ecology and Environmental Engineering, Ministry of Education (MOE), School of Environmental Science and Technology, Dalian University of Technology, Dalian 116024 (China); Huang, Liping, E-mail: lipinghuang@dlut.edu.cn [Key Laboratory of Industrial Ecology and Environmental Engineering, Ministry of Education (MOE), School of Environmental Science and Technology, Dalian University of Technology, Dalian 116024 (China); Pan, Yuzhen [College of Chemistry, Dalian University of Technology, Dalian 116024 (China); Quan, Xie [Key Laboratory of Industrial Ecology and Environmental Engineering, Ministry of Education (MOE), School of Environmental Science and Technology, Dalian University of Technology, Dalian 116024 (China); Li Puma, Gianluca, E-mail: g.lipuma@lboro.ac.uk [Environmental Nanocatalysis & Photoreaction Engineering, Department of Chemical Engineering, Loughborough University, Loughborough LE11 3TU (United Kingdom)

    2017-01-05

    Highlights: • Fe(III) shuttles electrons for enhanced reduction of Cr(VI) in MFCs. • The coulombic efficiency increases by 1.6 fold in the presence of Fe(III). • The reduction of Cr(VI) occurs via an indirect Fe(III) mediation mechanism. • Fe(III) decreases the diffusional resistances and the cathode overpotentials. - Abstract: The role of Fe(III) was investigated as an electron-shuttle mediator to enhance the reduction rate of the toxic heavy metal hexavalent chromium (Cr(VI)) in wastewaters, using microbial fuel cells (MFCs). The direct reduction of chromate (CrO{sub 4}{sup −}) and dichromate (Cr{sub 2}O{sub 7}{sup 2−}) anions in MFCs was hampered by the electrical repulsion between the negatively charged cathode and Cr(VI) functional groups. In contrast, in the presence of Fe(III), the conversion of Cr(VI) and the cathodic coulombic efficiency in the MFCs were 65.6% and 81.7%, respectively, 1.6 times and 1.4 folds as those recorded in the absence of Fe(III). Multiple analytical approaches, including linear sweep voltammetry, Tafel plot, cyclic voltammetry, electrochemical impedance spectroscopy and kinetic calculations demonstrated that the complete reduction of Cr(VI) occurred through an indirect mechanism mediated by Fe(III). The direct reduction of Cr(VI) with cathode electrons in the presence of Fe(III) was insignificant. Fe(III) played a critical role in decreasing both the diffusional resistance of Cr(VI) species and the overpotential for Cr(VI) reduction. This study demonstrated that the reduction of Cr(VI) in MFCs was effective in the presence of Fe(III), providing an alternative and environmentally benign approach for efficient remediation of Cr(VI) contaminated sites with simultaneous production of renewable energy.

  11. Characterization and Properties of Activated Carbon Prepared from Tamarind Seeds by KOH Activation for Fe(III) Adsorption from Aqueous Solution.

    Science.gov (United States)

    Mopoung, Sumrit; Moonsri, Phansiri; Palas, Wanwimon; Khumpai, Sataporn

    2015-01-01

    This research studies the characterization of activated carbon from tamarind seed with KOH activation. The effects of 0.5 : 1-1.5 : 1 KOH : tamarind seed charcoal ratios and 500-700°C activation temperatures were studied. FTIR, SEM-EDS, XRD, and BET were used to characterize tamarind seed and the activated carbon prepared from them. Proximate analysis, percent yield, iodine number, methylene blue number, and preliminary test of Fe(III) adsorption were also studied. Fe(III) adsorption was carried out by 30 mL column with 5-20 ppm Fe(III) initial concentrations. The percent yield of activated carbon prepared from tamarind seed with KOH activation decreased with increasing activation temperature and impregnation ratios, which were in the range from 54.09 to 82.03 wt%. The surface functional groups of activated carbon are O-H, C=O, C-O, -CO3, C-H, and Si-H. The XRD result showed high crystallinity coming from a potassium compound in the activated carbon. The main elements found in the activated carbon by EDS are C, O, Si, and K. The results of iodine and methylene blue adsorption indicate that the pore size of the activated carbon is mostly in the range of mesopore and macropore. The average BET pore size and BET surface area of activated carbon are 67.9764 Å and 2.7167 m(2)/g, respectively. Finally, the tamarind seed based activated carbon produced with 500°C activation temperature and 1.0 : 1 KOH : tamarind seed charcoal ratio was used for Fe(III) adsorption test. It was shown that Fe(III) was adsorbed in alkaline conditions and adsorption increased with increasing Fe(III) initial concentration from 5 to 20 ppm with capacity adsorption of 0.0069-0.019 mg/g.

  12. Synthetic, potentiometric and spectroscopic studies of chelation between Fe(III) and 2,5-DHBA supports salicylate-mode of siderophore binding interactions.

    Science.gov (United States)

    Porwal, Suheel K; Furia, Emilia; Harris, Michael E; Viswanathan, Rajesh; Devireddy, L

    2015-04-01

    Catecholate type enterobactin, a prototype siderophore, comprises 2,3-dihydroxybenzoic acid (2,3-DHBA) cyclically linked to serine in E. coli. The existence of iron-chelating ligands in humans is a recent discovery, however, the basic chemical interactions between 2,5-dihydroxybenzoic acid and Fe(III) ion remain poorly understood. Achieving an accurate description of the fundamental Fe(III) binding properties of 2,5-DHBA is essential for understanding its role in iron transport mechanisms. Here, we show that 2,5-DHBA binds iron in a salicylate mode via a two-step kinetic mechanism by UV spectroscopy. Complexation between Fe(III) salt and 2,5-DHBA initially occurs at 1:1 ratio (of ligand to metal) and binding resulting in higher-order complexes continues at higher concentrations. Through potentiometric measurements we quantify the distribution of Fe(III)-2,5-DHBA complexes with 1:1, 1:2 and 1:3 stoichiometry. The formation of 1:3 complexes is further supported through high-resolution mass spectrometry. Further, using kinetic and equilibrium UV spectroscopy, we report Fe(III)-2,5-DHBA complex formation at a pH range of 2.5-9.0 at 298.15K in water. Maximum complexation occurred at a pH range of 4.5-6.5 consistent with deprotonation of the carboxylic acid proton. Equilibrium measurements and stopped-flow kinetics show that complexation rate constants were independent of concentrations of 2,5-DHBA. Together the data supports a model in which the rate-determining step involves rearrangement of ligands on an initial complex formed by reversible binding between the carboxylate group of 2,5-DHBA and Fe(III). Copyright © 2014 Elsevier Inc. All rights reserved.

  13. Adatom Fe(III on the hematite surface: Observation of a key reactive surface species

    Directory of Open Access Journals (Sweden)

    Rosso Kevin M

    2004-06-01

    Full Text Available The reactivity of a mineral surface is determined by the variety and population of different types of surface sites (e.g., step, kink, adatom, and defect sites. The concept of "adsorbed nutrient" has been built into crystal growth theories, and many other studies of mineral surface reactivity appeal to ill-defined "active sites." Despite their theoretical importance, there has been little direct experimental or analytical investigation of the structure and properties of such species. Here, we use ex-situ and in-situ scanning tunneling microcopy (STM combined with calculated images based on a resonant tunneling model to show that observed nonperiodic protrusions and depressions on the hematite (001 surface can be explained as Fe in an adsorbed or adatom state occupying sites different from those that result from simple termination of the bulk mineral. The number of such sites varies with sample preparation history, consistent with their removal from the surface in low pH solutions.

  14. Modeling Global Biogenic Emission of Isoprene: Exploration of Model Drivers

    Science.gov (United States)

    Alexander, Susan E.; Potter, Christopher S.; Coughlan, Joseph C.; Klooster, Steven A.; Lerdau, Manuel T.; Chatfield, Robert B.; Peterson, David L. (Technical Monitor)

    1996-01-01

    Vegetation provides the major source of isoprene emission to the atmosphere. We present a modeling approach to estimate global biogenic isoprene emission. The isoprene flux model is linked to a process-based computer simulation model of biogenic trace-gas fluxes that operates on scales that link regional and global data sets and ecosystem nutrient transformations Isoprene emission estimates are determined from estimates of ecosystem specific biomass, emission factors, and algorithms based on light and temperature. Our approach differs from an existing modeling framework by including the process-based global model for terrestrial ecosystem production, satellite derived ecosystem classification, and isoprene emission measurements from a tropical deciduous forest. We explore the sensitivity of model estimates to input parameters. The resulting emission products from the global 1 degree x 1 degree coverage provided by the satellite datasets and the process model allow flux estimations across large spatial scales and enable direct linkage to atmospheric models of trace-gas transport and transformation.

  15. Biomass burning: Combustion emissions, satellite imagery, and biogenic emissions

    International Nuclear Information System (INIS)

    Levine, J.S.; Cofer, W.R III; Rhinehart, R.P.; Cahoon, D.R. J.; Winstead, E.L.; Sebacher, S.; Sebacher, D.I.; Stocks, B.J.

    1991-01-01

    This chapter deals with two different, but related, aspects of biomass burning. The first part of the chapter deals with a technique to estimate the instantaneous emissions of trace gases produced by biomass burning using satellite imagery. The second part of the chapter concerns the recent discovery that burning results in significantly enhanced biogenic emissions of N 2 O, NO, and CH 4 . Hence, biomass burning has both an immediate and long-term impact on the production of trace gases to the atmosphere. The objective of this research is to better assess and quantify the role of this research is to better assess and quantify the role and impact of biomass as a driver for global change. It will be demonstrated that satellite imagery of fires may be used to estimate combustion emissions and may in the future be used to estimate the long-term postburn biogenic emissions of trace gases to the atmosphere

  16. Physiology, Fe(II oxidation, and Fe mineral formation by a marine planktonic cyanobacterium grown under ferruginous conditions

    Directory of Open Access Journals (Sweden)

    Elizabeth D. Swanner

    2015-10-01

    Full Text Available Evidence for Fe(II oxidation and deposition of Fe(III-bearing minerals from anoxic or redox-stratified Precambrian oceans has received support from decades of sedimentological and geochemical investigation of Banded Iron Formations (BIF. While the exact mechanisms of Fe(II oxidation remains equivocal, reaction with O2 in the marine water column, produced by cyanobacteria or early oxygenic phototrophs, was likely. In order to understand the role of cyanobacteria in the deposition of Fe(III minerals to BIF, we must first know how planktonic marine cyanobacteria respond to ferruginous (anoxic and Fe(II-rich waters in terms of growth, Fe uptake and homeostasis, and Fe mineral formation. We therefore grew the common marine cyanobacterium Synechococcus PCC 7002 in closed bottles that began anoxic, and contained Fe(II concentrations that span the range of possible concentrations in Precambrian seawater. These results, along with cell suspension experiments, indicate that Fe(II is likely oxidized by this strain via chemical oxidation with oxygen produced during photosynthesis, and not via any direct enzymatic or photosynthetic pathway. Imaging of the cell-mineral aggregates with scanning electron microscopy (SEM and confocal laser scanning microscopy (CLSM are consistent with extracellular precipitation of Fe(III (oxyhydroxide minerals, but that >10% of Fe(III sorbs to cell surfaces rather than precipitating. Proteomic experiments support the role of reactive oxygen species (ROS in Fe(II toxicity to Synechococcus PCC 7002. The proteome expressed under low Fe conditions included multiple siderophore biosynthesis and siderophore and Fe transporter proteins, but most siderophores are not expressed during growth with Fe(II. These results provide a mechanistic and quantitative framework for evaluating the geochemical consequences of perhaps life’s greatest metabolic innovation, i.e. the evolution and activity of oxygenic photosynthesis, in ferruginous

  17. BAECC Biogenic Aerosols - Effects on Clouds and Climate

    Energy Technology Data Exchange (ETDEWEB)

    Petäjä, Tuukka [Univ. of Helsinki (Finland); Moisseev, Dmitri [Univ. of Helsinki (Finland); Sinclair, Victoria [Univ. of Helsinki (Finland); O' Connor, Ewan J. [Finnish Meteorological Institute, Helsinki (Finland); Manninen, Antti J. [Univ. of Helsinki (Finland); Levula, Janne [Univ. of Helsinki (Finland); Väänänen, Riikka [Univ. of Helsinki (Finland); Heikkinen, Liine [Univ. of Helsinki (Finland); Äijälä, Mikko [Univ. of Helsinki (Finland); Aalto, Juho [Univ. of Helsinki (Finland); Bäck, Jaana [University of Helsinki, Finland

    2015-11-01

    Biogenic Aerosols - Effects on Clouds and Climate (BAECC)”, featured the U.S. Department of Energy’s Atmospheric Radiation Measurement (ARM) Program’s 2nd Mobile Facility (AMF2) in Hyytiälä, Finland. It operated for an 8-month intensive measurement campaign from February to September 2014. The main research goal was to understand the role of biogenic aerosols in cloud formation. One of the reasons to perform BAECC study in Hyytiälä was the fact that it hosts SMEAR-II (Station for Measuring Forest Ecosystem-Atmosphere Relations), which is one of the world’s most comprehensive surface in-situ observation sites in a boreal forest environment. The station has been measuring atmospheric aerosols, biogenic emissions and an extensive suite of parameters relevant to atmosphere-biosphere interactions continuously since 1996. The BAECC enables combining vertical profiles from AMF2 with surface-based in-situ SMEAR-II observations and allows the processes at the surface to be directly related to processes occurring throughout the entire tropospheric column. With the inclusion of extensive surface precipitation measurements, and intensive observation periods involving aircraft flights and novel radiosonde launches, the complementary observations of AMF2 and SMEAR-II provide a unique opportunity for investigating aerosol-cloud interactions, and cloud-to-precipitation processes. The BAECC dataset will initiate new opportunities for evaluating and improving models of aerosol sources and transport, cloud microphysical processes, and boundary-layer structures.

  18. Time Resolved Measurements of Primary Biogenic Aerosol Particles in Amazonia

    Science.gov (United States)

    Wollny, A. G.; Garland, R.; Pöschl, U.

    2009-04-01

    Biogenic aerosols are ubiquitous in the Earth's atmosphere and they influence atmospheric chemistry and physics, the biosphere, climate, and public health. They play an important role in the spread of biological organisms and reproductive materials, and they can cause or enhance human, animal, and plant diseases. Moreover, they influence the Earth's energy budget by scattering and absorbing radiation, and they can initiate the formation of clouds and precipitation as cloud condensation and ice nuclei. The composition, abundance, and origin of biogenic aerosol particles and components are, however, still not well understood and poorly quantified. Prominent examples of primary biogenic aerosol particles, which are directly emitted from the biosphere to the atmosphere, are pollen, bacteria, fungal spores, viruses, and fragments of animals and plants. During the Amazonian Aerosol Characterization Experiment (AMAZE-08) a large number of aerosol and gas-phase measurements were taken on a remote site close to Manaus, Brazil, during a period of five weeks in February and March 2008. This presented study is focused on data from an ultraviolet aerodynamic particle sizer (UVAPS, TSI inc.) that has been deployed for the first time in Amazonia. In this instrument, particle counting and aerodynamic sizing over the range of 0.5-20 µm are complemented by the measurement of UV fluorescence at 355 nm (excitation) and 420-575 nm (emission), respectively. Fluorescence at these wavelengths is characteristic for reduced pyridine nucleotides (e.g., NAD(P)H) and for riboflavin, which are specific for living cells. Thus particles exhibiting fluorescence signals can be regarded as "viable aerosols" or "fluorescent bioparticles" (FBAP), and their concentration can be considered as lower limit for the actual abundance of primary biogenic aerosol particles. Data from the UVAPS were averaged over 5 minute time intervals. The presence of bioparticles in the observed size range has been

  19. Influence of pH, competing ions, and salinity on the sorption of strontium and cobalt onto biogenic hydroxyapatite

    Science.gov (United States)

    Handley-Sidhu, Stephanie; Mullan, Thomas K.; Grail, Quentin; Albadarneh, Malek; Ohnuki, Toshihiko; Macaskie, Lynne E.

    2016-03-01

    Anthropogenic radionuclides contaminate a range of environments as a result of nuclear activities, for example, leakage from waste storage tanks/ponds (e.g. Hanford, USA or Sellafield sites, UK) or as a result of large scale nuclear accidents (e.g. Chernobyl, Ukraine or Fukushima, Japan). One of the most widely applied remediation techniques for contaminated waters is the use of sorbent materials (e.g. zeolites and apatites). However, a key problem at nuclear contaminated sites is the remediation of radionuclides from complex chemical environments. In this study, biogenic hydroxyapatite (BHAP) produced by Serratia sp. bacteria was investigated for its potential to remediate surrogate radionuclides (Sr2+ and Co2+) from environmentally relevant waters by varying pH, salinity and the type and concentration of cations present. The sorption capacity of the BHAP for both Sr2+ and Co2+ was higher than for a synthetically produced hydroxyapatite (HAP) in the solutions tested. BHAP also compared favorably against a natural zeolite (as used in industrial decontamination) for Sr2+ and Co2+ uptake from saline waters. Results confirm that hydroxyapatite minerals of high surface area and amorphous calcium phosphate content, typical for biogenic sources, are suitable restoration or reactive barrier materials for the remediation of complex contaminated environments or wastewaters.

  20. 40K in the Black Sea: a proxy to estimate biogenic sedimentation

    International Nuclear Information System (INIS)

    Gulin, S.B.; Gulina, L.V.; Sidorov, I.G.; Proskurnin, V.Yu.; Duka, M.S.; Moseichenko, I.N.; Rodina, E.A.

    2014-01-01

    An approach to estimate the rate of biogenic sedimentation in the Black Sea using the naturally occurring radionuclide 40 K has been considered. It allows assessment of the contribution of suspended matter of biological origin to the overall sediment accumulation in the Black Sea coastal, shelf and deep-water areas. Based upon this method, a relationship between the biogenic fraction of the seabed sediments and the water depth has been established with a view to differentiating the contributions of allochthonous and autochthonous suspended matter to the sedimentation rate. Overall, 40 K can be considered as an easily applicable proxy to assess sedimentation rate of biogenic fraction of particulate matter in marine environments. - Highlights: • 40 K-based approach was developed to assess biogenic sedimentation in the Black Sea. • 40 K-derived relationship between biogenic sedimentation and water depth was traced. • 40 K is an easily applicable proxy to estimate rate of biogenic sedimentation in sea

  1. Environmentally-relevant concentrations of Al(III) and Fe(III) cations induce aggregation of free DNA by complexation with phosphate group.

    Science.gov (United States)

    Qin, Chao; Kang, Fuxing; Zhang, Wei; Shou, Weijun; Hu, Xiaojie; Gao, Yanzheng

    2017-10-15

    Environmental persistence of free DNA is influenced by its complexation with other chemical species and its aggregation mechanisms. However, it is not well-known how naturally-abundant metal ions, e.g., Al(III) and Fe(III), influence DNA aggregation. This study investigated aggregation behaviors of model DNA from salmon testes as influenced by metal cations, and elucidated the predominant mechanism responsible for DNA aggregation. Compared to monovalent (K + and Na + ) and divalent (Ca 2+ and Mg 2+ ) cations, Al(III) and Fe(III) species in aqueous solution caused rapid DNA aggregations. The maximal DNA aggregation occurred at 0.05 mmol/L Al(III) or 0.075 mmol/L Fe(III), respectively. A combination of atomic force microscopy, transmission electron microscopy, Fourier transform infrared spectroscopy, and X-ray photoelectron spectroscopy revealed that Al(III) and Fe(III) complexed with negatively charged phosphate groups to neutralize DNA charges, resulting in decreased electrostatic repulsion and subsequent DNA aggregation. Zeta potential measurements and molecular computation further support this mechanism. Furthermore, DNA aggregation was enhanced at higher temperature and near neutral pH. Therefore, DNA aggregation is collectively determined by many environmental factors such as ion species, temperature, and solution pH. Copyright © 2017 Elsevier Ltd. All rights reserved.

  2. Adsorption of Ni(II, Cu(II and Fe(III from Aqueous Solutions Using Activated Carbon

    Directory of Open Access Journals (Sweden)

    A. Edwin Vasu

    2008-01-01

    Full Text Available An activated carbon was tested for its ability to remove transition metal ions from aqueous solutions. Physical, Chemical and liquid-phase adsorption characterizations of the carbon were done following standard procedures. Studies on the removal of Ni(II, Cu(II and Fe(III ions were attempted by varying adsorbate dose, pH of the metal ion solution and time in batch mode. The equilibrium adsorption data were fitted with Freundlich, Langmuir and Redlich-Peterson isotherms and the isotherm constants were evaluated. Time variation studies indicate that adsorptions follow pseudo-second order kinetics. pH was found to have a significant role to play in the adsorption. The processes were endothermic and the thermodynamic parameters were evaluated. Desorption studies indicate that ion-exchange mechanism is operating.

  3. A low-spin Fe(III) complex with 100-ps ligand-to-metal charge transfer photoluminescence

    DEFF Research Database (Denmark)

    Chabera, Pavel; Liu, Yizhu; Prakash, Om

    2017-01-01

    sufficiently to realize a long charge-transfer lifetime of 100 picoseconds (ps) and room-temperature photoluminescence. This species is a low-spin Fe(III) d(5) complex, and emission occurs from a long-lived doublet ligand-to-metal charge-transfer ((LMCT)-L-2) state that is rarely seen for transition-metal...... complexes(4,16,17). The absence of intersystem crossing, which often gives rise to large excited-state energy losses in transition-metal complexes, enables the observation of spin-allowed emission directly to the ground state and could be exploited as an increased driving force in photochemical reactions......Transition-metal complexes are used as photosensitizers(1), in light-emitting diodes, for biosensing and in photocatalysis(2). A key feature in these applications is excitation from the ground state to a charge-transfer state(3,4); the long charge-transfer-state lifetimes typical for complexes...

  4. Photoinduced electron transfer between Fe(III) and adenosine triphosphate-BODIPY conjugates: Application to alkaline-phosphatase-linked immunoassay.

    Science.gov (United States)

    Lin, Jia-Hui; Yang, Ya-Chun; Shih, Ya-Chen; Hung, Szu-Ying; Lu, Chi-Yu; Tseng, Wei-Lung

    2016-03-15

    Fluorescent boron dipyrromethene (BODIPY) analogs are often used as sensors for detecting various species because of their relatively high extinction coefficients, outstanding fluorescence quantum yields, photostability, and pH-independent fluorescence. However, there is little-to-no information in the literature that describes the use of BODIPY analogs for detecting alkaline phosphatase (ALP) activity and inhibition. This study discovered that the fluorescence of BODIPY-conjugated adenosine triphosphate (BODIPY-ATP) was quenched by Fe(III) ions through photoinduced electron transfer. The ALP-catalyzed hydrolysis of BODIPY-ATP resulted in the formation of BODIPY-adenosine and phosphate ions. The fluorescence of the generated BODIPY-adenosine was insensitive to the change in the concentration of Fe(III) ions. Thus, the Fe(III)-induced fluorescence quenching of BODIPY-ATP can be paired with its ALP-mediated dephosphorylation to design a turn-on fluorescence probe for ALP sensing. A method detection limit at a signal-to-noise ratio of 3 for ALP was estimated to be 0.02 units/L (~6 pM; 1 ng/mL). This probe was used for the screening of ALP inhibitors, including Na3VO4, imidazole, and arginine. Because ALP is widely used in enzyme-linked immunosorbent assays, the probe was coupled to an ALP-linked immunosorbent assay for the sensitive and selective detection of immunoglobulin G (IgG). The lowest detectable concentration for IgG in this system was 5 ng/mL. Compared with the use of 3,6-fluorescein diphosphate as a signal reporter in an ALP-linked immunosorbent assay, the proposed system provided comparable sensitivity, large linear range, and high stability over temperature and pH changes. Copyright © 2015 Elsevier B.V. All rights reserved.

  5. The formation of light absorbing insoluble organic compounds from the reaction of biomass burning precursors and Fe(III)

    Science.gov (United States)

    Lavi, Avi; Lin, Peng; Bhaduri, Bhaskar; Laskin, Alexander; Rudich, Yinon

    2017-04-01

    Dust particles and volatile organic compounds from fuel or biomass burning are two major components that affect air quality in urban polluted areas. We characterized the products from the reaction of soluble Fe(III), a reactive transition metal originating from dust particles dissolution processes, with phenolic compounds , namely, guaiacol, syringol, catechol, o- and p- cresol that are known products of incomplete fuel and biomass combustion but also from other natural sources such as humic compounds degradation. We found that under acidic conditions comparable to those expected on a dust particle surface, phenolic compounds readily react with dissolved Fe(III), leading to the formation of insoluble polymeric compounds. We characterized the insoluble products by x-ray photoelectron microscopy, UV-Vis spectroscopy, mass spectrometry, elemental analysis and thermo-gravimetric analysis. We found that the major chromophores formed are oligomers (from dimers to pentamers) of the reaction precursors that efficiently absorb light between 300nm and 500nm. High variability of the mass absorption coefficient of the reaction products was observed with catechol and guaiacol showing high absorption at the 300-500nm range that is comparable to that of brown carbon (BrC) from biomass burning studies. The studied reaction is a potential source for the in-situ production of secondary BrC material under dark conditions. Our results suggest a reaction path for the formation of bio-available iron in coastal polluted areas where dust particles mix with biomass burning pollution plumes. Such mixing can occur, for instance in the coast of West Africa or North Africa during dust and biomass burning seasons

  6. Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction.

    Science.gov (United States)

    Beliaev, A S; Saffarini, D A

    1998-12-01

    Iron and manganese oxides or oxyhydroxides are abundant transition metals, and in aquatic environments they serve as terminal electron acceptors for a large number of bacterial species. The molecular mechanisms of anaerobic metal reduction, however, are not understood. Shewanella putrefaciens is a facultative anaerobe that uses Fe(III) and Mn(IV) as terminal electron acceptors during anaerobic respiration. Transposon mutagenesis was used to generate mutants of S. putrefaciens, and one such mutant, SR-21, was analyzed in detail. Growth and enzyme assays indicated that the mutation in SR-21 resulted in loss of Fe(III) and Mn(IV) reduction but did not affect its ability to reduce other electron acceptors used by the wild type. This deficiency was due to Tn5 inactivation of an open reading frame (ORF) designated mtrB. mtrB encodes a protein of 679 amino acids and contains a signal sequence characteristic of secreted proteins. Analysis of membrane fractions of the mutant, SR-21, and wild-type cells indicated that MtrB is located on the outer membrane of S. putrefaciens. A 5.2-kb DNA fragment that contains mtrB was isolated and completely sequenced. A second ORF, designated mtrA, was found directly upstream of mtrB. The two ORFs appear to be arranged in an operon. mtrA encodes a putative 10-heme c-type cytochrome of 333 amino acids. The N-terminal sequence of MtrA contains a potential signal sequence for secretion across the cell membrane. The amino acid sequence of MtrA exhibited 34% identity to NrfB from Escherichia coli, which is involved in formate-dependent nitrite reduction. To our knowledge, this is the first report of genes encoding proteins involved in metal reduction.

  7. Preliminary characterization and biological reduction of putative biogenic iron oxides (BIOS) from the Tonga-Kermadec Arc, southwest Pacific Ocean.

    Science.gov (United States)

    Langley, S; Igric, P; Takahashi, Y; Sakai, Y; Fortin, D; Hannington, M D; Schwarz-Schampera, U

    2009-01-01

    Sediment samples were obtained from areas of diffuse hydrothermal venting along the seabed in the Tonga sector of the Tonga-Kermadec Arc, southwest Pacific Ocean. Sediments from Volcano 1 and Volcano 19 were analyzed by X-ray diffraction (XRD) and found to be composed primarily of the iron oxyhydroxide mineral, two-line ferrihydrite. XRD also suggested the possible presence of minor amounts of more ordered iron (hydr)oxides (including six-line ferrihydrite, goethite/lepidocrocite and magnetite) in the biogenic iron oxides (BIOS) from Volcano 1; however, Mössbauer spectroscopy failed to detect any mineral phases more crystalline than two-line ferrihydrite. The minerals were precipitated on the surfaces of abundant filamentous microbial structures. Morphologically, some of these structures were similar in appearance to the known iron-oxidizing genus Mariprofundus spp., suggesting that the sediments are composed of biogenic iron oxides. At Volcano 19, an areally extensive, active vent field, the microbial cells appeared to be responsible for the formation of cohesive chimney-like structures of iron oxyhydroxide, 2-3 m in height, whereas at Volcano 1, an older vent field, no chimney-like structures were apparent. Iron reduction of the sediment material (i.e. BIOS) by Shewanella putrefaciens CN32 was measured, in vitro, as the ratio of [total Fe(II)]:[total Fe]. From this parameter, reduction rates were calculated for Volcano 1 BIOS (0.0521 day(-1)), Volcano 19 BIOS (0.0473 day(-1)), and hydrous ferric oxide, a synthetic two-line ferrihydrite (0.0224 day(-1)). Sediments from both BIOS sites were more easily reduced than synthetic ferrihydrite, which suggests that the decrease in effective surface area of the minerals within the sediments (due to the presence of the organic component) does not inhibit subsequent microbial reduction. These results indicate that natural, marine BIOS are easily reduced in the presence of dissimilatory iron-reducing bacteria, and that the

  8. Targeting polyamines and biogenic amines by green tea epigallocatechin-3-gallate.

    Science.gov (United States)

    Melgarejo, Esther; Urdiales, José Luis; Sánchez-Jiménez, Francisca; Medina, Miguel Angel

    2010-02-01

    Biogenic amines and polyamines are organic polycations derived from aromatic or cationic amino acids. They exert pleiotropic effects, more related to intercellular communication in the case of biogenic amines, and to intracellular signaling in the case of polyamines. The bioactive compound epigallocatechin-3-gallate (EGCG), a major component of green tea, has been shown to target key enzyme of biogenic amine and polyamine metabolic pathways. Herein, we review the specific effects of EGCG on concrete molecular targets of both biogenic amine and polyamine metabolic pathways, and discuss the relevance of these data to support the potential therapeutic interest of this compound.

  9. Control of Biogenic Amines in Fermented Sausages: Role of Starter Cultures

    Science.gov (United States)

    Latorre-Moratalla, M.L.; Bover-Cid, Sara; Veciana-Nogués, M.T.; Vidal-Carou, M.C.

    2012-01-01

    Biogenic amines show biological activity and exert undesirable physiological effects when absorbed at high concentrations. Biogenic amines are mainly formed by microbial decarboxylation of amino acids and thus are usually present in a wide range of foods, fermented sausages being one of the major biogenic amine sources. The use of selected starter cultures is one of the best technological measures to control aminogenesis during meat fermentation. Although with variable effectiveness, several works show the ability of some starters to render biogenic amine-free sausages. In this paper, the effect of different starter culture is reviewed and the factors determining their performance discussed. PMID:22586423

  10. Control of biogenic amines in fermented sausages: role of starter cultures

    Directory of Open Access Journals (Sweden)

    Mariluz eLatorre-Moratalla

    2012-05-01

    Full Text Available Biogenic amines show biological activity and exert undesirable physiological effects when absorbed at high concentrations. Biogenic amines are mainly formed by microbial decarboxylation of amino acids and thus are usually present in a wide range of foods, fermented sausages being one of the major biogenic amine sources. The use of selected starter cultures is one of the best technological measures to control aminogenesis during meat fermentation. Although with variable effectiveness, several works show the ability of some starters to render biogenic amine-free sausages. In this paper, the effect of different starter culture is reviewed and the factors determining their performance discussed.

  11. Determination of biogenic component in waste and liquid fuels by the 14C method

    OpenAIRE

    Krajcar Bronić, Ines; Barešić, Jadranka; Horvatinčić, Nada

    2015-01-01

    Intensive use of fossil fuels for energy production and transport during 20th century caused an increase of CO2 concentration in the atmosphere. The increase of CO2 concentration can be slowed down by the use of biogenic materials for energy production and/or transport. One of the method for determination of the fraction of the biogenic component in any type of fuel or waste is the 14C method, which is based on different content of 14C in biogenic and in fossil component: while the biogenic c...

  12. LBA-ECO TG-02 Biogenic VOC Emissions from Brazilian Amazon Forest and Pasture Sites

    Data.gov (United States)

    National Aeronautics and Space Administration — ABSTRACT: This data set reports concentrations of biogenic volatile organic compounds (BVOCs) collected from tethered balloon-sampling platforms above selected...

  13. LBA-ECO TG-02 Biogenic VOC Emissions from Brazilian Amazon Forest and Pasture Sites

    Data.gov (United States)

    National Aeronautics and Space Administration — This data set reports concentrations of biogenic volatile organic compounds (BVOCs) collected from tethered balloon-sampling platforms above selected forest and...

  14. Minerals Yearbook, volume I, Metals and Minerals

    Science.gov (United States)

    ,

    2018-01-01

    The U.S. Geological Survey (USGS) Minerals Yearbook discusses the performance of the worldwide minerals and materials industries and provides background information to assist in interpreting that performance. Content of the individual Minerals Yearbook volumes follows:Volume I, Metals and Minerals, contains chapters about virtually all metallic and industrial mineral commodities important to the U.S. economy. Chapters on survey methods, summary statistics for domestic nonfuel minerals, and trends in mining and quarrying in the metals and industrial mineral industries in the United States are also included.Volume II, Area Reports: Domestic, contains a chapter on the mineral industry of each of the 50 States and Puerto Rico and the Administered Islands. This volume also has chapters on survey methods and summary statistics of domestic nonfuel minerals.Volume III, Area Reports: International, is published as four separate reports. These regional reports contain the latest available minerals data on more than 180 foreign countries and discuss the importance of minerals to the economies of these nations and the United States. Each report begins with an overview of the region’s mineral industries during the year. It continues with individual country chapters that examine the mining, refining, processing, and use of minerals in each country of the region and how each country’s mineral industry relates to U.S. industry. Most chapters include production tables and industry structure tables, information about Government policies and programs that affect the country’s mineral industry, and an outlook section.The USGS continually strives to improve the value of its publications to users. Constructive comments and suggestions by readers of the Minerals Yearbook are welcomed.

  15. Multivitamin/Mineral Supplements

    Science.gov (United States)

    ... en español Health Professional Other Resources Multivitamin/mineral Supplements Fact Sheet for Consumers Have a question? Ask ... MVMs? Disclaimer What are multivitamin/mineral (MVM) dietary supplements? Multivitamin/mineral (MVM) supplements contain a combination of ...

  16. Organo-mineral interactions in Pseudomonas putida-birnessite assemblages: Impact on mineral reactivity

    Science.gov (United States)

    Simanova, Anna; Kroll, Alexandra; Pena, Jasquelin

    2016-04-01

    The ability of microorganisms to precipitate biogenic birnessite nanoparticles is widely spread in the bacterial and fungal trees of life, with this process accounting largely for the formation of birnessite in nature. Birnessite minerals occur typically as nanoparticles that exhibit significant chemical and structural disorder. Furthermore, the mineral is embedded within a biomass matrix composed of microbial cells and extracellular polymeric substances, where the biomass not only provides reactive surfaces but can mediate electron transfer reactions. The overarching question guiding our research is: How do nanoscale properties and admixing with microbial biomass modify the reactivity of Mn oxide minerals? In this study, we investigate the biomass-birnessite composites of Pseudomonas putida GB-1 biomass and δ-MnO2 nanoparticles. We characterized the structure and composition of the mineral fraction using X-ray diffraction, Mn K-edge X-ray absorption spectroscopy and wet-chemical methods. To characterize the biomass fraction, we employed FTIR spectroscopy and size-exclusion chromatography analysis of the extracellular polymeric substances. Finally, we measured Ni(II) sorption isotherms at pH 6 and Ni K-edge EXAFS spectra to determine the extent and mechanism of Ni sorption in the biomass-mineral composites and in biomass-only and mineral-only systems. This approach provided direct and indirect evidence for the extent of organo-mineral interactions in the composites, as well as a direct measure of sorption reactivity in the composites relative to biomass-only and mineral-only systems. We found that admixing of mineral nanoparticles with biomass reduced the reactivity of the edge sites of birnessite particles towards Ni(II) through the attachment of organic moieties to the mineral particles and/or modification of the assemblage surface charge properties. In addition, the interaction of biomass components with MnO2 particles leads to partial Mn(IV) reduction and

  17. South Africa's mineral industry

    International Nuclear Information System (INIS)

    1985-06-01

    The main aim of the Minerals Bureau in presenting this annual review is to provide an up-to-date reference document on the current state of the mineral industry in South Africa. This includes a brief look at the production, trade, economy, resources and deposits of precious metals and minerals, energy minerals, metallic minerals, and non-metallic minerals. One article discusses the production, trade, export, deposits and economy of uranium

  18. Heavy mineral placers

    Digital Repository Service at National Institute of Oceanography (India)

    Gujar, A.R.

    ], which contains economic quantities of valuable minerals such as gold, tin and platinum etc. Placer deposit can also be defined as a “mineral deposit formed by the process of mechanical concentration of mineral particles from weathered debris... Content-Type text/plain; charset=UTF-8 32 Heavy mineral placers A. R. Gujar National Institute of Oceanography, Dona-Paula, Goa-403004 agujar@nio.org Heavy mineral placers Heavy mineral placer deposit is defined as “Alluvial...

  19. Cave Biosignature Suites: Microbes, Minerals, and Mars

    Science.gov (United States)

    Boston, P. J.; Spilde, M. N.; Northup, D. E.; Melim, L. A.; Soroka, D. S.; Kleina, L. G.; Lavoie, K. H.; Hose, L. D.; Mallory, L. M.; Dahm, C. N.; Crossey, L. J.; Schelble, R. T.

    2001-03-01

    Earth's subsurface offers one of the best possible sites to search for microbial life and the characteristic lithologies that life leaves behind. The subterrain may be equally valuable for astrobiology. Where surface conditions are particularly hostile, like on Mars, the subsurface may offer the only habitat for extant lifeforms and access to recognizable biosignatures. We have identified numerous unequivocally biogenic macroscopic, microscopic, and chemical/geochemical cave biosignatures. However, to be especially useful for astrobiology, we are looking for suites of characteristics. Ideally, "biosignature suites" should be both macroscopically and microscopically detectable, independently verifiable by nonmorphological means, and as independent as possible of specific details of life chemistries - demanding (and sometimes conflicting) criteria. Working in fragile, legally protected environments, we developed noninvasive and minimal impact techniques for life and biosignature detection/characterization analogous to Planetary Protection Protocols. Our difficult field conditions have shared limitations common to extraterrestrial robotic and human missions. Thus, the cave/subsurface astrobiology model addresses the most important goals from both scientific and operational points of view. We present details of cave biosignature suites involving manganese and iron oxides, calcite, and sulfur minerals. Suites include morphological fossils, mineral-coated filaments, living microbial mats and preserved biofabrics, 13C and 34S values consistent with microbial metabolism, genetic data, unusual elemental abundances and ratios, and crystallographic mineral forms.

  20. Siderophore-mediated iron dissolution from nontronites is controlled by mineral cristallochemistry

    Directory of Open Access Journals (Sweden)

    Damien eParrello

    2016-03-01

    Full Text Available Bacteria living in oxic environments experience iron deficiency due to limited solubility and slow dissolution kinetics of iron-bearing minerals. To cope with iron deprivation, aerobic bacteria have evolved various strategies, including release of siderophores or other organic acids that scavenge external Fe(III and deliver it to the cells. This research investigated the role of siderophores produced by Pseudomonas aeruginosa in the acquisition of Fe(III from two iron-bearing colloidal nontronites (NAu-1 and NAu-2, comparing differences in bioavailability related with site occupancy and distribution of Fe(III in the two lattices. To avoid both the direct contact of the mineral colloids with the bacterial cells and the uncontrolled particle aggregation, nontronite suspensions were homogenously dispersed in a porous silica gel before the dissolution experiments. A multiparametric approach coupling UV-vis spectroscopy and spectral decomposition algorithm was implemented to monitor simultaneously the solubilisation of Fe and the production of pyoverdine in microplate-based batch experiments. Both nontronites released Fe in a particle concentration-dependent manner when incubated with the wild-type P. aeruginosa strain, however iron released from NAu-2 was substantially greater than from NAu-1. The profile of organic acids produced in both cases was similar and may not account for the difference in the iron dissolution efficiency. In contrast, a pyoverdine-deficient mutant was unable to mobilise Fe(III from either nontronite, whereas iron dissolution occurred in abiotic experiments conducted with purified pyoverdine. Overall, our data provide evidence that P. aeruginosa indirectly mobilise Fe from nontronites primarily through the production of pyoverdine. The structural Fe present on the edges of Nau-2 rather than Nau-1 particles appears to be more bio-accessible, indicating that the distribution of Fe, in the tetrahedron and/or in the octahedron

  1. EFFICIENCY OF REMOVING BIOGENIC COMPOUNDS IN WATER TREATMENT

    Directory of Open Access Journals (Sweden)

    Artur Jachimowski

    2017-08-01

    Full Text Available The aim of the study was to determine the effectiveness of removal of biogenic compounds from water during the treatment process in water treatment plants of Municipal Water Supply and Sewerage Company in Cracow. The selected water quality indicators were analyzed before and after the treatment process in 2007 - 2014. The research was carried out in waters taken from plants that differed in treatment and production. In the analyzed technological systems it was stated that the biggest objections raised the concentration of nitrates, the average content of which is higher in treated water in three plants: Rudawa, Dłubnia and Bielany.

  2. Carbon nanomaterial based electrochemical sensors for biogenic amines

    International Nuclear Information System (INIS)

    Yang, Xiao; He, Xiulan; Li, Fangping; Fei, Junjie; Feng, Bo; Ding, Yonglan

    2013-01-01

    This review describes recent advances in the use of carbon nanomaterials for electroanalytical detection of biogenic amines (BAs). It starts with a short introduction into carbon nanomaterials such as carbon nanotubes, graphene, nanodiamonds, carbon nanofibers, fullerenes, and their composites. Next, electrochemical sensing schemes are discussed for various BAs including dopamine, serotonin, epinephrine, norepinephrine, tyramine, histamine and putrescine. Examples are then given for methods for simultaneous detection of various BAs. Finally, we discuss the current and future challenges of carbon nanomaterial-based electrochemical sensors for BAs. The review contains 175 references. (author)

  3. Pulmonary extraction of biogenic amines during septic shock

    International Nuclear Information System (INIS)

    Kerstein, M.D.; Kohler, J.; Gould, S.; Moseley, P.

    1982-01-01

    The effect of live Escherichia coli on the pulmonary extraction of the biogenic amines 14 C 5-hydroxytryptamine, (5-HT) and 3 H-epinephrine was investigated. The labeled isotopes were injected into a central venous catheter and collected from an aortic catheter. One hundred per cent of the labeled epinephrine was recovered in the control and septic state. Only 32.8 +/- 3.6% SEM of the 5-hydroxytryptamine was recovered before sepsis and 42.5 +/- 4.9% SEM after sepsis. During sepsis, mean arterial pressure fell to 58 mm Hg from 121 mm Hg. Pulmonary shunt increased from .7 +/- .05 SEM to .33 +/- .09 SEM

  4. Size, density and composition of cell-mineral aggregates formed during anoxygenic phototrophic Fe(II) oxidation: Impact on modern and ancient environments

    DEFF Research Database (Denmark)

    Posth, Nicole R.; Huelin, Sonia; Konhauser, Kurt O.

    2010-01-01

    Cell-Fe(III) mineral aggregates produced by anoxygenic Fe(II)-oxidizing photoautotrophic microorganisms (photoferrotrophs) may be influential in the modern Fe cycle and were likely an integral part of ancient biogeochemical cycles on early Earth. While studies have focused on the environmental...... iron phase depended on the composition of the medium: goethite formed in cultures grown by oxidation of dissolved Fe(II) medium in the presence of low phosphate concentrations, while poorly ordered ferrihydrite (or Fe(III) phosphates) formed when amorphous Fe(II) minerals (Fe(II)-phosphates) and high...

  5. Biogenic emissions of isoprenoids and NO in China and comparison to anthropogenic emissions

    International Nuclear Information System (INIS)

    Tie Xuexi; Li Guohui; Ying, Zhuming; Guenther, Alex; Madronich, Sasha

    2006-01-01

    In this study, a regional dynamical model (WRF) is used to drive biogenic emission models to calculate high resolution (10 x 10 km) biogenic emissions of isoprene (C 5 H 8 ), monoterpenes (C 1 H 16 ), and nitric oxide (NO) in China. This high resolution biogenic inventory will be available for the community to study the effect of biogenic emissions on photochemical oxidants in China. The biogenic emissions are compared to anthropogenic emissions to gain insight on the potential impact of the biogenic emissions on tropospheric chemistry, especially ozone production in this region. The results show that the biogenic emissions in China exhibit strongly diurnal, seasonal, and spatial variations. The isoprenoid (including both isoprene and monoterpenes) emissions are closely correlated to tree density and strongly vary with season and local time. During winter (January), the biogenic isoprenoid emissions are the lowest, resulting from lower temperature and solar radiation, and highest in summer (July) due to higher temperature and solar radiation. The biogenic NO emissions are also higher during summer and lower during winter, but the magnitude of the seasonal variation is smaller than the emissions of isoprene and monoterpenes. The biogenic emissions of NO are widely spread out in the northern, eastern, and southern China regions, where high-density agricultural soil lands are located. Both biogenic NO and isoprenoid emissions are very small in western China. The calculated total biogenic emission budget is smaller than the total anthropogenic VOC emission budget in China. The biogenic isoprenoid and anthropogenic VOC emissions are 10.9 and 15.1 Tg year -1 , respectively. The total biogenic and anthropogenic emissions of NO are 5.9 and 11.5 Tg(NO) year -1 , respectively. The study shows that in central eastern China, the estimated biogenic emissions of isoprenoids are very small, and the anthropogenic emissions of VOCs are dominant in this region. However, in

  6. Biogenic emissions of isoprenoids and NO in China and comparison to anthropogenic emissions.

    Science.gov (United States)

    Tie, Xuexi; Li, Guohui; Ying, Zhuming; Guenther, Alex; Madronich, Sasha

    2006-12-01

    In this study, a regional dynamical model (WRF) is used to drive biogenic emission models to calculate high resolution (10x10 km) biogenic emissions of isoprene (C(5)H(8)), monoterpenes (C(10)H(16)), and nitric oxide (NO) in China. This high resolution biogenic inventory will be available for the community to study the effect of biogenic emissions on photochemical oxidants in China. The biogenic emissions are compared to anthropogenic emissions to gain insight on the potential impact of the biogenic emissions on tropospheric chemistry, especially ozone production in this region. The results show that the biogenic emissions in China exhibit strongly diurnal, seasonal, and spatial variations. The isoprenoid (including both isoprene and monoterpenes) emissions are closely correlated to tree density and strongly vary with season and local time. During winter (January), the biogenic isoprenoid emissions are the lowest, resulting from lower temperature and solar radiation, and highest in summer (July) due to higher temperature and solar radiation. The biogenic NO emissions are also higher during summer and lower during winter, but the magnitude of the seasonal variation is smaller than the emissions of isoprene and monoterpenes. The biogenic emissions of NO are widely spread out in the northern, eastern, and southern China regions, where high-density agricultural soil lands are located. Both biogenic NO and isoprenoid emissions are very small in western China. The calculated total biogenic emission budget is smaller than the total anthropogenic VOC emission budget in China. The biogenic isoprenoid and anthropogenic VOC emissions are 10.9 and 15.1 Tg year(-1), respectively. The total biogenic and anthropogenic emissions of NO are 5.9 and 11.5 Tg(NO) year(-1), respectively. The study shows that in central eastern China, the estimated biogenic emissions of isoprenoids are very small, and the anthropogenic emissions of VOCs are dominant in this region. However, in

  7. New Environmentalconditions Responsible for the amount of mg Incorporated in Biogenic Carbonates

    Science.gov (United States)

    Zuddas, P.; Cherchi, A.; DeGiudici, G. B.; Buosi, C.

    2012-12-01

    The composition of carbonate minerals formed in past and present oceans is assumed to be significantly controlled by temperature and seawater composition. Several kinetic laboratory investigations have suggested that the temperature is kinetically responsible for the amount of Mg incorporated in both abiotic and biogenic calcites and that variation of kinetic reaction mechanism resulting from the temperature changes are correlated with the variable amount of Mg incorporated in calcites. These results explain why in present-day marine carbonates low-Mg calcite cements are mainly associated with cool water while high-Mg carbonates are dominantly found in warm-water environments. An apparent inverse relationship between the global average paleo-temperature and the Mg/Ca ratio is however observed in the past formed marine carbonate. This apparent contradiction has been interpreted as resulting from a possible changing in the relative seawater geochemical cycles of these cations. Recent monitoring of costal areas in presence of heavy metals and CO2 released from industrial polluted area reveals the presence of porcelanaceous miliolids infested by microscopic boring microflora (cyanobacteria, algae and fungi). Here, benthonic foraminifera have Mg/Ca molar ratio by one order of magnitude higher when compared to the average value of the same genus living under uncontaminated environments. A similar behaviour has been found for Zn, Cd and Pb. In these contaminated environments, temperature and average major seawater composition remain constant, while PCO2 partial pressure (estimated by pH and alkalinity using the ion pairing model) is 3-5 times higher than the average for the open sea nearby. Geochemical models predicts that CO2 increase is affecting carbonate saturation state of surface water in the twenty-first century indicating that calcareous organisms may have difficulty calcifying leading to production of weaker skeletons and greater vulnerability to erosion. The

  8. Comparative study of biogenic and abiotic iron-containing materials

    Energy Technology Data Exchange (ETDEWEB)

    Cherkezova-Zheleva, Z., E-mail: zzhel@ic.bas.bg; Shopska, M., E-mail: shopska@ic.bas.bg; Paneva, D. [Bulgarian Academy of Sciences, Institute of Catalysis (Bulgaria); Kovacheva, D. [Bulgarian Academy of Sciences, Institute of General and Inorganic Chemistry (Bulgaria); Kadinov, G.; Mitov, I. [Bulgarian Academy of Sciences, Institute of Catalysis (Bulgaria)

    2016-12-15

    Series of iron-based biogenic materials prepared by cultivation of Leptothrix group of bacteria in different feeding media (Sphaerotilus-Leptothrix group of bacteria isolation medium, Adler, Lieske and silicon-iron-glucose-peptone) were studied. Control samples were obtained in the same conditions and procedures but the nutrition media were not infected with bacteria, i.e. they were sterile. Room and low temperature Mössbauer spectroscopy, powder X-ray diffraction (XRD), and infrared spectroscopy (IRS) were used to reveal the composition and physicochemical properties of biomass and respective control samples. Comparative analysis showed differences in their composition and dispersity of present phases. Sample composition included different ratio of nanodimensional iron oxyhydroxide and oxide phases. Relaxation phenomena such as superparamagnetism or collective magnetic excitation behaviour were registered for some of them. The experimental data showed that the biogenic materials were enriched in oxyhydroxides of high dispersion. Catalytic behaviour of a selected biomass and abiotic material were studied in the reaction of CO oxidation. In situ diffuse-reflectance (DR) IRS was used to monitor the phase transformations in the biomass and CO conversion.

  9. Technological factors affecting biogenic amine content in foods: a review

    Directory of Open Access Journals (Sweden)

    Fausto Gardini

    2016-08-01

    Full Text Available Biogenic amines (BAs are molecules which can be present in foods and, due to their toxicity, can cause adverse effects on the consumers. BAs are generally produced by microbial decarboxylation of amino acids in food products. The most significant BAs occurring in foods are histamine, tyramine, putrescine, cadaverine, tryptamine, 2-phenylethylamine, spermine, spermidine and agmatine. The importance of preventing the excessive accumulation of BAs in food is related to their impact on human health and food quality. Quality criteria in connection with the presence of BAs in food and food products are necessary from a toxicological point of view. This is particularly important in fermented foods in which the massive microbial proliferation required for obtaining specific products is often relater with BA accumulation. In this review, up-to-date information and recent discoveries about technological factors affecting biogenic amine content in foods are reviewed. Specifically, BA forming-microorganism and decarboxylation activity, genetic and metabolic organization of decarboxylases, risk associated to BAs (histamine, tyramine toxicity and other BAs, environmental factors influencing BA formation (temperature, salt concentration, pH. In addition, the technological factors for controlling BA production (use of starter culture, technological additives, effects of packaging, other non-thermal treatments, metabolising BA by microorganisms, effects of pressure treatments on BA formation and antimicrobial substances are addressed.

  10. Biogenic magnetite as a primary remanence carrier in limestone deposits

    Science.gov (United States)

    Chang, Shih-Bin R.; Kirschvink, Joseph L.; Stolz, John F.

    1987-06-01

    Studies on the microbial communities and magnetic phases of samples collected from carbonate oozes at Sugarloaf Key, FL, U.S.A. and calcareous laminated sediments from Laguna Figueroa, Baja California, Mexico have revealed the existence of magnetotactic bacteria and ultrafine-grained single domain magnetite in both environments. Magnetotactic bacteria were identified by light and electron microscopy. The single domain magnetite was detected by coercivity spectra analysis with a SQUID magnetometer and examined under the transmission electron microscope. The similarity, in terms of size and shape, between the single domain magnetite found in these sediments and the magnetite observed in the bacterial magnetosome from enriched cultures indicates the ultrafine-grained magnetite in these two marine environments was biologically formed. These results, combined with the common occurrences of ultrafine-grained magnetite in limestone deposits detected rock magnetically, suggest biogenic magnetite may be present and contribute to the magnetic remanence in these rocks. Several Cambrian limestone samples, separately collected from Siberia, China, and Kazakhstan, were examined for the presence of bacterial magnetite. Samples from the Lower Cambrian Sinskian Formation at Siberia Platform were found to contain both a large amount of apparently bacterial magnetite particles and a very stable primary magnetic component. Post-Cambrian diagenesis does not seem to affect the microgranulometry of these apparently bacterial magnetite crystals or the magnetic remanence carried by them. Assessing the potential role of biogenic magnetite as a primary remanence carrier in other Phanerozoic limestone deposits ought to be further pursued.

  11. Estimating the Biogenic Non-Methane Hydrocarbon Emissions over Greece

    Directory of Open Access Journals (Sweden)

    Ermioni Dimitropoulou

    2018-01-01

    Full Text Available Biogenic emissions affect the urban air quality as they are ozone and secondary organic aerosol (SOA precursors and should be taken into account when applying photochemical pollution models. The present study presents an estimation of the magnitude of non-methane volatile organic compounds (BNMVOCs emitted by vegetation over Greece. The methodology is based on computation developed with the aid of a Geographic Information System (GIS and theoretical equations in order to produce an emission inventory on a 6 × 6 km2 spatial resolution, in a temporal resolution of 1 h covering one year (2016. For this purpose, a variety of input data was used: updated satellite land-use data, land-use specific emission potentials, foliar biomass densities, temperature, and solar radiation data. Hourly, daily, and annual isoprene, monoterpenes, and other volatile organic compounds (OVOCs were estimated. In the area under study, the annual biogenic emissions were estimated up to 472 kt, consisting of 46.6% isoprene, 28% monoterpenes, and 25.4% OVOCs. Results delineate an annual cycle with increasing values from March to April, while maximum emissions were observed from May to September, followed by a decrease from October to January.

  12. Antimicrobial textiles: Biogenic silver nanoparticles against Candida and Xanthomonas.

    Science.gov (United States)

    Ballottin, Daniela; Fulaz, Stephanie; Cabrini, Flávia; Tsukamoto, Junko; Durán, Nelson; Alves, Oswaldo L; Tasic, Ljubica

    2017-06-01

    This paper introduces cotton fibers impregnated with biogenic silver nanoparticles (AgNPs), synthesized from a Fusarium oxysporum fungal filtrate (FF) solution, and open up the possibility for their use in medical environment and agriculture clothing as means to avoid microbial spreading. After thorough AgNPs characterization, regarding their physical, chemical and biochemical properties, Minimum Inhibitory Concentrations (MIC) against some human and orange tree pathogens were determined. We report the strong AgNPs activity against Candida parapsilosis and Xanthomonas axonopodis pv. citri (Xac) that was morphologically characterized, pointing to strong AgNPs effects on microorganisms' membranes. Cotton fibers were then impregnated with AgNPs suspension and these maintained strong antimicrobial activity even after repeated mechanical washing cycles (up to 10). Reported data might point to an application for biogenic AgNPs as potent agrochemicals, as well as, to their application in textiles for antiseptic clothing for medical and agronomic applications. Copyright © 2017 Elsevier B.V. All rights reserved.

  13. Biogenic Carbon Fraction of Biogas and Natural Gas Fuel Mixtures Determined with 14C

    NARCIS (Netherlands)

    Palstra, Sanne W. L.; Meijer, Harro A. J.

    2014-01-01

    This study investigates the accuracy of the radiocarbon-based calculation of the biogenic carbon fraction for different biogas and biofossil gas mixtures. The focus is on the uncertainty in the C-14 reference values for 100% biogenic carbon and on the C-13-based isotope fractionation correction of

  14. 77 FR 21772 - Notification of Two Public Teleconferences of the Science Advisory Board Biogenic Carbon...

    Science.gov (United States)

    2012-04-11

    ... of Air and Radiation requested SAB review of EPA's draft accounting framework. As noticed in 76 FR... review and discuss its advice on EPA's draft Accounting Framework for Biogenic CO2 Emissions from... Accounting Framework for Biogenic CO2 Emissions from Stationary Sources (September 2011). DATES: The public...

  15. DEVELOPMENT OF SEASONAL AND ANNUAL BIOGENIC EMISSIONS INVENTORIES FOR THE U.S. AND CANADA

    Science.gov (United States)

    The report describes the development of a biogenic emissions inventory for the U.S. and Canada, to assess the role of biogenic emissions in ozone formation. Emission inventories were developed at hourly and grid (1/4 x 116 degree) level from input data at the same scales. Emissio...

  16. Estimation of biogenic volatile organic compounds emissions in subtropical island--Taiwan.

    Science.gov (United States)

    Chang, Ken-Hui; Chen, Tu-Fu; Huang, Ho-Chun

    2005-06-15

    Elevated tropospheric ozone is harmful to human health and plants. It is formed through the photochemical reactions involving volatile organic compounds (VOCs) and nitrogen oxides (NO(x)). The elevated ozone episodes occur mainly in summer months in the United States, while the high-ozone episodes frequently occur during the fall in Taiwan. The unique landscape of Taiwan produces tremendous amounts of biogenic VOCs in the mountain regions that are adjacent to concentrated urban areas. The urban areas, in turn, generate prodigious amounts of anthropogenic emissions. Biogenic VOC emissions have direct influence on tropospheric ozone formation. To explore the air quality problems in Taiwan, this study attempts to develop a biogenic VOC emission model suitable for air quality applications in Taiwan. The emission model is based on the Biogenic Emissions Inventory System Version 2 and coupled with a detailed Taiwan land use database. The 1999 total Taiwan biogenic VOC emissions were estimated at 214,000 metric tons. The emissions of isoprene, monoterpenes, and other VOCs were about 37.2%, 30.4%, and 32.4% of total biogenic VOC emissions, respectively. The annual total biogenic VOC emission per unit area was more than two times the value of that in any European country, implying that detailed emissions estimates in any size of region will benefit the global biogenic emission inventories.

  17. Biogenic silica in space and time in sediments of Central Indian Ocean

    Digital Repository Service at National Institute of Oceanography (India)

    Pattan, J.N.; Gupta, S.M.; Mudholkar, A.V.; Parthiban, G.

    rate averages 2.25 x 10/5 g.cm/2.y/1 and it is contributed from 33 to 50% of the total silica. Higher biogenic silica content of the surface sediment is well correlated with Mn, Cu and Ni concentration of the overlying manganese nodules. Higher biogenic...

  18. Constraining biogenic silica dissolution in marine sediments: a comparison between diagenetic models and experimental dissolution rates

    NARCIS (Netherlands)

    Khalil, K.; Rabouille, C.; Gallinari, M.; Soetaert, K.E.R.; DeMaster, D.J.; Ragueneau, O.

    2007-01-01

    The processes controlling preservation and recycling of particulate biogenic silica in sediments must be understood in order to calculate oceanic silica mass balances. The new contribution of this work is the coupled use of advanced models including reprecipitation and different phases of biogenic

  19. Potential function of added minerals as nucleation sites and effect of humic substances on mineral formation by the nitrate-reducing Fe(II)-oxidizer Acidovorax sp. BoFeN1.

    Science.gov (United States)

    Dippon, Urs; Pantke, Claudia; Porsch, Katharina; Larese-Casanova, Phil; Kappler, Andreas

    2012-06-19

    The mobility of toxic metals and the transformation of organic pollutants in the environment are influenced and in many cases even controlled by iron minerals. Therefore knowing the factors influencing iron mineral formation and transformation by Fe(II)-oxidizing and Fe(III)-reducing bacteria is crucial for understanding the fate of contaminants and for the development of remediation technologies. In this study we followed mineral formation by the nitrate-reducing Fe(II)-oxidizing strain Acidovorax sp. BoFeN1 in the presence of the crystalline Fe(III) (oxyhydr)oxides goethite, magnetite and hematite added as potential nucleation sites. Mössbauer spectroscopy analysis of minerals precipitated by BoFeN1 in (57)Fe(II)-spiked microbial growth medium showed that goethite was formed in the absence of mineral additions as well as in the presence of goethite or hematite. The presence of magnetite minerals during Fe(II) oxidation induced the formation of magnetite in addition to goethite, while the addition of humic substances along with magnetite also led to goethite but no magnetite. This study showed that mineral formation not only depends on the aqueous geochemical conditions but can also be affected by the presence of mineral nucleation sites that initiate precipitation of the same underlying mineral phases.

  20. Petrophilic, Fe(III Reducing Exoelectrogen Citrobacter sp. KVM11, Isolated From Hydrocarbon Fed Microbial Electrochemical Remediation Systems

    Directory of Open Access Journals (Sweden)

    Krishnaveni Venkidusamy

    2018-03-01

    Full Text Available Exoelectrogenic biofilms capable of extracellular electron transfer are important in advanced technologies such as those used in microbial electrochemical remediation systems (MERS Few bacterial strains have been, nevertheless, obtained from MERS exoelectrogenic biofilms and characterized for bioremediation potential. Here we report the identification of one such bacterial strain, Citrobacter sp. KVM11, a petrophilic, iron reducing bacterial strain isolated from hydrocarbon fed MERS, producing anodic currents in microbial electrochemical systems. Fe(III reduction of 90.01 ± 0.43% was observed during 5 weeks of incubation with Fe(III supplemented liquid cultures. Biodegradation screening assays showed that the hydrocarbon degradation had been carried out by metabolically active cells accompanied by growth. The characteristic feature of diazo dye decolorization was used as a simple criterion for evaluating the electrochemical activity in the candidate microbe. The electrochemical activities of the strain KVM11 were characterized in a single chamber fuel cell and three electrode electrochemical cells. The inoculation of strain KVM11 amended with acetate and citrate as the sole carbon and energy sources has resulted in an increase in anodic currents (maximum current density of 212 ± 3 and 359 ± mA/m2 with respective coulombic efficiencies of 19.5 and 34.9% in a single chamber fuel cells. Cyclic voltammetry studies showed that anaerobically grown cells of strain KVM11 are electrochemically active whereas aerobically grown cells lacked the electrochemical activity. Electrobioremediation potential of the strain KVM11 was investigated in hydrocarbonoclastic and dye detoxification conditions using MERS. About 89.60% of 400 mg l-1 azo dye was removed during the first 24 h of operation and it reached below detection limits by the end of the batch operation (60 h. Current generation and biodegradation capabilities of strain KVM11 were examined using an

  1. Influence of Oxygen and Nitrate on Fe (Hydr)oxide Mineral Transformation and Soil Microbial Communities during Redox Cycling.

    Science.gov (United States)

    Mejia, Jacqueline; Roden, Eric E; Ginder-Vogel, Matthew

    2016-04-05

    Oscillations between reducing and oxidizing conditions are observed at the interface of anaerobic/oxic and anaerobic/anoxic environments, and are often stimulated by an alternating flux of electron donors (e.g., organic carbon) and electron acceptors (e.g., O2 and NO3(-)). In iron (Fe) rich soils and sediments, these oscillations may stimulate the growth of both Fe-reducing bacteria (FeRB) and Fe-oxidizing bacteria (FeOB), and their metabolism may induce cycling between Fe(II) and Fe(III), promoting the transformation of Fe (hydr)oxide minerals. Here, we examine the mineralogical evolution of lepidocrocite and ferrihydrite, and the adaptation of a natural microbial community to alternating Fe-reducing (anaerobic with addition of glucose) and Fe-oxidizing (with addition of nitrate or air) conditions. The growth of FeRB (e.g., Geobacter) is stimulated under anaerobic conditions in the presence of glucose. However, the abundance of these organisms depends on the availability of Fe(III) (hydr)oxides. Redox cycling with nitrate results in decreased Fe(II) oxidation thereby decreasing the availability of Fe(III) for FeRB. Additionally, magnetite is detected as the main product of both lepidocrocite and ferrihydrite reduction. In contrast, introduction of air results in increased Fe(II) oxidation, increasing the availability of Fe(III) and the abundance of Geobacter. In the lepidocrocite reactors, Fe(II) oxidation by dissolved O2 promotes the formation of ferrihydrite and lepidocrocite, whereas in the ferrihydrite reactors we observe a decrease in magnetite stoichiometry (e.g., oxidation). Understanding Fe (hydr)oxide transformation under environmentally relevant redox cycling conditions provides insight into nutrient availability and transport, contaminant mobility, and microbial metabolism in soils and sediments.

  2. Picoplankton contribution to biogenic silica stocks and production rates in the Sargasso Sea

    Science.gov (United States)

    Krause, J. W.; Brzezinski, M. A.; Baines, S. B.; Collier, J.; Ohnemus, D.; Twining, B. S.

    2016-02-01

    The picoplankton size class (total biogenic silica (>0.4 µm) standing stock and to its rate of production in the Sargasso Sea. These trends were robust after correcting biogenic silica, and the calculated rates which use these data, for interference by lithogenic silica. The 100-m total integrated biogenic silica concentration was low and ranged from 0.7 - 5.0 mmol Si m-2, with the highest value within a mesoscale eddy. Material within the picoplankton size fraction was present at every low-biomass station and provided a relatively consistent contribution to total biogenic silica (10 - 24%, average 14%). The integrated rates of total biogenic silica production were reflective of the low biomass: 0.2 - 1.8 mmol Si m-2 d-1 in non-eddy stations and 6.0 mmol Si m-2 d-1 within the eddy. The average proportion of biogenic silica production in the picoplankton was 16% (range 3 - 38%), with a lower value within the eddy. Outside the eddy, the biomass-normalized rates of silica production were similar for each size class, 0.6 d-1. Using Synechococcus abundance data in the upper 30 m and assuming this group was the only contributor to the picoplankton biogenic silica, we calculate an average Si quota of 229 amol Si cell-1; this is two-fold higher than reported previously by direct measurement on cells using x-ray fluorescence. In the eddy, the estimated Synechococcus Si-quotas were up to 50-fold higher than estimated at other stations, suggesting that most of the pico-sized biogenic silica in this feature may have been diatom fragments. This interpretation is also supported by the eddy having the lowest biomass-normalized production rates for the picoplankton. Our results suggest picoplankton may have a small, but relatively stable, contribution to biogenic silica in this region, which underlies a more dynamic microplankton biogenic silica pool driven by diatoms.

  3. 76 FR 61100 - Notification of a Public Meeting of the Science Advisory Board Biogenic Carbon Emissions Panel

    Science.gov (United States)

    2011-10-03

    ... Advisory Board Biogenic Carbon Emissions Panel AGENCY: Environmental Protection Agency (EPA). ACTION... Office announces a public face-to-face meeting of the SAB Biogenic Carbon Emissions Panel to review EPA's draft Accounting Framework for Biogenic CO 2 Emissions from Stationary Sources (September 2011). DATES...

  4. Preparation and characterisation of mixed ligand complexes of Co(III), Fe(III) and Cr(III) containing phthalimide and phenols

    International Nuclear Information System (INIS)

    Miah, M.A.J.; Islam, M.S.; Pal, S.C.; Barma, T.K.

    1996-01-01

    Some novel mixed ligand complexes of Co(III), Fe(III) and Cr(III) containing phthalimide as primary and 2-aminophenol and 3-aminophenol as secondary ligands have been synthesized and characterised on the basis of elemental analyses, conductivity and magnetic measurements and infrared and electronic spectral studies. Complexes containing 2-aminophenol are 1:1 electrolyte in N,N dimethylformamide. Spectral studies indicate that all the complexes exhibit octahedral geometry. The complexes have the general composition; K[M(pim)/sub 2/(L)/sub 2/]; where m=Co(III), Fe(III) and Cr(III), pim-anion of phthalimamide and L=anion of 2-aminophenol and 3-aminophenol. (author)

  5. An in situ spectroelectrochemical study on the orientation changes of an [FeiiiLN2O3] metallosurfactant deposited as LB Films on gold electrode surfaces.

    Science.gov (United States)

    Brand, Izabella; Juhaniewicz-Debinska, Joanna; Wickramasinghe, Lanka; Verani, Claudio N

    2018-03-28

    In this paper we analyze the changes in molecular orientation triggered by electrochemical reduction of an iron-containing surfactant in Langmuir-Blodgett films deposited onto gold electrodes. The metallosurfactant [Feiii(LN2O3)] (1) is an established molecular rectifier capable of unidirectional electron transfer between two electrodes. A gradual decrease in the activity is observed in sequential current vs. potential curves upon repeated cycles. Here we evaluate the redox response associated with the reduction of the Feiii/Feii couple in a single monolayer, as well as in a 5-layer LB film of 1. We use polarization modulation infrared reflection absorption spectroscopy (PM IRRAS) to follow structural and orientation changes associated with such applied potential scans. We observe that the reduction of the Fe center becomes increasingly irreversible because an Fe-Ophenolate bond is cleaved. This transformation is accompanied by an almost vertical change in the orientation of metallosurfactant molecules in LB films.

  6. Simultaneous Spectrophotometric Determination of FeII and FeIII in Pharmaceuticals by Partial Least Squares with Chromogenic Mixed Reagents

    OpenAIRE

    Niazi, Ali

    2006-01-01

    Simultaneous determination of FeII and FeIII mixtures by spectrophotometric methods is a difficult problem in analytical chemistry because of spectral interferences. By multivariate calibration methods, such as partial least squares (PLS), it is possible to obtain a model adjusted to the concentration values of the mixtures used in the calibration range. The method is based on developing the reaction between the analytes and 1,10 phenanthroline and 5-sulfosalicylic acid as the chromogenic rea...

  7. On-line solid-phase extraction and multisyringe flow injection analysis of Al(III) and Fe(III) in drinking water

    Energy Technology Data Exchange (ETDEWEB)

    Vanloot, Pierre; Boudenne, Jean-Luc; Coulomb, Bruno [Universite de Provence - Case 29, Laboratoire de Chimie et Environnement (FRE 2704), Marseille cedex 3 (France); Branger, Catherine; Margaillan, Andre [ISITV - Universite du Sud Toulon Var, Laboratoire de Chimie Appliquee MFS (EA 1356), La Garde du Var (France); Brach-Papa, Christophe [European Commission, Joint Research Centre, Institute for Reference Materials and Measurements, Isotope Measurements Unit, Geel (Belgium)

    2007-11-15

    A new analytical method was developed for on-line monitoring of residual coagulants (aluminium and iron salts) in potable water. The determination was based on a sequential procedure coupling an extraction/enrichment step of the analytes onto a modified resin and a spectrophotometric measurement of a surfactant-sensitized binary complex formed between eluted analytes and Chrome Azurol S. The optimization of the solid phase extraction was performed using factorial design and a Doehlert matrix considering six variables: sample percolation rate, sample metal concentration, flow-through sample volume (all three directly linked to the extraction step), elution flow rate, concentration and volume of eluent (all three directly linked to the elution step). A specific reagent was elaborated for sensitive and specific spectrophotometric determination of Al(III) and Fe(III), by optimizing surfactant and ligand concentrations and buffer composition. The whole procedure was automated by a multisyringe flow injection analysis (MSFIA) system. Detection limits of 4.9 and 5.6 {mu}g L{sup -1} were obtained for Al(III) and Fe(III) determination, respectively, and the linear calibration graph up to 300 {mu}g L{sup -1} (both for Al(III) and Fe(III)) was well adapted to the monitoring of drinking water quality. The system was successfully applied to the on-site determination of Al(III) and Fe(III) at the outlet of two water treatment units during two periods of the year (winter and summer conditions). (orig.)

  8. IR, UV-Vis, magnetic and thermal characterization of chelates of some catecholamines and 4-aminoantipyrine with Fe(III) and Cu(II)

    Science.gov (United States)

    Mohamed, Gehad G.; Zayed, M. A.; El-Dien, F. A. Nour; El-Nahas, Reham G.

    2004-07-01

    The dopamine derivatives participate in the regulation of wide variety of physiological functions in the human body and in medication life. Increase and/or decrease in the concentration of dopamine in human body reflect an indication for diseases such as Schizophrenia and/or Parkinson diseases. α-Methyldopa (α-MD) in tablets is used in medication of hypertension. The Fe(III) and Cu(II) chelates with coupled products of adrenaline hydrogen tartarate (AHT), levodopa (LD), α-MD and carbidopa (CD) with 4-aminoantipyrine (4-AAP) are prepared and characterized. Different physico-chemical methods like IR, magnetic and UV-Vis spectra are used to investigate the structure of these chelates. Fe(III) form 1:2 (M:catecholamines) chelates while Cu(II) form 1:1 chelates. Catecholamines behave as a bidentate mono- or dibasic ligands in binding to the metal ions. IR spectra show that the catecholamines are coordinated to the metal ions in a bidentate manner with O,O donor sites of the phenolic - OH. Magnetic moment measurements reveal the presence of Fe(III) chelates in octahedral geometry while the Cu(II) chelates are square planar. The thermal decomposition of Fe(III) and Cu(II) complexes is studied using thermogravimetric (TGA) and differential thermal analysis (DTA) techniques. The water molecules are removed in the first step followed immediately by decomposition of the ligand molecules. The activation thermodynamic parameters, such as, energy of activation, enthalpy, entropy and free energy change of the complexes are evaluated and the relative thermal stability of the complexes are discussed.

  9. Harvesting visible light with MoO3nanorods modified by Fe(iii) nanoclusters for effective photocatalytic degradation of organic pollutants.

    Science.gov (United States)

    Alam, U; Kumar, S; Bahnemann, D; Koch, J; Tegenkamp, C; Muneer, M

    2018-02-07

    The photocatalytic performance of MoO 3 is limited due to its weak visible light absorption ability and quick recombination of charge carriers. In the present work, we report the facile synthesis of Fe(iii)-grafted MoO 3 nanorods using a hydrothermal method followed by an impregnation technique with the aim of enhancing the light harvesting ability and photocatalytic efficiency of MoO 3 . The prepared samples were characterized through the standard analytical techniques of XRD, SEM-EDS, TEM, XPS, UV-Vis-DRS, FT-IR, TG-DTA and PL spectrophotometry. XPS and TEM analyses reveal that Fe(iii) ions are successfully grafted onto the surface of the MoO 3 nanorod with intimate interfacial contact. The photocatalytic performances of the prepared samples were investigated by studying the degradation of methylene blue (MB), rhodamine B (RhB) and 4-nitrophenol (4-NP) under visible light irradiation. The surface-modified MoO 3 with Fe(iii) ions showed excellent photocatalytic activity towards the degradation of the above-mentioned pollutants, where Fe(iii) ions act as effective cocatalytic sites to produce hydroxyl radicals through multi-electron reduction of oxygen molecules. The improved photocatalytic activity could be ascribed to the effective separation of charge carriers and efficient production of hydroxyl radicals via the rapid capture of electrons by Fe(iii) through a well-known photoinduced interfacial charge transfer mechanism. Based on scavenger analysis study, a mechanism for the enhanced photocatalytic activity has been discussed and proposed. The concept of surface grafting onto large bandgap semiconductors with ubiquitous elements opens up a new avenue for the development of visible-light-responsive photocatalysts with excellent photocatalytic activity.

  10. Chalcedony (a crystalline variety of silica): biogenic origin in electric organs from living Psammobatis extenta (family Rajidae).

    Science.gov (United States)

    Prado Figueroa, María; Barrera, Facundo; Cesaretti, Nora N

    2008-10-01

    The electric organs of electric fish have been used extensively for the study of peripheral cholinergic synapses. Aluminum and silicon have been observed in the electrocytes of Psammobatis extenta, a fish belonging to the family Rajidae, using a combination of scanning electron microscopy and X-ray spectrometry. Based on this evidence, the presence of silica minerals has been documented by means of mineralogical techniques. Electric organ cryostat sections and subcellular fractions were observed using a Leica DMLP mineralogical microscope. The shape, size and color, among other properties, were analyzed in plane-polarized light, while birefringence and the extinction angle, which allow for mineral identification, were observed through crossed-polarized illumination. The distribution of chalcedony, an oxide silicon mineral, in the sections and all the fractions of the electric organ was recorded. X-ray diffraction analysis of the electric organ segments showed a similar result, with a low-quartz variety. Chalcedony precipitation occurred at a specific pH (7-8) and oxidation potential (Eh; 0.0 to -0.2). This observation supports the important role played by pH and Eh conditions in silica precipitation in electrocytes, as has been reported in geological environments. It is possible that silica formation and silica degradation in electric organs are also related to the enzymes, silicatein and silicase, that direct the polymerization and depolymerization of amorphous silica in sponges. Carbonic anhydrases (silicase) are involved in physiological pH regulation. Crystallization of chalcedony via spiral growth from a partially polymerized fluid is consistent with processes known to occur in organic systems. This is the first time that a biogenically produced crystalline mineral phase (i.e., chalcedony) has been observed in the electrocytes and cholinergic nerves from living electric fish.

  11. Crystal structure of the coordination polymer [FeIII2{PtII(CN4}3

    Directory of Open Access Journals (Sweden)

    Maksym Seredyuk

    2015-01-01

    Full Text Available The title complex, poly[dodeca-μ-cyanido-diiron(IIItriplatinum(II], [FeIII2{PtII(CN4}3], has a three-dimensional polymeric structure. It is built-up from square-planar [PtII(CN4]2− anions (point group symmetry 2/m bridging cationic [FeIIIPtII(CN4]+∞ layers extending in the bc plane. The FeII atoms of the layers are located on inversion centres and exhibit an octahedral coordination sphere defined by six N atoms of cyanide ligands, while the PtII atoms are located on twofold rotation axes and are surrounded by four C atoms of the cyanide ligands in a square-planar coordination. The geometrical preferences of the two cations for octahedral and square-planar coordination, respectively, lead to a corrugated organisation of the layers. The distance between neighbouring [FeIIIPtII(CN4]+∞ layers corresponds to the length a/2 = 8.0070 (3 Å, and the separation between two neighbouring PtII atoms of the bridging [PtII(CN4]2− groups corresponds to the length of the c axis [7.5720 (2 Å]. The structure is porous with accessible voids of 390 Å3 per unit cell.

  12. Turn-on fluorogenic and chromogenic detection of Fe(III) and its application in living cell imaging

    International Nuclear Information System (INIS)

    Sivaraman, Gandhi; Sathiyaraja, Vijayaraj; Chellappa, Duraisamy

    2014-01-01

    Two rhodamine-based sensors RDI-1, RDI-2 was designed and synthesized by incorporation of the rhodamine 6G fluorophore and 2-formyl imidazole as the recognizing unit via the imine linkages. RDI-1, RDI-2 exhibits very high selectivity and an excellent sensitivity towards Fe(III) ions in aqueous buffer solution on compared with other probes. The color change from colorless to pink and turn-on fluorescence after binding with iron (III) was observed. Based on jobs plot and ESI-MS studies, the 1:1 binding mode was proposed. Live cell imaging experiments with each probe showed that these probes widely applicable to detect Fe 3+ in living cells. -- Highlights: • Two rhodamine based probes was synthesized and used to recognize iron (III). • The chemosensors can be applied to detect iron(III) ions by color and turn-on fluorescent changes. • The very low detection limit was reported. • The applicability of these probes for live cell fluorescence imaging was studied

  13. Turn-on fluorogenic and chromogenic detection of Fe(III) and its application in living cell imaging

    Energy Technology Data Exchange (ETDEWEB)

    Sivaraman, Gandhi; Sathiyaraja, Vijayaraj; Chellappa, Duraisamy, E-mail: dcmku123@gmail.com

    2014-01-15

    Two rhodamine-based sensors RDI-1, RDI-2 was designed and synthesized by incorporation of the rhodamine 6G fluorophore and 2-formyl imidazole as the recognizing unit via the imine linkages. RDI-1, RDI-2 exhibits very high selectivity and an excellent sensitivity towards Fe(III) ions in aqueous buffer solution on compared with other probes. The color change from colorless to pink and turn-on fluorescence after binding with iron (III) was observed. Based on jobs plot and ESI-MS studies, the 1:1 binding mode was proposed. Live cell imaging experiments with each probe showed that these probes widely applicable to detect Fe{sup 3+} in living cells. -- Highlights: • Two rhodamine based probes was synthesized and used to recognize iron (III). • The chemosensors can be applied to detect iron(III) ions by color and turn-on fluorescent changes. • The very low detection limit was reported. • The applicability of these probes for live cell fluorescence imaging was studied.

  14. Molecular structure and biological studies on Cr(III), Mn(II) and Fe(III) complexes of heterocyclic carbohydrazone ligand

    Science.gov (United States)

    Abu El-Reash, G. M.; El-Gammal, O. A.; Radwan, A. H.

    2014-03-01

    The chelating behavior of the ligand (H2APC) based on carbohydrazone core modified with pyridine end towards Cr(III), Mn(II) and Fe(III) ions have been examined. The 1H NMR and IR data for H2APC revealed the presence of two stereoisomers syn and anti in both solid state and in solution in addition to the tautomeric versatility based on the flexible nature of the hydrazone linkage leading to varied coordination modes. The spectroscopic data confirmed that the ligand behaves as a monobasic tridentate in Cr(III) and Fe(III) complexes and as neutral tetradentate in Mn(II) complex. The electronic spectra as well as the magnetic measurements confirmed the octahedral geometry for all complexes. The bond length and angles were evaluated by DFT method using material studio program for all complexes. The thermal behavior and the kinetic parameters of degradation were determined using Coats-Redfern and Horowitz-Metzger methods. The antioxidant (DDPH and ABTS methods), anti-hemolytic and cytotoxic activities of the compounds have been screened. Cr(III) complex and H2APC showed the highest antioxidant activity using ABTS and DPPH methods. With respect to in vitro Ehrlich ascites assay, H2APC exhibited the potent activity followed by Fe(III) and Cr(III)complexes.

  15. Fe(III) homogeneous photocatalysis for the removal of 1,2-dichlorobenzene in aqueous solution by means UV lamp and solar light.

    Science.gov (United States)

    Andreozzi, Roberto; Canterino, Marisa; Marotta, Raffaele

    2006-12-01

    Chlorinated hydrocarbons are widely used in chemical industries as solvents and intermediates for pesticides and dyes manufacture. Their presence was documented in rivers, groundwaters and seawaters. In this work, the oxidation of 1,2-dichlorobenzene in aqueous solutions by means of Fe(III) homogeneous photocatalysis under UV lamp and sunlight irradiations is studied. The results show that the best working conditions are found for pH=3.0 and initial [Fe(III)] concentration equal to 1.0x10(-4) molL(-1) although the investigated system can be utilized even at pH close to 4.0 but with slower abatement kinetics. Some dicholoroderivatives, such as 2,3-dichlorophenol, 3,4-dichlorophenol and 2-chlorophenol, are identified as oxidation intermediates. The values of the kinetic constant for the photochemical reoxidation of Fe(II) to Fe(III) are evaluated by a mathematical model in the range 1.58-3.78 Lmol(-1)s(-1) and 0.69-0.78 Lmol(-1)s(-1) for the systems irradiated by UV lamp and sunlight, respectively.

  16. The Role of Coulomb Interactions for Spin Crossover Behaviors and Crystal Structural Transformation in Novel Anionic Fe(III Complexes from a π-Extended ONO Ligand

    Directory of Open Access Journals (Sweden)

    Suguru Murata

    2016-05-01

    Full Text Available To investigate the π-extension effect on an unusual negative-charged spin crossover (SCO FeIII complex with a weak N2O4 first coordination sphere, we designed and synthesized a series of anionic FeIII complexes from a π-extended naphthalene derivative ligand. Acetonitrile-solvate tetramethylammonium (TMA salt 1 exhibited an SCO conversion, while acetone-solvate TMA salt 2 was in a high-spin state. The crystal structural analysis for 2 revealed that two-leg ladder-like cation-anion arrays derived from π-stacking interactions between π-ligands of the FeIII complex anion and Coulomb interactions were found and the solvated acetone molecules were in one-dimensional channels between the cation-anion arrays. A desolvation-induced single-crystal-to-single-crystal transformation to desolvate compound 2’ may be driven by Coulomb energy gain. Furthermore, the structural comparison between quasi-polymorphic compounds 1 and 2 revealed that the synergy between Coulomb and π-stacking interactions induces a significant distortion of coordination structure of 2.

  17. Biogenic iron oxide transformation by hyperthermophiles: spectral and physiological potentials

    Science.gov (United States)

    Kashyap, S.; Sklute, E.; Dyar, M. D.; Holden, J. F.

    2017-12-01

    It is likely that any putative life in our Solar System beyond Earth, extinct or extant, is microbial. However, to detect such life, distinct organic or mineral biosignatures need to be established. Microbe-mineral interactions and mineral transformations deserve further examination in this regard. This study focused on hyperthermophilic iron oxide-reducing archaea and addressed the types of iron-oxide minerals that are favored for growth, the kinetics of such reactions, and the mineral transformations that occur depending upon the electron acceptor. Two hyperthermophilic archaea (Pyrodictium delaneyi and Pyrobaculum islandicum) and six laboratory-synthesized nanophase iron oxide minerals (2-line ferrihydrite, lepidocrocite, akaganéite, goethite, hematite and maghemite) were tested for cell growth and Fe(II) production. The mineral end-products were further characterized by examining the spectral signatures associated with these transformations using reflectance, Raman, and Mössbauer spectroscopies and electron diffraction patterns. Additionally, we critically examined how sample preparation techniques influence the end products of these transformations by comparing freeze-dried samples against those still in solution. Results showed that both organisms utilize all six nanophase iron oxides, although with varying success. The best candidates for microbial reduction were ferrihydrite, akaganéite, and lepidocrocite. The mineral transformation products and the extent of reduction varied and showed subtle differences based on organism and the type of iron oxide used. The subtle spectral differences were best characterized using combined spectroscopy techniques. This research provides new insights into microbe-mineral interactions and the discrimination of potential biosignatures in the search for life beyond Earth.

  18. Emission of Biogenic Volatile Organic Compounds in the Arctic

    DEFF Research Database (Denmark)

    Lindwall, Frida

    , emitted in order to communicate within and between trophic levels and as protection against biotic and abiotic stresses, or as byproducts. Some BVOCs are very reactive, and when entering the atmosphere they rapidly react with for example hydroxyl radicals and ozone, affecting the oxidative capacity......Emissions of biogenic volatile organic compounds (BVOCs) from arctic ecosystems are scarcely studied and the effect of climate change on BVOC emissions even less so. BVOCs are emitted from all living organisms and play a role for atmospheric chemistry. The major part of BVOCs derives from plants...... dependent and the emissions will increase in a future warmer climate. The aims of this dissertation were to study BVOC emission rates and blends from arctic ecosystems and to reveal the effect of climate change on BVOC emissions from the Arctic. BVOC emissions were measured in ambient and modified...

  19. Monitoring biogenic volatile compounds emitted by Eucalyptus citriodora using SPME.

    Science.gov (United States)

    Zini, C A; Augusto, F; Christensen, T E; Smith, B P; Caramão, E B; Pawliszy, J

    2001-10-01

    A procedure to monitor BVOC emitted by living plants using SPME technique is presented. For this purpose, a glass sampling chamber was designed. This device was employed for the characterization of biogenic volatile compounds emitted by leaves of Eucalyptus citriodora. After extraction with SPME fibers coated with PDMS/ DVB, it was possible to identify or detect 33 compounds emitted by this plant. A semiquantitative approach was applied to monitor the behavior of the emitted BVOC during 9 days. Circadian profiles of the variation in the concentration of isoprene were plotted. Using diffusion-based SPME quantitation, a recently introduced analytical approach, with extraction times as short as 15 s, it was possible to quantify subparts-per-billion amounts of isoprene emitted by this plant.

  20. Pharmacological potential of biogenic amine-polyamine interactions beyond neurotransmission.

    Science.gov (United States)

    Sánchez-Jiménez, F; Ruiz-Pérez, M V; Urdiales, J L; Medina, M A

    2013-09-01

    Histamine, serotonin and dopamine are biogenic amines involved in intercellular communication with multiple effects on human pathophysiology. They are products of two highly homologous enzymes, histidine decarboxylase and l-aromatic amino acid decarboxylase, and transmit their signals through different receptors and signal transduction mechanisms. Polyamines derived from ornithine (putrescine, spermidine and spermine) are mainly involved in intracellular effects related to cell proliferation and death mechanisms. This review summarizes structural and functional evidence for interactions between components of all these amine metabolic and signalling networks (decarboxylases, transporters, oxidases, receptors etc.) at cellular and tissue levels, distinct from nervous and neuroendocrine systems, where the crosstalk among these amine-related components can also have important pathophysiological consequences. The discussion highlights aspects that could help to predict and discuss the effects of intervention strategies. © 2013 The Authors. British Journal of Pharmacology © 2013 The British Pharmacological Society.

  1. Impact of biogenic emissions on feedbacks in the climate system

    Science.gov (United States)

    Krüger, Olaf

    2017-04-01

    Impact of biogenic emissions on feedbacks in the climate system Bio-geophysical feedback between marine or continental ecosystems and the atmosphere potentially can alter climate change. A prominent feedback loop which is under discussion since 1983 bases on the emission of biologically produced gases - molecular oxygen, sulphur containing compounds and possibly isoprene, supersaturated in oceanic waters - into the marine troposphere. These by-products of phytoplankton metabolism lead to aerosol production and procure sustained influence on climate via modulation of cloud optical properties. In this contribution some findings related to the above mentioned climate processes are presented with special emphasis on marine ecosystems. A comparison of marine and continental ecosystems is made and different processes with major impact on feedbacks in the climate system are discussed.

  2. Emissions of biogenic sulfur gases from northern bogs and fens

    Science.gov (United States)

    Demello, William Zamboni; Hines, Mark E.; Bayley, Suzanne E.

    1992-01-01

    Sulfur gases are important components of the global cycle of S. They contribute to the acidity of precipitation and they influence global radiation balance and climate. The role of terrestrial sources of biogenic S and their effect on atmospheric chemistry remain as major unanswered questions in our understanding of the natural S cycle. The role of northern wetlands as sources and sinks of gaseous S by measuring rates of S gas exchange as a function of season, hydrologic conditions, and gradients in tropic status was investigated. Experiments were conducted in wetlands in New Hampshire, particularly a poor fen, and in Mire 239, a poor fen at the Experimental Lakes Area (ELA) in Ontario. Emissions were determined using Teflon enclosures, gas cryotrapping methods and gas chromatography (GC) with flame photometric detection. Dynamic (sweep flow) and static enclosures were employed which yielded similar results. Dissolved S gases and methane were determined by gas stripping followed by GC.

  3. Sustainable use of biogenic fuels resources through industrial synergies

    International Nuclear Information System (INIS)

    Schuech, Andrea; Nelles, Michael; Nassour, Abdallah

    2017-01-01

    The term industrial symbiosis is used when traditionally separate companies and industries work together in a collective approach to physically exchange materials, energy, water and by-products with a mutual competitive advantage. Aim of the European project ''UBIS - Urban Baltic Industrial Symbiosis'' (INTERREG South-Baltic Programme) is to use biogenic resources as well as waste and residues sustainable in industrial symbiosis and to reduce emissions at the same time. Even if a lot has already been achieved in this area, there are still many unused material flows and there are possibilities to use them even more efficiently. In the project existing collaborations will be investigated as well as new ones identified and evaluated. This article introduces the UBIS project and provides an insight into the subject of industrial symbiosis as well examples described.

  4. Ion-induced nucleation of pure biogenic particles

    CERN Document Server

    Kirkby, Jasper; Sengupta, Kamalika; Frege, Carla; Gordon, Hamish; Williamson, Christina; Heinritzi, Martin; Simon, Mario; Yan, Chao; Almeida, João; Tröstl, Jasmin; Nieminen, Tuomo; Ortega, Ismael K; Wagner, Robert; Adamov, Alexey; Amorim, Antonio; Bernhammer, Anne-Kathrin; Bianchi, Federico; Breitenlechner, Martin; Brilke, Sophia; Chen, Xuemeng; Craven, Jill; Dias, antonio; Ehrhart, Sebastian; Flagan, Richard C; Franchin, Alessandro; Fuchs, Claudia; Guida, Roberto; Hakala, Jani; Hoyle, Christopher R; Jokinen, Tuija; Junninen, Heikki; Kangasluoma, Juha; Kim, Jaeseok; Krapf, Manuel; Kürten, andreas; Laaksonen, Ari; Lehtipalo, Katrianne; Makhmutov, Vladimir; Mathot, Serge; Molteni, Ugo; Onnela, antti; Peräkylä, Otso; Piel, Felix; Petäjä, Tuukka; Praplan, Arnaud P; Pringle, Kirsty; Rap, Alexandru; Richards, Nigel A D; Riipinen, Ilona; Rissanen, Matti P; Rondo, Linda; Sarnela, Nina; Schobesberger, Siegfried; Scott, Catherine E; Seinfeld, John H; Sipilä, Mikko; Steiner, Gerhard; Stozhkov, Yuri; Stratmann, Frank; Tomé, Antonio; Virtanen, Annele; Vogel, Alexander L; Wagner, Andrea C; Wagner, Paul E; Weingartner, Ernest; Wimmer, Daniela; Winkler, Paul M; Ye, Penglin; Zhang, Xuan; Hansel, Armin; Dommen, Josef; Donahue, Neil M; Worsnop, Douglas R; Baltensperger, Urs; Kulmala, Markku; Carslaw, Kenneth S; Curtius, Joachim

    2016-01-01

    Atmospheric aerosols and their effect on clouds are thought to be important for anthropogenic radiative forcing of the climate, yet remain poorly understood. Globally, around half of cloud condensation nuclei originate from nucleation of atmospheric vapours. It is thought that sulfuric acid is essential to initiate most particle formation in the atmosphere and that ions have a relatively minor role. Some laboratory studies, however, have reported organic particle formation without the intentional addition of sulfuric acid, although contamination could not be excluded. Here we present evidence for the formation of aerosol particles from highly oxidized biogenic vapours in the absence of sulfuric acid in a large chamber under atmospheric conditions. The highly oxygenated molecules (HOMs) are produced by ozonolysis of $\\alpha$-pinene. We find that ions from Galactic cosmic rays increase the nucleation rate by one to two orders of magnitude compared with neutral nucleation. Our experimental findings are supported...

  5. The MUMBA campaign: measurements of urban, marine and biogenic air

    Directory of Open Access Journals (Sweden)

    C. Paton-Walsh

    2017-06-01

    Full Text Available The Measurements of Urban, Marine and Biogenic Air (MUMBA campaign took place in Wollongong, New South Wales (a small coastal city approximately 80 km south of Sydney, Australia from 21 December 2012 to 15 February 2013. Like many Australian cities, Wollongong is surrounded by dense eucalyptus forest, so the urban airshed is heavily influenced by biogenic emissions. Instruments were deployed during MUMBA to measure the gaseous and aerosol composition of the atmosphere with the aim of providing a detailed characterisation of the complex environment of the ocean–forest–urban interface that could be used to test the skill of atmospheric models. The gases measured included ozone, oxides of nitrogen, carbon monoxide, carbon dioxide, methane and many of the most abundant volatile organic compounds. The aerosol characterisation included total particle counts above 3 nm, total cloud condensation nuclei counts, mass concentration, number concentration size distribution, aerosol chemical analyses and elemental analysis.The campaign captured varied meteorological conditions, including two extreme heat events, providing a potentially valuable test for models of future air quality in a warmer climate. There was also an episode when the site sampled clean marine air for many hours, providing a useful additional measure of the background concentrations of these trace gases within this poorly sampled region of the globe. In this paper we describe the campaign, the meteorology and the resulting observations of atmospheric composition in general terms in order to equip the reader with a sufficient understanding of the Wollongong regional influences to use the MUMBA datasets as a case study for testing a chemical transport model. The data are available from PANGAEA (http://doi.pangaea.de/10.1594/PANGAEA.871982.

  6. Emission of the main biogenic volatile organic compounds in France

    International Nuclear Information System (INIS)

    Luchetta, L.; Simon, V.; Torres, L.

    2000-01-01

    An estimation of biogenic emissions of the main non-methanic Volatile Organic Compounds (VOCs) due to the forest cover in France has been realized. 32 species representing 98% of French forest have been considered for the estimation. The latter dealt on a net made of 93 irregular spatial grids (Departments) with an average size of 75 km x 75 km. We assigned emission rates and foliar biomass densities specific to each of the 32 species. The environmental variables (temperature, light intensity) have been collected for the whole of French Departments. A special effort was extended so as to use ''Guenther's'' calculation algorithms, and specific emitting factors to species growing in France or in bordering countries. Along the way of the five years (1994-1998) of the study we have calculated the yearly mean of isoprene, mono-terpenes and Other Volatile Organic Compounds (OVOCs) emissions on the scale of the French Departments. At the national level isoprene emission is reckoned at 457 kt yr -1 and represents nearly 49% of the total emission, whereas mono-terpenes with 350 kt yr -1 and OVOCs with 129 kt yr -1 represent respectively 37% and 14% of the total. The yearly biogenic emission of VOCs in France represents virtually half the anthropic source. However in some regions (Mediterranean area) natural emissions can widely exceed anthropic emissions during certain periods. Let's note the whole of our results remains tinged with a great uncertainty because the estimations carried out are presented with correction factors that can reach values comprised between 4 and 7. (author)

  7. The MUMBA campaign: measurements of urban, marine and biogenic air

    Science.gov (United States)

    Paton-Walsh, Clare; Guérette, Élise-Andrée; Kubistin, Dagmar; Humphries, Ruhi; Wilson, Stephen R.; Dominick, Doreena; Galbally, Ian; Buchholz, Rebecca; Bhujel, Mahendra; Chambers, Scott; Cheng, Min; Cope, Martin; Davy, Perry; Emmerson, Kathryn; Griffith, David W. T.; Griffiths, Alan; Keywood, Melita; Lawson, Sarah; Molloy, Suzie; Rea, Géraldine; Selleck, Paul; Shi, Xue; Simmons, Jack; Velazco, Voltaire

    2017-06-01

    The Measurements of Urban, Marine and Biogenic Air (MUMBA) campaign took place in Wollongong, New South Wales (a small coastal city approximately 80 km south of Sydney, Australia) from 21 December 2012 to 15 February 2013. Like many Australian cities, Wollongong is surrounded by dense eucalyptus forest, so the urban airshed is heavily influenced by biogenic emissions. Instruments were deployed during MUMBA to measure the gaseous and aerosol composition of the atmosphere with the aim of providing a detailed characterisation of the complex environment of the ocean-forest-urban interface that could be used to test the skill of atmospheric models. The gases measured included ozone, oxides of nitrogen, carbon monoxide, carbon dioxide, methane and many of the most abundant volatile organic compounds. The aerosol characterisation included total particle counts above 3 nm, total cloud condensation nuclei counts, mass concentration, number concentration size distribution, aerosol chemical analyses and elemental analysis.The campaign captured varied meteorological conditions, including two extreme heat events, providing a potentially valuable test for models of future air quality in a warmer climate. There was also an episode when the site sampled clean marine air for many hours, providing a useful additional measure of the background concentrations of these trace gases within this poorly sampled region of the globe. In this paper we describe the campaign, the meteorology and the resulting observations of atmospheric composition in general terms in order to equip the reader with a sufficient understanding of the Wollongong regional influences to use the MUMBA datasets as a case study for testing a chemical transport model. The data are available from PANGAEA (http://doi.pangaea.de/10.1594/PANGAEA.871982).

  8. MapX: An In Situ, Full-Frame X-Ray Spectroscopic Imager for the Biogenic Elements

    Science.gov (United States)

    Blake, David; Sarrazin, Philippe; Thompson, Kathy; Bristow, Thomas

    2016-01-01

    Microbial life exploits microscale disequilibria at boundaries where valence, chemical potential, pH, Eh, etc. vary on a length scale commensurate with the organisms themselves - tens to hundreds of micrometers. These disequilibria can exist within cracks or veins in rocks and ice, at inter- or intra-crystalline boundaries, at sediment/water or sediment/atmosphere interfaces, or even within fluid inclusions trapped inside minerals. The detection of accumulations of the biogenic elements C,N,O,P,S at appropriate concentrations on or in a mineral/ice substrate would constitute permissive evidence of extant life, but context is also required. Does the putative biosignature exist in a habitable environment? Under what conditions of P, T, and chemical potential was the host mineralogy formed? MapX is an arm-deployed contact instrument that directly images the biogenic elements C, N, O, P, S, as well as the cations of the rock-forming minerals (Na, Mg, Al, Si, K, Ca, Ti, Cr, Mn, Fe) and important anions such as Cl, Fl. The instrument provides element images having =100 micron lateral spatial resolution over a 2.5 cm X 2.5 cm area, as well as quantitative XRF spectra from ground-selected or instrument-selected Regions of Interest (ROI) on the sample. Quantitative XRF spectra from ROI can be translated into mineralogies using ground- or instrument-based algorithms. Either an X-ray tube source (X-ray fluorescence) or a radioisotope source such as 244-Cm (alpha-particle and gamma-ray fluorescence) can be used, and characteristic X-rays emitted from the sample are imaged onto an X-ray sensitive CCD through an X-ray MicroPore Optic (MPO). As a fluorescent source, 244-Cm is highly desirable in a MapX instrument intended for life detection since high-energy alpha-particles are unrivaled in fluorescence yield for the low-Z elements. The MapX design as well as baseline performance requirements for a MapX instrument intended for life detection/identification of habitable

  9. The Deep-Sea Natural Products, Biogenic Polyphosphate (Bio-PolyP and Biogenic Silica (Bio-Silica, as Biomimetic Scaffolds for Bone Tissue Engineering: Fabrication of a Morphogenetically-Active Polymer

    Directory of Open Access Journals (Sweden)

    Florian Draenert

    2013-03-01

    Full Text Available Bone defects in human, caused by fractures/nonunions or trauma, gain increasing impact and have become a medical challenge in the present-day aging population. Frequently, those fractures require surgical intervention which ideally relies on autografts or suboptimally on allografts. Therefore, it is pressing and likewise challenging to develop bone substitution materials to heal bone defects. During the differentiation of osteoblasts from their mesenchymal progenitor/stem cells and of osteoclasts from their hemopoietic precursor cells, a lineage-specific release of growth factors and a trans-lineage homeostatic cross-talk via signaling molecules take place. Hence, the major hurdle is to fabricate a template that is functioning in a way mimicking the morphogenetic, inductive role(s of the native extracellular matrix. In the last few years, two naturally occurring polymers that are produced by deep-sea sponges, the biogenic polyphosphate (bio-polyP and biogenic silica (bio-silica have also been identified as promoting morphogenetic on both osteoblasts and osteoclasts. These polymers elicit cytokines that affect bone mineralization (hydroxyapatite formation. In this manner, bio-silica and bio-polyP cause an increased release of BMP-2, the key mediator activating the anabolic arm of the hydroxyapatite forming cells, and of RANKL. In addition, bio-polyP inhibits the progression of the pre-osteoclasts to functionally active osteoclasts. Based on these findings, new bioinspired strategies for the fabrication of bone biomimetic templates have been developed applying 3D-printing techniques. Finally, a strategy is outlined by which these two morphogenetically active polymers might be used to develop a novel functionally active polymer.

  10. Geochemical study of trace elements in micrograin minerals

    Energy Technology Data Exchange (ETDEWEB)

    Toyoda, Kazuhiro; Shinozuka, Yoshitsugu; Imai, Shiho; Baba, Naoho; Machii, Tami; Shimada, Mitsuo; Hasebe, Kiyoshi [Hokkaido Univ., Sapporo (Japan)

    1998-01-01

    Abstract of five papers are contained in this paper. 1. Neutron activation analysis of iridium in Japan P/T boundary layer sample. Iridium of Permian/Triassic (P/T) boundary layer samples in Japan are determined. A collision of materials outside of the earth was not proved. 2. Adsorbability of rare earth elements by biogenic phosphate salt particles. Phosphate minerals are very strong adsorbent of rare earth elements, so that they can use as the removal materials of them in radioactive waste. 3. Analysis of undecomposed minerals and irresoluble compounds in acid decomposed residue. In order to investigate the past global changes, a micro wave heat method was studied and good results were obtained. 4. Determination of iridium in tsunami deposits in Cuba. Very small amount of iridium was discovered in the samples. 5. Activation analysis of iridium in the sample of 300 m core of Baikal lake. (Plan). (S.Y.)

  11. Impacts of biogenic emissions of VOC and NOx on tropospheric ozone during summertime in eastern China.

    Science.gov (United States)

    Wang, Qin'geng; Han, Zhiwei; Wang, Tijian; Zhang, Renjian

    2008-05-20

    This study is intended to understand and quantify the impacts of biogenic emissions of volatile organic compounds (VOC) and nitrogen oxides (NO(x)) on the formation of tropospheric ozone during summertime in eastern China. The model system consists of the non-hydrostatic mesoscale meteorological model (MM5) and a tropospheric chemical and transport model (TCTM) with the updated carbon-bond chemical reaction mechanism (CBM-IV). The spatial resolution of the system domain is 30 km x 30 km. The impacts of biogenic emissions are investigated by performing simulations (36 h) with and without biogenic emissions, while anthropogenic emissions are constant. The results indicate that biogenic emissions have remarkable impacts on surface ozone in eastern China. In big cities and their surrounding areas, surface ozone formation tends to be VOC-limited. The increase in ozone concentration by biogenic VOC is generally 5 ppbv or less, but could be more than 10 ppbv or even 30 ppbv in some local places. The impacts of biogenic NO(x) are different or even contrary in different regions, depending on the relative availability of NO(x) and VOC. The surface ozone concentrations reduced or increased by the biogenic NO(x) could be as much as 10 ppbv or 20 ppbv, respectively. The impacts of biogenic emissions on ozone aloft are generally restricted to the boundary layer and generally more obvious during the daytime than during the nighttime. This study is useful for understanding the role of biogenic emissions and for planning strategies for surface ozone abatement in eastern China. Due to limitations of the emission inventories used and the highly non-linear nature of zone formation, however, some uncertainties remain in the results.

  12. Construction Minerals Operations

    Data.gov (United States)

    Department of Homeland Security — This map layer includes construction minerals operations in the United States. The data represent commodities covered by the Minerals Information Team (MIT) of the...

  13. Mineral commodity summaries 2015

    Science.gov (United States)

    ,

    2015-01-01

    Each chapter of the 2015 edition of the U.S. Geological Survey (USGS) Mineral Commodity Summaries (MCS) includes information on events, trends, and issues for each mineral commodity as well as discussions and tabular presentations on domestic industry structure, Government programs, tariffs, 5-year salient statistics, and world production and resources. The MCS is the earliest comprehensive source of 2014 mineral production data for the world. More than 90 individual minerals and materials are covered by two-page synopses.

  14. Operation of Marine Diesel Engines on Biogenic Fuels: Modification of Emissions and Resulting Climate Effects

    OpenAIRE

    Petzold, A.; Lauer, P.; Fritsche, U.; Hasselbach, J.; Lichtenstern, M.; Schlager, H.; Fleischer, F.

    2011-01-01

    The modification of emissions of climate-sensitive exhaust compounds such as CO2, NOx, hydrocarbons, and particulate matter from medium-speed marine diesel engines was studied for a set of fossil and biogenic fuels. Applied fossil fuels were the reference heavy fuel oil (HFO) and the low-sulfur marine gas oil (MGO); biogenic fuels were palm oil, soybean oil, sunflower oil, and animal fat. Greenhouse gas (GHG) emissions related to the production of biogenic fuels were treated by means of a fue...

  15. Sustainable use of biogenic fuels resources through industrial synergies; Nachhaltige energetische Nutzung biogener Ressourcen durch industrielle Synergien

    Energy Technology Data Exchange (ETDEWEB)

    Schuech, Andrea [Rostock Univ. (Germany). Professur Abfall- und Stoffstromwirtschaft; Nelles, Michael [Rostock Univ. (Germany). Agrar- und Umweltwissenschaftliche Fakultaet; Nassour, Abdallah

    2017-08-01

    The term industrial symbiosis is used when traditionally separate companies and industries work together in a collective approach to physically exchange materials, energy, water and by-products with a mutual competitive advantage. Aim of the European project ''UBIS - Urban Baltic Industrial Symbiosis'' (INTERREG South-Baltic Programme) is to use biogenic resources as well as waste and residues sustainable in industrial symbiosis and to reduce emissions at the same time. Even if a lot has already been achieved in this area, there are still many unused material flows and there are possibilities to use them even more efficiently. In the project existing collaborations will be investigated as well as new ones identified and evaluated. This article introduces the UBIS project and provides an insight into the subject of industrial symbiosis as well examples described.

  16. The Iron-Deficiency Induced Phenolics Accumulation May Involve in Regulation of Fe(III) Chelate Reductase in Red Clover.

    Science.gov (United States)

    Jin, Chong Wei; He, Xiu Xia; Zheng, Shao Jian

    2007-09-01

    Although considerable researches have been conducted on the physiological responses to plant iron (Fe) deficiency stress in dicotyledonous plants, much still needs to be learned about the regulation of these processes. In the present research, red clover was used to investigate the role of root phenolics accumulation in regulating Fe-deficiency induced Fe(III) chelate reductase (FCR). The root FCR activity, IAA and phenolics accumulation, and also the phenolics secretion were greatly increased by the Fe deficiency treatment. The application of TIBA (2,3,5-triiodobenoic acid) to the stem, an IAA polar transport inhibitor, which could decrease IAA accumulation in root, significantly inhibited the FCR activity, but did not effect root phenolics accumulation and secretion, suggesting that IAA itself did not involve in root phenolics accumulation and secretion. In contrast, the Fe deficiency treatment significantly decreased the root IAA-oxidase activity. Interestingly the phenolics extracted from roots inhibited IAA-oxidase activity in vitro, and this inhibition was greater with phenolics extracted from roots of Fe deficient plants than that from Fe sufficient plants, indicating that the Fe deficiency-induced IAA-oxidase inhibition probably caused by the phenolics accumulation in Fe deficient roots. Based on these observations, we propose a model where under Fe deficiency stress in dicots, an increase in root phenolics concentrations plays a role in regulating root IAA levels through an inhibition of root IAA oxidase activity. This response, leads to, or at least partially leads to an increase in root IAA levels, which in turn help induce increased root FCR activity.

  17. Influence of iron redox cycling on organo-mineral associations in Arctic tundra soil

    Science.gov (United States)

    Herndon, Elizabeth; AlBashaireh, Amineh; Singer, David; Roy Chowdhury, Taniya; Gu, Baohua; Graham, David

    2017-06-01

    Arctic tundra stores large quantities of soil organic matter under varying redox conditions. As the climate warms, these carbon reservoirs are susceptible to increased rates of decomposition and release to the atmosphere as the greenhouse gases carbon dioxide (CO2) and methane (CH4). Geochemical interactions between soil organic matter and minerals influence decomposition in many environments but remain poorly understood in Arctic tundra systems and are not considered in decomposition models. The accumulation of iron (Fe) oxyhydroxides and organo-iron precipitates at redox interfaces may be particularly important for carbon cycling given that ferric iron [Fe(III)] species can enhance decomposition by serving as terminal electron acceptors in anoxic soils or inhibit microbial decomposition by binding organic molecules. Here, we examine chemical properties of solid-phase Fe and organic matter in organic and mineral horizons within the seasonally thawed active layer of Arctic tundra on the North Slope of Alaska. Spectroscopic techniques, including micro-X-ray fluorescence (μXRF) mapping, micro-X-ray absorption near-edge structure (μXANES) spectroscopy, and Fourier transform infrared spectroscopy (FTIR), were coupled with chemical sequential extractions and physical density fractionations to evaluate the spatial distribution and speciation of Fe-bearing phases and associated organic matter in soils. Organic horizons were enriched in poorly crystalline and crystalline iron oxides, and approximately 60% of total Fe stored in organic horizons was calculated to derive from upward translocation from anoxic mineral horizons. Ferrihydrite and goethite were present as coatings on mineral grains and plant debris, and in aggregates with clays and particulate organic matter. Minor amounts of ferrous iron [Fe(II)] were present in iron sulfides (i.e., pyrite and greigite) in mineral horizon soils and iron phosphates (vivianite) in organic horizons. Concentrations of organic

  18. Heterogeneous Reactions of Limonene on Mineral Dust: Impacts of Adsorbed Water and Nitric Acid.

    Science.gov (United States)

    Lederer, Madeline R; Staniec, Allison R; Coates Fuentes, Zoe L; Van Ry, Daryl A; Hinrichs, Ryan Z

    2016-12-08

    Biogenic volatile organic compounds (BVOCs), including the monoterpene limonene, are a major source of secondary organic aerosol (SOA). While gas-phase oxidation initiates the dominant pathway for BVOC conversion to SOA, recent studies have demonstrated that biogenic hydrocarbons can also directly react with acidic droplets. To investigate whether mineral dust may facilitate similar reactive uptake of biogenic hydrocarbons, we studied the heterogeneous reaction of limonene with mineral substrates using condensed-phase infrared spectroscopy and identified the formation of irreversibly adsorbed organic products. For kaolinite, Arizona Test Dust, and silica at 30% relative humidity, GC-MS identified limonene-1,2-diol as the dominant product with total organic surface concentrations on the order of (3-5) × 10 18 molecules m -2 . Experiments with 18 O-labeled water support a mechanism initiated by oxidation of limonene by surface redox sites forming limonene oxide followed by water addition to the epoxide to form limonenediol. Limonene uptake on α-alumina, γ-alumina, and montmorillonite formed additional products in high yield, including carveol, carvone, limonene oxide, and α-terpineol. To model tropospheric processing of mineral aerosol, we also exposed each mineral substrate to gaseous nitric acid prior to limonene uptake and identified similar surface adsorbed products that were formed at rates 2 to 5 times faster than without nitrate coatings. The initial rate of reaction was linearly dependent on gaseous limonene concentration between 5 × 10 12 and 5 × 10 14 molecules cm -3 (0.22-20.5 ppm) consistent with an Eley-Rideal-type mechanism in which gaseous limonene reacts directly with reactive surface sites. Increasing relative humidity decreased the amount of surface adsorbed products indicating competitive adsorption of surface adsorbed water. Using a laminar flow tube reactor we measured the uptake coefficient for limonene on kaolinite at 25% RH to range from

  19. A comparison between acoustic properties and heat effects in biogenic (magnetosomes) and abiotic magnetite nanoparticle suspensions

    Energy Technology Data Exchange (ETDEWEB)

    Józefczak, A., E-mail: aras@amu.edu.pl [Institute of Acoustics, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614 Poznań (Poland); Leszczyński, B. [Institute of Acoustics, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614 Poznań (Poland); NanoBioMedical Centre, Adam Mickiewicz University, Umultowska 85, 61-614 Poznań (Poland); Skumiel, A.; Hornowski, T. [Institute of Acoustics, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614 Poznań (Poland)

    2016-06-01

    Magnetic nanoparticles show unique properties and find many applications because of the possibility to control their properties using magnetic field. Magnetic nanoparticles are usually synthesized chemically and modification of the particle surface is necessary. Another source of magnetic nanoparticles are various magnetotactic bacteria. These biogenic nanoparticles (magnetosomes) represent an attractive alternative to chemically synthesized iron oxide particles because of their unique characteristics and a high potential for biotechnological and biomedical applications. This work presents a comparison between acoustic properties of biogenic and abiotic magnetite nanoparticle suspensions. Experimental studies have shown the influence of a biological membrane on the ultrasound properties of magnetosomes suspension. Finally the heat effect in synthetic and biogenic magnetite nanoparticles is also discussed. The experimental study shows that magnetosomes present good heating efficiency. - Highlights: • A biogenic and abiotic magnetite nanoparticle suspensions are investigated. • A comparison between ultrasonic properties and heat effects is presented. • Magnetosomes and abiotic magnetite nanoparticles exhibit good heating efficiency.

  20. Aging of biogenic secondary organic aerosol via gas-phase OH radical reactions

    DEFF Research Database (Denmark)

    Donahue, Neil M.; Henry, Kaytlin M.; Mentel, Thomas F.

    2012-01-01

    The Multiple Chamber Aerosol Chemical Aging Study (MUCHACHAS) tested the hypothesis that hydroxyl radical (OH) aging significantly increases the concentration of first-generation biogenic secondary organic aerosol (SOA). OH is the dominant atmospheric oxidant, and MUCHACHAS employed environmental...

  1. Biogenic silica in tidal freshwater marsh sediments and vegetation (Schelde estuary, Belgium)

    NARCIS (Netherlands)

    Struyf, E.; van Damme, S.; Gribsholt, B.; Middelburg, J.J.; Meire, P.

    2005-01-01

    To date, estuarine ecosystem research has mostly neglected silica cycling in freshwater intertidal marshes. However, tidal marshes can store large amounts of biogenic silica (BSi) in vegetation and sediment. BSi content of the typical freshwater marsh plants Phragmites australis, Impatiens

  2. Biogenic amines degradation by malolactic bacteria: towards a potential application in wine

    Directory of Open Access Journals (Sweden)

    Vittorio eCapozzi

    2012-04-01

    Full Text Available Biogenic amines in wine represent a toxicological risk for the health of the consumer, with several trade implications. In this study 26 strains of Lactobacillus plantarum were analysed for their ability to degrade biogenic amines commonly found during wine fermentation. Two strains of L. plantarum were selected in reason of their ability to degrade putrescine and tyramine. The degradation was assessed in vitro, both in presence of the biogenic amines and in presence of the specific chemical precursor and of producer bacteria. The two L. plantarum biotypes were found capable to work synergically. In addition, the survival in wine-like medium and the aptitude to degrade malic acid after alcoholic fermentation of the selected L. plantarum strains was analysed. Our results suggest the potential application of wine L. plantarum strains to design malolactic starter cultures able to degrade biogenic amines in wine.

  3. A comparison between acoustic properties and heat effects in biogenic (magnetosomes) and abiotic magnetite nanoparticle suspensions

    International Nuclear Information System (INIS)

    Józefczak, A.; Leszczyński, B.; Skumiel, A.; Hornowski, T.

    2016-01-01

    Magnetic nanoparticles show unique properties and find many applications because of the possibility to control their properties using magnetic field. Magnetic nanoparticles are usually synthesized chemically and modification of the particle surface is necessary. Another source of magnetic nanoparticles are various magnetotactic bacteria. These biogenic nanoparticles (magnetosomes) represent an attractive alternative to chemically synthesized iron oxide particles because of their unique characteristics and a high potential for biotechnological and biomedical applications. This work presents a comparison between acoustic properties of biogenic and abiotic magnetite nanoparticle suspensions. Experimental studies have shown the influence of a biological membrane on the ultrasound properties of magnetosomes suspension. Finally the heat effect in synthetic and biogenic magnetite nanoparticles is also discussed. The experimental study shows that magnetosomes present good heating efficiency. - Highlights: • A biogenic and abiotic magnetite nanoparticle suspensions are investigated. • A comparison between ultrasonic properties and heat effects is presented. • Magnetosomes and abiotic magnetite nanoparticles exhibit good heating efficiency.

  4. Chelated minerals for poultry

    Directory of Open Access Journals (Sweden)

    SL Vieira

    2008-06-01

    Full Text Available Organic minerals have been subject of an increasing number of investigations recently. These compounds can be considered the most significant event regarding commercial forms of minerals targeting animal supplementation in the last decades. Minerals, especially metals, are usually supplemented in poultry feeds using cheap saline sources and have never required a lot of attention in terms of quality. On the other hand, definitions of organic minerals are very broad and frequently lead to confusion when decision-making becomes necessary. Organic minerals include any mineral bound to organic compounds, regardless of the type of existing bond between mineral and organic molecules. Proteins and carbohydrates are the most frequent candidates in organic mineral combinations. Organic fraction size and bond type are not limitations in organic mineral definition; however, essential metals (Cu, Fe, Zn, and Mn can form coordinated bonds, which are stable in intestinal lumen. Metals bound to organic ligands by coordinated bonds can dissociate within animal metabolism whereas real covalent bonds cannot. Chelated minerals are molecules that have a metal bound to an organic ligand through coordinated bonds; but many organic minerals are not chelates or are not even bound through coordinated bonds. Utilization of organic minerals is largely dependent on the ligand; therefore, amino acids and other small molecules with facilitated access to the enterocyte are supposed to be better utilized by animals. Organic minerals with ligands presenting long chains may require digestion prior to absorption. After absorption, organic minerals may present physiological effects, which improve specific metabolic responses, such as the immune response. Many studies have demonstrated the benefits of metal-amino acid chelates on animal metabolism, but the detection positive effects on live performance is less consistent.

  5. Validation of an HPLC Analytical Method for Determination of Biogenic Amines in Agricultural Products and Monitoring of Biogenic Amines in Korean Fermented Agricultural Products.

    Science.gov (United States)

    Yoon, Hyeock; Park, Jung Hyuck; Choi, Ari; Hwang, Han-Joon; Mah, Jae-Hyung

    2015-09-01

    An HPLC analytical method was validated for the quantitative determination of biogenic amines in agricultural products. Four agricultural foods, including apple juice, Juk, corn oil and peanut butter, were selected as food matrices based on their water and fat contents (i.e., non-fatty liquid, non-fatty solid, fatty liquid and fatty solid, respectively). The precision, accuracy, recovery, limit of detection (LOD) and quantification (LOQ) were determined to test the validity of an HPLC procedure for the determination of biogenic amines, including tryptamine, β-phenylethylamine, putrescine, cadaverine, histamine, tyramine, spermidine and spermine, in each matrix. The LODs and LOQs for the biogenic amines were within the range of 0.01~0.10 mg/kg and 0.02~0.31 mg/kg, respectively. The relative standard deviation (RSD) of intraday for biogenic amine concentrations ranged from 1.86 to 5.95%, whereas the RSD of interday ranged from 2.08 to 5.96%. Of the matrices spiked with biogenic amines, corn oil with tyramine and Juk with putrescine exhibited the least accuracy of 84.85% and recovery rate of 89.63%, respectively, at the lowest concentration (10 mg/kg). Therefore, the validation results fulfilled AOAC criteria and recommendations. Subsequently, the method was applied to the analysis of biogenic amines in fermented agricultural products for a total dietary survey in Korea. Although the results revealed that Korean traditional soy sauce and Doenjang contained relatively high levels of histamine, the amounts are of no concern if these fermented agricultural products serve as condiments.

  6. Sub-Antarctic marine aerosol: dominant contributions from biogenic sources

    Directory of Open Access Journals (Sweden)

    J. Schmale

    2013-09-01

    Full Text Available Biogenic influences on the composition and characteristics of aerosol were investigated on Bird Island (54°00' S, 38°03' W in the South Atlantic during November and December 2010. This remote marine environment is characterised by large seabird and seal colonies. The chemical composition of the submicron particles, measured by an aerosol mass spectrometer (AMS, was 21% non-sea-salt sulfate, 2% nitrate, 8% ammonium, 22% organics and 47% sea salt including sea salt sulfate. A new method to isolate the sea spray signature from the high-resolution AMS data was applied. Generally, the aerosol was found to be less acidic than in other marine environments due to the high availability of ammonia, from local fauna emissions. By positive matrix factorisation five different organic aerosol (OA profiles could be isolated: an amino acid/amine factor (AA-OA, 18% of OA mass, a methanesulfonic acid OA factor (MSA-OA, 25%, a marine oxygenated OA factor (M-OOA, 41%, a sea spray OA fraction (SS-OA, 7% and locally produced hydrocarbon-like OA (HOA, 9%. The AA-OA was dominant during the first two weeks of November and found to be related with the hatching of penguins in a nearby colony. This factor, rich in nitrogen (N : C ratio = 0.13, has implications for the biogeochemical cycling of nitrogen in the area as particulate matter is often transported over longer distances than gaseous N-rich compounds. The MSA-OA was mainly transported from more southerly latitudes where phytoplankton bloomed. The bloom was identified as one of three sources for particulate sulfate on Bird Island, next to sea salt sulfate and sulfate transported from South America. M-OOA was the dominant organic factor and found to be similar to marine OA observed at Mace Head, Ireland. An additional OA factor highly correlated with sea spray aerosol was identified (SS-OA. However, based on the available data the type of mixture, internal or external, could not be determined. Potassium was not

  7. Managing Your Wine Fermentation to Reduce the Risk of Biogenic Amine Formation

    Science.gov (United States)

    Smit, Anita Yolandi; Engelbrecht, Lynn; du Toit, Maret

    2012-01-01

    Biogenic amines are nitrogenous organic compounds produced in wine from amino acid precursors mainly by microbial decarboxylation. The concentration of biogenic amines that can potentially be produced is dependent on the amount of amino acid precursors in the medium, the presence of decarboxylase positive microorganisms and conditions that enable microbial or biochemical activity such as the addition of nutrients to support the inoculated starter cultures for alcoholic and malolactic fermentation (MLF). MLF can be conducted using co-inoculation or an inoculation after the completion of alcoholic fermentation that may also affect the level of biogenic amines in wine. This study focused on the impact of the addition of complex commercial yeast and bacterial nutrients and the use of different MLF inoculation scenarios on the production of biogenic amines in wine. Results showed that the addition of complex nutrients to real grape must could potentially increase histamine concentrations in wine. The same experiment in synthetic grape must showed a similar trend for putrescine and cadaverine. The effect of different MLF inoculation scenarios was examined in two cultivars, Pinotage and Shiraz. Conflicting results was obtained. In the Shiraz, co-inoculation resulted in lower biogenic amine concentrations after MLF compared to before MLF, while the concentration was higher in the Pinotage. However, the production of biogenic amines was affected more by the presence of decarboxylase positive lactic acid bacteria than by the addition of complex nutrients or the inoculation scenario. PMID:22419915

  8. Biogenic amines in the meat of hunted pheasant and hare during the course of storage

    Directory of Open Access Journals (Sweden)

    Zdeňka Hutařová

    2014-01-01

    Full Text Available Venison is becoming more and more interesting for consumers. Although treatment procedures of hunted game differ from slaughtered livestock, the hygienic quality of game meat must still be ensured. Potential indicators of meat hygienic quality include the content of biogenic amines. The aim of the present study was to assess the content and changes of biogenic amines in the muscles of selected kinds of small game (common pheasant and brown hare during storage, and based on the obtained results, to assess the hygienic quality of the meat. Biogenic amines (putrescine, cadaverine, histamine, tyramine, phenylethylamine, and tryptamine in the breast and thigh muscles separated by reverse phase liquid chromatography and consequently were detected using tandem mass spectrometry. Based on the determined content of biogenic amines, both pheasant and hare meats complied with values of high quality meat. The sum of biogenic amines did not exceed the value of 5 mg/kg after 7 days at 0 °C or 7 °C in pheasant meat, and after 21 days at 0 °C or after 14 days at 7 °C in brown hare meat. The biogenic amine content and the speed of their formation in venison can be very helpful for the evaluation of both meat hygienic quality and safety of these foods during storage.

  9. Land use change affects biogenic silica pool distribution in a subtropical soil toposequence

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    D. Unzué-Belmonte

    2017-07-01

    Full Text Available Land use change (deforestation has several negative consequences for the soil system. It is known to increase erosion rates, which affect the distribution of elements in soils. In this context, the crucial nutrient Si has received little attention, especially in a tropical context. Therefore, we studied the effect of land conversion and erosion intensity on the biogenic silica pools in a subtropical soil in the south of Brazil. Biogenic silica (BSi was determined using a novel alkaline continuous extraction where Si / Al ratios of the fractions extracted are used to distinguish BSi and other soluble fractions: Si / Al > 5 for the biogenic AlkExSi (alkaline-extractable Si and Si / Al < 5 for the non-biogenic AlkExSi. Our study shows that deforestation can rapidly (< 50 years deplete the biogenic AlkExSi pool in soils depending on the slope of the study site (10–53 %, with faster depletion in steeper sites. We show that higher erosion in steeper sites implies increased accumulation of biogenic Si in deposition zones near the bottom of the slope, where rapid burial can cause removal of BSi from biologically active zones. Our study highlights the interaction of erosion strength and land use for BSi redistribution and depletion in a soil toposequence, with implications for basin-scale Si cycling.

  10. [Development of biogenic VOC emissions inventory with high temporal and spatial resolution].

    Science.gov (United States)

    Hu, Y; Zhang, Y; Xie, S; Zeng, L

    2001-11-01

    A new method was developed to estimate biogenic VOC emissions with high temporal and spatial resolution by use of Mesoscale Meteorology Modeling System Version5 (MM5). In this method, the isoprene and monoterpene standard emission factors for some types of tree in China were given and the standard VOC emission factors and seasonally average densities of leaf biomass for all types of vegetation were determined. A biogenic VOC emissions inventory in South China was established which could meet the requirement of regional air quality modeling. Total biogenic VOC emissions in a typical summer day were estimated to be 1.12 x 10(4) metric tons in an area of 729 km x 729 km of South China. The results showed the temporal and spatial distributions of biogenic VOC emission rates in this area. The results also showed that the geographical distribution of biogenic VOC emission rates depended on vegetation types and their distributions and the diurnal variation mainly depended on the solar radiation and temperature. The uncertainties of estimating biogenic VOC emissions were also discussed.

  11. Operation of marine diesel engines on biogenic fuels: modification of emissions and resulting climate effects.

    Science.gov (United States)

    Petzold, Andreas; Lauer, Peter; Fritsche, Uwe; Hasselbach, Jan; Lichtenstern, Michael; Schlager, Hans; Fleischer, Fritz

    2011-12-15

    The modification of emissions of climate-sensitive exhaust compounds such as CO(2), NO(x), hydrocarbons, and particulate matter from medium-speed marine diesel engines was studied for a set of fossil and biogenic fuels. Applied fossil fuels were the reference heavy fuel oil (HFO) and the low-sulfur marine gas oil (MGO); biogenic fuels were palm oil, soybean oil, sunflower oil, and animal fat. Greenhouse gas (GHG) emissions related to the production of biogenic fuels were treated by means of a fuel life cycle analysis which included land use changes associated with the growth of energy plants. Emissions of CO(2) and NO(x) per kWh were found to be similar for fossil fuels and biogenic fuels. PM mass emission was reduced to 10-15% of HFO emissions for all low-sulfur fuels including MGO as a fossil fuel. Black carbon emissions were reduced significantly to 13-30% of HFO. Changes in emissions were predominantly related to particulate sulfate, while differences between low-sulfur fossil fuels and low-sulfur biogenic fuels were of minor significance. GHG emissions from the biogenic fuel life cycle (FLC) depend crucially on energy plant production conditions and have the potential of shifting the overall GHG budget from positive to negative compared to fossil fuels.

  12. Magnetic susceptibilities of minerals

    Science.gov (United States)

    Rosenblum, Sam; Brownfield, I.K.

    2000-01-01

    Magnetic separation of minerals is a topic that is seldom reported in the literature for two reasons. First, separation data generally are byproducts of other projects; and second, this study requires a large amount of patience and is unusually tedious. Indeed, we suspect that most minerals probably are never investigated for this property. These data are timesaving for mineralogists who concentrate mono-mineralic fractions for chemical analysis, age dating, and for other purposes. The data can certainly be used in the ore-beneficiation industries. In some instances, magnetic-susceptibility data may help in mineral identification, where other information is insufficient. In past studies of magnetic separation of minerals, (Gaudin and Spedden, 1943; Tille and Kirkpatrick, 1956; Rosenblum, 1958; Rubinstein and others, 1958; Flinter, 1959; Hess, 1959; Baker, 1962; Meric and Peyre, 1963; Rojas and others, 1965; and Duchesne, 1966), the emphasis has been on the ferromagnetic and paramagnetic ranges of extraction. For readers interested in the history of magnetic separation of minerals, Krumbein and Pettijohn (1938, p. 344-346) indicated nine references back to 1848. The primary purpose of this paper is to report the magnetic-susceptibility data on as many minerals as possible, similar to tables of hardness, specific gravity, refractive indices, and other basic physical properties of minerals. A secondary purpose is to demonstrate that the total and best extraction ranges are influenced by the chemistry of the minerals. The following notes are offered to help avoid problems in separating a desired mineral concentrate from mixtures of mineral grains.

  13. Impacts of seawater saturation state (ΩA = 0.4-4.6) and temperature (10, 25 °C) on the dissolution kinetics of whole-shell biogenic carbonates

    Science.gov (United States)

    Ries, Justin B.; Ghazaleh, Maite N.; Connolly, Brian; Westfield, Isaac; Castillo, Karl D.

    2016-11-01

    soluble polymorphs of CaCO3 being the most vulnerable to these stressors. The effects of saturation state and temperature on gross shell dissolution rate were modeled with an exponential asymptotic function (y =B0 -B2 ·e B1 Ω) that appeals to the general Arrhenius-derived rate equation for mineral dissolution [ r = (C ·e -Ea / RT) (1 - Ω)n]. Although the dissolution curves for the investigated biogenic CaCO3 exhibited exponential asymptotic trends similar to those of inorganic CaCO3, the observation that gross dissolution of whole-shell biogenic CaCO3 occurred (albeit at lower rates) even in treatments that were oversaturated (Ω > 1) with respect to both aragonite and calcite reveals fundamental differences between the dissolution kinetics of whole-shell biogenic CaCO3 and inorganic CaCO3. Thus, applying stoichiometric solubility products derived for inorganic CaCO3 to model gross dissolution of biogenic carbonates may substantially underestimate the impacts of ocean acidification on net calcification (gross calcification minus gross dissolution) of systems ranging in scale from individual organisms to entire ecosystems (e.g., net ecosystem calcification). Finally, these experiments permit rough estimation of the impact of CO2-induced ocean acidification on the gross calcification rates of various marine calcifiers, calculated as the difference between net calcification rates derived empirically in prior studies and gross dissolution rates derived from the present study. Organisms' gross calcification responses to acidification were generally less severe than their net calcification response patterns, with aragonite mollusks (bivalves, gastropods) exhibiting the most negative gross calcification response to acidification, and photosynthesizing organisms, including corals and coralline red algae, exhibiting relative resilience.

  14. Biogenic amines and hygienic quality of lucerne silage

    Directory of Open Access Journals (Sweden)

    Mlejnkova Veronika

    2016-01-01

    Full Text Available This experiment examined the influence of two different silage additives of biological (Lactococcus lactis, Lactobacillus plantarum, Enterococcus faecium, enzyme xylanase and chemical (43% formic acid, 30% ammonium formate, 10% propionic acid, 2% benzoic acid types on biogenic amines concentration, nutrient content, fermentation process, and microbiologic indicators in lucerne (Medicago sativa silage after 90 days of fermentation. The biological additive significantly (P < 0.05 increased putrescine (+51%, lactic acid (+11% and protein content (+11% in comparison with control silage. It significantly decreased cadaverine (−29%, histamine (−57%, spermidine (−15%, spermine (−55%, acetic acid (−40%, ethanol (−55%, ammonium (−25% and ash (−9%. After the chemical-additive treatment, greater amounts of histamine and tyramine were recorded. Significant decrease was observed in the concentrations of putrescine (−18%, cadaverine (−55%, spermidine (−47%, spermine (−45%, lactic acid (−16%, acetic acid (−46%, ammonium (−59%, ash (−13% and fat (−24%. Populations of bacteria associated with lactic acid fermentation, moulds, yeasts, enterobacteria and total microorganisms count were also influenced. Both biological and chemical additives can be highly recommended for producing high-quality silages meeting hygienic requirements. In lucerne silage, the chemical preservative showed a stronger effect in achieving the health safety of silage compared to the biological inoculant.

  15. Fungal spores overwhelm biogenic organic aerosols in a midlatitudinal forest

    Directory of Open Access Journals (Sweden)

    C. Zhu

    2016-06-01

    Full Text Available Both primary biological aerosol particles (PBAPs and oxidation products of biogenic volatile organic compounds (BVOCs contribute significantly to organic aerosols (OAs in forested regions. However, little is known about their relative importance in diurnal timescales. Here, we report biomarkers of PBAP and secondary organic aerosols (SOAs for their diurnal variability in a temperate coniferous forest in Wakayama, Japan. Tracers of fungal spores, trehalose, arabitol and mannitol, showed significantly higher levels in nighttime than daytime (p < 0.05, resulting from the nocturnal sporulation under near-saturated relative humidity. On the contrary, BVOC oxidation products showed higher levels in daytime than nighttime, indicating substantial photochemical SOA formation. Using tracer-based methods, we estimated that fungal spores account for 45 % of organic carbon (OC in nighttime and 22 % in daytime, whereas BVOC oxidation products account for 15 and 19 %, respectively. To our knowledge, we present for the first time highly time-resolved results that fungal spores overwhelmed BVOC oxidation products in contributing to OA especially in nighttime. This study emphasizes the importance of both PBAPs and SOAs in forming forest organic aerosols.

  16. Leishmanicidal Activity of Biogenic Fe₃O₄ Nanoparticles.

    Science.gov (United States)

    Khatami, Mehrdad; Alijani, Hajar; Sharifi, Iraj; Sharifi, Fatemeh; Pourseyedi, Shahram; Kharazi, Sam; Lima Nobre, Marcos Augusto; Khatami, Manouchehr

    2017-11-20

    Abstract : Due to the multiplicity of useful applications of metal oxide nanoparticles (ONPs) in medicine are growing exponentially, in this study, Fe₃O₄ (iron oxide) nanoparticles (IONPs) were biosynthesized using Rosemary to evaluate the leishmanicidal efficiency of green synthesized IONPs. This is the first report of the leishmanicidal efficiency of green synthesized IONPs against Leishmania major . The resulting biosynthesized IONPs were characterized by ultraviolet-visible spectroscopy (UV-Vis), X-ray diffraction (XRD), transmission electron microscopy (TEM), and Fourier transform infrared spectroscopy (FTIR). The leishmanicidal activity of IONPS was studied via 3-4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay. The results showed the fabrication of the spherical shape of monodisperse IONPs with a size 4 ± 2 nm. The UV-visible spectrophotometer absorption peak was at 334 nm. The leishmanicidal activity of biogenic iron oxide nanoparticles against Leishmania major (promastigote) was also studied. The IC 50 of IONPs was 350 µg/mL. In this report, IONPs were synthesized via a green method. IONPs are mainly spherical and homogeneous, with an average size of about 4 nm, and were synthesized here using an eco-friendly, simple, and inexpensive method.

  17. XENOBIOTICS AND BIOGENIC ELEMENTS IN RAW COW'S MILK

    Directory of Open Access Journals (Sweden)

    Agnieszka Greń

    2012-12-01

    Full Text Available Normal 0 21 false false false SK X-NONE X-NONE This paper presents the concentration some toxic and biogenic elements in milk from Nitra region. The aim of this investigation was to evaluate 30 samples of raw milk with fat contents 3.8% obtained from milk machine in the Nitra region. Samples were analyzed for metal contents using atomic absorption spectrophotometry (AAS. In comparison with maximum acceptable concentration for milk in the food codex of the Slovak republic, the level of contamination with cadmium was exceeded and reached the value 0.221 µg.ml-1. The copper content ranged from 1.201 µg.ml-1 to 5.810 µg.ml-1 and the average concentration reached 3.793 µg.ml-1.  Iron had an average of 1.824 µg.ml-1. Overall in all milk samples high correlations were found. Between positive correlation (0.7019 and negative correlation between of nickel and potassium concentration in raw milk (-0.72 was found. doi:10.5219/246

  18. Leishmanicidal Activity of Biogenic Fe3O4 Nanoparticles

    Directory of Open Access Journals (Sweden)

    Mehrdad Khatami

    2017-11-01

    Full Text Available Abstract: Due to the multiplicity of useful applications of metal oxide nanoparticles (ONPs in medicine are growing exponentially, in this study, Fe3O4 (iron oxide nanoparticles (IONPs were biosynthesized using Rosemary to evaluate the leishmanicidal efficiency of green synthesized IONPs. This is the first report of the leishmanicidal efficiency of green synthesized IONPs against Leishmania major. The resulting biosynthesized IONPs were characterized by ultraviolet-visible spectroscopy (UV-Vis, X-ray diffraction (XRD, transmission electron microscopy (TEM, and Fourier transform infrared spectroscopy (FTIR. The leishmanicidal activity of IONPS was studied via 3-4,5-dimethylthiazol-2-yl-2,5-diphenyltetrazolium bromide (MTT assay. The results showed the fabrication of the spherical shape of monodisperse IONPs with a size 4 ± 2 nm. The UV-visible spectrophotometer absorption peak was at 334 nm. The leishmanicidal activity of biogenic iron oxide nanoparticles against Leishmania major (promastigote was also studied. The IC50 of IONPs was 350 µg/mL. In this report, IONPs were synthesized via a green method. IONPs are mainly spherical and homogeneous, with an average size of about 4 nm, and were synthesized here using an eco-friendly, simple, and inexpensive method.

  19. Analysis of irradiated biogenic amines by computational chemistry and spectroscopy

    International Nuclear Information System (INIS)

    Oliveira, Jorge L.S.P.; Borges Junior, Itamar; Cardozo, Monique; Souza, Stefania P.; Lima, Antonio L.S.; Lima, Keila S.C.

    2011-01-01

    Biogenic Amines (B A) are nitrogenous compounds able to cause food poisoning. In this work, we studied the tyramine, one of the most common BA present in foods by combining experimental measured IR (Infrared) and GC/MS (Gas Chromatograph / Mass Spectrometry) spectra and computational quantum chemistry. Density Functional Theory (DFT) and the Deformed Atoms in Molecules (DMA) method was used to compute the partition the electronic densities in a chemically-intuitive way and electrostatic potentials of molecule to identify the acid and basic sites. Trading pattern was irradiated using a Cs 137 radiator, and each sample was identified by IR and GC/MS. Calculated and experimental IR spectra were compared. We observed that ionizing gamma irradiation was very effective in decreasing the population of standard amine, resulting in fragments that could be rationalized through the quantum chemistry calculations. In particular, we could locate the acid and basic sites of both molecules and identify possible sites of structural weaknesses, which allowed to propose mechanistic schemes for the breaking of chemical bonds by the irradiation. Moreover, from this work we hope it will be also possible to properly choose the dose of gamma irradiation which should be provided to eliminate each type of contamination. (author)

  20. Ambient Gas-Particle Partitioning of Tracers for Biogenic Oxidation

    Energy Technology Data Exchange (ETDEWEB)

    Isaacman-VanWertz, Gabriel; Yee, Lindsay D.; Kreisberg, Nathan M.; Wernis, Rebecca; Moss, Joshua A.; Hering, Susanne V.; de Sa, Suzanne; Martin, Scot T.; Alexander, Mikaela L.; Palm, Brett B.; Hu, Weiwei; Campuzano-Jost, Pedro; Day, Douglas; Jimenez, Jose L.; Riva, Matthieu; Surratt, Jason D.; Viegas, Juarez; Manzi, Antonio; Edgerton, Eric S.; Baumann, K.; Souza, Rodrigo A.; Artaxo, Paulo; Goldstein, Allen H.

    2016-08-23

    Exchange of atmospheric organic compounds between gas and particle phases is important in the production and chemistry of particle-phase mass but is poorly understood due to a lack of simultaneous measurements in both phases of individual compounds. Measurements of particle- and gas phase organic compounds are reported here for the southeastern United States and central Amazonia. Polyols formed from isoprene oxidation contribute 8% and 15% on average to particle-phase organic mass at these sites but are also observed to have substantial gas-phase concentrations contrary to many models that treat these compounds as nonvolatile. The results of the present study show that the gas-particle partitioning of approximately 100 known and newly observed oxidation products is not well explained by environmental factors (e.g., temperature). Compounds having high vapor pressures have higher particle fractions than expected from absorptive equilibrium partitioning models. These observations support the conclusion that many commonly measured biogenic oxidation products may be bound in low-volatility mass (e.g., accretion products, inorganic organic adducts) that decomposes to individual compounds on analysis. However, the nature and extent of any such bonding remains uncertain. Similar conclusions are reach for both study locations, and average particle fractions for a given compound are consistent within similar to 25% across measurement sites.

  1. Cryogenic Displacement and Accumulation of Biogenic Methane in Frozen Soils

    Directory of Open Access Journals (Sweden)

    Gleb Kraev

    2017-06-01

    Full Text Available Evidences of highly localized methane fluxes are reported from the Arctic shelf, hot spots of methane emissions in thermokarst lakes, and are believed to evolve to features like Yamal crater on land. The origin of large methane outbursts is problematic. Here we show, that the biogenic methane (13C ≤ −71‰ which formed before and during soil freezing is presently held in the permafrost. Field and experimental observations show that methane tends to accumulate at the permafrost table or in the coarse-grained lithological pockets surrounded by the sediments less-permeable for gas. Our field observations, radiocarbon dating, laboratory tests and theory all suggest that depending on the soil structure and freezing dynamics, this methane may have been displaced downwards tens of meters during freezing and has accumulated in the lithological pockets. The initial flux of methane from the one pocket disclosed by drilling was at a rate of more than 2.5 kg C(CH4 m−2 h−1. The age of the methane was 8–18 thousand years younger than the age of the sediments, suggesting that it was displaced tens of meters during freezing. The theoretical background provided the insight on the cryogenic displacement of methane in support of the field and experimental data. Upon freezing of sediments, methane follows water migration and either dissipates in the freezing soils or concentrates at certain places controlled by the freezing rate, initial methane distribution and soil structure.

  2. Pharmacological potential of biogenic amine–polyamine interactions beyond neurotransmission

    Science.gov (United States)

    Sánchez-Jiménez, F; Ruiz-Pérez, M V; Urdiales, J L; Medina, M A

    2013-01-01

    Histamine, serotonin and dopamine are biogenic amines involved in intercellular communication with multiple effects on human pathophysiology. They are products of two highly homologous enzymes, histidine decarboxylase and l-aromatic amino acid decarboxylase, and transmit their signals through different receptors and signal transduction mechanisms. Polyamines derived from ornithine (putrescine, spermidine and spermine) are mainly involved in intracellular effects related to cell proliferation and death mechanisms. This review summarizes structural and functional evidence for interactions between components of all these amine metabolic and signalling networks (decarboxylases, transporters, oxidases, receptors etc.) at cellular and tissue levels, distinct from nervous and neuroendocrine systems, where the crosstalk among these amine-related components can also have important pathophysiological consequences. The discussion highlights aspects that could help to predict and discuss the effects of intervention strategies. Linked Articles This article is part of a themed issue on Histamine Pharmacology Update. To view the other articles in this issue visit http://dx.doi.org/10.1111/bph.2013.170.issue-1 PMID:23347064

  3. Bounce behavior of freshly nucleated biogenic secondary organic aerosol particles

    Directory of Open Access Journals (Sweden)

    A. Virtanen

    2011-08-01

    Full Text Available The assessment of the climatic impacts and adverse health effects of atmospheric aerosol particles requires detailed information on particle properties. However, very limited information is available on the morphology and phase state of secondary organic aerosol (SOA particles. The physical state of particles greatly affects particulate-phase chemical reactions, and thus the growth rates of newly formed atmospheric aerosol. Thus verifying the physical phase state of SOA particles gives new and important insight into their formation, subsequent growth, and consequently potential atmospheric impacts. According to our recent study, biogenic SOA particles produced in laboratory chambers from the oxidation of real plant emissions as well as in ambient boreal forest atmospheres can exist in a solid phase in size range >30 nm. In this paper, we extend previously published results to diameters in the range of 17–30 nm. The physical phase of the particles is studied by investigating particle bounce properties utilizing electrical low pressure impactor (ELPI. We also investigate the effect of estimates of particle density on the interpretation of our bounce observations. According to the results presented in this paper, particle bounce clearly decreases with decreasing particle size in sub 30 nm size range. The comparison measurements by ammonium sulphate and investigation of the particle impaction velocities strongly suggest that the decreasing bounce is caused by the differences in composition and phase of large (diameters greater than 30 nm and smaller (diameters between 17 and 30 nm particles.

  4. Oxygen-isotope fractionation between marine biogenic silica and seawater

    Science.gov (United States)

    Matheney, Ronald K.; Knauth, L. Paul

    1989-12-01

    A stepwise fluorination technique has been used to selectively react away the water component of hydrous silica in order to better investigate the oxygen-isotope fractionation between biogenic opal and seawater, and to determine whether all taxa produce opal which is suitable for oxygen isotope paleothermometry. δ 18O of the tetrahedrally coordinated silicate oxygen of siliceous sponge spicules grown at a wide variety of temperatures varies independently of temperature. δ 18O from an Eocene radiolarian ooze sample is much more enriched than would be expected from any reasonable isotopic temperature curve, given the probable growing temperature of the sample. δ 18O of diatom samples seems to vary systematically with temperature and to conform approximately to the isotopic temperature curve for diatom frustules obtained by Labeyrie and coworkers using an entirely different analytical technique. Sponges appear to precipitate silica in isotopic disequilibrium with seawater oxygen, and old radiolarian silica may exchange readily with cold oceanic bottom water. Neither will apparently be useful for paleo-climate reconstructions. Diatoms may be useful in deducing ancient surface-water temperatures, but the systematic variation of α with temperature for diatoms may not be related to the quartz-H 2O equilibrium isotope fractionation.

  5. A marine biogenic source of atmospheric ice-nucleating particles

    Energy Technology Data Exchange (ETDEWEB)

    Wilson, T. W.; Ladino, L. A.; Alpert, Peter A.; Breckels, M. N.; Brooks, I. M.; Browse, J.; Burrows, Susannah M.; Carslaw, K. S.; Huffman, J. A.; Judd, C.; Kilthau, W. P.; Mason, R. H.; McFiggans, Gordon; Miller, L. A.; Najera, J.; Polishchuk, E. A.; Rae, S.; Schiller, C. L.; Si, M.; Vergara Temprado, J.; Whale, Thomas; Wong, J P S; Wurl, O.; Yakobi-Hancock, J. D.; Abbatt, JPD; Aller, Josephine Y.; Bertram, Allan K.; Knopf, Daniel A.; Murray, Benjamin J.

    2015-09-09

    The formation of ice in clouds is facilitated by the presence of airborne ice nucleating particles1,2. Sea spray is one of the major global sources of atmospheric particles, but it is unclear to what extent these particles are capable of nucleating ice3–11. Here we show that material in the sea surface microlayer, which is enriched in surface active organic material representative of that found in sub-micron sea- spray aerosol12–21, nucleates ice under conditions that occur in mixed-phase clouds and high-altitude ice clouds. The ice active material is likely biogenic and is less than ~0.2 ?m in size. We also show that organic material (exudate) released by a common marine diatom nucleates ice when separated from cells and propose that organic material associated with phytoplankton cell exudates are a candidate for the observed ice nucleating ability of the microlayer samples. By combining our measurements with global model simulations of marine organic aerosol, we show that ice nucleating particles of marine origin are dominant in remote marine environments, such as the Southern Ocean, the North Pacific and the North Atlantic.

  6. Assessing Biogenic Methane Content in Various Peatland Landforms Using GPR

    Science.gov (United States)

    Parsekian, A.; Comas, X.; Nolan, J.; Glaser, P.; Chanton, J.; Slater, L.

    2008-12-01

    Northern peatlands are known to be a source of biogenic methane, although efforts to accurately quantify their impact on the global carbon budget are ongoing. An important step towards a better understanding of the dynamics of methane releases to the atmosphere is to identify peatland landforms (i.e. raised bog, fen water track, open pools) where gas is accumulating in the subsurface compared to places where there is little subsurface methane. Additionally, it is important to identify areas of the vertical peat profile where high volumes of free-phase methane are present. In this study, we use ground penetrating radar (GPR) to acquire data on where free-phase gas (FPG) methane may be accumulating within the peat strata, and then make comparisons between various peatland landforms. 1-dimensional GPR common mid-point velocity analysis has been coupled with innovative subsurface gas sampling to identify the areas within northern peatlands that have significant gas trapped below confining layers in the subsurface. Gas samples are evaluated for total recovered volume and total methane concentration in order to support the GPR findings. Traditional 2-dimensional radar profiles were used to identify and estimate the depth at which laterally continuous woody confining layers are present, and therefore zones where gas can be expected to be found. By using 1-D, 2-D and direct sampling methods, it is now possible to identify potential areas of gas accumulation with a higher level of confidence.

  7. Emissions of biogenic sulfur gases from Alaskan tundra

    Science.gov (United States)

    Hines, Mark E.; Morrison, Michael C.

    1992-01-01

    Results of sulfur emission measurements made in freshwater and marine wetlands in Alaskan tundra during the Arctic Boundary Layer Expedition 2A (ABLE 3A) in July 1988 are presented. The data indicate that this type of tundra emits very small amounts of gaseous sulfur and, when extrapolated globally, accounts for a very small percentage of the global flux of biogenic sulfur to the atmosphere. Sulfur emissions from marine sites are up to 20-fold greater than fluxes from freshwater habitats and are dominated by dimethyl sulfide (DMS). Highest emissions, with a mean of 6.0 nmol/sq m/h, occurred in water-saturated wet meadow areas. In drier upland tundra sites, highest fluxes occurred in areas inhabited by mixed vegetation and labrador tea at 3.0 nmol/sq m/h and lowest fluxes were from lichen-dominated areas at 0.9 nmol/sq m/h. DMS was the dominant gas emitted from all these sites. Emissions of DMS were highest from intertidal soils inhabited by Carex subspathacea.

  8. PTR-MS in environmental research: biogenic VOCs

    International Nuclear Information System (INIS)

    Beauchamp, J.; Grabmer, W.; Graus, M.; Wisthaler, A.; Hansel, A.

    2004-01-01

    Proton-transfer-reaction mass spectrometry (PTR-MS) is a chemical ionization mass spectrometry technique that allows for on-line measurements of volatile organic compounds (VOCs) at pptV levels. This well established analytical tool has been used in a broad variety of research, including the investigation of VOCs in various foods (e.g. for quality control or food degradation studies), as well as being used as a tool for non-invasive medical diagnostics (e.g. human breath analysis). In addition to these fields of study, PTR-MS has been widely used in environmental research, from trace gas analysis in the troposphere to VOC emissions from plants. Participation in two field campaigns (BEWA and ECHO - both part of the German AFO 2000 program) by the Institute of Ion Physics involved a variety of investigations for monitoring biogenic emissions. These included the technique of disjunct eddy covariance for flux measurements above a forest canopy, C-13 carbon labelling experiments to follow carbon use in a plant, and stress-induced VOC emission investigations to gain understanding of how plants react to stress (e.g. ozone exposure). A selection of results from these investigations will be discussed in this presentation. (author)

  9. Emission and role of biogenic volatile organic compounds in biosphere

    International Nuclear Information System (INIS)

    Saleem, A.R.

    2013-01-01

    Plants are an essential part of the biosphere. Under the influence of climate change, plants respond in multiple ways within the ecosystem. One such way is the release of assimilated carbon back to the atmosphere in form of biogenic volatile organic compounds (BVOCs), which are produced by plants and are involved in plant growth, reproduction, defense and other . These compounds are emitted from vegetation into the atmosphere under different environmental situations. Plants produce an extensive range of BVOCs, including isoprenoids, sequisterpenes, aldehydes, alcohols and terpenes in different tissues above and below the ground. The emission rates vary with various environmental conditions and the plant growth stage in its life span.BVOCs are released under biotic and abiotic stress changes, like heat, drought, land-use changes, higher atmospheric CO concentrations, increased UV radiation and insect or disease attack. Plants emit BVOCs in atmosphere in order to avoid stress, and adapt to harsh circumstances. These compounds also have a significant role in plant-plant interaction, communication and competition. BVOCs have the ability to alter atmospheric chemistry; they readily react with atmospheric pollutant gases under high temperature and form tropospheric ozone, which is a potent air pollutant for global warming and disease occurrence. BVOCs may be a cause of photochemical smog and increase the stay of other GHGs in the atmosphere. Therefore, further study is required to assess the behavior of BVOCs in the biosphere as well as the atmosphere. (author)

  10. Photochemistry of biogenic emissions over the Amazon forest

    Science.gov (United States)

    Jacob, Daniel J.; Wofsy, Steven C.

    1988-01-01

    The boundary layer chemistry over the Amazon forest during the dry season is simulated with a photochemical model. Results are in good agreement with measurements of isoprene, NO, ozone, and organic acids. Photochemical reactions of biogenic isoprene and NOx can supply most of the ozone observed in the boundary layer. Production of ozone is very sensitive to the availability of NOx, but is insensitive to the isoprene source strength. High concentrations of total odd nitrogen (NOy) are predicted for the planetary boundary layer, about 1 ppb in the mixed layer and 0.75 ppb in the convective cloud layer. Most of the odd nitrogen is present as PAN-type species, which are removed by dry deposition to the forest. The observed daytime variations of isoprene are explained by a strong dependence of the isoprene emission flux on sun angle. Nighttime losses of isoprene exceed rates of reaction with NO3 and O3 and appear to reflect dry-deposition processes. The 24-hour averaged isoprene emission flux is calculated to be 38 mg/sq m per day. Photooxidation of isoprene could account for a large fraction of the CO enrichment observed in the boundary layer under unpolluted conditions and could constitute an important atmospheric source of formic acid, methacrylic acid, and pyruvic acid.

  11. Addressing biogenic greenhouse gas emissions from hydropower in LCA.

    Science.gov (United States)

    Hertwich, Edgar G

    2013-09-03

    The ability of hydropower to contribute to climate change mitigation is sometimes questioned, citing emissions of methane and carbon dioxide resulting from the degradation of biogenic carbon in hydropower reservoirs. These emissions are, however, not always addressed in life cycle assessment, leading to a bias in technology comparisons, and often misunderstood. The objective of this paper is to review and analyze the generation of greenhouse gas emissions from reservoirs for the purpose of technology assessment, relating established emission measurements to power generation. A literature review, data collection, and statistical analysis of methane and CO2 emissions are conducted. In a sample of 82 measurements, methane emissions per kWh hydropower generated are log-normally distributed, ranging from micrograms to 10s of kg. A multivariate regression analysis shows that the reservoir area per kWh electricity is the most important explanatory variable. Methane emissions flux per reservoir area are correlated with the natural net primary production of the area, the age of the power plant, and the inclusion of bubbling emissions in the measurement. Even together, these factors fail to explain most of the variation in the methane flux. The global average emissions from hydropower are estimated to be 85 gCO2/kWh and 3 gCH4/kWh, with a multiplicative uncertainty factor of 2. GHG emissions from hydropower can be largely avoided by ceasing to build hydropower plants with high land use per unit of electricity generated.

  12. Biogenic volatile organic compound emissions from vegetation fires.

    Science.gov (United States)

    Ciccioli, Paolo; Centritto, Mauro; Loreto, Francesco

    2014-08-01

    The aim of this paper was to provide an overview of the current state of the art on research into the emission of biogenic volatile organic compounds (BVOCs) from vegetation fires. Significant amounts of VOCs are emitted from vegetation fires, including several reactive compounds, the majority belonging to the isoprenoid family, which rapidly disappear in the plume to yield pollutants such as secondary organic aerosol and ozone. This makes determination of fire-induced BVOC emission difficult, particularly in areas where the ratio between VOCs and anthropogenic NOx is favourable to the production of ozone, such as Mediterranean areas and highly anthropic temperate (and fire-prone) regions of the Earth. Fire emissions affecting relatively pristine areas, such as the Amazon and the African savannah, are representative of emissions of undisturbed plant communities. We also examined expected BVOC emissions at different stages of fire development and combustion, from drying to flaming, and from heatwaves coming into contact with unburned vegetation at the edge of fires. We conclude that forest fires may dramatically change emission factors and the profile of emitted BVOCs, thereby influencing the chemistry and physics of the atmosphere, the physiology of plants and the evolution of plant communities within the ecosystem. © 2014 The Authors. Plant, Cell & Environment published by John Wiley & Sons Ltd.

  13. Modeling the dynamical sinking of biogenic particles in oceanic flow

    Directory of Open Access Journals (Sweden)

    P. Monroy

    2017-06-01

    Full Text Available We study the problem of sinking particles in a realistic oceanic flow, with major energetic structures in the mesoscale, focussing on the range of particle sizes and densities appropriate for marine biogenic particles. Our aim is to evaluate the relevance of theoretical results of finite size particle dynamics in their applications in the oceanographic context. By using a simplified equation of motion of small particles in a mesoscale simulation of the oceanic velocity field, we estimate the influence of physical processes such as the Coriolis force and the inertia of the particles, and we conclude that they represent negligible corrections to the most important terms, which are passive motion with the velocity of the flow, and a constant added vertical velocity due to gravity. Even if within this approximation three-dimensional clustering of particles can not occur, two-dimensional cuts or projections of the evolving three-dimensional density can display inhomogeneities similar to the ones observed in sinking ocean particles.

  14. Arabidopsis cpFtsY mutants exhibit pleiotropic defects including an inability to increase iron deficiency-inducible root Fe(III) chelate reductase activity.

    Science.gov (United States)

    Durrett, Timothy P; Connolly, Erin L; Rogers, Elizabeth E

    2006-08-01

    All plants, except for the grasses, must reduce Fe(III) to Fe(II) in order to acquire iron. In Arabidopsis, the enzyme responsible for this reductase activity in the roots is encoded by FRO2. Two Arabidopsis mutants, frd4-1 and frd4-2, were isolated in a screen for plants that do not induce Fe(III) chelate reductase activity in their roots in response to iron deficiency. frd4 mutant plants are chlorotic and grow more slowly than wild-type Col-0 plants. Additionally, frd4 chloroplasts are smaller in size and possess dramatically fewer thylakoid membranes and grana stacks when compared with wild-type chloroplasts. frd4 mutant plants express both FRO2 and IRT1 mRNA normally in their roots under iron deficiency, arguing against any defects in systemic iron-deficiency signaling. Further, transgenic frd4 plants accumulate FRO2-dHA fusion protein under iron-deficient conditions, suggesting that the frd4 mutation acts post-translationally in reducing Fe(III) chelate reductase activity. FRO2-dHA appears to localize to the plasma membrane of root epidermal cells in both Col-0 and frd4-1 transgenic plants when grown under iron-deficient conditions. Map-based cloning revealed that the frd4 mutations reside in cpFtsY, which encodes a component of one of the pathways responsible for the insertion of proteins into the thylakoid membranes of the chloroplast. The presence of cpFtsY mRNA and protein in the roots of wild-type plants suggests additional roles for this protein, in addition to its known function in targeting proteins to the thylakoid membrane in chloroplasts.

  15. 43 CFR 19.8 - Prospecting, mineral locations, mineral patents, and mineral leasing within National Forest...

    Science.gov (United States)

    2010-10-01

    ... patents, and mineral leasing within National Forest Wilderness. 19.8 Section 19.8 Public Lands: Interior... § 19.8 Prospecting, mineral locations, mineral patents, and mineral leasing within National Forest... locations, mineral patents, and mineral leasing within National Forest Wilderness are contained in parts...

  16. Synthesis, structure and magnetic properties of a new one-dimensional iron phosphite, $[fe^{III}(1,10-phenanthroline)(HPO_{3})(H_{2}PO_{3})]$

    OpenAIRE

    Mandal, Sukhendu; Green, Mark A; Natarajan, Srinivasan

    2005-01-01

    A new iron phosphite, $[fe^{III}(1,10-phenanthroline)(HPO_{3})(H_{2}PO_{3})]$,1, has been synthesized hydrothermally from a mixture containing iron powder, phosphorous acid, 1,10-phenanthroline and water at 125 degrees C for 7 days. The structure consists of an edge-shared four-membered rings formed by the connectivity between $FeO_{4}N_{2}$ octahedra and pseudo pyramidal $HPO_{3}$ units, connected through their edges forming a one-dimensional structure. The 1,10-phenanthroline molecules and ...

  17. Direct Involvement of ombB, omaB and omcB Genes in Extracellular Reduction of Fe(III by Geobacter sulfurreducens PCA

    Directory of Open Access Journals (Sweden)

    Yimo eLiu

    2015-10-01

    Full Text Available The tandem gene clusters orfR-ombB-omaB-omcB and orfS-ombC-omaC-omcC of the metal-reducing bacterium Geobacter sulfurreducens PCA are responsible for trans-outer membrane electron transfer during extracellular reduction of Fe(III-citrate and ferrihydrite [a poorly crystalline Fe(III oxide]. Each gene cluster encodes a putative transcriptional factor (OrfR/OrfS, a porin-like outer-membrane protein (OmbB/OmbC, a periplasmic c-type cytochrome (c-Cyt, OmaB/OmaC and an outer-membrane c-Cyt (OmcB/OmcC. The individual roles of OmbB, OmaB and OmcB in extracellular reduction of Fe(III, however, have remained either uninvestigated or controversial. Here, we showed that replacements of ombB, omaB, omcB and ombB-omaB with an antibiotic gene in the presence of ombC-omaC-omcC had no impact on reduction of Fe(III-citrate by G. sulfurreducens PCA. Disruption of ombB, omaB, omcB and ombB-omaB in the absence of ombC-omaC-omcC, however, severely impaired the bacterial ability to reduce Fe(III-citrate as well as ferrihydrite. These results unequivocally demonstrate an overlapping role of ombB-omaB-omcB and ombC-omaC-omcC in extracellular Fe(III reduction by G. sulfurreducens PCA. Involvement of both ombB-omaB-omcB and ombC-omaC-omcC in extracellular Fe(III reduction reflects the importance of these trans-outer membrane protein complexes in the physiology of this bacterium. Moreover, the kinetics of Fe(III-citrate and ferrihydrite reduction by these mutants in the absence of ombC-omaC-omcC were nearly identical, which suggests that absence of any protein subunit eliminates function of OmaB/OmbB/OmcB protein complex. Finally, orfS was found to have a negative impact on the extracellular reduction of Fe(III-citrate and ferrihydrite in G. sulfurreducens PCA probably by serving as a transcriptional repressor.

  18. Propiedades de los iones Fe(II) y Fe(III) en disolución. Reacciones con reactivos generales y especiales. Ensayos de identificación.

    OpenAIRE

    Milla González, Miguel

    2015-01-01

    Se muestran las características analíticas de los cationes Fe(II) y Fe(III) en disolución presentando las reacciones químicas de los mismos frente a los reactivos generales y a los reactivos especiales. Estas reacciones van acompañadas de fotos que permiten apreciar los cambios de colores de las disoluciones y precipitados que aparecen en la disolución de ensayo. La descriptiva finaliza con pruebas de identificación de cada ión en ausencia de especies interferentes.

  19. Oceanic minerals: their origin, nature of their environment, and significance.

    Science.gov (United States)

    Kastner, M

    1999-03-30

    The chemical and isotopic compositions of oceanic biogenic and authigenic minerals contain invaluable information on the evolution of seawater, hence on the history of interaction between tectonics, climate, ocean circulation, and the evolution of life. Important advances and greater understanding of (a) key minor and trace element cycles with various residence times, (b) isotopic sources and sinks and fractionation behaviors, and (c) potential diagenetic problems, as well as developments in high-precision instrumentation, recently have been achieved. These advances provided new compelling evidence that neither gradualism nor uniformitarianism can explain many of the new important discoveries obtained from the chemistry and isotopic compositions of oceanic minerals. Presently, the best-developed geochemical proxies in biogenic carbonates are 18O/16O and Sr/Ca ratios (possibly Mg/Ca) for temperature; 87Sr/86Sr for input sources, Cd/Ca and Ba/Ca ratios for phosphate and alkalinity concentrations, respectively, thus also for ocean circulation; 13C/12C for ocean productivity; B isotopes for seawater pH;, U, Th isotopes, and 14C for dating; and Sr and Mn concentrations for diagenesis. The oceanic authigenic minerals most widely used for chemical paleoceanography are barite, evaporite sulfates, and hydrogenous ferromanganese nodules. Marine barite is an effective alternative monitor of seawater 87Sr/86Sr, especially where carbonates are diagenetically altered or absent. It also provides a high-resolution record of seawater sulfate S isotopes, (evaporite sulfates only carry an episodic record), with new insights on factors affecting the S and C cycles and atmospheric oxygen. High-resolution studies of Sr, Nd, and Pb isotopes of well-dated ferromanganese nodules contain invaluable records on climate driven changes in oceanic circulation.

  20. Biogenic scorodite crystallization by Acidianus sulfidivorans for arsenic removal

    NARCIS (Netherlands)

    Gonzalez-Contreras, P.A.; Weijma, J.; Weijden, van der R.D.; Buisman, C.J.N.

    2010-01-01

    Scorodite is an arsenic mineral with the chemical formula FeAsO4·2H2O. It is the most common natural arsenate associated with arsenic-bearing ore deposits. In the present study we show that the thermoacidophilic iron-oxidizing archaeon Acidianus sulfidivorans is able to precipitate scorodite in the

  1. Evaluation of biogenic amines levels, and biochemical and microbiological characterization of Italian-type salami sold in Rio de Janeiro, Brazil

    Directory of Open Access Journals (Sweden)

    Luiz Felipe Lopes dos Santos

    2015-08-01

    Full Text Available The objective of the present study was to evaluate the levels of biogenic amines (cadaverine, putrescine, tyramine, histamine, spermidine and spermine by high performance liquid chromatography (HPLC and the physicochemical (moisture, lipids, proteins, pH, water activity and fixed mineral residue and microbiological (lactic acid bacteria and aerobic heterotrophic mesophilic bacteria count characteristics of six Italian-type salami brands sold in the city of Niteroi (Rio de Janeiro, Brazil. The salami showed lactic acid bacteria count from 5.7 to 8.6 CFU•mL-1, and heterotrophic mesophilic bacteria count from 5.8 to 8.7 CFU•mL-1. Three brands showed moisture contents above 35% and one brand had protein content below 25%. The mean values obtained for the amines were: 197.43, 143.29, 73.02, 4.52, 90.66 and 36.17 mg•kg-1 for tyramine, putrescine, cadaverine, spermidine, histamine, and spermine respectively. Two brands presented histamine contents above the legal limit established in 100 mg•kg-1. We concluded that the evaluated salami presented a wide variation in the count of the bacterial groups with a predominance of lactic acid bacteria. The moisture contents indicate insufficient drying before commercialization and protein content had values below the minimum limit determined by the Brazilian legislation. Finally, the levels of biogenic amines found could cause adverse reactions in susceptible consumers, depending of the amount and frequency of intake of these products.

  2. An approach for verifying biogenic greenhouse gas emissions inventories with atmospheric CO2 concentration data

    International Nuclear Information System (INIS)

    Ogle, Stephen M; Davis, Kenneth; Lauvaux, Thomas; Miles, Natasha L; Richardson, Scott; Schuh, Andrew; Cooley, Dan; Breidt, F Jay; West, Tristram O; Heath, Linda S; Smith, James E; McCarty, Jessica L; Gurney, Kevin R; Tans, Pieter; Denning, A Scott

    2015-01-01

    Verifying national greenhouse gas (GHG) emissions inventories is a critical step to ensure that reported emissions data to the United Nations Framework Convention on Climate Change (UNFCCC) are accurate and representative of a country’s contribution to GHG concentrations in the atmosphere. Furthermore, verifying biogenic fluxes provides a check on estimated emissions associated with managing lands for carbon sequestration and other activities, which often have large uncertainties. We report here on the challenges and results associated with a case study using atmospheric measurements of CO 2 concentrations and inverse modeling to verify nationally-reported biogenic CO 2 emissions. The biogenic CO 2 emissions inventory was compiled for the Mid-Continent region of United States based on methods and data used by the US government for reporting to the UNFCCC, along with additional sources and sinks to produce a full carbon balance. The biogenic emissions inventory produced an estimated flux of −408 ± 136 Tg CO 2 for the entire study region, which was not statistically different from the biogenic flux of −478 ± 146 Tg CO 2 that was estimated using the atmospheric CO 2 concentration data. At sub-regional scales, the spatial density of atmospheric observations did not appear sufficient to verify emissions in general. However, a difference between the inventory and inversion results was found in one isolated area of West-central Wisconsin. This part of the region is dominated by forestlands, suggesting that further investigation may be warranted into the forest C stock or harvested wood product data from this portion of the study area. The results suggest that observations of atmospheric CO 2 concentration data and inverse modeling could be used to verify biogenic emissions, and provide more confidence in biogenic GHG emissions reporting to the UNFCCC. (letter)

  3. Impact of biogenic terpene emissions from Brassica napus on tropospheric ozone over Saxony (Germany): numerical investigation.

    Science.gov (United States)

    Renner, Eberhard; Münzenberg, Annette

    2003-01-01

    The role of biogenic emissions in tropospheric ozone production is currently under discussion and major aspects are not well understood yet. This study aims towards the estimation of the influence of biogenic emissions on tropospheric ozone concentrations over Saxony in general and of biogenic emissions from brassica napus in special. MODELLING TOOLS: The studies are performed by utilizing a coupled numerical modelling system consisting of the meteorological model METRAS and the chemistry transport model MUSCAT. For the chemical part, the Euro-RADM algorithm is used. EMISSIONS: Anthropogenic and biogenic emissions are taken into account. The anthropogenic emissions are introduced by an emission inventory. Biogenic emissions, VOC and NO, are calculated within the chemical transport model MUSCAT at each time step and in each grid cell depending on land use type and on the temperature. The emissions of hydrocarbons from forest areas as well as biogenic NO especially from agricultural grounds are considered. Also terpene emissions from brassica napus fields are estimated. SIMULATION SETUP AND METEOROLOGICAL CONDITIONS: The simulations were performed over an area with an extension of 160 x 140 km2 which covers the main parts of Saxony and neighboring areas of Brandenburg, Sachsen-Anhalt and Thuringia. Summer smog with high ozone concentrations can be expected during high pressure conditions on hot summer days. Typical meteorological conditions for such cases were introduced in an conceptual way. It is estimated that biogenic emissions change tropospheric ozone concentrations in a noticeable way (up to 15% to 20%) and, therefore, should not be neglected in studies about tropospheric ozone. Emissions from brassica napus do have a moderate potential to enhance tropospheric ozone concentrations, but emissions are still under consideration and, therefore, results vary to a high degree. Summing up, the effect of brassica napus terpene emissions on ozone concentrations is

  4. Hyperspectral observation of anthropogenic and biogenic pollution in coastal zone

    Science.gov (United States)

    Lavrova, Olga; Loupian, Evgeny; Mityagina, Marina; Uvarov, Ivan

    The work presents results of anthropogenic and biogenic pollution detection in coastal zones of the Black and Caspian Seas based on satellite hyperspetral data provided by the Hyperion and HICO instruments. Techniques developed on the basis of the analysis of spectral characteristics calculated in special points were employed to address the following problems: (a) assessment of the blooming intensity of cyanobacteria and their distribution in bays of western Crimea and discrimination between anthropogenic pollutant discharge events and algae bloom; (b) detection of anthropogenic pollution in Crimean lakes utilized as industrial liquid discharge reservoirs; (c) detection of oil pollution in areas of shelf oil production in the Caspian Sea. Information values of different spectral bands and their composites were estimated in connection with the retrieval of the main sea water components: phytoplankton, suspended matter and colored organic matter, and also various anthropogenic pollutants, including oil. Software tools for thematic hyperspectral data processing in application to the investigation of sea coastal zones and internal water bodies were developed on the basis of the See the Sea geoportal created by the Space Research Institute RAS. The geoportal is focused on the study of processes in the world ocean with the emphasis on the advantages of satellite systems of observation. The tools that were introduced into the portal allow joint analysis of quasi-simultaneous satellite data, in particular data from the Hyperion, HICO, OLI Landsat-8, ETM Landsat-7 and TM Landsat-5 instruments. Results of analysis attempts combining data from different sensors are discussed. Their strong and weak points are highlighted. The study was completed with partial financial support from The Russian Foundation for Basic Research grants # 14-05-00520-a and 13-07-12017.

  5. Mineral commodity summaries 2016

    Science.gov (United States)

    Ober, Joyce A.

    2016-01-01

    This report is the earliest Government publication to furnish estimates covering 2015 nonfuel mineral industry data. Data sheets contain information on the domestic industry structure, Government programs, tariffs, and 5-year salient statistics for more than 90 individual minerals and materials

  6. Vitamins, Minerals, and Mood

    Science.gov (United States)

    Kaplan, Bonnie J.; Crawford, Susan G.; Field, Catherine J.; Simpson, J. Steven A.

    2007-01-01

    In this article, the authors explore the breadth and depth of published research linking dietary vitamins and minerals (micronutrients) to mood. Since the 1920s, there have been many studies on individual vitamins (especially B vitamins and Vitamins C, D, and E), minerals (calcium, chromium, iron, magnesium, zinc, and selenium), and vitamin-like…

  7. Mineral Commodity Summaries 2011

    Science.gov (United States)

    ,

    2011-01-01

    Each chapter of the 2011 edition of the U.S. Geological Survey (USGS) Mineral Commodity Summaries (MCS) includes information on events, trends, and issues for each mineral commodity as well as discussions and tabular presentations on domestic industry structure, Government programs, tariffs, 5-year salient statistics, and world production and resources. The MCS is the earliest comprehensive source of 2010 mineral production data for the world. More than 90 individual minerals and materials are covered by two-page synopses. For mineral commodities for which there is a Government stockpile, detailed information concerning the stockpile status is included in the two-page synopsis. Mineral Commodity Summaries 2011 contains new chapters on iron oxide pigments, wollastonite, and zeolites. The chapters on mica (natural), scrap and flake and mica (natural), sheet have been combined into a single chapter - mica (natural). Abbreviations and units of measure, and definitions of selected terms used in the report, are in Appendix A and Appendix B, respectively. "Appendix C - Reserves and Resources" has been divided into "Part A - Resource/Reserve Classification for Minerals" and "Part B - Sources of Reserves Data," including some information that was previously in this introduction. A directory of USGS minerals information country specialists and their responsibilities is Appendix D. The USGS continually strives to improve the value of its publications to users. Constructive comments and suggestions by readers of the MCS 2011 are welcomed.

  8. Mineral commodity summaries 2018

    Science.gov (United States)

    Ober, Joyce A.

    2018-01-31

    This report is the earliest Government publication to furnish estimates covering 2017 nonfuel mineral industry data. Data sheets contain information on the domestic industry structure, Government programs, tariffs, and 5-year salient statistics for more than 90 individual minerals and materials.

  9. Detoxification of Pesticide-Containing Wastewater with FeIII, Activated Carbon and Fenton Reagent and Its Control Using Three Standardized Bacterial Inhibition Tests

    Directory of Open Access Journals (Sweden)

    Eduard Rott

    2017-12-01

    Full Text Available Discharge of toxic industrial wastewaters into biological wastewater treatment plants may result in inhibition of activated sludge bacteria (ASB. In order to find an appropriate method of detoxification, the wastewater of a pesticide-processing plant in Vietnam was treated with three different methods (FeIII, powdered activated carbon (PAC, Fenton (FeII/H2O2 analyzing the detoxification effect with the nitrification inhibition test (NIT, respiration inhibition test (RIT and luminescent bacteria test (LBT. The heterotrophic ASB were much more resistant to the wastewater than the autotrophic nitrificants. The NIT turned out to be more suitable than the RIT since the NIT was less time-consuming and more reliable. In addition, the marine Aliivibrio fischeri were more sensitive than the nitrificants indicating that a lack of inhibition in the very practical and time-efficient LBT correlates with a lack of nitrification inhibition. With 95%, the Fenton method showed the highest efficiency regarding the chemical oxygen demand (COD removal. Although similar COD removal (60–65% was found for both the FeIII and the PAC method, the inhibitory effect of the wastewater was reduced much more strongly with PAC. Both the NIT and the LBT showed that the PAC and Fenton methods led to a similar reduction in the inhibitory effect.

  10. Radiotracer study of the adsorption of Fe(III), Cr(III) and Cd(II) on natural and chemically modified Slovak zeolite

    International Nuclear Information System (INIS)

    Foeldesova, M.; Dillinger, P.; Lukac, P.

    1998-01-01

    In order to minimize the contamination of environment with metals in ionic form the more types of natural and chemically modified zeolites were examined to their uptake of Fe(III), Cr(III) and Cd(II) from water solutions by batch radio-exchange equilibration method. In this study was used zeolitic tuff from deposit Nizny Hrabovec (content of clinoptilolite 50-70%) with the grain size from 1.2 to 2.2 mm. The granules of zeolite were modified with the following NaOH solutions: ).5, 1, 2 and 4 mol.l -1 at 80 grad C for 4 hours. The sorption of Fe, Cr and Cd ions on all types of zeolites was studied by radio-exchange method and the sorption of Fe and Cr also flame atomic absorption method. From sorption curves the sorption coefficients were calculated. The results obtained in this work show that zeolites modified with NaOH solution are suitable for adsorption of Fe(III), Cr(III) and Cd(II) from underwater, waste water, feed water and coolant water from nuclear plants. The adsorbed zeolites can be solidified by conventional way

  11. Mineral industry in Australia

    International Nuclear Information System (INIS)

    Parbo, S.A.

    1982-01-01

    The paper reviews the history and growth of the mineral industry in Australia and its significance to the nation's economic growth and overseas trade, particularly over the last twenty years during which time production of coal, iron ore, manganese and mineral sands has increased greatly and new discoveries of petroleum, bauxite and nickel have given rise to major new industries. Australia ranks fourteenths in the value of world trade and is among the world's largest exporters of alumina, iron ore, mineral sands, coal, lead, zinc and nickel. Some details of production, processing and exports of the major minerals are given. Comment is made on the policies and roles of the six State Governments and the Federal Government in respect of ownership and control of the mining, processing and exporting of both energy and non-energy minerals. (orig.) [de

  12. Membranes and pathophysiological mineralization.

    Science.gov (United States)

    Roszkowska, Monika; Strzelecka-Kiliszek, Agnieszka; Magne, David; Pikula, Slawomir; Bessueille, Laurence

    Vascular calcification accompanies the pathological process of atherosclerotic plaque formation. Artery calcification results from trans-differentiation of vascular smooth muscle cells (VSMCs) into cells resembling mineralization-competent cells such as osteoblasts and chondrocytes. The activity of tissue-nonspecific alkaline phosphatase (TNAP), a GPI-anchored enzyme necessary for physiological mineralization, is induced in VSMCs in response to inflammation. TNAP achieves its mineralizing function being anchored to plasma membrane of mineralizing cells and to the surface of their derived matrix vesicles (MVs), and numerous important reports indicate that membranes play a crucial role in initiating the crystal formation. In this review, we would like to highlight various functions of lipids and proteins associated to membranes at different stages of both physiological mineralization and vascular calcification, with an emphasis on the pathological process of atherosclerotic plaque formation.

  13. Taxation of unmined minerals

    International Nuclear Information System (INIS)

    Bremberg, B.P.

    1989-01-01

    This paper reports on the Kentucky Revenue Cabinet which began implementing its controversial unmined minerals tax program. The Revenue Cabinet should complete its first annual assessment under this program in December, 1989. The Revenue Cabinet's initial efforts to collect basic data concerning the Commonwealth's coal bearing lands has yielded data coverage for 5 million of Kentucky's 10 million acres of coal lands. Approximately 1000 detailed information returns have been filed. The returns will be used to help create an undeveloped mineral reserves inventory, determine mineral ownership, and value mineral reserves. This new program is run by the Revenue Cabinet's Mineral Valuation Section, under the Division of Technical Support, Department of Property Taxation. It has been in business since September of 1988

  14. Marine Mineral Exploration

    DEFF Research Database (Denmark)

    The past 20 years have seen extensive marine exploration work by the major industrialized countries. Studies have, in part, been concentrated on Pacific manganese nodule occurrences and on massive sulfides on mid-oceanic ridges. An international jurisdictional framework of the sea-bed mineral...... resources was negotiated by the United Nations Conference on the Law of the Sea (UNCLOS III). A most important outcome of this conference was the establishment of an Exclusive Economic Zone (EEZ) of at least 200 nautical miles for all coastal states and the recognition of a deep-sea regime. Mineral deposits...... in EEZ areas are fairly unknown; many areas need detailed mapping and mineral exploration, and the majority of coastal or island states with large EEZ areas have little experience in exploration for marine hard minerals. This book describes the systematic steps in marine mineral exploration...

  15. Impact of biogenic emissions on ozone formation in the Mediterranean area - a BEMA modelling study

    International Nuclear Information System (INIS)

    Thunis, P.; Cuvelier, C.

    2000-01-01

    The aim of this modelling study is to understand and quantify the influence of biogenic volatile organic compound (BVOC) emissions on the formation of tropospheric ozone in the Burriana area (north of Valencia) on the east coast of Spain. The mesoscale modelling system used consists of the meteorology/transport module TVM and the chemical reaction mechanism RACM. The results of the model simulations are validated and compared with the data collected during the biogenic emissions in the mediterranean area (BEMA) field campaign that took place in June 1997. Anthropogenic and biogenic emission inventories have been constructed with an hourly resolution. Averaged (over the land area and over 24 h) emission fluxes for AVOC, anthropogenic NO x , BVOC and biogenic NO x are given by 16.0, 9.9, 6.2, and 0.7 kg km -2 day -1 , respectively. The impact of biogenic emissions is investigated on peak ozone values by performing simulations with and without biogenic emissions; while keeping anthropogenic emissions constant. The impact on ozone formation is also studied in combination with some anthropogenic emissions reduction strategies, i.e. when anthropogenic VOC emissions and/or NO x emissions are reduced. A factor separation technique is applied to isolate the impact due to biogenic emissions from the overall impact due to biogenic and anthropogenic emissions together. The results indicate that the maximum impact of biogenic emissions on ozone formation represents at the most 10 ppb, while maximum ozone values are of the order of 100 ppb. At different locations the maximum impact is reached at different times of the day depending on the arrival time of the sea breeze. It is also shown that this impact does not coincide in time with the maximum simulated ozone concentrations that are reached over the day. By performing different emission reduction scenarios, BVOC impacts are found to be sensitive mainly to NO x , and not to AVOC. Finally, it is shown that amongst the various

  16. Biogenicity and Syngeneity of Organic Matter in Ancient Sedimentary Rocks: Recent Advances in the Search for Evidence of Past Life

    Energy Technology Data Exchange (ETDEWEB)

    Oehler, Dorothy Z.; Cady, Sherry L.

    2014-12-01

    he past decade has seen an explosion of new technologies for assessment of biogenicity and syngeneity of carbonaceous material within sedimentary rocks. Advances have been made in techniques for analysis of in situ organic matter as well as for extracted bulk samples of soluble and insoluble (kerogen) organic fractions. The in situ techniques allow analysis of micrometer-to-sub-micrometer-scale organic residues within their host rocks and include Raman and fluorescence spectroscopy/imagery, confocal laser scanning microscopy, and forms of secondary ion/laser-based mass spectrometry, analytical transmission electron microscopy, and X-ray absorption microscopy/spectroscopy. Analyses can be made for chemical, molecular, and isotopic composition coupled with assessment of spatial relationships to surrounding minerals, veins, and fractures. The bulk analyses include improved methods for minimizing contamination and recognizing syngenetic constituents of soluble organic fractions as well as enhanced spectroscopic and pyrolytic techniques for unlocking syngenetic molecular signatures in kerogen. Together, these technologies provide vital tools for the study of some of the oldest and problematic carbonaceous residues and for advancing our understanding of the earliest stages of biological evolution on Earth and the search for evidence of life beyond Earth. We discuss each of these new technologies, emphasizing their advantages and disadvantages, applications, and likely future directions.

  17. Enhanced 99 Tc retention in glass waste form using Tc(IV)-incorporated Fe minerals

    Energy Technology Data Exchange (ETDEWEB)

    Um, Wooyong; Luksic, Steven A.; Wang, Guohui; Saslow, Sarah; Kim, Dong-Sang; Schweiger, Michael J.; Soderquist, Chuck Z.; Bowden, Mark E.; Lukens, Wayne W.; Kruger, Albert A.

    2017-11-01

    Technetium (99Tc) immobilization by doping into iron oxide mineral phases may alleviate the problems with Tc volatility during vitrification of nuclear waste. Reduced Tc, Tc(IV), substitutes for Fe(III) in the crystal structure by a process of Tc reduction from Tc(VII) to Tc(IV) followed by co-precipitation of Fe oxide minerals. Two Tc-incorporated Fe minerals (Tc-goethite and Tc-magnetite/maghemite) were prepared and tested for Tc retention in glass melt samples at temperatures between 600 – 1,000 oC. After being cooled, the solid glass specimens prepared at different temperatures were analyzed for Tc oxidation state using Tc K-edge XANES. In most samples, Tc was partially oxidized from Tc(IV) to Tc(VII) as the melt temperature increased. However, Tc retention in glass melt samples prepared using Tc-incorporated Fe minerals were moderately higher than in glass prepared using KTcO4 because of limited and delayed Tc volatilization.

  18. Cr(VI) and azo dye removal using a hollow-fibre membrane system functionalized with a biogenic Pd-magnetite catalyst.

    Science.gov (United States)

    Coker, V S; Garrity, A; Wennekes, W B; Roesink, H D W; Cutting, R S; Lloyd, J R

    2014-01-01

    This study investigates the application of a hybrid system combining hollow-fibre membrane technology with the reductive abilities of magnetic nanoparticles for the remediation of toxic Cr(VI) and the azo dye, Remazol Black B. Nano-scale biogenic magnetite (Fe3O4), formed by microbial reduction of the mineral ferrihydrite, has a high reductive capacity due to the presence of Fe(II) in the mineral structure. The magnetic nanoparticles (approximately 20 nm) can be arrayed with Pd0 nanoparticles (approximately 5 nm) making a catalytically active nanomaterial. Membrane units, with and without nanoparticles, were challenged with either Cr(VI) or azo dye and some were supplemented with sodium formate, as an electron donor for contaminant reduction promoted by the Pd. The combination of Pd-magnetite with formate resulted in the most effective remediation strategy for both contaminants and the lifetime of the membrane unit was also increased, with 55% (19 days) and 70% (23 days) removal of the azo dye and Cr(VI), respectively. Low flow rates of 0.1 ml/min resulted in improved efficiencies due to increased contact time with the membrane/nanoparticle unit, with 70-75% removal of each contaminant. Chemical analyses of the nanoparticles post-exposure to Cr(VI) in the membrane modules indicated Pd to be more oxidized when Cr removal was maximized, and that the Cr was partially reduced to Cr(III) at the surface of the magnetite. These results have demonstrated that hollow-fibre membrane units can be enhanced for the removal of soluble, redox sensitive contaminants by incorporation of a layer of palladized biogenic nanoparticulate magnetite.

  19. Safety assessment of the biogenic amines in fermented soya beans and fermented bean curd.

    Science.gov (United States)

    Yang, Juan; Ding, Xiaowen; Qin, Yingrui; Zeng, Yitao

    2014-08-06

    To evaluate the safety of biogenic amines, high performance liquid chromatography (HPLC) was used to evaluate the levels of biogenic amines in fermented soya beans and fermented bean curd. In fermented soya beans, the total biogenic amines content was in a relatively safe range in many samples, although the concentration of histamine, tyramine, and β-phenethylamine was high enough in some samples to cause a possible safety threat, and 8 of the 30 samples were deemed unsafe. In fermented bean curd, the total biogenic amines content was more than 900 mg/kg in 19 white sufu amples, a level that has been determined to pose a safety hazard; putrescine was the only one detected in all samples and also had the highest concentration, which made samples a safety hazard; the content of tryptamine, β-phenethylamine, tyramine, and histamine had reached the level of threat to human health in some white and green sufu samples, and that may imply another potential safety risk; and 25 of the 33 samples were unsafe. In conclusion, the content of biogenic amines in all fermented soya bean products should be studied and appropriate limits determined to ensure the safety of eating these foods.

  20. Control of biogenic amines in food--existing and emerging approaches.

    Science.gov (United States)

    Naila, Aishath; Flint, Steve; Fletcher, Graham; Bremer, Phil; Meerdink, Gerrit

    2010-09-01

    Biogenic amines have been reported in a variety of foods, such as fish, meat, cheese, vegetables, and wines. They are described as low molecular weight organic bases with aliphatic, aromatic, and heterocyclic structures. The most common biogenic amines found in foods are histamine, tyramine, cadaverine, 2-phenylethylamine, spermine, spermidine, putrescine, tryptamine, and agmatine. In addition octopamine and dopamine have been found in meat and meat products and fish. The formation of biogenic amines in food by the microbial decarboxylation of amino acids can result in consumers suffering allergic reactions, characterized by difficulty in breathing, itching, rash, vomiting, fever, and hypertension. Traditionally, biogenic amine formation in food has been prevented, primarily by limiting microbial growth through chilling and freezing. However, for many fishing based subsistence populations, such measures are not practical. Therefore, secondary control measures to prevent biogenic amine formation in foods or to reduce their levels once formed need to be considered as alternatives. Such approaches to limit microbial growth may include hydrostatic pressures, irradiation, controlled atmosphere packaging, or the use of food additives. Histamine may potentially be degraded by the use of bacterial amine oxidase or amine-negative bacteria. Only some will be cost-effective and practical for use in subsistence populations.

  1. Control of Biogenic Amines in Food—Existing and Emerging Approaches

    Science.gov (United States)

    Naila, Aishath; Flint, Steve; Fletcher, Graham; Bremer, Phil; Meerdink, Gerrit

    2010-01-01

    Biogenic amines have been reported in a variety of foods, such as fish, meat, cheese, vegetables, and wines. They are described as low molecular weight organic bases with aliphatic, aromatic, and heterocyclic structures. The most common biogenic amines found in foods are histamine, tyramine, cadaverine, 2-phenylethylamine, spermine, spermidine, putrescine, tryptamine, and agmatine. In addition octopamine and dopamine have been found in meat and meat products and fish. The formation of biogenic amines in food by the microbial decarboxylation of amino acids can result in consumers suffering allergic reactions, characterized by difficulty in breathing, itching, rash, vomiting, fever, and hypertension. Traditionally, biogenic amine formation in food has been prevented, primarily by limiting microbial growth through chilling and freezing. However, for many fishing based subsistence populations, such measures are not practical. Therefore, secondary control measures to prevent biogenic amine formation in foods or to reduce their levels once formed need to be considered as alternatives. Such approaches to limit microbial growth may include hydrostatic pressures, irradiation, controlled atmosphere packaging, or the use of food additives. Histamine may potentially be degraded by the use of bacterial amine oxidase or amine-negative bacteria. Only some will be cost-effective and practical for use in subsistence populations. PMID:21535566

  2. Cocaine affects foraging behaviour and biogenic amine modulated behavioural reflexes in honey bees

    Directory of Open Access Journals (Sweden)

    Eirik Søvik

    2014-11-01

    Full Text Available In humans and other mammals, drugs of abuse alter the function of biogenic amine pathways in the brain leading to the subjective experience of reward and euphoria. Biogenic amine pathways are involved in reward processing across diverse animal phyla, however whether cocaine acts on these neurochemical pathways to cause similar rewarding behavioural effects in animal phyla other than mammals is unclear. Previously, it has been shown that bees are more likely to dance (a signal of perceived reward when returning from a sucrose feeder after cocaine treatment. Here we examined more broadly whether cocaine altered reward-related behaviour, and biogenic amine modulated behavioural responses in bees. Bees developed a preference for locations at which they received cocaine, and when foraging at low quality sucrose feeders increase their foraging rate in response to cocaine treatment. Cocaine also increased reflexive proboscis extension to sucrose, and sting extension to electric shock. Both of these simple reflexes are modulated by biogenic amines. This shows that systemic cocaine treatment alters behavioural responses that are modulated by biogenic amines in insects. Since insect reward responses involve both octopamine and dopamine signalling, we conclude that cocaine treatment altered diverse reward-related aspects of behaviour in bees. We discuss the implications of these results for understanding the ecology of cocaine as a plant defence compound. Our findings further validate the honey bee as a model system for understanding the behavioural impacts of cocaine, and potentially other drugs of abuse.

  3. Cocaine affects foraging behaviour and biogenic amine modulated behavioural reflexes in honey bees.

    Science.gov (United States)

    Søvik, Eirik; Even, Naïla; Radford, Catherine W; Barron, Andrew B

    2014-01-01

    In humans and other mammals, drugs of abuse alter the function of biogenic amine pathways in the brain leading to the subjective experience of reward and euphoria. Biogenic amine pathways are involved in reward processing across diverse animal phyla, however whether cocaine acts on these neurochemical pathways to cause similar rewarding behavioural effects in animal phyla other than mammals is unclear. Previously, it has been shown that bees are more likely to dance (a signal of perceived reward) when returning from a sucrose feeder after cocaine treatment. Here we examined more broadly whether cocaine altered reward-related behaviour, and biogenic amine modulated behavioural responses in bees. Bees developed a preference for locations at which they received cocaine, and when foraging at low quality sucrose feeders increase their foraging rate in response to cocaine treatment. Cocaine also increased reflexive proboscis extension to sucrose, and sting extension to electric shock. Both of these simple reflexes are modulated by biogenic amines. This shows that systemic cocaine treatment alters behavioural responses that are modulated by biogenic amines in insects. Since insect reward responses involve both octopamine and dopamine signalling, we conclude that cocaine treatment altered diverse reward-related aspects of behaviour in bees. We discuss the implications of these results for understanding the ecology of cocaine as a plant defence compound. Our findings further validate the honey bee as a model system for understanding the behavioural impacts of cocaine, and potentially other drugs of abuse.

  4. Managing your wine fermentation to reduce the risk of biogenic amine formation

    Directory of Open Access Journals (Sweden)

    Anita Yolandi Smit

    2012-03-01

    Full Text Available Biogenic amines are nitrogenous organic compounds produced in wine from amino acid precursors mainly by microbial decarboxylation. The concentration of biogenic amines that can potentially be produced is dependent on the amount of amino acid precursors in the medium, the presence of decarboxylase positive microorganisms and conditions that enable microbial or biochemical activity such as the addition of nutrients to support the alcoholic and malolactic fermentation (MLF inoculated starter cultures. MLF can be conducted using co-inoculation or inoculated after the completion of alcoholic fermentation (AF that may also affect the level of biogenic amine in the wine. This study focussed on the impact the addition of complex commercial yeast and bacterial nutrients and the use of different MLF inoculation scenarios could have on the production of biogenic amine in the wine. Results obtained with wine showed that in this study the amine that was influenced by nutrient addition was histamine. In the synthetic winemaking using 12 different treatments no clear tendencies were observed. It was shown that in certain conditions co-inoculation could reduce the amount of biogenic amines produced.

  5. Comprehensive, structurally-informed alignment and phylogeny of vertebrate biogenic amine receptors

    Directory of Open Access Journals (Sweden)

    Stephanie J. Spielman

    2015-02-01

    Full Text Available Biogenic amine receptors play critical roles in regulating behavior and physiology in both vertebrates and invertebrates, particularly within the central nervous system. Members of the G-protein coupled receptor (GPCR family, these receptors interact with endogenous bioamine ligands such as dopamine, serotonin, and epinephrine, and are targeted by a wide array of pharmaceuticals. Despite the clear clinical and biological importance of these receptors, their evolutionary history remains poorly characterized. In particular, the relationships among biogenic amine receptors and any specific evolutionary constraints acting within distinct receptor subtypes are largely unknown. To advance and facilitate studies in this receptor family, we have constructed a comprehensive, high-quality sequence alignment of vertebrate biogenic amine receptors. In particular, we have integrated a traditional multiple sequence approach with robust structural domain predictions to ensure that alignment columns accurately capture the highly-conserved GPCR structural domains, and we demonstrate how ignoring structural information produces spurious inferences of homology. Using this alignment, we have constructed a structurally-partitioned maximum-likelihood phylogeny from which we deduce novel biogenic amine receptor relationships and uncover previously unrecognized lineage-specific receptor clades. Moreover, we find that roughly 1% of the 3039 sequences in our final alignment are either misannotated or unclassified, and we propose updated classifications for these receptors. We release our comprehensive alignment and its corresponding phylogeny as a resource for future research into the evolution and diversification of biogenic amine receptors.

  6. Characterization of biogenic secondary organic aerosols using statistical methods; Charakterisierung Biogener Sekundaerer Organischer Aerosole mit Statistischen Methoden

    Energy Technology Data Exchange (ETDEWEB)

    Spindler, Christian

    2010-07-01

    Atmospheric aerosols have important influence on the radiation balance of the Earth, on visibility and human health. Secondary organic aerosol is formed from gas-to-particle conversion of oxidized volatile organic compounds. A dominant fraction of the gases originates from plant emissions, making biogenic secondary organic aerosol (BSOA) an especially important constituent of the atmosphere. Knowing the chemical composition of BSOA particles is crucial for a thorough understanding of aerosol processes in the environment. In this work, the chemical composition of BSOA particles was measured with aerosol mass spectrometry and analyzed with statistical methods. The experimental part of the work comprises process studies of the formation and aging of biogenic aerosols in simulation chambers. Using a plant chamber, real tree emissions were used to produce particles in a way close to conditions in forest environments. In the outdoor chamber SAPHIR, OH-radicals were produced from the photooxidation of ozone under illumination with natural sunlight. Here, BSOA was produced from defined mixtures of mono- and sesquiterpenes that represent boreal forest emissions. A third kind of experiments was performed in the indoor chamber AIDA. Here, particles were produced from ozonolysis of single monoterpenes and aged by condensing OH-oxidation products. Two aerosol mass spectrometers (AMS) were used to measure the chemical composition of the particles. One of the instruments is equipped with a quadrupole mass spectrometer providing unit mass resolution. The second instrument contains a time-of-flight mass spectrometer and provides mass resolution sufficient to distinguish different fragments with the same nominal mass. Aerosol mass spectra obtained with these instruments are strongly fragmented due to electron impact ionization of the evaporated molecules. In addition, typical BSOA mass spectra are very similar to each other. In order to get a more detailed knowledge about the mass

  7. Downward particle fluxes of biogenic matter and Saharan dust across the equatorial North Atlantic

    Science.gov (United States)

    Korte, Laura F.; Brummer, Geert-Jan A.; van der Does, Michèlle; Guerreiro, Catarina V.; Hennekam, Rick; van Hateren, Johannes A.; Jong, Dirk; Munday, Chris I.; Schouten, Stefan; Stuut, Jan-Berend W.

    2017-05-01

    Massive amounts of Saharan dust are blown from the coast of northern Africa across the Atlantic Ocean towards the Americas each year. This dust has, depending on its chemistry, direct and indirect effects on global climate which include reflection and absorption of solar radiation as well as transport and deposition of nutrients and metals fertilizing both ocean and land. To determine the temporal and spatial variability of Saharan dust transport and deposition and their marine environmental effects across the equatorial North Atlantic Ocean, we have set up a monitoring experiment using deep-ocean sediment traps as well as land-based dust collectors. The sediment traps were deployed at five ocean sites along a transatlantic transect between north-west Africa and the Caribbean along 12° N, in a downwind extension of the land-based dust collectors placed at 19° N on the Mauritanian coast in Iouîk. In this paper, we lay out the setup of the monitoring experiment and present the particle fluxes from sediment trap sampling over 24 continuous and synchronized intervals from October 2012 through to November 2013. We establish the temporal distribution of the particle fluxes deposited in the Atlantic and compare chemical compositions with the land-based dust collectors propagating to the downwind sediment trap sites, and with satellite observations of Saharan dust outbreaks. First-year results show that the total mass fluxes in the ocean are highest at the sampling sites in the east and west, closest to the African continent and the Caribbean, respectively. Element ratios reveal that the lithogenic particles deposited nearest to Africa are most similar in composition to the Saharan dust collected in Iouîk. Downwind increasing Al, Fe and K contents suggest a downwind change in the mineralogical composition of Saharan dust and indicate an increasing contribution of clay minerals towards the west. In the westernmost Atlantic Ocean, admixture of re-suspended clay

  8. Mineral facilities of Europe

    Science.gov (United States)

    Almanzar, Francisco; Baker, Michael S.; Elias, Nurudeen; Guzman, Eric

    2010-01-01

    This map displays over 1,700 records of mineral facilities within the countries of Europe and western Eurasia. Each record represents one commodity and one facility type at a single geographic location. Facility types include mines, oil and gas fields, and plants, such as refineries, smelters, and mills. Common commodities of interest include aluminum, cement, coal, copper, gold, iron and steel, lead, nickel, petroleum, salt, silver, and zinc. Records include attributes, such as commodity, country, location, company name, facility type and capacity (if applicable), and latitude and longitude geographical coordinates (in both degrees-minutes-seconds and decimal degrees). The data shown on this map and in table 1 were compiled from multiple sources, including (1) the most recently available data from the U.S. Geological Survey (USGS) Minerals Yearbook (Europe and Central Eurasia volume), (2) mineral statistics and information from the USGS Minerals Information Web site (http://minerals.usgs.gov/minerals/pubs/country/europe.html), and (3) data collected by the USGS minerals information country specialists from sources, such as statistical publications of individual countries, annual reports and press releases of operating companies, and trade journals. Data reflect the most recently published table of industry structure for each country at the time of this publication. Additional information is available from the country specialists listed in table 2.

  9. Trace Elements in Manganese Minerals as Potential Biosignatures on Mars

    Science.gov (United States)

    Lanza, N.; Clegg, S. M.; Cousin, A.; Forni, O.; Kirk, M. F.; Lamm, S. N.; Ollila, A.; Wiens, R. C.

    2017-12-01

    Observations from the Curiosity rover in Gale crater, Mars have shown the presence of high abundances of manganese (>3 wt% MnO) within sedimentary rocks throughout the traverse. Such high Mn abundances point to the past presence of abundant liquid water and strongly oxidizing conditions. On Earth, these types of environments are almost always habitable and are frequently inhabited by microbes. Given its close association with life and habitable environments on Earth, manganese has long been considered a potential biosignature for Mars. However, high concentrations of martian Mn have only recently been observed. In addition to the observations in Gale crater, high abundances of Mn have also been observed in Endeavor crater by the Opportunity rover and in the paired martian meteorites NWA 7034 and 7533 (`Black Beauty'), suggesting that Mn deposits may be more widespread on Mars than previously thought. The goal of this work is to determine whether there are unique signatures from rover payload instruments that can distinguish Mn-rich deposits as biogenic in origin (i.e., produced by life) from abiogenic Mn deposits. Importantly, Mn-oxides are known to scavenge trace metals from water because of their surface charge properties. We hypothesize that the presence and abundance of specific trace elements are the critical, distinguishing evidence for identifying the biogenic origin of Mn-bearing materials. A suite of natural rocks containing Mn-rich minerals with a range of Mn redox states was selected for analysis with laser-induced breakdown spectroscopy (LIBS). Samples with a biogenic origin had mixed valence redox states between Mn3+ and Mn4+ as inferred by mineralogy. Trace elements Ba, Li, Sr, and Rb were quantified and the presence or absence of Zn and Cu was ascertained by examining key LIBS peaks. Results show that samples with a known microbial origin had moderate Mn abundances >30 wt% MnO and higher Li and Ba. These results suggest that high Mn abundance alone

  10. Oceans: Geochemistry and mineral resources

    Digital Repository Service at National Institute of Oceanography (India)

    Joao, H.M.; Paropkari, A.L.

    With increased exploitation of the onshore mineral resources, oceans that cover almost 71% of earth's surface and known as storehouse of minerals, provide a suitable alternative. Amongst the various underwater mineral resources, placer deposits...

  11. Characterization of clay minerals

    International Nuclear Information System (INIS)

    Diaz N, C.; Olguin, M.T.; Solache R, M.; Alarcon H, T.; Aguilar E, A.

    2002-01-01

    The natural clays are the more abundant minerals on the crust. They are used for making diverse industrial products. Due to the adsorption and ion exchange properties of these, a great interest for developing research directed toward the use of natural clays for the waste water treatment has been aroused. As part of such researches it is very important to carry out previously the characterization of the interest materials. In this work the results of the mineral and elemental chemical composition are presented as well as the morphological characteristics of clay minerals from different regions of the Mexican Republic. (Author)

  12. (40)K in the Black Sea: a proxy to estimate biogenic sedimentation.

    Science.gov (United States)

    Gulin, S B; Gulina, L V; Sidorov, I G; Proskurnin, V Yu; Duka, M S; Moseichenko, I N; Rodina, E A

    2014-08-01

    An approach to estimate the rate of biogenic sedimentation in the Black Sea using the naturally occurring radionuclide (40)K has been considered. It allows assessment of the contribution of suspended matter of biological origin to the overall sediment accumulation in the Black Sea coastal, shelf and deep-water areas. Based upon this method, a relationship between the biogenic fraction of the seabed sediments and the water depth has been established with a view to differentiating the contributions of allochthonous and autochthonous suspended matter to the sedimentation rate. Overall, (40)K can be considered as an easily applicable proxy to assess sedimentation rate of biogenic fraction of particulate matter in marine environments. Copyright © 2014 Elsevier Ltd. All rights reserved.

  13. Measurements of atmospheric hydrocarbons and biogenic emission fluxes in the Amazon boundary layer

    Science.gov (United States)

    Zimmerman, P. R.; Greenberg, J. P.; Westberg, C. E.

    1988-01-01

    Tropospheric mixing ratios of methane, C2-C10 hydrocarbons, and carbon monoxide were measured over the Amazon tropical forest near Manaus, Amazonas, Brazil, in July and August 1985. The measurements, consisting mostly of altitude profiles of these gases, were all made within the atmospheric boundary layer up to an altitude of 1000 m above ground level. Data characterize the diurnal hydrocarbon composition of the boundary layer. Biogenic emissions of isoprene control hydroxyl radical concentrations over the forest. Biogenic emission fluxes of isoprene and terpenes are estimated to be 25,000 micrograms/sq m per day and 5600 micrograms/sq m per day, respectively. This isoprene emission is equivalent to 2 percent of the net primary productivity of the tropical forest. Atmospheric oxidation of biogenic isoprene and terpenes emissions from the Amazon forest may account for daily increases of 8-13 ppb for carbon monoxide in the planetary boundary layer.

  14. Carbon-14 based determination of the biogenic fraction of industrial CO(2) emissions - application and validation.

    Science.gov (United States)

    Palstra, S W L; Meijer, H A J

    2010-05-01

    The (14)C method is a very reliable and sensitive method for industrial plants, emission authorities and emission inventories to verify data estimations of biogenic fractions of CO(2) emissions. The applicability of the method is shown for flue gas CO(2) samples that have been sampled in 1-h intervals at a coal- and wood-fired power plant and a waste incineration plant. Biogenic flue gas CO(2) fractions of 5-10% and 48-50% have been measured at the power plant and the waste incineration plant, respectively. The reliability of the method has been proven by comparison of the power plant results with those based on carbon mass input and output data of the power plant. At industrial plants with relatively low biogenic CO(2) fraction (<10%) the results need to be corrected for sampled (14)CO(2) from atmospheric air. Copyright 2009 Elsevier Ltd. All rights reserved.

  15. Biogenic carbon in combustible waste: Waste composition, variability and measurement uncertainty

    DEFF Research Database (Denmark)

    Larsen, Anna Warberg; Fuglsang, Karsten; Pedersen, Niels H.

    2013-01-01

    Obtaining accurate data for the contents of biogenic and fossil carbon in thermally-treated waste is essential for determination of the environmental profile of waste technologies. Relations between the variability of waste chemistry and the biogenic and fossil carbon emissions are not well...... described in the literature. This study addressed the variability of biogenic and fossil carbon in combustible waste received at a municipal solid waste incinerator. Two approaches were compared: (1) radiocarbon dating (14C analysis) of carbon dioxide sampled from the flue gas, and (2) mass and energy...... balance calculations using the balance method. The ability of the two approaches to accurately describe short-term day-to-day variations in carbon emissions, and to which extent these short-term variations could be explained by controlled changes in waste input composition, was evaluated. Finally...

  16. BOREAS TGB-5 Biogenic Soil Emissions of NO and N2O

    Science.gov (United States)

    Levine, J. S.; Winstead, E. L.; Parsons, D. A. B.; Scholes, M. C.; Cofer, W. R.; Cahoon, D. R.; Sebacher, D. I.; Scholes, R. J.; Hall, Forrest G. (Editor); Conrad, Sara K. (Editor)

    2000-01-01

    The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB)-5 team made several measurements of trace gas concentrations and fluxes at various NSA sites. This data set contains biogenic soil emissions of nitric oxide and nitrous oxide that were measured over a wide range of spatial and temporal site parameters. Since very little is known about biogenic soil emissions of nitric oxide and nitrous oxide from the boreal forest, the goal of the measurements was to characterize the biogenic soil fluxes of nitric oxide and nitrous oxide from black spruce and jack pine areas in the boreal forest. The diurnal variation and monthly variation of the emissions was examined as well as the impact of wetting through natural or artificial means. Temporally, the data cover mid-August 1993, June to August 1994, and mid-July 1995. The data are provided in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884).

  17. Effects of Spartina alterniflora invasion on biogenic elements in a subtropical coastal mangrove wetland.

    Science.gov (United States)

    Yu, Xiaoqing; Yang, Jun; Liu, Lemian; Tian, Yuan; Yu, Zheng

    2015-02-01

    The invasion by exotic cordgrass (Spartina alterniflora) has become one of the most serious and challenging environmental and ecological problems in coastal China because it can have adverse effects on local native species, thereby changing ecosystem processes, functions, and services. In this study, 300 surface sediments were collected from 15 stations in the Jiulong River Estuary, southeast China, across four different seasons, in order to reveal the spatiotemporal variability of biogenic elements and their influencing factors in the subtropical coastal mangrove wetland. The biogenic elements including carbon, nitrogen, and sulfur (C, N, and S) were determined by an element analyzer, while the phosphorus (P) was determined by a flow injection analyzer. The concentrations of biogenic elements showed no significant differences among four seasons except total phosphorus (TP); however, our ANOVA analyses revealed a distinct spatial pattern which was closely related with the vegetation type and tidal level. Values of total carbon (TC) and total nitrogen (TN) in the surface sediment of mangrove vegetation zones were higher than those in the cordgrass and mudflat zones. The concentrations of TC, TN, TP, and total sulfur (TS) in the high tidal zones were higher than those in the middle and low tidal zones. Redundancy analysis (RDA) revealed that tidal level, vegetation type, and season had some significant influence on the distribution of biogenic elements in the Jiulong River Estuary, by explaining 18.2, 7.7, and 4.9 % of total variation in the four biogenic elements, respectively. In conclusion, S. alterniflora invasion had substantial effects on the distributions of biogenic elements in the subtropical coastal wetland. If regional changes in the Jiulong River Estuary are to persist and much of the mangrove vegetation was to be replaced by cordgrass, there would be significant decreases on the overall storage of C and N in this coastal zone. Therefore, the native

  18. Antimicrobial activity of biogenic silver nanoparticles, and silver chloride nanoparticles: an overview and comments.

    Science.gov (United States)

    Durán, Nelson; Nakazato, Gerson; Seabra, Amedea B

    2016-08-01

    The antimicrobial impact of biogenic-synthesized silver-based nanoparticles has been the focus of increasing interest. As the antimicrobial activity of nanoparticles is highly dependent on their size and surface, the complete and adequate characterization of the nanoparticle is important. This review discusses the characterization and antimicrobial activity of biogenic synthesized silver nanoparticles and silver chloride nanoparticles. By revising the literature, there is confusion in the characterization of these two silver-based nanoparticles, which consequently affects the conclusion regarding to their antimicrobial activities. This review critically analyzes recent publications on the synthesis of biogenic silver nanoparticles and silver chloride nanoparticles by attempting to correlate the characterization of the nanoparticles with their antimicrobial activity. It was difficult to correlate the size of biogenic nanoparticles with their antimicrobial activity, since different techniques are employed for the characterization. Biogenic synthesized silver-based nanoparticles are not completely characterized, particularly the nature of capped proteins covering the nanomaterials. Moreover, the antimicrobial activity of theses nanoparticles is assayed by using different protocols and strains, which difficult the comparison among the published papers. It is important to select some bacteria as standards, by following international foundations (Pharmaceutical Microbiology Manual) and use the minimal inhibitory concentration by broth microdilution assays from Clinical and Laboratory Standards Institute, which is the most common assay used in antibiotic ones. Therefore, we conclude that to have relevant results on antimicrobial effects of biogenic silver-based nanoparticles, it is necessary to have a complete and adequate characterization of these nanostructures, followed by standard methodology in microbiology protocols.

  19. Effects of storage temperature on biogenic amine concentrations in meat of uneviscerated pheasants (Phasianus colchicus

    Directory of Open Access Journals (Sweden)

    Zdeňka Hutařová

    2013-01-01

    Full Text Available The aim of this study was to determine the hygienic quality of the pheasants reared for high-quality meat production by the biogenic amine concentrations in their meat. The content of biogenic amines was measured in the meat of sixty male pheasants killed by pithing and stored uneviscerated for 21 days under different storage temperatures (0 °C, 7 °C and 15 °C. The samples of breast and thigh muscles of pheasant were tested at weekly intervals. Biogenic amines were analysed by reverse phase liquid chromatography and detected by tandem mass spectrometry. Concentrations of biogenic amines (except spermin and spermidin in thigh muscle were higher than in breast muscle. Highly significant difference (P < 0.01 was found in tyramine (5.80 mg/kg and 1.38 mg/kg for thigh and breast muscle, respectively, cadaverine (40.80 mg/kg and 14.43 mg/kg for thigh and breast muscle, respectively, putrescine (13.42 mg/kg and 3.16 mg/kg for thigh and breast muscle, respectively and histamine (5.51 mg/kg and 1.70 mg/kg for thigh and breast muscle, respectively concentrations after 21 days of storage at 15 °C. This study provides information on the dynamics of biogenic amine formation in pheasant meat during 21 days of storage at different temperatures. Based on our results, we can recommend storing pithed uneviscerated pheasants at 0–7°C for up to 21 days, or at 15 °C for up to 7 days. Concentrations of biogenic amines gained in our study can be helpful in evaluating freshness and hygienic quality of the pheasant game meat.

  20. Biogenic contribution to PM-2.5 ambient aerosol from radiocarbon measurements

    Science.gov (United States)

    Lewis, C.; Klouda, G.; Ellenson, W.

    2003-04-01

    Knowledge of the relative contributions of biogenic versus anthropogenic sources to ambient aerosol is of great interest in the formulation of strategies to achieve nationally mandated air quality standards. Radiocarbon (14C) measurements provide a means to quantify the biogenic fraction of any carbon-containing sample of ambient aerosol. In the absence of an impact from biomass burning (e.g., during summertime) such measurements can provide an estimate of the contribution of biogenic secondary organic aerosol, from biogenic volatile organic compound precursors. Radiocarbon results for 11.5-h PM-2.5 samples collected near Nashville, Tennessee, USA, during summer 1999 will be presented. On average the measured biogenic fraction was surprisingly large (more than half), with the average biogenic fraction for night samples being only slightly smaller than for day samples. Discussion will include (a) description of the radiocarbon methodology, (b) use of radiocarbon measurements on local vegetation and fuel samples as calibration data, (c) concurrent measurements of organic carbon and elemental carbon ambient concentrations, (d) assessment of organic aerosol sampling artifact through use of organic vapor denuders, variable face velocities, and filter extraction, and (e) comparison with published radiocarbon results obtained in Houston, Texas in a similar study. Disclaimer: This work has been funded wholly or in part by the United States Environmental Protection Agency under Interagency Agreement No. 13937923 to the National Institute of Standards and Technology, and Contract No. 68-D5-0049 to ManTech Environmental Tecnology, Inc. It has been subjected to Agency review and approved for publication.

  1. Uncertainty in biogenic isoprene emissions and its impacts on tropospheric chemistry in East Asia.

    Science.gov (United States)

    Han, K M; Park, R S; Kim, H K; Woo, J H; Kim, J; Song, C H

    2013-10-01

    In this study, the accuracy of biogenic isoprene emission fluxes over East Asia during two summer months (July and August) was examined by comparing two tropospheric HCHO columns (ΩHCHO) obtained from the SCIAMACHY sensor and the Community Multi-scale Air Quality (CMAQ v4.7.1) model simulations, using three available biogenic isoprene emission inventories over East Asia: i) GEIA, ii) MEGAN and iii) MOHYCAN. From this comparative analysis, the tropospheric HCHO columns from the CMAQ model simulations, using the MEGAN and MOHYCAN emission inventories (Ω(CMAQ, MEGAN) and Ω(CMAQ, MOHYCAN)), were found to agree well with the tropospheric HCHO columns from the SCIAMACHY observations (Ω(SCIA)). Secondly, the propagation of such uncertainties in the biogenic isoprene emission fluxes to the levels of atmospheric oxidants (e.g., OH and HO2) and other atmospheric gaseous/particulate species over East Asia during the two summer months was also investigated. As the biogenic isoprene emission fluxes decreased from the GEIA to the MEGAN emission inventories, the levels of OH radicals increased by factors of 1.39 and 1.75 over Central East China (CEC) and South China, respectively. Such increases in the OH radical mixing ratios subsequently influence the partitioning of HO(y) species. For example, the HO2/OH ratios from the CMAQ model simulations with GEIA isoprene emissions were 2.7 times larger than those from the CMAQ model simulations based on MEGAN isoprene emissions. The large HO2/OH ratios from the CMAQ model simulations with the GEIA biogenic emission were possibly due to the overestimation of GEIA biogenic isoprene emissions over East Asia. It was also shown that such large changes in HO(x) radicals created large differences on other tropospheric compounds (e.g., NO(y) chemistry) over East Asia during the summer months. Copyright © 2013 The Authors. Published by Elsevier B.V. All rights reserved.

  2. Condensed-phase biogenic-anthropogenic interactions with implications for cold cloud formation.

    Science.gov (United States)

    Charnawskas, Joseph C; Alpert, Peter A; Lambe, Andrew T; Berkemeier, Thomas; O'Brien, Rachel E; Massoli, Paola; Onasch, Timothy B; Shiraiwa, Manabu; Moffet, Ryan C; Gilles, Mary K; Davidovits, Paul; Worsnop, Douglas R; Knopf, Daniel A

    2017-08-24

    Anthropogenic and biogenic gas emissions contribute to the formation of secondary organic aerosol (SOA). When present, soot particles from fossil fuel combustion can acquire a coating of SOA. We investigate SOA-soot biogenic-anthropogenic interactions and their impact on ice nucleation in relation to the particles' organic phase state. SOA particles were generated from the OH oxidation of naphthalene, α-pinene, longifolene, or isoprene, with or without the presence of sulfate or soot particles. Corresponding particle glass transition (T g ) and full deliquescence relative humidity (FDRH) were estimated using a numerical diffusion model. Longifolene SOA particles are solid-like and all biogenic SOA sulfate mixtures exhibit a core-shell configuration (i.e. a sulfate-rich core coated with SOA). Biogenic SOA with or without sulfate formed ice at conditions expected for homogeneous ice nucleation, in agreement with respective T g and FDRH. α-pinene SOA coated soot particles nucleated ice above the homogeneous freezing temperature with soot acting as ice nuclei (IN). At lower temperatures the α-pinene SOA coating can be semisolid, inducing ice nucleation. Naphthalene SOA coated soot particles acted as ice nuclei above and below the homogeneous freezing limit, which can be explained by the presence of a highly viscous SOA phase. Our results suggest that biogenic SOA does not play a significant role in mixed-phase cloud formation and the presence of sulfate renders this even less likely. However, anthropogenic SOA may have an enhancing effect on cloud glaciation under mixed-phase and cirrus cloud conditions compared to biogenic SOA that dominate during pre-industrial times or in pristine areas.

  3. The impact of anthropogenic and biogenic emissions on surface ozone concentrations in Istanbul.

    Science.gov (United States)

    Im, Ulas; Poupkou, Anastasia; Incecik, Selahattin; Markakis, Konstantinos; Kindap, Tayfun; Unal, Alper; Melas, Dimitros; Yenigun, Orhan; Topcu, Sema; Odman, M Talat; Tayanc, Mete; Guler, Meltem

    2011-03-01

    Surface ozone concentrations at Istanbul during a summer episode in June 2008 were simulated using a high resolution and urban scale modeling system coupling MM5 and CMAQ models with a recently developed anthropogenic emission inventory for the region. Two sets of base runs were performed in order to investigate for the first time the impact of biogenic emissions on ozone concentrations in the Greater Istanbul Area (GIA). The first simulation was performed using only the anthropogenic emissions whereas the second simulation was performed using both anthropogenic and biogenic emissions. Biogenic NMVOC emissions were comparable with anthropogenic NMVOC emissions in terms of magnitude. The inclusion of biogenic emissions significantly improved the performance of the model, particularly in reproducing the low night time values as well as the temporal variation of ozone concentrations. Terpene emissions contributed significantly to the destruction of the ozone during nighttime. Biogenic NMVOCs emissions enhanced ozone concentrations in the downwind regions of GIA up to 25ppb. The VOC/NO(x) ratio almost doubled due to the addition of biogenic NMVOCs. Anthropogenic NO(x) and NMVOCs were perturbed by ±30% in another set of simulations to quantify the sensitivity of ozone concentrations to the precursor emissions in the region. The sensitivity runs, as along with the model-calculated ozone-to-reactive nitrogen ratios, pointed NO(x)-sensitive chemistry, particularly in the downwind areas. On the other hand, urban parts of the city responded more to changes in NO(x) due to very high anthropogenic emissions. Copyright © 2010 Elsevier B.V. All rights reserved.

  4. Experimental assessment of the liquefaction resistance of calcareous biogenous sands

    Directory of Open Access Journals (Sweden)

    Sandoval Eimar

    2012-10-01

    Full Text Available

    ABSTRACT

    Liquefaction is a phenomenon in which soils, typically sands, suddenly loose a substantial amount of their shear strength and stiffness, this often triggered by large-magnitude earthquakes. Most liquefaction research has focused on silicate-based sands and not on other sand types, such as calcareous biogenous sands Calcareous sands are usually composed of skeletal or non-skeletal remains of marine organisms, with unique characteristics in terms of their mineralogy surface roughness, particle shape, crushability, and intraparticle porosity. The unique characteristics of calcareous sands suggest that their geotechnical engineering behaviour can be substantially different compared to that of terrigenous sands, including their behaviour under seismic loading, which have not been very well studied

    This paper presents the results of an experimental programme aimed at studying the cyclic liquefaction resistance of uncemented calcareous biogenous sands retrieved from south-western Puerto Rico Evaluation of liquefaction potential involved a comprehensive set of isotropically consolidated undrained cyclic triaxial tests on reconstituted samples of this calcareous sand. The programme also included tests on Ottawa terrigenous silica sand samples prepared and tested in similar conditions for comparison purposes.

    In general, the experimental results showed that Cabo Rojo calcareous sands had higher liquefaction resistance compared to Ottawa silica sands tested under similar conditions. Important differences between calcareous and silica sands regarding pore pressure generation characteristics and axial strain accumulation were also observed


  5. Mineral composition of deposits

    International Nuclear Information System (INIS)

    Khasanov, A.Kh.

    1988-01-01

    Studying of mineral and chemical composition of ores have immediate practical sense. It is a basic at solving problems of origin of deposit, choosing of most profitable method of their exploitation and problems of complex ores using

  6. Law of radioactive minerals

    International Nuclear Information System (INIS)

    1980-01-01

    Legal device done in order to standardize and promote the exploration and explotation of radioactive minerals by peruvian and foreign investors. This device include the whole process, since the prospection until the development, after previous auction given by IPEN

  7. sequenceMiner algorithm

    Data.gov (United States)

    National Aeronautics and Space Administration — Detecting and describing anomalies in large repositories of discrete symbol sequences. sequenceMiner has been open-sourced! Download the file below to try it out....

  8. Comparison of U and Np uptake on biogenic and abiotic ferrihydrite by XAFS

    Energy Technology Data Exchange (ETDEWEB)

    Krawczyk-Baersch, Evelyn [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Biogeochemistry; Schmeide, Katja [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Surface Processes; Kvashnina, Kristina O.; Rossberg, Andre; Scheinost, Andreas C. [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Molecular Structures

    2017-06-01

    XAS spectra of U and Np sorption biogenic ferrihydrite samples were compared to abiotic samples. The k{sup 3}-weighted χ-spectrum and its Fourier-transform of the studied biogenic ferrihydrite sample bears close resemblance to the bidentate edge-sharing innersphere sorption {sup 1}E complex, which is the main sorption species on abiotic ferrihydrite. Based on the shell fit analysis, the distances of the coordination shells U-O{sub eq}, U-O{sub ax}, and U-Fe are similar to those determined for abiotic ferrihydrite samples.

  9. Enhanced biogenic emissions of nitric oxide and nitrous oxide following surface biomass burning

    Science.gov (United States)

    Anderson, Iris C.; Levine, Joel S.; Poth, Mark A.; Riggan, Philip J.

    1988-01-01

    Recent measurements indicate significantly enhanced biogenic soil emissions of both nitric oxide (NO) and nitrous oxide (N2O) following surface burning. These enhanced fluxes persisted for at least six months following the burn. Simultaneous measurements indicate enhanced levels of exchangeable ammonium in the soil following the burn. Biomass burning is known to be an instantaneous source of NO and N2O resulting from high-temperature combustion. Now it is found that biomass burning also results in significantly enhanced biogenic emissions of these gases, which persist for months following the burn.

  10. Proportion of biogenic carbon in flue gas by carbon 4 measurement

    International Nuclear Information System (INIS)

    Lehtomaeki, J.; Antson, O.; Jungner, H.

    2006-01-01

    The rules of EU's emissions trading system promote the decrease of fossile emissions. The usefulness of using waste fuels in emissions trading depends on the proportion of biogenic component. Companies need to verify the amount of renewable energy from produced energy or emissions. It can be estimated that the demand on emission measurement devices and services is large and increasing in EU and later also in the whole world. This project aims to clarify the possibilities and restrictions of C-14 isotope method in determining biogenic and fossile part of recycled fuel. (orig.)

  11. PC-BEIS: a personal computer version of the biogenic emissions inventory system

    International Nuclear Information System (INIS)

    Pierce, T.E.; Waldruff, P.S.

    1991-01-01

    The US Environmental Protection Agency's Biogenic Emissions Inventory System (BEIS) has been adapted for use on IBM-compatible personal computers (PCs). PC-BEIS estimates hourly emissions of isoprene, α-pinene, other monoterpenes, and unidentified hydrocarbons for any county in the contiguous United States. To run the program, users must provide hourly data on ambient temperature, relative humidity, wind speed, cloud cover, and a code that identifies the particular county. This paper provides an overview of the method used to calculate biogenic emissions, shows an example application, and gives information on how to obtain a copy of the program

  12. Radiocarbon-based determination of biogenic and fossil carbon partitioning in the production of synthetic natural gas

    NARCIS (Netherlands)

    Palstra, Sanne W. L.; Rabou, Luc P. L. M.; Meijer, Harro A. J.

    2015-01-01

    The applicability of the radiocarbon (C-14) method for the quantification of the biogenic carbon fractions at different stages of the Synthetic Natural Gas (SNG) production process is demonstrated in this study. The C-14-based biogenic carbon fractions were determined in process flue gas and raw SNG

  13. USER'S GUIDE TO THE PERSONAL COMPUTER VERSION OF THE BIOGENIC EMISSIONS INVENTORY SYSTEM (PC-BEIS2)

    Science.gov (United States)

    The document is a user's guide for an updated Personal Computer version of the Biogenic Emissions Inventory System (PC-BEIS2), allowing users to estimate hourly emissions of biogenic volatile organic compounds (BVOCs) and soil nitrogen oxide emissions for any county in the contig...

  14. Effect of biogenic carbon inventory on the life cycle assessment of bioenergy: challenges to the neutrality assumption

    NARCIS (Netherlands)

    Wiloso, E.I.; Heijungs, R.; Huppes, G.; Fang, K.

    2016-01-01

    Biogenic carbon is defined as carbon contained in biomass that is accumulated during plant growth. In spite of the considerable progress towards the inventory of biogenic carbon in the life cycle assessment (LCA) of bioenergy in policy guidelines, many scientific articles tend to give no

  15. [Pneumoconiosis in bauxite miners].

    Science.gov (United States)

    Molinini, R; Pesola, M; Digennaro, M A; Carino, M; Nuzzaco, A; Coviello, F

    1985-01-01

    The authors examined a group of 40 miners who were being working at an Apulian bauxite mine, presently inactive. Radiographic findings of pulmonary micronodulation without significant reduction of lung functions were showed in 15 miners. Mineralogical analysis of mine dust samples excluded any presence of more than 1% free silica. As a result of this study hypotheses have been formulated about pathogenesis of this moderated and non-invasive pneumoconiosis, showed in long exposed subjects to low silica content dusts.

  16. Fluorescent minerals, a review

    Science.gov (United States)

    Modreski, P.J.; Aumente-Modreski, R.

    1996-01-01

    Fluorescent minerals are more than just an attractive novelty, and collecting them is a speciality for thousands of individuals who appreciate their beauty, rarity, and scientific value. Fluorescent properties can be used as an aid to mineral identification, locality determination, and distinction between natural and synthetic gemstones. This article gives an overview of those aspects of fluorescence that are of most interest to collectors, hobbyists, and mineralogists. -from Authors

  17. Soil phosphorus redistribution among iron-bearing minerals under redox fluctuation

    Science.gov (United States)

    Lin, Y.; Bhattacharyya, A.; Campbell, A.; Nico, P. S.; Pett-Ridge, J.; Silver, W. L.

    2016-12-01

    Phosphorus (P) is a key limiting nutrient in tropical forests that governs primary production, litter decomposition, and soil respiration. A large proportion of P in these highly weathered soils is bound to short-range ordered or poorly crystalline iron (Fe) minerals. It is well-documented that these Fe minerals are redox-sensitive; however, little is known about how Fe-redox interactions affect soil P turnover. We evaluated the impacts of oxic/anoxic fluctuation on soil P fractions and reactive Fe species in a laboratory incubation experiment. Soils from a humid tropical forest were amended with plant biomass and incubated for up to 44 days under four redox regimes: static oxic, static anoxic, high frequency fluctuating (4-day oxic/4-day anoxic), and low frequency fluctuating (8-day oxic/4-day anoxic). We found that the static anoxic treatment induced a 10-fold increase in Fe(II) (extracted by hydrochloric acid) and a 1.5-fold increase in poorly crystalline Fe (extracted by ammonium oxalate), suggesting that anoxic conditions drastically increased Fe(III) reduction and the formation of amorphous Fe minerals. Static anoxic conditions also increased Fe-bound P (extracted by sodium hydroxide) and increased the oxalate-extractable P by up to 110% relative to static oxic conditions. In two fluctuating treatments, Fe(II) and oxalate-extractable Fe and P were all increased by short-term reduction events after 30 minutes, but fell back to their initial levels after 3 hours. These results suggest that reductive dissolution of Fe(III) minerals mobilized a significant amount of P; however, this P could be rapidly re-adsorbed. Furthermore, bioavailable P extracted by sodium bicarbonate solution was largely unaffected by redox regimes and was only increased by static anoxic conditions after 20 days. Overall, our data demonstrate that a significant amount of soil P may be liberated and re-adsorbed by Fe minerals during redox fluctuation. Even though bioavailable P appears to be

  18. Mineral commodity summaries 2014

    Science.gov (United States)

    ,

    2014-01-01

    Each chapter of the 2014 edition of the U.S. Geological Survey (USGS) Mineral Commodity Summaries (MCS) includes information on events, trends, and issues for each mineral commodity as well as discussions and tabular presentations on domestic industry structure, Government programs, tariffs, 5-year salient statistics, and world production and resources. The MCS is the earliest comprehensive source of 2013 mineral production data for the world. More than 90 individual minerals and materials are covered by two-page synopses. For mineral commodities for which there is a Government stockpile, detailed information concerning the stockpile status is included in the two-page synopsis. Abbreviations and units of measure, and definitions of selected terms used in the report, are in Appendix A and Appendix B, respectively. “Appendix C—Reserves and Resources” includes “Part A—Resource/Reserve Classification for Minerals” and “Part B—Sources of Reserves Data.” A directory of USGS minerals information country specialists and their responsibilities is Appendix D. The USGS continually strives to improve the value of its publications to users. Constructive comments and suggestions by readers of the MCS 2014 are welcomed.

  19. Mineral commodity summaries 2013

    Science.gov (United States)

    ,

    2013-01-01

    Each chapter of the 2013 edition of the U.S. Geological Survey (USGS) Mineral Commodity Summaries (MCS) includes information on events, trends, and issues for each mineral commodity as well as discussions and tabular presentations on domestic industry structure, Government programs, tariffs, 5-year salient statistics, and world production and resources. The MCS is the earliest comprehensive source of 2012 mineral production data for the world. More than 90 individual minerals and materials are covered by two-page synopses. For mineral commodities for which there is a Government stockpile, detailed information concerning the stockpile status is included in the two-page synopsis. Abbreviations and units of measure, and definitions of selected terms used in the report, are in Appendix A and Appendix B, respectively. “Appendix C—Reserves and Resources” includes “Part A—Resource/Reserve Classification for Minerals” and “Part B—Sources of Reserves Data.” A directory of USGS minerals information country specialists and their responsibilities is Appendix D. The USGS continually strives to improve the value of its publications to users. Constructive comments and suggestions by readers of the MCS 2013 are welcomed.

  20. Clay Minerals: Adsorbophysical Properties

    International Nuclear Information System (INIS)

    Kotova, O

    2013-01-01

    The structure and features of surfaces of clay minerals (kaolin, montmorillonite, etc) have an important scientific and practical value. On the surface the interrelation of processes at electronic, atomic and molecular levels is realized. Availability of mineral surface to external influences opens wide scientific and technical opportunities of use of the surface phenomena, so the research of crystal-chemical and crystal-physical processes in near-surface area of clay minerals is important. After long term researches of gas-clay mineral system in physical fields the author has obtained experimental and theoretical material contributing to the creation of the surface theory of clays. A part of the researches is dedicated to studying the mechanism of crystal-chemical and crystal-physical processes in near surface area of clay mineral systems, selectivity of the surface centers to interact with gas phase molecules and adsorbophysical properties. The study of physical and chemical properties of fine clay minerals and their modification has a decisive importance for development of theory and practice of nanotechnologies: they are sorbents, membranes, ceramics and other materials with required electronic features

  1. Natural biogenic solid fuels - environmentally relevant characteristics and possible influences. Final report; Naturbelassene biogene Festbrennstoffe - umweltrelevante Eigenschaften und Einflussmoeglichkeiten. Abschlussbericht

    Energy Technology Data Exchange (ETDEWEB)

    Hartmann, H.; Boehm, T.; Maier, L. [Bayerische Landesanstalt fuer Landtechnik, Friesing-Weihenstephan (Germany). Arbeitsgruppe Festbrennstoffe

    2000-09-01

    , Weizenstroh und Weizenganzpflanzen. Eine Datenbank fuer naturbelassene biogene Festbrennstoffe wurde errichtet. Hierfuer wurde ein relationales Datenbankmodell gewaehlt. Dessen Struktur wurde so angelegt, dass neben den eigentlichen Messgroessen auch eine Vielzahl weiterer Eigenschaften und Informationen zum Brennstoff sowie seine Herkunftsmerkmale und die verwendeten Analyseverfahren festgehalten werden konnten. Die in den eigenen Versuchsserien zustande gekommenen Analyseergebnisse wurden durch weitere Daten aus einer umfangreichen Recherche (Befragung) sowie aus Literaturangaben ergaenzt, so dass insgesamt ca. 1.238 Datensaetze (Stand April 1999) zusammengetragen werden konnten. (orig.)

  2. Magnetic comparison of abiogenic and biogenic alteration products of lepidocrocite

    Science.gov (United States)

    Till, J. L.; Guyodo, Y.; Lagroix, F.; Ona-Nguema, G.; Brest, J.

    2014-06-01

    Lepidocrocite is a potentially important Fe-bearing precursor phase for the production of nanoscale Fe-oxide particles in the environment. We present a detailed magnetic characterization of various alteration products of lepidocrocite resulting from thermal dehydroxylation reactions and bacterially induced bioreduction and remineralization, accompanied by characterization with x-ray diffraction (XRD) and transmission electron microscopy. Dehydroxylation during annealing at moderate temperatures produces a topotactic transformation from lepidocrocite to maghemite when heated in an oxidizing atmosphere, or to magnetite when heated in a reducing atmosphere. The abiotic Fe-oxide products form an oriented framework of strongly interacting superparamagnetic crystallites and are characterized by a distinctive porous nanostructure observed by electron microscopy. Lepidocrocite bioreduction by the iron-reducing bacterium Shewanella putrefaciens ATCC 8071 produces nanoscale particles of a strongly magnetic phase. This Fe(II)-bearing mineral produced by bioreduction is highly crystalline and euhedral in shape, with a broad grain size distribution and is indicated by magnetic and XRD measurements to be a cation-excess magnetite. We highlight the distinguishing microscopic characteristics of magnetite from both abiotic and bacterially induced mineralization that should allow them to be identified in natural settings. Moreover, both mechanisms of alteration represent potential pathways for the direct formation of strongly magnetic fine-grained Fe-oxide particles in sedimentary environments.

  3. Near-neutral surface charge and hydrophilicity prevent mineral encrustation of Fe-oxidizing micro-organisms.

    Science.gov (United States)

    Saini, G; Chan, C S

    2013-03-01

    Microbial survival in mineralizing environments depends on the ability to evade surface encrustation by minerals, which could obstruct nutrient uptake and waste output. Some organisms localize mineral precipitation away from the cell; however, cell surface properties - charge and hydrophobicity - must also play a role in preventing surface mineralization. This is especially relevant for iron-oxidizing bacteria (FeOB), which face an encrustation threat from both biotic and abiotic mineralization. We used electron microscopy and surface characterization techniques to study the surfaces of two stalk-forming neutrophilic FeOB: the marine Zetaproteobacterium Mariprofundus ferrooxydans PV-1 and the recently isolated freshwater Betaproteobacterium Gallionellales strain R-1. Both organisms lack detectable iron on cell surfaces. Live and azide-inhibited M. ferrooxydans PV-1 cells had small negative zeta potentials (-0.34 to -2.73 mV), over the pH range 4.2-9.4; Gallionellales strain R-1 cells exhibited an even smaller zeta potential (-0.10 to -0.19 mV) over pH 4.2-8.8. Cells have hydrophilic surfaces, according to water contact angle measurements and microbial adhesion to hydrocarbons tests. Thermodynamic and extended Derjaguin-Landau-Verwey-Overbeek (XDLVO) calculations showed that as low charge causes low electrostatic attraction, hydrophilic repulsion dominates cell-mineral interactions. Therefore, we conclude that surface properties help enable these FeOB to survive in highly mineralizing environments. Given both mineral-repelling surface properties and the ability to sequester Fe(III) biominerals in an organomineral stalk, these two FeOB have a well-coordinated system to localize both biotic and abiotic mineral distribution. © 2012 Blackwell Publishing Ltd.

  4. Mathematical model for bone mineralization

    Directory of Open Access Journals (Sweden)

    Svetlana V Komarova

    2015-08-01

    Full Text Available Defective bone mineralization has serious clinical manifestations, including deformities and fractures, but the regulation of this extracellular process is not fully understood. We have developed a mathematical model consisting of ordinary differential equations that describe collagen maturation, production and degradation of inhibitors, and mineral nucleation and growth. We examined the roles of individual processes in generating normal and abnormal mineralization patterns characterized using two outcome measures: mineralization lag time and degree of mineralization. Model parameters describing the formation of hydroxyapatite mineral on the nucleating centers most potently affected the degree of mineralization, while the parameters describing inhibitor homeostasis most effectively changed the mineralization lag time. Of interest, a parameter describing the rate of matrix maturation emerged as being capable of counter-intuitively increasing both the mineralization lag time and the degree of mineralization. We validated the accuracy of model predictions using known diseases of bone mineralization such as osteogenesis imperfecta and X-linked hypophosphatemia. The model successfully describes the highly non-linear mineralization dynamics, which includes an initial lag phase when osteoid is present but no mineralization is evident, then fast primary mineralization, followed by secondary mineralization characterized by a continuous slow increase in bone mineral content. The developed model can potentially predict the function for a mutated protein based on the histology of pathologic bone samples from mineralization disorders of unknown etiology.

  5. A new genetic understanding for the mineralized breccia from the uranium deposit No.320

    International Nuclear Information System (INIS)

    Min Maozhong; Wang Xiangyun; Shen Baopei; Wen Guangdou; Fan Tao

    1996-01-01

    The hydrothermal cryptoexplosion was found in the uranium deposit No.320 for the first time. A polygenetic understanding is presented that the mineralized breccia in the deposit is mainly attributed to tectonite genesis and secondarily attributed to the hydrothermal cryptoexplosion. Geodes in breccia are of multigenesis, of these, the geodes from tectonic breccia are the most important, other geodes may be attributed to the hydrothermal cryptoexplosion, dissolution and dropping (stripping) of coarse biological fossils, paleokarst and modern hot spring water corrosion, dissolution of pyrite in rocks, etc. It is inferred that the original rocks of silicified breccia are silicalite, carbonaceous shale and carbonaceous pelitic limestone rich in biogenic debris

  6. Zeolite-Y entrapped Ru(III and Fe(III complexes as heterogeneous catalysts for catalytic oxidation of cyclohexane reaction

    Directory of Open Access Journals (Sweden)

    Chetan K. Modi

    2017-02-01

    Full Text Available Catalysis is probably one of the greatest contributions of chemistry to both economic growth and environmental protection. Herein we report the catalytic behavior of zeolite-Y entrapped Ru(III and Fe(III complexes with general formulae [M(VTCH2·2H2O]+-Y and [M(VFCH2·2H2O]+-Y [where, VTCH = vanillin thiophene-2-carboxylic hydrazone and VFCH = vanillin furoic-2-carboxylic hydrazone] over the oxidation of cyclohexane forming cyclohexanone and cyclohexanol. The samples were corroborated by various physico-chemical techniques. These zeolite-Y based complexes are stable and recyclable under current reaction conditions. Amongst them, [Ru(VTCH2⋅2H2O]+-Y showed higher catalytic activity (41.1% with cyclohexanone (84.6% selectivity.

  7. A multifunctional three-fold interpenetrated coordination polymer showing excellent luminescent sensing for Cr(VI)/ Fe(III) and photocatalytic properties

    Science.gov (United States)

    Zhu, Zheng; Wang, Mei; Xu, Cun-gang; Zong, Zi-ao; Zhang, Dong-mei; Bi, Shuang-yu; Fan, Yu-hua

    2017-12-01

    A three-fold interpenetrated coordination polymer [Cd2(L)(bibp)3]n (1) (H4L = 5,5‧-(1,4-phenylenebis(methoxy))diisophthalic acid, bibp = 4,4'-bis(imidazolyl)biphenyl) has been rationally constructed, successfully solvothermally synthesized and fully characterized. Complex 1 shows a 3D three-fold interpenetrated novel topological framework with the point symbol (4. 69)2(42. 62. 7. 8), and represents a variety of potential applications. Luminescence studies demonstrate that 1 has high selectivity and sensitivity for pollutant Cr(VI) (CrO42- and Cr2O72-) anion and Fe(III) cation; Photocatalytic studies show that 1 exhibits great degradation activity of three organic dyes (methylene blue (MB), Rhodamine B (RhB) and MalachiteGreen oxalate (MGO)). Furthermore, the possible mechanisms of the luminescent quench and photocatalytic properties have been deduced.

  8. Desulfovibrio frigidus sp. nov. and Desulfovibrio ferrireducens sp. nov., psychrotolerant bacteria isolated from Arctic fjord sediments (Svalbard) with the ability to reduce Fe(III)

    DEFF Research Database (Denmark)

    Vandieken, Verona; Knoblauch, Christian; Jørgensen, Bo Barker

    2006-01-01

    fermentation products such as hydrogen, formate and lactate with sulfate as the electron acceptor. Sulfate could be replaced by sulfite, thiosulfate or elemental sulfur. Poorly crystalline and soluble Fe(III) compounds were reduced in sulfate-free medium, but no growth occurred under these conditions....... In the absence of electron acceptors, fermentative growth was possible. The pH optimum for the strains was around 7.1. The DNA G+C contents were 43.3 and 42.0 mol% for strains 18T and 61T, respectively. Strains 18T, 61T and 77 were most closely related to Desulfovibrio hydrothermalis (95.0-95.7 % 16S rRNA gene...

  9. Recrystallization of biogenic carbonates in soils: consequences for palaeological studies

    Science.gov (United States)

    Zamanian, Kazem; Pustovoytov, Konstantin; Kuzyakov, Yakov

    2015-04-01

    The isotopic signatures of biogenic carbonate (BC) in fossils are commonly used to assess environmental conditions during the life time of organisms, their diets and extinction periods. As a proxy, BC represents in many cases the only alternative to organic matter. However, BC in fossils may dissolve in embedded matrix and recrystallize with CO2 respired by roots and microorganisms. Consequently, isotopic composition of BC can be re-equilibrated and the original paleoenvironmental signal may be lost. The dynamics of these processes still remains poorly understood. Here the results of BC recrystallization under controlled conditions have been presented. We aimed 1) To determine the recrystallization amounts of BC as a function of time, 2) To investigate the effects of geogenic carbonates (GC) availability in embedded matrix on recrystallization rate of BC and 3) To evaluate the effects of organic matter (OM) presence in the BC structure on its recrystallization. Loess and a loamy soil were selected as carbonate containing and carbonate free matrixes, respectively. Shells of 'Pacific little-neck clams (Protothaca staminea)' were selected as BC. To evaluate the role of OM presence in the BC structure, heated (550?C) and not heated shells were used. The shells were washed by means of ultrasonic and crashed to a size of 2-2.5 mm. The 14C labeled CO2 (pCO2= 2%) was injected into the airtight bottles. The samples were incubated at room temperature and water content of 60% of water holding capacity of matrixes for 1, 3, 10, 21 and 56 days. At each time the 14C activity was measured in bottle air, dissolved organic and inorganic carbon, matrixes and the shells. The recrystallization of shells started even after one day of incubation. However, the amounts of recrystallization were increased by the time. The recrystallization of CaCO3 was higher in shells without OM. Elimination of OM probably increases the porosity of shell structure and led to better water penetration into

  10. The mineral economy of Brazil--Economia mineral do Brasil

    Science.gov (United States)

    Gurmendi, Alfredo C.; Barboza, Frederico Lopes; Thorman, Charles H.

    1999-01-01

    This study depicts the Brazilian government structure, mineral legislation and investment policy, taxation, foreign investment policies, environmental laws and regulations, and conditions in which the mineral industry operates. The report underlines Brazil's large and diversified mineral endowment. A total of 37 mineral commodities, or groups of closely related commodities, is discussed. An overview of the geologic setting of the major mineral deposits is presented. This report is presented in English and Portuguese in pdf format.

  11. Synthesis, physicochemical characterization, DFT calculation and biological activities of Fe(III) and Co(II)-omeprazole complexes. Potential application in the Helicobacter pylori eradication

    Science.gov (United States)

    Russo, Marcos G.; Vega Hissi, Esteban G.; Rizzi, Alberto C.; Brondino, Carlos D.; Salinas Ibañez, Ángel G.; Vega, Alba E.; Silva, Humberto J.; Mercader, Roberto; Narda, Griselda E.

    2014-03-01

    The reaction between the antiulcer agent omeprazole (OMZ) with Fe(III) and Co(II) ions was studied, observing a high ability to form metal complexes. The isolated microcrystalline solid complexes were characterized by elemental analysis, X-ray powder diffraction (XRPD), Scanning Electron Microscopy (SEM), magnetic measurements, thermal study, FTIR, UV-Visible, Mössbauer, electronic paramagnetic resonance (EPR), and DFT calculations. The metal-ligand ratio for both complexes was 1:2 determined by elemental and thermal analysis. FTIR spectroscopy showed that OMZ acts as a neutral bidentate ligand through the pyridinic nitrogen of the benzimidazole ring and the oxygen atom of the sulfoxide group, forming a five-membered ring chelate. Electronic, Mössbauer, and EPR spectra together with magnetic measurements indicate a distorted octahedral geometry around the metal ions, where the coordination sphere is completed by two water molecules. SEM and XRPD were used to characterize the morphology and the crystal nature of the complexes. The most favorable conformation for the Fe(III)-OMZ and Co(II)-OMZ complexes was obtained by DFT calculations by using B3LYP/6-31G(d)&LanL2DZ//B3LYP/3-21G(d)&LanL2DZ basis set. Studies of solubility along with the antibacterial activity against Helicobacter pylori for OMZ and its Co(II) and Fe(III) complexes are also reported. Free OMZ and both metal complexes showed antibacterial activity against H. pylori. Co(II)-OMZ presented a minimal inhibitory concentration ˜32 times lower than that of OMZ and ˜65 lower than Fe(III)-OMZ, revealing its promising potential use for the treatment of gastric pathologies associated with the Gram negative bacteria. The morphological changes observed in the cell membrane of the bacteria after the incubation with the metal-complexes were also analyzed by SEM microscopy. The antimicrobial activity of the complexes was proved by the viability test.

  12. Speciative Determination of Dissolved Inorganic Fe(II, Fe(III and Total Fe in Natural Waters by Coupling Cloud Point Extraction with FAAS

    Directory of Open Access Journals (Sweden)

    Ramazan GÜRKAN

    2013-12-01

    Full Text Available A new cloud point extraction (CPE method for the preconcentration of trace iron speciation in natural waters prior to determination by flame atomic absorption spectrometry (FAAS was developed in the present study. In this method, Fe(II sensitively and selectively reacts with Calcon carboxylic acid (CCA in presence of cetylpyridinium chloride (CPC yielding a hydrophobic complex at pH 10.5, which is then entrapped in surfactant-rich phase. Total Fe was accurately and reliably determined after the reduction of Fe(III to Fe(II with sulfite. The amount of Fe(III in samples was determined from the difference between total Fe and Fe(II. CPC was used not only as an auxiliary ligand in CPE, but also as sensitivity enhancement agent in FAAS. The nonionic surfactant, polyethylene glycol tert-octylphenyl ether (Triton X-114 was used as an extracting agent. The analytical variables affecting CPE efficiency were investigated in detail. The preconcentration/enhancement factors of 50 and 82 respectively, were obtained for the preconcentration of Fe(II with 50 mL solution. Under the optimized conditions, the detection limit of Fe(II in linear range of 0.2-60 μg L-1 was 0.06 μg L-1. The relative standard deviation was 2.7 % (20 μg L-1, N: 5, recoveries for Fe(II were in range of 99.0-102.0% for all water samples including certified reference materials (CRMs. In order to verify its accuracy, two CRMs were analyzed and the results obtained were statistically in good agreement with the certified values.

  13. Speciative Determination of Dissolved Inorganic Fe(II), Fe(III) and Total Fe in Natural Waters by Coupling CPE with FAAS

    International Nuclear Information System (INIS)

    Gurkan, R.; Altunay, N.

    2013-01-01

    A new cloud point extraction (CPE) method for the preconcentration of trace iron speciation in natural waters prior to determination by flame atomic absorption spectrometry (FAAS) was developed in the present study. In this method, Fe(II) sensitively and selectively reacts with Calcon carboxylic acid (CCA) in presence of cetylpyridinium chloride (CPC) yielding a hydrophobic complex at pH 10.5, which is then entrapped in surfactant-rich phase. Total Fe was accurately and reliably determined after the reduction of Fe(III) to Fe(II) with sulfite. The amount of Fe(III) in samples was determined from the difference between total Fe and Fe(II). CPC was used not only as an auxiliary ligand in CPE, but also as sensitivity enhancement agent in FAAS. The nonionic surfactant, polyethylene glycol tert-octylphenyl ether (Triton X-114) was used as an extracting agent. The analytical variables affecting CPE efficiency were investigated in detail. The preconcentration/enhancement factors of 50 and 82 respectively, were obtained for the preconcentration of Fe(II) with 50 mL solution. Under the optimized conditions, the detection limit of Fe(II) in linear range of 0.2-60 μg L/sup -1/ was 0.06 μg L/sup -1/. The relative standard deviation was 2.7 percentage (20 μg L/sup -1/, N: 5), recoveries for Fe(II) were in range of 99.0-102.0 percentage for all water samples including certified reference materials (CRMs). In order to verify its accuracy, two CRMs were analyzed and the results obtained were statistically in good agreement with the certified values. (author)

  14. Assessing the Biological Contribution to Mineralized Cap Formation in the Little Hot Creek Hot Spring System

    Science.gov (United States)

    Floyd, J. G.; Beeler, S. R.; Mors, R. A.; Kraus, E. A.; 2016, G.; Piazza, O.; Frantz, C. M.; Loyd, S. J.; Berelson, W.; Stevenson, B. S.; Marenco, P. J.; Spear, J. R.; Corsetti, F. A.

    2016-12-01

    Hot spring environments exhibit unique redox/physical gradients that may create favorable conditions for the presence of life and commonly contain mineral precipitates that could provide a geologic archive of such ecosystems on Earth and potentially other planets. However, it is critical to discern biologic from abiotic formation mechanisms if hot spring-associated minerals are to be used as biosignatures. The study of modern hot spring environments where mineral formation can be directly observed is necessary to better interpret the biogenicity of ancient/extraterrestrial examples. Little Hot Creek (LHC), a hot spring located in the Long Valley Caldera, California, contains mineral precipitates composed of a carbonate base covered with amorphous silica and minor carbonate in close association with microbial mats/biofilms. Geological, geochemical, and microbiological techniques were integrated to investigate the role of biology in mineral formation at LHC. Geochemical measurements indicate that the waters of the spring are near equilibrium with respect to carbonate and undersaturated with respect to silica, implying additional processes are necessary to initiate cap formation. Geochemical modeling, integrating elemental and isotopic data from hot spring water and mineral precipitates, indicate that the abiotic processes of degassing and evaporation drive mineral formation at LHC, without microbial involvement. However, petrographic analysis of LHC caps revealed microbial microfabrics within silica mineral phases, despite the fact that microbial metabolism was not required for mineral precipitation. Our results show that microorganisms in hot spring environments can shape mineral precipitates even in the absence of a control on authigenesis, highlighting the need for structural as well as geochemical investigation in similar systems.

  15. 75 FR 80947 - Conflict Minerals

    Science.gov (United States)

    2010-12-23

    ... exercise due diligence on the source and chain of custody of its conflict minerals. These due diligence... establishing the source and chain of custody of such minerals.'' Further, the Conflict Minerals Report must... measures it had taken to exercise due diligence on the source and chain of custody of its conflict minerals...

  16. Evidence for Biogenic Iron in Ediacaran Limestones of the Yenisei Ridge Vorogovka Series (South-Western Framing of the Siberian Craton).

    Science.gov (United States)

    Vinogradov, E.; Kosareva, L.; Metelkin, D. V.; Vishnevskaya, I.

    2017-12-01

    The composition and origin of magnetic minerals are used for reconstructing paleogeography and changes in paleoenvironments. Ediacaran limestones of the Vorogovka Series were studied in the Yenisei Ridge. Rock magnetism of the upper part of the Vorogovka Series completely depends on terrigenous admixture of iron. Non-carbonate residue consists of quartz, plagioclase, muscovite, Fe-Mg chlorite, smectite and pyrite. A prominent positive correlation is observed between the Fe content (1550…9350 ppm) and the amount of insoluble residue. Magnetization of the lower part of Vorogovka Series is due to authigenic iron. There are several indirect indications of the presence of magnetotactic bacteria and seaweed remains in these limestones. While Fe content is high (1200…8330 ppm), Fe-hydroxides, pyrite and other minerals indicating secondary transformations were not detected. Thus, iron was included in the carbonate material during sedimentation. There is no correlation between iron content and the amount of insoluble residue, which indicates that iron could not have been taken from terrigenous admixture. Study of the dependence of magnetic susceptibility from temperature in inert atmosphere (argon) revealed magnetic minerals with demagnetization temperatures of 320°C and 580°C. The former may correspond to greigite (Curie Temperature 307°C) or hexagonal pyrrhotine (325°C). The latter indicates magnetite (Curie Temperature 586°C) which may be authigenic or newly formed during the experiment. Both magnetite and greigite, are major biogenic minerals produced by magnetotactic bacteria. The main environment of modern magnetotactic bacteria is microaerophilic habitat. Therefore, their abundant presence in the Ediacaran sediments is quite natural. All of these are preliminary conclusions until bacteria can be visualized by electron microscopy, which is an ongoing. The work was supported by the Ministry of Education and Science of Russia 5.2324.2017/4.6 and the RFBR 15-05-01428.

  17. Sediment waves with a biogenic twist in Pleistocene cool water carbonates, Great Australian Bight

    DEFF Research Database (Denmark)

    Anderskouv, Kresten; Surlyk, Finn; Huuse, Mads

    2010-01-01

    -parallel to contours immediately off the shelf–slope break. They are asymmetrical, showing up-slope migration, and mainly occur in trains. The sediment waves were drilled during ODP leg 182 in 1998, and were interpreted as biogenic reef mounds. New high-quality seismic and multibeam bathymetry data were acquired...

  18. CHARACTERIZATION OF BIOGENIC, INTERMEDIATE AND PHYSICOGENIC SOIL AGGREGATES OF AREAS IN THE BRAZILIAN ATLANTIC FOREST

    Directory of Open Access Journals (Sweden)

    JÚLIO CÉSAR FEITOSA FERNANDES

    2017-01-01

    Full Text Available Aggregate formation and stability are related to soil quality, contributing significantly to the carbon storage and nutrient maintenance capacities of the soil. Soil aggregates are formed by two different process: physicogenic, related to moistening and drying cycles and input of organic matter; and biogenic, related to the action of macrofauna organisms and roots. The objective this work was to classify aggregates according to their formation process, quantify and compare organic carbon contents in humic substances and assess the stability of aggregates formed by different processes, in areas with different coverage in the Mid Paraiba Valley, Pinheiral, State of Rio de Janeiro, Brazil. Aggregated soil samples were collected at a depth of 0-10 cm, in a Cambisol (Cambissolo Háplico Tb Distrófico under four plant covers: secondary forest in advanced (SFAS, medium (SFMS and initial (SFIS successional stages and managed mixed pasture (MMP. Aggregates were classified and identified into three morphological classes (physicogenic, biogenic and intermediate. The variables evaluated were mean weight diameter (MWD and geometric mean diameter (GMD of aggregates, chemical fractions of organic matter, total organic carbon (TOC and humic substances: humin (C-HUM humic acid (C-FAH and fulvic acid (C-FAF. Biogenic aggregates were found in smaller quantities and showed higher TOC, C-HUM and C-FAH, compared to intermediate and physicogenic aggregates. Thus, biogenic aggregates have potential to be used as soil quality indicators for structured environments, which are able to maintain its intrinsic formation processes.

  19. Land use change affects biogenic silica pool distribution in a subtropical soil toposequence

    Science.gov (United States)

    Unzué-Belmonte, Dácil; Ameijeiras-Mariño, Yolanda; Opfergelt, Sophie; Cornelis, Jean-Thomas; Barão, Lúcia; Minella, Jean; Meire, Patrick; Struyf, Eric

    2017-07-01

    Land use change (deforestation) has several negative consequences for the soil system. It is known to increase erosion rates, which affect the distribution of elements in soils. In this context, the crucial nutrient Si has received little attention, especially in a tropical context. Therefore, we studied the effect of land conversion and erosion intensity on the biogenic silica pools in a subtropical soil in the south of Brazil. Biogenic silica (BSi) was determined using a novel alkaline continuous extraction where Si / Al ratios of the fractions extracted are used to distinguish BSi and other soluble fractions: Si / Al > 5 for the biogenic AlkExSi (alkaline-extractable Si) and Si / Al soils depending on the slope of the study site (10-53 %), with faster depletion in steeper sites. We show that higher erosion in steeper sites implies increased accumulation of biogenic Si in deposition zones near the bottom of the slope, where rapid burial can cause removal of BSi from biologically active zones. Our study highlights the interaction of erosion strength and land use for BSi redistribution and depletion in a soil toposequence, with implications for basin-scale Si cycling.

  20. Effect of garlic, black seed and Biogen as immunostimulants on the ...

    African Journals Online (AJOL)

    Three dosage levels of black seed, garlic and commercial Biogen were administered for three months in summer and six months in winter to test their stimulation effect on growth, survival and response to challenge infection in Oreochromis niloticus. At the end of summer, no significant difference was observed in the growth ...

  1. Magnetically-modified natural biogenic iron oxides for organic xenobiotics removal

    Czech Academy of Sciences Publication Activity Database

    Šafařík, Ivo; Filip, J.; Horská, Kateřina; Nowakova, M.; Tuček, J.; Šafaříková, Miroslava; Hashimoto, H.; Takada, J.; Zbořil, R.

    2015-01-01

    Roč. 12, č. 2 (2015), s. 673-682 ISSN 1735-1472 R&D Projects: GA MŠk(CZ) LH11111; GA MŠk LH12190 Institutional support: RVO:67179843 Keywords : Biogenic iron oxides * Leptothrix ochracea * Magnetic fluid * Magnetic adsorbents * Xenobiotics Subject RIV: EI - Biotechnology ; Bionics Impact factor: 2.344, year: 2015

  2. BIOGENIC VOLATILE ORGANIC COMPOUND EMISSIONS FROM A LOWLAND TROPICAL WET FOREST IN COSTA RICA

    Science.gov (United States)

    Twenty common plant species were screened for emissions of biogenic volatile organic compounds (BVOCS) at a lowland tropical wet forest site in Costa Rica. Ten of the species. examined emitted substantial quantities of isoprene. These species accounted for 35-50% of the total bas...

  3. Crystal and fine structural transformation of Heat-treated biogenic manganese oxide

    Czech Academy of Sciences Publication Activity Database

    Kimura, N.; Hashimoto, H.; Miyata, N.; Nishina, Y.; Kusano, Y.; Ikeda, Y.; Nakanishi, Y.; Fujii, T.; Šafařík, Ivo; Šafaříková, Miroslava; Takada, J.

    2013-01-01

    Roč. 60, č. 3 (2013), s. 92-98 ISSN 0532-8799 R&D Projects: GA MŠk(CZ) LH11111 Institutional support: RVO:67179843 Keywords : microorganisms * biogenic manganese oxides * phase transitions * nano-sheets * microstructures Subject RIV: EH - Ecology, Behaviour

  4. The Rate-equation for Biogenic Silica Dissolution in Seawater – New Hypotheses

    NARCIS (Netherlands)

    Truesdale, V.W.; Greenwood, J.E.; Rendell, A.R.

    2005-01-01

    This paper investigates the kinetics of biogenic silica dissolution in seawater, through batch dissolution, where the reaction is observed as the increase in dissolved silicic acid concentration with time. It utilises new data from dissolution of the marine diatom Cyclotella cryptica, and the

  5. Tidal marshes and biogenic silica recycling at the land-sea interface

    NARCIS (Netherlands)

    Struyf, E.; Dausse, A.; van Damme, S.; Bal, K.; Gribsholt, B.; Boschker, H.T.S.; Meire, P.

    2006-01-01

    We studied the seasonal exchange of biogenic silica (BSi) and dissolved silica (DSi) between a freshwater and a saltwater tidal marsh and the adjacent coastal waters. Export of DSi was observed from both tidal marshes, whereas BSi was imported in association with suspended solids. The export of DSi

  6. Biogenic-amine acetylation: an additional function of the N-acetyltransferase from Fasciola hepatica.

    Science.gov (United States)

    Aisien, S O; Walter, R D

    1993-01-01

    The previously described polyamine N-acetyltransferase from Fasciola hepatica has been observed to have an additional function, the acetylation of biogenic amines. The activities for biogenic amines, diamines and polyamines were in a constant ratio throughout the purification process. Biogenic amines found to be substrates for the enzyme included tyramine, tryptamine, beta-phenylethylamine and histamine, with Km values of 0.12 mM, 0.26 mM, 0.30 mM and 0.76 mM respectively. Octopamine, 5-hydroxytryptamine and alpha-phenylethylamine were also acceptable as substrates, though to a lesser degree. The optimum pH for biogenic-amine acetylation was 7.5, and CoA was inhibitory to the process, with a Ki of 5.5 microM. N-Acetylation appears to play a major role in the amine metabolism of this trematode. We presume that acetylation represents the process by which the parasite inactivates excess amines. PMID:8489501

  7. Enhancement of Biogenic Coalbed Methane Production and Back Injection of Coalbed Methane Co-Produced Water

    Energy Technology Data Exchange (ETDEWEB)

    Song Jin

    2007-05-31

    Biogenic methane is a common constituent in deep subsurface environments such as coalbeds and oil shale beds. Coalbed methane (CBM) makes significant contributions to world natural gas industry and CBM production continues to increase. With increasing CBM production, the production of CBM co-produced water increases, which is an environmental concern. This study investigated the feasibility in re-using CBM co-produced water and other high sodic/saline water to enhance biogenic methane production from coal and other unconventional sources, such as oil shale. Microcosms were established with the selected carbon sources which included coal, oil shale, lignite, peat, and diesel-contaminated soil. Each microcosm contained either CBM coproduced water or groundwater with various enhancement and inhibitor combinations. Results indicated that the addition of nutrients and nutrients with additional carbon can enhance biogenic methane production from coal and oil shale. Methane production from oil shale was much greater than that from coal, which is possibly due to the greater amount of available Dissolved Organic Carbon (DOC) from oil shale. Inconclusive results were observed from the other sources since the incubation period was too low. WRI is continuing studies with biogenic methane production from oil shale.

  8. Biocompatibility assessment of rice husk-derived biogenic silica nanoparticles for biomedical applications.

    Science.gov (United States)

    Alshatwi, Ali A; Athinarayanan, Jegan; Periasamy, Vaiyapuri Subbarayan

    2015-02-01

    Synthetic forms of silica have low biocompatibility, whereas biogenic forms have myriad beneficial effects in current toxicological applications. Among the various sources of biogenic silica, rice husk is considered a valuable agricultural biomass material and a cost-effective resource that can provide biogenic silica for biomedical applications. In the present study, highly pure biogenic silica nanoparticles (bSNPs) were successfully harvested from rice husks using acid digestion under pressurized conditions at 120°C followed by a calcination process. The obtained bSNPs were subjected to phase identification analysis using X-ray diffraction, which revealed the amorphous nature of the bSNPs. The morphologies of the bSNPs were observed using transmission electron microscopy (TEM), which revealed spherical particles 10 to 30 nm in diameter. Furthermore, the biocompatibility of the bSNPs with human lung fibroblast cells (hLFCs) was investigated using a viability assay and assessing cellular morphological changes, intracellular ROS generation, mitochondrial transmembrane potential and oxidative stress-related gene expression. Our results revealed that the bSNPs did not have any significant incompatibility in these in vitro cell-based approaches. These preliminary findings suggest that bSNPs are biocompatible, could be the best alternative to synthetic forms of silica and are applicable to food additive and biomedical applications. Copyright © 2014 Elsevier B.V. All rights reserved.

  9. Biogenic, biomass and biofuel sources of trace gases in southern Africa

    CSIR Research Space (South Africa)

    Otter, LB

    2001-03-01

    Full Text Available Biogenic processes in southern African savannas are estimated to produce 1.0 Tg NO yr(-1), 44.2-87.8 Tg C yr(-1) as non-methane hydrocarbons (NMHCs) and to consume 0.23 Tg CH4 yr(-1). Floodplains and wetlands in southern Africa are estimated...

  10. Radiocarbon AMS determination of the biogenic component in CO2 emitted from waste incineration

    International Nuclear Information System (INIS)

    Calcagnile, L.; Quarta, G.; D’Elia, M.; Ciceri, G.; Martinotti, V.

    2011-01-01

    The thermal utilization of waste for energy production is gaining importance in European countries. Nevertheless, the combustion of waste leads to significant CO 2 emissions in the atmosphere which, depending on the fraction of biogenic and fossil materials, have to be only partially accounted for the national greenhouse gas inventory. For this reason the development of proper methodologies for the measurement of the biogenic fraction in the combusted waste is an active research field. In fact the determination of the radiocarbon concentration in the carbon dioxide stack emissions allows to have a direct indication of the biogenic component in the burned fuel. We present the results of the AMS radiocarbon analyses carried out on carbon dioxide sampled at the stack of three power plants located in Northern Italy burning natural gas, landfill biogas and SRF (Solid Recovered Fuel) derived from MSW (Municipal Solid Waste). The sampling apparatus and the applied processing protocols are described together with the calculation procedures used to determine, from the measured radiocarbon concentrations, the proportion of biogenic and fossil component in the flue gas and in the combusted fuel. The results confirm the high potentialities of this approach in the analysis of industrial CO 2 emissions.

  11. An approach for verifying biogenic greenhouse gas emissions inventories with atmospheric CO2 concentration data

    Science.gov (United States)

    Stephen M Ogle; Kenneth Davis; Thomas Lauvaux; Andrew Schuh; Dan Cooley; Tristram O West; Linda S Heath; Natasha L Miles; Scott Richardson; F Jay Breidt; James E Smith; Jessica L McCarty; Kevin R Gurney; Pieter Tans; A Scott. Denning

    2015-01-01

    Verifying national greenhouse gas (GHG) emissions inventories is a critical step to ensure that reported emissions data to the United Nations Framework Convention on Climate Change (UNFCCC) are accurate and representative of a country's contribution to GHG concentrations in the atmosphere. Furthermore, verifying biogenic fluxes provides a check on estimated...

  12. Worldwide biogenic soil NOx emissions inferred from OMI NO2 observations

    NARCIS (Netherlands)

    Vinken, G.C.M.; Boersma, K.F.; Maasakkers, J.D.; Adon, M.; Martin, R.V.

    2014-01-01

    Biogenic NOx emissions from soils are a large natural source with substantial uncertainties in global bottom-up estimates (ranging from 4 to 15 Tg N yr-1). We reduce this range in emission estimates, and present a top-down soil NOx emission inventory for 2005 based on retrieved tropospheric NO2

  13. Foliar leaching, translocation, and biogenic emission of 35S in radiolabeled loblolly pines

    International Nuclear Information System (INIS)

    Garten, C.T. Jr.

    1990-01-01

    Foliar leaching, basipetal (downward) translocation, and biogenic emission of sulfur (S), as traced by 35 S, were examined in a field study of loblolly pines. Four trees were radiolabeled by injection with amounts of 35 S in the 6-8 MBq range, and concentrations in needle fall, stemflow, throughfall, and aboveground biomass were measured over a period of 15-20 wk after injection. The contribution of dry deposition to sulfate-sulfur (SO 4 2- -S) concentrations in net throughfall (throughfall SO 4 2- -S concentration minus that in incident precipitation) beneath all four trees was > 90%. Calculations indicated that about half of the summertime SO 2 dry deposition flux to the loblolly pines was fixed in the canopy and not subsequently leached by rainfall. Based on mass balance calculations, 35 S losses through biogenic emissions from girdled trees were inferred to be 25-28% of the amount injected. Estimates based on chamber methods and mass balance calculations indicated a range in daily biogenic S emission of 0.1-10 μg/g dry needles. Translocation of 35 S to roots in nongirdled trees was estimated to be between 14 and 25% of the injection. It is hypothesized that biogenic emission and basipetal translocation of S (and not foliar leaching) are important mechanisms by which forest trees physiologically adapt to excess S in the environment

  14. UNITED STATES LAND USE INVENTORY FOR ESTIMATING BIOGENIC OZONE PRECURSOR EMISSIONS

    Science.gov (United States)

    The U.S. Geological Survey's (USGS) Earth Resources Observation System (EROS) Data Center's (EDC) 1-km classified land cover data are combined with other land use data using a Geographic Information System (GIS) to create the Biogenic Emissions Landcover Database (BELD). The land...

  15. Impacts of Interannual Variability in Biogenic VOC Emissions near Transitional Ozone Production Regimes

    Science.gov (United States)

    Geddes, J.

    2017-12-01

    Due to successful NOx emission controls, summertime ozone production chemistry in urban areas across North America is transitioning from VOC-limited to increasingly NOx-limited. In some regions where ozone production sensitivity is in transition, interannual variability in surrounding biogenic VOC emissions could drive fluctuations in the prevailing chemical regime and modify the impact of anthropogenic emission changes. I use satellite observations of HCHO and NO2 column density, along with a long-term simulation of atmospheric chemistry, to investigate the impact of interannual variability in biogenic isoprene sources near large metro areas. Peak emissions of isoprene in the model can vary by up to 20-60% in any given year compared to the long term mean, and this variability drives the majority of the variability in simulated local HCHO:NO2 ratios (a common proxy for ozone production sensitivity). The satellite observations confirm increasingly NOx-limited chemical regimes with large interannual variability. In several instances, the model and satellite observations suggest that variability in biogenic isoprene emissions could shift summertime ozone production from generally VOC- to generally NOx- sensitive (or vice versa). This would have implications for predicting the air quality impacts of anthropogenic emission changes in any given year, and suggests that drivers of biogenic emissions need to be well understood.

  16. Future changes in biogenic isoprene emissions: how might they affect regional and global atmospheric chemistry?

    Science.gov (United States)

    Christine Wiedinmyer; Xuexi Tie; Alex Guenther; Ron Neilson; Claire. Granier

    2006-01-01

    Isoprene is emitted from vegetation to the atmosphere in significant quantities, and it plays an important role in the reactions that control tropospheric oxidant concentrations. As future climatic and land-cover changes occur, the spatial and temporal variations, as well as the magnitude of these biogenic isoprene emissions, are expected to change. This paper presents...

  17. Carbon-14 based determination of the biogenic fraction of industrial CO2 emissions : Application and validation

    NARCIS (Netherlands)

    Palstra, S. W. L.; Meijer, H. A. J.

    The C-14 method is a very reliable and sensitive method for industrial plants, emission authorities and emission inventories to verify data estimations of biogenic fractions of CO2 emissions. The applicability of the method is shown for flue gas CO2 samples that have been sampled in I-h intervals at

  18. Evolution of cyclonic eddies and biogenic fluxes in the northern Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Nuncio, M.; PrasannaKumar, S.

    -and-half to two-and-half times the annual mean flux, while the anomaly of peak episodic fluxes was at least equal to or greater than the magnitude of the seasonal flux value. Cyclonic eddies responsible for high biogenic flux during 1994 and 1996 were formed...

  19. Importance of particle formation to reconstructed water column biogenic silica fluxes

    NARCIS (Netherlands)

    Moriceau, B.; Gallinari, M.; Soetaert, K.E.R.; Ragueneau, O.

    2007-01-01

    The particles sinking out of the ocean's surface layer are made up of a mixture of living and dead algal cells, fecal pellets, and aggregates, while the parameters used to describe the behavior of biogenic silica (bSiO2) in today's models are experimentally determined on freely suspended diatoms

  20. Contribution of biogenic emissions to the formation of ozone and particulate matter in the eastern United States.

    Science.gov (United States)

    Pun, Betty K; Wu, Shiang-Yuh; Seigneur, Christian

    2002-08-15

    As anthropogenic emissions of ozone (O3) precursors, fine particulate matter (PM2.5), and PM2.5 precursors continue to decrease in the United States, the fraction of O3 and PM2.5 attributable to natural sources may become significant in some locations, reducing the efficacy that can be expected from future controls of anthropogenic sources. Modeling studies were conducted to estimate the contribution of biogenic emissions to the formation of O3 and PM2.5 in Nashville/TN and the northeastern United States. Two approaches were used to bound the estimates. In an anthropogenic simulation, biogenic emissions and their influence at the domain boundaries were eliminated. Contributions of biogenic compounds to the simulated concentrations of O3 and PM2.5 were determined by the deviation of the concentrations in the anthropogenic case from those in the base case. A biogenic simulation was used to assess the amounts of O3 and PM2.5 produced in an environment free from anthropogenic influences in emissions and boundary conditions. In both locations, the contribution of biogenic emissions to O3 was small (biogenic volatile organic compounds (VOC) emissions (65-89% of total VOC emissions). However, the production of O3 was much more sensitive to biogenic emissions in urban areas (22-34%). Therefore, the effects of biogenic emissions on O3 manifested mostly via their interaction with anthropogenic emissions of NOx. In the anthropogenic simulations, the average contribution of biogenic and natural sources to PM2.5 was estimated at 9% in Nashville/TN and 12% in the northeast domain. Because of the long atmospheric lifetimes of PM2.5, the contribution of biogenic/natural PM2.5 from the boundary conditions was higher than the contribution of biogenic aerosols produced within the domain. The elimination of biogenic emissions also affected the chemistry of other secondary PM2.5 components. Very little PM2.5 was formed in the biogenic simulations.

  1. Synthesis, magnetism and Mössbauer studies of tetranuclear heterometallic {Fe(III)2Ln2}(Ln = Gd, Dy, Tb) complexes: evidence of slow relaxation of magnetization in the terbium analogue.

    Science.gov (United States)

    Bag, Prasenjit; Goura, Joydeb; Mereacre, Valeriu; Novitchi, Ghenadie; Powell, Annie K; Chandrasekhar, Vadapalli

    2014-11-21

    A new family of tetranuclear heterometallic assemblies, [Fe(III)2Gd2(H2L)4(η(2)-NO3)2]·2ClO4·2CH3OH·2H2O (1), [Fe(III)2Dy2(H2L)4(η(2)-NO3)2]·2ClO4·2CH3OH·2H2O (2), [Fe(III)2Tb2(H2L)4(η(2)-NO3)2]·2ClO4·2CH3OH·2H2O (3), have been synthesized employing a multi-dentate Schiff-base ligand, (E)-2,2'-(2-hydroxy-3-((2-hydroxyphenylimino)methyl)-5-methylbenzylazanediyl)-diethanol (H4L), Fe(ClO4)2·6H2O, and Ln(III) nitrate salts. These compounds have been structurally characterized by various analytical and spectroscopic techniques. The molecular structures of 1-3 have been confirmed by single crystal X-ray crystallography. All the three complexes contain two Fe(III) ions at the periphery and two Ln(III) ions in the centre. The entire assembly is held together by four doubly deprotonated [LH2](2-) ligands. All the three complexes (1-3) are dicationic in nature and possess an overall Z-type topology. Magnetic measurements reveal the presence of predominant ferromagnetic coupling for all the three compounds at low temperature. The presence of a frequency-dependent out-of-phase signal in the imaginary part of the ac susceptibility plot suggests a slow relaxation of magnetization for 3 (Fe(III)2Tb2). Furthermore, the magnetization dynamics of all the three complexes have been corroborated by Mössbauer spectroscopy.

  2. Are iron-phosphate minerals a sink for phosphorus in anoxic Black Sea sediments?

    Science.gov (United States)

    Dijkstra, Nikki; Kraal, Peter; Kuypers, Marcel M M; Schnetger, Bernhard; Slomp, Caroline P

    2014-01-01

    Phosphorus (P) is a key nutrient for marine organisms. The only long-term removal pathway for P in the marine realm is burial in sediments. Iron (Fe) bound P accounts for a significant proportion of this burial at the global scale. In sediments underlying anoxic bottom waters, burial of Fe-bound P is generally assumed to be negligible because of reductive dissolution of Fe(III) (oxyhydr)oxides and release of the associated P. However, recent work suggests that Fe-bound P is an important burial phase in euxinic (i.e. anoxic and sulfidic) basin sediments in the Baltic Sea. In this study, we investigate the role of Fe-bound P as a potential sink for P in Black Sea sediments overlain by oxic and euxinic bottom waters. Sequential P extractions performed on sediments from six multicores along two shelf-to-basin transects provide evidence for the burial of Fe-bound P at all sites, including those in the euxinic deep basin. In the latter sediments, Fe-bound P accounts for more than 20% of the total sedimentary P pool. We suggest that this P is present in the form of reduced Fe-P minerals. We hypothesize that these minerals may be formed as inclusions in sulfur-disproportionating Deltaproteobacteria. Further research is required to elucidate the exact mineral form and formation mechanism of this P burial phase, as well as its role as a sink for P in sulfide-rich marine sediments.

  3. Evaluation of biogenic emission flux and its impact on oxidants and inorganic aerosols in East Asia

    Science.gov (United States)

    Han, K. M.; Song, C. H.; Park, R. S.; Woo, J.; Kim, H.

    2010-12-01

    As a major precursor during the summer season, biogenic species are of primary importance in the ozone and SOAs (secondary organic aerosols) formations. Isoprene and mono-terpene also influence the level of inorganic aerosols (i.e. sulfate and nitrate) by controlling OH radicals. However, biogenic emission fluxes are highly uncertain in East Asia. While isoprene emission fluxes from the GEIA (Global Emissions Inventory Activity) and POET (Precursors of Ozone and their Effects in the Troposphere) inventories estimate approximately 20 Tg yr-1 in East Asia, those from the MEGAN (Model of Emissions of Gases and Aerosols from Nature) and MOHYCAN (MOdel for Hydrocarbon emissions by the CANopy) estimate approximately 10 Tg yr-1 and 5 Tg yr-1, respectively. In order to evaluate and/or quantify the magnitude of biogenic emission fluxes over East Asia, the tropospheric HCHO columns obtained from the GOME (Global Ozone Monitoring Experiment) observations were compared with the HCHO columns from the CMAQ (Community Multi-scale Air Quality) simulations over East Asia. In this study, US EPA Models-3/CMAQ v4.5.1 model simulation using the ACE-ASIA (Asia Pacific Regional Aerosol Characterization Experiment) emission inventory for anthropogenic pollutants and GEIA, POET, MEGAN, and MOHYCAN emission inventories for biogenic species was carried out in conjunction with the Meteorological fields generated from the PSU/NCAR MM5 (Pennsylvania state University/National Center for Atmospheric Research Meso-scale Model 5) model for the summer episodes of the year 2002. In addition to an evaluation of the biogenic emission flux, we investigated the impact of the uncertainty in biogenic emission inventory on inorganic aerosol formations and variations of oxidants (OH, O3, and H2O2) in East Asia. In this study, when the GEIA and POET emission inventories are used, the CMAQ-derived HCHO columns are highly overestimated over East Asia, particularly South China compared with GOME-derived HCHO

  4. Enhanced SOA formation from mixed anthropogenic and biogenic emissions during the CARES campaign

    Directory of Open Access Journals (Sweden)

    J. E. Shilling

    2013-02-01

    Full Text Available The CARES campaign was conducted during June, 2010 in the vicinity of Sacramento, California to study aerosol formation and aging in a region where anthropogenic and biogenic emissions regularly mix. Here, we describe measurements from an Aerodyne High Resolution Aerosol Mass Spectrometer (AMS, an Ionicon Proton Transfer Reaction Mass Spectrometer (PTR-MS, and trace gas detectors (CO, NO, NOx deployed on the G-1 research aircraft to investigate ambient gas- and particle-phase chemical composition. AMS measurements showed that the particle phase is dominated by organic aerosol (OA (85% on average with smaller concentrations of sulfate (5%, nitrate (6% and ammonium (3% observed. PTR-MS data showed that isoprene dominated the biogenic volatile organic compound concentrations (BVOCs, with monoterpene concentrations generally below the detection limit. Using two different metrics, median OA concentrations and the slope of plots of OA vs. CO concentrations (i.e., ΔOA/ΔCO, we contrast organic aerosol evolution on flight days with different prevailing meteorological conditions to elucidate the role of anthropogenic and biogenic emissions on OA formation. Airmasses influenced predominantly by biogenic emissions had median OA concentrations of 2.2 μg m−3 and near zero ΔOA/ΔCO. Those influenced predominantly by anthropogenic emissions had median OA concentrations of 4.7 μg m−3 and ΔOA/ΔCO ratios of 35–44 μg m−3 ppmv. But, when biogenic and anthropogenic emissions mixed, OA levels were enhanced, with median OA concentrations of 11.4 μg m−3 and ΔOA/ΔCO ratios of 77–157 μg m−3 ppmv. Taken together, our observations show that production of OA was enhanced when anthropogenic emissions from Sacramento mixed with isoprene-rich air from the foothills. After considering several anthropogenic/biogenic interaction mechanisms, we conclude that NOx concentrations

  5. Performance of the JULES land surface model for UK Biogenic VOC emissions

    Science.gov (United States)

    Hayman, Garry; Comyn-Platt, Edward; Vieno, Massimo; Langford, Ben

    2017-04-01

    Emissions of biogenic non-methane volatile organic compounds (NMVOCs) are important for air quality and tropospheric composition. Through their contribution to the production of tropospheric ozone and secondary organic aerosol (SOA), biogenic VOCs indirectly contribute to climate forcing and climate feedbacks [1]. Biogenic VOCs encompass a wide range of compounds and are produced by plants for growth, development, reproduction, defence and communication [2]. There are both biological and physico-chemical controls on emissions [3]. Only a few of the many biogenic VOCs are of wider interest and only two or three (isoprene and the monoterpenes, α- and β-pinene) are represented in chemical transport models. We use the Joint UK Land Environment Simulator (JULES), the UK community land surface model, to estimate biogenic VOC emission fluxes. JULES is a process-based model that describes the water, energy and carbon balances and includes temperature, moisture and carbon stores [4, 5]. JULES currently provides emission fluxes of the 4 largest groups of biogenic VOCs: isoprene, terpenes, methanol and acetone. The JULES isoprene scheme uses gross primary productivity (GPP), leaf internal carbon and the leaf temperature as a proxy for the electron requirement for isoprene synthesis [6]. In this study, we compare JULES biogenic VOC emission estimates of isoprene and terepenes with (a) flux measurements made at selected sites in the UK and Europe and (b) gridded estimates for the UK from the EMEP/EMEP4UK atmospheric chemical transport model [7, 8], using site-specific or EMEP4UK driving meteorological data, respectively. We compare the UK-scale emission estimates with literature estimates. We generally find good agreement in the comparisons but the estimates are sensitive to the choice of the base or reference emission potentials. References (1) Unger, 2014: Geophys. Res. Lett., 41, 8563, doi:10.1002/2014GL061616; (2) Laothawornkitkul et al., 2009: New Phytol., 183, 27, doi

  6. Recent trends in the determination of biogenic amines in fermented beverages – A review

    Energy Technology Data Exchange (ETDEWEB)

    Ordóñez, José Luis; Troncoso, Ana Maria; García-Parrilla, Maria Del Carmen; Callejón, Raquel Maria, E-mail: rcallejon@us.es

    2016-10-05

    Biogenic amines (BA) are generally considered as a food hazard, even though there is not a threshold for these biomolecules in the European legislation, except for histamine in fishery products. These compounds are formed during the storage and processing of certain foods through microbiological activity, and when present in high concentrations, could have toxicological effects, causing health problems in consumers, especially to sensitive persons. This fact, in addition to the economical concern involved, makes it necessary to control the amounts of biogenic amines in foods. For all these reasons, literature on biogenic amines in different food products, especially in fermented beverages, is extensive. This review provides an overview of the most recent trends in the determination of biogenic amines in fermented beverages focusing on novelty, improvement and optimization of analytical methods. Hence, the different sample treatment procedures (including derivatization), the most important analytical techniques and the most frequent applications are described and discussed. Although biogenic amines have been determined in wine and other fermented beverages for decades, new advancements and technical possibilities have allowed to increase the accuracy and sensitivity of analytical methods, in order to overcome the challenges posed by the complex matrices and their high intrinsic variability. Thus, the different purposes of BA determination (food safety, production process or food microbiology research) and the most widely employed analytical techniques have been reviewed. - Highlights: • A critical review on analytical methods for BA in fermented beverages is presented. • Recent sample treatments and analytical techniques are described and discussed. • A previous derivatization is needed in most liquid chromatographic methods. • BA determination is related to food safety, production process or microbiology research.

  7. Modeling of microbial gas generation: application to the eastern Mediterranean “Biogenic Play”

    Energy Technology Data Exchange (ETDEWEB)

    Schneider, M.; Dubille, M.; Montadert, L.

    2016-07-01

    Biogenic gas is becoming increasingly important as an exploration target in the petroleum industry because it occurs in geologically predictable circumstances and in large quantities at shallow depths as free gas or gas hydrates. As accumulations of biogenic gas result in a subtle synchronization between early generation and early trapping, we integrated a macroscopic model of microbial gas generation within a 3D basin and petroleum system forward simulator. The macroscopic model is based on a microscopic model, which consists in a 1D sedimentary column that accounts for sedimentation, compaction, Darcy flow and Diffusion flow. The organic carbon is the only non-soluble element considered in this version of the model. The dissolved elements are O2, SO4 2-, H2, CH3COOH, and CH4. Methane is dissolved in water or present as a free phase if its concentration exceeds its solubility at given pressure and temperature. In this microscopic model, the transformation of substrate into biomass is described through a set of logistic equations coupled with the transport equations (advection and diffusion). Based on the microscopic considerations we developed the macroscopic model of low maturity/biogenic gas generation in which hydrocarbons are generated through first order kinetic reactions at low maturity. This macroscopic model is adapted to petroleum system modeling at basin scale with TemisFlow®, which aims to understand and predict hydrocarbon generation, migration, and accumulation. It is composed of: i) A source rock criteria which allow defining the biogenic gas source rocks potential and ii) A kinetic model of methane generation. The previous model has been successfully applied on different basins such as the Carupano Basin from the offshore Venezuela, the Magdalena Delta (offshore Colombia) and the offshore Vietnam where direct observations of low-maturity gas were available. Furthermore, it has been applied in the offshore Lebanon in order to check the viability of

  8. New procedure of selected biogenic amines determination in wine samples by HPLC

    Energy Technology Data Exchange (ETDEWEB)

    Piasta, Anna M.; Jastrzębska, Aneta, E-mail: aj@chem.uni.torun.pl; Krzemiński, Marek P.; Muzioł, Tadeusz M.; Szłyk, Edward

    2014-06-27

    Highlights: • We proposed new procedure for derivatization of biogenic amines. • The NMR and XRD analysis confirmed the purity and uniqueness of derivatives. • Concentration of biogenic amines in wine samples were analyzed by RP-HPLC. • Sample contamination and derivatization reactions interferences were minimized. - Abstract: A new procedure for determination of biogenic amines (BA): histamine, phenethylamine, tyramine and tryptamine, based on the derivatization reaction with 2-chloro-1,3-dinitro-5-(trifluoromethyl)-benzene (CNBF), is proposed. The amines derivatives with CNBF were isolated and characterized by X-ray crystallography and {sup 1}H, {sup 13}C, {sup 19}F NMR spectroscopy in solution. The novelty of the procedure is based on the pure and well-characterized products of the amines derivatization reaction. The method was applied for the simultaneous analysis of the above mentioned biogenic amines in wine samples by the reversed phase-high performance liquid chromatography. The procedure revealed correlation coefficients (R{sup 2}) between 0.9997 and 0.9999, and linear range: 0.10–9.00 mg L{sup −1} (histamine); 0.10–9.36 mg L{sup -1} (tyramine); 0.09–8.64 mg L{sup −1} (tryptamine) and 0.10–8.64 mg L{sup −1} (phenethylamine), whereas accuracy was 97%–102% (recovery test). Detection limit of biogenic amines in wine samples was 0.02–0.03 mg L{sup −1}, whereas quantification limit ranged 0.05–0.10 mg L{sup −1}. The variation coefficients for the analyzed amines ranged between 0.49% and 3.92%. Obtained BA derivatives enhanced separation the analytes on chromatograms due to the inhibition of hydrolysis reaction and the reduction of by-products formation.

  9. Biocompatibility assessment of rice husk-derived biogenic silica nanoparticles for biomedical applications

    International Nuclear Information System (INIS)

    Alshatwi, Ali A.; Athinarayanan, Jegan; Periasamy, Vaiyapuri Subbarayan

    2015-01-01

    Synthetic forms of silica have low biocompatibility, whereas biogenic forms have myriad beneficial effects in current toxicological applications. Among the various sources of biogenic silica, rice husk is considered a valuable agricultural biomass material and a cost-effective resource that can provide biogenic silica for biomedical applications. In the present study, highly pure biogenic silica nanoparticles (bSNPs) were successfully harvested from rice husks using acid digestion under pressurized conditions at 120 °C followed by a calcination process. The obtained bSNPs were subjected to phase identification analysis using X-ray diffraction, which revealed the amorphous nature of the bSNPs. The morphologies of the bSNPs were observed using transmission electron microscopy (TEM), which revealed spherical particles 10 to 30 nm in diameter. Furthermore, the biocompatibility of the bSNPs with human lung fibroblast cells (hLFCs) was investigated using a viability assay and assessing cellular morphological changes, intracellular ROS generation, mitochondrial transmembrane potential and oxidative stress-related gene expression. Our results revealed that the bSNPs did not have any significant incompatibility in these in vitro cell-based approaches. These preliminary findings suggest that bSNPs are biocompatible, could be the best alternative to synthetic forms of silica and are applicable to food additive and biomedical applications. - Highlights: • Simple, rapid and convenient process • Amorphous and spherical with 10–30 nm size SiO 2 nanoparticles were fabricated. • Biogenic silica nanoparticles showed biocompatibility. • bSNPs are an alternative to synthetic forms of silica

  10. Improved MEGAN predictions of biogenic isoprene in the contiguous United States

    Science.gov (United States)

    Wang, Peng; Schade, Gunnar; Estes, Mark; Ying, Qi

    2017-01-01

    Isoprene emitted from biogenic sources significantly contributes to ozone and secondary organic aerosol formation in the troposphere. The Model of Emissions of Gases and Aerosols from Nature (MEGAN) has been widely used to estimate isoprene emissions from local to global scales. However, previous studies have shown that MEGAN significantly over-predicts isoprene emissions in the contiguous United States (US). In this study, ambient isoprene concentrations in the US were simulated by the Community Multiscale Air Quality (CMAQ) model (v5.0.1) using biogenic emissions estimated by MEGAN v2.10 with several different gridded isoprene emission factor (EF) fields. Best isoprene predictions were obtained with the EF field based on the Biogenic Emissions Landcover Database v4 (BELD4) from US EPA for its Biogenic Emission Inventory System (BEIS) model v3.61 (MEGAN-BEIS361). A seven-month simulation (April to October 2011) of isoprene emissions with MEGAN-BEIS361 and ambient concentrations using CMAQ shows that observed spatial and temporal variations (both diurnal and seasonal) of isoprene concentrations can be well predicted at most non-urban monitors using isoprene emission estimation from the MEGAN-BEIS361 without significant biases. The predicted monthly average vertical column density of formaldehyde (HCHO), a reactive volatile organic compound with significant contributions from isoprene oxidation, generally agree with the spatial distribution of HCHO column density derived using satellite data collected by the Ozone Monitoring Instrument (OMI), although summer month vertical column densities in the southeast US were overestimated, which suggests that isoprene emission might still be overestimated in that region. The agreement between observation and prediction may be further improved if more accurate PAR values, such as those derived from satellite-based observations, were used in modeling the biogenic emissions.

  11. Recent trends in the determination of biogenic amines in fermented beverages – A review

    International Nuclear Information System (INIS)

    Ordóñez, José Luis; Troncoso, Ana Maria; García-Parrilla, Maria Del Carmen; Callejón, Raquel Maria

    2016-01-01

    Biogenic amines (BA) are generally considered as a food hazard, even though there is not a threshold for these biomolecules in the European legislation, except for histamine in fishery products. These compounds are formed during the storage and processing of certain foods through microbiological activity, and when present in high concentrations, could have toxicological effects, causing health problems in consumers, especially to sensitive persons. This fact, in addition to the economical concern involved, makes it necessary to control the amounts of biogenic amines in foods. For all these reasons, literature on biogenic amines in different food products, especially in fermented beverages, is extensive. This review provides an overview of the most recent trends in the determination of biogenic amines in fermented beverages focusing on novelty, improvement and optimization of analytical methods. Hence, the different sample treatment procedures (including derivatization), the most important analytical techniques and the most frequent applications are described and discussed. Although biogenic amines have been determined in wine and other fermented beverages for decades, new advancements and technical possibilities have allowed to increase the accuracy and sensitivity of analytical methods, in order to overcome the challenges posed by the complex matrices and their high intrinsic variability. Thus, the different purposes of BA determination (food safety, production process or food microbiology research) and the most widely employed analytical techniques have been reviewed. - Highlights: • A critical review on analytical methods for BA in fermented beverages is presented. • Recent sample treatments and analytical techniques are described and discussed. • A previous derivatization is needed in most liquid chromatographic methods. • BA determination is related to food safety, production process or microbiology research.

  12. Microbially mediated mineral carbonation

    Science.gov (United States)

    Power, I. M.; Wilson, S. A.; Dipple, G. M.; Southam, G.

    2010-12-01

    Mineral carbonation involves silicate dissolution and carbonate precipitation, which are both natural processes that microorganisms are able to mediate in near surface environments (Ferris et al., 1994; Eq. 1). (Ca,Mg)SiO3 + 2H2CO3 + H2O → (Ca,Mg)CO3 + H2O + H4SiO4 + O2 (1) Cyanobacteria are photoautotrophs with cell surface characteristics and metabolic processes involving inorganic carbon that can induce carbonate precipitation. This occurs partly by concentrating cations within their net-negative cell envelope and through the alkalinization of their microenvironment (Thompson & Ferris, 1990). Regions with mafic and ultramafic bedrock, such as near Atlin, British Columbia, Canada, represent the best potential sources of feedstocks for mineral carbonation. The hydromagnesite playas near Atlin are a natural biogeochemical model for the carbonation of magnesium silicate minerals (Power et al., 2009). Field-based studies at Atlin and corroborating laboratory experiments demonstrate the ability of a microbial consortium dominated by filamentous cyanobacteria to induce the precipitation of carbonate minerals. Phototrophic microbes, such as cyanobacteria, have been proposed as a means for producing biodiesel and other value added products because of their efficiency as solar collectors and low requirement for valuable, cultivable land in comparison to crops (Dismukes et al., 2008). Carbonate precipitation and biomass production could be facilitated using specifically designed ponds to collect waters rich in dissolved cations (e.g., Mg2+ and Ca2+), which would allow for evapoconcentration and provide an appropriate environment for growth of cyanobacteria. Microbially mediated carbonate precipitation does not require large quantities of energy or chemicals needed for industrial systems that have been proposed for rapid carbon capture and storage via mineral carbonation (e.g., Lackner et al., 1995). Therefore, this biogeochemical approach may represent a readily

  13. Biogenic Amine Formation and Microbiological Quality of Anchovy (Engraulis encrasicolus) Treated with Lavender and Lemon Balm Ethanol Extracts.

    Science.gov (United States)

    Özogul, Fatih; Öztekin, Rana; Kulawik, Piotr

    2017-05-01

    Biogenic amine formation and bacterial growth of vacuum-packed European anchovy treated with 1% lemon balm (LB) or lavender (LD) ethanol extracts was investigated. The treated samples were stored at 2 ± 1 °C for 11 d and analyzed for biogenic amines, total viable count, fecal coliform count, and lactic acid bacterial count. The analyses were done on 0, 4, 7, 9, and 11 d of storage. Both LB and LD extracts proved effective in reducing most biogenic amines, with histamine reduced by 3-fold compared to control. The calculated biogenic amine index showed that LB extract was the most effective in inhibiting the biogenic amine formation. The reduction in total viable count was low and the bacterial contamination reached more than 7 log cfu/g at the end of the storage period for all the samples. Moreover, the reduction in fecal coliform and lactic acid bacterial count by LB and LD extracts was below 1 log cfu/g. Treatment of European anchovy with LB and LD extracts proved to be a very effective preservation technique to reduce the biogenic amine formation and lower the risk of histamine fish poisoning but is not effective in reduction of bacterial load. Consequently, LB and LD extracts could be used to reduce the biogenic amine formation which provides additional safety prior to spoilage for histamine sensitive fish species. © 2017 Institute of Food Technologists®.

  14. Bioreduction of Fe-bearing clay minerals and their reactivity toward pertechnetate (Tc-99)

    International Nuclear Information System (INIS)

    Bishop, Michael E.; Dong, Hailiang; Kukkadapu, Ravi K.; Liu, Chongxuan; Edelmann, Richard E.

    2011-01-01

    99Technetium (99Tc) is a fission product of uranium-235 and plutonium-239 and poses a high environmental hazard due to its long half-life (t1/2 = 2.13 x 105 y), abundance in nuclear wastes, and environmental mobility under oxidizing conditions (i.e., Tc(VII)). Under reducing conditions, Tc(VII) can be reduced to insoluble Tc(IV). Ferrous iron (Fe(II)), either in aqueous form or in mineral form, has been used to reduce Tc(VII) to Tc(IV). However, the reactivity of Fe(II) from clay minerals, other than nontronite, toward immobilization of Tc(VII) and its role in retention of reduced Tc(IV) have not been investigated. In this study the reactivity of a suite of clay minerals toward Tc(VII) reduction and immobilization was evaluated. The clay minerals chosen for this study included five members in the smectite-illite (S-I) series, (montmorillonite, nontronite, rectorite, mixed layered I-S, and illite), chlorite, and palygorskite. Fe-oxides were removed from these minerals with a modified dithionite-citrate-bicarbonate (DCB) procedure. The total Fe content of these clay minerals, after Fe-oxide removal, ranged from 0.7 to 30.4% by weight, and the Fe(III)/Fe(total) ratio ranged from 44.9 to 98.5%. X-ray diffraction (XRD) and Moessbauer spectroscopy results showed that after Fe oxide removal the clay minerals were free of Fe-oxides. Scanning electron microscopy (SEM) revealed that little dissolution occurred during the DCB treatment. Bioreduction experiments were performed in bicarbonate buffer (pH-7) with Fe(III) in the clay minerals as the sole electron acceptor, lactate as the sole electron donor, and Shewanella Putrifaciens CN32 cells as mediators. In select tubes, anthraquinone-2,6-disulfate (AQDS) was added as electron shuttle to facilitate electron transfer. The extent of Fe(III) bioreduction was the highest for chlorite (∼43 wt%) and the lowest for palygorskite (∼4.17 wt%). In the S-I series, NAu-2 was the most reducible (∼31 %) and illite the least (∼0

  15. Biogenic origin of polymetallic nodules from the Clarion-Clipperton Zone in the Eastern Pacific Ocean: electron microscopic and EDX evidence.

    Science.gov (United States)

    Wang, Xiaohong; Schlossmacher, Ute; Wiens, Matthias; Schröder, Heinz C; Müller, Werner E G

    2009-01-01

    Polymetallic/ferromanganese nodules (Mn-nodules) have been assigned a huge economic potential since they contain considerable concentrations of manganese, copper, nickel, iron, and cobalt. It has been assumed that they are formed by, besides hydrogenous, nonbiogenic processes, biogenic processes based on metabolic processes driven by microorganisms. In the present study, we applied the techniques of digital optical microscopy and high-resolution scanning electron microscopy to search for microorganisms in Mn-nodules. They were collected from the Clarion-Clipperton Zone in the Eastern Pacific Ocean and are composed of Mn (23.9%), Cu (0.69%), Ni (1.02%), Fe (10.9%), and Co (0.29%). These Mn-nodules, between 2.3 and 4.8 cm, show a distinct lamination; they are composed of small-sized micronodules, 100 to 450 microm in size, which are bound together by an interstitial whitish material. In the micronodules, a dense accumulation of microorganisms/bacteria could be visualized. Only two morphotypes exist: (1) round-shaped cocci and (2) elongated rods. The cocci (diameter: approximately 3.5 microm) are arranged in bead-like chains, while the rods (approximately 2 x 0.4 microm) are arranged either as palisades or in a linear row. Energy-dispersive X-ray spectroscopy analyses showed that the areas rich in microorganisms/bacteria are also rich in Mn, while in regions where no microorganisms are found, the element Si is dominant. We suggest that growth of the Mn-nodules starts with the formation of "micronodules." The formation of micronodules is assumed to be mediated by microorganisms. After accretion of biogenic and additional nonbiogenic minerals, the micronodules assemble to large nodules on the sea floor through additional inclusion of nonbiogenic material.

  16. Amorphous calcium carbonate controls avian eggshell mineralization: A new paradigm for understanding rapid eggshell calcification.

    Science.gov (United States)

    Rodríguez-Navarro, Alejandro B; Marie, Pauline; Nys, Yves; Hincke, Maxwell T; Gautron, Joel

    2015-06-01

    Avian eggshell mineralization is the fastest biogenic calcification process known in nature. How this is achieved while producing a highly crystalline material composed of large calcite columnar single crystals remains largely unknown. Here we report that eggshell mineral originates from the accumulation of flat disk-shaped amorphous calcium carbonate (ACC) particles on specific organic sites on the eggshell membrane, which are rich in proteins and sulfated proteoglycans. These structures known as mammillary cores promote the nucleation and stabilization of a amorphous calcium carbonate with calcitic short range order which predetermine the calcite composition of the mature eggshell. The amorphous nature of the precursor phase was confirmed by the diffuse scattering of X-rays and electrons. The nascent calcitic short-range order of this transient mineral phase was revealed by infrared spectroscopy and HRTEM. The ACC mineral deposited around the mammillary core sites progressively transforms directly into calcite crystals without the occurrence of any intermediate phase. Ionic speciation data suggest that the uterine fluid is equilibrated with amorphous calcium carbonate, throughout the duration of eggshell mineralization process, supporting that this mineral phase is constantly forming at the shell mineralization front. On the other hand, the transient amorphous calcium carbonate mineral deposits, as well as the calcite crystals into which they are converted, form by the ordered aggregation of nanoparticles that support the rapid mineralization of the eggshell. The results of this study alter our current understanding of avian eggshell calcification and provide new insights into the genesis and formation of calcium carbonate biominerals in vertebrates. Copyright © 2015 Elsevier Inc. All rights reserved.

  17. Uranium mineralizations in Niger

    International Nuclear Information System (INIS)

    Duchemin, Ch.; Gerbeaud, O.; James, O.; Le Goux, F.; Pouradier, A.; Salabert, J.; Wagani, I.; Breton, G.; Feybesse, J.L.; Parize, O.; Wattinne, A.; Flotte, N.; Brouand, M.

    2009-01-01

    The authors report the analysis of mineralizations located in the Tim Mersoi basin in Niger where sediments deposited between the Paleozoic and the Cretaceous era. They analyse and describe the tectonic evolution of this area during different periods, and focus on some specific uranium mineralisation sites

  18. Uruguay minerals fuels

    International Nuclear Information System (INIS)

    Goso, H.

    1967-01-01

    In this report the bases for the development of the necessary works of prospection are exposed on mineral fuels of Uruguay. We have taken the set from: coal, lutitas bituminous, uranium, petroleum and disturbs. In all the cases we have talked about to the present state of the knowledge and to the works that we considered necessary to develop in each case

  19. Vitamins and Minerals

    Science.gov (United States)

    ... animal products at all, including dairy products) may need to take vitamin supplements. If you're thinking about becoming a ... eating plan that includes the nutrients your body needs. Check with your doctor before taking vitamin or mineral supplements. Some people think that if ...

  20. Enamel mineral loss.

    Science.gov (United States)

    West, Nicola X; Joiner, Andrew

    2014-06-01

    To summarise the chemical, biological and host factors that impact enamel mineral loss, to highlight approaches to contemporary management of clinical conditions involving mineral loss and summarise emerging trends and challenges in this area. "Medline" and "Scopus" databases were searched electronically with the principal key words tooth, enamel, *mineral*, caries and erosion. Language was restricted to English and original studies and reviews were included. Conference papers and abstracts were excluded. Enamel mineral loss leads to the degradation of the surface and subsurface structures of teeth. This can impact their shape, function, sensitivity and aesthetic qualities. Dental caries is a multifactorial disease caused by the simultaneous interplay of dietary sugars, dental plaque, the host and time. There is a steady decline in dental caries in developed countries and the clinical management of caries is moving towards a less invasive intervention, with risk assessment, prevention, control, restoration and recall. Tooth wear can be caused by erosion, abrasion and attrition. Dental erosion can be the result of acid from intrinsic sources, such as gastric acids, or extrinsic sources, in particular from the diet and consumption of acidic foods and drinks. Its prevalence is increasing and it increases with age. Clinical management requires diagnosis and risk assessment to understand the underlying aetiology, so that optimal preventative measures can be implemented. Overall, prevention of enamel mineral loss from caries and tooth wear should form the basis of lifelong dental management. Evidence based oral hygiene and dietary advice is imperative, alongside preventive therapy, to have a healthy lifestyle, whilst retaining hard tooth tissue. © 2014 Elsevier Ltd. All rights reserved.

  1. Aggregate and Mineral Resources - Industrial Mineral Mining Operations

    Data.gov (United States)

    NSGIC Education | GIS Inventory — An Industrial Mineral Mining Operation is a DEP primary facility type related to the Industrial Mineral Mining Program. The sub-facility types are listed below:Deep...

  2. Biogenic processes in crystalline bedrock fractures indicated by carbon isotope signatures of secondary calcite

    International Nuclear Information System (INIS)

    Sahlstedt, Elina; Karhu, Juha A.; Pitkänen, Petteri; Whitehouse, Martin

    2016-01-01

    Variation in 13 C/ 12 C-isotope ratios of fracture filling calcite was analyzed in situ to investigate carbon sources and cycling in fractured bedrock. The study was conducted by separating sections of fracture fillings, and analyzing the 13 C/ 12 C-ratios with secondary ion mass spectrometry (SIMS). Specifically, the study was aimed at fillings where previously published sulfur isotope data indicated the occurrence of bacterial sulfate reduction. The results showed that the δ 13 C values of calcite were highly variable, ranging from −53.8‰ to +31.6‰ (VPDB). The analysis also showed high variations within single fillings of up to 39‰. The analyzed calcite fillings were mostly associated with two calcite groups, of which Group 3 represents possible Paleozoic fluid circulation, based on comparison with similar dated coatings within the Baltic Shield and the succeeding Group 1–2 fillings represent late-stage, low temperature mineralization and are possibly late Paleozoic to Quaternary in age. Both generations were associated with pyrite with δ 34 S values indicative of bacterial sulfate reduction. The δ 13 C values of calcite, however, were indicative of geochemical environments which were distinct for these generations. The δ 13 C values of Group 3 calcite varied from −22.1‰ to +11‰, with a distinct peak at −16‰ to −12‰. Furthermore, there were no observable depth dependent trends in the δ 13 C values of Group 3 calcite. The δ 13 C values of Group 3 calcite were indicative of organic matter degradation and methanogenesis. In contrast to the Group 3 fillings, the δ 13 C values of Group 1–2 calcite were highly variable, ranging from −53.8‰ to +31.6‰ and they showed systematic variation with depth. The near surface environment of <30 m (bsl) was characterized by δ 13 C values indicative of degradation of surface derived organic matter, with δ 13 C values ranging from −30.3‰ to −5.5‰. The intermediate depth of

  3. Biogenic emissions of greenhouse gases caused by arable and animal agriculture. Task 3. Overall biogenic greenhouse gas emissions from agriculture. National Inventories

    International Nuclear Information System (INIS)

    Hensen, A.

    1999-12-01

    The aim of the concerted action 'Biogenic Emissions of Greenhouse Gases Caused by Arable and Animal Agriculture' is to obtain an overview of the current knowledge on the emissions of greenhouse gases related to agricultural activities. This task 3 report summarises the activities that take place in the Netherlands with respect to agriculture emission inventories. This 'national' report was compiled using information from a number of Dutch groups. Therefore, from a national point of view the compilation does not contain new information. The paper can however be useful for other European partners to get an overview of how emission estimates are obtained in the Netherlands. 14 p

  4. Uncertainty in biogenic isoprene emissions and its impacts on tropospheric chemistry in East Asia

    International Nuclear Information System (INIS)

    Han, K.M.; Park, R.S.; Kim, H.K.; Woo, J.H.; Kim, J.; Song, C.H.

    2013-01-01

    In this study, the accuracy of biogenic isoprene emission fluxes over East Asia during two summer months (July and August) was examined by comparing two tropospheric HCHO columns (Ω HCHO ) obtained from the SCIAMACHY sensor and the Community Multi-scale Air Quality (CMAQ v4.7.1) model simulations, using three available biogenic isoprene emission inventories over East Asia: i) GEIA, ii) MEGAN and iii) MOHYCAN. From this comparative analysis, the tropospheric HCHO columns from the CMAQ model simulations, using the MEGAN and MOHYCAN emission inventories (Ω CMAQ, MEGAN and Ω CMAQ, MOHYCAN ), were found to agree well with the tropospheric HCHO columns from the SCIAMACHY observations (Ω SCIA ). Secondly, the propagation of such uncertainties in the biogenic isoprene emission fluxes to the levels of atmospheric oxidants (e.g., OH and HO 2 ) and other atmospheric gaseous/particulate species over East Asia during the two summer months was also investigated. As the biogenic isoprene emission fluxes decreased from the GEIA to the MEGAN emission inventories, the levels of OH radicals increased by factors of 1.39 and 1.75 over Central East China (CEC) and South China, respectively. Such increases in the OH radical mixing ratios subsequently influence the partitioning of HO y species. For example, the HO 2 /OH ratios from the CMAQ model simulations with GEIA isoprene emissions were 2.7 times larger than those from the CMAQ model simulations based on MEGAN isoprene emissions. The large HO 2 /OH ratios from the CMAQ model simulations with the GEIA biogenic emission were possibly due to the overestimation of GEIA biogenic isoprene emissions over East Asia. It was also shown that such large changes in HO x radicals created large differences on other tropospheric compounds (e.g., NO y chemistry) over East Asia during the summer months. - Highlights: • GEIA isoprene emissions were possibly overestimated over East Asia. • Using MEGAN or MOHYCAN emissions in CMAQ well captured

  5. Biogenic precipitation of manganese oxides and enrichment of heavy metals at acidic soil pH

    Science.gov (United States)

    Mayanna, Sathish; Peacock, Caroline L.; Schäffner, Franziska; Grawunder, Anja; Merten, Dirk; Kothe, Erika; Büchel, Georg

    2014-05-01

    The precipitation of biogenic Mn oxides at acidic pH is rarely reported and poorly understood, compared to biogenic Mn oxide precipitation at near neutral conditions. Here we identified and investigated the precipitation of biogenic Mn oxides in acidic soil, and studied their role in the retention of heavy metals, at the former uranium mining site of Ronneburg, Germany. The site is characterized by acidic pH, low carbon content and high heavy metal loads including rare earth elements. Specifically, the Mn oxides were present in layers identified by detailed soil profiling and within these layers pH varied from 4.7 to 5.1, Eh varied from 640 to 660 mV and there were enriched total metal contents for Ba, Ni, Co, Cd and Zn in addition to high Mn levels. Using electron microprobe analysis, synchrotron X-ray diffraction and X-ray absorption spectroscopy, we identified poorly crystalline birnessite (δ-MnO2) as the dominant Mn oxide in the Mn layers, present as coatings covering and cementing quartz grains. With geochemical modelling we found that the environmental conditions at the site were not favourable for chemical oxidation of Mn(II), and thus we performed 16S rDNA sequencing to isolate the bacterial strains present in the Mn layers. Bacterial phyla present in the Mn layers belonged to Firmicutes, Actinobacteria and Proteobacteria, and from these phyla we isolated six strains of Mn(II) oxidizing bacteria and confirmed their ability to oxidise Mn(II) in the laboratory. The biogenic Mn oxide layers act as a sink for metals and the bioavailability of these metals was much lower in the Mn layers than in adjacent layers, reflecting their preferential sorption to the biogenic Mn oxide. In this presentation we will report our findings, concluding that the formation of natural biogenic poorly crystalline birnessite can occur at acidic pH, resulting in the formation of a biogeochemical barrier which, in turn, can control the mobility and bioavailability of heavy metals in

  6. Measurements of biogenic hydrocarbons and carbonyl compounds emitted by trees from temperate warm Atlantic rainforest, Brazil.

    Science.gov (United States)

    Carvalho, Lilian R F; Vasconcellos, Perola C; Mantovani, Waldir; Pool, Cristina S; Pisani, Silvana O

    2005-05-01

    This study is part of a three-year project on biogenic volatile organic compound (VOC) emissions from trees of the temperate warm Atlantic rainforest found in the metropolitan area of Sao Paulo City (MASP). No study of VOC emission rates from plant species has been carried out in the temperate warm Atlantic rainforest of Brazil prior to this work. Eleven species were selected (Alchornea sidifolia, Cupania oblongifolia, Cecropia pachystachia, Syagrus romanzoffiana, Casearia sylvestris, Machaerium villosum, Trema micrantha, Croton floribundus, Myrcia rostrata, Solanum erianthum and Ficus insipida) and some of them were studied in urban, sub-urban and forest areas inside the MASP in order to evaluate biogenic VOC composition at sites characterized by different emission sources. Biogenic VOC emissions were determined by placing branches of plants in a dynamic enclosure system, an all-Teflon cuvette, and by sampling the compounds in the air leaving the cuvette. Pre-concentration using adsorbents to retain the VOC, followed by GC-MS after thermal desorption of the sample, was employed to determine the amount of biogenic hydrocarbons. The collection of carbonyl compounds on a 2,4-dinitrophenylhydrazine coated silica followed by HPLC-UV was used to analyze low molecular weight carbonyl compounds. Emission rates of isoprene, alpha-pinene, camphene and limonene ranged from 0.01 to 2.16 microg C h(-1) g(-1) and emission rates of aldehydes (C(2)-C(6)), acrolein, methacrolein and 2-butanone ranged from 1.5 x 10(-2) to 2.3 micro g C h(-1) g (-1). Ambient and leaf temperatures, relative humidity, light intensity, O(3) and NO(x) levels in the local atmosphere were monitored during experiments. It was possible to identify different biogenic VOCs emitted from typical plants of temperate warm Atlantic rainforest. The emission rates were reported as a function of the type of site investigated and were only provided for compounds for which quantification was feasible. Other biogenic

  7. Investigating the Basis of Biogenic Calcium Carbonate Formation from an Amorphous Precursor: Nature of the Transformation to Calcite on Hydroxyl Functionalized Surfaces

    Science.gov (United States)

    Wang, D.; Lee, J. R.; Talley, C. E.; Murphy, K. E.; Han, T. Y.; Deyoreo, J. J.; Dove, P. M.

    2006-12-01

    Calcium carbonate biominerals are particularly significant because of their direct role in regulating the global carbon cycle, as well as their ubiquitous occurrence across earth environments. Biogenic carbonates are further distinguished by their broad phlyogenetic distribution; hence it has been suggested that unrelated eukaryotes must have used similar biochemical strategies to control mineralization. Recent studies have shown that an amorphous calcium carbonate (ACC) phase potentially plays a key role in the initial formation of carbonate minerals and in "shaping" them into complex morphologies widely seen in biominerals. Echinoderms, mollusks, and possibly many other organisms use ACC as a precursor phase that is first nucleated in cellularly controlled environments such as vesicles and subsequently transforms into a fully crystalline material. Recent studies on sea urchin embryos have shown that during transformation ACC develops short range that resembles calcite before fully crystallizing and serve as inspiration for our studies in synthetic systems. Self-assembled monolayers (SAM) on gold and silver have been used as simple model systems that approximate biological surfaces. Many studies have shown that thiol monolayers with hydroxyl termination stabilize a transitory ACC film that with prolonged exposure to aqueous solution transforms into calcite nucleated on {104} faces. Using Near Edge X-ray Absorption Fine Structure (NEXAFS) we studied SAM/mineral interactions with well ordered mercaptophenol monolayers showed that when these films are first exposed to calcium carbonate solutions, they become disordered and remain so after subsequent deposition of an ACC over-layer. Yet calcite nucleates and grows from the surface bound ACC with predominantly {104} orientation, which suggests a dynamic structural relationship between the SAMs and the mineral phase. While the monolayer/mineral phase interaction has been characterized, the mechanism for nucleating

  8. Origin of uranium and rare earth minerals in bone detritus from rare metal deposits

    Science.gov (United States)

    Baturin, G. N.; Dubinchuk, V. T.

    2011-06-01

    In order to ascertain the forms in which uranium is present in ores of the Melovoe rare metal sedimentary deposit of uranium and rare earth minerals (South Mangyshlak), we investigated a series of typical ore samples that were collected earlier; both the uranium content and the total content of rare earth metals in them lay within 0.1-0.3%. The study was carried out by analytical electron microscopy using transmission electron microscopy and scanning electron microscopy, electron microdiffraction, and microprobing. It was ascertained that both uranium and rare earth elements are present in ore mostly associated with biogenic phosphate in the form of natural minerals, such as uraninite, ningyoite, coffinite, autenite, and churchite. Iron hydroxides and graphitized organic matter are present in some samples. It is assumed that the co-occurrence of uranium and rare earth elements, which is nontypical for the sedimentary process, resulted from secondary epigenetic processes and alternation of reducing and oxidizing environmental conditions.

  9. Oxygen Extraction from Minerals

    Science.gov (United States)

    Muscatello, Tony

    2017-01-01

    Oxygen, whether used as part of rocket bipropellant or for astronaut life support, is a key consumable for space exploration and commercialization. In Situ Resource Utilization (ISRU) has been proposed many times as a method for making space exploration more cost effective and sustainable. On planetary and asteroid surfaces the presence of minerals in the regolith that contain oxygen is very common, making them a potential oxygen resource. The majority of research and development for oxygen extraction from minerals has been for lunar regolith although this work would generally be applicable to regolith at other locations in space. This presentation will briefly survey the major methods investigated for oxygen extraction from regolith with a focus on the current status of those methods and possible future development pathways. The major oxygen production methods are (1) extraction from lunar ilmenite (FeTiO3) with either hydrogen or carbon monoxide, (2) carbothermal reduction of iron oxides and silicates with methane, and (3) molten regolith electrolysis (MRE) of silicates. Methods (1) and (2) have also been investigated in a two-step process using CO reduction and carbon deposition followed by carbothermal reduction. All three processes have byproducts that could also be used as resources. Hydrogen or carbon monoxide reduction produce iron metal in small amounts that could potentially be used as construction material. Carbothermal reduction also makes iron metal along with silicon metal and a glass with possible applications. MRE produces iron, silicon, aluminum, titanium, and glass, with higher silicon yields than carbothermal reduction. On Mars and possibly on some moons and asteroids, water is present in the form of mineral hydrates, hydroxyl (-OH) groups on minerals, andor water adsorbed on mineral surfaces. Heating of the minerals can liberate the water which can be electrolyzed to provide a source of oxygen as well. The chemistry of these processes, some key

  10. Indústria mineral

    Directory of Open Access Journals (Sweden)

    Iran F. Machado

    1998-08-01

    Full Text Available A INDÚSTRIA mineral brasileira é analisada, de modo sucinto, face aos desafios impostos pela globalização contemporânea. As mudanças profundas ocorridas no contexto internacional na última década, abrangendo as esferas política, econômica, social e institucional, exigem uma reflexão aprofundada sobre o papel a ser desempenhado pelo Brasil no comércio internacional de bens minerais. De um lado, as oportunidades de aproveitamento de jazidas de classe internacional, principalmente na Amazônia, são bastante promissoras. Por outro, não se deve ignorar que: a explotação dessas reservas terá de obedecer a critérios de sustentabilidade, seguindo paradigmas já adotados em países desenvolvidos; o Brasil terá de garantir a sua competitividade diante dos seus principais concorrentes (Austrália, CEI, China e Índia. A questão dos minerais estratégicos é também abordada, com ênfase nas preocupações demonstradas pelo Departamento de Estado dos EUA. Finalmente, são alinhados três cenários possíveis para o desempenho futuro da mineração brasileira, instando-se o governo a dedicar maior atenção ao destino do nosso subsolo.THE MINERAL industry of Brazil is briefly analysed vis-à-vis the challenges imposed by the cruenta globalization process. The profound changes that occurred in the international framework during the last decade, encompassing the political, economic, social, and institutional structures, demand a thorough appraisal about the role to be played by Brazil in the international market of mineral commodities. On one hand, the opportunities open for world class deposits, mainly in the Amazon, are very promising. On the other hand, it is mandatory to take into account that: the exploitation of these reserves shall comply with sound sustainability criteria, following guidelines already adopted by some developed countries; Brazil will have to demonstrate its competitiveness among the major competitors (Australia

  11. Cavity-Enhanced Gas Analyzer for In-Situ Sampling of Biogenic Gases and Their Isotopes, Phase I

    Data.gov (United States)

    National Aeronautics and Space Administration — This Small Business Innovation Research Phase I project concerns the novel application of cavity-enhanced absorption spectroscopy to quantify biogenic gases (CH4,...

  12. Datasets used in the manuscript titled "Nitrate radicals and biogenic volatile organic compounds: oxidation, mechanisms and organic aerosol"

    Data.gov (United States)

    U.S. Environmental Protection Agency — This dataset documents that all of the data used in the manuscript "Nitrate radicals and biogenic volatile organic compounds: oxidation, mechanisms, and organic...

  13. Effects of iron availability on pigment signature and biogenic silica production in the coastal diatom Chaetoceros gracilis

    Digital Repository Service at National Institute of Oceanography (India)

    Biswas, H.; Bandyopadhyay, D.

    The effects of iron availability on pigment signature and biogenic silica production were investigated for the first time in the coastal diatom Chaetoceros gracilis (isolated from the SW coast of the Bay of Bengal, India). Results revealed...

  14. The role of biogenic structures on the biogeochemical functioning of mangrove constructed wetlands sediments - A mesocosm approach

    International Nuclear Information System (INIS)

    Penha-Lopes, Gil; Kristensen, Erik; Flindt, Mogens; Mangion, Perrine; Bouillon, Steven; Paula, Jose

    2010-01-01

    Benthic metabolism (measured as CO 2 production) and carbon oxidation pathways were evaluated in 4 mangrove mesocosms subjected daily to seawater or 60% sewage in the absence or presence of mangrove trees and biogenic structures (pneumatophores and crab burrows). Total CO 2 emission from darkened sediments devoid of biogenic structures at pristine conditions was comparable during inundation (immersion) and air exposure (emersion), although increased 2-7 times in sewage contaminated mesocosms. Biogenic structures increased low tide carbon gas emissions at contaminated (30%) and particularly pristine conditions (60%). When sewage was loaded into the mesocosms under unvegetated and planted conditions, iron reduction was substituted by sulfate reduction and contribution of aerobic respiration to total metabolism remained above 50%. Our results clearly show impacts of sewage on the partitioning of electron acceptors in mangrove sediment and confirm the importance of biogenic structures for biogeochemical functioning but also on greenhouse gases emission.

  15. The outer membrane protein Omp35 affects the reduction of Fe(III, nitrate, and fumarate by Shewanella oneidensis MR-1

    Directory of Open Access Journals (Sweden)

    Myers Charles R

    2004-06-01

    Full Text Available Abstract Background Shewanella oneidensis MR-1 uses several electron acceptors to support anaerobic respiration including insoluble species such as iron(III and manganese(IV oxides, and soluble species such as nitrate, fumarate, dimethylsulfoxide and many others. MR-1 has complex branched electron transport chains that include components in the cytoplasmic membrane, periplasm, and outer membrane (OM. Previous studies have implicated a role for anaerobically upregulated OM electron transport components in the use of insoluble electron acceptors, and have suggested that other OM components may also contribute to insoluble electron acceptor use. In this study, the role for an anaerobically upregulated 35-kDa OM protein (Omp35 in the use of anaerobic electron acceptors was explored. Results Omp35 was purified from the OM of anaerobically grown cells, the gene encoding Omp35 was identified, and an omp35 null mutant (OMP35-1 was isolated and characterized. Although OMP35-1 grew on all electron acceptors tested, a significant lag was seen when grown on fumarate, nitrate, and Fe(III. Complementation studies confirmed that the phenotype of OMP35-1 was due to the loss of Omp35. Despite its requirement for wild-type rates of electron acceptor use, analysis of Omp35 protein and predicted sequence did not identify any electron transport moieties or predicted motifs. OMP35-1 had normal levels and distribution of known electron transport components including quinones, cytochromes, and fumarate reductase. Omp35 is related to putative porins from MR-1 and S. frigidimarina as well as to the PorA porin from Neisseria meningitidis. Subcellular fraction analysis confirmed that Omp35 is an OM protein. The seven-fold anaerobic upregulation of Omp35 is mediated post-transcriptionally. Conclusion Omp35 is a putative porin in the OM of MR-1 that is markedly upregulated anaerobically by a post-transcriptional mechanism. Omp35 is required for normal rates of growth on Fe(III

  16. Outlook 96: Minerals and Energy

    International Nuclear Information System (INIS)

    1996-01-01

    Papers discussing the future of Australia's minerals and energy are presented under the following headings: Australia in the global minerals and energy markets; minerals exploration; steelmaking raw materials; aluminium and alumina; gold; nickel; base metals; titanium minerals; energy for a sustainable future; electricity; electricity in Asia; crude oil; coal trade; natural gas in Australia and uranium. Relevant papers are individually indexed/abstracted. Tabs., figs., refs

  17. Aggregates from mineral wastes

    Directory of Open Access Journals (Sweden)

    Baic Ireneusz

    2016-01-01

    Full Text Available The problem concerning the growing demand for natural aggregates and the need to limit costs, including transportation from remote deposits, cause the increase in growth of interest in aggregates from mineral wastes as well as in technologies of their production and recovery. The paper presents the issue related to the group of aggregates other than natural. A common name is proposed for such material: “alternative aggregates”. The name seems to be fully justified due to adequacy of this term because of this raw materials origin and role, in comparison to the meaning of natural aggregates based on gravel and sand as well as crushed stones. The paper presents characteristics of the market and basic application of aggregates produced from mineral wastes, generated in the mining, power and metallurgical industries as well as material from demolished objects.

  18. Rock and mineral magnetism

    CERN Document Server

    O’Reilly, W

    1984-01-01

    The past two decades have witnessed a revolution in the earth sciences. The quantitative, instrument-based measurements and physical models of. geophysics, together with advances in technology, have radically transformed the way in which the Earth, and especially its crust, is described. The study of the magnetism of the rocks of the Earth's crust has played a major part in this transformation. Rocks, or more specifically their constituent magnetic minerals, can be regarded as a measuring instrument provided by nature, which can be employed in the service of the earth sciences. Thus magnetic minerals are a recording magnetometer; a goniometer or protractor, recording the directions of flows, fields and forces; a clock; a recording thermometer; a position recorder; astrain gauge; an instrument for geo­ logical surveying; a tracer in climatology and hydrology; a tool in petrology. No instrument is linear, or free from noise and systematic errors, and the performance of nature's instrument must be assessed and ...

  19. Light reflection control in biogenic micro-mirror by diamagnetic orientation.

    Science.gov (United States)

    Iwasaka, Masakazu; Mizukawa, Yuri

    2013-04-02

    As has become known, most materials, such as proteins and DNA, show orientation under strong magnetic fields. However, the critical threshold for the magnetic field of the magnetomechanical phenomena is still unknown. We demonstrate that a thin micro-mirror from a fish scale with high reflectivity exhibits a distinct magnetic response at 100 mT. A dramatic event under a magnetic field is the decrease of light scattering from guanine crystals as well as rapid rotation against the applied magnetic field. Enhancement of light scattering intensity is also observed when the three vectors of light incidence, magnetic field, and observation are orthogonally directed. The results indicate that biogenic guanine crystals have a large diamagnetic anisotropy along the surface parallel and normal directions. The micrometer to submicrometer scale of thin biogenic plates can act as a noninvasively, magnetically controlled micro-mirror for light irradiation control in the micrometer-scale region.

  20. Assessing the quality of sardine based on biogenic amines using a fuzzy logic model.

    Science.gov (United States)

    Zare, Davood; Ghazali, H M

    2017-04-15

    There is an increasing concern about the quality and quality assessment procedures of seafood. In the present study, a model to assess fish quality based on biogenic amine contents using fuzzy logic model (FLM) is proposed. The fish used was sardine (Sardinella sp.) where the production of eight biogenic amines was monitored over fifteen days of storage at 0, 3 and 10°C. Based on the results, histamine, putrescine and cadaverine were selected as input variables and twelve quality grades were considered for quality of fish as output variables for the FLM. Input data were processed by rules established in the model and were then defuzzified according to defined output variables. Finally, the quality of fish was evaluated using the designed model and Pearson correlation between storage times with quality of fish showed r=0.97, 0.95 and 1 for fish stored at 0, 3 and 10°C, respectively. Copyright © 2016. Published by Elsevier Ltd.

  1. PREPARATION AND PROPERTIES OF THE COLLODIAL SOLUTION BASED ON BIOGENIC METAL NANOPARTICLES

    Directory of Open Access Journals (Sweden)

    K. V. Liapina

    2014-12-01

    Full Text Available The aim of the work was obtaining a stable suspension based on biocompatible substances with application of biogenic metal nanoparticles encapsulated into NaCl salt matrix, as a precursor. Water-soluble complex based on different amine derivatives with antiseptic properties was selected as a liquid for salt dissolution. The solution was subjected to dispersion using ultrasonication at elevated temperature. Dispersion is accompanied by salt shell removal with simultaneous formation of an organic shell on the surfaces of metal nanoparticles that ensure their stabilization. Study of the suspension after soaking at room temperature for 100 days showed that its characteristics remain stable. A method for producing a stable colloidal solution based on nanoparticles of biogenic metal (Cu, Co, fem etc. was developed. Metal nanopowder encapsulated into salt shell was used as a precursor. It is shown that such colloidal solutions are characterized by narrow size dispersion, as well as stability to temperature impact and time factor.

  2. [Distribution of biogenic amines in the hippocampal formation in the rabbit].

    Science.gov (United States)

    Budantsev, A Iu; Gur'ianova, A D

    1975-06-01

    The hippocampal formation (the hippocampus and the dentate fascia) of the rabbit was studied by histochemical fluorescent method of Falk to determine localization of monoaminergic terminals containing biogenic amines: noradrenalin, dophamine and serotonin. It was shown that monoaminenergic terminals in the hippocampus were in two zones of afferent terminations: in the zone of ending of the perforating way (str. lacunosum-moleculare of fields CA1 and CA2; str. moleculare of the dentate fascia) and in the subgranular zone of the hilum where a part of septofimbrial way terminated on granular neurons of the dentate fascia, the main cellular elements of the hipocampus (pyramidal, granular and basket cells of the hippocampus) did not contain biogenic amines.

  3. Structural and functional probing of the biogenic amine transporters by fluorescence spectroscopy

    DEFF Research Database (Denmark)

    Rasmussen, Søren G F; Adkins, Erika M; Carroll, F Ivy

    2003-01-01

    Fluorescence spectroscopy techniques have proven extremely powerful for probing the molecular structure and function of membrane proteins. In this review, it will be described how we have applied a series of these techniques to the biogenic amine transporters, which are responsible for the cleara......Fluorescence spectroscopy techniques have proven extremely powerful for probing the molecular structure and function of membrane proteins. In this review, it will be described how we have applied a series of these techniques to the biogenic amine transporters, which are responsible...... for the clearance of dopamine, norepinephrine, and serotonin from the synaptic cleft. In our studies, we have focused on the serotonin transporter (SERT) for which we have established a purification procedure upon expression of the transporter in Sf-9 insect cells. Importantly, the purified transporter displays...

  4. A web accessible resource for investigating cassava phenomics and genomics information: BIOGEN BASE.

    Science.gov (United States)

    Jayakodi, Murukarthick; Selvan, Sreedevi Ghokhilamani; Natesan, Senthil; Muthurajan, Raveendran; Duraisamy, Raghu; Ramineni, Jana Jeevan; Rathinasamy, Sakthi Ambothi; Karuppusamy, Nageswari; Lakshmanan, Pugalenthi; Chokkappan, Mohan

    2011-01-01

    The goal of our research is to establish a unique portal to bring out the potential outcome of the research in the Casssava crop. The Biogen base for cassava clearly brings out the variations of different traits of the germplasms, maintained at the Tapioca and Castor Research Station, Tamil Nadu Agricultural University. Phenotypic and genotypic variations of the accessions are clearly depicted, for the users to browse and interpret the variations using the microsatellite markers. Database (BIOGEN BASE - CASSAVA) is designed using PHP and MySQL and is equipped with extensive search options. It is more user-friendly and made publicly available, to improve the research and development of cassava by making a wealth of genetics and genomics data available through open, common, and worldwide forum for all individuals interested in the field. The database is available for free at http://www.tnaugenomics.com/biogenbase/casava.php.

  5. Magnetic particles-based biosensor for biogenic amines using an optical oxygen sensor as a transducer

    International Nuclear Information System (INIS)

    Pospiskova, K.; Sebela, M.; Safarik, I.; Kuncova, G.

    2013-01-01

    We have developed a fibre optic biosensor with incorporated magnetic microparticles for the determination of biogenic amines. The enzyme diamine oxidase from Pisum sativum was immobilized either on chitosan-coated magnetic microparticles or on commercial microbeads modified with a ferrofluid. Both the immobilized enzyme and the ruthenium complex were incorporated into a UV-cured inorganic-organic polymer composite and deposited on a lens that was connected, by optical fibres, to an electro-optical detector. The enzyme catalyzes the oxidation of amines under consumption of oxygen. The latter was determined by measuring the quenched fluorescence lifetime of the ruthenium complex. The limits of detection for the biogenic amines putrescine and cadaverine are 25-30 μmol L -1 , and responses are linear up to a concentration of 1 mmol L -1 . (author)

  6. Coastal placer minerals

    Digital Repository Service at National Institute of Oceanography (India)

    Iyer, S.D.; Gujar, A.R.

    could then indicate whether the minerals can be exploited economically for use. If so, then the requisite permissions and licenses need to be obtained to mine the sands from the government. The sands can either be used within the country..., Australia, USA, Canada, South Africa, Sri Lanka, Brazil, Norway and Malaysia. India is blessed with a long coastline of more than 7500 km, including islands. The erosion of rocks results in coastal placers such as rutile, ilmenite, zircon, monazite...

  7. Mathematical model for bone mineralization

    OpenAIRE

    Komarova, Svetlana V.; Safranek, Lee; Gopalakrishnan, Jay; Ou, Miao-jung Yvonne; McKee, Marc D.; Murshed, Monzur; Rauch, Frank; Zuhr, Erica

    2015-01-01

    Defective bone mineralization has serious clinical manifestations, including deformities and fractures, but the regulation of this extracellular process is not fully understood. We have developed a mathematical model consisting of ordinary differential equations that describe collagen maturation, production and degradation of inhibitors, and mineral nucleation and growth. We examined the roles of individual processes in generating normal and abnormal mineralization patterns characterized usin...

  8. 76 FR 6110 - Conflict Minerals

    Science.gov (United States)

    2011-02-03

    ... the issuer to exercise due diligence on the source and chain of custody of its conflict minerals...-10] RIN 3235-AK84 Conflict Minerals AGENCY: Securities and Exchange Commission. ACTION: Proposed rule...'') and would require any such issuer for which conflict minerals are necessary to the functionality or...

  9. Digital mineral logging system

    International Nuclear Information System (INIS)

    West, J.B.

    1980-01-01

    A digital mineral logging system acquires data from a mineral logging tool passing through a borehole and transmits the data uphole to an electronic digital signal processor. A predetermined combination of sensors, including a deviometer, is located in a logging tool for the acquisition of the desired data as the logging tool is raised from the borehole. Sensor data in analog format is converted in the logging tool to a digital format and periodically batch transmitted to the surface at a predetermined sampling rate. An identification code is provided for each mineral logging tool, and the code is transmitted to the surface along with the sensor data. The self-identifying tool code is transmitted to the digital signal processor to identify the code against a stored list of the range of numbers assigned to that type of tool. The data is transmitted up the d-c power lines of the tool by a frequency shift key transmission technique. At the surface, a frequency shift key demodulation unit transmits the decoupled data to an asynchronous receiver interfaced to the electronic digital signal processor. During a recording phase, the signals from the logging tool are read by the electronic digital signal processor and stored for later processing. During a calculating phase, the stored data is processed by the digital signal processor and the results are outputted to a printer or plotter, or both

  10. Structure, Function, and Evolution of Biogenic Amine-binding Proteins in Soft Ticks

    Energy Technology Data Exchange (ETDEWEB)

    Mans, Ben J.; Ribeiro, Jose M.C.; Andersen, John F. (NIH)

    2008-08-19

    Two highly abundant lipocalins, monomine and monotonin, have been isolated from the salivary gland of the soft tick Argas monolakensis and shown to bind histamine and 5-hydroxytryptamine (5-HT), respectively. The crystal structures of monomine and a paralog of monotonin were determined in the presence of ligands to compare the determinants of ligand binding. Both the structures and binding measurements indicate that the proteins have a single binding site rather than the two sites previously described for the female-specific histamine-binding protein (FS-HBP), the histamine-binding lipocalin of the tick Rhipicephalus appendiculatus. The binding sites of monomine and monotonin are similar to the lower, low affinity site of FS-HBP. The interaction of the protein with the aliphatic amine group of the ligand is very similar for the all of the proteins, whereas specificity is determined by interactions with the aromatic portion of the ligand. Interestingly, protein interaction with the imidazole ring of histamine differs significantly between the low affinity binding site of FS-HBP and monomine, suggesting that histamine binding has evolved independently in the two lineages. From the conserved features of these proteins, a tick lipocalin biogenic amine-binding motif could be derived that was used to predict biogenic amine-binding function in other tick lipocalins. Heterologous expression of genes from salivary gland libraries led to the discovery of biogenic amine-binding proteins in soft (Ornithodoros) and hard (Ixodes) tick genera. The data generated were used to reconstruct the most probable evolutionary pathway for the evolution of biogenic amine-binding in tick lipocalins.

  11. Incremental Reactivity Effects of Anthropogenic and Biogenic Volatile Organic Compounds on Secondary Organic Aerosol Formation

    Science.gov (United States)

    Kacarab, M.; Li, L.; Carter, W. P. L.; Cocker, D. R., III

    2015-12-01

    Two surrogate reactive organic gas (ROG) mixtures were developed to create a controlled reactivity environment simulating different urban atmospheres with varying levels of anthropogenic (e.g. Los Angeles reactivity) and biogenic (e.g. Atlanta reactivity) influences. Traditional chamber experiments focus on the oxidation of one or two volatile organic compound (VOC) precursors, allowing the reactivity of the system to be dictated by those compounds. Surrogate ROG mixtures control the overall reactivity of the system, allowing for the incremental aerosol formation from an added VOC to be observed. The surrogate ROG mixtures were developed based on that used to determine maximum incremental reactivity (MIR) scales for O3 formation from VOC precursors in a Los Angeles smog environment. Environmental chamber experiments were designed to highlight the incremental aerosol formation in the simulated environment due to the addition of an added anthropogenic (aromatic) or biogenic (terpene) VOC. All experiments were conducted in the UC Riverside/CE-CERT dual 90m3 environmental chambers. It was found that the aerosol precursors behaved differently under the two altered reactivity conditions, with more incremental aerosol being formed in the anthropogenic ROG system than in the biogenic ROG system. Further, the biogenic reactivity condition inhibited the oxidation of added anthropogenic aerosol precursors, such as m-xylene. Data will be presented on aerosol properties (density, volatility, hygroscopicity) and bulk chemical composition in the gas and particle phases (from a SYFT Technologies selected ion flow tube mass spectrometer, SIFT-MS, and Aerodyne high resolution time of flight aerosol mass spectrometer, HR-ToF-AMS, respectively) comparing the two controlled reactivity systems and single precursor VOC/NOx studies. Incremental aerosol yield data at different controlled reactivities provide a novel and valuable insight in the attempt to extrapolate environmental chamber

  12. Methyl chavicol: characterization of its biogenic emission rate, abundance, and oxidation products in the atmosphere

    Directory of Open Access Journals (Sweden)

    N. C. Bouvier-Brown

    2009-03-01

    Full Text Available We report measurements of ambient atmospheric mixing ratios for methyl chavicol and determine its biogenic emission rate. Methyl chavicol, a biogenic oxygenated aromatic compound, is abundant within and above Blodgett Forest, a ponderosa pine forest in the Sierra Nevada Mountains of California. Methyl chavicol was detected simultaneously by three in-situ instruments – a gas chromatograph with mass spectrometer detector (GC-MS, a proton transfer reaction mass spectrometer (PTR-MS, and a thermal desorption aerosol GC-MS (TAG – and found to be abundant within and above Blodgett Forest. Methyl chavicol atmospheric mixing ratios are strongly correlated with 2-methyl-3-buten-2-ol (MBO, a light- and temperature-dependent biogenic emission from the ponderosa pine trees at Blodgett Forest. Scaling from this correlation, methyl chavicol emissions account for 4–68% of the carbon mass emitted as MBO in the daytime, depending on the season. From this relationship, we estimate a daytime basal emission rate of 0.72–10.2 μgCg−1 h−1, depending on needle age and seasonality. We also present the first observations of its oxidation products (4-methoxybenzaldehyde and 4-methyoxy benzene acetaldehyde in the ambient atmosphere. Methyl chavicol is a major essential oil component of many plant species. This work suggests that methyl chavicol plays a significant role in the atmospheric chemistry of Blodgett Forest, and potentially other sites, and should be included explicitly in both biogenic volatile organic carbon emission and atmospheric chemistry models.

  13. Biogenic Fabrication of Iron/Iron Oxide Nanoparticles and Their Application

    OpenAIRE

    Siddiqi, Khwaja Salahuddin; ur Rahman, Aziz; Tajuddin,; Husen, Azamal

    2016-01-01

    Enshrined in this review are the biogenic fabrication and applications of coated and uncoated iron and iron oxide nanoparticles. Depending on their magnetic properties, they have been used in the treatment of cancer, drug delivery system, MRI, and catalysis and removal of pesticides from potable water. The polymer-coated iron and iron oxide nanoparticles are made biocompatible, and their slow release makes them more effective and lasting. Their cytotoxicity against microbes under aerobic/anae...

  14. Absorption of Visible and Long-wave Radiation by Primary and Secondary Biogenic Aerosols.

    Science.gov (United States)

    Gaffney, J. S.; Marley, N. A.

    2008-12-01

    Field results for the 14C content of carbonaceous aerosols are presented that indicate significant biogenic sources of both primary and secondary aerosols in urban and regional environments. Samples collected in Mexico City and downwind of the urban area during the MILAGRO field study are compared with results reported previously in the literature indicating a significant amount of biogenic aerosols from both biomass burning and secondary photochemical production (e.g. terpene oxidations) are contributing to the overall carbonaceous aerosols in the optically active region of 0.1 to 1.0 micron. Samples in this size range collected on quartz fiber filters were also examined using an integrating sphere and FTIR diffuse reflectance techniques to obtain absorption spectra from 280 to the mid-IR. These data clearly indicate that the biogenic derived primary aerosols from agricultural and trash-burning, as well as secondary organic aerosols from isoprene and terpene oxidations will produce both UV-Visible (short-wave) absorbing substances as well as IR (long-wave) absorbing compounds including humic-like-substances (HULIS). With the anticipated increases in growing seasons (i.e. earlier springs and longer summers) the likely hood of increased fires (forest and grassland) as well as the continuing growth in agricultural burning activities, these primary sources are expected to increase and may play a role in heating of the atmosphere. The compound effects of these primary and secondary biogenic sources of absorbing aerosols to the total aerosol loading and regional climate will be discussed. This work was supported by the Office of Science (BER), U.S. Department of Energy, Grant No. DE-FG02-07ER64328 as part of the Atmospheric Science Program.